Query gi|254780440|ref|YP_003064853.1| transcription elongation factor GreA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 158
No_of_seqs 135 out of 2199
Neff 6.5
Searched_HMMs 33803
Date Wed Jun 1 13:06:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780440.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1grj_A GREA protein; transcri 99.9 2.4E-24 7E-29 175.6 8.9 83 2-84 1-83 (83)
2 >2p4v_A Transcription elongati 99.9 3.3E-24 9.9E-29 174.6 9.5 81 2-82 1-81 (82)
3 >2f23_A Anti-cleavage anti-GRE 99.9 7.5E-24 2.2E-28 172.4 8.8 79 1-80 1-79 (80)
4 >1grj_A GREA protein; transcri 99.9 3.2E-22 9.6E-27 161.9 7.2 75 84-158 1-75 (75)
5 >3bmb_A Regulator of nucleosid 99.8 9.5E-21 2.8E-25 152.6 10.9 74 84-157 1-75 (85)
6 >2pn0_A Prokaryotic transcript 99.8 7.8E-21 2.3E-25 153.2 10.1 74 84-157 1-75 (87)
7 >2f23_A Anti-cleavage anti-GRE 99.8 1.3E-20 3.9E-25 151.7 10.3 73 84-156 1-75 (76)
8 >2p4v_A Transcription elongati 99.8 1.8E-20 5.4E-25 150.8 8.6 74 84-158 1-74 (76)
9 >3bmb_A Regulator of nucleosid 87.3 0.55 1.6E-05 26.8 3.2 50 1-83 1-51 (51)
10 >2qdx_A Ferredoxin reductase; 79.2 3.1 9.1E-05 22.0 4.3 65 83-147 28-97 (99)
11 >1krh_A Benzoate 1,2-dioxygena 78.4 4 0.00012 21.3 4.7 63 85-147 37-102 (104)
12 >1fdr_A Flavodoxin reductase; 76.9 5.8 0.00017 20.3 5.3 64 85-148 30-97 (99)
13 >2kfw_A FKBP-type peptidyl-pro 76.6 5.9 0.00018 20.2 5.6 29 116-144 35-63 (142)
14 >3gty_X Trigger factor, TF; ch 74.2 6.8 0.0002 19.8 5.3 39 118-156 39-81 (94)
15 >2pn0_A Prokaryotic transcript 74.2 1.7 4.9E-05 23.7 1.8 47 4-83 8-54 (54)
16 >2gpj_A Siderophore-interactin 69.7 7 0.00021 19.8 4.1 64 84-147 37-105 (107)
17 >1w26_A Trigger factor, TF; ch 68.3 5.3 0.00016 20.5 3.3 25 120-144 60-84 (122)
18 >1ep3_B Dihydroorotate dehydro 65.0 7.6 0.00022 19.6 3.5 61 84-147 32-100 (103)
19 >3cgm_A SLYD, peptidyl-prolyl 64.7 9.8 0.00029 18.8 4.1 36 121-156 35-80 (102)
20 >2k8i_A SLYD, peptidyl-prolyl 61.6 12 0.00036 18.2 4.5 40 117-156 36-85 (116)
21 >1e32_A P97; membrane fusion; 60.7 13 0.00038 18.1 4.3 63 76-143 41-104 (108)
22 >2w1j_A Putative sortase, sort 58.1 14 0.00042 17.8 4.4 36 123-158 120-155 (212)
23 >1gvh_A Flavohemoprotein; oxid 57.5 14 0.00043 17.8 4.5 60 85-147 34-103 (105)
24 >1tvc_A Methane monooxygenase 56.2 7.5 0.00022 19.6 2.2 63 86-148 44-110 (113)
25 >2bgi_A Ferredoxin-NADP(H) red 56.1 15 0.00045 17.6 4.2 63 85-147 43-111 (112)
26 >2eix_A NADH-cytochrome B5 red 54.1 16 0.00049 17.4 6.4 61 84-147 40-108 (110)
27 >3is6_A Putative permease prot 52.8 17 0.00051 17.3 4.3 40 117-156 107-146 (244)
28 >1ses_A Seryl-tRNA synthetase; 51.4 18 0.00053 17.1 3.6 63 9-72 10-72 (83)
29 >3fn5_A Sortase A; sortase-fol 51.0 18 0.00054 17.1 4.1 29 129-157 95-123 (187)
30 >1hxv_A Trigger factor; FKBP f 50.4 5.9 0.00017 20.3 0.9 27 118-144 62-88 (113)
31 >2dq3_A Seryl-tRNA synthetase; 49.3 19 0.00058 16.9 3.9 63 10-73 37-101 (112)
32 >1t11_A Trigger factor, TF; he 49.0 1.8 5.4E-05 23.5 -1.8 53 84-144 8-68 (106)
33 >2pbc_A FK506-binding protein 48.4 17 0.00049 17.4 3.0 61 85-145 5-68 (102)
34 >2awg_A 38 kDa FK-506 binding 47.9 20 0.00061 16.8 3.8 57 85-145 29-88 (118)
35 >2k8i_A SLYD, peptidyl-prolyl 46.2 22 0.00064 16.6 3.8 25 132-156 20-44 (55)
36 >1vlo_A Aminomethyltransferase 45.8 5.9 0.00017 20.2 0.4 34 121-154 43-76 (77)
37 >1qfj_A Protein (flavin reduct 45.2 10 0.00031 18.7 1.6 63 83-147 27-94 (96)
38 >1wle_A Seryl-tRNA synthetase; 44.5 23 0.00068 16.5 8.2 63 10-73 39-104 (121)
39 >1mtz_A Proline iminopeptidase 43.5 24 0.00071 16.4 4.3 39 16-55 3-41 (50)
40 >1whm_A Cylindromatosis tumor 40.8 20 0.0006 16.8 2.5 49 80-128 4-55 (92)
41 >2iv2_X Formate dehydrogenase 39.5 28 0.00081 16.0 4.7 35 119-153 41-75 (124)
42 >1t2w_A Sortase; transpeptidas 39.1 28 0.00083 15.9 4.1 31 127-157 69-99 (145)
43 >1fnb_A Ferredoxin-NADP+ reduc 39.0 28 0.00083 15.9 4.7 62 86-147 70-153 (155)
44 >2jv2_A Putative uncharacteriz 38.1 29 0.00086 15.8 4.8 62 92-156 2-65 (83)
45 >2k48_A Nucleoprotein; viral p 38.0 29 0.00086 15.8 7.2 68 6-74 31-102 (107)
46 >2ki8_A Tungsten formylmethano 37.9 29 0.00086 15.8 4.7 35 119-153 53-87 (133)
47 >2w1k_A Putative sortase; pilu 37.8 29 0.00087 15.8 4.1 35 124-158 119-153 (252)
48 >1tmo_A TMAO reductase, trimet 36.2 31 0.00092 15.6 4.9 35 119-153 56-90 (122)
49 >1cz4_A VCP-like ATPase; doubl 35.4 32 0.00094 15.6 5.8 69 86-155 79-155 (185)
50 >1r9h_A FKB-6, FK506 binding p 34.8 23 0.00067 16.5 1.9 28 118-145 65-92 (135)
51 >3i9v_3 NADH-quinone oxidoredu 34.4 33 0.00098 15.5 4.6 36 118-153 34-69 (104)
52 >2vb2_X Copper protein, cation 34.2 23 0.00067 16.5 1.9 43 114-156 43-85 (88)
53 >3g66_A Sortase C; pilus, tran 33.9 34 0.001 15.4 4.1 31 128-158 124-154 (212)
54 >2kfw_A FKBP-type peptidyl-pro 33.5 22 0.00065 16.6 1.7 23 133-155 20-42 (54)
55 >1p5q_A FKBP52, FK506-binding 32.6 35 0.001 15.3 4.9 61 85-145 40-100 (136)
56 >2dq0_A Seryl-tRNA synthetase; 32.1 36 0.0011 15.2 8.4 58 10-73 38-95 (113)
57 >2d9f_A FK506-binding protein 31.7 29 0.00087 15.8 2.1 56 85-144 33-91 (135)
58 >2pia_A Phthalate dioxygenase 31.7 30 0.00088 15.8 2.1 65 84-149 37-106 (108)
59 >2qcp_X Cation efflux system p 31.4 27 0.0008 16.0 1.9 43 114-156 35-77 (80)
60 >1cqx_A Flavohemoprotein; glob 30.5 38 0.0011 15.1 5.2 60 85-147 34-108 (110)
61 >2e7z_A Acetylene hydratase AH 29.2 40 0.0012 14.9 4.7 33 120-152 44-76 (145)
62 >1jb9_A Ferredoxin-NADP reduct 29.1 40 0.0012 14.9 3.0 61 87-147 67-155 (158)
63 >1q1c_A FK506-binding protein 28.8 41 0.0012 14.9 3.5 57 85-145 66-129 (280)
64 >2nya_A Periplasmic nitrate re 28.4 42 0.0012 14.8 4.4 34 119-152 38-71 (122)
65 >2ppn_A FK506-binding protein 28.1 42 0.0012 14.8 4.1 59 84-145 14-78 (107)
66 >2gp4_A 6-phosphogluconate deh 26.5 36 0.0011 15.2 1.8 38 115-152 102-139 (139)
67 >1eh1_A Ribosome recycling fac 26.0 46 0.0014 14.6 7.2 69 4-73 33-109 (115)
68 >1q16_A Respiratory nitrate re 25.8 46 0.0014 14.5 4.3 34 120-153 47-80 (158)
69 >2w48_A Sorbitol operon regula 24.7 49 0.0014 14.4 3.0 27 16-42 24-50 (54)
70 >3cgm_A SLYD, peptidyl-prolyl 24.5 49 0.0014 14.4 4.3 23 85-108 20-42 (56)
71 >3i0u_A Phosphothreonine lyase 23.5 51 0.0015 14.3 3.1 50 44-96 140-191 (218)
72 >1ti6_A Pyrogallol hydroxytran 22.7 53 0.0016 14.2 4.5 34 120-153 55-88 (159)
73 >1umk_A B5R, NADH-cytochrome B 22.2 54 0.0016 14.1 5.8 62 84-145 45-120 (120)
74 >2ke0_A Peptidyl-prolyl CIS-tr 22.0 55 0.0016 14.1 2.8 26 121-146 65-90 (117)
75 >2kc5_A Hydrogenase-2 operon p 22.0 55 0.0016 14.1 3.1 45 105-155 54-99 (162)
76 >3enu_A Nitrollin, putative un 21.1 57 0.0017 14.0 2.3 41 84-130 17-57 (114)
77 >3ff6_A Acetyl-COA carboxylase 21.0 57 0.0017 13.9 4.2 51 105-155 6-57 (62)
78 >1ix5_A FKBP; ppiase, isomeras 20.6 51 0.0015 14.3 1.6 25 121-145 53-77 (99)
No 1
>>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} (A:1-83)
Probab=99.91 E-value=2.4e-24 Score=175.56 Aligned_cols=83 Identities=45% Similarity=0.751 Sum_probs=80.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98431488999999999999987248999999999975176222430489998876879999999974444210472101
Q gi|254780440|r 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81 (158)
Q Consensus 2 ~~k~~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~~~ 81 (158)
|+++|||++||++|++||++|++++||+++++|++||++|||||||||++||++|+++++||.+|+.+|++|+||+++..
T Consensus 1 m~~~~lT~eG~~kL~~EL~~L~~~~rpe~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~RI~~Le~~L~~a~Iid~~~~ 80 (83)
T 1grj_A 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKM 80 (83)
T ss_dssp -CCEEEEHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECGGGS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCC
T ss_conf 97555289999999999999986122778999999986578220747899999999999899999998621276134446
Q ss_pred CCC
Q ss_conf 332
Q gi|254780440|r 82 SGD 84 (158)
Q Consensus 82 ~~~ 84 (158)
++|
T Consensus 81 ~~~ 83 (83)
T 1grj_A 81 PNN 83 (83)
T ss_dssp CCC
T ss_pred CCC
T ss_conf 898
No 2
>>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli} (A:1-82)
Probab=99.91 E-value=3.3e-24 Score=174.60 Aligned_cols=81 Identities=32% Similarity=0.477 Sum_probs=78.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98431488999999999999987248999999999975176222430489998876879999999974444210472101
Q gi|254780440|r 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81 (158)
Q Consensus 2 ~~k~~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~~~ 81 (158)
|+++|||++||++|++||++|++++||+++++|++||++|||||||+|++||++|+++++||.+|+.+|++|+||+++..
