BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780440|ref|YP_003064853.1| transcription elongation
factor GreA [Candidatus Liberibacter asiaticus str. psy62]
(158 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780440|ref|YP_003064853.1| transcription elongation factor GreA [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040117|gb|ACT56913.1| transcription elongation factor GreA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 158
Score = 316 bits (810), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE
Sbjct: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV
Sbjct: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI
Sbjct: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
>gi|315122111|ref|YP_004062600.1| transcription elongation factor GreA [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495513|gb|ADR52112.1| transcription elongation factor GreA [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 158
Score = 289 bits (740), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 141/158 (89%), Positives = 151/158 (95%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEAR+YGDLSENAEYQAAKELQ++NE
Sbjct: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARSYGDLSENAEYQAAKELQSMNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELENI T AEVIDIS MSG ++AFGATVSLV++ SGDKKNYQIVGDQEADVQSGLV
Sbjct: 61 GRIAELENITTCAEVIDISKMSGSKVAFGATVSLVDETSGDKKNYQIVGDQEADVQSGLV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGKELGD +SVNAPGG+K YEILQVLWI
Sbjct: 121 SISSPIARALIGKELGDTVSVNAPGGQKNYEILQVLWI 158
>gi|190892720|ref|YP_001979262.1| transcription elongation factor (transcript cleavage factor)
protein [Rhizobium etli CIAT 652]
gi|238692510|sp|B3PUK3|GREA_RHIE6 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|190697999|gb|ACE92084.1| transcription elongation factor (transcript cleavage factor)
protein [Rhizobium etli CIAT 652]
gi|327192705|gb|EGE59642.1| transcription elongation factor (transcript cleavage factor)
protein [Rhizobium etli CNPAF512]
Length = 158
Score = 236 bits (602), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 112/157 (71%), Positives = 136/157 (86%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDK+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVDKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAEVID++ MSGD+I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRITELEDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157
>gi|209550295|ref|YP_002282212.1| transcription elongation factor GreA [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|238058236|sp|B5ZXG2|GREA_RHILW RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|209536051|gb|ACI55986.1| transcription elongation factor GreA [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 158
Score = 234 bits (598), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 111/157 (70%), Positives = 137/157 (87%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++ RAEVID++ MSGD+I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRISELEDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157
>gi|86358571|ref|YP_470463.1| transcription elongation factor GreA [Rhizobium etli CFN 42]
gi|123738296|sp|Q2K600|GREA_RHIEC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|86282673|gb|ABC91736.1| transcription elongation factor (transcript cleavage factor)
protein [Rhizobium etli CFN 42]
Length = 158
Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 111/157 (70%), Positives = 136/157 (86%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAEVID++ MSGD+I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRITELEDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157
>gi|241205678|ref|YP_002976774.1| transcription elongation factor GreA [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859568|gb|ACS57235.1| transcription elongation factor GreA [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 158
Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 110/157 (70%), Positives = 137/157 (87%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++ RAEVID++ MSGD+I FGA V L+++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRISELEDLTARAEVIDLTKMSGDKIKFGAKVKLIDEDTDEEKTYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157
>gi|116253164|ref|YP_769002.1| transcription elongation factor GreA [Rhizobium leguminosarum bv.
viciae 3841]
gi|7387717|sp|O68546|GREA_RHILV RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123081835|sp|Q1MDR7|GREA_RHIL3 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|2944085|gb|AAC05214.1| transcription elongation factor homolog [Rhizobium leguminosarum]
gi|115257812|emb|CAK08910.1| putative transcription elongation factor [Rhizobium leguminosarum
bv. viciae 3841]
Length = 158
Score = 234 bits (596), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 110/157 (70%), Positives = 137/157 (87%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++ RAEVID++ MSGD+I FGA V L+++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRISELEDLTARAEVIDLTKMSGDKIKFGAKVKLIDEDTEEEKTYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157
>gi|227822120|ref|YP_002826091.1| transcription elongation factor GreA [Sinorhizobium fredii NGR234]
gi|227341120|gb|ACP25338.1| transcription elongation factor GreA [Sinorhizobium fredii NGR234]
Length = 255
Score = 233 bits (594), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 111/157 (70%), Positives = 135/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDK+P+T GF +Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 98 MVDKVPMTQGGFANLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 157
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++I RAEVID+S MSG +I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 158 GRVSELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKAGRI 217
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEIL V W
Sbjct: 218 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW 254
>gi|218671794|ref|ZP_03521463.1| transcription elongation factor GreA [Rhizobium etli GR56]
Length = 158
Score = 233 bits (593), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 110/157 (70%), Positives = 136/157 (86%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++ RAEVID++ MSG +I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRISELEDLTARAEVIDLTKMSGHKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157
>gi|47716785|gb|AAT37570.1| GreA [Sinorhizobium meliloti]
Length = 163
Score = 231 bits (589), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/157 (70%), Positives = 134/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDK+P+T GF +Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 6 MVDKVPMTQGGFVNLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 65
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++I RAEVID+S MSG +I FGA V LV++++ ++K YQIVGDQEADV+ G +
Sbjct: 66 GRISELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKQGRI 125
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEIL V W
Sbjct: 126 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW 162
>gi|15965326|ref|NP_385679.1| transcription elongation factor GreA [Sinorhizobium meliloti 1021]
gi|150396472|ref|YP_001326939.1| transcription elongation factor GreA [Sinorhizobium medicae WSM419]
gi|307307952|ref|ZP_07587677.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
gi|307317183|ref|ZP_07596624.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
gi|7387719|sp|P56894|GREA_RHIME RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189042248|sp|A6U8X4|GREA_SINMW RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|6224910|gb|AAF06007.1|AF193023_1 GreA [Sinorhizobium meliloti]
gi|15074506|emb|CAC46152.1| Transcription elongation factor [Sinorhizobium meliloti 1021]
gi|51451367|gb|AAU03120.1| GreA [Sinorhizobium meliloti]
gi|150027987|gb|ABR60104.1| transcription elongation factor GreA [Sinorhizobium medicae WSM419]
gi|306897271|gb|EFN28016.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
gi|306901568|gb|EFN32171.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
Length = 158
Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 111/157 (70%), Positives = 134/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDK+P+T GF +Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVDKVPMTQGGFVNLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++I RAEVID+S MSG +I FGA V LV++++ ++K YQIVGDQEADV+ G +
Sbjct: 61 GRISELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKQGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEIL V W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW 157
>gi|13472314|ref|NP_103881.1| transcription elongation factor GreA [Mesorhizobium loti
MAFF303099]
gi|25453003|sp|Q98I49|GREA_RHILO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|14023060|dbj|BAB49667.1| transcriptional elongation factor [Mesorhizobium loti MAFF303099]
Length = 157
Score = 230 bits (586), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 139/157 (88%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +GF +++ELRWRQQEERPRII+AISEAR++GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MNKVPMTGEGFASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++I RAEVID++ +SGD++ FGATV LV++++ +KK YQIVGDQEADV+SG +S
Sbjct: 61 RVNELEDLIARAEVIDVTKLSGDKVKFGATVVLVDEDTEEKKTYQIVGDQEADVKSGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGKE+GD I VNAPGG + YEI+QV +I
Sbjct: 121 ISSPIARALIGKEVGDAIEVNAPGGARGYEIVQVQFI 157
>gi|222086556|ref|YP_002545090.1| transcription elongation factor (transcript cleavage factor)
protein [Agrobacterium radiobacter K84]
gi|254799543|sp|B9J753|GREA_AGRRK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|221724004|gb|ACM27160.1| transcription elongation factor (transcript cleavage factor)
protein [Agrobacterium radiobacter K84]
Length = 158
Score = 230 bits (586), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 135/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AISEARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTQNGFVKLQEELRWRQQEERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAEVID++ MSG +I FGA V L+++++ ++K+YQIVGDQEADV++G +
Sbjct: 61 GRIGELEDLTARAEVIDLTKMSGSKIKFGAKVKLIDEDTEEEKSYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEIL + W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKAYEILSISW 157
>gi|15889462|ref|NP_355143.1| transcription elongation factor GreA [Agrobacterium tumefaciens
str. C58]
gi|25452989|sp|Q8UDE5|GREA_AGRT5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|15157330|gb|AAK87928.1| transcription elongation facto [Agrobacterium tumefaciens str. C58]
Length = 158
Score = 229 bits (585), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 110/157 (70%), Positives = 135/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELR+RQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTQGGFVKLQEELRFRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAEVID+S MSG +I FGATV L++++S ++K YQIVGDQEADV++G +
Sbjct: 61 GRITELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDSDEEKTYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEIL V W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKGYEILAVQW 157
>gi|260464000|ref|ZP_05812195.1| transcription elongation factor GreA [Mesorhizobium opportunistum
WSM2075]
gi|259030171|gb|EEW31452.1| transcription elongation factor GreA [Mesorhizobium opportunistum
WSM2075]
Length = 158
Score = 229 bits (585), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 108/158 (68%), Positives = 139/158 (87%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++K+P+T +GF +++ELRWRQQEERPRII+AISEAR++GDLSENAEY AAKE Q+LNE
Sbjct: 1 MMNKVPMTGEGFASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE+ I RAEVID++ +SG+++ FGATV LV++++ +KK YQIVGDQEADV+SG +
Sbjct: 61 GRVNELEDYIARAEVIDVTKLSGEKVKFGATVVLVDEDTEEKKTYQIVGDQEADVKSGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGKE+GD I VNAPGG + YEI+QV +I
Sbjct: 121 SISSPIARALIGKEVGDAIEVNAPGGARGYEIVQVQFI 158
>gi|319781954|ref|YP_004141430.1| transcription elongation factor GreA [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167842|gb|ADV11380.1| transcription elongation factor GreA [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 157
Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 109/157 (69%), Positives = 138/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +GF +++ELRWRQQEERPRII+AISEAR++GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MNKVPMTGEGFASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVID+S +SGD+I FGATV LV++++ +KK Y+IVGDQEADV+SG +S
Sbjct: 61 RVNELEDYIARAEVIDVSKLSGDKIKFGATVVLVDEDTEEKKTYRIVGDQEADVKSGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGKE+GD I VNAPGG + YEI+QV +I
Sbjct: 121 ISSPIARALIGKEVGDAIEVNAPGGARGYEIVQVQFI 157
>gi|222149296|ref|YP_002550253.1| transcription elongation factor GreA [Agrobacterium vitis S4]
gi|254799544|sp|B9JYZ7|GREA_AGRVS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|221736280|gb|ACM37243.1| transcription elongation facto [Agrobacterium vitis S4]
Length = 158
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 134/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDK+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVDKVPMTQNGFSKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++ RAEVID+S MSG +I FGATV L+++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRVSELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDTDEEKIYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARA+IGKE GD I V APGG K YEI+ V W
Sbjct: 121 SISSPIARAMIGKEAGDSIEVVAPGGSKAYEIIAVNW 157
>gi|14041681|emb|CAC38777.1| GreA protein [Rhizobium tropici]
Length = 158
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 135/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTQNGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++ RAEVID++ MSG +I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRISELEDLTARAEVIDLTKMSGSKIKFGAKVKLVDEDTEEEKIYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEIL + W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKGYEILSITW 157
>gi|325293542|ref|YP_004279406.1| transcription elongation factor GreA [Agrobacterium sp. H13-3]
gi|325061395|gb|ADY65086.1| transcription elongation factor GreA [Agrobacterium sp. H13-3]
Length = 158
Score = 227 bits (578), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 109/157 (69%), Positives = 135/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELR+RQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTHGGFIKLQEELRFRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAEVID+S MSG +I FGATV L++++S +++ YQIVGDQEADV++G +
Sbjct: 61 GRITELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDSDEERIYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEIL V W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKGYEILAVQW 157
>gi|163761166|ref|ZP_02168243.1| transcription elongation factor (transcript cleavage factor)
protein [Hoeflea phototrophica DFL-43]
gi|162281717|gb|EDQ32011.1| transcription elongation factor (transcript cleavage factor)
protein [Hoeflea phototrophica DFL-43]
Length = 158
Score = 226 bits (576), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 107/157 (68%), Positives = 132/157 (84%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T G+ K+Q+ELRWRQQ ERPRII+AISEARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTQGGYTKLQEELRWRQQSERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE+ +RAE+ID+S MSGD + FGATVSLV++++ ++K YQIVGDQEADV+ G +
Sbjct: 61 GRIGELEDYTSRAEIIDVSKMSGDTVKFGATVSLVDEDTDEEKTYQIVGDQEADVKQGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPI+RALIGK +GD I V APGG K YEIL V W
Sbjct: 121 SISSPISRALIGKSVGDSIEVVAPGGSKAYEILAVKW 157
>gi|319408896|emb|CBI82553.1| transcription elongation factor GreA [Bartonella schoenbuchensis
R1]
Length = 157
Score = 224 bits (570), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 104/157 (66%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTTGFENLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVID+S +SGDRI FGAT+ L+ +++ +KK YQIVGDQEADV++G +S
Sbjct: 61 RINELEDYIARAEVIDVSRLSGDRIKFGATIKLLNEDTEEKKVYQIVGDQEADVKTGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG YEI+++ +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKIQYI 157
>gi|49474490|ref|YP_032532.1| transcription elongation factor GreA [Bartonella quintana str.
Toulouse]
gi|81646921|sp|Q6FZ57|GREA_BARQU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|49239994|emb|CAF26408.1| Transcription elongation factor greA [Bartonella quintana str.
Toulouse]
Length = 157
Score = 223 bits (569), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 104/157 (66%), Positives = 137/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQEERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFESLKKELRWRQQEERPRIIEAISEARAHGDLSENAEYHAAKEAQSYNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVI++S +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV++G +S
Sbjct: 61 RINELEDYIARAEVINVSRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKTGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157
>gi|110634467|ref|YP_674675.1| transcription elongation factor GreA [Mesorhizobium sp. BNC1]
gi|123353513|sp|Q11GG5|GREA_MESSB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|110285451|gb|ABG63510.1| transcription elongation factor GreA [Chelativorans sp. BNC1]
Length = 157
Score = 223 bits (568), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 138/156 (88%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G++ +++ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MNKVPMTLAGYESLKEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ELE++I RAEVID++ +SGD + FGATV LV++++ ++K YQIVGDQEADV+SG +S
Sbjct: 61 RISELEDLIARAEVIDVTKLSGDTVKFGATVVLVDEDTEEEKTYQIVGDQEADVKSGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIARALIGK +GD+I VNAPGG + YE+L+V +
Sbjct: 121 ISSPIARALIGKGVGDLIEVNAPGGARGYEVLRVQY 156
>gi|237815897|ref|ZP_04594894.1| transcription elongation factor GreA [Brucella abortus str. 2308 A]
gi|237789195|gb|EEP63406.1| transcription elongation factor GreA [Brucella abortus str. 2308 A]
Length = 203
Score = 222 bits (565), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 137/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 47 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 106
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 107 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 166
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 167 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 203
>gi|163867955|ref|YP_001609159.1| transcription elongation factor GreA [Bartonella tribocorum CIP
105476]
gi|189042236|sp|A9IRC3|GREA_BART1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|161017606|emb|CAK01164.1| transcription elongation factor GreA [Bartonella tribocorum CIP
105476]
Length = 157
Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 104/157 (66%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVID+S +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDYIARAEVIDVSRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKIGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157
>gi|148560214|ref|YP_001259382.1| transcription elongation factor GreA [Brucella ovis ATCC 25840]
gi|148371471|gb|ABQ61450.1| transcription elongation factor GreA [Brucella ovis ATCC 25840]
Length = 203
Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 137/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 47 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 106
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 107 RINELEDLVARAEVIDVSKLTGDRIQFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 166
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 167 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 203
>gi|319898512|ref|YP_004158605.1| transcription elongation factor GreA [Bartonella clarridgeiae 73]
gi|319402476|emb|CBI76019.1| transcription elongation factor GreA [Bartonella clarridgeiae 73]
Length = 157
Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 102/157 (64%), Positives = 138/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVI++S +SGDRI FGAT++L+++ + ++K YQIVGDQEADV++G +S
Sbjct: 61 RINELEDYIARAEVINVSRLSGDRIKFGATINLLDEETEERKVYQIVGDQEADVKTGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG + YEI+++ +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGARNYEIIKIQYI 157
>gi|240850162|ref|YP_002971555.1| transcription elongation factor GreA [Bartonella grahamii as4aup]
gi|240267285|gb|ACS50873.1| transcription elongation factor GreA [Bartonella grahamii as4aup]
Length = 157
Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVID++ +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDYIARAEVIDVTRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKVGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157
>gi|17986791|ref|NP_539425.1| transcription elongation factor GreA [Brucella melitensis bv. 1
str. 16M]
gi|23502373|ref|NP_698500.1| transcription elongation factor GreA [Brucella suis 1330]
gi|62290393|ref|YP_222186.1| transcription elongation factor GreA [Brucella abortus bv. 1 str.
9-941]
gi|82700315|ref|YP_414889.1| transcription elongation factor GreA [Brucella melitensis biovar
Abortus 2308]
gi|161619451|ref|YP_001593338.1| transcription elongation factor GreA [Brucella canis ATCC 23365]
gi|163843758|ref|YP_001628162.1| transcription elongation factor GreA [Brucella suis ATCC 23445]
gi|189024618|ref|YP_001935386.1| transcription elongation factor GreA [Brucella abortus S19]
gi|225852983|ref|YP_002733216.1| transcription elongation factor GreA [Brucella melitensis ATCC
23457]
gi|254689690|ref|ZP_05152944.1| transcription elongation factor GreA [Brucella abortus bv. 6 str.
870]
gi|254694180|ref|ZP_05156008.1| transcription elongation factor GreA [Brucella abortus bv. 3 str.
Tulya]
gi|254697833|ref|ZP_05159661.1| transcription elongation factor GreA [Brucella abortus bv. 2 str.
86/8/59]
gi|254702221|ref|ZP_05164049.1| transcription elongation factor GreA [Brucella suis bv. 5 str. 513]
gi|254704756|ref|ZP_05166584.1| transcription elongation factor GreA [Brucella suis bv. 3 str. 686]
gi|254730722|ref|ZP_05189300.1| transcription elongation factor GreA [Brucella abortus bv. 4 str.
292]
gi|256045124|ref|ZP_05448025.1| transcription elongation factor GreA [Brucella melitensis bv. 1
str. Rev.1]
gi|256061556|ref|ZP_05451698.1| transcription elongation factor GreA [Brucella neotomae 5K33]
gi|256114061|ref|ZP_05454831.1| transcription elongation factor GreA [Brucella melitensis bv. 3
str. Ether]
gi|256257941|ref|ZP_05463477.1| transcription elongation factor GreA [Brucella abortus bv. 9 str.
C68]
gi|256263538|ref|ZP_05466070.1| transcription elongation factor grea [Brucella melitensis bv. 2
str. 63/9]
gi|256369920|ref|YP_003107431.1| transcription elongation factor GreA [Brucella microti CCM 4915]
gi|260546930|ref|ZP_05822669.1| transcription elongation factor grea [Brucella abortus NCTC 8038]
gi|260565274|ref|ZP_05835758.1| transcription elongation factor grea [Brucella melitensis bv. 1
str. 16M]
gi|260565998|ref|ZP_05836468.1| transcription elongation factor greA [Brucella suis bv. 4 str. 40]
gi|260755224|ref|ZP_05867572.1| transcription elongation factor grea [Brucella abortus bv. 6 str.
870]
gi|260758444|ref|ZP_05870792.1| transcription elongation factor grea [Brucella abortus bv. 4 str.
292]
gi|260762270|ref|ZP_05874613.1| transcription elongation factor grea [Brucella abortus bv. 2 str.
86/8/59]
gi|260884238|ref|ZP_05895852.1| transcription elongation factor grea [Brucella abortus bv. 9 str.
C68]
gi|261214487|ref|ZP_05928768.1| transcription elongation factor grea [Brucella abortus bv. 3 str.
Tulya]
gi|261325565|ref|ZP_05964762.1| transcription elongation factor grea [Brucella neotomae 5K33]
gi|261752795|ref|ZP_05996504.1| transcription elongation factor grea [Brucella suis bv. 5 str. 513]
gi|261755454|ref|ZP_05999163.1| transcription elongation factor grea [Brucella suis bv. 3 str. 686]
gi|265991559|ref|ZP_06104116.1| transcription elongation factor grea [Brucella melitensis bv. 1
str. Rev.1]
gi|265995396|ref|ZP_06107953.1| transcription elongation factor grea [Brucella melitensis bv. 3
str. Ether]
gi|294852821|ref|ZP_06793494.1| transcription elongation factor greA [Brucella sp. NVSL 07-0026]
gi|297248778|ref|ZP_06932496.1| transcription elongation factor greA [Brucella abortus bv. 5 str.
B3196]
gi|306843149|ref|ZP_07475769.1| transcription elongation factor GreA [Brucella sp. BO2]
gi|306844505|ref|ZP_07477094.1| transcription elongation factor GreA [Brucella sp. BO1]
gi|54037214|sp|P64272|GREA_BRUSU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54041322|sp|P64271|GREA_BRUME RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|75496478|sp|Q57C09|GREA_BRUAB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123768486|sp|Q2YRN8|GREA_BRUA2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189042237|sp|A9M6H1|GREA_BRUC2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189042238|sp|B0CHU1|GREA_BRUSI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238689389|sp|B2S6W5|GREA_BRUA1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799548|sp|C0REE0|GREA_BRUMB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|17982422|gb|AAL51689.1| transcription elongation factor grea [Brucella melitensis bv. 1
str. 16M]
gi|23348356|gb|AAN30415.1| transcription elongation factor GreA [Brucella suis 1330]
gi|62196525|gb|AAX74825.1| GreA, transcription elongation factor [Brucella abortus bv. 1 str.
9-941]
gi|82616416|emb|CAJ11479.1| Prokaryotic transcription elongation factor GreA/GreB:Prokaryotic
transcription elongation factor GreA [Brucella
melitensis biovar Abortus 2308]
gi|161336262|gb|ABX62567.1| transcription elongation factor GreA [Brucella canis ATCC 23365]
gi|163674481|gb|ABY38592.1| transcription elongation factor GreA [Brucella suis ATCC 23445]
gi|189020190|gb|ACD72912.1| transcription elongation factor GreA [Brucella abortus S19]
gi|225641348|gb|ACO01262.1| transcription elongation factor GreA [Brucella melitensis ATCC
23457]
gi|256000083|gb|ACU48482.1| transcription elongation factor GreA [Brucella microti CCM 4915]
gi|260095980|gb|EEW79857.1| transcription elongation factor grea [Brucella abortus NCTC 8038]
gi|260151342|gb|EEW86436.1| transcription elongation factor grea [Brucella melitensis bv. 1
str. 16M]
gi|260155516|gb|EEW90596.1| transcription elongation factor greA [Brucella suis bv. 4 str. 40]
gi|260668762|gb|EEX55702.1| transcription elongation factor grea [Brucella abortus bv. 4 str.
292]
gi|260672702|gb|EEX59523.1| transcription elongation factor grea [Brucella abortus bv. 2 str.
86/8/59]
gi|260675332|gb|EEX62153.1| transcription elongation factor grea [Brucella abortus bv. 6 str.
870]
gi|260873766|gb|EEX80835.1| transcription elongation factor grea [Brucella abortus bv. 9 str.
C68]
gi|260916094|gb|EEX82955.1| transcription elongation factor grea [Brucella abortus bv. 3 str.
Tulya]
gi|261301545|gb|EEY05042.1| transcription elongation factor grea [Brucella neotomae 5K33]
gi|261742548|gb|EEY30474.1| transcription elongation factor grea [Brucella suis bv. 5 str. 513]
gi|261745207|gb|EEY33133.1| transcription elongation factor grea [Brucella suis bv. 3 str. 686]
gi|262766509|gb|EEZ12298.1| transcription elongation factor grea [Brucella melitensis bv. 3
str. Ether]
gi|263002343|gb|EEZ14918.1| transcription elongation factor grea [Brucella melitensis bv. 1
str. Rev.1]
gi|263093566|gb|EEZ17591.1| transcription elongation factor grea [Brucella melitensis bv. 2
str. 63/9]
gi|294821410|gb|EFG38409.1| transcription elongation factor greA [Brucella sp. NVSL 07-0026]
gi|297175947|gb|EFH35294.1| transcription elongation factor greA [Brucella abortus bv. 5 str.
B3196]
gi|306275116|gb|EFM56872.1| transcription elongation factor GreA [Brucella sp. BO1]
gi|306286672|gb|EFM58230.1| transcription elongation factor GreA [Brucella sp. BO2]
gi|326539229|gb|ADZ87444.1| transcription elongation factor GreA [Brucella melitensis M5-90]
Length = 157
Score = 221 bits (563), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 137/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 157
>gi|254719540|ref|ZP_05181351.1| transcription elongation factor GreA [Brucella sp. 83/13]
gi|265984548|ref|ZP_06097283.1| transcription elongation factor grea [Brucella sp. 83/13]
gi|306838479|ref|ZP_07471320.1| transcription elongation factor GreA [Brucella sp. NF 2653]
gi|264663140|gb|EEZ33401.1| transcription elongation factor grea [Brucella sp. 83/13]
gi|306406443|gb|EFM62681.1| transcription elongation factor GreA [Brucella sp. NF 2653]
Length = 157
Score = 221 bits (562), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 137/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKFPMTPRGFEKLKEELRWRQQTERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 157
>gi|49475893|ref|YP_033934.1| transcription elongation factor GreA [Bartonella henselae str.
Houston-1]
gi|81647735|sp|Q6G2M7|GREA_BARHE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|49238701|emb|CAF27953.1| Transcription elongation factor greA [Bartonella henselae str.
Houston-1]
Length = 157
Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 103/157 (65%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQEERPRII+AISEARA+GDLS NAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQEERPRIIEAISEARAHGDLSGNAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVI++S +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV++G +S
Sbjct: 61 RINELEDYIARAEVINVSRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKTGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIEVQYI 157
>gi|121602520|ref|YP_989263.1| transcription elongation factor GreA [Bartonella bacilliformis
KC583]
gi|189042235|sp|A1UTG0|GREA_BARBK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|120614697|gb|ABM45298.1| transcription elongation factor GreA [Bartonella bacilliformis
KC583]
Length = 157
Score = 220 bits (561), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 104/157 (66%), Positives = 135/157 (85%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFETLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSYNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVID+S +SG++I FGATV L+ +++ +KK YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDYIARAEVIDVSRLSGNQIKFGATVKLLNEDTEEKKVYQIVGDQEADVKIGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGKE GD+I VNAPGG YEI+++ +I
Sbjct: 121 ISSPIARALIGKEEGDVIEVNAPGGAHNYEIIKIQYI 157
>gi|153008990|ref|YP_001370205.1| transcription elongation factor GreA [Ochrobactrum anthropi ATCC
49188]
gi|189042242|sp|A6WZH2|GREA_OCHA4 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|151560878|gb|ABS14376.1| transcription elongation factor GreA [Ochrobactrum anthropi ATCC
49188]
Length = 157
Score = 219 bits (559), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKFPMTPGGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAE+ID+S +SGDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDLVARAEIIDVSKLSGDRIKFGATVTMIDEDTDEEKVYQIVGDQEADVKEGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIVGLKFV 157
>gi|239832384|ref|ZP_04680713.1| transcription elongation factor GreA [Ochrobactrum intermedium LMG
3301]
gi|239824651|gb|EEQ96219.1| transcription elongation factor GreA [Ochrobactrum intermedium LMG
3301]
Length = 157
Score = 219 bits (558), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 102/157 (64%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKFPMTPGGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAEVID+S +SGDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDLVARAEVIDVSKLSGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIVGLKFV 157
>gi|225627946|ref|ZP_03785982.1| transcription elongation factor GreA [Brucella ceti str. Cudo]
gi|225617109|gb|EEH14155.1| transcription elongation factor GreA [Brucella ceti str. Cudo]
Length = 203
Score = 218 bits (554), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 47 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 106
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 107 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 166
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISS IARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 167 ISSLIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 203
>gi|254708169|ref|ZP_05169997.1| transcription elongation factor GreA [Brucella pinnipedialis
M163/99/10]
gi|254710541|ref|ZP_05172352.1| transcription elongation factor GreA [Brucella pinnipedialis B2/94]
gi|254714723|ref|ZP_05176534.1| transcription elongation factor GreA [Brucella ceti M644/93/1]
gi|254717784|ref|ZP_05179595.1| transcription elongation factor GreA [Brucella ceti M13/05/1]
gi|256032034|ref|ZP_05445648.1| transcription elongation factor GreA [Brucella pinnipedialis
M292/94/1]
gi|256160231|ref|ZP_05457925.1| transcription elongation factor GreA [Brucella ceti M490/95/1]
gi|256255437|ref|ZP_05460973.1| transcription elongation factor GreA [Brucella ceti B1/94]
gi|260169170|ref|ZP_05755981.1| transcription elongation factor GreA [Brucella sp. F5/99]
gi|261219633|ref|ZP_05933914.1| transcription elongation factor grea [Brucella ceti M13/05/1]
gi|261222642|ref|ZP_05936923.1| transcription elongation factor grea [Brucella ceti B1/94]
gi|261315677|ref|ZP_05954874.1| transcription elongation factor grea [Brucella pinnipedialis
M163/99/10]
gi|261318115|ref|ZP_05957312.1| transcription elongation factor grea [Brucella pinnipedialis B2/94]
gi|261322521|ref|ZP_05961718.1| transcription elongation factor grea [Brucella ceti M644/93/1]
gi|261758684|ref|ZP_06002393.1| transcription elongation factor greA [Brucella sp. F5/99]
gi|265989145|ref|ZP_06101702.1| transcription elongation factor grea [Brucella pinnipedialis
M292/94/1]
gi|265998607|ref|ZP_06111164.1| transcription elongation factor grea [Brucella ceti M490/95/1]
gi|260921226|gb|EEX87879.1| transcription elongation factor grea [Brucella ceti B1/94]
gi|260924722|gb|EEX91290.1| transcription elongation factor grea [Brucella ceti M13/05/1]
gi|261295211|gb|EEX98707.1| transcription elongation factor grea [Brucella ceti M644/93/1]
gi|261297338|gb|EEY00835.1| transcription elongation factor grea [Brucella pinnipedialis B2/94]
gi|261304703|gb|EEY08200.1| transcription elongation factor grea [Brucella pinnipedialis
M163/99/10]
gi|261738668|gb|EEY26664.1| transcription elongation factor greA [Brucella sp. F5/99]
gi|262553231|gb|EEZ09065.1| transcription elongation factor grea [Brucella ceti M490/95/1]
gi|264661342|gb|EEZ31603.1| transcription elongation factor grea [Brucella pinnipedialis
M292/94/1]
Length = 157
Score = 216 bits (551), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 100/157 (63%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISS IARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ISSLIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 157
>gi|326409521|gb|ADZ66586.1| transcription elongation factor GreA [Brucella melitensis M28]
Length = 152
Score = 214 bits (546), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/152 (65%), Positives = 133/152 (87%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEGR+ EL
Sbjct: 1 MTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEGRINEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +SISSPI
Sbjct: 61 EDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRISISSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 152
>gi|323139044|ref|ZP_08074103.1| transcription elongation factor GreA [Methylocystis sp. ATCC 49242]
gi|322395704|gb|EFX98246.1| transcription elongation factor GreA [Methylocystis sp. ATCC 49242]
Length = 157
Score = 210 bits (535), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 98/157 (62%), Positives = 133/157 (84%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T+ G+ + +ELR RQQE+RPRII+ ISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MDKVPMTAPGYAALAEELRRRQQEDRPRIIQQISEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ ++RAEVID+S ++G I FGATV++V++++ ++K YQIVG+ EADV+SG VS
Sbjct: 61 RIAELEDKLSRAEVIDVSKLTGSTIKFGATVTVVDEDTDEEKAYQIVGETEADVKSGRVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I+SPIARALIGK +GD + V PGG K+YEIL+V ++
Sbjct: 121 ITSPIARALIGKTVGDTVEVKTPGGGKSYEILKVAFV 157
>gi|182677861|ref|YP_001832007.1| transcription elongation factor GreA [Beijerinckia indica subsp.
