HHsearch results for GI: 254780440 and protein with PDBid: 2p4v_A
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=100.00 E-value=0 Score=323.53 Aligned_cols=156 Identities=33% Similarity=0.542 Sum_probs=152.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 98431488999999999999987248999999999975176222430489998876879999999974444210472101
Q gi|254780440|r 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81 (158)
Q Consensus 2 ~~k~~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~~~ 81 (158)
|.++|||++||++|++||++|++++||+++++|++|+++|||+|||+|++||++|+++++||++|+.+|++|+|++++..
T Consensus 1 M~~~~lT~~g~~~L~~eL~~L~~~~r~~~~~~i~~A~~~gDl~ENaey~~ake~q~~~~~ri~~L~~~L~~a~ii~~~~~ 80 (158)
T 2p4v_A 1 MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQ 80 (158)
T ss_dssp CCCCEECHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99764589999999999999987022889999999986699000666799999999899999999999986314787546
Q ss_pred CCCCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEEEC
Q ss_conf 33211136579995347652359999631013345881501317899872888887899982897199999998979
Q gi|254780440|r 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158 (158)
Q Consensus 82 ~~~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~yi 158 (158)
+.+.|.|||+|++.+ +++++.+|+||||+|+|+..|+||+.||||+||||+++||+|+|++|+|...|+|++|+||
T Consensus 81 ~~~~v~~gs~V~~~~-~~~~~~~~~iVg~~ead~~~~~IS~~SPlG~ALlGkk~Gd~V~v~~p~G~~~~~I~~I~y~ 156 (158)
T 2p4v_A 81 QEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156 (158)
T ss_dssp SCSSCSSSCEEEEEC-TTCCCEEEEBCCSTTCCSSSCCBCTTSHHHHHSTTCCTTCEEEEECSSCEEEEEEEEEECC
T ss_pred CCCCCCCCEEEEEEE-CCCCEEEEEEECHHHHHCCCCEECCCCHHHHHHHCCCCCCEEEEEECCCCEEEEEEEEEEC
T ss_conf 666435865999972-5886489998550654156885757898999970899999899980898789999999924