T Consensus 1 M~~~~lT~eG~~kL~~EL~~L~~v~rpei~~~i~~Ar~~GDlsENaeY~aAke~q~~le~RI~eLe~~L~~A~iid~~~~ 80 (82)
T 2p4v_A 1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQ 80 (82)
T ss_dssp CCCCEECHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99765589999999999999997031889999999885466110145677899988899999999999877632675335
Q ss_pred C
Q ss_conf 3
Q gi|254780440|r 82 S 82 (158)
Q Consensus 82 ~ 82 (158)
+
T Consensus 81 ~ 81 (82)
T 2p4v_A 81 Q 81 (82)
T ss_dssp S
T ss_pred C
T ss_conf 7
No 3
>>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus HB27} (A:1-80)
Probab=99.90 E-value=7.5e-24 Score=172.35 Aligned_cols=79 Identities=24% Similarity=0.407 Sum_probs=76.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99843148899999999999998724899999999997517622243048999887687999999997444421047210
Q gi|254780440|r 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIST 80 (158)
Q Consensus 1 M~~k~~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~~ 80 (158)
|++++|||++||++|++||++|+ ++||+++++|++||++|||||||||++||++|+++++||.+|+.+|++|+||+++.
T Consensus 1 M~~~~~lT~eG~~kL~~EL~~L~-~~rpei~~~i~eAr~~GDlsENaeY~aAke~q~~~e~RI~~Le~~L~~a~Iid~~s 79 (80)
T 2f23_A 1 MAREVKLTKAGYERLMQQLERER-ERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAVILEEGS 79 (80)
T ss_dssp --CCEEECHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCC
T ss_conf 99640049999999999999876-66588999999998706665561489999999988989999999876512135677
No 4
>>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} (A:84-158)
Probab=99.86 E-value=3.2e-22 Score=161.94 Aligned_cols=75 Identities=45% Similarity=0.884 Sum_probs=73.7
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEEEC
Q ss_conf 211136579995347652359999631013345881501317899872888887899982897199999998979
Q gi|254780440|r 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 (158)
Q Consensus 84 ~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~yi 158 (158)
++|.|||+|+++|.+++++++|+||||+|+|++.|+||+.||||+||||+++||+|+|++|+|+++|+|++|+||
T Consensus 1 ~~V~~g~~V~l~~~~~~~~~~~~iV~p~ea~~~~g~IS~~SPlG~ALlG~~~Gd~v~~~~p~g~~~~~I~~I~yi 75 (75)
T 1grj_A 1 GRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 75 (75)
T ss_dssp SBCCTTCEEEEEETTTTEEEEEEEECTTTCBGGGTEEESSSHHHHHHTTCBTTCEECC------CCEEEEEEECC
T ss_pred CEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEECCCCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEC
T ss_conf 817641389999547641799980254312365413046898999972899999899983998689999999979
No 5
>>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli} (A:52-136)
Probab=99.85 E-value=9.5e-21 Score=152.61 Aligned_cols=74 Identities=23% Similarity=0.427 Sum_probs=72.1
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCE-EEEEEEEEEE
Q ss_conf 2111365799953476523599996310133458815013178998728888878999828971-9999999897
Q gi|254780440|r 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 (158)
Q Consensus 84 ~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~-~~~~Il~I~y 157 (158)
|+|+|||+|+++|.+++++++|+||||+++|+..++||+.||||+||+|+++||+|+|++|+|. ++|+|++|+|
T Consensus 1 D~V~~Gs~V~~~~~~~~~~~~~~iV~p~ead~~~~~IS~~SPlG~ALlG~~~Gd~v~~~~p~G~~~~~~I~~I~~ 75 (85)
T 3bmb_A 1 DVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 75 (85)
T ss_dssp TBCCTTCEEEEEETTTCCEEEEEEECGGGCCCTTTEEETTSHHHHHHTTCBTTCEEEEEETTTEEEEEEEEEEEE
T ss_pred CEEEECCEEEEEECCCCCEEEEEEECCCCCCCCCCEEECCCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEE
T ss_conf 989868799999787661689999563003577886422698999972997899999998999889999999997
No 6
>>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea} (A:55-141)
Probab=99.85 E-value=7.8e-21 Score=153.16 Aligned_cols=74 Identities=26% Similarity=0.414 Sum_probs=71.6
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCE-EEEEEEEEEE
Q ss_conf 2111365799953476523599996310133458815013178998728888878999828971-9999999897
Q gi|254780440|r 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 (158)
Q Consensus 84 ~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~-~~~~Il~I~y 157 (158)
++|.|||+|++.|.+++++++|+||||+|+||..++||+.||||+||||+++||+|+|++|+|. ++|+|++|+|
T Consensus 1 ~vV~~Gs~V~~~d~~~~~~~~~~lVg~~ea~~~~~~iS~~SPlG~ALlG~~~Gd~v~~~~p~G~~~~~~I~~I~~ 75 (87)
T 2pn0_A 1 TVVTXNSTVRFRVESSAEEFXLTLVYPKDVDTSGEKISILAPVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY 75 (87)
T ss_dssp TBCCTTCEEEEEETTTCCEEEEEEECGGGCCSSSCEEETTSTTHHHHTTCBTTCEEEEECTTSSEEEEEEEEEEC
T ss_pred CEEEECCEEEEEECCCCCCEEEEECCCHHCCCCCCEEEEECHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEE
T ss_conf 989889899998656664389998180560477987988769999970998899999988999889999999986
No 7
>>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus HB27} (A:81-156)
Probab=99.84 E-value=1.3e-20 Score=151.72 Aligned_cols=73 Identities=30% Similarity=0.624 Sum_probs=71.3
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCC--EECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEE
Q ss_conf 21113657999534765235999963101334588--15013178998728888878999828971999999989
Q gi|254780440|r 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 (158)
Q Consensus 84 ~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~--~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~ 156 (158)
|+|.|||+|++.|.+++++++|+||||+++|+..+ +||+.||||+||||+++||+|+|++|+|.++|+|++|+
T Consensus 1 D~V~~gs~V~l~d~~~~~~~~~~iVgp~e~~~~~~~~~iS~~SPlG~ALlG~~~Gd~v~~~~p~g~~~~~I~~I~ 75 (76)
T 2f23_A 1 EVIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPMKISDASPMGKALLGHRVGDVLSLDTPKGKREFRVVAIH 75 (76)
T ss_dssp CCCCTTCEEEEECTTTCCEEEEEEECGGGCBTTSSSEEEETTSHHHHHHTTCCTTCEEEEEETTEEEEEEEEEEE
T ss_pred CEEEEEEEEEEEECCCCEEEEEEEECCCCCCHHHCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEE
T ss_conf 579987799998436760499999077536843348743789988999728999999999849987899999987
No 8
>>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli} (A:83-158)
Probab=99.83 E-value=1.8e-20 Score=150.79 Aligned_cols=74 Identities=35% Similarity=0.624 Sum_probs=71.4
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEEEC
Q ss_conf 211136579995347652359999631013345881501317899872888887899982897199999998979
Q gi|254780440|r 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 (158)
Q Consensus 84 ~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~yi 158 (158)
++|.|||+|++.| +++++++|+||||+++|++.++||+.||||+||||+++||+|+|++|+|.++|+|++|+|+
T Consensus 1 G~V~~Gs~V~l~~-~~~~~~~~~iV~~~~a~~~~~~IS~~SPlG~ALlG~~~Gd~v~~~~p~g~~~~~I~~V~~~ 74 (76)
T 2p4v_A 1 GKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 74 (76)
T ss_dssp SSCSSSCEEEEEC-TTCCCEEEEBCCSTTCCSSSCCBCTTSHHHHHSTTCCTTCEEEEECSSCEEEEEEEEEECC
T ss_pred CCCCCCEEEEEEE-CCCCCEEEEEECHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEEEC
T ss_conf 6435770999960-5776218987550543135776578898999970899999899980898789999999943
No 9
>>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli} (A:1-51)
Probab=87.27 E-value=0.55 Score=26.81 Aligned_cols=50 Identities=18% Similarity=0.166 Sum_probs=36.4
Q ss_pred CCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9984-314889999999999999872489999999999751762224304899988768799999999744442104721
Q gi|254780440|r 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIS 79 (158)
Q Consensus 1 M~~k-~~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~ 79 (158)
|+.. |++|...++||+.=++.+.....+ -+..|+..|.||+||++.
T Consensus 1 M~~P~I~is~~D~~RLe~Lle~~~~~~~~---------------------------------~a~~Le~EL~RA~vV~p~ 47 (51)
T 3bmb_A 1 MSRPTIIINDLDAERIDILLEQPAYAGLP---------------------------------IADALNAELDRAQMCSPE 47 (51)
T ss_dssp -CCCCCEEEHHHHHHHHHHHHSGGGTTCH---------------------------------HHHHHHHHHHTCEEECGG
T ss_pred CCCCCEECCHHHHHHHHHHHHCHHCCCCH---------------------------------HHHHHHHHHCCCEEECCC
T ss_conf 99997765288999999998563223767---------------------------------899999987488998974
Q ss_pred CCCC
Q ss_conf 0133
Q gi|254780440|r 80 TMSG 83 (158)
Q Consensus 80 ~~~~ 83 (158)
.+|.
T Consensus 48 ~iP~ 51 (51)
T 3bmb_A 48 EMPH 51 (51)
T ss_dssp GCCT
T ss_pred CCCC
T ss_conf 5899
No 10
>>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* (A:1-99)
Probab=79.17 E-value=3.1 Score=22.05 Aligned_cols=65 Identities=22% Similarity=0.266 Sum_probs=47.6
Q ss_pred CCCCCCCCEEEEEECCCCCE--EEEEEECHHHCCCCCCEEC--CCCHHHHHHCCCCCCCEEEEEC-CCCE
Q ss_conf 32111365799953476523--5999963101334588150--1317899872888887899982-8971
Q gi|254780440|r 83 GDRIAFGATVSLVEKNSGDK--KNYQIVGDQEADVQSGLVS--ISSPIARALIGKELGDIISVNA-PGGE 147 (158)
Q Consensus 83 ~~~V~~Gs~V~l~d~~~~~~--~~~~lVg~~e~d~~~~~IS--~~SPlG~ALlG~~~Gd~V~v~~-p~G~ 147 (158)
.-....|..|.+.....++. ..|+++.+...+-..-.|- ..++....|...++||.+.+.. |.|.
T Consensus 28 ~~~~~pGQ~v~l~~~~~~~~~~r~ysi~s~~~~~~~~~~vk~~~~G~~t~~l~~l~~Gd~i~i~~gP~G~ 97 (99)
T 2qdx_A 28 GLRFKTGQFVMIGLEVDGRPLMRAYSIASPNYEEHLEFFSIKVPDGPLTSRLQHLKEGDELMVSRKPTGT 97 (99)
T ss_dssp TCCCCTTCEEEEEEEETTEEEEEEEECCSCTTSSEEEEEEECCTTCTTHHHHTTCCTTCEEEECSCCBCS
T ss_pred CCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCEEEEEEEEEECCCCCEECCCCCCCEEEEECCCCCC
T ss_conf 8989999359999611990764000002555666326789998503531011023567413662588884
No 11
>>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} (A:102-205)
Probab=78.35 E-value=4 Score=21.28 Aligned_cols=63 Identities=16% Similarity=0.231 Sum_probs=45.9
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEE--CCCCHHHHHHCC-CCCCCEEEEECCCCE
Q ss_conf 111365799953476523599996310133458815--013178998728-888878999828971
Q gi|254780440|r 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV--SISSPIARALIG-KELGDIISVNAPGGE 147 (158)
Q Consensus 85 ~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~I--S~~SPlG~ALlG-~~~Gd~V~v~~p~G~ 147 (158)
....|..|.+.-.+......|++..+.+.+...=.| ....+....|+. .++||.|.+.-|.|.