indica ATCC 9039]
gi|238691231|sp|B2IHJ7|GREA_BEII9 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|182633744|gb|ACB94518.1| transcription elongation factor GreA [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 157
Score = 207 bits (528), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 96/156 (61%), Positives = 133/156 (85%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK P+T +G+ + +EL+ RQQEERPRII+AI+EAR++GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MDKFPMTPEGYHALDEELKRRQQEERPRIIQAIAEARSHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ ++RAE+ID+S +SG+ + FGATV+LV++++ ++K YQIVG+ EADV++G VS
Sbjct: 61 RIAELEDKLSRAEIIDVSKLSGNTVMFGATVTLVDEDTEEEKIYQIVGESEADVKAGRVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP ARALIGK++GD + VN PGG K+YEIL V +
Sbjct: 121 ITSPTARALIGKKIGDSVEVNTPGGGKSYEILNVAF 156
>gi|296445401|ref|ZP_06887359.1| GreA/GreB family elongation factor [Methylosinus trichosporium
OB3b]
gi|296257162|gb|EFH04231.1| GreA/GreB family elongation factor [Methylosinus trichosporium
OB3b]
Length = 157
Score = 207 bits (527), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 131/157 (83%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T+ G+ + ELR RQQ ERPRII+AISEAR++GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MDKVPMTAAGYAALDTELRHRQQTERPRIIQAISEARSHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+A+LE+ ++RAEVID+S +SG I FGATV+LV++++ ++K YQIVG+ EAD ++G VS
Sbjct: 61 RIADLEDKLSRAEVIDVSKLSGSTIKFGATVTLVDEDTEEEKAYQIVGEPEADAKNGRVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I+SPIARALIGK+ GD + V PGG K+YEIL+V ++
Sbjct: 121 IASPIARALIGKKAGDTVEVKTPGGGKSYEILKVAFV 157
>gi|170741569|ref|YP_001770224.1| transcription elongation factor GreA [Methylobacterium sp. 4-46]
gi|238688050|sp|B0U8M0|GREA_METS4 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|168195843|gb|ACA17790.1| transcription elongation factor GreA [Methylobacterium sp. 4-46]
Length = 158
Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 93/157 (59%), Positives = 132/157 (84%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T +G+ +++EL+ RQQ ERPRII+AI+EARA GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MDKVPITIRGYAALEEELKHRQQVERPRIIQAIAEARALGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++I+RAE+ID+S +SG ++ FGATV L+++++ ++K YQIVG+ EADV+SG VS
Sbjct: 61 RVLELESLISRAEIIDVSKLSGTKVKFGATVQLIDEDTEEEKTYQIVGEPEADVRSGRVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I+SP+ARALIGK +GD + V PGG K+YEI+ + ++
Sbjct: 121 ITSPVARALIGKGVGDTVEVTTPGGGKSYEIVGIRYV 157
>gi|220924293|ref|YP_002499595.1| transcription elongation factor GreA [Methylobacterium nodulans ORS
2060]
gi|254799562|sp|B8IBN8|GREA_METNO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|219948900|gb|ACL59292.1| transcription elongation factor GreA [Methylobacterium nodulans ORS
2060]
Length = 158
Score = 204 bits (518), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 94/156 (60%), Positives = 132/156 (84%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +GF ++QEL+ RQQ ERPRII+AI+EARA GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKVPITIRGFAALEQELKHRQQVERPRIIQAIAEARALGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++I+RAEVID++ +SG ++ FGATV L+++++ ++K YQIVG+ EADV+SG VS
Sbjct: 61 RVLELESLISRAEVIDVAKLSGSKVKFGATVQLIDEDTEEEKTYQIVGEPEADVRSGRVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+ARALIGK +GD + V+ PGG K+YEI+ + +
Sbjct: 121 ITSPVARALIGKGVGDTVEVSTPGGGKSYEIVGISF 156
>gi|114704985|ref|ZP_01437893.1| transcription elongation factor (transcript cleavage factor)
protein [Fulvimarina pelagi HTCC2506]
gi|114539770|gb|EAU42890.1| transcription elongation factor (transcript cleavage factor)
protein [Fulvimarina pelagi HTCC2506]
Length = 157
Score = 203 bits (517), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 104/154 (67%), Positives = 136/154 (88%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T++GF+ +++ELR RQQEERPRII+AISEARA+GDLSENAEY AAKE Q+LNEGR+
Sbjct: 3 KVPMTTRGFETLKEELRRRQQEERPRIIQAISEARAHGDLSENAEYHAAKEAQSLNEGRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+ELE++ RAEVID+S MSGD++ FGATV LV++ + +++ +QIVGDQEADV+SG +SIS
Sbjct: 63 SELEDVTARAEVIDVSKMSGDKVMFGATVKLVDEETEEERLFQIVGDQEADVKSGRISIS 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALIGKE GD + V APGG ++YE+L+VLW
Sbjct: 123 SPIARALIGKEEGDTVEVAAPGGARSYEVLEVLW 156
>gi|158422770|ref|YP_001524062.1| transcription elongation factor GreA [Azorhizobium caulinodans ORS
571]
gi|189042232|sp|A8HR94|GREA_AZOC5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|158329659|dbj|BAF87144.1| transcription elongation factor [Azorhizobium caulinodans ORS 571]
Length = 157
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 96/156 (61%), Positives = 131/156 (83%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GF +++ELR+RQQ ERPRII AISEARA+GDLSENAEY AAKELQ+LNEG
Sbjct: 1 MEKIPMTGAGFVALEEELRFRQQVERPRIISAISEARAHGDLSENAEYHAAKELQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ I+RAEVID+S +SGD + FGATV+LV++++ +++ +QIVGD EAD ++G +S
Sbjct: 61 RIAELEDKISRAEVIDVSKLSGDIVKFGATVTLVDEDTEEERVWQIVGDSEADAKAGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSP+ARALIGK+ G + V P G +++EI++V W
Sbjct: 121 ISSPVARALIGKKKGSSVEVVTPKGARSFEIVEVRW 156
>gi|188580289|ref|YP_001923734.1| transcription elongation factor GreA [Methylobacterium populi
BJ001]
gi|179343787|gb|ACB79199.1| transcription elongation factor GreA [Methylobacterium populi
BJ001]
Length = 160
Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/156 (60%), Positives = 127/156 (81%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T++G+ +++EL+ RQQ ERPRII+AISEARA GDLSENAEY AAKE Q+ NEG
Sbjct: 3 IDKLPITARGYAALEEELKQRQQVERPRIIQAISEARALGDLSENAEYHAAKEAQSHNEG 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++I RAE+ID S +SG +I FGA V LV++++ ++K YQ+VG+ EADV+ G VS
Sbjct: 63 RVLELESMIARAEIIDTSKLSGSKIKFGARVKLVDEDTEEEKTYQLVGEPEADVREGRVS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIARALIGK +GD + V PGG K+YE++ V W
Sbjct: 123 ISSPIARALIGKAVGDTVEVTTPGGGKSYEVVAVEW 158
>gi|170747000|ref|YP_001753260.1| transcription elongation factor GreA [Methylobacterium
radiotolerans JCM 2831]
gi|170653522|gb|ACB22577.1| transcription elongation factor GreA [Methylobacterium
radiotolerans JCM 2831]
Length = 179
Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/156 (61%), Positives = 128/156 (82%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T +G +++EL+ RQQ ER RII+AI+EARA GDLSENAEY AAKE Q+ NEG
Sbjct: 22 IDKVPITVRGLAALEEELKHRQQVERQRIIQAIAEARALGDLSENAEYHAAKEAQSHNEG 81
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++I RAEVID++ +SGDRI FGATV LV++++ ++K YQIVG+ EADV+SG VS
Sbjct: 82 RVLELESMIARAEVIDVTKLSGDRIKFGATVKLVDEDTEEEKTYQIVGEPEADVRSGRVS 141
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIARALIGK +GD + V PGG K+YE++ V +
Sbjct: 142 ITSPIARALIGKGVGDTVEVTTPGGGKSYEVVAVQY 177
>gi|254503831|ref|ZP_05115982.1| transcription elongation factor GreA subfamily [Labrenzia
alexandrii DFL-11]
gi|222439902|gb|EEE46581.1| transcription elongation factor GreA subfamily [Labrenzia
alexandrii DFL-11]
Length = 157
Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 96/157 (61%), Positives = 129/157 (82%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+TS G+ +Q EL+ R ERPRI+ AISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKVPMTSAGYTMLQSELKERTGVERPRIVDAISEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ ++RAE+ID+S +SGD + FGATVSLV++++ ++K Y IVGD E+DV+ VS
Sbjct: 61 RIAELEDKLSRAEIIDVSKLSGDVVKFGATVSLVDEDTEEEKKYMIVGDVESDVKQSKVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK +GD + V APGG ++YEI++V +I
Sbjct: 121 ISSPIARALIGKTVGDSVEVAAPGGARSYEIVEVQFI 157
>gi|163850521|ref|YP_001638564.1| transcription elongation factor GreA [Methylobacterium extorquens
PA1]
gi|218529218|ref|YP_002420034.1| transcription elongation factor GreA [Methylobacterium
chloromethanicum CM4]
gi|240137586|ref|YP_002962057.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Methylobacterium extorquens AM1]
gi|254560057|ref|YP_003067152.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Methylobacterium extorquens DM4]
gi|163662126|gb|ABY29493.1| transcription elongation factor GreA [Methylobacterium extorquens
PA1]
gi|218521521|gb|ACK82106.1| transcription elongation factor GreA [Methylobacterium
chloromethanicum CM4]
gi|240007554|gb|ACS38780.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Methylobacterium extorquens AM1]
gi|254267335|emb|CAX23167.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Methylobacterium extorquens DM4]
Length = 160
Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/156 (60%), Positives = 127/156 (81%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T++G+ +++EL+ RQQ ERPRII+AISEARA GDLSENAEY AAKE Q+ NEG
Sbjct: 3 IDKLPITARGYAALEEELKRRQQVERPRIIQAISEARALGDLSENAEYHAAKEAQSHNEG 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++I RAE+ID S +SG +I FGA V L+++++ ++K YQ+VG+ EADV+ G VS
Sbjct: 63 RVLELESMIARAEIIDTSKLSGSKIKFGARVKLLDEDTEEEKTYQLVGEPEADVREGRVS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIARALIGK +GD + V PGG K+YE++ V W
Sbjct: 123 ISSPIARALIGKAVGDTVEVTTPGGGKSYEVVAVEW 158
>gi|46203896|ref|ZP_00050819.2| COG0782: Transcription elongation factor [Magnetospirillum
magnetotacticum MS-1]
Length = 165
Score = 199 bits (507), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 94/156 (60%), Positives = 127/156 (81%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T++G+ +++EL+ RQQ ERPRII+AISEARA GDLSENAEY AAKE Q+ NEG
Sbjct: 8 IDKLPITARGYAALEEELKRRQQVERPRIIQAISEARALGDLSENAEYHAAKEAQSHNEG 67
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++I RAE+ID S +SG +I FGA V LV++++ ++K YQ+VG+ EADV+ G VS
Sbjct: 68 RVLELESMIARAEIIDTSKLSGSKIKFGARVKLVDEDTEEEKTYQLVGEPEADVREGRVS 127
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIARALIGK +GD + V PGG K+YE++ + W
Sbjct: 128 ISSPIARALIGKGVGDTVEVTTPGGGKSYEVVAIEW 163
>gi|304391328|ref|ZP_07373272.1| transcription elongation factor GreA [Ahrensia sp. R2A130]
gi|303296684|gb|EFL91040.1| transcription elongation factor GreA [Ahrensia sp. R2A130]
Length = 157
Score = 199 bits (507), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 123/157 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G ++ E + R E+R RI+ AISEAR +GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTKPGHAALEAEYKRRTSEDRHRIVAAISEAREHGDLSENAEYHAAKEQQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++I RAEVIDIS MSGD I FGATV L ++ +G++K+YQIVGDQEADV SG +S
Sbjct: 61 RIMELEDVIARAEVIDISKMSGDTIRFGATVKLEDEQNGEEKHYQIVGDQEADVASGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPI+RALIGKE GD + V APGG + YEIL V ++
Sbjct: 121 ISSPISRALIGKEEGDSVEVAAPGGARAYEILSVQYV 157
>gi|319403838|emb|CBI77424.1| transcription elongation factor GreA [Bartonella rochalimae ATCC
BAA-1498]
gi|319406848|emb|CBI80483.1| transcription elongation factor GreA [Bartonella sp. 1-1C]
Length = 157
Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 137/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQ+ER RII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERRRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVI++S +SGD+I FGAT++L+++++ ++K YQIVGDQEADV++G +S
Sbjct: 61 RINELEDCIARAEVINVSRLSGDKIKFGATINLLDEDTEERKVYQIVGDQEADVKTGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGTHNYEIIKVQYI 157
>gi|307944270|ref|ZP_07659611.1| transcription elongation factor GreA [Roseibium sp. TrichSKD4]
gi|307772616|gb|EFO31836.1| transcription elongation factor GreA [Roseibium sp. TrichSKD4]
Length = 157
Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 95/157 (60%), Positives = 126/157 (80%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ G+ +Q+EL+ R ERPRI++AI+EARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTDGYAMLQEELKQRTSVERPRIVEAIAEARAHGDLSENAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ ++RAEVID+S MSGD I FGATVSLV++++ ++K Y IVGD EADV+ +S
Sbjct: 61 RVAELEDKLSRAEVIDVSKMSGDVIKFGATVSLVDEDTEEEKKYMIVGDVEADVKQHKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK GD + V APGG + YEI V ++
Sbjct: 121 ISSPIARALIGKTEGDSVEVAAPGGARAYEITAVEYV 157
>gi|319405277|emb|CBI78891.1| transcription elongation factor GreA [Bartonella sp. AR 15-3]
Length = 157
Score = 197 bits (502), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/157 (64%), Positives = 137/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQ+ER RII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERRRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVI++S +SGD+I FGAT++L+++++ ++K YQIVGDQEADV++G +S
Sbjct: 61 RINELEDCIARAEVINVSRLSGDKIKFGATINLLDEDTEERKVYQIVGDQEADVKTGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157
>gi|118591047|ref|ZP_01548447.1| transcription elongation factor GreA [Stappia aggregata IAM 12614]
gi|118436569|gb|EAV43210.1| transcription elongation factor GreA [Stappia aggregata IAM 12614]
Length = 157
Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 92/157 (58%), Positives = 128/157 (81%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+TS G+ +Q EL+ R ERPRI+ AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKVPMTSAGYKMLQDELKERTSVERPRIVDAIAEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ELE+ ++RAE+ID+S +SGD + FGATV+L+++++ ++K Y IVGD E+DV+ VS
Sbjct: 61 RISELEDKLSRAEIIDVSKLSGDIVKFGATVTLIDEDTEEEKKYMIVGDVESDVKHNKVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK +GD + V APGG ++YEI+ V +I
Sbjct: 121 ISSPIARALIGKSIGDSVEVAAPGGARSYEIVDVRFI 157
>gi|90418035|ref|ZP_01225947.1| transcription elongation factor greA [Aurantimonas manganoxydans
SI85-9A1]
gi|90337707|gb|EAS51358.1| transcription elongation factor greA [Aurantimonas manganoxydans
SI85-9A1]
Length = 157
Score = 194 bits (494), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/156 (66%), Positives = 132/156 (84%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ G+D +++ELR RQQEERPRII AISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKVPMTNHGYDALREELRRRQQEERPRIIAAISEARAHGDLSENAEYHAAKESQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ELE++ RAEVID++ MSG I FGATV L+++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61 RISELEDLTARAEVIDVTKMSGATIKFGATVKLIDEDTEEEKTYQIVGDQEADVKKGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIARALIGK GD I V APGG ++YEIL+V W
Sbjct: 121 ISSPIARALIGKTDGDTIEVAAPGGARSYEILEVRW 156
>gi|154246690|ref|YP_001417648.1| transcription elongation factor GreA [Xanthobacter autotrophicus
Py2]
gi|154160775|gb|ABS67991.1| transcription elongation factor GreA [Xanthobacter autotrophicus
Py2]
Length = 168
Score = 194 bits (493), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/156 (59%), Positives = 128/156 (82%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T+ G+ + QEL+ RQQ ERPRII AISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 12 MEKIPMTAAGYAALAQELKQRQQVERPRIISAISEARAHGDLSENAEYHAAKEQQSLNEG 71
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+A+LE+ ++RAEVID+S +SGD + FGATV+LV++++ ++K +QIVGD EAD ++G +S
Sbjct: 72 RVADLEDKLSRAEVIDVSKLSGDIVKFGATVTLVDEDTEEEKVWQIVGDSEADAKAGRIS 131
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSP+ARALIGK+ G + V P G +++EI+ V W
Sbjct: 132 ISSPVARALIGKKKGASVEVVTPKGARSFEIVAVRW 167
>gi|254470230|ref|ZP_05083634.1| transcription elongation factor GreA [Pseudovibrio sp. JE062]
gi|211960541|gb|EEA95737.1| transcription elongation factor GreA [Pseudovibrio sp. JE062]
Length = 157
Score = 193 bits (491), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 93/156 (59%), Positives = 125/156 (80%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G+ + +EL+ R ERPRII AISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKVPMTPEGYAMLTEELKHRTTGERPRIIAAISEARAHGDLSENAEYHAAKEQQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE ++ AEVID++ +SGD + FGATVSLV++++ ++K Y IVGD EADV+ G +S
Sbjct: 61 RINELEGLLGLAEVIDLTKLSGDTVKFGATVSLVDEDTEEEKKYMIVGDVEADVKRGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIARALIGK +GD + V APGG + YEI++V +
Sbjct: 121 ISSPIARALIGKSVGDSVEVAAPGGARGYEIVEVEF 156
>gi|209884272|ref|YP_002288129.1| transcription elongation factor GreA [Oligotropha carboxidovorans
OM5]
gi|209872468|gb|ACI92264.1| transcription elongation factor GreA [Oligotropha carboxidovorans
OM5]
Length = 178
Score = 193 bits (490), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 92/157 (58%), Positives = 125/157 (79%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T+ G +++EL+ RQ ERPRII+AI+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 21 MVEKLPMTAAGHLALEEELKQRQAVERPRIIEAIAEARSHGDLSENAEYHAAKEAQSHNE 80
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ I RA++ID+S +SGD I FGATV+L+++++ K YQIVG+ EAD + G +
Sbjct: 81 GRIAELEDKIARADIIDVSKLSGDTIKFGATVTLIDEDTEKKAVYQIVGESEADAKKGRI 140
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK+ G + V APGG K YEI +V W
Sbjct: 141 SITSPLARALIGKKKGTSVEVVAPGGAKAYEIAKVDW 177
>gi|27382489|ref|NP_774018.1| transcription elongation factor GreA [Bradyrhizobium japonicum USDA
110]
gi|81734738|sp|Q89DR1|GREA_BRAJA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|27355661|dbj|BAC52643.1| transcription elongation factor [Bradyrhizobium japonicum USDA 110]
Length = 157
Score = 193 bits (490), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 92/156 (58%), Positives = 125/156 (80%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+TS GF + +EL+ RQ E+RPRII+ I+EAR++GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTSAGFAALGEELKKRQSEDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ + RA++IDIS +SGD I FGATV+LV++++ K +QIVG+ EAD + G +S
Sbjct: 61 RIAELEDKLARADIIDISKLSGDTIKFGATVTLVDEDTEKKAVWQIVGEVEADAKKGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+ARALIGK+ G + VNAPGG K YEI +V W
Sbjct: 121 ITSPLARALIGKKKGSTVEVNAPGGAKAYEITKVEW 156
>gi|154252759|ref|YP_001413583.1| transcription elongation factor GreA [Parvibaculum lavamentivorans
DS-1]
gi|154156709|gb|ABS63926.1| transcription elongation factor GreA [Parvibaculum lavamentivorans
DS-1]
Length = 152
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 93/151 (61%), Positives = 125/151 (82%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+TS+G+ +++E+R+ + ERPRIIKAISEARA+GDLSENAEY AAKE Q LNE R+AEL
Sbjct: 1 MTSEGYKSLEEEIRFLKSVERPRIIKAISEARAHGDLSENAEYHAAKEQQGLNESRVAEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ I+RAEVID+S +SGD + FGATV LV++++ ++ +YQIVG+ EADV+ G VSI+SPI
Sbjct: 61 EDKISRAEVIDVSKLSGDTVMFGATVKLVDEDTEEEVSYQIVGEIEADVKQGRVSITSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK +GD + V PGG K+YEIL++ +
Sbjct: 121 ARALIGKSVGDSVEVVTPGGGKSYEILKISF 151
>gi|217976860|ref|YP_002361007.1| transcription elongation factor GreA [Methylocella silvestris BL2]
gi|217502236|gb|ACK49645.1| transcription elongation factor GreA [Methylocella silvestris BL2]
Length = 152
Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 90/151 (59%), Positives = 125/151 (82%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G ++ EL+ RQQ ERPRII+AI+EAR++GDLSENAEY +AKE Q+LNEGR+AEL
Sbjct: 1 MTAAGHLALEDELKRRQQIERPRIIQAIAEARSHGDLSENAEYHSAKEAQSLNEGRIAEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ ++R+EVID+S +SG + FGATV+L+++++ +K YQIVG+ EADV+SG VSI+SP
Sbjct: 61 EDKLSRSEVIDVSKLSGATVMFGATVTLIDEDTEAEKTYQIVGETEADVKSGRVSITSPT 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK++GD + V PGG K+YEIL+V +
Sbjct: 121 ARALIGKKVGDTVEVTTPGGGKSYEILKVSF 151
>gi|299132015|ref|ZP_07025210.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2]
gi|298592152|gb|EFI52352.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2]
Length = 158
Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/157 (57%), Positives = 124/157 (78%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T+ G ++ EL+ RQ ERPRII+AI+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKLPITAAGLVALEDELKQRQSVERPRIIEAIAEARSHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA++ID+S +SGD I FGATV+L+++++ K YQIVG+ EAD + G +
Sbjct: 61 GRIAELEDKLARADIIDVSKLSGDTIKFGATVTLIDEDTEKKVVYQIVGETEADAKKGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK+ G + V APGG K YE+ +V W
Sbjct: 121 SITSPLARALIGKKKGTSVEVVAPGGAKAYEVAKVDW 157
>gi|328542878|ref|YP_004302987.1| transcription elongation factor GreA [polymorphum gilvum
SL003B-26A1]
gi|326412624|gb|ADZ69687.1| transcription elongation factor GreA [Polymorphum gilvum
SL003B-26A1]
Length = 152
Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 90/152 (59%), Positives = 123/152 (80%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G+ +Q EL+ R ERPRI++AISEARA+GDLSENAEY AAKE Q+ NEGR+AEL
Sbjct: 1 MTAAGYAMLQAELKERTSVERPRIVEAISEARAHGDLSENAEYHAAKEAQSHNEGRIAEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ + RAE+ID+S +SGD + FGATV+L+++++ ++K Y IVGD EADV+ G +SISSPI
Sbjct: 61 EDKLGRAEIIDVSKLSGDTVKFGATVTLIDEDTEEEKQYMIVGDVEADVKQGKISISSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARALIGK +GD + V+APGG ++YEI + +I
Sbjct: 121 ARALIGKSVGDSVEVSAPGGSRSYEIEDIKFI 152
>gi|148258011|ref|YP_001242596.1| transcription elongation factor GreA [Bradyrhizobium sp. BTAi1]
gi|229485760|sp|A5ER96|GREA_BRASB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|146410184|gb|ABQ38690.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Bradyrhizobium sp. BTAi1]
Length = 158
Score = 188 bits (478), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 126/157 (80%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+TS G+ ++ EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTSGGYAALENELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA+VID++ +SG+ I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 61 GRIAELEDKLARADVIDVTKLSGETIKFGATVTLIDEDTEKKTVWQIVGEVEADAKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK++G + V APGG K+YEI +V W
Sbjct: 121 SITSPLARALIGKKMGTTVEVMAPGGAKSYEIAKVEW 157
>gi|312114890|ref|YP_004012486.1| transcription elongation factor GreA [Rhodomicrobium vannielii ATCC
17100]
gi|311220019|gb|ADP71387.1| transcription elongation factor GreA [Rhodomicrobium vannielii ATCC
17100]
Length = 159
Score = 187 bits (476), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/158 (57%), Positives = 127/158 (80%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K+P+T++G ++ ELR + ER RIIKAI+EAR++GDLSENAEY AAKE Q +NE
Sbjct: 1 MSEKVPMTAQGHAALEAELRILRSVERQRIIKAIAEARSHGDLSENAEYHAAKEAQGMNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE+ ++RAEVIDIS +SG+ + FGATV+LV++++ ++ YQIVGD EADV++G V
Sbjct: 61 AKVADLEDKLSRAEVIDISKLSGETVKFGATVTLVDEDTEEEVKYQIVGDLEADVRNGKV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SPIARALIGK+ GD + VN P G K+YEIL+V ++
Sbjct: 121 SIGSPIARALIGKKAGDSVEVNTPRGAKSYEILKVEFL 158
>gi|146338409|ref|YP_001203457.1| transcription elongation factor GreA [Bradyrhizobium sp. ORS278]
gi|146191215|emb|CAL75220.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Bradyrhizobium sp. ORS278]
Length = 188
Score = 187 bits (475), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 126/157 (80%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T+ G+ ++ EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 31 MVEKVPMTAGGYAALENELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 90
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA++ID++ +SGD I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 91 GRIAELEDKLARADIIDVAKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEVEADAKKGKI 150
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK++G + V APGG K+YEI +V W
Sbjct: 151 SITSPLARALIGKKMGTTVEVMAPGGAKSYEIAKVEW 187
>gi|162149110|ref|YP_001603571.1| transcription elongation factor GreA [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787687|emb|CAP57283.1| Transcription elongation factor greA [Gluconacetobacter
diazotrophicus PAl 5]
Length = 157
Score = 187 bits (474), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 124/154 (80%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T KG ++++ELR + EERP +I+AI+EAR++GDLSENAEY AA++ Q+ EGR+
Sbjct: 3 KFPMTGKGLQRLEEELRKLKSEERPAVIRAIAEARSHGDLSENAEYHAARDRQSFIEGRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE+II+ AEVID +++SGD++ FGA VSLV++ + + YQIVG EAD++ GL+S+S
Sbjct: 63 LELEDIISSAEVIDPASLSGDQVKFGAQVSLVDEETDKEATYQIVGVHEADIKQGLLSVS 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A++LIGK +GD +SV APGG++TYEIL V +
Sbjct: 123 SPLAKSLIGKRIGDSVSVPAPGGDRTYEILAVTY 156
>gi|144897958|emb|CAM74822.1| Prokaryotic transcription elongation factor GreA [Magnetospirillum
gryphiswaldense MSR-1]
Length = 157
Score = 186 bits (473), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 122/157 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ ELR + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKIPMTPAGLTTLEDELRNLKAVERPAVIKAIAEAREHGDLSENAEYHAARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE++I+RA+VIDI+ MSGD++ FGATV+L +++S D+ Y IVG EAD++SG +S
Sbjct: 61 RVAELEDVISRAQVIDIALMSGDQVRFGATVTLADEDSDDEVVYTIVGAHEADIKSGRMS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SP+ARALIGK +GD + V PGG K+YE++ V ++
Sbjct: 121 VHSPLARALIGKHIGDTVEVTTPGGSKSYEVVDVRFV 157
>gi|91975935|ref|YP_568594.1| transcription elongation factor GreA [Rhodopseudomonas palustris
BisB5]
gi|91682391|gb|ABE38693.1| transcription elongation factor GreA [Rhodopseudomonas palustris
BisB5]
Length = 165
Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 122/157 (77%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 8 MVEKVPMTAGGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 67
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA++IDIS +SGD I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 68 GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGESEADAKKGKI 127
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK G + V APGG K YEI +V W
Sbjct: 128 SITSPLARALIGKTQGTSVEVVAPGGAKAYEIAKVEW 164
>gi|300023325|ref|YP_003755936.1| transcription elongation factor GreA [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525146|gb|ADJ23615.1| transcription elongation factor GreA [Hyphomicrobium denitrificans
ATCC 51888]
Length = 157
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/156 (58%), Positives = 120/156 (76%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++++P+T +G+ ++ EL+ + ERPRII AISEARA+GDLSENAEY AAKE Q LNE
Sbjct: 1 MERVPMTIEGYKNLETELQRLKAVERPRIIAAISEARAHGDLSENAEYHAAKEQQGLNEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ I RAEVID S +SGD + FGATV+L +++S DK Y IVGD EAD+++G +S
Sbjct: 61 RVAELEDKINRAEVIDTSKLSGDTVKFGATVTLQDEDSEDKVTYTIVGDTEADLKNGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIARALIGK G+ + V P G +T E+L+V W
Sbjct: 121 ISSPIARALIGKTNGESVDVTTPKGTRTLEVLKVSW 156
>gi|85715963|ref|ZP_01046940.1| transcription elongation factor GreA [Nitrobacter sp. Nb-311A]
gi|85697161|gb|EAQ35042.1| transcription elongation factor GreA [Nitrobacter sp. Nb-311A]
Length = 158
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/158 (56%), Positives = 122/158 (77%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDK+P+T G + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVDKVPMTRGGHAALADELKKRQSVDRPRIIEQIAEARSHGDLSENAEYHAAKEEQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA++ID+S +SGD I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 61 GRIAELEDKLARADIIDVSKLSGDTIMFGATVTLIDEDTDKKAVWQIVGEAEADAKQGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI+SP+ARALIGK+ G + V APGG K YEI +V W+
Sbjct: 121 SITSPLARALIGKKKGSSVEVVAPGGAKAYEIAKVEWL 158
>gi|197106054|ref|YP_002131431.1| transcription elongation factor GreA [Phenylobacterium zucineum
HLK1]
gi|238690169|sp|B4RH54|GREA_PHEZH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|196479474|gb|ACG79002.1| transcription elongation factor GreA [Phenylobacterium zucineum
HLK1]
Length = 157
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 127/157 (80%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G+ + +EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MEKVPMTAEGYKALDEELKRLKTVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AE+E+ + RA+VID+S +SG+++ FGATVSL+++++ ++ YQIVG+ EADV++G VS
Sbjct: 61 QIAEIEDKMARAQVIDVSKLSGEQVKFGATVSLIDEDTEEEARYQIVGEHEADVKAGRVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++SPIARA+IGKE GD++ VN PGG K YEI +V W+
Sbjct: 121 VTSPIARAIIGKETGDVVEVNTPGGVKAYEITKVEWV 157
>gi|86748640|ref|YP_485136.1| transcription elongation factor GreA [Rhodopseudomonas palustris
HaA2]
gi|86571668|gb|ABD06225.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
HaA2]
Length = 174
Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 122/157 (77%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 17 MVEKVPMTAGGYAALSDELKKRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 76
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA++IDIS +SGD I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 77 GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGENEADAKKGKI 136
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK G + V APGG K YEI +V W
Sbjct: 137 SITSPLARALIGKTKGTSVEVVAPGGAKAYEIAKVEW 173
>gi|330993911|ref|ZP_08317841.1| Transcription elongation factor greA [Gluconacetobacter sp. SXCC-1]
gi|329758857|gb|EGG75371.1| Transcription elongation factor greA [Gluconacetobacter sp. SXCC-1]
Length = 157
Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 123/156 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T G +++ ELR + EERP II+AI+EAR++GDLSENAEY AA+E Q+ EG
Sbjct: 1 MQKFPMTGPGLQRLEDELRKLKSEERPAIIRAIAEARSHGDLSENAEYHAARERQSFTEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ AEVID +++SGD++ FGA V LV++ + + +YQIVG EAD++ GL+S
Sbjct: 61 RIQELEEIVSSAEVIDPASLSGDQVKFGARVKLVDEETDREASYQIVGVYEADIKQGLLS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSP+A++LIGK +GD +SV APGG++TYEIL+V +
Sbjct: 121 ISSPLAKSLIGKSIGDTVSVPAPGGDRTYEILEVTY 156
>gi|39937132|ref|NP_949408.1| transcription elongation factor GreA [Rhodopseudomonas palustris
CGA009]
gi|192292967|ref|YP_001993572.1| transcription elongation factor GreA [Rhodopseudomonas palustris
TIE-1]
gi|81619506|sp|Q6N2H8|GREA_RHOPA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|229485904|sp|B3QJZ1|GREA_RHOPT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|39650990|emb|CAE29513.1| transcriptional elongation factor greA [Rhodopseudomonas palustris
CGA009]
gi|192286716|gb|ACF03097.1| transcription elongation factor GreA [Rhodopseudomonas palustris
TIE-1]
Length = 158
Score = 185 bits (469), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 122/157 (77%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+KIP+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKIPMTASGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE+ + RA++ID+S +SGD + FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 61 GRINELEDKLARADIIDVSKLSGDTVKFGATVTLIDEDTEKKAVWQIVGEAEADAKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK+ G + V APGG K YEI +V W
Sbjct: 121 SITSPLARALIGKKAGSSVEVVAPGGAKAYEIAKVEW 157
>gi|90425319|ref|YP_533689.1| transcription elongation factor GreA [Rhodopseudomonas palustris
BisB18]
gi|123394824|sp|Q20ZR6|GREA_RHOPB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|90107333|gb|ABD89370.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
BisB18]
Length = 158
Score = 184 bits (468), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 124/157 (78%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++K+P+T+ G+ ++ EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1 MIEKVPMTAGGYAALEVELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA++IDIS +SGD I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 61 GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEPEADAKKGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK+ G + V APGG K YEI +V W
Sbjct: 121 SITSPLARALIGKKKGASVEVVAPGGAKAYEITKVEW 157
>gi|296116673|ref|ZP_06835283.1| transcription elongation factor GreA [Gluconacetobacter hansenii
ATCC 23769]
gi|295976885|gb|EFG83653.1| transcription elongation factor GreA [Gluconacetobacter hansenii
ATCC 23769]
Length = 157
Score = 184 bits (467), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 85/154 (55%), Positives = 120/154 (77%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T G +++ ELR + EERP II+AI+EAR++GDLSENAEY AA+E Q+ EGR+
Sbjct: 3 KFPMTGPGLQRLEDELRKLKSEERPAIIRAIAEARSHGDLSENAEYHAARERQSFTEGRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE I++ AEVID +++SGD++ FGA V LV++ + + YQIVG EAD++ GL+S+S
Sbjct: 63 LELEEIVSSAEVIDPASLSGDQVKFGARVHLVDEETDKEATYQIVGVYEADIKQGLLSVS 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A++LIGK +GD +SV APGG++TYEIL V +
Sbjct: 123 SPLAKSLIGKSVGDTVSVPAPGGDRTYEILAVTY 156
>gi|316935637|ref|YP_004110619.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
DX-1]
gi|315603351|gb|ADU45886.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
DX-1]
Length = 158
Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/157 (55%), Positives = 122/157 (77%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+KIP+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKIPMTASGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE+ + RA++ID+S +SGD + FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 61 GRINELEDKLARADIIDVSKLSGDTVKFGATVTLIDEDTEKKAVWQIVGEAEADAKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK+ G + V APGG K YEI +V W
Sbjct: 121 SITSPLARALIGKKAGSSVEVVAPGGAKAYEIEKVEW 157
>gi|75676634|ref|YP_319055.1| transcription elongation factor GreA [Nitrobacter winogradskyi
Nb-255]
gi|123773178|sp|Q3SPT8|GREA_NITWN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|74421504|gb|ABA05703.1| transcription elongation factor GreA [Nitrobacter winogradskyi
Nb-255]
Length = 158
Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 89/157 (56%), Positives = 121/157 (77%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T G + EL+ RQ +RPRII+ I+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTRGGHAALADELKKRQSVDRPRIIEQIAEARAHGDLSENAEYHAAKEEQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA++ID+S +SGD I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 61 GRIAELEDKLARADIIDVSKLSGDTIKFGATVTLIDEDTDKKAVWQIVGEAEADAKQGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK+ G + V APGG K YEI +V W
Sbjct: 121 SITSPLARALIGKKKGSSVEVVAPGGAKAYEIAKVEW 157
>gi|16127080|ref|NP_421644.1| transcription elongation factor GreA [Caulobacter crescentus CB15]
gi|221235877|ref|YP_002518314.1| transcription elongation factor GreA [Caulobacter crescentus
NA1000]
gi|25453007|sp|Q9A4I3|GREA_CAUCR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799552|sp|B8H1V7|GREA_CAUCN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|13424460|gb|AAK24812.1| transcription elongation factor GreA [Caulobacter crescentus CB15]
gi|220965050|gb|ACL96406.1| transcription elongation factor greA [Caulobacter crescentus
NA1000]
Length = 157
Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 126/157 (80%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G+ + +EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MEKVPMTVAGYQTLDEELKRLKTVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AE+E+ I RA+VID++ +SG ++ FGATVS+V++++ ++ YQIVGD EADV+SG +S
Sbjct: 61 QIAEIEDKIARAQVIDVTKLSGKQVKFGATVSVVDEDTEEEARYQIVGDHEADVKSGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SSP++RA+IGKE+G+++ VN PGG K YEIL+V W+
Sbjct: 121 LSSPLSRAMIGKEVGEVVEVNTPGGVKAYEILKVEWL 157
>gi|92118375|ref|YP_578104.1| transcription elongation factor GreA [Nitrobacter hamburgensis X14]
gi|123386993|sp|Q1QJF3|GREA_NITHX RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|91801269|gb|ABE63644.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14]
Length = 158
Score = 183 bits (465), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 121/157 (77%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++K+P+T G + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1 MIEKVPMTRGGHAALADELKKRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEDQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RAE+ID+S +SGD I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 61 GRIAELEDKLARAEIIDVSKLSGDTIKFGATVTLIDEDTDKKAVWQIVGEAEADAKKGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK+ G + V APGG K YEI +V W
Sbjct: 121 SITSPLARALIGKKKGASVEVVAPGGAKAYEITKVEW 157
>gi|254418720|ref|ZP_05032444.1| transcription elongation factor GreA subfamily [Brevundimonas sp.
