HHSEARCH alignment of GI: 254780440 and SCOP domain: d1grja2

Alignment

Probab=99.88  E-value=1.5e-23  Score=167.89  Aligned_cols=77  Identities=44%  Similarity=0.867  Sum_probs=75.1

Q ss_pred             CCCCCCCCCEEEEEECCCCCEEEEEEECHHHCCCCCCEECCCCHHHHHHCCCCCCCEEEEECCCCEEEEEEEEEEEC
Q ss_conf             33211136579995347652359999631013345881501317899872888887899982897199999998979
Q gi|254780440|r   82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI  158 (158)
Q Consensus        82 ~~~~V~~Gs~V~l~d~~~~~~~~~~lVg~~e~d~~~~~IS~~SPlG~ALlG~~~Gd~V~v~~p~G~~~~~Il~I~yi  158 (158)
                      ++++|.|||+|+++|.+++++.+|+||||+|+|+..++||+.||||+||||+++||+|+|.+|+|.++|+|++|+||
T Consensus         3 ~~~~V~~Gs~V~l~d~~~~~~~~~~iVg~~ead~~~~~IS~~SPlG~ALlG~~~Gd~v~v~~p~g~~~~~I~~I~y~   79 (79)
T d1grja2           3 NNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL   79 (79)
T ss_dssp             CCSBCCTTCEEEEEETTTTEEEEEEEECTTTCBGGGTEEESSSHHHHHHTTCBTTCEECC------CCEEEEEEECC
T ss_pred             CCCEEEECCEEEEEECCCCCEEEEEEECHHHCCCCCCEEEECCHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEEEC
T ss_conf             89999959699999988999999999998890044996872798999973999999999996998699999999989

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: GreA transcript cleavage factor, C-terminal domain
domain: GreA transcript cleavage factor, C-terminal domain
species: Escherichia coli [TaxId: 562]