T Consensus 37 ~~~~GQ~v~i~~~~~~~~~~~s~ss~~~~~~~~i~v~~~~~G~~s~~l~~~l~~Gd~i~v~gP~G~ 102 (104)
T 1krh_A 37 HFLAGQYVNVTLPGTTETRSYSFSSQPGNRLTGFVVRNVPQGKMSEYLSVQAKAGDKMSFTGPFGS 102 (104)
T ss_dssp CCCTTCEEEEECTTSSCEEEEECCSCTTCSEEEEEEECCTTCHHHHHHHTTCCTTCEEEEEEEECS
T ss_pred CCCCCCEEEEEECCCCEEEEEEEECCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCEEEECCCCCC
T ss_conf 889988899997799623546540799884899999992588864567873689999873278886
No 12
>>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} (A:1-99)
Probab=76.89 E-value=5.8 Score=20.28 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=45.5
Q ss_pred CCCCCCEEEEEECCCCC--EEEEEEECHHHCCCCCCEEC--CCCHHHHHHCCCCCCCEEEEECCCCEE
Q ss_conf 11136579995347652--35999963101334588150--131789987288888789998289719
Q gi|254780440|r 85 RIAFGATVSLVEKNSGD--KKNYQIVGDQEADVQSGLVS--ISSPIARALIGKELGDIISVNAPGGEK 148 (158)
Q Consensus 85 ~V~~Gs~V~l~d~~~~~--~~~~~lVg~~e~d~~~~~IS--~~SPlG~ALlG~~~Gd~V~v~~p~G~~ 148 (158)
.-..|..|.+.....++ ...|+++.+...+...-.|- ..++.-+.|...++||.|.+.-|.|.-
T Consensus 30 ~~~~GQ~i~i~~~~~g~~~~r~ySi~s~~~~~~~~~~i~~~~~G~~s~~l~~l~~Gd~i~i~gP~G~f 97 (99)
T 1fdr_A 30 PFTAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGF 97 (99)
T ss_dssp CCCTTCEEEEEECC---CEEEEEECCSCTTCSSEEEEEECCTTCSSHHHHHTCCTTCEEEEESSCBCC
T ss_pred CCCCCCEEEEEEECCCCEEEEECEEECCCCCCCEEEEEEEECCCCCCHHHHHHCCCCEEEEECCCCCC
T ss_conf 87998259999623991775506541589999569999996798630666752689789973267874
No 13
>>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} (A:1-70,A:125-196)
Probab=76.57 E-value=5.9 Score=20.23 Aligned_cols=29 Identities=34% Similarity=0.399 Sum_probs=24.4
Q ss_pred CCCEECCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 58815013178998728888878999828
Q gi|254780440|r 116 QSGLVSISSPIARALIGKELGDIISVNAP 144 (158)
Q Consensus 116 ~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p 144 (158)
..+.=....-+=.+|.|.++||.++|.+|
T Consensus 35 ~lG~~~~i~g~eeaL~Gmk~Ge~~~i~i~ 63 (142)
T 2kfw_A 35 LHGHGSLISGLETALEGHEVGDKFDVAVG 63 (142)
T ss_dssp ESSSSSSCHHHHHHHSSSCTTCEEEEECS
T ss_pred EECCCCCCHHHHHHHCCCCCCCEEEEEEC
T ss_conf 95799854579886326733402678721
No 14
>>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chaperone, isomerase, rotamase, ribonucleoprotein; 3.40A {Thermotoga maritima} PDB: 3gu0_A (X:146-239)
Probab=74.23 E-value=6.8 Score=19.84 Aligned_cols=39 Identities=26% Similarity=0.433 Sum_probs=28.2
Q ss_pred CEECCCCHHHHHHCCCCCCCEEEEECCC-CE-EE--EEEEEEE
Q ss_conf 8150131789987288888789998289-71-99--9999989
Q gi|254780440|r 118 GLVSISSPIARALIGKELGDIISVNAPG-GE-KT--YEILQVL 156 (158)
Q Consensus 118 ~~IS~~SPlG~ALlG~~~Gd~V~v~~p~-G~-~~--~~Il~I~ 156 (158)
-.+.....+-.+|+|+++||++++..+- |. .. ++|.+|.
T Consensus 39 ~~lg~~~gf~~~L~G~k~Ge~~~~~~~fagk~~~f~v~i~~vk 81 (94)
T 3gty_X 39 ISEDEDRPFVKDLVGKKKGDVVEIEREYEGKKYTYKLEVEEVY 81 (94)
T ss_dssp CCSSCCCTTHHHHTTCCTTCEEEEEEEETTEEEEEEEEEEEEE
T ss_pred ECCCCHHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEEEECE
T ss_conf 0476200117764377678523102245687215899872011
No 15
>>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea} (A:1-54)
Probab=74.17 E-value=1.7 Score=23.72 Aligned_cols=47 Identities=26% Similarity=0.301 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 43148899999999999998724899999999997517622243048999887687999999997444421047210133
Q gi|254780440|r 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83 (158)
Q Consensus 4 k~~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~~~~~ 83 (158)
+|+||...++||+.=++.+.. .+ .+ -+..|+..|.||+||++..+|.
T Consensus 8 ~I~Is~~D~~RLe~Lle~~~~----------------~~----~~-------------~a~~L~~EL~RA~VV~p~~iPP 54 (54)
T 2pn0_A 8 KIXISSLDAERLEILLETLSQ----------------NA----FP-------------GRDDLEAELARAEVVDPEEIPP 54 (54)
T ss_dssp CCEEEHHHHHHHHHHHHHTTT----------------CC----CT-------------THHHHHHHHHTCEEECGGGSCT
T ss_pred CEEEEHHHHHHHHHHHHCHHC----------------CC----CH-------------HHHHHHHHHCCCEEECCCCCCC
T ss_conf 768638889999999853132----------------48----27-------------8999999866879989634899
No 16
>>2gpj_A Siderophore-interacting protein; ZP_00813641.1, structural genomics, PSI, protein structure initiative; HET: FAD; 2.20A {Shewanella putrefaciens cn-32} (A:1-107)
Probab=69.65 E-value=7 Score=19.77 Aligned_cols=64 Identities=16% Similarity=0.334 Sum_probs=45.2
Q ss_pred CCCCCCCEEEEEECCCCC---EEEEEEECHHHCCCC-CCEEC-CCCHHHHHHCCCCCCCEEEEECCCCE
Q ss_conf 211136579995347652---359999631013345-88150-13178998728888878999828971
Q gi|254780440|r 84 DRIAFGATVSLVEKNSGD---KKNYQIVGDQEADVQ-SGLVS-ISSPIARALIGKELGDIISVNAPGGE 147 (158)
Q Consensus 84 ~~V~~Gs~V~l~d~~~~~---~~~~~lVg~~e~d~~-~~~IS-~~SPlG~ALlG~~~Gd~V~v~~p~G~ 147 (158)
-....|..|.+.....+. ...|+++.+...+-. .-.+- ...++...|...++||.|.+.-|.|.
T Consensus 37 ~~~~~Gq~v~l~~~~~~~~~~~r~ysi~s~~~~~~~~~~v~~~~~G~~s~~l~~l~~Gd~v~i~gP~G~ 105 (107)
T 2gpj_A 37 PADQESAYIKLLFPQAGERPLXRTYTIRQQRDDEIDVDFVLHDTDGPASSWAKTAQVGELIQIGGPGLK 105 (107)
T ss_dssp CSCCTTCEEEEEECCTTSCCEEEEEECCEEETTEEEEEEECCSSCCHHHHHHHHCCTTCEEEEEEEECC
T ss_pred CCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCC
T ss_conf 789989569999658998614602444786446745889981588625899963763676999827877
No 17
>>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} (A:133-254)
Probab=68.31 E-value=5.3 Score=20.53 Aligned_cols=25 Identities=8% Similarity=0.231 Sum_probs=20.9
Q ss_pred ECCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 5013178998728888878999828
Q gi|254780440|r 120 VSISSPIARALIGKELGDIISVNAP 144 (158)
Q Consensus 120 IS~~SPlG~ALlG~~~Gd~V~v~~p 144 (158)
-.....+..+|+|.++|+.+++.+|
T Consensus 60 ~~~i~g~~~~l~gmk~Ge~~~~~i~ 84 (122)
T 1w26_A 60 GRXIPGFEDGIKGHKAGEEFTIDVT 84 (122)
T ss_dssp CCSCTTHHHHSSSCCSSCEEEEEEE
T ss_pred CCCCCCHHHHHHHHCCCCEEEEEEE
T ss_conf 8766005666554127866899985
No 18
>>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain, alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} (B:1-103)
Probab=65.02 E-value=7.6 Score=19.55 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=44.2
Q ss_pred CCCCCCCEEEEEECCCC--CEEEEEEECHHHCCCCCCEECC------CCHHHHHHCCCCCCCEEEEECCCCE
Q ss_conf 21113657999534765--2359999631013345881501------3178998728888878999828971
Q gi|254780440|r 84 DRIAFGATVSLVEKNSG--DKKNYQIVGDQEADVQSGLVSI------SSPIARALIGKELGDIISVNAPGGE 147 (158)
Q Consensus 84 ~~V~~Gs~V~l~d~~~~--~~~~~~lVg~~e~d~~~~~IS~------~SPlG~ALlG~~~Gd~V~v~~p~G~ 147 (158)
-....|..|.+...+.+ ....|++..+. .+.+.|++ .++..+.|...++||.|.+.-|.|.
T Consensus 32 ~~~~pGQ~i~i~~~~~~~~~~r~ys~~s~~---~~~~~l~~~vk~~~~G~~s~~l~~l~~Gd~i~i~gP~G~ 100 (103)
T 1ep3_B 32 EMDLPGQFLHLAVPNGAMLLRRPISISSWD---KRAKTCTILYRIGDETTGTYKLSKLESGAKVDVMGPLGN 100 (103)
T ss_dssp GCCSTTCEEEECCSCTTCCSCEEEECCEEE---TTTTEEEEEEECCCTTSHHHHHHTCCTTCEEEEEEEESB
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEECCCC---CCCCEEEEEEEECCCCCHHHHHHCCCCCCEEEEECCCCC
T ss_conf 678999508999478992889988956248---999889999998899757899854899899999746566
No 19
>>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain protein, rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A (A:1-64,A:121-158)
Probab=64.71 E-value=9.8 Score=18.83 Aligned_cols=36 Identities=25% Similarity=0.503 Sum_probs=27.2
Q ss_pred CCCCHHHHHHCCCCCCCEEEEECC-------CC-EE--EEEEEEEE
Q ss_conf 013178998728888878999828-------97-19--99999989
Q gi|254780440|r 121 SISSPIARALIGKELGDIISVNAP-------GG-EK--TYEILQVL 156 (158)
Q Consensus 121 S~~SPlG~ALlG~~~Gd~V~v~~p-------~G-~~--~~~Il~I~ 156 (158)
.+..-+-.||+|.++|+++++.+| +| +. +++|++|+
T Consensus 35 ~vipGleeaL~GMk~GE~~~~~i~p~~ayG~~g~~~~~~v~~~~~~ 80 (102)
T 3cgm_A 35 NLIPGLEEALEGREEGEAFQAHVPAEKAYGLAGKDLDFQVEVVKVR 80 (102)
T ss_dssp SSCHHHHHHHTTCBTTCEEEEEECGGGTTCTTTCCEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHCCCCCCCEEEEEHHHCCCCCCCEEEEEEEEEEEE
T ss_conf 7677899987532346431587204430456798789999999987
No 20
>>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} (A:1-69,A:125-171)
Probab=61.58 E-value=12 Score=18.20 Aligned_cols=40 Identities=30% Similarity=0.420 Sum_probs=29.3
Q ss_pred CCEECCCCHHHHHHCCCCCCCEEEEECCC-------CE---EEEEEEEEE
Q ss_conf 88150131789987288888789998289-------71---999999989
Q gi|254780440|r 117 SGLVSISSPIARALIGKELGDIISVNAPG-------GE---KTYEILQVL 156 (158)
Q Consensus 117 ~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~-------G~---~~~~Il~I~ 156 (158)
.|.=.+...+-.+|+|.++||..++.+|- |. .+++|..|+
T Consensus 36 lG~g~vIpGleeaL~GMk~GE~~~i~Vpp~~aYG~ag~~~~~~~~~~~~~ 85 (116)
T 2k8i_A 36 HGHGSLISGLETALEGHEVGDKFDVAVGANDAYGLAGQNLKFNVEVVAIR 85 (116)
T ss_dssp TTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCSCCCEEEEEEEEEEEE
T ss_pred ECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEEEEEEEE
T ss_conf 27720106899876433466006999612004577898889999999997
No 21
>>1e32_A P97; membrane fusion; HET: ADP; 2.9A {Mus musculus} (A:1-108)
Probab=60.67 E-value=13 Score=18.10 Aligned_cols=63 Identities=21% Similarity=0.290 Sum_probs=41.8
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEECHHH-CCCCCCEECCCCHHHHHHCCCCCCCEEEEEC
Q ss_conf 4721013321113657999534765235999963101-3345881501317899872888887899982
Q gi|254780440|r 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLVSISSPIARALIGKELGDIISVNA 143 (158)
Q Consensus 76 v~~~~~~~~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e-~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~ 143 (158)
++|..+..=.+..|..|.|+ |+..+-.+|.++. .+...+.|.+. -+.+.=+|-..||.|.+.-
T Consensus 41 l~p~~m~~L~l~~GD~V~I~----Gkr~t~a~v~~~~~~~~~~~~Irid-~~~R~N~gv~iGD~V~V~~ 104 (108)
T 1e32_A 41 LSQPKMDELQLFRGDTVLLK----GKKRREAVCIVLSDDTCSDEKIRMN-RVVRNNLRVRLGDVISIQP 104 (108)
T ss_dssp ECHHHHHHTTCCTTCEEEEE----CSTTCEEEEEEEECTTSCSSEEEEC-HHHHHHTTCCTTCEEEEEE
T ss_pred ECHHHHHHCCCCCCCEEEEE----CCCCCEEEEEECCCCCCCCCEEEEC-HHHHHHCCCCCCCEEEEEE
T ss_conf 89999987699999989998----3898659999737666889979966-9999661878999799998
No 22
>>2w1j_A Putative sortase, sortase C-1; pilus, pneumococcus, pathogenicity, transferase; 1.24A {Streptococcus pneumoniae} (A:)
Probab=58.13 E-value=14 Score=17.83 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=30.6
Q ss_pred CCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEEEC
Q ss_conf 317899872888887899982897199999998979
Q gi|254780440|r 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 (158)
Q Consensus 123 ~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~yi 158 (158)
..++=..|-..+.||.|.+..+++.+.|+|.++..+
T Consensus 120 ~~~~F~~L~~l~~Gd~i~v~~~~~~~~Y~V~~~~~v 155 (212)
T 2w1j_A 120 TAKMFTDLTKLKVGDKFYVHNIKEVMAYQVDQVKVI 155 (212)
T ss_dssp SCCTTGGGGGCCTTCEEEEECSSCEEEEEEEEEEEE
T ss_pred CCCCHHCHHHCCCCCEEEEEECCEEEEEEEEEEEEE
T ss_conf 772000677647799899998998999999899997
No 23
>>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} (A:149-253)
Probab=57.54 E-value=14 Score=17.77 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=40.2
Q ss_pred CCCCCCEEEEEECCCCCE---EEEEEECHHHCCCCCCEEC------CCCHHHHHHCC-CCCCCEEEEECCCCE
Q ss_conf 111365799953476523---5999963101334588150------13178998728-888878999828971
Q gi|254780440|r 85 RIAFGATVSLVEKNSGDK---KNYQIVGDQEADVQSGLVS------ISSPIARALIG-KELGDIISVNAPGGE 147 (158)
Q Consensus 85 ~V~~Gs~V~l~d~~~~~~---~~~~lVg~~e~d~~~~~IS------~~SPlG~ALlG-~~~Gd~V~v~~p~G~ 147 (158)
....|.-|.+.....+.. ..|+++.+ ++..+.+. ...++...|+. .++||+|.+.-|.|.