BAL3]
gi|196184897|gb|EDX79873.1| transcription elongation factor GreA subfamily [Brevundimonas sp.
BAL3]
Length = 157
Score = 183 bits (464), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 124/156 (79%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G+ + +L+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG
Sbjct: 1 MEKVPMTAEGYRVLDDQLKQLKSVERPSVIAAISEAREHGDLSENAEYHAAKERQGWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AE+E+ I+RA+VID+S +SG ++ FGATV++V++++ D+ YQIVG+ EADV+ G VS
Sbjct: 61 QIAEIEDKISRAQVIDVSKLSGSQVKFGATVTVVDEDTEDEARYQIVGEHEADVKKGKVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIARA+I KE+GD++ VN PGG K YEIL+V W
Sbjct: 121 IASPIARAMISKEVGDVVEVNTPGGVKAYEILKVEW 156
>gi|115525956|ref|YP_782867.1| transcription elongation factor GreA [Rhodopseudomonas palustris
BisA53]
gi|122295116|sp|Q07JJ7|GREA_RHOP5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|115519903|gb|ABJ07887.1| transcription elongation factor GreA [Rhodopseudomonas palustris
BisA53]
Length = 160
Score = 182 bits (463), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/156 (56%), Positives = 123/156 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ G+ +Q EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTANGYAALQVELKQRQTVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+A+LE+ + RA+VIDI+ +SGD I FGATV+LV++++ K +QIVG+ EAD + G +S
Sbjct: 61 RIADLEDKLARADVIDITKLSGDTIMFGATVTLVDEDTEKKAVWQIVGEPEADAKKGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+ARALIGK+ G + V APGG K YEI +V W
Sbjct: 121 ITSPLARALIGKKKGASVEVMAPGGAKAYEITKVEW 156
>gi|167648248|ref|YP_001685911.1| transcription elongation factor GreA [Caulobacter sp. K31]
gi|189042240|sp|B0SZ84|GREA_CAUSK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|167350678|gb|ABZ73413.1| transcription elongation factor GreA [Caulobacter sp. K31]
Length = 157
Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 124/157 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ G+ + +EL+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG
Sbjct: 1 MEKVPMTAGGYQTLDEELKRLKTIERPAVIAAISEARQHGDLSENAEYHAAKERQGWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AE+E+ I RA+VID+S +SG ++ FGATVS+V++++ ++ YQIVGD EADV+ G +S
Sbjct: 61 RIAEIEDKIARAQVIDVSKLSGKQVKFGATVSVVDEDTEEESRYQIVGDHEADVKEGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SSP++RA+IGKE+G+++ V PGG K YEIL+V W+
Sbjct: 121 LSSPLSRAMIGKEVGEVVEVYTPGGVKAYEILKVEWV 157
>gi|83309802|ref|YP_420066.1| transcription elongation factor GreA [Magnetospirillum magneticum
AMB-1]
gi|82944643|dbj|BAE49507.1| Transcription elongation factor [Magnetospirillum magneticum AMB-1]
Length = 157
Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 124/156 (79%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++++ELR + ER +I+AI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKIPMTPAGLAQLEEELRTLKYVERQAVIRAIAEAREHGDLSENAEYHAARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ELE+II+RA+VIDI+++SGD++ FGATV+L ++++ D+ Y IVG EAD++SG +S
Sbjct: 61 RVSELEDIISRAQVIDIASLSGDQVRFGATVTLADEDTDDEVVYTIVGAHEADIKSGRMS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+ARALIGK LGD + V APGG K+YEI+ V +
Sbjct: 121 VHSPLARALIGKHLGDTVEVTAPGGSKSYEIVDVRF 156
>gi|209545146|ref|YP_002277375.1| transcription elongation factor GreA [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532823|gb|ACI52760.1| transcription elongation factor GreA [Gluconacetobacter
diazotrophicus PAl 5]
Length = 152
Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/151 (55%), Positives = 122/151 (80%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG ++++ELR + EERP +I+AI+EAR++GDLSENAEY AA++ Q+ EGR+ EL
Sbjct: 1 MTGKGLQRLEEELRKLKSEERPAVIRAIAEARSHGDLSENAEYHAARDRQSFIEGRILEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+II+ AEVID +++SGD++ FGA VSLV++ + + YQIVG EAD++ GL+S+SSP+
Sbjct: 61 EDIISSAEVIDPASLSGDQVKFGAQVSLVDEETDKEATYQIVGVHEADIKQGLLSVSSPL 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A++LIGK +GD +SV APGG++TYEIL V +
Sbjct: 121 AKSLIGKRIGDSVSVPAPGGDRTYEILAVTY 151
>gi|58038799|ref|YP_190763.1| transcription elongation factor GreA [Gluconobacter oxydans 621H]
gi|58001213|gb|AAW60107.1| Transcription elongation factor [Gluconobacter oxydans 621H]
Length = 157
Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/154 (55%), Positives = 122/154 (79%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
KIP+T+KG +++ ELR + +RP +I+AI+EAR +GDLSENAEY AA++ Q+ EGR+
Sbjct: 3 KIPMTAKGQQRLEDELRTLKSVDRPAVIRAIAEAREHGDLSENAEYHAARDRQSFIEGRV 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE II+ AEVID ST++G R+ FGA + LV++ + + YQIVG EAD++ GL+SIS
Sbjct: 63 LELEGIISNAEVIDPSTLTGTRVRFGAHIELVDEETDKEALYQIVGVHEADIKQGLISIS 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A+ALIGK++GD +SV APGG++TYEIL+V +
Sbjct: 123 SPLAKALIGKDVGDSVSVPAPGGDRTYEILKVTY 156
>gi|209965306|ref|YP_002298221.1| transcription elongation factor GreA [Rhodospirillum centenum SW]
gi|209958772|gb|ACI99408.1| transcription elongation factor GreA [Rhodospirillum centenum SW]
Length = 157
Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 123/156 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++GF ++Q+EL+ + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKVPMTARGFTRLQEELKQLKSVERPAVIKAIAEAREHGDLSENAEYHAARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I+RAEVID + +SG I FGATV+L ++++ ++ YQIVG E+D+++G +S
Sbjct: 61 RVMELEDKISRAEVIDPTKLSGSAIKFGATVTLADEDTDEEVTYQIVGQDESDIKAGFIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+ARALIGK++GD + V PGG K+YEI + +
Sbjct: 121 ITSPLARALIGKQVGDSVEVTTPGGSKSYEITGIQF 156
>gi|148259921|ref|YP_001234048.1| transcription elongation factor GreA [Acidiphilium cryptum JF-5]
gi|326403125|ref|YP_004283206.1| transcription elongation factor GreA [Acidiphilium multivorum
AIU301]
gi|166200647|sp|A5FWZ7|GREA_ACICJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|146401602|gb|ABQ30129.1| transcription elongation factor GreA [Acidiphilium cryptum JF-5]
gi|325049986|dbj|BAJ80324.1| transcription elongation factor GreA [Acidiphilium multivorum
AIU301]
Length = 157
Score = 181 bits (458), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/154 (55%), Positives = 119/154 (77%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T G ++ ELR + EERP II+AI+EAR++GDLSENAEY +A+E Q+ EGR+
Sbjct: 3 KFPMTGPGLQNLEAELRHLKSEERPAIIRAIAEARSHGDLSENAEYHSARERQSFIEGRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AELE II+ AEVID ST+SGD + FGA V L+++ S + YQIVG EAD+++G +S++
Sbjct: 63 AELEEIISAAEVIDPSTLSGDTVKFGAHVELIDEESDKEVTYQIVGVHEADIKAGRISVT 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A++LIGK+ GD +SV APGG+++YEIL V +
Sbjct: 123 SPLAKSLIGKKPGDTVSVPAPGGDRSYEILAVRF 156
>gi|89070192|ref|ZP_01157520.1| transcription elongation factor GreA [Oceanicola granulosus
HTCC2516]
gi|89044208|gb|EAR50359.1| transcription elongation factor GreA [Oceanicola granulosus
HTCC2516]
Length = 156
Score = 180 bits (457), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 88/157 (56%), Positives = 122/157 (77%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T GFDK+ EL+ + ERP II+AISEAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MDKIPLTRAGFDKLDAELKHLKSVERPAIIRAISEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ AEVID + MSG I FGATV LV++++ ++K+YQIVG+ EAD++ G ++
Sbjct: 61 RIKELEGVISLAEVIDPTRMSG-AIKFGATVELVDEDTDEEKSYQIVGEYEADIERGKLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SP+ARALIGKE GD + V PGG+K YE+++V ++
Sbjct: 120 MKSPLARALIGKEEGDSVEVKTPGGDKAYEVVKVSYV 156
>gi|114328953|ref|YP_746110.1| transcription elongation factor GreA [Granulibacter bethesdensis
CGDNIH1]
gi|114317127|gb|ABI63187.1| transcription elongation factor greA [Granulibacter bethesdensis
CGDNIH1]
Length = 157
Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 121/155 (78%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T+ G +++ ELR + ERP +I+AI+EAR++GDLSENAEY AA+E Q+ EGR+
Sbjct: 3 KFPMTAGGLQRLEDELRQLKSVERPAVIRAIAEARSHGDLSENAEYHAARERQSFIEGRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE I++ AEVID ST+SGD++ FGA V +V++ + + +YQIVG EAD++ GL+S+S
Sbjct: 63 EELEVIVSAAEVIDPSTLSGDQVKFGAHVQIVDEETDKEASYQIVGLHEADIKQGLLSVS 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+A+ALIGK+ GD ISV APGG+++YEIL V +
Sbjct: 123 SPLAKALIGKKPGDTISVPAPGGDRSYEILSVRFF 157
>gi|83859439|ref|ZP_00952960.1| transcription elongation factor GreA [Oceanicaulis alexandrii
HTCC2633]
gi|83852886|gb|EAP90739.1| transcription elongation factor GreA [Oceanicaulis alexandrii
HTCC2633]
Length = 152
Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 118/151 (78%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G + +EL+ + ERP +I AISEAR +GDLSENAEY AAKE Q EGR+ EL
Sbjct: 1 MTAEGHKALDEELKHLKSVERPAVIAAISEAREHGDLSENAEYHAAKERQGWIEGRVQEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ I RA+VID+S MSG ++ FGATV++V++++ + Y+IVGD EADV+SG +S+SSPI
Sbjct: 61 EDKIARAQVIDVSKMSGTQVKFGATVTVVDEDTDQESTYKIVGDDEADVKSGKISLSSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARA+I KE GD++ VNAPGG K+YEIL+V W
Sbjct: 121 ARAMINKEEGDVVEVNAPGGVKSYEILKVEW 151
>gi|329890723|ref|ZP_08269066.1| transcription elongation factor greA [Brevundimonas diminuta ATCC
11568]
gi|328846024|gb|EGF95588.1| transcription elongation factor greA [Brevundimonas diminuta ATCC
11568]
Length = 157
Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 123/156 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G+ + +L+ + ERP +I AI+EAR +GDLSENAEY AAKE Q EG
Sbjct: 1 MEKVPMTAEGYRSLDDQLKQLKSVERPSVIAAIAEAREHGDLSENAEYHAAKERQGWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+AE+E+ ++RA+VID+S +SGD++ FGATV+ V++++ ++ YQIVG+ EADV+ G +S
Sbjct: 61 SIAEIEDKLSRAQVIDVSKLSGDQVKFGATVTFVDEDTEEEGVYQIVGEHEADVKLGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIARALI KE+GD++ VN PGG K YEIL+V W
Sbjct: 121 IASPIARALISKEVGDVVEVNTPGGVKAYEILKVEW 156
>gi|258542082|ref|YP_003187515.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-01]
gi|256633160|dbj|BAH99135.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-01]
gi|256636217|dbj|BAI02186.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-03]
gi|256639272|dbj|BAI05234.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-07]
gi|256642326|dbj|BAI08281.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-22]
gi|256645381|dbj|BAI11329.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-26]
gi|256648436|dbj|BAI14377.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-32]
gi|256651489|dbj|BAI17423.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654480|dbj|BAI20407.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-12]
Length = 157
Score = 179 bits (455), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 122/157 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T KG +++ ELR + EERP +I+AI+EAR++GDLSENAEY AA+E Q+ EG
Sbjct: 1 MQKTPMTGKGLLQLEDELRKLKSEERPAVIRAIAEARSHGDLSENAEYHAARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ AEVI+ +++SG ++ FGATV LV++++ + YQIVG EAD++ +S
Sbjct: 61 RILELEELISTAEVIEPTSLSGKQVKFGATVCLVDEDTDKEITYQIVGLHEADIKQHKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSP+A+ALIGKE GD +SV APGG++TYEIL V +I
Sbjct: 121 ISSPLAKALIGKEEGDTVSVPAPGGDRTYEILSVKFI 157
>gi|329848667|ref|ZP_08263695.1| transcription elongation factor greA [Asticcacaulis biprosthecum
C19]
gi|328843730|gb|EGF93299.1| transcription elongation factor greA [Asticcacaulis biprosthecum
C19]
Length = 157
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 124/157 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G+ + EL+ + ERP +I AISEAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MEKVPMTVGGYKSLDDELKRLKSIERPAVIAAISEARSHGDLSENAEYHAAKERQGWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++A++E+ I+RA+VID++ +SG I FGATV++V++++ ++ YQ+VGD EADV+SG +S
Sbjct: 61 QIADIEDKISRAQVIDVTKLSGQNIKFGATVTVVDEDTEEEGRYQVVGDHEADVRSGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SSP++RA+IGKE+GD++ V PGG K YEIL+V WI
Sbjct: 121 LSSPLSRAMIGKEVGDVVEVVTPGGVKAYEILKVEWI 157
>gi|329114165|ref|ZP_08242927.1| Transcription elongation factor GreA [Acetobacter pomorum DM001]
gi|326696241|gb|EGE47920.1| Transcription elongation factor GreA [Acetobacter pomorum DM001]
Length = 157
Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 122/157 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T KG +++ ELR + EERP +I+AI+EAR++GDLSENAEY AA+E Q+ EG
Sbjct: 1 MQKTPMTGKGLLQLEDELRKLKAEERPAVIRAIAEARSHGDLSENAEYHAARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ AEVI+ +++SG ++ FGATV LV++++ + YQIVG EAD++ +S
Sbjct: 61 RILELEELISTAEVIEPTSLSGKQVKFGATVCLVDEDTDKEITYQIVGLHEADIKQHRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSP+A+ALIGKE GD +SV APGG++TYEIL V +I
Sbjct: 121 ISSPLAKALIGKEEGDTVSVPAPGGDRTYEILSVKFI 157
>gi|296532781|ref|ZP_06895460.1| transcription elongation factor GreA [Roseomonas cervicalis ATCC
49957]
gi|296266889|gb|EFH12835.1| transcription elongation factor GreA [Roseomonas cervicalis ATCC
49957]
Length = 163
Score = 178 bits (452), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 121/156 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V K P+T++G +++ ELR + EERP +I+AI+EARA+GDLSENAEY AA+E Q+ EG
Sbjct: 7 VQKFPMTAEGLARLEDELRQLKAEERPAVIRAIAEARAHGDLSENAEYHAARERQSFIEG 66
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+I+ EVID + +SGD++ FGA V+++++ S ++K Y+IVG EAD + G +S
Sbjct: 67 RIAELESIVPSVEVIDTTKLSGDQVRFGAYVTIIDEESEEEKTYRIVGAHEADTKLGSIS 126
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSP+A+AL+GK+LGD + V APGG + YEI +V +
Sbjct: 127 ISSPLAKALLGKKLGDSVEVPAPGGARAYEIAKVRF 162
>gi|83594219|ref|YP_427971.1| transcription elongation factor GreA [Rhodospirillum rubrum ATCC
11170]
gi|123766955|sp|Q2RQB1|GREA_RHORT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|83577133|gb|ABC23684.1| GreA/GreB family elongation factor [Rhodospirillum rubrum ATCC
11170]
Length = 157
Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 121/156 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G +++ EL+ + +RP +I+AISEAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKIPMTPDGLARLEAELKSLKSVDRPAVIRAISEARDHGDLSENAEYHAARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++ +RAEVIDIS +SGD + FGATVS+++++S ++ YQIVG EAD+++G +S
Sbjct: 61 RIKELEDVTSRAEVIDISKLSGDTVRFGATVSVLDEDSEEQTTYQIVGAHEADLKAGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++SPI +ALIGK++GD I V APGG K YE+ V +
Sbjct: 121 VASPIGKALIGKKVGDSIEVKAPGGSKFYEVTMVRF 156
>gi|149913254|ref|ZP_01901788.1| transcription elongation factor GreA [Roseobacter sp. AzwK-3b]
gi|149813660|gb|EDM73486.1| transcription elongation factor GreA [Roseobacter sp. AzwK-3b]
Length = 156
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 86/157 (54%), Positives = 125/157 (79%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T +G ++ EL+ + EERP II+AISEAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPMTRRGHTALEVELKQLKSEERPAIIRAISEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+RAEVID + + G I FGATV+LV++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGVISRAEVIDPTKLKGP-IKFGATVTLVDEDTDEEKTWQIVGEYEANIENGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD + V PGGEK+YE+L++ +I
Sbjct: 120 MKSPIARALIGKEAGDSVEVRTPGGEKSYEVLKIEYI 156
>gi|294676071|ref|YP_003576686.1| transcription elongation factor GreA [Rhodobacter capsulatus SB
1003]
gi|294474891|gb|ADE84279.1| transcription elongation factor GreA [Rhodobacter capsulatus SB
1003]
Length = 156
Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 123/157 (78%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G+D + +EL+ + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKIPMTRAGYDVLDEELKTLKSVERPAVIKAIAEAREHGDLSENAEYHAAREKQSFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+I+ RAEVID +SG I FGATV+LV++++ +++ YQIVG+ EAD++ GL++
Sbjct: 61 RIKELESILGRAEVIDTVKLSGS-IKFGATVTLVDEDTEEERTYQIVGEHEADLERGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARALIGK+ GD + V PGG+++YEIL V ++
Sbjct: 120 IKSPLARALIGKDEGDSVEVRTPGGQRSYEILSVRFL 156
>gi|114570689|ref|YP_757369.1| transcription elongation factor GreA [Maricaulis maris MCS10]
gi|122315542|sp|Q0AMQ6|GREA_MARMM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|114341151|gb|ABI66431.1| transcription elongation factor GreA [Maricaulis maris MCS10]
Length = 157
Score = 177 bits (448), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 120/156 (76%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G + +EL+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG
Sbjct: 1 MNKIPMTVAGQIALDEELKRLKTIERPAVIAAISEAREHGDLSENAEYHAAKERQGWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ + RA+VIDI+ MSGD + FGATV+++++++ + YQIVG+ E+DV+SG +S
Sbjct: 61 RVQELEDKLARAQVIDITKMSGDTVKFGATVTVLDEDTEQESTYQIVGEDESDVKSGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIAR++I KE+GD+ VNAPGG K+YEI+ V W
Sbjct: 121 ISSPIARSMINKEVGDVAEVNAPGGLKSYEIMSVSW 156
>gi|153004935|ref|YP_001379260.1| transcription elongation factor GreA [Anaeromyxobacter sp. Fw109-5]
gi|152028508|gb|ABS26276.1| transcription elongation factor GreA [Anaeromyxobacter sp. Fw109-5]
Length = 168
Score = 176 bits (447), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 120/158 (75%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++P+T G ++++EL+ + ERP+I+K I+EAR++GDLSENAEY AAKE Q+ E
Sbjct: 1 MSERVPMTKGGLLRLKEELKRLKNVERPKIVKEIAEARSHGDLSENAEYHAAKEKQSHIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ++E+ I AEVID+S +GDR+ FGATVSL E SGD Y+IVG+ EAD++ G +
Sbjct: 61 GRILQVEHWIASAEVIDVSKHAGDRVVFGATVSLEESESGDHVTYRIVGELEADLKQGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIG+E GD ++V PGG+K YEI + ++
Sbjct: 121 SVTSPIARALIGREEGDAVTVRTPGGQKEYEIQSISFV 158
>gi|86158153|ref|YP_464938.1| transcription elongation factor GreA [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774664|gb|ABC81501.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-C]
Length = 166
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 118/155 (76%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
++P+T G +++ ELR + ERP+I+K I+EARA+GDLSENAEY AAKE Q+ EGR+
Sbjct: 3 RVPMTKGGLVRLKDELRRLKSVERPKIVKEIAEARAHGDLSENAEYHAAKEKQSHIEGRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A++E+ I AEVID++ +GDR+ FGATVSL + SGD+ Y+IVG+ EAD++ G +S++
Sbjct: 63 AQVEHWIASAEVIDVTKHAGDRVVFGATVSLEDTESGDQVTYRIVGELEADLKQGKISVT 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIG+ GD + V +PGGEK YEI V ++
Sbjct: 123 SPIARALIGRSEGDTVVVRSPGGEKEYEIQSVAFV 157
>gi|197122524|ref|YP_002134475.1| transcription elongation factor GreA [Anaeromyxobacter sp. K]
gi|220917309|ref|YP_002492613.1| transcription elongation factor GreA [Anaeromyxobacter dehalogenans
2CP-1]
gi|238689850|sp|B4UCU9|GREA_ANASK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|196172373|gb|ACG73346.1| transcription elongation factor GreA [Anaeromyxobacter sp. K]
gi|219955163|gb|ACL65547.1| transcription elongation factor GreA [Anaeromyxobacter dehalogenans
2CP-1]
Length = 166
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 118/155 (76%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
++P+T G +++ ELR + ERP+I+K I+EARA+GDLSENAEY AAKE Q+ EGR+
Sbjct: 3 RVPMTKGGLVRLKDELRRLKSVERPKIVKEIAEARAHGDLSENAEYHAAKEKQSHIEGRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A++E+ I AEVID++ +GDR+ FGATVSL + SGD+ Y+IVG+ EAD++ G +S++
Sbjct: 63 AQVEHWIASAEVIDVTKHAGDRVVFGATVSLEDAESGDQVTYRIVGELEADLKQGKISVT 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIG+ GD + V +PGGEK YEI V ++
Sbjct: 123 SPIARALIGRSEGDTVVVRSPGGEKEYEIQSVAFV 157
>gi|83854862|ref|ZP_00948392.1| transcription elongation factor GreA [Sulfitobacter sp. NAS-14.1]
gi|83941385|ref|ZP_00953847.1| transcription elongation factor GreA [Sulfitobacter sp. EE-36]
gi|83842705|gb|EAP81872.1| transcription elongation factor GreA [Sulfitobacter sp. NAS-14.1]
gi|83847205|gb|EAP85080.1| transcription elongation factor GreA [Sulfitobacter sp. EE-36]
Length = 156
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 122/156 (78%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ EL+ + ERP IIKAI+EAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPMTRAGHTALETELKHLKSVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ A+VID + MSG I FGATV+LV++++ ++K YQIVG+ EA+++ GL++
Sbjct: 61 RIKELEGVISLADVIDPAKMSG-AIKFGATVTLVDEDTDEEKTYQIVGEYEANIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGKE GD + V PGG+K+YE+L++++
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGDKSYEVLKIVY 155
>gi|117926297|ref|YP_866914.1| transcription elongation factor GreA [Magnetococcus sp. MC-1]
gi|166200673|sp|A0LC15|GREA_MAGSM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|117610053|gb|ABK45508.1| transcription elongation factor GreA [Magnetococcus sp. MC-1]
Length = 157
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 120/157 (76%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K+P+T +G ++++EL+ R+ +R RII AI EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MNPKVPMTLEGAQQLKEELKRRKTTDRKRIIAAIEEARAHGDLSENAEYHAAKEQQSFNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+A+LE ++ AEVID S ++ RI FGA V+++++++ ++ Y IVGD+EAD++ G +
Sbjct: 61 GRIAKLEGMLASAEVIDTSRLNSSRIVFGAKVTVIDEDTEEESTYHIVGDEEADLEKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSP+AR +IGKE GD I V APGG + +E++++ +
Sbjct: 121 SISSPMARGMIGKEAGDSIEVRAPGGTRHFEVVEITF 157
>gi|46202225|ref|ZP_00053548.2| COG0782: Transcription elongation factor [Magnetospirillum
magnetotacticum MS-1]
Length = 152
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/151 (54%), Positives = 118/151 (78%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++++ELR + ER +I+AI+EAR +GDLSENAEY AA+E Q+ EGR++EL
Sbjct: 1 MTPAGLAQLEEELRTLKYVERQAVIRAIAEAREHGDLSENAEYHAARERQSFIEGRVSEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+II+RA VIDI+++SGD++ FGATV+L ++++ D+ Y IVG EAD++SG +S+ SP+
Sbjct: 61 EDIISRAHVIDIASLSGDQVRFGATVTLADEDTDDEVVYTIVGAHEADIKSGRMSVHSPL 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK LGD + V APGG K+YEI+ V +
Sbjct: 121 ARALIGKHLGDTVEVTAPGGSKSYEIVDVKF 151
>gi|159045616|ref|YP_001534410.1| transcription elongation factor GreA [Dinoroseobacter shibae DFL
12]
gi|157913376|gb|ABV94809.1| transcription elongation factor GreA [Dinoroseobacter shibae DFL
12]
Length = 171
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 122/156 (78%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T +G + EL+ + ERP +I+AI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 16 MEKIPMTRRGHSALDTELKQLKSVERPAVIRAIAEAREHGDLSENAEYHAAREKQSFIEG 75
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +++RA+VID +T+SG + FGATV++V++++ ++K YQIVG+ EAD++ GL++
Sbjct: 76 RVKELEALLSRAQVIDPATLSG-AVKFGATVTIVDEDTDEEKTYQIVGEAEADIEKGLLN 134
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIARALIGKE GD + V PGG K+YEIL++ +
Sbjct: 135 LKSPIARALIGKEEGDSVEVRTPGGTKSYEILEIAY 170
>gi|315497713|ref|YP_004086517.1| transcription elongation factor grea [Asticcacaulis excentricus CB
48]
gi|315415725|gb|ADU12366.1| transcription elongation factor GreA [Asticcacaulis excentricus CB
48]
Length = 152
Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 121/152 (79%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG++AE+
Sbjct: 1 MTVAGYQSLDDELKRLKSVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEGQIAEI 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ I+RA+VID+S +SG++I FGATV++V++++ ++ YQ+VG+ EADV++G +S+SSP+
Sbjct: 61 EDKISRAQVIDVSKLSGNQIKFGATVTVVDEDTEEEGRYQVVGEHEADVKAGRISLSSPL 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+RA+IGKE+GD++ VN P G K YEIL+V WI
Sbjct: 121 SRAMIGKEVGDVVEVNTPAGVKAYEILKVEWI 152
>gi|163794418|ref|ZP_02188389.1| GreA/GreB family elongation factor [alpha proteobacterium BAL199]
gi|159180142|gb|EDP64665.1| GreA/GreB family elongation factor [alpha proteobacterium BAL199]
Length = 157
Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 80/154 (51%), Positives = 115/154 (74%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T+ GF ++Q ELR + ERP +IKAI+EAR +GDLSENAEY AA++ Q+ EG
Sbjct: 1 MDKVPITAIGFQRLQDELRQLKSVERPAVIKAIAEAREHGDLSENAEYHAARDRQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE++I+R EVIDI ++GD + FG TV + ++++ ++ Y IVG EAD+ G++S
Sbjct: 61 RVAELEDVISRCEVIDIKKLTGDTVTFGVTVEVADEDTDEETKYTIVGPYEADLSKGMIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+SPIARALIGK +GD + V P G K+ EIL +
Sbjct: 121 TASPIARALIGKRVGDSVEVATPRGAKSLEILSI 154
>gi|149202969|ref|ZP_01879940.1| transcription elongation factor GreA [Roseovarius sp. TM1035]
gi|149143515|gb|EDM31551.1| transcription elongation factor GreA [Roseovarius sp. TM1035]
Length = 156
Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 122/157 (77%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T+ G ++ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPMTAGGHAALEVELKQLKSVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ AEVID + +SG I FGATV+LV+++SG+++ YQIVG+ EA ++ GL++
Sbjct: 61 RIKELEGILSLAEVIDPAKLSGP-IKFGATVTLVDEDSGEERTYQIVGEHEASIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SPIARALIGKE GD + V PGG++ YE+++V +I
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGDRGYEVIKVAYI 156
>gi|295688363|ref|YP_003592056.1| GreA/Greb family elongation factor [Caulobacter segnis ATCC 21756]
gi|295430266|gb|ADG09438.1| GreA/GreB family elongation factor [Caulobacter segnis ATCC 21756]
Length = 152
Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/152 (53%), Positives = 120/152 (78%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + +EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG++AE+
Sbjct: 1 MTVGGYQTLDEELKRLKTIERPSVIAAIAEARSHGDLSENAEYHAAKERQGWIEGQIAEI 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ I RA+VID+S +SG ++ FGATVS++++++ ++ YQIVGD EADV+SG +S+SSP+
Sbjct: 61 EDKIARAQVIDVSKLSGKQVKFGATVSVIDEDTEEEARYQIVGDHEADVKSGRISLSSPL 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+RA+IGKE+G+++ VN PGG K YEI +V W+
Sbjct: 121 SRAMIGKEVGEVVEVNTPGGVKAYEITKVEWL 152
>gi|298292332|ref|YP_003694271.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
gi|296928843|gb|ADH89652.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
Length = 152
Score = 174 bits (440), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/151 (56%), Positives = 119/151 (78%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL+ RQQ +R RII AISEARA+GDLSENAEY AAKE Q LNEGR+AEL
Sbjct: 1 MTPGGHAALEIELKQRQQVDRQRIISAISEARAHGDLSENAEYHAAKEQQALNEGRIAEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ ++RAE+ID++ +SGD + FGATV+L+++++ ++K++QIVGD EAD ++G +SISSP+
Sbjct: 61 EDKLSRAEIIDVAKLSGDTVMFGATVTLIDEDTEEEKSWQIVGDMEADAKAGRISISSPL 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK+ G + V P G ++YEI V +
Sbjct: 121 ARALIGKKRGTSVEVVTPKGARSYEIAAVRF 151
>gi|119383180|ref|YP_914236.1| transcription elongation factor GreA [Paracoccus denitrificans
PD1222]
gi|166200684|sp|A1AZ46|GREA_PARDP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|119372947|gb|ABL68540.1| transcription elongation factor GreA [Paracoccus denitrificans
PD1222]
Length = 156
Score = 173 bits (439), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 124/157 (78%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G+D++ +ELR + +RP +I+AI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKIPMTRAGYDQLDEELRELRSVQRPAVIRAIAEAREHGDLSENAEYHAAREKQSFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++RAEVID + ++G I FGATV+LV+++S +++ YQIVG+ EAD++ GL++
Sbjct: 61 RIKELEMILSRAEVIDPTRLNGS-IKFGATVTLVDEDSEEERTYQIVGEAEADLERGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARALIGK+ GD I V PGG K+YEI+ + ++
Sbjct: 120 IRSPLARALIGKDEGDSIEVVTPGGGKSYEIISIRYV 156
>gi|114321129|ref|YP_742812.1| transcription elongation factor GreA [Alkalilimnicola ehrlichii
MLHE-1]
gi|122311293|sp|Q0A765|GREA_ALHEH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|114227523|gb|ABI57322.1| transcription elongation factor GreA [Alkalilimnicola ehrlichii
MLHE-1]
Length = 158
Score = 173 bits (439), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 125/157 (79%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T++G +K+++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MSKVPLTARGAEKLREELQRLKTVERPRIIQAIAEAREHGDLKENAEYHAAREQQSFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID + ++ ++ FGATV LV+++SG + YQIVG+ EAD++ GLV
Sbjct: 61 RIQEIEGKLSNAQVIDPAAVNAQGKVIFGATVDLVDEDSGKEVTYQIVGEDEADIKQGLV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIARALIGKE GD+++V APGGE+ YEI++V +
Sbjct: 121 SVNSPIARALIGKEEGDLVTVQAPGGEREYEIVEVRY 157
>gi|302382095|ref|YP_003817918.1| transcription elongation factor GreA [Brevundimonas subvibrioides
ATCC 15264]
gi|302192723|gb|ADL00295.1| transcription elongation factor GreA [Brevundimonas subvibrioides
ATCC 15264]
Length = 152
Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/151 (54%), Positives = 117/151 (77%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G+ + +L+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG +AE+
Sbjct: 1 MTAEGYRSLDDQLKQLKSVERPSVIAAISEAREHGDLSENAEYHAAKERQGWIEGSIAEI 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ I+RA+VID+S +SGD++ FGATV++V++++ ++ YQIVG+ EADV+ G +SISSPI
Sbjct: 61 EDKISRAQVIDVSKLSGDQVKFGATVTVVDEDTEEEGRYQIVGEHEADVKKGKISISSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARA+I K +GD + VN PGG K YEIL+V W
Sbjct: 121 ARAMISKAVGDTVEVNTPGGVKAYEILKVEW 151
>gi|254293474|ref|YP_003059497.1| transcription elongation factor GreA [Hirschia baltica ATCC 49814]
gi|254042005|gb|ACT58800.1| transcription elongation factor GreA [Hirschia baltica ATCC 49814]
Length = 157
Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 119/155 (76%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T++G ++ EL+ + RP +I+AI+ AR +GDLSENAEY AAKE Q+ EGR+
Sbjct: 3 RIPMTAQGHQALEDELKHLKTVARPEVIQAIAVAREHGDLSENAEYHAAKESQSHIEGRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
EL++ + RA+VID S +SGD I FGATV++V++++ ++ Y+IVG+ EA++ G +S+S
Sbjct: 63 IELDSKLARAQVIDTSKLSGDNIKFGATVTVVDEDTEEEATYKIVGEDEANIADGKISLS 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARA+IGKE GDI V+APGG KTYEIL V WI
Sbjct: 123 SPLARAMIGKEEGDIAEVSAPGGAKTYEILDVKWI 157
>gi|126734602|ref|ZP_01750348.1| transcription elongation factor GreA [Roseobacter sp. CCS2]
gi|126715157|gb|EBA12022.1| transcription elongation factor GreA [Roseobacter sp. CCS2]
Length = 156
Score = 173 bits (438), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 121/156 (77%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T GFDK+ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MDKIPLTQAGFDKLDAELKHLKTVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ A+VID + +SG I FGATV+LV++++ ++K YQIVG+ EAD+++G ++
Sbjct: 61 RVKELEGVISLADVIDPTKLSG-TIKFGATVALVDEDTDEEKTYQIVGEYEADIENGKLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP++RALIGK+ GD + V PGG ++YEIL + +
Sbjct: 120 MKSPLSRALIGKDEGDSVDVRTPGGVRSYEILSIAY 155
>gi|84515779|ref|ZP_01003140.1| transcription elongation factor GreA [Loktanella vestfoldensis
SKA53]
gi|84510221|gb|EAQ06677.1| transcription elongation factor GreA [Loktanella vestfoldensis
SKA53]
Length = 156
Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GFDKI EL+ + ERP II+AISEAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPLTRAGFDKIDAELKHLKSVERPAIIRAISEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ A+VID S SG + FGATV LV++++ ++K Y IVG+ EAD++SG ++
Sbjct: 61 RVKELEGVISLADVIDPSKFSGP-VKFGATVLLVDEDTDEEKTYLIVGEYEADIESGKLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+ARALIGK+ GD I V+ PGG ++YEIL++ +
Sbjct: 120 MKSPLARALIGKDEGDSIEVSTPGGVRSYEILKITY 155
>gi|114799104|ref|YP_759372.1| transcription elongation factor GreA [Hyphomonas neptunium ATCC
15444]
gi|122942711|sp|Q0C4H1|GREA_HYPNA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|114739278|gb|ABI77403.1| transcription elongation factor GreA [Hyphomonas neptunium ATCC
15444]
Length = 157
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 121/156 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T++G +Q EL+ + ERP II AISEAR++GDLSENAEY AAKE Q+ EG
Sbjct: 1 MERIPMTAEGHAALQAELKVLKSVERPSIIAAISEARSHGDLSENAEYHAAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++EL++ + RA+VID+S + G ++ FGATV++ + ++ D++ Y+IVG+ EADV+ G +S
Sbjct: 61 RISELDDKLARADVIDVSKLGGSKVRFGATVTIADVDTEDEQTYKIVGEDEADVKQGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++SPIARALIGKE GD V AP G + YE+++V++
Sbjct: 121 VTSPIARALIGKEEGDEAEVAAPAGARAYEVIKVVY 156
>gi|288957102|ref|YP_003447443.1| transcription elongation factor [Azospirillum sp. B510]
gi|288909410|dbj|BAI70899.1| transcription elongation factor [Azospirillum sp. B510]
Length = 157
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 121/156 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+++Q+EL+ + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKVPMTAAGFNRLQEELKHLKITERPAVIKAIAEAREHGDLSENAEYHAARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I+RAEVID + ++G + FGATV+L ++++ ++ YQIVG E+D+++ L+S
Sbjct: 61 RVLELEDKISRAEVIDPAKLTGSTVKFGATVTLADQDTDEETTYQIVGQDESDIKNRLLS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I +P+ARALI K +GD + V+ PGG K YEI+ V +
Sbjct: 121 IQAPLARALINKSVGDSVEVSTPGGSKLYEIVSVEF 156
>gi|157804252|ref|YP_001492801.1| transcription elongation factor GreA [Rickettsia canadensis str.
