HHsearch results for GI: 254780440 and protein with PDBid: 3bmb_A
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=99.96 E-value=2.3e-29 Score=206.49 Aligned_cols=124 Identities=22% Similarity=0.348 Sum_probs=109.5
Q ss_pred CCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9984-314889999999999999872489999999999751762224304899988768799999999744442104721
Q gi|254780440|r 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIS 79 (158)
Q Consensus 1 M~~k-~~lT~~g~~~L~~El~~l~~~~r~~~~~~i~~A~~~GDl~ENaeY~aAke~q~~~~~ri~~L~~~L~~A~iv~~~ 79 (158)
|+.+ |++|...+++|+ ||.||++|++++. +.+|+..|++|+|++++
T Consensus 1 m~rP~i~~~~~D~~rL~-------------------------~l~e~~~~~~~~~--------~~~L~~~L~~A~Iv~~~ 47 (136)
T 3bmb_A 1 MSRPTIIINDLDAERID-------------------------ILLEQPAYAGLPI--------ADALNAELDRAQMCSPE 47 (136)
T ss_dssp -CCCCCEEEHHHHHHHH-------------------------HHHHSGGGTTCHH--------HHHHHHHHHTCEEECGG
T ss_pred CCCCCEEEEHHHHHHHH-------------------------HHHHCHHCCCCHH--------HHHHHHHHCCCEEECCC
T ss_conf 99997763288999999-------------------------9985422247578--------99999987678998964
Q ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCE-EEEEEEEEEE
Q ss_conf 01332111365799953476523599996310133458815013178998728888878999828971-9999999897
Q gi|254780440|r 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157 (158)
Q Consensus 80 ~~~~~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~-~~~~Il~I~y 157 (158)
.++.++|+|||+|+++|.+++++++|+||||+|+|+..++||+.||||+||||+++||+|.|++|+|. ..|+|++|+|
T Consensus 48 ~~~~~~V~~Gs~V~~~~~~~~~~~~~~lV~~~ead~~~~~IS~~SPlG~ALlG~~~Gd~v~~~~p~G~~~~~~I~~I~y 126 (136)
T 3bmb_A 48 EMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126 (136)
T ss_dssp GCCTTBCCTTCEEEEEETTTCCEEEEEEECGGGCCCTTTEEETTSHHHHHHTTCBTTCEEEEEETTTEEEEEEEEEEEE
T ss_pred CCCCCEEEECCEEEEEECCCCCEEEEEEECHHHHCCCCCEEEECCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEE
T ss_conf 4899989848799999888997799999895781466626886199999972998899999998999889999999986