T Consensus 34 ~~~pGQ~v~i~~~~~~~~~~~r~~~~~~~---~~~~~~l~~~vk~~~~G~~s~~l~~~l~~Gd~i~i~gP~G~ 103 (105)
T 1gvh_A 34 EYRPGQYLGVWLKPEGFPHQEIRQYSLTR---KPDGKGYRIAVKREEGGQVSNWLHNHANVGDVVKLVAPAGD 103 (105)
T ss_dssp CCCTTCEEEEEECCTTCSSCEEEEEECCS---CCCSSCEEEEEECCTTCHHHHHHHHTCCTTCEEEEEEEECS
T ss_pred CCCCCCCEEEEECCCCCCCCCEEEEEECC---CCCCCEEEEEEEEECCCCHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 80989867999566898887257678657---89999399999994299778999750899998999825787
No 24
>>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} (A:1-113)
Probab=56.19 E-value=7.5 Score=19.57 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=44.6
Q ss_pred CCCCCEEEEEECCCCCEEEEEEECHH-HCCCCCCEEC--CCCHHHHHHCC-CCCCCEEEEECCCCEE
Q ss_conf 11365799953476523599996310-1334588150--13178998728-8888789998289719
Q gi|254780440|r 86 IAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGLVS--ISSPIARALIG-KELGDIISVNAPGGEK 148 (158)
Q Consensus 86 V~~Gs~V~l~d~~~~~~~~~~lVg~~-e~d~~~~~IS--~~SPlG~ALlG-~~~Gd~V~v~~p~G~~ 148 (158)
...|-.|.+...+.+....|++.... +.+...=.|- -.++....|+. .++||+|.+.-|-|.-
T Consensus 44 ~~pGQ~v~l~~~~~~~~r~yt~~s~~~~~~~l~~~vk~~~~G~~s~~l~~~l~~Gd~v~i~gP~G~f 110 (113)
T 1tvc_A 44 FEPGQFMDLTIPGTDVSRSYSPANLPNPEGRLEFLIRVLPEGRFSDYLRNDARVGQVLSVKGPLGVF 110 (113)
T ss_dssp CCSCCEEEECTTSCSSSEEECCBCCSSSSCCEEEEECCCTTSSSHHHHHHHSSSSSEEEEEEEECCC
T ss_pred CCCCEEEEEEECCCCEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 9988159999899560366563578888998999983035622566676400243331001124553
No 25
>>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* (A:1-112)
Probab=56.13 E-value=15 Score=17.62 Aligned_cols=63 Identities=17% Similarity=0.191 Sum_probs=40.0
Q ss_pred CCCCCCEEEEEECCCC---CEEEEEEECHHHCCCCCCEE--CCCCHHHHHHCCCCCCCEEEEEC-CCCE
Q ss_conf 1113657999534765---23599996310133458815--01317899872888887899982-8971
Q gi|254780440|r 85 RIAFGATVSLVEKNSG---DKKNYQIVGDQEADVQSGLV--SISSPIARALIGKELGDIISVNA-PGGE 147 (158)
Q Consensus 85 ~V~~Gs~V~l~d~~~~---~~~~~~lVg~~e~d~~~~~I--S~~SPlG~ALlG~~~Gd~V~v~~-p~G~ 147 (158)
....|..|.+...+.+ ....|++..+...+...-.| ....+....|-..++||.|.+.- |.|.
T Consensus 43 ~~~pGQ~v~l~~~~~~~~~~~r~~s~~s~~~~~~~~~~vk~~~~G~~s~~l~~l~~Gd~v~~~gpp~G~ 111 (112)
T 2bgi_A 43 RFRSGEFVMIGLLDDNGKPIMRAYSIASPAWDEELEFYSIKVPDGPLTSRLQHIKVGEQIILRPKPVGT 111 (112)
T ss_dssp CCCTTCEEEEEEECTTSCEEEEEEECCSCTTCSEEEEEEECCTTCTTHHHHTTCCTTCEEEEEEEEECS
T ss_pred CCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCC
T ss_conf 889998479995377992775665547799898745556995058754045553256643112598753
No 26
>>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreductase; HET: FAD; 1.56A {Physarum polycephalum} (A:1-110)
Probab=54.05 E-value=16 Score=17.41 Aligned_cols=61 Identities=18% Similarity=0.334 Sum_probs=43.9
Q ss_pred CCCCCCCEEEEEECCCCC--EEEEEEECHHHCCCCCCEEC------CCCHHHHHHCCCCCCCEEEEECCCCE
Q ss_conf 211136579995347652--35999963101334588150------13178998728888878999828971
Q gi|254780440|r 84 DRIAFGATVSLVEKNSGD--KKNYQIVGDQEADVQSGLVS------ISSPIARALIGKELGDIISVNAPGGE 147 (158)
Q Consensus 84 ~~V~~Gs~V~l~d~~~~~--~~~~~lVg~~e~d~~~~~IS------~~SPlG~ALlG~~~Gd~V~v~~p~G~ 147 (158)
.....|.-|.+.....++ ...|+++... ...+.|. -.++....|...++||.|.+.-|.|.
T Consensus 40 ~~~~~Gq~i~i~~~~~~~~~~R~yT~~s~~---~~~~~l~i~vk~~~~G~~s~~l~~l~~Gd~v~i~gP~G~ 108 (110)
T 2eix_A 40 VGLPIGQHMSVKATVDGKEIYRPYTPVSSD---DEKGYFDLIIKVYEKGQMSQYIDHLNPGDFLQVRGPKGQ 108 (110)
T ss_dssp CCCCTTCEEEEEEEETTEEEEEEECCCSCT---TCCSEEEEEEECCTTCHHHHHHHTCCTTCEEEEEEEECS
T ss_pred CCCCCCEEEEEEECCCCCCEECCCCCCCCC---CCCCEEEEEEEECCCCCCCCCHHHCCCCEEEEEECCCCC
T ss_conf 589875289997346775154033455578---899889999996589887746322465227863168886
No 27
>>3is6_A Putative permease protein, ABC transporter; domain, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.95A {Porphyromonas gingivalis W83} (A:)
Probab=52.84 E-value=17 Score=17.28 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=34.5
Q ss_pred CCEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEE
Q ss_conf 8815013178998728888878999828971999999989
Q gi|254780440|r 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 (158)
Q Consensus 117 ~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~ 156 (158)
.+.+=+..-+++.++|-.+|+.|.+..+.+...|+|+-|-
T Consensus 107 ~~~vvi~~~~A~~~f~~~iG~~i~~~~~~~~~~~~VvGV~ 146 (244)
T 3is6_A 107 NXTCLISESLARKXGGDVLGKRLRPAESKSDRAITIGGVF 146 (244)
T ss_dssp TTEEEEEHHHHHHTTSCCTTCEEEETTCCSSCCEEEEEEE
T ss_pred CCEEEECHHHHHHHCCCCCCCEEEECCCCCCCCEEEEEEE
T ss_conf 9989989999998536555777986235788741999994
No 28
>>1ses_A Seryl-tRNA synthetase; ligase(synthetase); HET: AHX AMP; 2.50A {Thermus thermophilus} (A:25-107)
Probab=51.41 E-value=18 Score=17.14 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999987248999999999975176222430489998876879999999974444
Q gi|254780440|r 9 SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72 (158)
Q Consensus 9 ~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~ 72 (158)
-+-+..+..+++.|.. +|-.+.+.|+.+...+.-.--++...-+.+...++.....++..+..
T Consensus 10 d~~~r~l~~~~~~l~~-~rn~~sk~I~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~~~~~~~ 72 (83)
T 1ses_A 10 DREVQELKKRLQEVQT-ERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEA 72 (83)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999-99999999753251548999999999999999988679999887766
No 29
>>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus pyogenes serotype M1} PDB: 3fn6_A 3fn7_A (A:)
Probab=51.00 E-value=18 Score=17.10 Aligned_cols=29 Identities=21% Similarity=0.085 Sum_probs=25.0
Q ss_pred HHCCCCCCCEEEEECCCCEEEEEEEEEEE
Q ss_conf 87288888789998289719999999897
Q gi|254780440|r 129 ALIGKELGDIISVNAPGGEKTYEILQVLW 157 (158)
Q Consensus 129 ALlG~~~Gd~V~v~~p~G~~~~~Il~I~y 157 (158)
.|--.+.||.|.+..+++.+.|+|.++..
T Consensus 95 ~L~~l~~gd~i~v~~~~~~y~Y~V~~~~~ 123 (187)
T 3fn5_A 95 PLERAQNGMSIYLTDKEKIYEYIIKDVFT 123 (187)
T ss_dssp GGGGCCTTCEEEEECSSEEEEEEEEEEEE
T ss_pred HHHHCCCCCEEEEEECCEEEEEEEEEEEE
T ss_conf 08862479889999898699999988999
No 30
>>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} (A:)
Probab=50.45 E-value=5.9 Score=20.26 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=22.2
Q ss_pred CEECCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 815013178998728888878999828
Q gi|254780440|r 118 GLVSISSPIARALIGKELGDIISVNAP 144 (158)
Q Consensus 118 ~~IS~~SPlG~ALlG~~~Gd~V~v~~p 144 (158)
+.-.+...+-.+|.|.++|+..++.+|
T Consensus 62 g~~~~~~g~~~~l~gmk~Ge~~~~~i~ 88 (113)
T 1hxv_A 62 GSNSFIKGFETGLIAMKVNQKKTLALT 88 (113)
T ss_dssp TSSCSCTTHHHHHHTSCSSEEEEECCC
T ss_pred CCCCCCCCHHHHHCCCCCCCEEEEEEC
T ss_conf 687656358886388758978999978
No 31
>>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus VF5} (A:1-112)
Probab=49.32 E-value=19 Score=16.93 Aligned_cols=63 Identities=19% Similarity=0.214 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999872489999999999751762224--304899988768799999999744442
Q gi|254780440|r 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN--AEYQAAKELQNLNEGRMAELENIITRA 73 (158)
Q Consensus 10 ~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~EN--aeY~aAke~q~~~~~ri~~L~~~L~~A 73 (158)
+-+.++..+++.|.. ++-.+.+.|..+...|+-.+. ++-..-+++...++.....++..+...