McKiel]
gi|166200696|sp|A8F083|GREA_RICCK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|157785515|gb|ABV74016.1| transcription elongation factor GreA [Rickettsia canadensis str.
McKiel]
Length = 162
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 116/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 1 MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDIS +SGD I FGATV+L++ ++ +K Y +VG+ EAD+ V
Sbjct: 61 GRIKELEDMAARAEIIDISKLSGDNIKFGATVTLIDDDTEEKVTYIVVGEYEADITRKRV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE+++V +
Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVEVEY 157
>gi|163732327|ref|ZP_02139773.1| transcription elongation factor GreA [Roseobacter litoralis Och
149]
gi|161394625|gb|EDQ18948.1| transcription elongation factor GreA [Roseobacter litoralis Och
149]
Length = 156
Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T KG ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EG
Sbjct: 1 MDKIPMTRKGHTDLEAELKNLKSVERPAIISAIAEAREHGDLSENAEYHSAREKHSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE ++ AEVID S MSG I FGATV+LV++++ ++K +QIVG+ EA+V+ GL++
Sbjct: 61 RIKELEGVLGLAEVIDPSKMSG-TIKFGATVTLVDEDTDEEKTWQIVGEHEANVEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGK+ GD + V PGGEK YE+L++++
Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGEKAYEVLKIVY 155
>gi|88812984|ref|ZP_01128227.1| transcription elongation factor GreA [Nitrococcus mobilis Nb-231]
gi|88789762|gb|EAR20886.1| transcription elongation factor GreA [Nitrococcus mobilis Nb-231]
Length = 158
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/153 (53%), Positives = 117/153 (76%), Gaps = 1/153 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G +++EL + ERP+I++AI+EARA+GDL ENAEY AA+E Q+L EGR+AE
Sbjct: 5 PLTVRGAQMLKEELARLKTRERPKIVRAIAEARAHGDLKENAEYHAAREQQSLLEGRIAE 64
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE + A++ID+ ++S D ++ FG TV L E++SGD+ YQIVG+ EAD++ G VSI S
Sbjct: 65 LEEKLANAQIIDVRSLSADGKVVFGVTVVLAEESSGDEMTYQIVGEDEADIKHGKVSIHS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
PIARALIGKE G+I+ V AP G ++YEI++V +
Sbjct: 125 PIARALIGKEEGEIVEVRAPAGNRSYEIVEVRY 157
>gi|83951519|ref|ZP_00960251.1| transcription elongation factor GreA [Roseovarius nubinhibens ISM]
gi|83836525|gb|EAP75822.1| transcription elongation factor GreA [Roseovarius nubinhibens ISM]
Length = 164
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 123/157 (78%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T +G + ++ EL+ + EERP II+AI+EAR +GDLSENAEY +A+E Q+ EG
Sbjct: 9 MEKIPMTRRGHEALEVELKHLKSEERPAIIRAIAEAREHGDLSENAEYHSAREKQSFIEG 68
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +++ AEV D + +SG I FGATV+LV++++ ++K +QIVG+ EA ++ GL++
Sbjct: 69 RIKELEGVLSLAEVFDPAKLSGP-IKFGATVTLVDEDTDEEKTWQIVGEHEASIEKGLLN 127
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SPIARALIGK+ GD + V PGGE++YE+L++ +I
Sbjct: 128 IKSPIARALIGKDEGDSVEVRTPGGERSYEVLKIEYI 164
>gi|255261573|ref|ZP_05340915.1| transcription elongation factor GreA [Thalassiobium sp. R2A62]
gi|255103908|gb|EET46582.1| transcription elongation factor GreA [Thalassiobium sp. R2A62]
Length = 156
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T G+D + EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MDKIPLTKAGYDALNAELKHLKSVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ A+VID S MSG FGA V LV++++ ++K+YQIVG+ EAD+++G ++
Sbjct: 61 RVKELEGVISLADVIDTSKMSG-TAKFGAMVKLVDEDTDEEKSYQIVGEHEADIENGKLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+ARALIGK+ GD + V PGG K+YEIL++ +
Sbjct: 120 MKSPLARALIGKDEGDSVEVRTPGGGKSYEILEINY 155
>gi|220934154|ref|YP_002513053.1| transcription elongation factor GreA [Thioalkalivibrio sp.
HL-EbGR7]
gi|254799576|sp|B8GNX7|GREA_THISH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|219995464|gb|ACL72066.1| transcription elongation factor GreA [Thioalkalivibrio sp.
HL-EbGR7]
Length = 158
Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T G +K++ EL+ + E+RPR+I AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 KTPLTVAGANKLKAELQKLKSEDRPRVIAAIAEAREHGDLKENAEYHAAREQQGFIEGRI 62
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A++ID++T+ +G ++ FGATV L ++ +G + YQIVGD EAD++ G +S+
Sbjct: 63 KEIEAKLSNAQIIDVTTLNAGGKVVFGATVDLSDEETGKEVTYQIVGDDEADIKEGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIARALIGKE GD+++V APGG+K YEI+ V +I
Sbjct: 123 NSPIARALIGKEEGDVVTVKAPGGDKDYEIVAVKYI 158
>gi|157965027|ref|YP_001499851.1| transcription elongation factor GreA [Rickettsia massiliae MTU5]
gi|157844803|gb|ABV85304.1| Transcription elongation factor GreA [Rickettsia massiliae MTU5]
Length = 198
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 115/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 37 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 96
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ +K Y IVG+ EAD+ V
Sbjct: 97 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEKVTYIIVGEYEADITRKRV 156
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 157 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 193
>gi|163745673|ref|ZP_02153033.1| transcription elongation factor GreA [Oceanibulbus indolifex
HEL-45]
gi|161382491|gb|EDQ06900.1| transcription elongation factor GreA [Oceanibulbus indolifex
HEL-45]
Length = 156
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 121/156 (77%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ EL+ + ERP IIKAI+EAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPMTRDGHTALEVELKHLKSVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ A+VID +SG I FGATV+LV++++ ++K YQIVG+ EA+++ GL++
Sbjct: 61 RIKELEGVISLADVIDPKKLSGS-IKFGATVTLVDEDTEEEKTYQIVGEYEANIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGK+ GD + V PGG+K+YE+L++++
Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGQKSYEVLKIVY 155
>gi|74317147|ref|YP_314887.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC
25259]
gi|74056642|gb|AAZ97082.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC
25259]
Length = 158
Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 87/155 (56%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T G +K++ EL+ + +RP +I+AI+EARA GDLSENAEY AAKE Q EGR+
Sbjct: 3 KFPLTVVGAEKLRAELQHLKSVQRPAVIQAIAEARAQGDLSENAEYDAAKEKQGFIEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
AELE ++ A++ID +T+ D RI FGATV L + SGD YQIVGD EAD++ G +S+
Sbjct: 63 AELEGKLSNAQIIDPTTLDADGRIVFGATVDLEDVESGDSVTYQIVGDDEADIKQGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SSPIARALIGK GD + V APGG + YE+L VL+
Sbjct: 123 SSPIARALIGKYAGDAVDVQAPGGVRQYEVLDVLY 157
>gi|160900362|ref|YP_001565944.1| transcription elongation factor GreA [Delftia acidovorans SPH-1]
gi|160365946|gb|ABX37559.1| transcription elongation factor GreA [Delftia acidovorans SPH-1]
Length = 158
Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 120/155 (77%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K++ EL + ERP II+AI+EARA GDLSENAEY+AAK+ Q EGR+A
Sbjct: 4 IPITKRGAEKLKDELHRLKTVERPSIIQAIAEARAQGDLSENAEYEAAKDRQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ ++ A++ID S++ +G R+ FGATV L +++SGD YQIVG+ EAD++ GL+++S
Sbjct: 64 EVESKLSAAQIIDPSSVDAGGRVVFGATVELEDEDSGDTVKYQIVGEDEADLKLGLINVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGKE GD V APGGE+ YE++ V ++
Sbjct: 124 SPIARALIGKEEGDTAVVQAPGGERRYEVVSVRYL 158
>gi|85705718|ref|ZP_01036815.1| transcription elongation factor GreA [Roseovarius sp. 217]
gi|85669708|gb|EAQ24572.1| transcription elongation factor GreA [Roseovarius sp. 217]
Length = 156
Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/157 (52%), Positives = 121/157 (77%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T+ G ++ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPMTAGGHAALEVELKQLKSVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ AEVID + +SG I FGATV+LV++++ +++ YQIVG+ EA ++ GL++
Sbjct: 61 RIKELEGILSLAEVIDPAKLSG-AIKFGATVTLVDEDTDEERTYQIVGEHEASIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SPIARALIGKE GD + V PGG++ YE+++V +I
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGDRAYEVIKVAYI 156
>gi|110680576|ref|YP_683583.1| transcription elongation factor GreA [Roseobacter denitrificans OCh
114]
gi|109456692|gb|ABG32897.1| transcription elongation factor GreA [Roseobacter denitrificans OCh
114]
Length = 312
Score = 171 bits (432), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T KG ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EG
Sbjct: 157 MDKIPMTRKGHSDLEAELKNLKSVERPAIISAIAEAREHGDLSENAEYHSAREKHSFIEG 216
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE ++ AEVID S MSG I FGATV+LV++++ ++K +QIVG+ EA+V+ GL++
Sbjct: 217 RIKELEGVLGLAEVIDPSKMSGA-IKFGATVTLVDEDTDEEKTWQIVGEHEANVEKGLLN 275
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGK+ GD + V PGG+K YE+L++++
Sbjct: 276 IKSPIARALIGKDEGDSVEVRTPGGQKAYEVLKIVY 311
>gi|157826347|ref|YP_001494067.1| transcription elongation factor GreA [Rickettsia akari str.
Hartford]
gi|157800305|gb|ABV75559.1| transcription elongation factor GreA [Rickettsia akari str.
Hartford]
Length = 192
Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 115/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I + ISEAR +GDLSENAEY+AA+E Q E
Sbjct: 31 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDISEAREHGDLSENAEYEAAREKQAFIE 90
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 91 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 150
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 151 SIASPIAKALIGKSVGDFVEVTTPRGSKSYEVVTVEY 187
>gi|304321206|ref|YP_003854849.1| transcription elongation factor GreA [Parvularcula bermudensis
HTCC2503]
gi|303300108|gb|ADM09707.1| transcription elongation factor GreA [Parvularcula bermudensis
HTCC2503]
Length = 157
Score = 170 bits (430), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 121/156 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T GF K++ +++ + ERP +I+AISEAR +GDLSENAEY AAKE Q+ EG
Sbjct: 1 MEKFPMTKAGFAKLEADIKHLKTVERPAVIQAISEAREHGDLSENAEYHAAKERQSWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ +LE+ +RA+VID++++SG + FGA+V+LV++ + ++K YQIVGD EAD+++G +S
Sbjct: 61 QVLDLEDKHSRAQVIDVASLSGPDVKFGASVTLVDEETEEEKVYQIVGDLEADIKAGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIARALIGKE GD + V APGG YEI +V +
Sbjct: 121 ISSPIARALIGKEEGDQVEVAAPGGSHIYEIEKVEY 156
>gi|126215706|sp|Q4UJS8|GREA_RICFE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
Length = 162
Score = 169 bits (429), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 115/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 1 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 61 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 157
>gi|114778233|ref|ZP_01453105.1| transcription elongation factor GreA [Mariprofundus ferrooxydans
PV-1]
gi|114551480|gb|EAU54035.1| transcription elongation factor GreA [Mariprofundus ferrooxydans
PV-1]
Length = 157
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 118/157 (75%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++++P+T KG ++++Q L + + E+R +I+ I ARA+GDLSENAEY AAKE Q +NEG
Sbjct: 1 MERVPMTKKGAEELKQLLAYLKGEKRHQIVSTIESARAHGDLSENAEYHAAKEEQGMNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ++E+ + RA VID +T+ +++ FGATV L++ N G + YQIVG EAD++ G+VS
Sbjct: 61 RITDIEDKLARAHVIDPATIKAEKVVFGATVELIDVNQGTEVTYQIVGVDEADIEKGMVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I+SPIARA+IGKE GD+ V APGGE+ +EI + ++
Sbjct: 121 ITSPIARAMIGKEEGDLAVVQAPGGEREFEIQAIEYV 157
>gi|239948368|ref|ZP_04700121.1| transcription elongation factor [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239922644|gb|EER22668.1| transcription elongation factor [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 206
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 115/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 45 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 104
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 105 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 164
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 165 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 201
>gi|77462321|ref|YP_351825.1| transcription elongation factor GreA [Rhodobacter sphaeroides
2.4.1]
gi|126461197|ref|YP_001042311.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC
17029]
gi|221638177|ref|YP_002524439.1| transcription elongation factor GreA [Rhodobacter sphaeroides
KD131]
gi|332560203|ref|ZP_08414525.1| transcription elongation factor GreA [Rhodobacter sphaeroides WS8N]
gi|123592895|sp|Q3J5L0|GREA_RHOS4 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166200690|sp|A3PGS3|GREA_RHOS1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799566|sp|B9KLF5|GREA_RHOSK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|77386739|gb|ABA77924.1| transcription elongation factor GreA [Rhodobacter sphaeroides
2.4.1]
gi|126102861|gb|ABN75539.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC
17029]
gi|221158958|gb|ACL99937.1| Transcription elongation factor greA [Rhodobacter sphaeroides
KD131]
gi|332277915|gb|EGJ23230.1| transcription elongation factor GreA [Rhodobacter sphaeroides WS8N]
Length = 156
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 120/157 (76%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T GF + EL+ + ERP +I++I+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MDKIPMTRAGFTALDDELKTLKTVERPAVIRSIAEAREHGDLSENAEYHAAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ AEVID + +SG I FGATV+++++ + +++ YQIVG+ EAD+++GL++
Sbjct: 61 RIKELEAILSLAEVIDPAKLSGS-IKFGATVTILDEETEEERTYQIVGEAEADIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARALIGK+ GD I V PGGE+ YE++ V ++
Sbjct: 120 IKSPLARALIGKDEGDSIEVKTPGGERGYEVVSVRFV 156
>gi|254437943|ref|ZP_05051437.1| transcription elongation factor GreA subfamily [Octadecabacter
antarcticus 307]
gi|198253389|gb|EDY77703.1| transcription elongation factor GreA subfamily [Octadecabacter
antarcticus 307]
Length = 156
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 117/156 (75%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T GF+K+ EL+ + ERP II+AIS+AR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MDKIPLTRAGFNKLDAELKHLKSVERPAIIRAISDAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ A+VID+S +SG + FGA V+LV++ + + YQIVG+ EAD++ G ++
Sbjct: 61 RVKELEGAISLADVIDVSKLSG-TVKFGAHVTLVDEATDKETTYQIVGEYEADIEQGRLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIARALIGK+ GD + V PGG K+YEIL +++
Sbjct: 120 MKSPIARALIGKDEGDSVEVRTPGGVKSYEILTIVF 155
>gi|67459752|ref|YP_247376.1| transcription elongation factor GreA [Rickettsia felis URRWXCal2]
gi|67005285|gb|AAY62211.1| Transcription elongation factor GreA [Rickettsia felis URRWXCal2]
Length = 192
Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 115/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 31 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 90
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 91 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 150
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 151 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 187
>gi|313673623|ref|YP_004051734.1| transcription elongation factor grea [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940379|gb|ADR19571.1| transcription elongation factor GreA [Calditerrivibrio
nitroreducens DSM 19672]
Length = 157
Score = 169 bits (427), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/154 (53%), Positives = 113/154 (73%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+IP+T +GF+K+++EL + ER +I+AI EARA+GDLSENAEY AAKE Q L E
Sbjct: 1 MDRIPITPEGFEKLKKELERLKTVERKEVIEAIKEARAHGDLSENAEYDAAKERQGLIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AELE+ I R EVID S SGD++ FG V + +G+KK Y+IVG EAD+ G +S
Sbjct: 61 KIAELESKIGRFEVIDPSNFSGDKVVFGVYVEIENVETGEKKRYRIVGPDEADISKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ SPIA+AL+GK +GD + V APGG+K YEIL +
Sbjct: 121 VISPIAKALMGKSVGDTVLVRAPGGDKEYEILDI 154
>gi|34581077|ref|ZP_00142557.1| transcription elongation factor EF [Rickettsia sibirica 246]
gi|25453000|sp|Q92FZ5|GREA_RICCN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|28262462|gb|EAA25966.1| transcription elongation factor EF [Rickettsia sibirica 246]
Length = 162
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 114/157 (72%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 1 MNTKFPITAKGFEKLEHELKHLKHVERKKISADIAEAREHGDLSENAEYEAAREKQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 61 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 157
>gi|15893255|ref|NP_360969.1| transcription elongation factor GreA [Rickettsia conorii str.
Malish 7]
gi|157829162|ref|YP_001495404.1| transcription elongation factor GreA [Rickettsia rickettsii str.
'Sheila Smith']
gi|165933891|ref|YP_001650680.1| transcription elongation factor GreA [Rickettsia rickettsii str.
Iowa]
gi|238651107|ref|YP_002916965.1| transcription elongation factor GreA [Rickettsia peacockii str.
Rustic]
gi|15620474|gb|AAL03870.1| transcription elongation factor EF [Rickettsia conorii str. Malish
7]
gi|157801643|gb|ABV76896.1| transcription elongation factor GreA [Rickettsia rickettsii str.
'Sheila Smith']
gi|165908978|gb|ABY73274.1| transcription elongation factor [Rickettsia rickettsii str. Iowa]
gi|238625205|gb|ACR47911.1| transcription elongation factor GreA [Rickettsia peacockii str.
Rustic]
Length = 206
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 114/157 (72%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 45 MNTKFPITAKGFEKLEHELKHLKHVERKKISADIAEAREHGDLSENAEYEAAREKQAFIE 104
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 105 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 164
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 165 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 201
>gi|15604691|ref|NP_221209.1| transcription elongation factor GreA [Rickettsia prowazekii str.
Madrid E]
gi|121608|sp|P27640|GREA_RICPR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|46346|emb|CAA78107.1| GreA [Rickettsia prowazekii]
gi|434678|gb|AAB81401.1| GreA [Rickettsia prowazekii]
gi|3861386|emb|CAA15285.1| TRANSCRIPTION ELONGATION FACTOR GREA (greA) [Rickettsia prowazekii]
gi|292572525|gb|ADE30440.1| Transcription elongation factor GreA [Rickettsia prowazekii Rp22]
Length = 162
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 114/157 (72%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 1 MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 61 GRIKELEDMTARAEIIDICKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITKKRV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGLKSYEVVTVEY 157
>gi|163857848|ref|YP_001632146.1| hypothetical protein Bpet3535 [Bordetella petrii DSM 12804]
gi|163261576|emb|CAP43878.1| greA [Bordetella petrii]
Length = 158
Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T++G +++Q EL + ERP +I AI+EARA GDLSENAEY AA+E Q EGR+A
Sbjct: 4 IPLTARGAERLQAELHRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE ++ A +ID + + D R FGATV + + +SGD+ +YQIVGD EAD++S L+S+S
Sbjct: 64 ELEGTLSNAHIIDPAALDADGRAVFGATVDIEDLDSGDRLSYQIVGDVEADIKSNLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARALIGK GD++ V AP G + YE+L V +I
Sbjct: 124 SPVARALIGKSEGDVVEVKAPSGVREYEVLGVRYI 158
>gi|21242607|ref|NP_642189.1| transcription elongation factor GreA [Xanthomonas axonopodis pv.
citri str. 306]
gi|78047466|ref|YP_363641.1| transcription elongation factor GreA [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|294624591|ref|ZP_06703266.1| transcription elongation factor GreA [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294666706|ref|ZP_06731942.1| transcription elongation factor GreA [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|25452987|sp|Q8PLD9|GREA_XANAC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|21108069|gb|AAM36725.1| transcriptional elongation factor [Xanthomonas axonopodis pv. citri
str. 306]
gi|78035896|emb|CAJ23587.1| transcriptional elongation factor [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|292601126|gb|EFF45188.1| transcription elongation factor GreA [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292603531|gb|EFF46946.1| transcription elongation factor GreA [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 158
Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+
Sbjct: 2 RAPMTSKGAQRLREELEHLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRI 61
Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+LE+ ++ AE+IDI+ +S G +I FGATV+L + + ++K YQIVGD EAD++ GL++I
Sbjct: 62 KQLESELSHAEIIDITKLSAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAI 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSP+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 122 SSPLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 157
>gi|229587229|ref|YP_002845730.1| transcription elongation factor GreA [Rickettsia africae ESF-5]
gi|228022279|gb|ACP53987.1| Transcription elongation factor GreA [Rickettsia africae ESF-5]
Length = 185
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 114/157 (72%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 24 MNTKFPITAKGFEKLEHELKHLKHVERKKISADIAEAREHGDLSENAEYEAAREKQAFIE 83
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 84 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 143
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ + +
Sbjct: 144 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTIEY 180
>gi|146278508|ref|YP_001168667.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC
17025]
gi|166200695|sp|A4WVE8|GREA_RHOS5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|145556749|gb|ABP71362.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC
17025]
Length = 156
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/157 (51%), Positives = 120/157 (76%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GF + EL+ + ERP +I+AI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKIPMTRAGFAALDDELKLLKTVERPAVIRAIAEAREHGDLSENAEYHAAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +++ AEVID + +SG I FGATV+++++ + ++K YQIVG+ EAD+++GL++
Sbjct: 61 RIKELEALLSLAEVIDPARLSGS-IKFGATVTILDEETEEEKTYQIVGEAEADIENGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARALIGK+ GD I V PGGE+ YE++ V ++
Sbjct: 120 IKSPLARALIGKDEGDSIEVKTPGGERGYEVVSVRFV 156
>gi|89052989|ref|YP_508440.1| transcription elongation factor GreA [Jannaschia sp. CCS1]
gi|122999643|sp|Q28V47|GREA_JANSC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|88862538|gb|ABD53415.1| GreA/GreB family elongation factor [Jannaschia sp. CCS1]
Length = 156
Score = 168 bits (425), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 84/157 (53%), Positives = 118/157 (75%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T KG + + EL+ + ERP IIKAI+EAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPMTPKGLEAMNGELKQLKSVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ A+VID +T+SG I FGATV LV++ + ++K Y IVG+ EAD++ GL++
Sbjct: 61 RIKELEGSISLAQVIDPATLSG-AIKFGATVDLVDEETEEEKTYMIVGEAEADIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARALIGKE GD + V PGG K +EI+++ ++
Sbjct: 120 IKSPLARALIGKEEGDSVEVRTPGGAKGFEIVKISYV 156
>gi|91204868|ref|YP_537223.1| transcription elongation factor GreA [Rickettsia bellii RML369-C]
gi|123266252|sp|Q1RKI0|GREA_RICBR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|91068412|gb|ABE04134.1| Transcription elongation factor GreA [Rickettsia bellii RML369-C]
Length = 162
Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 115/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M+ K P+T +GF+K++ EL+ + ER ++ + I+EARA+GDLSENAEY+AA+E Q E
Sbjct: 1 MMAKFPITDQGFEKLEHELKHLKHVERKKVSEDIAEARAHGDLSENAEYEAAREKQAFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE+I RAE+I+++ +SGD I FGATV L++ + ++ Y IVG+ EAD+ V
Sbjct: 61 ARIKHLEDITARAEIINVAKLSGDSIKFGATVVLIDDETEEEVMYHIVGEYEADITKKRV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GDI+ V PGG K+YE++ + +
Sbjct: 121 SIASPIAKALIGKSVGDIVEVMTPGGVKSYEVVTIKY 157
>gi|291279481|ref|YP_003496316.1| transcription elongation factor GreA [Deferribacter desulfuricans
SSM1]
gi|290754183|dbj|BAI80560.1| transcription elongation factor GreA [Deferribacter desulfuricans
SSM1]
Length = 157
Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 116/156 (74%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+IP+T +G++K++ EL ++ ER +IKAI EAR +GDLSENAEY AAKE Q + E
Sbjct: 1 MDRIPITKEGYEKVKAELERLKKVERREVIKAIEEARGHGDLSENAEYDAAKERQGMIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ + R EVID S + GD++ FGATV + ++G+ K Y+IVG E+D+ G +S
Sbjct: 61 RIAELESKMARFEVIDTSKLKGDKVVFGATVKIENLDTGEIKTYKIVGPDESDISKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARAL+GK++GD ++V AP GE YEIL++ +
Sbjct: 121 IISPIARALVGKKVGDDVTVIAPNGEVEYEILEISF 156
>gi|124266456|ref|YP_001020460.1| transcription elongation factor GreA [Methylibium petroleiphilum
PM1]
gi|124259231|gb|ABM94225.1| transcription elongation factor GreA [Methylibium petroleiphilum
PM1]
Length = 168
Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + ER +I+AI+EARA GDLSENAEY+AAK+ Q EGR+
Sbjct: 14 IPLTKRGAEKLKEELHRLKSVERHAVIQAIAEARAQGDLSENAEYEAAKDKQGFIEGRIL 73
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ + A++ID + + +G R+ FGATV L E++SGD YQIVGD EAD++ GL+S+S
Sbjct: 74 EIESKMAAAQIIDPAMLDAGGRVVFGATVELEEESSGDSVTYQIVGDDEADLKQGLISVS 133
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARA+IGKE GD+ APGG + YEI++V ++
Sbjct: 134 SPIARAMIGKEAGDVAEFQAPGGTRRYEIVEVRYL 168
>gi|114771295|ref|ZP_01448715.1| transcription elongation factor GreA [alpha proteobacterium
HTCC2255]
gi|114548220|gb|EAU51107.1| transcription elongation factor GreA [alpha proteobacterium
HTCC2255]
Length = 156
Score = 167 bits (424), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 119/157 (75%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T GF EL+ + +RP +IKAI+EAR +GDLSENAEY +A+ELQ+ EG
Sbjct: 1 MDKIPMTPAGFKSADNELKQLKSVDRPSVIKAIAEAREHGDLSENAEYHSARELQSHIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE II+ A++ID+S +SG+ + FGATV LV++++ ++ QIVG+ EA++++ ++
Sbjct: 61 RIKELEAIISLAQIIDVSKLSGN-VKFGATVHLVDEDTDAERTLQIVGEHEANIENNQIN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++SPIARALIGKE GD + V PGG K+YEIL V +I
Sbjct: 120 MNSPIARALIGKEEGDSVEVRTPGGVKSYEILSVKFI 156
>gi|254487531|ref|ZP_05100736.1| transcription elongation factor GreA [Roseobacter sp. GAI101]
gi|214044400|gb|EEB85038.1| transcription elongation factor GreA [Roseobacter sp. GAI101]
Length = 160
Score = 167 bits (424), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG
Sbjct: 5 LEKIPMTRAGHSALETELKHLKTVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 64
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ A+VID + MSG I FGA V+LV++++ ++K YQIVG+ EA+++ GL++
Sbjct: 65 RVKELEGAISLADVIDPAKMSG-AIKFGAKVTLVDEDTDEEKTYQIVGEYEANIEKGLLN 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGK+ GD + V PGG K+YE+L++++
Sbjct: 124 IKSPIARALIGKDEGDSVEVRTPGGVKSYEVLKIIY 159
>gi|51474029|ref|YP_067786.1| transcription elongation factor GreA [Rickettsia typhi str.
