HHsearch results for GI: 254780440 and protein with PDBid: 1grj_A
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=100.00 E-value=0 Score=331.89 Aligned_cols=157 Identities=45% Similarity=0.815 Sum_probs=153.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98431488999999999999987248999999999975176222430489998876879999999974444210472101
Q gi|254780440|r 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81 (158)
Q Consensus 2 ~~k~~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~~~ 81 (158)
|+++|||++||++|++||++|++++||++++.+++|+++|||||||+|++||++|+++++||++|+.+|++|+|++++..
T Consensus 1 m~~i~lT~~g~~~L~~EL~~L~~~~r~e~~~~i~~A~~~GDl~Enaey~aAk~~~~~~e~ri~~l~~~l~~a~ivd~~~~ 80 (158)
T 1grj_A 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKM 80 (158)
T ss_dssp -CCEEEEHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECGGGS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCC
T ss_conf 98527799999999999999986301778988999886578222646899999999999999999976413499757668
Q ss_pred CC-CCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEEEC
Q ss_conf 33-211136579995347652359999631013345881501317899872888887899982897199999998979
Q gi|254780440|r 82 SG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 (158)
Q Consensus 82 ~~-~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~yi 158 (158)
+. ++|.|||+|++.|.+++++.+|+||||+|+||+.++||+.||||+||||+++||+|+|.+|+|...|+|++|+||
T Consensus 81 ~~~~~V~~Gs~V~l~d~~~~~~~~~~ivg~~ead~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~I~~I~y~ 158 (158)
T 1grj_A 81 PNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158 (158)
T ss_dssp CCCSBCCTTCEEEEEETTTTEEEEEEEECTTTCBGGGTEEESSSHHHHHHTTCBTTCEECC------CCEEEEEEECC
T ss_pred CCCCEEEEEEEEEEEECCCCEEEEEEEECCHHHHCCCCEECCCCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEC
T ss_conf 999979951399999868854899998680553176883347787899983898999899983997489999999989