T Consensus 37 ~~~r~~~~~~~~l~~-~~n~~sk~i~~~k~~~~e~~~l~~e~~~lk~~l~~le~~~~~~~~~~~~~ 101 (112)
T 2dq3_A 37 KRRREIIKRLEALRS-ERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNT 101 (112)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999-99999999999876788899999999999999998899999999999999
No 32
>>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} (A:152-257)
Probab=49.04 E-value=1.8 Score=23.48 Aligned_cols=53 Identities=19% Similarity=0.309 Sum_probs=32.0
Q ss_pred CCCCCCCEEEEEECCC--C------CEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 2111365799953476--5------23599996310133458815013178998728888878999828
Q gi|254780440|r 84 DRIAFGATVSLVEKNS--G------DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 (158)
Q Consensus 84 ~~V~~Gs~V~l~d~~~--~------~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p 144 (158)
..+..|..|++..... | ...-+.+ ..+.-.....+..||+|.++|+.+++.+|
T Consensus 8 ~~~~~gD~V~v~y~~~~dG~~~~~~~~~~~~~--------~~g~~~~~~g~~~~l~gmk~Ge~~~~~i~ 68 (106)
T 1t11_A 8 EAAENGKRVSIDFVGSIDGVEFEGGKAENFPL--------EMGAGRMIPGFEDGIVGKTKGMEFVIDVT 68 (106)
T ss_dssp CCCCTTCEEEEEEEEESSSSCCTTCEEEEEEE--------ETTSCCBSTTSGGGTTTCCSSCCCCEEEE
T ss_pred HHHCCCCEEEEEEEEEECCCCCCCCCCCCEEE--------EECCCCCCHHHHHHHCCCCCCCEEEEEEE
T ss_conf 55445878999878756684245775677389--------95688666005554201345550478886
No 33
>>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} (A:)
Probab=48.40 E-value=17 Score=17.36 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=33.3
Q ss_pred CCCCCCEEEEEEC---CCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf 1113657999534---765235999963101334588150131789987288888789998289
Q gi|254780440|r 85 RIAFGATVSLVEK---NSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 (158)
Q Consensus 85 ~V~~Gs~V~l~d~---~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~ 145 (158)
.+..|++|++... .+|+...=+.-.........+.-....-+-.+|+|.++|+.+.+.+|-
T Consensus 5 ~~~~gd~V~v~y~~~l~~G~~~d~t~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~ip~ 68 (102)
T 2pbc_A 5 KSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 68 (102)
T ss_dssp CCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECG
T ss_pred CCCCCCEEEEEEEEEECCCCEEEEEEEECCCCEECCCCEEECCCHHHHHCCCCCCCEEEEEECH
T ss_conf 7999999999999998489899873730112100268641023232253131389746999898
No 34
>>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A (A:)
Probab=47.90 E-value=20 Score=16.79 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=33.7
Q ss_pred CCCCCCEEEEEEC---CCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf 1113657999534---765235999963101334588150131789987288888789998289
Q gi|254780440|r 85 RIAFGATVSLVEK---NSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 (158)
Q Consensus 85 ~V~~Gs~V~l~d~---~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~ 145 (158)
.+..|++|++... .++.... .........+.-....-+..+|.|.++|+.+.+.+|.
T Consensus 29 ~~~~gd~V~v~y~~~l~dg~~~~----~~~~~~~~~~~~~~i~G~~~~l~~M~~Ge~~~~~ipp 88 (118)
T 2awg_A 29 RPVKGQVVTVHLQTSLENGTRVQ----EEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADS 88 (118)
T ss_dssp CCCTTSEEEEEEEEECTTSCEEE----EEEEEEEETTSSCSCHHHHHHGGGSCTTCEEEEEECG
T ss_pred CCCCCCEEEEEEEEEECCCCEEC----CCEEEEEEEECCCCHHHHHHHHCCCCCCCEEEEEECH
T ss_conf 89988999999999988898963----5606999950675404665565276323427997199
No 35
>>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} (A:70-124)
Probab=46.16 E-value=22 Score=16.62 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=20.2
Q ss_pred CCCCCCEEEEECCCCEEEEEEEEEE
Q ss_conf 8888878999828971999999989
Q gi|254780440|r 132 GKELGDIISVNAPGGEKTYEILQVL 156 (158)
Q Consensus 132 G~~~Gd~V~v~~p~G~~~~~Il~I~ 156 (158)
--++|..+....|+|...++|.+|.
T Consensus 20 ~levG~~~~~~~~~G~~~~~V~~v~ 44 (55)
T 2k8i_A 20 ELQVGMRFLAETDQGPVPVEITAVE 44 (55)
T ss_dssp CCCTTCEEEEEETTEEEEEEEEEEC
T ss_pred CCCCCCEEEEECCCCCEEEEEEEEC
T ss_conf 7788729997458882779999981
No 36
>>1vlo_A Aminomethyltransferase; NP417381, tetrahydrofolate-dependent) of glycine cleavage system, structural genomics, JCSG; HET: MSE; 1.70A {Escherichia coli K12} (A:290-366)
Probab=45.81 E-value=5.9 Score=20.23 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=29.7
Q ss_pred CCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEE
Q ss_conf 0131789987288888789998289719999999
Q gi|254780440|r 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154 (158)
Q Consensus 121 S~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~ 154 (158)
+...++|-|++-..+|+.+++.++++....+|++
T Consensus 43 ~l~~~Iala~v~~~~G~~~~v~~~g~~~~A~Vv~ 76 (77)
T 1vlo_A 43 TLGYSIALARVPEGIGETAIVQIRNREXPVKVTK 76 (77)
T ss_dssp TTTEEEEEEEECTTCCSEEEEEETTEEEEEEEEC
T ss_pred HCCCEEEEEEEECCCCCEEEEEECCEEEEEEEEC
T ss_conf 2196799999844569979999999999999967
No 37
>>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfamily, oxidoreductase; 2.20A {Escherichia coli} (A:1-96)
Probab=45.24 E-value=10 Score=18.67 Aligned_cols=63 Identities=19% Similarity=0.231 Sum_probs=43.3
Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECC----CCHHHHHHCC-CCCCCEEEEECCCCE
Q ss_conf 3211136579995347652359999631013345881501----3178998728-888878999828971
Q gi|254780440|r 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI----SSPIARALIG-KELGDIISVNAPGGE 147 (158)
Q Consensus 83 ~~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~----~SPlG~ALlG-~~~Gd~V~v~~p~G~ 147 (158)
.-....|-.|.+.. +.+....|+|..+...+-.- .|.+ ..++.+.|+. .++||.|.+.-|-|.
T Consensus 27 ~~~~~pGQ~v~l~~-~~~~~r~ysi~s~~~~~~~l-~~~vk~~~~G~~s~~l~~~l~~Gd~i~i~gP~G~ 94 (96)
T 1qfj_A 27 AFSFRAGQYLMVVM-DERDKRPFSMASTPDEKGFI-ELHIGASEINLYAKAVMDRILKDHQIVVDIPHGE 94 (96)
T ss_dssp CCCCCTTCEEEEES-SSSCEEEEECCSCTTSTTCE-EEEEC------CCHHHHHHHHHHSEEEEEEEECS
T ss_pred CCCCCCCCEEEEEC-CCCCEEEEEEEECCCCCCEE-EEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCC
T ss_conf 88808996799995-99988999875079999889-9999954799831455863799999999436567
No 38
>>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} (A:39-159)
Probab=44.53 E-value=23 Score=16.47 Aligned_cols=63 Identities=13% Similarity=0.203 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998724899999999997517622---24304899988768799999999744442
Q gi|254780440|r 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS---ENAEYQAAKELQNLNEGRMAELENIITRA 73 (158)
Q Consensus 10 ~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~---ENaeY~aAke~q~~~~~ri~~L~~~L~~A 73 (158)
.-+..+..+++.|.. +|-.+.++|+..+..|+-. -..+....+.+...+..+|..|+..+...
T Consensus 39 ~~~r~~~~~~~~l~~-~~n~isk~i~~~~~~~~~~~~~~~~e~~~L~~~~~~lk~~i~~le~~~~~~ 104 (121)
T 1wle_A 39 QELRQLREQIRSLEE-EKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQL 104 (121)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999-999999999999856775100026899999999999999999999999999
No 39
>>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged active site, prolyl peptidase; 1.80A {Thermoplasma acidophilum} (A:136-185)
Probab=43.52 E-value=24 Score=16.37 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
Q ss_conf 9999999872489999999999751762224304899988
Q gi|254780440|r 16 QQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKEL 55 (158)
Q Consensus 16 ~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~ 55 (158)
.+|.+.|+..-=+++.+.|..+-+.||++ +.+|.+|-+.
T Consensus 3 ~~E~~RL~~~Lp~~~q~ai~~~E~~G~~~-~peY~aA~~~ 41 (50)
T 1mtz_A 3 VKEMNRLIDELPAKYRDAIKKYGSSGSYE-NPEYQEAVNY 41 (50)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHTCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHH
T ss_conf 45554312232677899988765412323-5679999998
No 40
>>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} (A:)
Probab=40.76 E-value=20 Score=16.80 Aligned_cols=49 Identities=18% Similarity=0.219 Sum_probs=35.1
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCE---ECCCCHHHH
Q ss_conf 0133211136579995347652359999631013345881---501317899
Q gi|254780440|r 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL---VSISSPIAR 128 (158)
Q Consensus 80 ~~~~~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~---IS~~SPlG~ 128 (158)
..+...+.+|++|.+...+....=++..+|+....+..+. |-++.|+|+
T Consensus 4 ~~~~~~~~vG~rV~v~~~~~~~~G~VryiG~v~~~~~~g~wvGVelD~p~Gk 55 (92)
T 1whm_A 4 GSSGPPLEINSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPIGN 55 (92)
T ss_dssp SCCSCSSCTTCEEEEEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSCCC
T ss_pred CCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCEEEEEEECCCCCC
T ss_conf 7668988308999996798853789999687798578864999995688877
No 41
>>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} (X:566-689)
Probab=39.52 E-value=28 Score=15.98 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=29.8
Q ss_pred EECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEE
Q ss_conf 15013178998728888878999828971999999
Q gi|254780440|r 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 (158)
Q Consensus 119 ~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il 153 (158)
-.-+.+|--.+-+|-+-||.|.+..+.|.....+.
T Consensus 41 ~~v~inp~dA~~~Gi~dGD~V~v~s~~G~~~~~v~ 75 (124)
T 2iv2_X 41 GYAQINTEDAKRLGIEDEALVWVHSRKGKIITRAQ 75 (124)
T ss_dssp CEEEEEHHHHHHHTCCTTCEEEEECSSCEEEEEEE
T ss_pred CEEEECHHHHHHCCCCCCCEEEEECCCEEEEEEEE
T ss_conf 67998999998759999699999889878999999
No 42
>>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} (A:)
Probab=39.12 E-value=28 Score=15.94 Aligned_cols=31 Identities=10% Similarity=0.184 Sum_probs=25.9
Q ss_pred HHHHCCCCCCCEEEEECCCCEEEEEEEEEEE
Q ss_conf 9987288888789998289719999999897
Q gi|254780440|r 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157 (158)
Q Consensus 127 G~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~y 157 (158)
=..|-..+.||.|.+.++++...|+|.++..
T Consensus 69 F~~l~~l~~gd~i~v~~~~~~~~Y~V~~~~~ 99 (145)
T 1t2w_A 69 FTNLKAAKKGSMVYFKVGNETRKYKMTSIRD 99 (145)
T ss_dssp TTTGGGCCTTCEEEEEETTEEEEEEEEEEEE
T ss_pred CCCHHHCCCCCEEEEECCCEEEEEEEEEEEE
T ss_conf 6875681666489996277799999999999
No 43
>>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} (A:1-155)
Probab=39.04 E-value=28 Score=15.93 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=41.3
Q ss_pred CCCCCEEEEEEC------CCCCEEEEEEECH-HHCCCCCCEECC---------------CCHHHHHHCCCCCCCEEEEEC
Q ss_conf 113657999534------7652359999631-013345881501---------------317899872888887899982
Q gi|254780440|r 86 IAFGATVSLVEK------NSGDKKNYQIVGD-QEADVQSGLVSI---------------SSPIARALIGKELGDIISVNA 143 (158)
Q Consensus 86 V~~Gs~V~l~d~------~~~~~~~~~lVg~-~e~d~~~~~IS~---------------~SPlG~ALlG~~~Gd~V~v~~ 143 (158)
...|-.|.+.-. .......|++.++ ...+...+.+.+ .-.+-.-|-+.++||+|.+.-
T Consensus 70 ~~~Gq~v~i~~~~~~~~~~~~~~R~yS~as~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~i~g 149 (155)
T 1fnb_A 70 YREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTG 149 (155)
T ss_dssp CCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHHHHHHHCCTTCEEEEEE
T ss_pred CCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCEECHHHHHCCCCCEEEEEE
T ss_conf 48986699995798977775861389867787355788778999999985455778779964005787199999899996
Q ss_pred CCCE
Q ss_conf 8971
Q gi|254780440|r 144 PGGE 147 (158)
Q Consensus 144 p~G~ 147 (158)
|-|.
T Consensus 150 P~G~ 153 (155)
T 1fnb_A 150 PVGK 153 (155)
T ss_dssp EECS
T ss_pred CCCC
T ss_conf 0589
No 44
>>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii} (A:)
Probab=38.05 E-value=29 Score=15.83 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=38.3
Q ss_pred EEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCC--CCCEEEEECCCCEEEEEEEEEE
Q ss_conf 9995347652359999631013345881501317899872888--8878999828971999999989
Q gi|254780440|r 92 VSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE--LGDIISVNAPGGEKTYEILQVL 156 (158)
Q Consensus 92 V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~--~Gd~V~v~~p~G~~~~~Il~I~ 156 (158)
|+++-.+-....+..|--+...... -.+..-|.+.|.|+- .||.|.+...++...|.|.+..