Wilmington]
gi|81389908|sp|Q68VQ2|GREA_RICTY RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|51460341|gb|AAU04304.1| transcription elongation factor GreA [Rickettsia typhi str.
Wilmington]
Length = 162
Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 80/157 (50%), Positives = 114/157 (72%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 1 MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 61 GRIKELEDMTARAEIIDICKLSGDNIKFGATVTLIDDDTEEEVTYVIVGEYEADITKKRV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 121 SIASPIAKALIGKSVGDFVEVITPKGLKSYEVVTVEY 157
>gi|312795594|ref|YP_004028516.1| transcription elongation factor greA [Burkholderia rhizoxinica HKI
454]
gi|312167369|emb|CBW74372.1| Transcription elongation factor greA [Burkholderia rhizoxinica HKI
454]
Length = 179
Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+ IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q E
Sbjct: 21 FMSTIPLTKRGADQLRDELQRLKSVERPSVIHAIAEARAQGDLSENAEYDAAKEKQAFIE 80
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+AELE+ ++ A++ID + D R+ FGATV L + +SGDK YQIVGD EAD++ GL
Sbjct: 81 GRIAELESKLSAAQIIDPKAVDADGRVVFGATVDLEDLDSGDKVTYQIVGDDEADLEHGL 140
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S+SSPIARALIGK GD+ +V AP G + YEI+ V +
Sbjct: 141 ISVSSPIARALIGKFEGDVAAVQAPSGVREYEIIAVRY 178
>gi|84500249|ref|ZP_00998515.1| transcription elongation factor GreA [Oceanicola batsensis
HTCC2597]
gi|84392183|gb|EAQ04451.1| transcription elongation factor GreA [Oceanicola batsensis
HTCC2597]
Length = 156
Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GF ++ EL+ + ERP IIKAI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MEKIPMTRAGFTALEAELKHLKSVERPAIIKAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ A+VID T+SG + FGA V++V++++ ++K +QIVG+ EAD++ GL++
Sbjct: 61 RIKELEGVISLADVIDPKTLSG-AVKFGAKVTVVDEDTDEEKTWQIVGEYEADIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIARALIGKE GD + V PGG+++YEIL++ +
Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGDRSYEILKIEY 155
>gi|254450273|ref|ZP_05063710.1| transcription elongation factor GreA [Octadecabacter antarcticus
238]
gi|198264679|gb|EDY88949.1| transcription elongation factor GreA [Octadecabacter antarcticus
238]
Length = 156
Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 117/156 (75%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T GF+K+ EL+ + ERP II+AIS+AR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MDKIPLTRAGFNKLDAELKNLKSVERPAIIRAISDAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ A+VID+S +SG + FGA V+L+++ + + YQIVG+ EAD++ G ++
Sbjct: 61 RVKELEGAISLADVIDVSKLSG-TVKFGAHVTLIDEATDKETTYQIVGEYEADIEQGRLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIARALIGK+ GD + V PGG K+YEIL +++
Sbjct: 120 MKSPIARALIGKDEGDSVEVRTPGGVKSYEILTIVF 155
>gi|167587476|ref|ZP_02379864.1| transcription elongation factor GreA [Burkholderia ubonensis Bu]
Length = 158
Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ ++ A++ID S++ D R+ F ATV L + SGD YQIVGD EAD+ GL+S+S
Sbjct: 64 EIESKLSAAQIIDPSSLDADGRVVFAATVELEDLESGDTVKYQIVGDDEADLDHGLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158
>gi|260220957|emb|CBA29042.1| Transcription elongation factor greA [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 163
Score = 167 bits (422), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 84/154 (54%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G + ++ EL + ERP +I+AI+EARA GDLSENA+Y AAKE Q EGR+ E
Sbjct: 10 PITKRGAEMLKAELHKLKTVERPSVIQAIAEARAQGDLSENADYDAAKERQGFIEGRIQE 69
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E ++ A+VID ST+ D R+ FGATV L +++SG + YQIVG+ EAD++ GL++ISS
Sbjct: 70 VEGKLSAAQVIDPSTIQADGRVVFGATVELEDEDSGQQVKYQIVGEDEADLKQGLINISS 129
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
PIARALIGKE+GD V APGGE+ YE++ V +I
Sbjct: 130 PIARALIGKEVGDTAVVQAPGGERAYEVVAVHYI 163
>gi|288940454|ref|YP_003442694.1| transcription elongation factor GreA [Allochromatium vinosum DSM
180]
gi|288895826|gb|ADC61662.1| transcription elongation factor GreA [Allochromatium vinosum DSM
180]
Length = 158
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G +K+++EL ++ ERPRII+AI+EARA+GDL ENAEY AA+E Q EG
Sbjct: 1 MNKVPLTARGAEKLREELEQLKRVERPRIIEAIAEARAHGDLKENAEYHAAREQQGFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++TM + ++ FGATV ++E + ++ YQIVG+ EAD++ GL+
Sbjct: 61 RIKDIEGKLSHAQIIDVTTMPHNGKVIFGATVKVLELETDEEHCYQIVGEDEADLKQGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SP+AR LIGK GD+ S+ APGG + +EIL+V ++
Sbjct: 121 SVGSPLARCLIGKAEGDVASLQAPGGLREFEILEVQYV 158
>gi|317405977|gb|EFV86255.1| GreA protein [Achromobacter xylosoxidans C54]
Length = 158
Score = 167 bits (422), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 115/155 (74%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +++Q+EL+ + ERP +I AI+EARA GDLSENAEY AA+E Q EGR+A
Sbjct: 4 IPLTVRGAERLQEELQRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE ++ A +ID +++ + R FGATV + + +SGD+ YQIVGD EAD++S L+S+S
Sbjct: 64 ELEGTLSNAHLIDPTSLEAEGRAVFGATVDIEDLDSGDRVTYQIVGDVEADIKSNLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARALIGK GD++ V AP G + YE+L V +I
Sbjct: 124 SPVARALIGKSEGDVVEVKAPAGVREYEVLSVRYI 158
>gi|83719378|ref|YP_443292.1| transcription elongation factor GreA [Burkholderia thailandensis
E264]
gi|167582309|ref|ZP_02375183.1| transcription elongation factor GreA [Burkholderia thailandensis
TXDOH]
gi|167620406|ref|ZP_02389037.1| transcription elongation factor GreA [Burkholderia thailandensis
Bt4]
gi|257139528|ref|ZP_05587790.1| transcription elongation factor GreA [Burkholderia thailandensis
E264]
gi|83653203|gb|ABC37266.1| transcription elongation factor GreA [Burkholderia thailandensis
E264]
Length = 158
Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ ++ A++ID + + D R+ F ATV L + +GD YQIVGD EAD+ GL+S+S
Sbjct: 64 EIESKLSAAQIIDPTAVDADGRVVFAATVELEDLETGDTVKYQIVGDDEADLDHGLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V AP G + YEI+ VL+I
Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVLYI 158
>gi|167836215|ref|ZP_02463098.1| transcription elongation factor GreA [Burkholderia thailandensis
MSMB43]
Length = 158
Score = 166 bits (421), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ ++ A++ID + + D R+ F ATV L + +GD YQIVGD EAD+ GL+S+S
Sbjct: 64 EIESKLSAAQIIDPTVVDADGRVVFAATVELEDLETGDTVKYQIVGDDEADLDHGLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V AP G + YEI+ VL+I
Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVLYI 158
>gi|56695227|ref|YP_165575.1| transcription elongation factor GreA [Ruegeria pomeroyi DSS-3]
gi|81350946|sp|Q5LXA4|GREA_SILPO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|56676964|gb|AAV93630.1| transcription elongation factor GreA [Ruegeria pomeroyi DSS-3]
Length = 156
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GF ++ EL+ + ERP IIKAI+EAR +GDLSENAEY +A+E Q+ EG
Sbjct: 1 MEKIPMTPSGFAALEAELKQLKSVERPAIIKAIAEAREHGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +++ A+VID + +SG I FGA V+LV++++ ++K +QIVG+ EA+++ GL++
Sbjct: 61 RIKELEGVLSLADVIDPTKLSG-AIKFGARVTLVDEDTDEEKTWQIVGEHEANIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGK+ GD + V PGG+K+YEIL + +
Sbjct: 120 IKSPIARALIGKDEGDSVEVKTPGGQKSYEILSIEY 155
>gi|186475640|ref|YP_001857110.1| transcription elongation factor GreA [Burkholderia phymatum STM815]
gi|184192099|gb|ACC70064.1| transcription elongation factor GreA [Burkholderia phymatum STM815]
Length = 158
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G D+++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGADQLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ + A++ID S + D R+ F ATV L + +SGD YQIVGD EAD++ GL+S+S
Sbjct: 64 EIESKLAAAQIIDPSALDADGRVVFAATVDLEDLDSGDSVTYQIVGDDEADLEHGLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIIAVRYI 158
>gi|307730495|ref|YP_003907719.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
gi|307585030|gb|ADN58428.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
Length = 158
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 87/155 (56%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ + A+VID S + D R+ FGATV L + +SG YQIVGD EAD+ GL+SIS
Sbjct: 64 EIESKLAGAQVIDPSQVEADGRVVFGATVELEDLDSGASVKYQIVGDDEADIDHGLISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ SV APGG + YEI+ V ++
Sbjct: 124 SPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158
>gi|121594730|ref|YP_986626.1| transcription elongation factor GreA [Acidovorax sp. JS42]
gi|222110667|ref|YP_002552931.1| transcription elongation factor grea [Acidovorax ebreus TPSY]
gi|120606810|gb|ABM42550.1| transcription elongation factor GreA [Acidovorax sp. JS42]
gi|221730111|gb|ACM32931.1| transcription elongation factor GreA [Acidovorax ebreus TPSY]
Length = 158
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 116/155 (74%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EGR+
Sbjct: 4 IPITKRGAEKLKEELHRLKTVERPAVISAIAEARAQGDLSENAEYEAAKDRQGFIEGRIM 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A++ID S + +G R+ FGATV L ++++GD YQIVG+ EAD++ GL+++S
Sbjct: 64 EIEGKLSAAQIIDPSALDAGGRVVFGATVELEDEDTGDAVKYQIVGEDEADLKHGLINVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGKE GD V APGG + YE++ V +I
Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGVRRYEVVAVSYI 158
>gi|259415108|ref|ZP_05739030.1| transcription elongation factor GreA [Silicibacter sp. TrichCH4B]
gi|259349018|gb|EEW60772.1| transcription elongation factor GreA [Silicibacter sp. TrichCH4B]
Length = 156
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 122/156 (78%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T +GF ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MDKIPMTPQGFHALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +++ A+VID + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGVLSLADVIDPTKLSG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIARALIGKE GD + V PGG++ YEIL++++
Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGDRAYEILKIIY 155
>gi|91784541|ref|YP_559747.1| transcription elongation factor GreA [Burkholderia xenovorans
LB400]
gi|91688495|gb|ABE31695.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400]
Length = 176
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 113/159 (71%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+ +P+T +G + ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q E
Sbjct: 18 FMSTVPLTKRGAEMLRDELQRLKSVERPSVINSIAEARAQGDLSENAEYDAAKEKQGFIE 77
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+AE+E+ + A+VID + + D R+ FGATV L + NSG YQIVGD EAD+ GL
Sbjct: 78 GRIAEIESKLAGAQVIDPAAVEADGRVVFGATVELEDLNSGASVKYQIVGDDEADIDHGL 137
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SISSPIARALIGK GD+ SV APGG + YEI+ V ++
Sbjct: 138 ISISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 176
>gi|99078719|ref|YP_611977.1| transcription elongation factor GreA [Ruegeria sp. TM1040]
gi|99035857|gb|ABF62715.1| transcription elongation factor GreA [Ruegeria sp. TM1040]
Length = 156
Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 121/156 (77%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T +GF ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MDKIPMTPQGFHALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +++ A+VID S +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGVLSLADVIDPSKLSG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIARALIGKE GD + V PGG+++YEIL + +
Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGDRSYEILDITY 155
>gi|58582509|ref|YP_201525.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58427103|gb|AAW76140.1| transcriptional elongation factor [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 170
Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+
Sbjct: 14 RAPMTSKGALRLREELEQLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRI 73
Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+LE ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ GL++I
Sbjct: 74 KQLEGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAI 133
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSP+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 134 SSPLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 169
>gi|126728314|ref|ZP_01744130.1| transcription elongation factor GreA [Sagittula stellata E-37]
gi|126711279|gb|EBA10329.1| transcription elongation factor GreA [Sagittula stellata E-37]
Length = 156
Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 117/156 (75%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKI +T GF ++ EL+ + ERP II+AISEAR GDL ENAEY +A+E Q EG
Sbjct: 1 MDKILITRAGFTALEAELKQLKSVERPAIIQAISEARELGDLKENAEYHSAREKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++I AEVID +++SG + FGATV++V++++ ++K +QIVG+ EA ++ GL++
Sbjct: 61 RIKELESVIGLAEVIDPASLSGS-VKFGATVTVVDEDTDEEKTWQIVGEHEASIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIARALIGKE GD + V PGGEK+YEIL V +
Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGEKSYEILSVSY 155
>gi|84624395|ref|YP_451767.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|166711939|ref|ZP_02243146.1| transcription elongation factor GreA [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|84368335|dbj|BAE69493.1| transcription elongation factor greA [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 158
Score = 166 bits (420), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+
Sbjct: 2 RAPMTSKGALRLREELEQLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRI 61
Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+LE ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ GL++I
Sbjct: 62 KQLEGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAI 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSP+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 122 SSPLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 157
>gi|253997071|ref|YP_003049135.1| transcription elongation factor GreA [Methylotenera mobilis JLW8]
gi|253983750|gb|ACT48608.1| transcription elongation factor GreA [Methylotenera mobilis JLW8]
Length = 160
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + PVT +G + +++EL+ + +RP II+AI+EARA GDLSENAEY++AKE Q+ EG
Sbjct: 3 LSQFPVTVRGAELLKEELQRLRGVDRPNIIQAIAEARAQGDLSENAEYESAKERQSFIEG 62
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE ++ ++ID T++ + R+ FGATV++ + +SGD K YQIVG+ EAD+++G +
Sbjct: 63 RIAELEAKLSNLQIIDPQTLNAEGRVVFGATVNIEDLDSGDNKTYQIVGEDEADIKNGKI 122
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GDI V+APGG + YE+L VL+I
Sbjct: 123 SVSSPIARGLIGKSAGDIAEVSAPGGVREYEVLDVLYI 160
>gi|157826502|ref|YP_001495566.1| transcription elongation factor GreA [Rickettsia bellii OSU 85-389]
gi|229485905|sp|A8GUN3|GREA_RICB8 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|157801806|gb|ABV78529.1| transcription elongation factor GreA [Rickettsia bellii OSU 85-389]
Length = 161
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 113/154 (73%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +GF+K++ EL+ + ER ++ + I+EARA+GDLSENAEY+AA+E Q E R+
Sbjct: 3 KFPITDQGFEKLEHELKHLKHVERKKVSEDIAEARAHGDLSENAEYEAAREKQAFVEARI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LE+I RAE+I+++ +SGD I FGATV L++ + ++ Y IVG+ EAD+ VSI+
Sbjct: 63 KHLEDITARAEIINVAKLSGDSIKFGATVVLIDDETEEEVMYHIVGEYEADITKKRVSIA 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA+ALIGK +GDI+ V PGG K+YE++ + +
Sbjct: 123 SPIAKALIGKSVGDIVEVMTPGGVKSYEVVTIKY 156
>gi|323526828|ref|YP_004228981.1| transcription elongation factor GreA [Burkholderia sp. CCGE1001]
gi|323383830|gb|ADX55921.1| transcription elongation factor GreA [Burkholderia sp. CCGE1001]
Length = 158
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/155 (56%), Positives = 111/155 (71%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ + A+VID S + D R+ FGATV L + SG YQIVGD EAD+ GL+SIS
Sbjct: 64 EIESKLAGAQVIDPSQVEADGRVVFGATVELEDLESGASVKYQIVGDDEADIDHGLISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ SV APGG + YEI+ V ++
Sbjct: 124 SPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158
>gi|296158199|ref|ZP_06841031.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
gi|295891535|gb|EFG71321.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
Length = 158
Score = 165 bits (418), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+P+T +G + ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 VPLTKRGAEMLRDELQRLKSVERPSVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ + A+VID + + D R+ FGATV L + NSG YQIVGD EAD+ GL+SIS
Sbjct: 64 EIESKLAGAQVIDPAAVEADGRVVFGATVELEDLNSGASVKYQIVGDDEADIDHGLISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ SV APGG + YEI+ V ++
Sbjct: 124 SPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158
>gi|107022368|ref|YP_620695.1| transcription elongation factor GreA [Burkholderia cenocepacia AU
1054]
gi|116689315|ref|YP_834938.1| transcription elongation factor GreA [Burkholderia cenocepacia
HI2424]
gi|170732614|ref|YP_001764561.1| transcription elongation factor GreA [Burkholderia cenocepacia
MC0-3]
gi|206559640|ref|YP_002230401.1| transcription elongation factor GreA [Burkholderia cenocepacia
J2315]
gi|254245763|ref|ZP_04939084.1| Prokaryotic transcription elongation factor GreA [Burkholderia
cenocepacia PC184]
gi|254252705|ref|ZP_04946023.1| Prokaryotic transcription elongation factor GreA [Burkholderia
dolosa AUO158]
gi|105892557|gb|ABF75722.1| transcription elongation factor GreA [Burkholderia cenocepacia AU
1054]
gi|116647404|gb|ABK08045.1| transcription elongation factor GreA [Burkholderia cenocepacia
HI2424]
gi|124870539|gb|EAY62255.1| Prokaryotic transcription elongation factor GreA [Burkholderia
cenocepacia PC184]
gi|124895314|gb|EAY69194.1| Prokaryotic transcription elongation factor GreA [Burkholderia
dolosa AUO158]
gi|169815856|gb|ACA90439.1| transcription elongation factor GreA [Burkholderia cenocepacia
MC0-3]
gi|198035678|emb|CAR51565.1| transcription elongation factor [Burkholderia cenocepacia J2315]
gi|325525887|gb|EGD03598.1| transcription elongation factor GreA [Burkholderia sp. TJI49]
Length = 158
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE+ ++ A++ID + + D R+ F ATV L + SGD YQIVGD EAD+ GL+S+S
Sbjct: 64 ELESKLSAAQIIDPTVLDADGRVVFAATVELEDLESGDTVKYQIVGDDEADIDHGLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158
>gi|167562359|ref|ZP_02355275.1| transcription elongation factor GreA [Burkholderia oklahomensis
EO147]
gi|167574344|ref|ZP_02367218.1| transcription elongation factor GreA [Burkholderia oklahomensis
C6786]
Length = 158
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ ++ A++ID + + D R+ F ATV L + +G+ YQIVGD EAD+ GL+S+S
Sbjct: 64 EIESKLSAAQIIDPTAVDADGRVVFAATVELEDLETGNTVKYQIVGDDEADIDHGLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V AP G + YEI+ VL+I
Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVLYI 158
>gi|84683984|ref|ZP_01011886.1| Transcription elongation factor greA [Maritimibacter alkaliphilus
HTCC2654]
gi|84667737|gb|EAQ14205.1| Transcription elongation factor greA [Rhodobacterales bacterium
HTCC2654]
Length = 156
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 85/157 (54%), Positives = 117/157 (74%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KI +T G+ + EL+ + ERP +I AISEAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKILLTRAGYTALNDELKKLKSVERPAVIAAISEAREHGDLSENAEYHAAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+II AEVID + +SG I F ATV LV++++ ++K YQIVG+ EAD++ G ++
Sbjct: 61 RVKELESIIGLAEVIDPAKLSG-AIKFSATVKLVDEDTDEEKTYQIVGEPEADLEKGKLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARALIGKE GD + V PGGEK+YEIL++ +I
Sbjct: 120 IKSPLARALIGKEEGDSVEVRTPGGEKSYEILEIEYI 156
>gi|161525197|ref|YP_001580209.1| transcription elongation factor GreA [Burkholderia multivorans ATCC
17616]
gi|189350064|ref|YP_001945692.1| transcription elongation factor GreA [Burkholderia multivorans ATCC
17616]
gi|221201965|ref|ZP_03575001.1| transcription elongation factor GreA [Burkholderia multivorans
CGD2M]
gi|221204905|ref|ZP_03577922.1| transcription elongation factor GreA [Burkholderia multivorans
CGD2]
gi|221213882|ref|ZP_03586855.1| transcription elongation factor GreA [Burkholderia multivorans
CGD1]
gi|160342626|gb|ABX15712.1| transcription elongation factor GreA [Burkholderia multivorans ATCC
17616]
gi|189334086|dbj|BAG43156.1| transcription elongation factor [Burkholderia multivorans ATCC
17616]
gi|221166059|gb|EED98532.1| transcription elongation factor GreA [Burkholderia multivorans
CGD1]
gi|221175762|gb|EEE08192.1| transcription elongation factor GreA [Burkholderia multivorans
CGD2]
gi|221178048|gb|EEE10459.1| transcription elongation factor GreA [Burkholderia multivorans
CGD2M]
Length = 158
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE+ ++ A++ID + + D R+ F ATV L + SGD YQIVGD EAD+ GL+S+S
Sbjct: 64 ELESKLSAAQIIDPTVLEADGRVVFAATVELEDLESGDTVKYQIVGDDEADIDHGLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158
>gi|21231292|ref|NP_637209.1| transcription elongation factor GreA [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768656|ref|YP_243418.1| transcription elongation factor GreA [Xanthomonas campestris pv.
campestris str. 8004]
gi|188991526|ref|YP_001903536.1| transcription elongation factor GreA [Xanthomonas campestris pv.
campestris str. B100]
gi|25453015|sp|Q9L4D3|GREA_XANCP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|7228158|emb|CAB77041.1| putative transcriptional elongation factor [Xanthomonas campestris]
gi|21112945|gb|AAM41133.1| putative transcriptional elongation factor [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|66573988|gb|AAY49398.1| putative transcriptional elongation factor [Xanthomonas campestris
pv. campestris str. 8004]
gi|167733286|emb|CAP51485.1| transcriptional elongation factor [Xanthomonas campestris pv.
campestris]
Length = 158
Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+
Sbjct: 2 RAPMTSKGAQRLREELDHLKSVKRPAVITAIAEARAHGDLKENAEYHAAREQQSFIEGRI 61
Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+LE ++ AE+IDI+ ++ G +I FGATV+L + + ++K YQIVGD EAD++ GL++I
Sbjct: 62 KQLEGELSHAEIIDITKLAAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGLIAI 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSP+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 122 SSPLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 157
>gi|293607001|ref|ZP_06689345.1| transcription elongation factor GreA [Achromobacter piechaudii ATCC
43553]
gi|292814598|gb|EFF73735.1| transcription elongation factor GreA [Achromobacter piechaudii ATCC
43553]
Length = 158
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 115/155 (74%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +++Q+EL+ + ERP +I AI+EARA GDLSENAEY AA+E Q EGR+A
Sbjct: 4 IPLTVRGAERLQEELQRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE ++ A +ID +++ + R FGATV + + +SGD+ YQIVGD EAD+++ L+S+S
Sbjct: 64 ELEGTLSNAHLIDPTSLDAEGRAVFGATVDIEDLDSGDRVTYQIVGDVEADIKANLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARALIGK GD++ V AP G + YE+L V +I
Sbjct: 124 SPVARALIGKSEGDVVEVKAPAGVREYEVLGVRYI 158
>gi|153874961|ref|ZP_02002967.1| Prokaryotic transcription elongation factor GreA [Beggiatoa sp. PS]
gi|152068576|gb|EDN67034.1| Prokaryotic transcription elongation factor GreA [Beggiatoa sp. PS]
Length = 157
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T++G K++ EL + ERP++I+AI+EARA GDL ENAEY AA+E Q+ EGR+
Sbjct: 2 KSPMTTQGAQKLRDELHHLKTVERPKVIQAIAEARALGDLKENAEYHAAREQQSFIEGRI 61
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
ELE AE+IDI+ ++ + ++ FGATV+L+ + ++ YQIVGD EAD+++ L+SI
Sbjct: 62 MELETKFASAEIIDITKINANGKVVFGATVNLMNVETEEEVTYQIVGDDEADIKAHLISI 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSPIARALI KE G+I V APGG+K YEIL+V +I
Sbjct: 122 SSPIARALIKKEEGEIAVVQAPGGKKEYEILEVKYI 157
>gi|296136187|ref|YP_003643429.1| GreA/GreB family elongation factor [Thiomonas intermedia K12]
gi|295796309|gb|ADG31099.1| GreA/GreB family elongation factor [Thiomonas intermedia K12]
Length = 158
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/153 (54%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T KG ++++QEL + ERP +I+AI+EARA GDLSENAEY AA++ Q EGR+A+
Sbjct: 5 PMTRKGAEQLKQELHRLKTIERPAVIQAIAEARAQGDLSENAEYDAARDKQGFIEGRIAD 64
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E + A++ID S + D R+ FGATV L +++SGD+ YQIVGD EAD++ G +SI+S
Sbjct: 65 IEGKLGTAQIIDPSELRADGRVVFGATVELSDESSGDEITYQIVGDDEADLKQGRISINS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
PIARALIGKE GD+ V APGG + YEIL V +
Sbjct: 125 PIARALIGKESGDVAQVAAPGGVRQYEILAVHY 157
>gi|295677142|ref|YP_003605666.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
gi|295436985|gb|ADG16155.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
Length = 160
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 87/159 (54%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+ IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q E
Sbjct: 2 FMSTIPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIE 61
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+AE+E+ + A+VID S + D R+ FGAT+ L + SG YQIVGD EAD+ GL
Sbjct: 62 GRIAEIESKLAGAQVIDPSQVEADGRVVFGATLELEDLESGASVKYQIVGDDEADIDHGL 121
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SISSPIARALIGK GD+ SV APGG + YEI+ V +I
Sbjct: 122 ISISSPIARALIGKSEGDVASVQAPGGIREYEIIAVSYI 160
>gi|325925177|ref|ZP_08186590.1| transcription elongation factor GreA [Xanthomonas perforans 91-118]
gi|325544431|gb|EGD15801.1| transcription elongation factor GreA [Xanthomonas perforans 91-118]
Length = 154
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 118/153 (77%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L
Sbjct: 1 MTSKGAQRLREELEHLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E+ ++ AE+IDI+ +S G +I FGATV+L + + ++K YQIVGD EAD++ GL++ISSP
Sbjct: 61 ESELSHAEIIDITKLSAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 121 LARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 153
>gi|319944199|ref|ZP_08018475.1| transcription elongation factor GreA [Lautropia mirabilis ATCC
51599]
gi|319742494|gb|EFV94905.1| transcription elongation factor GreA [Lautropia mirabilis ATCC
51599]
Length = 159
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 83/158 (52%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M P+T G ++ EL+ + ERP +I AI+EARA GDLSENAEY++AKE Q+ E
Sbjct: 1 MATSFPLTKHGAQLLKDELQRLKSVERPNVINAIAEARAQGDLSENAEYESAKERQSFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+AELE ++ A++ID + + D R+ FGATV L + +SGDK YQIVG+ EAD++
Sbjct: 61 GRIAELEGKLSAAQIIDPAALDADGRVVFGATVQLEDIDSGDKVTYQIVGEDEADLKLSK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S++SP+ARALIGK GD+ S APGGE+ YEIL VL+
Sbjct: 121 ISVASPLARALIGKYAGDVASFQAPGGEREYEILDVLY 158
>gi|238026780|ref|YP_002911011.1| transcription elongation factor GreA [Burkholderia glumae BGR1]
gi|237875974|gb|ACR28307.1| Transcription elongation factor GreA [Burkholderia glumae BGR1]
Length = 158
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +++++EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGAEQLREELQRLKSIERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE+ ++ A++ID S + + R+ F ATV L + SGD YQIVGD EAD+ GL+S+S
Sbjct: 64 ELESKLSAAQIIDPSVLDAEGRVVFAATVELEDLESGDTVKYQIVGDDEADIDHGLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158
>gi|260576249|ref|ZP_05844241.1| transcription elongation factor GreA [Rhodobacter sp. SW2]
gi|259021517|gb|EEW24821.1| transcription elongation factor GreA [Rhodobacter sp. SW2]
Length = 151
Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/152 (51%), Positives = 116/152 (76%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T GF + EL+ + ERP +I+AI+EARA+GDLSENAEY AA+E Q+ EGR+ EL
Sbjct: 1 MTRGGFVALDDELKLLKSVERPAVIRAIAEARAHGDLSENAEYHAAREKQSFIEGRIKEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E II+RAEVID + +SG I FGATV+LV++++ +++ YQIVG+ EA+++ G ++I SP+
Sbjct: 61 EAIISRAEVIDPAKLSG-AIKFGATVTLVDEDTNEERTYQIVGEPEANIEGGFLNIRSPL 119
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARALIGK GD + V PGG+++YE+L + ++
Sbjct: 120 ARALIGKAEGDSVDVKTPGGQRSYEVLSIRFV 151
>gi|300691215|ref|YP_003752210.1| transcription elongation factor [Ralstonia solanacearum PSI07]
gi|299078275|emb|CBJ50923.1| transcription elongation factor [Ralstonia solanacearum PSI07]
Length = 158
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G + +++EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+
Sbjct: 4 IPITKRGAEMLKEELQRLKTKERPAVVTAIAEARAQGDLSENADYDAAKERQGFIEGRIQ 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ ++ A+VID +++ D RI FGAT+ L + +SG YQIVGD EAD+++G +SIS
Sbjct: 64 EIESKLSAAQVIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLETGKISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V APGGE+ YE+L V ++
Sbjct: 124 SPIARALIGKLEGDVATVIAPGGEREYEVLAVKYL 158
>gi|149927094|ref|ZP_01915352.1| transcription elongation factor GreA [Limnobacter sp. MED105]
gi|149824315|gb|EDM83535.1| transcription elongation factor GreA [Limnobacter sp. MED105]
Length = 158
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/155 (54%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T KG +K++QEL + +RP +I AISEARA GDLSENAEY AAKE Q EGR+
Sbjct: 4 IPLTVKGAEKLKQELHRLKTIDRPAVINAISEARAQGDLSENAEYDAAKEKQGFIEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A++ID + + + R+ FGATV L + +G YQIVGD EAD+++GL+SIS
Sbjct: 64 EIEGKMSNAQIIDPTNVDAEGRVVFGATVKLEDIEAGATVEYQIVGDDEADIKAGLISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ V APGG + YE+L+V +I
Sbjct: 124 SPIARALIGKYEGDVAHVQAPGGLREYEVLEVKYI 158
>gi|209517189|ref|ZP_03266034.1| transcription elongation factor GreA [Burkholderia sp. H160]
gi|209502325|gb|EEA02336.1| transcription elongation factor GreA [Burkholderia sp. H160]
Length = 158
Score = 164 bits (414), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/155 (55%), Positives = 111/155 (71%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ + A+VID S + D R+ FGAT+ L + SG YQIVGD EAD+ GL+SIS
Sbjct: 64 EIESKLAGAQVIDPSQVEADGRVVFGATLELEDLESGASVKYQIVGDDEADIDHGLISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ SV APGG + YEI+ V ++
Sbjct: 124 SPIARALIGKSEGDVASVQAPGGIREYEIIAVSYV 158
>gi|319763187|ref|YP_004127124.1| transcription elongation factor grea [Alicycliphilus denitrificans
BC]
gi|330825250|ref|YP_004388553.1| transcription elongation factor GreA [Alicycliphilus denitrificans
K601]
gi|317117748|gb|ADV00237.1| transcription elongation factor GreA [Alicycliphilus denitrificans
BC]
gi|329310622|gb|AEB85037.1| transcription elongation factor GreA [Alicycliphilus denitrificans
K601]
Length = 158
Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 116/155 (74%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G ++++QEL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EGR+
Sbjct: 4 IPITKRGAEQLKQELHRLKTVERPAVINAIAEARAQGDLSENAEYEAAKDRQGFIEGRIL 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A++ID S + +G R+ FGATV L +++SG+ YQIVG+ EAD++ GL+++S
Sbjct: 64 EIEGKLSAAQIIDPSELDAGGRVVFGATVELEDEDSGEAVRYQIVGEDEADLKHGLINVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGKE GD V APGG + YE++ V ++
Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGVRRYEVVSVSYV 158
>gi|134295356|ref|YP_001119091.1| transcription elongation factor GreA [Burkholderia vietnamiensis
G4]
gi|134138513|gb|ABO54256.1| transcription elongation factor GreA [Burkholderia vietnamiensis
G4]
Length = 158
Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ ++ A+VID + + + R+ F +TV L + SGD YQIVGD EAD+ GL+S+S
Sbjct: 64 EIESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V APGG + YEI+ V +I
Sbjct: 124 SPIARALIGKSEGDVAAVQAPGGVREYEIISVSYI 158
>gi|25453016|sp|Q9PEC0|GREA_XYLFA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
Length = 158
Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+
Sbjct: 2 RAPMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRI 61
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+LE ++ AEVID++ + +G +I FGATV+LV+ + ++ YQIVGD EAD++ GLV+I
Sbjct: 62 KQLEGELSHAEVIDVAKLNAGTKIVFGATVTLVDLETDEESRYQIVGDLEADIKQGLVAI 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSP+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 122 SSPVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157
>gi|86139026|ref|ZP_01057597.1| transcription elongation factor GreA [Roseobacter sp. MED193]
gi|85824257|gb|EAQ44461.1| transcription elongation factor GreA [Roseobacter sp. MED193]
Length = 156
Score = 164 bits (414), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 83/156 (53%), Positives = 118/156 (75%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+TS G ++ EL+ + ERP IIKAI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MEKIPMTSAGHTALEAELKNLKSVERPTIIKAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ A+VID + +SG I FGA V+LV++++ ++K +QIVG+ EA+V++GL++
Sbjct: 61 RIKELEGILSLADVIDPAKLSGS-IKFGAKVTLVDEDTDEEKTWQIVGEHEANVEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGKE GD + V PGG + YEIL + +
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGVRGYEILTIHY 155
>gi|311108151|ref|YP_003981004.1| transcription elongation factor GreA [Achromobacter xylosoxidans
A8]
gi|310762840|gb|ADP18289.1| transcription elongation factor GreA [Achromobacter xylosoxidans
A8]
Length = 232
Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +++Q+EL+ + ERP +I AI+EARA GDLSENAEY AA+E Q EGR+A
Sbjct: 78 IPLTVRGAERLQEELQRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEGRIA 137
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE ++ A +ID + + + R FGATV + + +SGD+ YQIVGD EAD++S L+S+S
Sbjct: 138 ELEGTLSNAHLIDPTALEAEGRAVFGATVDIEDLDSGDRVTYQIVGDVEADIKSNLISVS 197
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARALIGK GD++ V AP G + YE+L V +I
Sbjct: 198 SPVARALIGKSEGDVVEVVAPAGVREYEVLGVRYI 232
>gi|187924842|ref|YP_001896484.1| transcription elongation factor GreA [Burkholderia phytofirmans
PsJN]
gi|187716036|gb|ACD17260.1| transcription elongation factor GreA [Burkholderia phytofirmans
PsJN]
Length = 158
Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+P+T +G + ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 VPLTKRGAEMLRDELQRLKSVERPSVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ + A+VID + + D R+ FGATV L + +SG YQIVGD EAD+ GL+SIS
Sbjct: 64 EIESKLAGAQVIDPAAVEADGRVVFGATVELEDLDSGASVKYQIVGDDEADIDHGLISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ SV APGG + YEI+ V ++
Sbjct: 124 SPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158
>gi|241663320|ref|YP_002981680.1| transcription elongation factor GreA [Ralstonia pickettii 12D]
gi|309782465|ref|ZP_07677189.1| transcription elongation factor GreA [Ralstonia sp. 5_7_47FAA]
gi|240865347|gb|ACS63008.1| transcription elongation factor GreA [Ralstonia pickettii 12D]
gi|308918802|gb|EFP64475.1| transcription elongation factor GreA [Ralstonia sp. 5_7_47FAA]
Length = 158
Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 116/155 (74%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G + +++EL + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+
Sbjct: 4 IPITKRGAEMLKEELHRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEGRIQ 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ ++ A++ID +++ D R+ FGAT+ L + +SG YQIVGD EAD+++G +SIS
Sbjct: 64 EIESKLSAAQIIDPASLDADGRVVFGATIDLEDLDSGKPVTYQIVGDDEADLETGKISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V APGGE+ YE+L V ++
Sbjct: 124 SPIARALIGKFEGDVATVVAPGGEREYEVLAVKYL 158
>gi|121998553|ref|YP_001003340.1| transcription elongation factor GreA [Halorhodospira halophila SL1]
gi|166200666|sp|A1WXX6|GREA_HALHL RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|121589958|gb|ABM62538.1| transcription elongation factor GreA [Halorhodospira halophila SL1]
Length = 158
Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 119/157 (75%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G +K+++EL + E+RPR+I+AI+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MSKIPLTIRGAEKLREELHRLKHEDRPRVIQAIAEAREHGDLKENAEYHAAREQQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A++ID + + + +I FGATV+L + ++ + YQIVG+ EAD++ L+
Sbjct: 61 RIQEIEGKLSNAQIIDPAAVQAAPKIVFGATVALEDTDTEETVTYQIVGEDEADIKQHLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIARALIGKE GD V APGGE+TYEI++V +
Sbjct: 121 SVNSPIARALIGKEEGDEAVVQAPGGERTYEIVEVRY 157
>gi|226941818|ref|YP_002796892.1| GreA [Laribacter hongkongensis HLHK9]
gi|226716745|gb|ACO75883.1| GreA [Laribacter hongkongensis HLHK9]
Length = 158
Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 84/156 (53%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T G ++++ EL+ + RP +I AI+EAR++GDLSENAEY AAKE Q EGR+
Sbjct: 3 KVPLTRFGAEQLKAELQQLKSVARPEVIAAIAEARSHGDLSENAEYDAAKERQGFIEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
AELE ++ A+VID + + D RI FGATV L++ + D+ YQIVGD EAD++ G VS+
Sbjct: 63 AELEGKLSNAQVIDPADLDADGRIVFGATVELLDLETEDEVGYQIVGDDEADIKLGKVSV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIARALIGKE GD + V APGG + YE+L V +I
Sbjct: 123 NSPIARALIGKEAGDTVEVMAPGGIREYEVLDVKYI 158
>gi|221066104|ref|ZP_03542209.1| transcription elongation factor GreA [Comamonas testosteroni KF-1]
gi|220711127|gb|EED66495.1| transcription elongation factor GreA [Comamonas testosteroni KF-1]
Length = 158
Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K++ EL+ + +RP +I+AI+EARA GDLSENAEY++AKE Q EGR+
Sbjct: 4 IPITKRGAEKLKVELQRLKTVDRPAVIQAIAEARAQGDLSENAEYESAKEQQGFIEGRII 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A+VID + + +G R+ FGATV L +++SG YQIVG+ EAD++ GL+++S
Sbjct: 64 EVEGKLSAAQVIDPTELDAGGRVVFGATVDLEDEDSGSAVTYQIVGEDEADLKHGLINVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGKE GD V APGGE+ YEI+ V +I
Sbjct: 124 SPIARALIGKEEGDTAVVQAPGGERRYEIVGVKYI 158
>gi|260429205|ref|ZP_05783182.1| transcription elongation factor GreA [Citreicella sp. SE45]
gi|260419828|gb|EEX13081.1| transcription elongation factor GreA [Citreicella sp. SE45]
Length = 156
Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KI +T GF ++ EL+ + EERP +I+AI+EAR GDL ENAEY +A+E Q EG
Sbjct: 1 MEKILITRAGFTALETELKKLKSEERPAVIQAIAEARELGDLKENAEYHSAREKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E+I+ AEVID T+SG + FGATV +V++++ ++K +QIVG+ EA ++ GL++
Sbjct: 61 RIKEIESIMGLAEVIDPRTLSG-AVKFGATVKVVDEDTDEEKTWQIVGEHEASIERGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
I SPIARALIGKE GD + V PGGEK+YEIL +
Sbjct: 120 IKSPIARALIGKEAGDSVEVRTPGGEKSYEILSI 153
>gi|294340422|emb|CAZ88803.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Thiomonas sp. 3As]
Length = 157
Score = 163 bits (412), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 83/153 (54%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T KG ++++QEL + ERP +I+AI+EARA GDLSENAEY AA++ Q EGR+A+
Sbjct: 4 PMTRKGAEQLKQELHRLKTIERPAVIQAIAEARAQGDLSENAEYDAARDKQGFIEGRIAD 63
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E + A++ID S + D R+ FGATV L +++SGD+ YQIVGD EAD++ G +SI+S
Sbjct: 64 IEGKLGTAQIIDPSELQADGRVVFGATVELSDESSGDEITYQIVGDDEADLKQGRISINS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
PIARALIGKE G++ V APGG + YEIL V +
Sbjct: 124 PIARALIGKESGEVAQVAAPGGVRHYEILAVHY 156
>gi|258545601|ref|ZP_05705835.1| transcription elongation factor GreA [Cardiobacterium hominis ATCC
15826]
gi|258519153|gb|EEV88012.1| transcription elongation factor GreA [Cardiobacterium hominis ATCC
15826]
Length = 160
Score = 163 bits (412), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV KIP+T KG ++ EL + EERPR+I+AI+EARA+GDL ENAEY AA+E Q E
Sbjct: 1 MVAKIPMTKKGEQALRAELEKLKSEERPRVIEAIAEARAHGDLKENAEYHAAREQQGFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ ELE+ ++ A VID++T+ + ++ FG TV L + +SG++ Y+IVG+ EAD+++GL
Sbjct: 61 GRIRELEHKLSHANVIDVTTLPQNGKVVFGTTVELEDSDSGEEMTYKIVGEDEADIKAGL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S +SPIARAL+GKE G+ + V P G K EIL V +
Sbjct: 121 ISNTSPIARALLGKEEGETVEVVIPDGRKMLEILAVRY 158
>gi|115351223|ref|YP_773062.1| transcription elongation factor GreA [Burkholderia ambifaria AMMD]
gi|170697948|ref|ZP_02889031.1| transcription elongation factor GreA [Burkholderia ambifaria
IOP40-10]
gi|115281211|gb|ABI86728.1| transcription elongation factor GreA [Burkholderia ambifaria AMMD]
gi|170137114|gb|EDT05359.1| transcription elongation factor GreA [Burkholderia ambifaria
IOP40-10]
Length = 158
Score = 163 bits (412), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGAEQLRDELQRLKSVERPAVITAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE+ ++ A+VID + + + R+ F +TV L + SGD YQIVGD EAD+ GL+S+S
Sbjct: 64 ELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158
>gi|264679349|ref|YP_003279256.1| Kelongation factor GreA [Comamonas testosteroni CNB-2]
gi|299532308|ref|ZP_07045701.1| Kelongation factor GreA [Comamonas testosteroni S44]
gi|262209862|gb|ACY33960.1| Kelongation factor GreA [Comamonas testosteroni CNB-2]
gi|298719716|gb|EFI60680.1| Kelongation factor GreA [Comamonas testosteroni S44]
Length = 158
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K++ EL+ + +RP +I+AI+EARA GDLSENAEY++AKE Q EGR+
Sbjct: 4 IPITKRGAEKLKVELQRLKTVDRPAVIQAIAEARAQGDLSENAEYESAKEQQGFIEGRIL 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A+VID + + +G R+ FGATV L +++SG YQIVG+ EAD++ GL+++S
Sbjct: 64 EVEGKLSAAQVIDPTELDAGGRVVFGATVDLEDEDSGSPVTYQIVGEDEADLKHGLINVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGKE GD V APGGE+ YEI+ V ++
Sbjct: 124 SPIARALIGKEEGDTAVVQAPGGERRYEIVGVKYV 158
>gi|254197614|ref|ZP_04904036.1| transcription elongation factor GreA [Burkholderia pseudomallei
S13]
gi|169654355|gb|EDS87048.1| transcription elongation factor GreA [Burkholderia pseudomallei
S13]
Length = 158
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G D+++ EL+ + ERP II AI+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGADQLRDELQRLKSVERPAIINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ ++ A++ID +T+ D R+ F +TV L + +G K YQIVGD EAD+ GL+S+S
Sbjct: 64 EIESKLSAAQIIDPATLDTDGRVVFSSTVELEDLETGAKVKYQIVGDDEADLDHGLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V AP G + YEI+ V ++
Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVQFV 158
>gi|171318235|ref|ZP_02907398.1| transcription elongation factor GreA [Burkholderia ambifaria MEX-5]
gi|172060237|ref|YP_001807889.1| transcription elongation factor GreA [Burkholderia ambifaria
MC40-6]
gi|171096579|gb|EDT41473.1| transcription elongation factor GreA [Burkholderia ambifaria MEX-5]
gi|171992754|gb|ACB63673.1| transcription elongation factor GreA [Burkholderia ambifaria
MC40-6]
Length = 158
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE+ ++ A+VID + + + R+ F +TV L + SGD YQIVGD EAD+ GL+S+S
Sbjct: 64 ELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158
>gi|78065906|ref|YP_368675.1| transcription elongation factor GreA [Burkholderia sp. 383]
gi|77966651|gb|ABB08031.1| transcription elongation factor GreA [Burkholderia sp. 383]
Length = 158
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 111/155 (71%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G + ++ EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGAELLRDELQRLKSVERPAVINAISEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE+ ++ A+VID + + + R+ F +TV L + SGD YQIVGD EAD+ GL+S+S
Sbjct: 64 ELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158
>gi|302879460|ref|YP_003848024.1| transcription elongation factor GreA [Gallionella capsiferriformans
ES-2]
gi|302582249|gb|ADL56260.1| transcription elongation factor GreA [Gallionella capsiferriformans
ES-2]
Length = 158
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
KIP+T G DK++QEL + ERP +I AISEARA GDLSENAEY+AAK+ Q EGR+
Sbjct: 3 KIPLTLVGADKMRQELHKLKTVERPWVINAISEARAQGDLSENAEYEAAKDRQGFVEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
ELE + A++ID T++ + R FG+TV L E NSGD YQIVGD EAD+++ +SI
Sbjct: 63 IELEGKLGSAQIIDPKTLNANGRCVFGSTVILEEMNSGDVVTYQIVGDDEADIKARKISI 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSPIARALIGK GD+ V PGG + YE+++V +I
Sbjct: 123 SSPIARALIGKSSGDVAEVKTPGGIREYELIEVQYI 158
>gi|188575985|ref|YP_001912914.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|289663383|ref|ZP_06484964.1| transcription elongation factor GreA [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289668838|ref|ZP_06489913.1| transcription elongation factor GreA [Xanthomonas campestris pv.
musacearum NCPPB4381]
gi|188520437|gb|ACD58382.1| transcriptional elongation factor [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 154
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/153 (50%), Positives = 118/153 (77%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L
Sbjct: 1 MTSKGALRLREELEQLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ GL++ISSP
Sbjct: 61 EGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 121 LARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 153
>gi|126740555|ref|ZP_01756242.1| transcription elongation factor GreA [Roseobacter sp. SK209-2-6]
gi|126718356|gb|EBA15071.1| transcription elongation factor GreA [Roseobacter sp. SK209-2-6]
Length = 156
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MEKIPMTPAGHTAMESELKNLKSVERPSIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE II A+VID + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGIIGLADVIDPAKLSGS-IKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGK+ GD + V PGGE++YEIL++++
Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGERSYEILKIVY 155
>gi|254491388|ref|ZP_05104567.1| transcription elongation factor GreA subfamily [Methylophaga
thiooxidans DMS010]
gi|224462866|gb|EEF79136.1| transcription elongation factor GreA subfamily [Methylophaga
thiooxydans DMS010]
Length = 158
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+P+TS+G + ++ EL+ + RP ++ AISEARA+GDL ENAEY AAKE Q+ EGR+
Sbjct: 3 VPITSRGAEALKHELKELKSVARPTVVAAISEARAHGDLKENAEYHAAKEQQSFIEGRIQ 62
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE +++ A+VID +++ D R+ FG TVSL+ ++ ++K YQIVGD E+D++ +S+S
Sbjct: 63 ELEGVLSNAQVIDPASLPQDGRVVFGVTVSLLNIDTDEEKAYQIVGDYESDIKLNRISVS 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALIGKE+ DI +V APGG YEI+++ +
Sbjct: 123 SPIARALIGKEIDDIATVQAPGGNIEYEIIEISY 156
>gi|120611280|ref|YP_970958.1| transcription elongation factor GreA [Acidovorax citrulli AAC00-1]
gi|120589744|gb|ABM33184.1| transcription elongation factor GreA [Acidovorax citrulli AAC00-1]
Length = 158
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/154 (53%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EGR+
Sbjct: 4 IPITKRGAEKLKEELHRLKTVERPAVINAIAEARAQGDLSENAEYEAAKDRQGFIEGRIQ 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A+VID + + +G R+ FGATV L ++ SGD YQIVG+ EAD++ GL+++S
Sbjct: 64 EVEGKLSAAQVIDPAQLDAGGRVVFGATVDLEDEESGDLVTYQIVGEDEADLKQGLINVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALIGKE GD V APGG + YE++ V +
Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGLRRYEVVAVRY 157
>gi|53718991|ref|YP_107977.1| transcription elongation factor GreA [Burkholderia pseudomallei
K96243]
gi|53725562|ref|YP_102536.1| transcription elongation factor GreA [Burkholderia mallei ATCC
23344]
gi|67639733|ref|ZP_00438570.1| transcription elongation factor GreA [Burkholderia mallei GB8 horse
4]
gi|76811771|ref|YP_333015.1| transcription elongation factor GreA [Burkholderia pseudomallei
1710b]
gi|121601156|ref|YP_992619.1| transcription elongation factor GreA [Burkholderia mallei SAVP1]
gi|124384628|ref|YP_001026579.1| transcription elongation factor GreA [Burkholderia mallei NCTC
10229]
gi|126439860|ref|YP_001058521.1| transcription elongation factor GreA [Burkholderia pseudomallei
668]
gi|126448841|ref|YP_001080136.1| transcription elongation factor GreA [Burkholderia mallei NCTC
10247]
gi|126451730|ref|YP_001065781.1| transcription elongation factor GreA [Burkholderia pseudomallei
1106a]
gi|134282748|ref|ZP_01769451.1| transcription elongation factor GreA [Burkholderia pseudomallei
305]
gi|167002793|ref|ZP_02268583.1| transcription elongation factor GreA [Burkholderia mallei PRL-20]
gi|167719061|ref|ZP_02402297.1| transcription elongation factor GreA [Burkholderia pseudomallei
DM98]
gi|167738059|ref|ZP_02410833.1| transcription elongation factor GreA [Burkholderia pseudomallei 14]
gi|167815243|ref|ZP_02446923.1| transcription elongation factor GreA [Burkholderia pseudomallei 91]
gi|167823652|ref|ZP_02455123.1| transcription elongation factor GreA [Burkholderia pseudomallei 9]
gi|167845196|ref|ZP_02470704.1| transcription elongation factor GreA [Burkholderia pseudomallei
B7210]
gi|167893747|ref|ZP_02481149.1| transcription elongation factor GreA [Burkholderia pseudomallei
7894]
gi|167902197|ref|ZP_02489402.1| transcription elongation factor GreA [Burkholderia pseudomallei
NCTC 13177]
gi|167910439|ref|ZP_02497530.1| transcription elongation factor GreA [Burkholderia pseudomallei
112]
gi|167918464|ref|ZP_02505555.1| transcription elongation factor GreA [Burkholderia pseudomallei
BCC215]
gi|217423500|ref|ZP_03455001.1| transcription elongation factor GreA [Burkholderia pseudomallei
576]
gi|226196142|ref|ZP_03791727.1| transcription elongation factor GreA [Burkholderia pseudomallei
Pakistan 9]
gi|237811774|ref|YP_002896225.1| transcription elongation factor GreA [Burkholderia pseudomallei
MSHR346]
gi|242317287|ref|ZP_04816303.1| transcription elongation factor GreA [Burkholderia pseudomallei
1106b]
gi|254177940|ref|ZP_04884595.1| transcription elongation factor GreA [Burkholderia mallei ATCC
10399]
gi|254180206|ref|ZP_04886805.1| transcription elongation factor GreA [Burkholderia pseudomallei
1655]
gi|254188375|ref|ZP_04894886.1| transcription elongation factor GreA [Burkholderia pseudomallei
Pasteur 52237]
gi|254199447|ref|ZP_04905813.1| transcription elongation factor GreA [Burkholderia mallei FMH]
gi|254205760|ref|ZP_04912112.1| transcription elongation factor GreA [Burkholderia mallei JHU]
gi|254259727|ref|ZP_04950781.1| transcription elongation factor GreA [Burkholderia pseudomallei
1710a]
gi|254298040|ref|ZP_04965493.1| transcription elongation factor GreA [Burkholderia pseudomallei
406e]
gi|254358839|ref|ZP_04975112.1| transcription elongation factor GreA [Burkholderia mallei
2002721280]
gi|52209405|emb|CAH35350.1| transcription elongation factor [Burkholderia pseudomallei K96243]
gi|52428985|gb|AAU49578.1| transcription elongation factor GreA [Burkholderia mallei ATCC
23344]
gi|76581224|gb|ABA50699.1| transcription elongation factor GreA [Burkholderia pseudomallei
1710b]
gi|121229966|gb|ABM52484.1| transcription elongation factor GreA [Burkholderia mallei SAVP1]
gi|124292648|gb|ABN01917.1| transcription elongation factor GreA [Burkholderia mallei NCTC
10229]
gi|126219353|gb|ABN82859.1| transcription elongation factor GreA [Burkholderia pseudomallei
668]
gi|126225372|gb|ABN88912.1| transcription elongation factor GreA [Burkholderia pseudomallei
1106a]
gi|126241711|gb|ABO04804.1| transcription elongation factor GreA [Burkholderia mallei NCTC
10247]
gi|134245834|gb|EBA45925.1| transcription elongation factor GreA [Burkholderia pseudomallei
305]
gi|147749043|gb|EDK56117.1| transcription elongation factor GreA [Burkholderia mallei FMH]
gi|147753203|gb|EDK60268.1| transcription elongation factor GreA [Burkholderia mallei JHU]
gi|148027966|gb|EDK85987.1| transcription elongation factor GreA [Burkholderia mallei
2002721280]
gi|157807730|gb|EDO84900.1| transcription elongation factor GreA [Burkholderia pseudomallei
406e]
gi|157936054|gb|EDO91724.1| transcription elongation factor GreA [Burkholderia pseudomallei
Pasteur 52237]
gi|160698979|gb|EDP88949.1| transcription elongation factor GreA [Burkholderia mallei ATCC
10399]
gi|184210746|gb|EDU07789.1| transcription elongation factor GreA [Burkholderia pseudomallei
1655]
gi|217393358|gb|EEC33379.1| transcription elongation factor GreA [Burkholderia pseudomallei
576]
gi|225931728|gb|EEH27730.1| transcription elongation factor GreA [Burkholderia pseudomallei
Pakistan 9]
gi|237503724|gb|ACQ96042.1| transcription elongation factor GreA [Burkholderia pseudomallei
MSHR346]
gi|238520332|gb|EEP83793.1| transcription elongation factor GreA [Burkholderia mallei GB8 horse
4]
gi|242140526|gb|EES26928.1| transcription elongation factor GreA [Burkholderia pseudomallei
1106b]
gi|243061554|gb|EES43740.1| transcription elongation factor GreA [Burkholderia mallei PRL-20]
gi|254218416|gb|EET07800.1| transcription elongation factor GreA [Burkholderia pseudomallei
1710a]
Length = 158
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ ++ A++ID +T+ D R+ F +TV L + +G K YQIVGD EAD+ GL+S+S
Sbjct: 64 EIESKLSAAQIIDPATLDTDGRVVFSSTVELEDLETGAKVKYQIVGDDEADLDHGLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V AP G + YEI+ V ++
Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVQFV 158
>gi|187477431|ref|YP_785455.1| transcription elongation factor [Bordetella avium 197N]
gi|115422017|emb|CAJ48539.1| transcription elongation factor [Bordetella avium 197N]
Length = 158
Score = 162 bits (410), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 111/155 (71%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +++ QEL + ERP +I AI+EARA GDLSENAEY AA+E Q EGR+A
Sbjct: 4 IPLTVRGAERLNQELHRLKTIERPAVINAIAEARAQGDLSENAEYDAARERQAFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE ++ A +ID S + + R FGATV + + SGD+ YQIVGD EAD++S L+S+S
Sbjct: 64 ELEGTLSNAHLIDPSALDAEGRAVFGATVEIEDLGSGDRLTYQIVGDVEADIKSNLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARALIGK GD++ V AP G + YE++ V ++
Sbjct: 124 SPVARALIGKSEGDVVEVKAPAGLREYEVIGVRYL 158
>gi|171059502|ref|YP_001791851.1| transcription elongation factor GreA [Leptothrix cholodnii SP-6]
gi|170776947|gb|ACB35086.1| transcription elongation factor GreA [Leptothrix cholodnii SP-6]
Length = 158
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 115/155 (74%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G + +++EL+ + ERP +I AI+EARA GDLSENAEY+AAK+ Q EGR+
Sbjct: 4 IPLTKRGAELLKEELQRLKTIERPWVINAIAEARAQGDLSENAEYEAAKDKQGFIEGRIL 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E + A+VID + + +G R+ FGATV L E+ SGD YQIVG+ EAD++ GLVS+
Sbjct: 64 DVEGKLAIAQVIDPAVLDAGGRVVFGATVDLEEEESGDAVTYQIVGEDEADLKKGLVSVG 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGKE GD+ V APGG K YE+++V ++
Sbjct: 124 SPIARALIGKEAGDVAEVQAPGGVKRYEVVEVRYV 158
>gi|237745681|ref|ZP_04576161.1| GreA transcription elongation factor [Oxalobacter formigenes
HOxBLS]
gi|229377032|gb|EEO27123.1| GreA transcription elongation factor [Oxalobacter formigenes
HOxBLS]
Length = 158
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 118/155 (76%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IPVT +G +++EL + ++R +I AI+EAR++GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPVTVRGAQMMREELHRLKTKDRYEVIAAIAEARSHGDLSENAEYDAAKERQAFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE ++ A+VID +T++ + RI F ATV+L + +G+K +YQIVG+ EAD++ +SI+
Sbjct: 64 ELETKLSSAQVIDPTTLNTNGRIVFAATVALEDLETGEKVSYQIVGNDEADLKELKISIT 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARALIG+E GD++ VNAP G + YEIL+VL+I
Sbjct: 124 SPLARALIGREAGDVVEVNAPAGIREYEILEVLFI 158
>gi|325578454|ref|ZP_08148589.1| transcription elongation factor GreA [Haemophilus parainfluenzae
ATCC 33392]
gi|325160190|gb|EGC72319.1| transcription elongation factor GreA [Haemophilus parainfluenzae
ATCC 33392]
Length = 158
Score = 162 bits (410), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G + ++QEL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAELLRQELDFLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E+ + +VID++ + + ++ FGATV LV ++ ++ YQIVGD EAD++SGL+S+
Sbjct: 63 QEIESKLANCQVIDVTKLPNNGKVIFGATVVLVNTDTDEEVTYQIVGDDEADIKSGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GKEL D +++ PGG +EI++V +I
Sbjct: 123 NSPIARGLVGKELDDTVNITTPGGAVEFEIIEVNYI 158
>gi|33593266|ref|NP_880910.1| transcription elongation factor [Bordetella pertussis Tohama I]
gi|33596678|ref|NP_884321.1| transcription elongation factor [Bordetella parapertussis 12822]
gi|33600442|ref|NP_888002.1| transcription elongation factor [Bordetella bronchiseptica RB50]
gi|29603208|emb|CAC79553.1| transcription elongation factor [Bordetella pertussis Tohama I]
gi|33563641|emb|CAE42542.1| transcription elongation factor [Bordetella pertussis Tohama I]
gi|33568041|emb|CAE31954.1| transcription elongation factor [Bordetella bronchiseptica RB50]
gi|33573379|emb|CAE37363.1| transcription elongation factor [Bordetella parapertussis]
gi|332382675|gb|AEE67522.1| transcription elongation factor [Bordetella pertussis CS]
Length = 158
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +++QQEL + ERP +I AI+EARA GDLSENAEY AA+E Q EGR++
Sbjct: 4 IPLTVRGAERLQQELHRLKTVERPAVISAIAEARAQGDLSENAEYDAARERQGFIEGRIS 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE ++ A +ID + + + R FGATV + + +SGD+ YQIVGD EAD++S L+S+S
Sbjct: 64 ELEGTLSNAHLIDPTALDAEGRAVFGATVEIEDLDSGDRLTYQIVGDVEADIKSNLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARALIGK GD++ V P G + YE++ V ++
Sbjct: 124 SPVARALIGKSEGDVVEVKVPAGVREYEVIGVRYL 158
>gi|218660639|ref|ZP_03516569.1| transcription elongation factor GreA [Rhizobium etli IE4771]
Length = 119
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/115 (66%), Positives = 96/115 (83%)
Query: 43 LSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK 102
ENAEY AAKE Q+ NEGR++EL+++ RAEVID++ MSGD+I FGA V LV++++ ++
Sbjct: 4 FPENAEYHAAKEAQSHNEGRISELKDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEE 63
Query: 103 KNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
K YQIVGDQEADV++G +SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 64 KTYQIVGDQEADVKAGRISISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 118
>gi|238918415|ref|YP_002931929.1| hypothetical protein NT01EI_0456 [Edwardsiella ictaluri 93-146]
gi|238867983|gb|ACR67694.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 158
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +K+++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGAEKLREELDFLKGTRRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M + R+ FG+TVS+ N+ D++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMPNNGRVIFGSTVSVENLNTEDQQTYRIVGDDEADFKHNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE GD++++ PGGE YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEEGDVVTIKTPGGEVEYEILNVEYL 158
>gi|225023997|ref|ZP_03713189.1| hypothetical protein EIKCOROL_00864 [Eikenella corrodens ATCC
23834]
gi|224943022|gb|EEG24231.1| hypothetical protein EIKCOROL_00864 [Eikenella corrodens ATCC
23834]
Length = 162
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/159 (51%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ KIP+T +G + ++QEL+ + ERP II+AI+EAR +GDLSENAEY+AAKE Q E
Sbjct: 4 IMQKIPLTVRGAELLKQELQHLKSVERPAIIEAIAEARTHGDLSENAEYEAAKEKQGFIE 63
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR++ELEN ++ A +ID + + + +I FG TV L + + + YQIVGD EAD++
Sbjct: 64 GRISELENKLSAAHIIDPTEIHAEGKIVFGCTVVLEDLENETQVRYQIVGDDEADIKDNK 123
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SISSPI+RALIGKE GD+ V APGG + YE+++VL+I
Sbjct: 124 ISISSPISRALIGKEEGDVAEVQAPGGIREYEVIEVLYI 162
>gi|94311130|ref|YP_584340.1| transcription elongation factor GreA [Cupriavidus metallidurans
CH34]
gi|93354982|gb|ABF09071.1| transcription elongation factor [Cupriavidus metallidurans CH34]
Length = 173
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/155 (55%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G + +++EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EGR+
Sbjct: 19 IPITKRGAELLKEELQRLKAVERPAVINAISEARAQGDLSENAEYDAAKEKQAFIEGRIL 78
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A+VID + + D RI FGATV L E SG+ +YQIVGD EAD+ +G +S+S
Sbjct: 79 EVEAKLSAAQVIDPTQLDTDGRIVFGATVDLEELESGNPVSYQIVGDDEADLDTGKISVS 138
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ V APGGE+ YE++ V +I
Sbjct: 139 SPIARALIGKFEGDVAVVLAPGGEREYEVITVRYI 173
>gi|253991511|ref|YP_003042867.1| transcription elongation factor GreA [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|211638389|emb|CAR67011.1| transcription elongation factor grea (transcript cleavage facto
grea) [Photorhabdus asymbiotica subsp. asymbiotica ATCC
43949]
gi|253782961|emb|CAQ86126.1| transcription elongation factor grea (transcript cleavage facto
grea) [Photorhabdus asymbiotica]
Length = 158
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G DK+++EL + + RP+II I+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGADKLREELDYLKNVRRPKIISDIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VID++ M R+ FGATV+ + N+ +++ Y+IVGD EAD++ L+S+
Sbjct: 63 QEIEAKLSNAQVIDVTKMPKTGRVIFGATVTALNVNTDEEQTYRIVGDDEADIKENLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ DI+++ PGGE YEIL+V +I
Sbjct: 123 NSPIARGLIGKEVDDIVTIKTPGGEVEYEILKVEYI 158
>gi|73541862|ref|YP_296382.1| transcription elongation factor GreA [Ralstonia eutropha JMP134]
gi|72119275|gb|AAZ61538.1| transcription elongation factor GreA [Ralstonia eutropha JMP134]
Length = 158
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G + +++EL + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+
Sbjct: 4 IPITKRGAELLKEELHRLKAVERPAVINAIAEARAQGDLSENAEYDAAKEKQAFIEGRIL 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ ++ A+VID + + D RI FGATV L + SG +YQIVGD EAD+ SG +S+S
Sbjct: 64 EVESKLSAAQVIDPTQLDTDGRIVFGATVDLEDLESGSPVSYQIVGDDEADLDSGKISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V APGGE+ YE++ V ++
Sbjct: 124 SPIARALIGKFEGDVATVLAPGGEREYEVITVRYV 158
>gi|71897683|ref|ZP_00679928.1| Prokaryotic transcription elongation factor GreA [Xylella
fastidiosa Ann-1]
gi|71732586|gb|EAO34639.1| Prokaryotic transcription elongation factor GreA [Xylella
fastidiosa Ann-1]
Length = 158
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+
Sbjct: 2 RAPMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRI 61
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+LE ++ AEVID++ + +G +I FGATV+L + + ++ YQIVGD EAD++ GLV+I
Sbjct: 62 KQLEGELSHAEVIDVAKLNAGTKIVFGATVTLADLETDEESRYQIVGDLEADIKQGLVAI 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSP+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 122 SSPVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157
>gi|163738891|ref|ZP_02146304.1| transcription elongation factor GreA [Phaeobacter gallaeciensis
BS107]
gi|163741863|ref|ZP_02149253.1| transcription elongation factor GreA [Phaeobacter gallaeciensis
2.10]
gi|161385036|gb|EDQ09415.1| transcription elongation factor GreA [Phaeobacter gallaeciensis
2.10]
gi|161387696|gb|EDQ12052.1| transcription elongation factor GreA [Phaeobacter gallaeciensis
BS107]
Length = 156
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ EL+ + ERP IIKAI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MEKIPMTPTGHAALETELKTLKSVERPAIIKAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ A+VI+ + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGILSLADVINPAKLSG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGKE GD + V PGG++ YEIL++++