T Consensus 2 V~V~k~~~~~A~~V~LaP~~~~~~~---~~~~~~ik~~l~grPv~~GD~i~v~~~g~~i~F~Vv~T~ 65 (83)
T 2jv2_A 2 HHHHHMEGVIMSELKLKPLPKVELP---PDFVDVIRIKLQGKTVRTGDVIGISILGKEVKFKVVQAY 65 (83)
T ss_dssp ------CCCCCCEEEEEESSSCCCC---HHHHHHHHHHHTTSEECTTCEEEEEETTEEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEEEEEECCCEECC---CCHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEEEEEE
T ss_conf 6532057899878997006603048---888999999867987347999999853845889999963
No 45
>>2k48_A Nucleoprotein; viral protein; NMR {Andes virus} (A:)
Probab=38.00 E-value=29 Score=15.83 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1488999999999999987248999999999975----17622243048999887687999999997444421
Q gi|254780440|r 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARA----YGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74 (158)
Q Consensus 6 ~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~----~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~ 74 (158)
+.|=...+.|++|+...... ..-..+.+++|-. .-|---..-|++-+..-..++.+|.+|.+.|+.+.
T Consensus 31 ~~~Ms~leelQ~Eit~hE~Q-LviArQKLkDAeka~E~DPDdvNK~tl~~Rq~~VsaLq~KiaelKRqlAD~V 102 (107)
T 2k48_A 31 PFTMSTLQELQENITAHEQQ-LVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 11187899999999999999-9999999999999988390366489999999999999999999999999899
No 46
>>2ki8_A Tungsten formylmethanofuran dehydrogenase, subunit D (FWDD-2); beta-barrel, structural genomics, PSI-2, protein structure initiative; NMR {Archaeoglobus fulgidus} (A:1-133)
Probab=37.88 E-value=29 Score=15.82 Aligned_cols=35 Identities=17% Similarity=0.048 Sum_probs=29.8
Q ss_pred EECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEE
Q ss_conf 15013178998728888878999828971999999
Q gi|254780440|r 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 (158)
Q Consensus 119 ~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il 153 (158)
-.-+.+|--.+-+|-+.||.|.+..+.|.....+.
T Consensus 53 ~~v~inp~dA~~~Gi~dGd~V~i~s~~G~v~~~v~ 87 (133)
T 2ki8_A 53 NYAEINEEDWNALGLQEGDRVKVKTEFGEVVVFAK 87 (133)
T ss_dssp SEEEECHHHHHHHTCCTTCEEEEECSSCEEEEEEE
T ss_pred EEEEECHHHHHHCCCCCCCEEEEECCCEEEEEEEE
T ss_conf 49999999998859999999999879968999999
No 47
>>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae} (A:)
Probab=37.80 E-value=29 Score=15.81 Aligned_cols=35 Identities=17% Similarity=0.193 Sum_probs=28.8
Q ss_pred CHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEEEC
Q ss_conf 17899872888887899982897199999998979
Q gi|254780440|r 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 (158)
Q Consensus 124 SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~yi 158 (158)
+++=..|--.+.||.|.+...++...|+|.++..+
T Consensus 119 ~~~F~~L~~l~~Gd~i~i~~~~~~~~Y~V~~~~~v 153 (252)
T 2w1k_A 119 HVFFRHLDQLKVGDALYYDNGQEIVEYQMMDTEII 153 (252)
T ss_dssp CCTTTTGGGCCTTCEEEEECSSEEEEEEEEEEEEE
T ss_pred CCCCCCHHHCCCCCEEEEECCCEEEEEEEEEEEEE
T ss_conf 85537755754699899982994999999579998
No 48
>>1tmo_A TMAO reductase, trimethylamine N-oxide reductase; oxidoreductase, oxotransferase, molybdoenzyme, MO-cofactor, molybdenum; HET: 2MD; 2.50A {Shewanella massilia} (A:652-757,A:802-817)
Probab=36.17 E-value=31 Score=15.64 Aligned_cols=35 Identities=23% Similarity=0.202 Sum_probs=30.0
Q ss_pred EECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEE
Q ss_conf 15013178998728888878999828971999999
Q gi|254780440|r 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 (158)
Q Consensus 119 ~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il 153 (158)
-+-..+|--.+-+|-+-||.|.+..+.|.....+.
T Consensus 56 ~~v~inp~dA~~lGI~dGD~V~V~s~~G~i~~~a~ 90 (122)
T 1tmo_A 56 EPVYISPVDAKARGIKDGDIVRVFNDRGQLLAGAV 90 (122)
T ss_dssp CEEEECHHHHHHTTCCTTCEEEEECSSCEEEEEEE
T ss_pred CEEEECHHHHHHCCCCCCCEEEEECCCEEEEEEEE
T ss_conf 87998999999769999999999869879999999
No 49
>>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition domain; NMR {Thermoplasma acidophilum} (A:)
Probab=35.44 E-value=32 Score=15.57 Aligned_cols=69 Identities=19% Similarity=0.137 Sum_probs=26.8
Q ss_pred CCCCCEEEEEECCCCCEEEEEEECHHHCCCCC--CEECCCCHHHHHHCCCC--CCCEEEEECCC----CEEEEEEEEE
Q ss_conf 11365799953476523599996310133458--81501317899872888--88789998289----7199999998
Q gi|254780440|r 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSISSPIARALIGKE--LGDIISVNAPG----GEKTYEILQV 155 (158)
Q Consensus 86 V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~--~~IS~~SPlG~ALlG~~--~Gd~V~v~~p~----G~~~~~Il~I 155 (158)
+..|..|++.-.+-..-...+|. |...+... ..-.+..=|.+.|.|+- .||++.+...+ ....|+|+++
T Consensus 79 v~~gd~V~V~~~~~~~a~~v~l~-P~~~~~~~i~~~~~~~~~l~~~L~~~~vt~Gd~i~i~~~~~~~~~~i~~~V~~~ 155 (185)
T 1cz4_A 79 ASIGDKVKVRKVRTEIAKKVTLA-PIIRKDQRLKFGEGIEEYVQRALIRRPMLEQDNISVPGLTLAGQTGLLFKVVKT 155 (185)
T ss_dssp CCTTCEEEEEEECCCBCSEEEEE-EECSTTCCSCCCSSHHHHHHHHHTTCEECTTCEECCSSCCCSSCCCCEEEEEEE
T ss_pred CCCCCEEEEEECCCCCCCEEEEE-CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEEEEEE
T ss_conf 66998799987788766589995-354445523355117999999876997638998997012567885178999998
No 50
>>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} (A:)
Probab=34.85 E-value=23 Score=16.52 Aligned_cols=28 Identities=7% Similarity=0.067 Sum_probs=23.3
Q ss_pred CEECCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf 8150131789987288888789998289
Q gi|254780440|r 118 GLVSISSPIARALIGKELGDIISVNAPG 145 (158)
Q Consensus 118 ~~IS~~SPlG~ALlG~~~Gd~V~v~~p~ 145 (158)
|.-.+...+..+|.|.++|+.+.+.+|.
T Consensus 65 g~~~~i~G~~~~l~~M~~Ge~~~~~ipp 92 (135)
T 1r9h_A 65 GRGNVIKGWDLGVATMTKGEVAEFTIRS 92 (135)
T ss_dssp TTTSSCHHHHHHHTTCCBTCEEEEEECG
T ss_pred CCCCCCHHHHHHHHCCCCCCCEEEEECH
T ss_conf 0664007899987428789505999899
No 51
>>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_3* 3iam_3* 3ias_3* (3:680-783)
Probab=34.42 E-value=33 Score=15.47 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=30.6
Q ss_pred CEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEE
Q ss_conf 815013178998728888878999828971999999
Q gi|254780440|r 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 (158)
Q Consensus 118 ~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il 153 (158)
.-.-+.+|--.+-+|-+.||.|.+..|.|...+.+.
T Consensus 34 ~~~v~in~~dA~~lGi~dgd~V~v~s~~G~i~~~~~ 69 (104)
T 3i9v_3 34 RAELWAHPETARAEALPEGAQVAVETPFGRVEARVV 69 (104)
T ss_dssp CCEEEECHHHHHHTTCCTTCEEEEEETTEEEEEEEE
T ss_pred CCEEEECHHHHHHCCCCCCCEEEEECCCEEEEEEEE
T ss_conf 987998999998769999899999869889999999
No 52
>>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, periplasm, metal-binding, metal transport, copper tolerance, copper transport; 1.70A {Escherichia coli} PDB: 2vb3_X (X:)
Probab=34.24 E-value=23 Score=16.51 Aligned_cols=43 Identities=7% Similarity=0.002 Sum_probs=29.0
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEE
Q ss_conf 3458815013178998728888878999828971999999989
Q gi|254780440|r 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 (158)
Q Consensus 114 d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~ 156 (158)
+-......+.-.=+.-|-+.++||.|.+.+-...-.|.|.+|+
T Consensus 43 ~wpaMTM~F~v~~~~~l~~~~~Gd~V~F~~~~~~~~~~I~~i~ 85 (88)
T 2vb2_X 43 NWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIK 85 (88)
T ss_dssp TBCSEEEEEECCTTCEECCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEECCCHHHHHCCCCCCEEEEEEEEECCEEEEEEEE
T ss_conf 9976388878589778734999999999999809949999999
No 53
>>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus pneumoniae} PDB: 3g69_A* (A:)
Probab=33.85 E-value=34 Score=15.41 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=26.2
Q ss_pred HHHCCCCCCCEEEEECCCCEEEEEEEEEEEC
Q ss_conf 9872888887899982897199999998979
Q gi|254780440|r 128 RALIGKELGDIISVNAPGGEKTYEILQVLWI 158 (158)
Q Consensus 128 ~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~yi 158 (158)
..|-..+.||.|.+...++...|+|.++..+
T Consensus 124 ~~L~~l~~Gd~i~v~~~~~~y~Y~V~~~~~v 154 (212)
T 3g66_A 124 SQLDKMKKGDIFYLHVLDQVLAYQVDQIVTV 154 (212)
T ss_dssp TTGGGCCTTCEEEEEETTEEEEEEEEEEEEE
T ss_pred HHHHHCCCCCEEEEEECCEEEEEEEEEEEEE
T ss_conf 6587575899899995992899999999999
No 54
>>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} (A:71-124)
Probab=33.53 E-value=22 Score=16.59 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=16.1
Q ss_pred CCCCCEEEEECCCCEEEEEEEEE
Q ss_conf 88887899982897199999998
Q gi|254780440|r 133 KELGDIISVNAPGGEKTYEILQV 155 (158)
Q Consensus 133 ~~~Gd~V~v~~p~G~~~~~Il~I 155 (158)
-++|..+....|+|...++|.+|
T Consensus 20 levG~~~~~~~~~G~~~~~V~~v 42 (54)
T 2kfw_A 20 LQVGMRFLAETDQGPVPVEITAV 42 (54)
T ss_dssp CCTTCEEEEEETTEEEEEEBCCC
T ss_pred CCCCCEEEEECCCCCEEEEEEEE
T ss_conf 67750898725788478999998
No 55
>>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} (A:1-136)
Probab=32.61 E-value=35 Score=15.28 Aligned_cols=61 Identities=15% Similarity=0.032 Sum_probs=37.0
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf 1113657999534765235999963101334588150131789987288888789998289
Q gi|254780440|r 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 (158)
Q Consensus 85 ~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~ 145 (158)
....|++|++.....-.-..|.=-.........+.-.+.-.+..+|.|.++|+...+.+|.
T Consensus 40 ~p~~gd~V~v~y~~~l~g~~~~~~~~~~~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~ 100 (136)
T 1p5q_A 40 KPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLERAIQRXEKGEHSIVYLKP 100 (136)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECT
T ss_pred CCCCCCEEEEEEEEEECCCCEECCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECH
T ss_conf 9898998999999998990345686258961677667318999999837878889999674
No 56
>>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A (A:1-113)
Probab=32.07 E-value=36 Score=15.22 Aligned_cols=58 Identities=21% Similarity=0.234 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999872489999999999751762224304899988768799999999744442
Q gi|254780440|r 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 (158)
Q Consensus 10 ~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A 73 (158)
.-+..+..+++.+.. +|-.+.+.|+.+...|+- ....+++-..+..++..|+..+..+
T Consensus 38 ~~~r~~~~~~~~l~~-~rn~lsk~i~~~~~~~~e-----~~~l~~e~~~lk~~l~~le~~~~~~ 95 (113)
T 2dq0_A 38 TEWRTKLKEINRLRH-ERNKIAVEIGKRRKKGEP-----VDELLAKSREIVKRIGELENEVEEL 95 (113)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHTSCCC-----THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999-999999999999867997-----8999999999999999999999999
No 57
>>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} (A:)
Probab=31.74 E-value=29 Score=15.81 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=32.3
Q ss_pred CCCCCCEEEEEEC---CCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECC
Q ss_conf 1113657999534---76523599996310133458815013178998728888878999828
Q gi|254780440|r 85 RIAFGATVSLVEK---NSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144 (158)
Q Consensus 85 ~V~~Gs~V~l~d~---~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p 144 (158)
.+..|++|++... .+|....- ........+.-.....+..+|.|.++|+...+.+|
T Consensus 33 ~~~~gd~V~v~y~~~l~dg~~~~~----s~~~~~~~g~~~~i~g~~~~l~~M~~Ge~~~~~ip 91 (135)
T 2d9f_A 33 RPVKGQVVTVHLQTSLENGTRVQE----EPELVFTLGDCDVIQALDLSVPLMDVGETAMVTAD 91 (135)
T ss_dssp CCCTTSEEEEEEEEEESSSCEEEE----EEEEEEETTSCCSCTTTTTTGGGSCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEEEEECCCCEECC----CCCCEEECCCCCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 899989999999999777989015----68832771587521477532455138973999999
No 58
>>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} (A:1-108)
Probab=31.65 E-value=30 Score=15.76 Aligned_cols=65 Identities=20% Similarity=0.296 Sum_probs=43.2
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEECHH-HCCCCCCEECCC--C-HHHHHHC-CCCCCCEEEEECCCCEEE
Q ss_conf 2111365799953476523599996310-133458815013--1-7899872-888887899982897199
Q gi|254780440|r 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGLVSIS--S-PIARALI-GKELGDIISVNAPGGEKT 149 (158)
Q Consensus 84 ~~V~~Gs~V~l~d~~~~~~~~~~lVg~~-e~d~~~~~IS~~--S-PlG~ALl-G~~~Gd~V~v~~p~G~~~ 149 (158)
-....|..|.|.- ..+....|++.... +.+...=.|-.. + ..-..|+ -.++||.|.+.-|-|...
T Consensus 37 ~~~~pGq~v~l~~-~~~~~r~ysi~s~~~~~~~l~l~Vk~~~~g~~~S~~l~~~l~~Gd~i~i~gP~G~f~ 106 (108)
T 2pia_A 37 PPFEAGANLTVAV-PNGSRRTYSLCNDSQERNRYVIAVKRDSNGRGGSISFIDDTSEGDAVEVSLPRNEFP 106 (108)
T ss_dssp CCCCTTCEEEEEC-TTSCEEEEECCSCTTCCSEEEEEEECCTTSCSHHHHHHHSCCTTCEEEECCCBCCSC
T ss_pred CCCCCCCEEEEEE-CCCCEEEEEECCCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCCEEEEECCCCCCC
T ss_conf 8889996599995-899889986177899999899999984588730699985455998678840356762
No 59
>>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metalloprotein, metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X (X:)
Probab=31.44 E-value=27 Score=16.03 Aligned_cols=43 Identities=7% Similarity=0.002 Sum_probs=28.8
Q ss_pred CCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEE
Q ss_conf 3458815013178998728888878999828971999999989
Q gi|254780440|r 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156 (158)
Q Consensus 114 d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~ 156 (158)
+-......+.-+=..-|-|.++||.|.+.+-...-.|.|.+|+
T Consensus 35 ~wpaMTM~F~v~~~~~l~~l~~Gd~V~F~~~~~~~~~~i~~i~ 77 (80)
T 2qcp_X 35 NWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSLLQDIK 77 (80)
T ss_dssp TBCSEEEEEECCTTCEECCCCTTCEEEEEEEEETTEEEEEEEE
T ss_pred CCCCEEEEEECCCHHHHHCCCCCCEEEEEEEEECCEEEEEEEE
T ss_conf 9985388978589779735999999999999949969999999
No 60
>>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix- flanked five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Ralstonia eutropha} (A:151-260)
Probab=30.47 E-value=38 Score=15.06 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=37.0
Q ss_pred CCCCCCEEEEEECCCCCE---EEEEEECHHHCCCCCCEECC-----------CCHHHHHHC-CCCCCCEEEEECCCCE
Q ss_conf 111365799953476523---59999631013345881501-----------317899872-8888878999828971
Q gi|254780440|r 85 RIAFGATVSLVEKNSGDK---KNYQIVGDQEADVQSGLVSI-----------SSPIARALI-GKELGDIISVNAPGGE 147 (158)
Q Consensus 85 ~V~~Gs~V~l~d~~~~~~---~~~~lVg~~e~d~~~~~IS~-----------~SPlG~ALl-G~~~Gd~V~v~~p~G~ 147 (158)
....|..|.|.....+.. ..|+.+. +++..+.+.+ .-++...|. ..++||+|.+.-|.|.
T Consensus 34 ~~~pGQ~v~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Vk~~~~~~~~~G~~S~~l~~~l~~Gd~v~i~gP~G~ 108 (110)
T 1cqx_A 34 NFEPGQYTSVAIDVPALGLQQIRQYSLS---DMPNGRTYRISVKREGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYGS 108 (110)
T ss_dssp CCCTTCEEEEEEEETTTTEEEEEEEECC---SCCCSSCEEEEEECCCBTTBCCCHHHHHHHHHCCTTCEEEECCCBCS
T ss_pred CCCCCCEEEEEECCCCCCCEEECCCCEE---ECCCCCCEEEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 9799974899961179885044144120---28999948999998268778996076999851877768998504443
No 61
>>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus} (A:583-727)
Probab=29.21 E-value=40 Score=14.92 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=24.0
Q ss_pred ECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEE
Q ss_conf 501317899872888887899982897199999
Q gi|254780440|r 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 (158)
Q Consensus 120 IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~I 152 (158)
.=+.+|--.+=+|-+.||.|.+..+.|.....+
T Consensus 44 ~v~inp~dA~~lGi~~Gd~V~v~s~~G~~~~~a 76 (145)
T 2e7z_A 44 VALLHPKTAQSLGLPSGEWIWVETTHGRLKLLL 76 (145)
T ss_dssp EEEECHHHHHHHTCCTTSEEEEECSSCEEEEEE
T ss_pred EEEECHHHHHHCCCCCCCEEEEECCCEEEEEEE
T ss_conf 699899999876999999999984998999999
No 62
>>1jb9_A Ferredoxin-NADP reductase; electron transport, oxidoreductase; HET: FAD; 1.70A {Zea mays} (A:1-158)
Probab=29.13 E-value=40 Score=14.91 Aligned_cols=61 Identities=18% Similarity=0.261 Sum_probs=38.2
Q ss_pred CCCCEEEEEEC--------CCCCEEEEEEEC-HHHCCCCCCEECCC----------------CHHHHH---HCCCCCCCE
Q ss_conf 13657999534--------765235999963-10133458815013----------------178998---728888878
Q gi|254780440|r 87 AFGATVSLVEK--------NSGDKKNYQIVG-DQEADVQSGLVSIS----------------SPIARA---LIGKELGDI 138 (158)
Q Consensus 87 ~~Gs~V~l~d~--------~~~~~~~~~lVg-~~e~d~~~~~IS~~----------------SPlG~A---LlG~~~Gd~ 138 (158)
..|-.|.+.-. .....+.|+|.. |...+...+.|++. .|-|.+ |-..++||.
T Consensus 67 ~~Gq~~~i~~~~~~~~~~~~~~~~R~YSias~P~~~~~~~~~i~l~Vk~~~~~~~~~~~~~~~~~G~~S~~L~~l~~Gd~ 146 (158)
T 1jb9_A 67 WEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDK 146 (158)
T ss_dssp CTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCBCTTTCCBCGGGSCHHHHHHHTCCTTCE
T ss_pred CCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEHHHHHCCCCCCE
T ss_conf 58988899837864101588898605784778767899765899999997403566677888838617467754999998
Q ss_pred EEEECCCCE
Q ss_conf 999828971
Q gi|254780440|r 139 ISVNAPGGE 147 (158)
Q Consensus 139 V~v~~p~G~ 147 (158)
|.+.-|-|.
T Consensus 147 v~v~gP~G~ 155 (158)
T 1jb9_A 147 IQLTGPSGK 155 (158)
T ss_dssp EEEEEEECS
T ss_pred EEEECCCCC
T ss_conf 889467687
No 63
>>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} (A:)
Probab=28.79 E-value=41 Score=14.87 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=33.1
Q ss_pred CCCCCCEEEEEECC---CCCEEEEEEECHHH----CCCCCCEECCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf 11136579995347---65235999963101----334588150131789987288888789998289
Q gi|254780440|r 85 RIAFGATVSLVEKN---SGDKKNYQIVGDQE----ADVQSGLVSISSPIARALIGKELGDIISVNAPG 145 (158)
Q Consensus 85 ~V~~Gs~V~l~d~~---~~~~~~~~lVg~~e----~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~ 145 (158)
.+.-|..|++.... +|+... +... .....+.-.+..-+..+|.|.++|+.+.+.+|.
T Consensus 66 ~~~~gd~v~~~y~~~~~~G~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~l~~m~~Ge~~~~~v~~ 129 (280)
T 1q1c_A 66 MPMIGDRVFVHYTGWLLDGTKFD----SSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKP 129 (280)
T ss_dssp CCCTTCEEEEEEEEEETTSCEEE----ESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred CCCCCCEEEEEEEEEECCCCEEE----ECCCCCCCEEEECCCCCEEEEHHHHHCCCCCCCEEEEEECH
T ss_conf 79899999999999979999999----78878989799768888542377510894079889999997
No 64
>>2nya_A Periplasmic nitrate reductase; molybdenum, oxidoreductase; HET: MGD; 2.50A {Escherichia coli K12} (A:671-792)
Probab=28.36 E-value=42 Score=14.83 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=28.9
Q ss_pred EECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEE
Q ss_conf 1501317899872888887899982897199999
Q gi|254780440|r 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 (158)
Q Consensus 119 ~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~I 152 (158)
-.-+.+|--.+=+|-+-||.|.+..+.|.....+
T Consensus 38 ~~v~inp~dA~~lGi~dGd~V~v~s~~G~~~~~a 71 (122)
T 2nya_A 38 AVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIV 71 (122)
T ss_dssp CEEECCHHHHHTTTCCTTCEEEEEETTEEEEEEE
T ss_pred CEEEECHHHHHHCCCCCCCEEEEECCCEEEEEEE
T ss_conf 8899899999875999989999986986899999
No 65
>>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} (A:)
Probab=28.14 E-value=42 Score=14.80 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=35.7
Q ss_pred CCCCCCCEEEEEECCC---CCEEEEEEECHHHCCCCC---CEECCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf 2111365799953476---523599996310133458---8150131789987288888789998289
Q gi|254780440|r 84 DRIAFGATVSLVEKNS---GDKKNYQIVGDQEADVQS---GLVSISSPIARALIGKELGDIISVNAPG 145 (158)
Q Consensus 84 ~~V~~Gs~V~l~d~~~---~~~~~~~lVg~~e~d~~~---~~IS~~SPlG~ALlG~~~Gd~V~v~~p~ 145 (158)
..+..|++|++...-. |.... -......|.. +.-.+..-+-.+|.|-++|+.+.+.+|.
T Consensus 14 ~~~~~~d~V~v~y~~~~~dg~~~~---~t~~~~~p~~~~~g~~~~~~Gl~~~l~~M~~Ge~~~~~ip~ 78 (107)
T 2ppn_A 14 TFPKRGQTCVVHYTGMLEDGKKFD---SSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISP 78 (107)
T ss_dssp CCCCTTCEEEEEEEEEETTSCEEE---EHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred CCCCCCCEEEEEEEEEECCCCEEE---EEECCCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEECH
T ss_conf 579999999999999812880998---62001103237616623001334552566579878999998
No 66
>>2gp4_A 6-phosphogluconate dehydratase; N-terminal domain largely alpha-helical, C-terminal domain mainly beta-sheet (trefoil-like); 2.49A {Shewanella oneidensis mr-1} (A:439-577)
Probab=26.50 E-value=36 Score=15.20 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=31.8
Q ss_pred CCCCEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEE
Q ss_conf 45881501317899872888887899982897199999
Q gi|254780440|r 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152 (158)
Q Consensus 115 ~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~I 152 (158)
|.-+++|..+-.|-.|-=-+-||.+++.++.++..+.|
T Consensus 102 ~~vgHvsPEAa~GGpialv~dGD~I~iD~~~r~l~l~V 139 (139)
T 2gp4_A 102 PAAIHLTPEAIDGGLIAKVQDGDLIRVDALTGELSLLV 139 (139)
T ss_dssp CEEEEEESCGGGTCGGGTCCTTCEEEEETTTTEEEECS
T ss_pred CEEEEECCCCCCCCCEEEEECCCEEEEECCCCEEEEEE
T ss_conf 74899782211699669940799999977899898972
No 67
>>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} (A:1-35,A:106-185)
Probab=26.02 E-value=46 Score=14.56 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=50.3
Q ss_pred CCCCCHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4314889999999999999--------872489999999999751762224304899988768799999999744442
Q gi|254780440|r 4 KIPVTSKGFDKIQQELRWR--------QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73 (158)
Q Consensus 4 k~~lT~~g~~~L~~El~~l--------~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A 73 (158)
.+|+|++-.+.|-..+..+ ++ -|.+....|+.....+++||+-...+-++=|..-+.-|..++..++..
T Consensus 33 ~~~lTeErRkeLvK~aKk~~EeaKvsIRn-IRrda~~~iKk~kK~~~iSEDd~k~~ekeIQkLTDkyi~kID~l~k~K 109 (115)
T 1eh1_A 33 ANPLTEERRKDLVRAVRQYAEEGRVAIRN-IRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKK 109 (115)
T ss_dssp CCSCCTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99799999999999999999999999999-999999998600145899867899999999999999999999999999
No 68
>>1q16_A Respiratory nitrate reductase 1 alpha chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} (A:1071-1228)
Probab=25.82 E-value=46 Score=14.54 Aligned_cols=34 Identities=24% Similarity=0.119 Sum_probs=27.2
Q ss_pred ECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEE
Q ss_conf 5013178998728888878999828971999999
Q gi|254780440|r 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 (158)
Q Consensus 120 IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il 153 (158)
.-+.+|--.+=+|-+-||.|.+..+.|....++.
T Consensus 47 ~v~inp~dA~~lGI~dGD~V~v~s~~G~~~~~a~ 80 (158)
T 1q16_A 47 VVWLSEADAKDLGIADNDWIEVFNSNGALTARAV 80 (158)
T ss_dssp EEEEEHHHHHHHTCCTTCEEEEEETTEEEEEEEE
T ss_pred EEEECHHHHHHCCCCCCCEEEEECCCEEEEEEEE
T ss_conf 7998999998749998999999848979999999
No 69
>>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} (A:1-54)
Probab=24.66 E-value=49 Score=14.40 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999987248999999999975176
Q gi|254780440|r 16 QQELRWRQQEERPRIIKAISEARAYGD 42 (158)
Q Consensus 16 ~~El~~l~~~~r~~~~~~i~~A~~~GD 42 (158)
++|+......-|+.+.+-|+.|++.|=
T Consensus 24 Q~eIA~~lgiSR~~VsRlL~~Ar~~Gi 50 (54)
T 2w48_A 24 QAQIARELGIYRTTISRLLKRGREQGI 50 (54)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCE
T ss_conf 999999869899999999999997690
No 70
>>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain protein, rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A (A:65-120)
Probab=24.48 E-value=49 Score=14.38 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=11.4
Q ss_pred CCCCCCEEEEEECCCCCEEEEEEE
Q ss_conf 111365799953476523599996
Q gi|254780440|r 85 RIAFGATVSLVEKNSGDKKNYQIV 108 (158)
Q Consensus 85 ~V~~Gs~V~l~d~~~~~~~~~~lV 108 (158)
.+..|..+.+.+ +.|....++++
T Consensus 20 ~le~G~~l~~~~-~~G~~~~~~V~ 42 (56)
T 3cgm_A 20 EVVPGAQFYAQD-MEGNPMPLTVV 42 (56)
T ss_dssp CCCTTCEEEEEE-TTTEEEEEEEE
T ss_pred CCCCCCEEEECC-CCCCEEEEEEE
T ss_conf 432263355106-77862789999
No 71
>>3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, plasmid, secreted, virulence, structural genomics; 2.70A {Shigella flexneri} (A:)
Probab=23.49 E-value=51 Score=14.26 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCE--EEEEE
Q ss_conf 224304899988768799999999744442104721013321113657--99953
Q gi|254780440|r 44 SENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGAT--VSLVE 96 (158)
Q Consensus 44 ~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~~~~~~~V~~Gs~--V~l~d 96 (158)
+||..|-+. .+...-.=|..|+.+|..+-|. |+..|.+-|..+.| +.++|
T Consensus 140 ~~ds~Ysa~--~l~k~r~fi~~lE~~L~~aGi~-pg~~P~SDV~p~~W~yaSYRN 191 (218)
T 3i0u_A 140 QECSQYSAL--LLHKIRQFIMCLESNLLRSKIA-PGEYPASDVRPEDWKYVSYRN 191 (218)
T ss_dssp SSTTCCCHH--HHHHHHHHHHHHHHHHHHTTCC-BCCCCTTCBCCTTCSSEEEEE
T ss_pred CCCCCCCHH--HHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCEEEEHH
T ss_conf 556645699--9987899999999999972678-898985446845452123100
No 72
>>1ti6_A Pyrogallol hydroxytransferase large subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} (A:717-875)
Probab=22.68 E-value=53 Score=14.16 Aligned_cols=34 Identities=18% Similarity=0.183 Sum_probs=28.3
Q ss_pred ECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEE
Q ss_conf 5013178998728888878999828971999999
Q gi|254780440|r 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153 (158)
Q Consensus 120 IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il 153 (158)
.-+.+|--.+=+|-+-||.|.+..+.|....++.
T Consensus 55 ~v~inp~dA~~lGI~dGD~V~v~s~~G~~~~~a~ 88 (159)
T 1ti6_A 55 IMRVNSIDAEARGIKNGDLIRAYNDRGSVILAAQ 88 (159)
T ss_dssp EEEEEHHHHHHTTCCTTCEEEEEETTEEEEEEEE
T ss_pred EEEECHHHHHHCCCCCCCEEEEECCCEEEEEEEE
T ss_conf 5898999998769998999999848969999999
No 73
>>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} (A:1-120)
Probab=22.24 E-value=54 Score=14.11 Aligned_cols=62 Identities=15% Similarity=0.331 Sum_probs=38.4
Q ss_pred CCCCCCCEEEEEECCCCC--EEEEEEECHHHC-CCCCCEE-----------CCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf 211136579995347652--359999631013-3458815-----------0131789987288888789998289
Q gi|254780440|r 84 DRIAFGATVSLVEKNSGD--KKNYQIVGDQEA-DVQSGLV-----------SISSPIARALIGKELGDIISVNAPG 145 (158)
Q Consensus 84 ~~V~~Gs~V~l~d~~~~~--~~~~~lVg~~e~-d~~~~~I-----------S~~SPlG~ALlG~~~Gd~V~v~~p~ 145 (158)
.....|..|.|.....++ ...|+++.+... +...-.| -..-++...|...++||.|.+.-|+
T Consensus 45 ~~~~~Gq~v~i~~~~~~~~~~R~ys~~s~~~~~~~~~~~Vk~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~ 120 (120)
T 1umk_A 45 LGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPS 120 (120)
T ss_dssp CCCCTTCEEEEEEEETTEEEEEEECCSSCTTCCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTCEEEEEEEE
T ss_pred CCCCCCCEEEEEECCCCCEEECCCEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCC
T ss_conf 6878861699752579907664630561588898089998864047653147997178999728999989995571
No 74
>>2ke0_A Peptidyl-prolyl CIS-trans isomerase; bupsa.00130.A, FK506 binding protein FKBP, structural genomics; NMR {Burkholderia pseudomallei} (A:)
Probab=21.96 E-value=55 Score=14.07 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=21.8
Q ss_pred CCCCHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 01317899872888887899982897
Q gi|254780440|r 121 SISSPIARALIGKELGDIISVNAPGG 146 (158)
Q Consensus 121 S~~SPlG~ALlG~~~Gd~V~v~~p~G 146 (158)
....-+..+|.+-++|+.+.+.+|..
T Consensus 65 ~~i~G~~~~l~~M~~Ge~~~~~ip~~ 90 (117)
T 2ke0_A 65 MVIKGWDEGVQGMKVGGVRRLTIPPQ 90 (117)
T ss_dssp SSCHHHHHHHTTCBTTCEEEEEECTT
T ss_pred CCCCHHHHHHCCCCCCCEEEEEECCH
T ss_conf 64722657746676899999998909
No 75
>>2kc5_A Hydrogenase-2 operon protein HYBE; chaperone; NMR {Escherichia coli k-12} (A:)
Probab=21.95 E-value=55 Score=14.07 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=30.1
Q ss_pred EEEECHHHCCCCCCEECCCCHHHHH-HCCCCCCCEEEEECCCCEEEEEEEEE
Q ss_conf 9996310133458815013178998-72888887899982897199999998
Q gi|254780440|r 105 YQIVGDQEADVQSGLVSISSPIARA-LIGKELGDIISVNAPGGEKTYEILQV 155 (158)
Q Consensus 105 ~~lVg~~e~d~~~~~IS~~SPlG~A-LlG~~~Gd~V~v~~p~G~~~~~Il~I 155 (158)
=.+|.||=.|.- .=|.... .-++.+|+.+.+.+|.|...|++-..
T Consensus 54 GvliTPWfmnlv------~lPg~~~~w~~~~~G~k~~~~lP~G~~~F~~~~~ 99 (162)
T 2kc5_A 54 GCVITPWMLSAV------IFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGEL 99 (162)
T ss_dssp EEEECSSCEEEE------EEECSSCEEECCCTTCEEEECCTTCCEEEEEEEE
T ss_pred EEEHHHHHHHHH------HCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECC
T ss_conf 876317788754------2579866766678875357864762189886147
No 76
>>3enu_A Nitrollin, putative uncharacterized protein; betagamma crystallin, structural protein; 1.86A {Nitrosospira multiformis} PDB: 3ent_A (A:)
Probab=21.09 E-value=57 Score=13.96 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=27.2
Q ss_pred CCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHH
Q ss_conf 21113657999534765235999963101334588150131789987
Q gi|254780440|r 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130 (158)
Q Consensus 84 ~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~AL 130 (158)
..-.-|+||.+.+..+=+-...+|+||.+.- |..-|.|+.+
T Consensus 17 ~~~~~GCW~~F~~~rNFQGD~L~L~GPA~~~------~l~~~~~~~~ 57 (114)
T 3enu_A 17 ELENRGCWVKFFDKKNFQGDSLFLSGPATLP------RLIGPFGYDW 57 (114)
T ss_dssp HHHHHCCEEEEESSGGGCSCEEEEESSEEES------SSEETTTEEC
T ss_pred HHHHCCCEEEEECCCCCCCCEEEEECCHHHH------HCCCCHHHHH
T ss_conf 5660872577631676567468987746632------2026024565
No 77
>>3ff6_A Acetyl-COA carboxylase 2; ACC2, ACC, metabolic disorder, fatty acid metabolism, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis; HET: RCP; 3.19A {Homo sapiens} (A:149-210)
Probab=20.96 E-value=57 Score=13.94 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=36.9
Q ss_pred EEEECHHHCCCCCC-EECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEE
Q ss_conf 99963101334588-1501317899872888887899982897199999998
Q gi|254780440|r 105 YQIVGDQEADVQSG-LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155 (158)
Q Consensus 105 ~~lVg~~e~d~~~~-~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I 155 (158)
|++--.++++|.+| +.-+++|=...-++++.-=..+--.-+|..+|.|..|
T Consensus 6 F~VaW~d~~~P~kGFkYLYLt~edy~~l~~~~sv~~e~i~~~GE~R~~I~~I 57 (62)
T 3ff6_A 6 FHVAWVDPEDPHKGFKYLYLTPQDYTRISSLNSVHCKHIEEGGESRYMITDI 57 (62)
T ss_dssp CEEEESCTTCTTSCEEEEEECHHHHHHHHTTTCEEEEEECGGGCCEEEEEEE
T ss_pred CCCCCCCCCCCCCCCEEEECCHHHHHHHHCCCCCEEEEECCCCCCCEEECCC
T ss_conf 2213357777445621430378888764204640122101477542000133
No 78
>>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} (A:1-82,A:135-151)
Probab=20.60 E-value=51 Score=14.26 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.1
Q ss_pred CCCCHHHHHHCCCCCCCEEEEECCC
Q ss_conf 0131789987288888789998289
Q gi|254780440|r 121 SISSPIARALIGKELGDIISVNAPG 145 (158)
Q Consensus 121 S~~SPlG~ALlG~~~Gd~V~v~~p~ 145 (158)
.+..-+-.||.|.++|+...+.+|-
T Consensus 53 ~vI~G~eeaL~gM~~Ge~~~v~Vpp 77 (99)
T 1ix5_A 53 QLIQGFEEAVLDMEVGDEKTVKIPA 77 (99)
T ss_dssp CSCHHHHHHHHTCCTTCCCEEEECT
T ss_pred CCCHHHHHHHCCCCCCCEEEEEECH
T ss_conf 7026799872675799679997598
Done!