Sbjct: 120 IRSPIARALIGKEEGDSVEVRTPGGDRAYEILKIIY 155
>gi|28198317|ref|NP_778631.1| transcription elongation factor GreA [Xylella fastidiosa Temecula1]
gi|182680956|ref|YP_001829116.1| transcription elongation factor GreA [Xylella fastidiosa M23]
gi|32129572|sp|Q87EB7|GREA_XYLFT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238691084|sp|B2I844|GREA_XYLF2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|28056387|gb|AAO28280.1| transcriptional elongation factor [Xylella fastidiosa Temecula1]
gi|182631066|gb|ACB91842.1| transcription elongation factor GreA [Xylella fastidiosa M23]
Length = 158
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+
Sbjct: 2 RAPMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRI 61
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+LE ++ AEVID++ + +G +I FGATV+L + + ++ YQIVGD EAD++ GLV+I
Sbjct: 62 KQLEGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDEESRYQIVGDLEADIKQGLVAI 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSP+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 122 SSPVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157
>gi|326317398|ref|YP_004235070.1| transcription elongation factor GreA [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323374234|gb|ADX46503.1| transcription elongation factor GreA [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 158
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EGR+
Sbjct: 4 IPITKRGAEKLKEELHRLKTVERPAVINAIAEARAQGDLSENAEYEAAKDRQGFIEGRIQ 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A+VID + + +G ++ FGATV L ++ SGD YQIVG+ EAD++ GL+++S
Sbjct: 64 EVEGKLSAAQVIDPAQLDAGGKVVFGATVDLEDEESGDPVTYQIVGEDEADLKQGLINVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALIGKE GD V APGG + YE++ V +
Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGLRRYEVVAVRY 157
>gi|37528357|ref|NP_931702.1| transcription elongation factor GreA [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36787795|emb|CAE16910.1| transcription elongation factor greA (transcript cleavage factor)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 158
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G DK+++EL + + RP+II I+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGADKLREELDYLKNVRRPKIISDIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VID++ M G R+ FG TV+++ N+ +++ Y+IVGD EAD++ L+S+
Sbjct: 63 QEIEAKLSNAQVIDVTKMPKGGRVIFGTTVTVLNVNTDEEQTYRIVGDDEADIKENLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D++ + PGGE YEIL+V +I
Sbjct: 123 NSPIARGLIGKEVDDVVIIKTPGGEVEYEILKVEYI 158
>gi|91775133|ref|YP_544889.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
gi|91709120|gb|ABE49048.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
Length = 158
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T KG + ++ EL+ + +RP +I+AI+EARA GDLSENAEY AAKE Q+ EG
Sbjct: 1 MNQIPITVKGAELLKAELQRLRSVDRPAVIQAIAEARAQGDLSENAEYDAAKERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E ++ A +ID +T++ + R FGATV + + +SG+ YQIVGD EAD++SG +
Sbjct: 61 RIAEIEAKLSNAMIIDPATLNAEGRCVFGATVEVEDLDSGEVSTYQIVGDDEADIKSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SPIARALIGK GD+ V APGG ++YEIL V +I
Sbjct: 121 SIGSPIARALIGKVEGDVAEVVAPGGLRSYEILSVKYI 158
>gi|194290079|ref|YP_002005986.1| transcription elongation factor grea [Cupriavidus taiwanensis LMG
19424]
gi|193223914|emb|CAQ69923.1| transcription elongation factor [Cupriavidus taiwanensis LMG 19424]
Length = 158
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G + +++EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EGR+
Sbjct: 4 IPITKRGAELLKEELQRLKAVERPAVINAISEARAQGDLSENAEYDAAKEKQAFIEGRIL 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A++ID + + D RI FGATV L + SG +YQIVGD EAD+++G +S+S
Sbjct: 64 EVEAKLSAAQIIDPTQLDTDGRIVFGATVDLEDLESGSPVSYQIVGDDEADLEAGKISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V APGGE+ YE++ V +I
Sbjct: 124 SPIARALIGKFEGDVATVLAPGGEREYEVITVRYI 158
>gi|310815067|ref|YP_003963031.1| transcription elongation factor GreA [Ketogulonicigenium vulgare
Y25]
gi|308753802|gb|ADO41731.1| transcription elongation factor GreA [Ketogulonicigenium vulgare
Y25]
Length = 156
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 123/156 (78%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GFDK+ EL+ + ERP II AI+EARA+GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPLTRTGFDKLDVELKHLKSVERPAIIAAIAEARAHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ AEVID S +SG I FGA V+LV++++ ++K YQIVG+ EADV++G ++
Sbjct: 61 RIKELEGVISLAEVIDTSRLSG-TIKFGAMVTLVDEDTDEEKAYQIVGEYEADVENGRLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALIGK++GD + V PGG+++YE+L +++
Sbjct: 120 IKSPLARALIGKDVGDSVEVRTPGGDRSYEVLNIVY 155
>gi|255020830|ref|ZP_05292886.1| Transcription elongation factor GreA [Acidithiobacillus caldus ATCC
51756]
gi|254969621|gb|EET27127.1| Transcription elongation factor GreA [Acidithiobacillus caldus ATCC
51756]
Length = 158
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 115/159 (72%), Gaps = 2/159 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DKIP+T G ++++EL+ + ++RP +I+AI+EARA GDLSENAEY AAKE Q E
Sbjct: 1 MSDKIPMTVVGAQRLREELQRLKSQDRPAVIEAIAEARAKGDLSENAEYDAAKEQQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E+ + RA++ID +++ D RI FGATV L E + G YQIVGD EAD++
Sbjct: 61 GRIREIEDFLARAQIIDPRSLNTDGRIVFGATVEL-EDSDGKAITYQIVGDAEADIKENK 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SISSP+ARALIGK GD + VNAPGG + Y IL V ++
Sbjct: 120 ISISSPLARALIGKHEGDSVEVNAPGGIREYSILGVRYL 158
>gi|83747766|ref|ZP_00944800.1| Transcription elongation factor greA (transcription cleavage
factor) [Ralstonia solanacearum UW551]
gi|83725538|gb|EAP72682.1| Transcription elongation factor greA (transcription cleavage
factor) [Ralstonia solanacearum UW551]
Length = 158
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G + +++EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+
Sbjct: 4 IPITKRGAEMLKEELQRLKTKERPAVVTAIAEARAQGDLSENADYDAAKERQGFIEGRIL 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ + A+VID +++ D RI FGAT+ L + +SG YQIVGD EAD+ +G +SIS
Sbjct: 64 EIESKLAAAQVIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDTGKISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V APGGE+ YE+ V ++
Sbjct: 124 SPIARALIGKYEGDVATVVAPGGEREYEVRSVKYL 158
>gi|254476447|ref|ZP_05089833.1| transcription elongation factor GreA [Ruegeria sp. R11]
gi|214030690|gb|EEB71525.1| transcription elongation factor GreA [Ruegeria sp. R11]
Length = 156
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MEKIPMTPTGHAALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ A+VI+ + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGILSLADVINPAKLSGS-IKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGKE GD + V PGGE++YEIL +++
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGERSYEILTIVY 155
>gi|30249624|ref|NP_841694.1| transcription elongation factor GreA/GreB [Nitrosomonas europaea
ATCC 19718]
gi|30138987|emb|CAD85571.1| Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas
europaea ATCC 19718]
Length = 173
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 82/159 (51%), Positives = 113/159 (71%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+++ IP+T G +K++ EL + RP +I AI+EAR++GDLSENAEY AAKE Q E
Sbjct: 15 VMNAIPITQAGAEKLRAELHEMKTVHRPAVIAAIAEARSHGDLSENAEYDAAKERQGFIE 74
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+AELE+ ++ A++I+ +T++ D FGAT+ L++ + YQIVGD EAD++ G
Sbjct: 75 GRIAELESKLSNAQIINPATLNADGACVFGATIDLMDLGNNTTVTYQIVGDDEADIKQGK 134
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SISSPIARALIGK GDI V APGG + YEIL V +I
Sbjct: 135 ISISSPIARALIGKYAGDIAEVQAPGGVREYEILDVKYI 173
>gi|297539177|ref|YP_003674946.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
gi|297258524|gb|ADI30369.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
Length = 160
Score = 161 bits (407), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V +IPVT KG +++++EL + +RP +I+AI+EARA GDLSENAEY+AAKE Q+ EG
Sbjct: 3 VTQIPVTVKGAEQLKEELLRLRSVDRPWVIQAIAEARAQGDLSENAEYEAAKERQSFIEG 62
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E ++ A +ID ST+ D R FG+TV + + +SG YQIVGD EAD+++G +
Sbjct: 63 RIAEVEAKLSNAMIIDPSTLHADGRCVFGSTVRIEDLDSGSIITYQIVGDDEADIKNGKI 122
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPI+R LIGK GD+ V APGG K YEIL+V +I
Sbjct: 123 SVSSPISRGLIGKSEGDVAEVMAPGGVKEYEILEVQYI 160
>gi|301156348|emb|CBW15819.1| transcription elongation factor [Haemophilus parainfluenzae T3T1]
Length = 158
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G + +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAELLREELDFLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + +VID++ + + ++ FGATV LV ++ ++ YQIVGD EAD++SGL+S+
Sbjct: 63 QEIEGKLANCQVIDVTKLPNNGKVIFGATVVLVNTDTDEEVTYQIVGDDEADIKSGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKEL D +++ PGG +EI++V +I
Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGTVEFEIIEVNYI 158
>gi|291287665|ref|YP_003504481.1| transcription elongation factor GreA [Denitrovibrio acetiphilus DSM
12809]
gi|290884825|gb|ADD68525.1| transcription elongation factor GreA [Denitrovibrio acetiphilus DSM
12809]
Length = 157
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 119/156 (76%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+IP+T++G+ ++++EL + +R I+ AI+EAR++GDLSENAEY AAKE Q + E
Sbjct: 1 MDRIPITTEGYARLKKELEKLKTIDRKEIVAAIAEARSHGDLSENAEYDAAKERQGMIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ + R +VID ++SGD+I FGATV++ + ++KNY+IVG EA++ +G +S
Sbjct: 61 RIAELESKMGRFQVIDTKSLSGDKIVFGATVTIENIETEEQKNYKIVGPDEANISNGTIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ K++GD + V APGGE YE+L+V +
Sbjct: 121 IMSPLARALVNKKVGDEVLVVAPGGELEYEVLEVKF 156
>gi|289207885|ref|YP_003459951.1| transcription elongation factor GreA [Thioalkalivibrio sp. K90mix]
gi|288943516|gb|ADC71215.1| transcription elongation factor GreA [Thioalkalivibrio sp. K90mix]
Length = 159
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T G +K++ EL+ + E+RPR++ AI+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MNKTPLTVTGAEKMKAELKKLKGEDRPRVVNAIAEAREHGDLKENAEYHAAREQQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE ++ A++ID++ + ++ FG TV L G + Y+IVG+ EAD++ ++
Sbjct: 61 RIRELEGKLSNAQIIDVTALPQTGKVVFGVTVVLEATEDGRQVTYKIVGEDEADIKQNMI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGKE GD+++V APGGE YEIL+V ++
Sbjct: 121 SVSSPIARALIGKEEGDVVTVQAPGGETEYEILEVRYV 158
>gi|325922459|ref|ZP_08184226.1| transcription elongation factor GreA [Xanthomonas gardneri ATCC
19865]
gi|325547079|gb|EGD18166.1| transcription elongation factor GreA [Xanthomonas gardneri ATCC
19865]
Length = 154
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 118/153 (77%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+KG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L
Sbjct: 1 MTAKGAQRLREELDQLKSVKRPAVISAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ G+++ISSP
Sbjct: 61 EGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGMIAISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 121 LARALIGKLEGDSVTIDAPAGQRDYEVVSVAYL 153
>gi|269137754|ref|YP_003294454.1| transcription elongation factor [Edwardsiella tarda EIB202]
gi|267983414|gb|ACY83243.1| transcription elongation factor [Edwardsiella tarda EIB202]
gi|304557811|gb|ADM40475.1| Transcription elongation factor GreA [Edwardsiella tarda FL6-60]
Length = 158
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +K+++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGAEKLREELDFLKGTRRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M + R+ FG+TVS+ ++ D++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMPNNGRVIFGSTVSVENLDTEDQQTYRIVGDDEADFKHNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE GD++++ PGGE YEIL+V ++
Sbjct: 121 SVNSPIARGLIGKEEGDVVTIKTPGGEVEYEILKVEYL 158
>gi|325915491|ref|ZP_08177804.1| transcription elongation factor GreA [Xanthomonas vesicatoria ATCC
35937]
gi|325538292|gb|EGD09975.1| transcription elongation factor GreA [Xanthomonas vesicatoria ATCC
35937]
Length = 154
Score = 160 bits (406), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 75/153 (49%), Positives = 118/153 (77%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+KG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L
Sbjct: 1 MTAKGAQRLREELDQLKSVKRPAVIAAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ G+++ISSP
Sbjct: 61 EGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGMIAISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 121 LARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 153
>gi|254468129|ref|ZP_05081535.1| GreA/GreB family elongation factor [beta proteobacterium KB13]
gi|207086939|gb|EDZ64222.1| GreA/GreB family elongation factor [beta proteobacterium KB13]
Length = 159
Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 115/159 (72%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +IP+T G +++++EL + ++RP II+AI+EARA GDLSENAEY++AKE Q E
Sbjct: 1 MAGQIPMTRNGVERLKEELHQLKSQDRPNIIQAIAEARAQGDLSENAEYESAKERQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+AE+E ++ ++ID S ++ D + FGAT+ L + + YQIVG+ EAD+++
Sbjct: 61 GRIAEIEAKLSNVQIIDPSVLNADGKCVFGATIELEDLDEEKSFTYQIVGEDEADIKANK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SISSP+ARALIGKE GD++ V PGG+KTYEI V +I
Sbjct: 121 ISISSPLARALIGKEDGDVVEVETPGGQKTYEITNVSYI 159
>gi|71276055|ref|ZP_00652336.1| Prokaryotic transcription elongation factor GreA [Xylella
fastidiosa Dixon]
gi|71899477|ref|ZP_00681635.1| Prokaryotic transcription elongation factor GreA [Xylella
fastidiosa Ann-1]
gi|170729661|ref|YP_001775094.1| transcription elongation factor GreA [Xylella fastidiosa M12]
gi|238687951|sp|B0U568|GREA_XYLFM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71163138|gb|EAO12859.1| Prokaryotic transcription elongation factor GreA [Xylella
fastidiosa Dixon]
gi|71730790|gb|EAO32863.1| Prokaryotic transcription elongation factor GreA [Xylella
fastidiosa Ann-1]
gi|167964454|gb|ACA11464.1| GreA/GreB family elongation factor [Xylella fastidiosa M12]
Length = 158
Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ +
Sbjct: 4 PMTLKGVRRLRDELEHLKLVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63
Query: 66 LENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ AEVID++ + +G +I FGATV+L + + ++ YQIVGD EAD++ GLV+ISS
Sbjct: 64 LEGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDEESRYQIVGDLEADIKQGLVAISS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 124 PVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157
>gi|294788006|ref|ZP_06753250.1| transcription elongation factor GreA [Simonsiella muelleri ATCC
29453]
gi|294484299|gb|EFG31982.1| transcription elongation factor GreA [Simonsiella muelleri ATCC
29453]
Length = 158
Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 80/156 (51%), Positives = 118/156 (75%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
KIP+TS+G +K++ EL+ + RP II AI+EAR++GDLSENAEY++AKE Q EGR+
Sbjct: 3 KIPLTSQGAEKLKNELQHLKSVARPEIIAAIAEARSHGDLSENAEYESAKERQGFIEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
AELE+ ++ A++I+ + + + +I FGATV++++ +S ++ YQIVGD EAD++ +S+
Sbjct: 63 AELESKLSHAQIINPAEIHAEGKIVFGATVTVMDLDSDEESTYQIVGDDEADIKLFKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSPIARA+IGKE GD+ V AP G + YEIL V +I
Sbjct: 123 SSPIARAMIGKEEGDVAEVQAPSGIREYEILSVQYI 158
>gi|241763933|ref|ZP_04761975.1| transcription elongation factor GreA [Acidovorax delafieldii 2AN]
gi|241366756|gb|EER61197.1| transcription elongation factor GreA [Acidovorax delafieldii 2AN]
Length = 158
Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + ERP +I AI+EARA GDLSENA+Y AAK+ Q EGR+
Sbjct: 4 IPITKRGAEKLKEELHRLKTVERPAVITAIAEARAQGDLSENADYDAAKDRQGFIEGRIQ 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A+VID ++ G ++ FGATV L +++SGD YQIVG+ EAD++ GL++IS
Sbjct: 64 EIEGKLSVAQVIDPGSVDGGGKVVFGATVELEDEDSGDTVTYQIVGEDEADLKHGLINIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALIGKE GD V APGG + YE++ V +
Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGVRRYEVVAVRY 157
>gi|300703811|ref|YP_003745413.1| transcription elongation factor [Ralstonia solanacearum CFBP2957]
gi|299071474|emb|CBJ42794.1| transcription elongation factor [Ralstonia solanacearum CFBP2957]
Length = 158
Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G + ++ EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+
Sbjct: 4 IPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEGRIL 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ + A+VID +++ D RI FGAT+ L + +SG YQIVGD EAD+ +G +SIS
Sbjct: 64 EIESKLAAAQVIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDTGKISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V APGGE+ YE+ V ++
Sbjct: 124 SPIARALIGKYEGDVATVVAPGGEREYEVRSVKYL 158
>gi|224823861|ref|ZP_03696970.1| transcription elongation factor GreA [Lutiella nitroferrum 2002]
gi|224604316|gb|EEG10490.1| transcription elongation factor GreA [Lutiella nitroferrum 2002]
Length = 158
Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G + +++EL+ + ERP +I+AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MNKVPLTLRGAELLKEELQRLKSVERPAVIEAIAEARSHGDLSENAEYDAAKERQAFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE ++ A++I+ S + + RI FG TV L++ + D+ YQIVGD EAD++ V
Sbjct: 61 RIAELEGKLSNAQIINPSELDAEGRIVFGTTVELMDLETEDEVTYQIVGDDEADIKFAKV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGKE GD+ V APGG + YEIL V +I
Sbjct: 121 SVNSPIARALIGKEAGDVAEVMAPGGIREYEILDVKYI 158
>gi|285018124|ref|YP_003375835.1| transcription elongation factor grea (transcript cleavage factor
grea) protein [Xanthomonas albilineans GPE PC73]
gi|283473342|emb|CBA15847.1| probable transcription elongation factor grea (transcript cleavage
factor grea) protein [Xanthomonas albilineans]
Length = 158
Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q EGR+
Sbjct: 2 RAPITLQGAQRLREELDHLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQGFIEGRI 61
Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+LE+ ++ AEVIDIS ++ G ++ FGATV+L + + ++K YQ+VGD EAD++ GL++I
Sbjct: 62 KQLESELSHAEVIDISKLAVGSKVVFGATVTLADVETDEEKRYQLVGDLEADIKLGLIAI 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSP+ARALIGK GD + ++AP G + YEI+ V ++
Sbjct: 122 SSPLARALIGKMEGDSVGIDAPAGHREYEIVSVQYL 157
>gi|253826205|gb|ACT36389.1| transcriptional elogation factor GreA [uncultured bacterium L11E10]
Length = 158
Score = 160 bits (404), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G ++++EL + + +RP +I AI+EARA+GDL ENAEY AA+E Q EGR+
Sbjct: 2 RAPITKQGAQRLREELDYLKSVKRPEVIAAIAEARAHGDLKENAEYHAAREQQGFIEGRI 61
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+LE ++ AEVID++ + +G R+ FGATV L ++ ++K YQIVGD EAD++ L++I
Sbjct: 62 NQLEAELSTAEVIDVAVLDAGSRVVFGATVILAHVDTDEQKTYQIVGDLEADIKQSLIAI 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SSPIARALIGK GD + + AP GE YEI+ V +
Sbjct: 122 SSPIARALIGKNEGDSVVIQAPAGEHEYEIISVSY 156
>gi|251792645|ref|YP_003007371.1| transcription elongation factor GreA [Aggregatibacter aphrophilus
NJ8700]
gi|247534038|gb|ACS97284.1| transcription elongation factor GreA [Aggregatibacter aphrophilus
NJ8700]
Length = 158
Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G + +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAELLRKELEYLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + ++ID++ + + ++ FGATV+LV N+ D+ Y+IVGD EAD+++GL+S+
Sbjct: 63 QEIEGKLANCQIIDVTKIPNNGKVIFGATVTLVNTNTNDEVTYRIVGDDEADIKNGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE D++++ PGG +EI++V ++
Sbjct: 123 NSPIARGLIGKEQDDVVNITTPGGVVEFEIIEVEYV 158
>gi|253999583|ref|YP_003051646.1| transcription elongation factor GreA [Methylovorus sp. SIP3-4]
gi|313201618|ref|YP_004040276.1| transcription elongation factor grea [Methylovorus sp. MP688]
gi|253986262|gb|ACT51119.1| transcription elongation factor GreA [Methylovorus sp. SIP3-4]
gi|312440934|gb|ADQ85040.1| transcription elongation factor GreA [Methylovorus sp. MP688]
Length = 158
Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T G + ++QEL+ + +RP +I+AI+EARA GDLSENAEY AAKE Q+ EG
Sbjct: 1 MNQIPITVNGAELLKQELQRLRSVDRPNVIQAIAEARAQGDLSENAEYDAAKERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E ++ A VID T++ + R FGATV + + ++GD YQIVGD EAD++ G +
Sbjct: 61 RIAEIEAKLSNAMVIDPKTLNAEGRCVFGATVEVEDLDNGDVSTYQIVGDDEADIKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SPIAR LIGK GD+ V APGG ++YE+L V +I
Sbjct: 121 SIGSPIARGLIGKTAGDVAEVMAPGGLRSYEVLDVQYI 158
>gi|53803860|ref|YP_114288.1| transcription elongation factor GreA [Methylococcus capsulatus str.
Bath]
gi|81681779|sp|Q607B0|GREA_METCA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|53757621|gb|AAU91912.1| transcription elongation factor GreA [Methylococcus capsulatus str.
Bath]
Length = 158
Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T++G +K+++EL + RPR+I+AI+EARA+GDL ENAEYQAA+E Q EG
Sbjct: 1 MNKTPMTTRGAEKLREELNHLKTVARPRVIEAIAEARAHGDLKENAEYQAAREQQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A++ID++ ++ G ++ FGAT + + SG+ YQIVG+ EA+++ G +
Sbjct: 61 RIKEIEAKLANAQIIDVTRLNPGGKVVFGATAEIEDLASGEVVTYQIVGEDEAEIKEGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGK+ GD+ +V APGG + YEI+ V ++
Sbjct: 121 SVTSPIARALIGKQEGDVATVQAPGGTREYEIVSVRYV 158
>gi|260913960|ref|ZP_05920434.1| transcription elongation factor GreA [Pasteurella dagmatis ATCC
43325]
gi|260632047|gb|EEX50224.1| transcription elongation factor GreA [Pasteurella dagmatis ATCC
43325]
Length = 158
Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 117/156 (75%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G ++++QEL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAEQLRQELDFLKNTRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ +VID++ M + ++ FGATV L+ ++ D+ +YQIVGD EA+++ GL+S+
Sbjct: 63 QEIEGKLSNCQVIDVTKMPNNGKVIFGATVVLLNVDTDDEVSYQIVGDDEANIKDGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D++++ PGG+ +EI++V ++
Sbjct: 123 NSPIARGLIGKEVDDVVAIQTPGGKVEFEIIEVNYV 158
>gi|17546241|ref|NP_519643.1| transcription elongation factor GreA [Ralstonia solanacearum
GMI1000]
gi|25452993|sp|Q8XZ82|GREA_RALSO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|17428538|emb|CAD15224.1| probable transcription elongation factor grea (transcript cleavage
factorgrea) protein [Ralstonia solanacearum GMI1000]
gi|299066489|emb|CBJ37679.1| transcription elongation factor [Ralstonia solanacearum CMR15]
Length = 158
Score = 160 bits (404), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G + ++ EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+
Sbjct: 4 IPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEGRIL 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ + A+VID + + D RI FGAT+ L + +SG YQIVGD EAD+ SG +SIS
Sbjct: 64 EIESKLAAAQVIDPAGLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDSGKISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V APGGE+ YE+ V ++
Sbjct: 124 SPIARALIGKYEGDVATVVAPGGEREYEVRAVKYL 158
>gi|22124593|ref|NP_668016.1| transcription elongation factor GreA [Yersinia pestis KIM 10]
gi|45440432|ref|NP_991971.1| transcription elongation factor GreA [Yersinia pestis biovar
Microtus str. 91001]
gi|51594823|ref|YP_069014.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
IP 32953]
gi|108806053|ref|YP_649969.1| transcription elongation factor GreA [Yersinia pestis Antiqua]
gi|108813409|ref|YP_649176.1| transcription elongation factor GreA [Yersinia pestis Nepal516]
gi|145600801|ref|YP_001164877.1| transcription elongation factor GreA [Yersinia pestis Pestoides F]
gi|153947048|ref|YP_001402559.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
IP 31758]
gi|153997282|ref|ZP_02022382.1| transcription elongation factor [Yersinia pestis CA88-4125]
gi|162421747|ref|YP_001608277.1| transcription elongation factor GreA [Yersinia pestis Angola]
gi|165928150|ref|ZP_02223982.1| transcription elongation factor GreA [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937569|ref|ZP_02226132.1| transcription elongation factor GreA [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011327|ref|ZP_02232225.1| transcription elongation factor GreA [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214002|ref|ZP_02240037.1| transcription elongation factor GreA [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401279|ref|ZP_02306779.1| transcription elongation factor GreA [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167420462|ref|ZP_02312215.1| transcription elongation factor GreA [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423351|ref|ZP_02315104.1| transcription elongation factor GreA [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167470193|ref|ZP_02334897.1| transcription elongation factor GreA [Yersinia pestis FV-1]
gi|170025954|ref|YP_001722459.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
YPIII]
gi|186893832|ref|YP_001870944.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
PB1/+]
gi|218930519|ref|YP_002348394.1| transcription elongation factor GreA [Yersinia pestis CO92]
gi|229839158|ref|ZP_04459317.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229896647|ref|ZP_04511814.1| transcription elongation factor [Yersinia pestis Pestoides A]
gi|229899722|ref|ZP_04514863.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. India 195]
gi|229903884|ref|ZP_04518997.1| transcription elongation factor [Yersinia pestis Nepal516]
gi|270489127|ref|ZP_06206201.1| transcription elongation factor GreA [Yersinia pestis KIM D27]
gi|25452996|sp|Q8ZBB3|GREA_YERPE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238687311|sp|A9R594|GREA_YERPG RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|21957396|gb|AAM84267.1|AE013670_4 transcription elongation factor [Yersinia pestis KIM 10]
gi|45435289|gb|AAS60848.1| transcription elongation factor [Yersinia pestis biovar Microtus
str. 91001]
gi|51588105|emb|CAH19711.1| transcription elongation factor [Yersinia pseudotuberculosis IP
32953]
gi|108777057|gb|ABG19576.1| transcription elongation factor GreA [Yersinia pestis Nepal516]
gi|108777966|gb|ABG12024.1| transcription elongation factor GreA [Yersinia pestis Antiqua]
gi|115349130|emb|CAL22093.1| transcription elongation factor [Yersinia pestis CO92]
gi|145212497|gb|ABP41904.1| transcription elongation factor GreA [Yersinia pestis Pestoides F]
gi|149288919|gb|EDM38999.1| transcription elongation factor [Yersinia pestis CA88-4125]
gi|152958543|gb|ABS46004.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
IP 31758]
gi|162354562|gb|ABX88510.1| transcription elongation factor GreA [Yersinia pestis Angola]
gi|165914674|gb|EDR33288.1| transcription elongation factor GreA [Yersinia pestis biovar
Orientalis str. IP275]
gi|165919837|gb|EDR37138.1| transcription elongation factor GreA [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989711|gb|EDR42012.1| transcription elongation factor GreA [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204797|gb|EDR49277.1| transcription elongation factor GreA [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961268|gb|EDR57289.1| transcription elongation factor GreA [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049304|gb|EDR60712.1| transcription elongation factor GreA [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057521|gb|EDR67267.1| transcription elongation factor GreA [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752488|gb|ACA70006.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
YPIII]
gi|186696858|gb|ACC87487.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
PB1/+]
gi|229679654|gb|EEO75757.1| transcription elongation factor [Yersinia pestis Nepal516]
gi|229687214|gb|EEO79289.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695524|gb|EEO85571.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229700425|gb|EEO88457.1| transcription elongation factor [Yersinia pestis Pestoides A]
gi|262363429|gb|ACY60150.1| transcription elongation factor GreA [Yersinia pestis D106004]
gi|262367196|gb|ACY63753.1| transcription elongation factor GreA [Yersinia pestis D182038]
gi|270337631|gb|EFA48408.1| transcription elongation factor GreA [Yersinia pestis KIM D27]
gi|320013709|gb|ADV97280.1| transcription elongation factor [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 158
Score = 159 bits (403), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G DK+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VIDI+ M + R+ FGATV ++ N+ +++NY+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNLNTEEEQNYRIVGDDEADFKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D++ ++ PGGE YEIL V ++
Sbjct: 123 NSPIARGLIGKEVDDVVVIHTPGGEVEYEILSVEYV 158
>gi|15837710|ref|NP_298398.1| transcription elongation factor GreA [Xylella fastidiosa 9a5c]
gi|11279753|pir||D82723 transcription elongation factor XF1108 [imported] - Xylella
fastidiosa (strain 9a5c)
gi|9106063|gb|AAF83918.1|AE003946_9 transcriptional elongation factor [Xylella fastidiosa 9a5c]
Length = 154
Score = 159 bits (403), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 79/153 (51%), Positives = 113/153 (73%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L
Sbjct: 1 MTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ AEVID++ + +G +I FGATV+LV+ + ++ YQIVGD EAD++ GLV+ISSP
Sbjct: 61 EGELSHAEVIDVAKLNAGTKIVFGATVTLVDLETDEESRYQIVGDLEADIKQGLVAISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 121 VARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 153
>gi|197287221|ref|YP_002153093.1| transcription elongation factor [Proteus mirabilis HI4320]
gi|227357084|ref|ZP_03841454.1| transcription elongation factor [Proteus mirabilis ATCC 29906]
gi|194684708|emb|CAR46682.1| transcription elongation factor [Proteus mirabilis HI4320]
gi|227162776|gb|EEI47739.1| transcription elongation factor [Proteus mirabilis ATCC 29906]
Length = 158
Score = 159 bits (403), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T G +K+++EL + + RP I AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTVLGAEKLREELEYLKSVRRPEITAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M+ + RI FGATV+L+ ++ +++ Y+IVGD EA+++ L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMTNNGRIIFGATVTLLNVDTEEEQKYRIVGDDEANIKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKEL D++ +N PGG+ YE+L V +I
Sbjct: 121 SVNSPIARGLIGKELDDVVVINTPGGQVEYEVLNVEYI 158
>gi|113868419|ref|YP_726908.1| transcription elongation factor GreA [Ralstonia eutropha H16]
gi|113527195|emb|CAJ93540.1| transcription elongation factor GreA [Ralstonia eutropha H16]
Length = 158
Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G + +++EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EGR+
Sbjct: 4 IPITKRGAELLKEELQRLKAVERPAVINAISEARAQGDLSENAEYDAAKEKQAFIEGRIL 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A++ID + + D RI FGATV L + SG +YQIVGD EAD+ G +S+S
Sbjct: 64 EVEAKLSAAQIIDPTQLDTDGRIVFGATVDLEDLESGSPVSYQIVGDDEADIDVGKISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V APGGE+ YE++ V +I
Sbjct: 124 SPIARALIGKFEGDVATVLAPGGEREYEVITVRYI 158
>gi|330816264|ref|YP_004359969.1| Transcription elongation factor GreA [Burkholderia gladioli BSR3]
gi|327368657|gb|AEA60013.1| Transcription elongation factor GreA [Burkholderia gladioli BSR3]
Length = 158
Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 111/155 (71%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTKRGAEQLRSELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ ++ A+VID S + + R+ FGATV L + S YQIVGD EAD+ GL+S+S
Sbjct: 64 EIESKLSAAQVIDPSVIDAEGRVVFGATVELEDLGSSATVKYQIVGDDEADIDHGLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V AP G + YEI+ V ++
Sbjct: 124 SPIARALIGKSEGDVAAVQAPSGVREYEIISVSYV 158
>gi|114763611|ref|ZP_01443016.1| transcription elongation factor GreA [Pelagibaca bermudensis
HTCC2601]
gi|114543891|gb|EAU46903.1| transcription elongation factor GreA [Roseovarius sp. HTCC2601]
Length = 156
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KI +T GF ++ EL+ + +ERP +I+AI+EAR GDL ENAEY +A+E Q EG
Sbjct: 1 MEKILITRAGFTALETELKTLKSKERPAVIQAIAEARELGDLKENAEYHSAREKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E +++ AEVID + +SG + FGATV +V++++ ++K +QIVG+ EA++ GL++
Sbjct: 61 RIKEIEAVMSLAEVIDPTKLSG-AVKFGATVKVVDEDTDEEKTWQIVGEHEANIDKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
I SPIARALIGKE GD + V PGGEK+YEIL +
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGEKSYEILSI 153
>gi|190574174|ref|YP_001972019.1| transcription elongation factor GreA [Stenotrophomonas maltophilia
K279a]
gi|190012096|emb|CAQ45718.1| putative transcription elongation factor [Stenotrophomonas
maltophilia K279a]
Length = 158
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T KG K++ EL + +RP++I AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 2 RAPITMKGAQKLRDELDHLKSVKRPKVIAAIAEAREHGDLKENAEYHAAREEQGFIEGRI 61
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+LE ++ AE+ID+S + +G ++ FGA+V+L + + ++K YQIVGD EAD++ GL++I
Sbjct: 62 KQLEGELSHAEIIDVSKLNAGSKVVFGASVTLADVETDEEKKYQIVGDLEADIKQGLIAI 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSP+ARA+IGK GD I ++AP G++ YEI+ V ++
Sbjct: 122 SSPVARAMIGKLEGDSIVIDAPAGQREYEIVSVSYV 157
>gi|291613526|ref|YP_003523683.1| transcription elongation factor GreA [Sideroxydans lithotrophicus
ES-1]
gi|291583638|gb|ADE11296.1| transcription elongation factor GreA [Sideroxydans lithotrophicus
ES-1]
Length = 158
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/156 (54%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T G + ++QEL + +RP +I AISEARA GDLSENAEY+AAKE Q+ EGR+
Sbjct: 3 KVPLTVNGAELLRQELHRLKTVDRPSVINAISEARAQGDLSENAEYEAAKERQSFIEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
ELE + A+VID T++ D R FG+TV + + N+GD YQIVGD EAD++ +SI
Sbjct: 63 VELEFKLGSAQVIDPKTVNADGRCVFGSTVVIEDTNNGDVVTYQIVGDDEADIKQRKISI 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSPIARALIGK GDI V APGG + YE++ V +I
Sbjct: 123 SSPIARALIGKVSGDIAEVQAPGGIREYEVVDVQYI 158
>gi|187929112|ref|YP_001899599.1| transcription elongation factor GreA [Ralstonia pickettii 12J]
gi|187726002|gb|ACD27167.1| transcription elongation factor GreA [Ralstonia pickettii 12J]
Length = 158
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 115/155 (74%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G + ++ EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+
Sbjct: 4 IPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEGRIQ 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E+ ++ A++ID +++ + R+ FGAT+ L + +SG YQIVGD EAD++ G +SIS
Sbjct: 64 EIESKLSAAQIIDPASLDAEGRVVFGATIDLEDLDSGKPVTYQIVGDDEADIEIGKISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+ +V APGGE+ YE+L V ++
Sbjct: 124 SPIARALIGKLEGDVATVVAPGGEREYEVLAVKYL 158
>gi|254465444|ref|ZP_05078855.1| transcription elongation factor GreA [Rhodobacterales bacterium
Y4I]
gi|206686352|gb|EDZ46834.1| transcription elongation factor GreA [Rhodobacterales bacterium
Y4I]
Length = 156
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 121/156 (77%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MEKIPMTPAGHAALESELKTLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ A+VI+ + ++G I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGILSLADVINPAKLNG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGK+ GD + V PGGE++YEIL++++
Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGERSYEILKIVY 155
>gi|332974639|gb|EGK11556.1| transcription elongation factor GreA [Kingella kingae ATCC 23330]
Length = 186
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 81/159 (50%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ KIP+T G ++++ EL+ + RP +I AI+EAR++GDLSENAEY+AAK+ Q E
Sbjct: 28 IMKKIPLTVHGAERLKAELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKDRQGFIE 87
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+AELEN ++ A++ID + D +I FGATV+L++ +S ++ YQIVGD EAD++
Sbjct: 88 GRIAELENKLSHAQIIDPKEIHADGKIVFGATVNLMDLDSDEESCYQIVGDDEADIKLFK 147
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIARALIGKE GD+ V AP G + YEIL V +I
Sbjct: 148 ISVNSPIARALIGKEEGDVAEVQAPSGIREYEILTVQYI 186
>gi|294085795|ref|YP_003552555.1| transcription elongation factor [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665370|gb|ADE40471.1| Transcription elongation factor [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 167
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 111/155 (71%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+++KIP T++G + I++EL + ER +I AI+ AR +GDLSENAEY AA+E Q+ E
Sbjct: 5 LMEKIPFTAQGLEAIKEELAHLKGTERQAVINAIAVAREHGDLSENAEYHAARERQSFIE 64
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE + +R+EVID S ++GD++ FG +V + ++ + ++ + IVG EAD+ GLV
Sbjct: 65 GRISELEAVTSRSEVIDASQLTGDKVTFGTSVGVADEETDEESIFHIVGPYEADISKGLV 124
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SSPIAR LIGK +GD + PGG K+YEI+ +
Sbjct: 125 STSSPIARGLIGKGIGDSAEIQTPGGTKSYEIISI 159
>gi|16273242|ref|NP_439483.1| transcription elongation factor GreA [Haemophilus influenzae Rd
KW20]
gi|260581322|ref|ZP_05849138.1| transcription elongation factor GreB [Haemophilus influenzae RdAW]
gi|1170015|sp|P43881|GREA_HAEIN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|1574790|gb|AAC22976.1| transcription elongation factor (greA) [Haemophilus influenzae Rd
KW20]
gi|260091989|gb|EEW75936.1| transcription elongation factor GreB [Haemophilus influenzae RdAW]
Length = 158
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + A++ID+S M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+S+
Sbjct: 63 QEIEGKLGNAQIIDVSKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158
>gi|121604678|ref|YP_982007.1| transcription elongation factor GreA [Polaromonas naphthalenivorans
CJ2]
gi|229485903|sp|A1VN58|GREA_POLNA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|120593647|gb|ABM37086.1| transcription elongation factor GreA [Polaromonas naphthalenivorans
CJ2]
Length = 158
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+P+T +G +K++ EL + +RP +I AISEARA GDLSENAEY+ AK+ Q EGR+
Sbjct: 4 LPITKRGAEKLKAELHNLKTVQRPWVINAISEARAQGDLSENAEYEVAKDRQGFIEGRIQ 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A+VID +T +G R+ FG+TV L ++ +GD YQIVG+ EAD++ GLV+I
Sbjct: 64 EIEGKLSAAQVIDPTTFETGTRVVFGSTVKLEDEATGDSVTYQIVGEDEADIKLGLVNIG 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK+ GD V APGG + YEI+ VL+I
Sbjct: 124 SPIARALIGKDEGDSAEVQAPGGIRRYEIVTVLYI 158
>gi|260431555|ref|ZP_05785526.1| transcription elongation factor GreA [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415383|gb|EEX08642.1| transcription elongation factor GreA [Silicibacter lacuscaerulensis
ITI-1157]
Length = 156
Score = 159 bits (402), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GF ++ EL+ + ERP II+AI+ AR GDL ENAEY +A+E Q EG
Sbjct: 1 MEKIPMTPAGFAALEAELKQLKSVERPAIIEAIASARELGDLKENAEYHSAREKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +++ AEVID + +SG I FGA V+LV++++ ++K +QIVG+ EA+++ GL++
Sbjct: 61 RIKELEGVLSLAEVIDPTKLSG-AIKFGAKVTLVDEDTDEEKTWQIVGEHEANIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGKE GD + V PGG ++YE+L + +
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGVRSYEVLSIHY 155
>gi|261856155|ref|YP_003263438.1| transcription elongation factor GreA [Halothiobacillus neapolitanus
c2]
gi|261836624|gb|ACX96391.1| transcription elongation factor GreA [Halothiobacillus neapolitanus
c2]
Length = 158
Score = 159 bits (401), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T+ G K++ EL+ + ERPRII+AI+EAR GDL ENAEY AA+E Q EGR+ E
Sbjct: 4 PMTAAGAAKLEAELKQLRGVERPRIIQAIAEARDLGDLKENAEYHAAREEQGFVEGRIKE 63
Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E ++ A +ID+S + D++ FGATV +++ +S ++ Y+IVGD EAD++S ++S+ S
Sbjct: 64 IEAKLSHANIIDVSRLPPSDKVIFGATVRVLDVDSDEEITYKIVGDDEADIKSNMISVHS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
PIARAL+GK LGD ++V+APGG++ +EI +V +I
Sbjct: 124 PIARALVGKSLGDEVTVDAPGGKRVFEITEVQYI 157
>gi|146328850|ref|YP_001210068.1| transcription elongation factor GreA [Dichelobacter nodosus
VCS1703A]
gi|146232320|gb|ABQ13298.1| transcription elongation factor GreA [Dichelobacter nodosus
VCS1703A]
Length = 160
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/159 (49%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KIP+T G + +Q EL + ++RP +I+AI+EAR +GDL ENAEY AA+E Q E
Sbjct: 1 MNQKIPMTKAGAEALQAELEKLKSKDRPAVIQAIAEAREHGDLKENAEYHAAREQQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E ++ +ID++ + D R+ FG T+ L + NSG+ Y+IVG+ EAD++ G+
Sbjct: 61 GRIQEIEFKLSNVNIIDVTRLPQDGRVVFGTTIELEDANSGEIMKYKIVGEDEADIKKGM 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S SSPIARAL GKE GDI+ VN PGG+K+ EI+ V +I
Sbjct: 121 ISNSSPIARALFGKEEGDIVDVNVPGGQKSLEIIAVHYI 159
>gi|332283361|ref|YP_004415272.1| hypothetical protein PT7_0108 [Pusillimonas sp. T7-7]
gi|330427314|gb|AEC18648.1| hypothetical protein PT7_0108 [Pusillimonas sp. T7-7]
Length = 158
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T++G +++Q EL + ERP +I AI+EARA GDLSENAEY AA+E Q EGR+
Sbjct: 4 IPLTARGAERLQAELHRLKTIERPEVINAIAEARAQGDLSENAEYDAARERQAFVEGRIQ 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE ++ A++ID ST+ + + FGATV + + SG++ YQIVGD EAD++S L+S+S
Sbjct: 64 ELEGTLSNAQIIDPSTLDVEGKAVFGATVEIEDLESGERVKYQIVGDVEADIRSNLISVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARALIG+ GD++ V AP G + YE+L V ++
Sbjct: 124 SPVARALIGRGQGDVVEVKAPAGIREYEVLNVSYL 158
>gi|134094396|ref|YP_001099471.1| putative transcription elongation factor and transcript cleavage
[Herminiimonas arsenicoxydans]
gi|133738299|emb|CAL61344.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Herminiimonas arsenicoxydans]
Length = 157
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G + +++EL + +ERP +I AI+EARA GDLSENA+Y AAKE Q+ EGR+A+
Sbjct: 4 PITPHGANLMKEELHRLKTKERPWVINAIAEARAQGDLSENADYDAAKEKQSFIEGRIAD 63
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE + +++ID +T+ D RI F ATV L + +SGDK YQIVG EAD++ VSI+S
Sbjct: 64 LEGKLGTSQIIDPTTLEADGRIVFAATVDLEDLDSGDKVTYQIVGIDEADLKEKKVSITS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
PIARA+IGK +GD+++V AP G + YE+LQV +I
Sbjct: 124 PIARAMIGKSVGDVVAVEAPAGIREYEVLQVRYI 157
>gi|332530815|ref|ZP_08406741.1| transcription elongation factor GreA [Hylemonella gracilis ATCC
19624]
gi|332039727|gb|EGI76127.1| transcription elongation factor GreA [Hylemonella gracilis ATCC
19624]
Length = 158
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 112/154 (72%), Gaps = 1/154 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K++ EL + +RP +I AI+EARA GDLSENAEY AAK+ Q EGR+
Sbjct: 4 IPITLRGAEKLKTELHRLKTVDRPAVINAIAEARAQGDLSENAEYDAAKDRQGFIEGRIQ 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A+VID + + +G ++ FGATV L ++ +GD YQIVG+ EAD++ GL+++S
Sbjct: 64 EIEGKLSAAQVIDPAGLDAGGKVVFGATVELEDEATGDSVTYQIVGEDEADLKQGLINVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALIGKE GD V APGG K YEI+ V +
Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGVKRYEIVAVSY 157
>gi|82701614|ref|YP_411180.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC
25196]
gi|82409679|gb|ABB73788.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC
25196]
Length = 158
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 109/155 (70%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T G K++ EL + +RP +I AI+EAR++GDLSENAEY+AAKE Q EGR+A
Sbjct: 4 IPLTVTGAGKLRAELHEMKTVQRPAVIAAIAEARSHGDLSENAEYEAAKERQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE+ ++ A++ID +T+ D FGAT+ L + S YQIVGD EAD++ G +SIS
Sbjct: 64 ELESKLSNAQIIDPATLDADGACVFGATIDLEDVESATTVTYQIVGDDEADIKEGKISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPI+RALIGK GD+ V APGG + YEIL V +I
Sbjct: 124 SPISRALIGKYPGDVAEVMAPGGVREYEILDVRYI 158
>gi|242240758|ref|YP_002988939.1| transcription elongation factor GreA [Dickeya dadantii Ech703]
gi|242132815|gb|ACS87117.1| transcription elongation factor GreA [Dickeya dadantii Ech703]
Length = 158
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +K++QEL + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QFPMTLRGAEKLRQELEHLKTVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VID++ MS R+ FGATV+++ +S +++ Y+IVGD EAD++ L+S+
Sbjct: 63 QEIEAKLSNAQVIDVTKMSATGRVIFGATVTVLNVDSDEEQTYRIVGDDEADIKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE D+++++ PGG YEIL+V ++
Sbjct: 123 NSPIARGLIGKETDDVVTISTPGGAVEYEILKVEYL 158
>gi|294634505|ref|ZP_06713040.1| transcription elongation factor, cleaves 3 nucleotide of paused
mRNA [Edwardsiella tarda ATCC 23685]
gi|291092019|gb|EFE24580.1| transcription elongation factor, cleaves 3 nucleotide of paused
mRNA [Edwardsiella tarda ATCC 23685]
Length = 198
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +K+++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 41 MNQIPMTLRGAEKLREELDFLKGTRRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 100
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M + R+ FGATVS+ ++ D++ Y+IVGD EAD + L+
Sbjct: 101 RIQEIEAKLSNAQVIDVTKMPNNGRVIFGATVSVENVDTEDQQTYRIVGDDEADFKHNLI 160
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE G+++++ PGGE YEIL+V ++
Sbjct: 161 SVNSPIARGLIGKEEGEVVTIKTPGGEVEYEILKVEYL 198
>gi|68250001|ref|YP_249113.1| transcription elongation factor GreA [Haemophilus influenzae
86-028NP]
gi|145629417|ref|ZP_01785215.1| transcription elongation factor GreA [Haemophilus influenzae
22.1-21]
gi|145630776|ref|ZP_01786554.1| transcription elongation factor GreA [Haemophilus influenzae R3021]
gi|145634950|ref|ZP_01790657.1| transcription elongation factor GreA [Haemophilus influenzae
PittAA]
gi|145636182|ref|ZP_01791852.1| transcription elongation factor GreA [Haemophilus influenzae
PittHH]
gi|145638911|ref|ZP_01794519.1| transcription elongation factor GreA [Haemophilus influenzae
PittII]
gi|148826011|ref|YP_001290764.1| transcription elongation factor GreA [Haemophilus influenzae
PittEE]
gi|148826969|ref|YP_001291722.1| transcription elongation factor GreA [Haemophilus influenzae
PittGG]
gi|229847491|ref|ZP_04467588.1| transcription elongation factor GreA [Haemophilus influenzae
7P49H1]
gi|260582445|ref|ZP_05850236.1| transcription elongation factor GreB [Haemophilus influenzae NT127]
gi|319776271|ref|YP_004138759.1| transcription elongation factor [Haemophilus influenzae F3047]
gi|68058200|gb|AAX88453.1| transcription elongation factor GreA [Haemophilus influenzae
86-028NP]
gi|144978260|gb|EDJ88024.1| transcription elongation factor GreA [Haemophilus influenzae
22.1-21]
gi|144983658|gb|EDJ91118.1| transcription elongation factor GreA [Haemophilus influenzae R3021]
gi|145267816|gb|EDK07813.1| transcription elongation factor GreA [Haemophilus influenzae
PittAA]
gi|145270704|gb|EDK10637.1| transcription elongation factor GreA [Haemophilus influenzae
PittHH]
gi|145271883|gb|EDK11792.1| transcription elongation factor GreA [Haemophilus influenzae
PittII]
gi|148716171|gb|ABQ98381.1| transcription elongation factor GreA [Haemophilus influenzae
PittEE]
gi|148718211|gb|ABQ99338.1| transcription elongation factor GreA [Haemophilus influenzae
PittGG]
gi|229809632|gb|EEP45359.1| transcription elongation factor GreA [Haemophilus influenzae
7P49H1]
gi|260094425|gb|EEW78322.1| transcription elongation factor GreB [Haemophilus influenzae NT127]
gi|309750885|gb|ADO80869.1| Transcription elongation factor GreA [Haemophilus influenzae R2866]
gi|309973148|gb|ADO96349.1| Transcription elongation factor GreA [Haemophilus influenzae R2846]
gi|317450862|emb|CBY87086.1| transcription elongation factor [Haemophilus influenzae F3047]
Length = 158
Score = 158 bits (400), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+S+
Sbjct: 63 QEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158
>gi|171463553|ref|YP_001797666.1| transcription elongation factor GreA [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171193091|gb|ACB44052.1| transcription elongation factor GreA [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 158
Score = 158 bits (399), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 109/155 (70%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G + +++EL + ERP +I AISEARA GDLSENAEY AAKE Q EGR+
Sbjct: 4 IPITKRGAELLKEELHRLKHVERPAVINAISEARAQGDLSENAEYDAAKEKQGFIEGRIQ 63
Query: 65 ELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE ++ A++ID +++ R+ FGATV L + G + YQIVGD EAD+ S +SIS
Sbjct: 64 ELEGKLSAAQIIDPASLDITGRVVFGATVDLKDLEDGTRLTYQIVGDDEADIASNKISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALI KE GD+++V APGG + EIL V ++
Sbjct: 124 SPIARALISKEEGDVVAVQAPGGNREVEILAVRYV 158
>gi|217970148|ref|YP_002355382.1| transcription elongation factor GreA [Thauera sp. MZ1T]
gi|217507475|gb|ACK54486.1| transcription elongation factor GreA [Thauera sp. MZ1T]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T G +K++ EL + ERP +I AI+EAR++GDLSENAEY+AAK+ Q EG
Sbjct: 1 MNKTPLTVAGAEKLRTELHRLKTVERPNVIAAIAEARSHGDLSENAEYEAAKDRQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ + A++ID + + D R FGATV L + SG YQIVGD EAD++ +
Sbjct: 61 RIMEVESKLANAQIIDPTLLDADGRCVFGATVELEDLESGQVVTYQIVGDDEADIKDNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GDI V APGG + YEIL V ++
Sbjct: 121 SISSPIARALIGKYAGDIAEVQAPGGVREYEILDVRYV 158
>gi|307579424|gb|ADN63393.1| transcription elongation factor GreA [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 154
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 78/153 (50%), Positives = 112/153 (73%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L
Sbjct: 1 MTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ AEVID++ + +G +I FGATV+L + + ++ YQIVGD EAD++ GLV+ISSP
Sbjct: 61 EGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDEESRYQIVGDLEADIKQGLVAISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 121 VARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 153
>gi|237748685|ref|ZP_04579165.1| transcription elongation factor protein [Oxalobacter formigenes
OXCC13]
gi|229380047|gb|EEO30138.1| transcription elongation factor protein [Oxalobacter formigenes
OXCC13]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 117/155 (75%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IPVT +G ++ EL+ + ++R +I AI+EAR++GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPVTVRGAQMLRDELQRLKTKDRYEVIAAIAEARSHGDLSENAEYDAAKERQAFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE ++ A++ID +T++ + +I F ATVS+ + +GD+ YQIVG+ EAD++ +SI+
Sbjct: 64 ELEGKLSSAQIIDPTTLNTNGKIVFAATVSVEDLETGDRVTYQIVGNDEADLKEFKISIT 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARALIG+E GD++ VNAP G + YEIL+V++I
Sbjct: 124 SPMARALIGREEGDVVEVNAPAGVREYEILEVMFI 158
>gi|95929152|ref|ZP_01311896.1| transcription elongation factor GreA [Desulfuromonas acetoxidans
DSM 684]
gi|95134650|gb|EAT16305.1| transcription elongation factor GreA [Desulfuromonas acetoxidans
DSM 684]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 116/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D +P+T + + ++Q+EL+ R + +RP++++ I+EAR++GDLSENAEY AAK+ Q E
Sbjct: 1 MSDSVPMTPECYARLQEELKNRIKVDRPKVVQDIAEARSHGDLSENAEYDAAKDRQAHIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AEL + + RAEVID +++ D+I FGATV+L + +S ++ YQIVG+ EAD++ G +
Sbjct: 61 GRIAELNDKLARAEVIDPKSINTDKIVFGATVTLFDTDSDNEVVYQIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SP+ +ALIG L D + +N P G + YE+ ++ +
Sbjct: 121 SVTSPVGKALIGHTLDDEVRINVPSGTRIYEVTEIEY 157
>gi|294670994|ref|ZP_06735850.1| hypothetical protein NEIELOOT_02701 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307481|gb|EFE48724.1| hypothetical protein NEIELOOT_02701 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
KIP+T +G + ++ EL+ + RP +I AI+EAR++GDLSENAEY+AAKE Q EGR+
Sbjct: 3 KIPLTIRGAELLKNELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKEKQGFIEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
AE+E+ ++ A +I+ + + + ++ FGAT+ L + +SGD YQIVG+ EAD+++G +S+
Sbjct: 63 AEIEHKLSHAHIINPAEIHAEGKVVFGATLMLEDLDSGDHVRYQIVGEDEADIKAGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGKE GD+ V APGG + YEI++V ++
Sbjct: 123 VSPIARALIGKEEGDVAEVQAPGGVREYEIVEVQYV 158
>gi|71082811|ref|YP_265530.1| transcription elongation factor [Candidatus Pelagibacter ubique
HTCC1062]
gi|91762766|ref|ZP_01264731.1| Transcription elongation factor [Candidatus Pelagibacter ubique
HTCC1002]
gi|123775546|sp|Q4FPG2|GREA_PELUB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71061924|gb|AAZ20927.1| Transcription elongation factor [Candidatus Pelagibacter ubique
HTCC1062]
gi|91718568|gb|EAS85218.1| Transcription elongation factor [Candidatus Pelagibacter ubique
HTCC1002]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK P+T+ G + +++EL + ++++RP+I+ AISEAR++GDL ENAEY AAKE Q+ NEG
Sbjct: 1 MDKEPITADGLESLKEELIFLKEKKRPQIVAAISEARSHGDLKENAEYHAAKEEQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+ +II RA VID++ MS D ++ FG+TV L ++G+K Y+IVG EAD+Q L+
Sbjct: 61 RITEINDIIARANVIDVTKMSNDGKVIFGSTVDLENLDTGEKITYKIVGKDEADLQKKLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPI R LIGK D++ + P G K +EI V ++
Sbjct: 121 FFQSPIGRGLIGKNKNDLVEIKTPAGVKNFEIKDVKYV 158
>gi|301170078|emb|CBW29682.1| transcription elongation factor [Haemophilus influenzae 10810]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+S+
Sbjct: 63 QEIEAKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158
>gi|194365590|ref|YP_002028200.1| transcription elongation factor GreA [Stenotrophomonas maltophilia
R551-3]
gi|194348394|gb|ACF51517.1| transcription elongation factor GreA [Stenotrophomonas maltophilia
R551-3]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T KG K++ EL + +RP++I AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 2 RAPITMKGAQKLRDELDHLKSVKRPKVIAAIAEAREHGDLKENAEYHAAREEQGFIEGRI 61
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+LE ++ AE+ID+S + +G ++ FGA+V+L + + +++ YQIVGD EAD++ GL++I
Sbjct: 62 KQLEGELSHAEIIDVSKLNAGSKVVFGASVTLADVETDEERKYQIVGDLEADIKQGLIAI 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSP+ARA+IGK GD I ++AP G++ YEI+ V ++
Sbjct: 122 SSPVARAMIGKLEGDSIVIDAPAGQREYEIVSVSYL 157
>gi|56478163|ref|YP_159752.1| transcription elongation factor [Aromatoleum aromaticum EbN1]
gi|56314206|emb|CAI08851.1| transcription elongation factor [Aromatoleum aromaticum EbN1]
Length = 184
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 82/156 (52%), Positives = 108/156 (69%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T G +K++ EL + ERP +I AI+EAR++GDLSENAEY AAKE Q EGR+
Sbjct: 29 KTPLTVAGAEKLRNELHRLKTVERPSVIAAIAEARSHGDLSENAEYDAAKERQGFVEGRI 88
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E I+ A++ID + D R FGATV L + ++G YQIVGD EAD++ +SI
Sbjct: 89 KEIEGKISSAQIIDPKLLDADGRCVFGATVELEDMDTGQTVMYQIVGDDEADLKENKISI 148
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSPIARALIGK GDI V+APGG + YEI+ V ++
Sbjct: 149 SSPIARALIGKFAGDIAEVHAPGGVREYEIIDVRYV 184
>gi|121608129|ref|YP_995936.1| transcription elongation factor GreA [Verminephrobacter eiseniae
EF01-2]
gi|189042254|sp|A1WH11|GREA_VEREI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|121552769|gb|ABM56918.1| transcription elongation factor GreA [Verminephrobacter eiseniae
EF01-2]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/154 (52%), Positives = 110/154 (71%), Gaps = 1/154 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K++QEL + ERP +I AI+EARA GDLSENA+Y AAK+ Q EGR+
Sbjct: 4 IPITKRGAEKLKQELHHLKTVERPSVITAIAEARAQGDLSENADYDAAKDRQGFVEGRIQ 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A+VID + G ++ FGATV L ++ SGD YQIVG+ EAD++ GL++IS
Sbjct: 64 EIEGKLSVAQVIDPGEVDGGGKVVFGATVQLEDEESGDTVTYQIVGEDEADLKQGLINIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALIGKE GD V AP G + YE++ V +
Sbjct: 124 SPIARALIGKEEGDTAEVQAPSGIRRYEVVAVSY 157
>gi|91788539|ref|YP_549491.1| GreA/GreB family elongation factor [Polaromonas sp. JS666]
gi|91697764|gb|ABE44593.1| GreA/GreB family elongation factor [Polaromonas sp. JS666]
Length = 158
Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+P+T +G +K++ EL + +RP +I +ISEARA GDLSENAEY AAK+ Q EGR+
Sbjct: 4 LPITKRGAEKLKAELHQLKTVDRPWVINSISEARAQGDLSENAEYDAAKDRQGFIEGRIQ 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A++ID S + +G R+ FG+T+ L ++ SGD YQIVG+ EAD++ G V+I
Sbjct: 64 EIEGKLSAAQIIDPSELDAGGRVVFGSTIELQDEESGDTVTYQIVGEDEADIKHGRVNIG 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK+ GD V APGG K YEI+ V++I
Sbjct: 124 SPIARALIGKDEGDTAEVQAPGGVKRYEIVAVMYI 158
>gi|117619726|ref|YP_857805.1| transcription elongation factor GreA [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561133|gb|ABK38081.1| transcription elongation factor GreA [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 158
Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 119/158 (75%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ P+T +G +K+++EL + + E RP+II+AI++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNHTPMTVRGAEKLREELEYLKTELRPQIIEAIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A+VIDI+ M+ + R+ FGATV+L++ + ++ Y+IVGD EAD++ ++
Sbjct: 61 RIQEIESKLSNAQVIDITKMTNNGRVIFGATVTLLKSETEEEVVYRIVGDDEADIKQNMI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGKE+ D+ V P G+ YEIL+V ++
Sbjct: 121 SVNSPIARALIGKEVDDVAIVKTPAGDVEYEILEVAYL 158
>gi|325267980|ref|ZP_08134627.1| transcription elongation factor GreA [Kingella denitrificans ATCC
33394]
gi|324980521|gb|EGC16186.1| transcription elongation factor GreA [Kingella denitrificans ATCC
33394]
Length = 158
Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/156 (51%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
KIP+T G ++++ EL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EGR+
Sbjct: 3 KIPLTVNGAEQLKAELQKLKSVARPAIIEAIAEARSHGDLSENAEYEAAKEKQGFIEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
AELEN + A++I+ + + +I FGATV L++ ++ +K YQIVGD EAD++ +S+
Sbjct: 63 AELENKLAHAQIINPKEIHAEGKIVFGATVQLLDLDTDEKAQYQIVGDDEADIKLFKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIARALIGKE GDI V AP G + YEIL+V +
Sbjct: 123 NSPIARALIGKEEGDIAEVQAPSGLREYEILKVAYF 158
>gi|319778418|ref|YP_004129331.1| Transcription elongation factor GreA [Taylorella equigenitalis
MCE9]
gi|317108442|gb|ADU91188.1| Transcription elongation factor GreA [Taylorella equigenitalis
MCE9]
Length = 158
Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 80/155 (51%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+P+T G ++ +EL+ + ERP +I+AI+EARA GDLSENAEY AA+E Q E R+
Sbjct: 4 LPLTKAGSIRLTEELQKLKTVERPAVIQAIAEARAQGDLSENAEYDAARERQGFIEARIK 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE +++ +++I+ ST+ +GD+I FGATV L + +SG+ YQIVGD EAD++ +SIS
Sbjct: 64 ELEGVLSNSQIIEPSTLEAGDKIVFGATVELEDLDSGELVKYQIVGDAEADIKLNTISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LIGK GD I ++ P GEK YEIL V +I
Sbjct: 124 SPVARGLIGKHEGDTIKISVPSGEKEYEILSVEYI 158
>gi|183600357|ref|ZP_02961850.1| hypothetical protein PROSTU_03920 [Providencia stuartii ATCC 25827]
gi|188020148|gb|EDU58188.1| hypothetical protein PROSTU_03920 [Providencia stuartii ATCC 25827]
Length = 158
Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T G DK+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVLGADKLREELDYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E+ ++ A+VID++ M+ + R+ FGATV+++ ++ ++ Y+IVGD EAD++ L+S+
Sbjct: 63 QEIESKLSHAQVIDVTKMTNNGRVIFGATVTVLNVDTDEELTYRIVGDDEADIKINLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE D++++ PGG+ +EIL+V +I
Sbjct: 123 NSPIARGLIGKEQDDVVTIKTPGGDVEFEILKVEYI 158
>gi|52425016|ref|YP_088153.1| transcription elongation factor GreA [Mannheimia succiniciproducens
MBEL55E]
gi|52307068|gb|AAU37568.1| GreA protein [Mannheimia succiniciproducens MBEL55E]
Length = 158
Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G + ++QEL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAELLKQELDFLKTTRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E+ ++ ++ID++ + + ++ FGATV LV + D+ YQIVGD EAD++SGL+S+
Sbjct: 63 QEIESKLSNCQIIDVTKLPNNGKVIFGATVVLVNTENDDEVTYQIVGDDEADIKSGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ + +S+ PGG+ ++I++V +I
Sbjct: 123 NSPIARGLIGKEVDETVSIVVPGGKVEFDIIEVNYI 158
>gi|88705675|ref|ZP_01103385.1| Transcription elongation factor greA [Congregibacter litoralis
KT71]
gi|88700188|gb|EAQ97297.1| Transcription elongation factor greA [Congregibacter litoralis
KT71]
Length = 158
Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T++G +++EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q+ EGR+
Sbjct: 3 KVPMTAQGEKALREELEQLKKVDRPRIVQAIAEAREHGDLKENAEYHAAREQQSFAEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A+VID++ + ++ FG TV L+ S D Y+IVGD EAD + L+S+
Sbjct: 63 MDIEGKLSHAQVIDVTAIPPTGKVIFGVTVDLINVESDDTVTYRIVGDDEADAKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIARALIGKE GD++ V APGG++ YEI QV I
Sbjct: 123 NSPIARALIGKEEGDVVVVRAPGGDREYEIDQVRHI 158
>gi|206889798|ref|YP_002248384.1| transcription elongation factor GreA [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|238058240|sp|B5YJG9|GREA_THEYD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|206741736|gb|ACI20793.1| transcription elongation factor GreA [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 158
Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 118/157 (75%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+IP+T +G++K+++EL + ERP IIKAI+EARA+GDLSENAEY AA+E Q+ E
Sbjct: 1 MTDRIPMTPEGYEKLKEELDRLIKIERPAIIKAIAEARAHGDLSENAEYHAAREKQSFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL+ + RA VID S ++ +++AFGA V +++ ++ ++K + +VG EADV++G +
Sbjct: 61 GRIQELQAKLARAYVIDPSKINQNKVAFGAKVRVIDIDTEEEKEFHLVGPDEADVKNGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ +ALIGKE+G+ +++ AP YEI+ + +
Sbjct: 121 SITSPVGKALIGKEVGEQVTIKAPAKTFNYEIISISF 157
>gi|329123413|ref|ZP_08251977.1| transcription elongation factor GreA [Haemophilus aegyptius ATCC
11116]
gi|327470995|gb|EGF16450.1| transcription elongation factor GreA [Haemophilus aegyptius ATCC
11116]
Length = 158
Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + A++ID++ M + ++ FGATV LV N+ ++ Y IVGD EAD++SGL+S+
Sbjct: 63 QEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYGIVGDDEADIKSGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158
>gi|251791044|ref|YP_003005765.1| transcription elongation factor GreA [Dickeya zeae Ech1591]
gi|247539665|gb|ACT08286.1| transcription elongation factor GreA [Dickeya zeae Ech1591]
Length = 158
Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QFPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDVTKMAANGRVIFGATVTVMNLDTEEEQTYRIVGDDEADFKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE D++++N PGG YEIL+V+++
Sbjct: 123 NSPIARGLIGKEEDDVVTINTPGGMVEYEILKVVYL 158
>gi|120556264|ref|YP_960615.1| transcription elongation factor GreA [Marinobacter aquaeolei VT8]
gi|120326113|gb|ABM20428.1| transcription elongation factor GreA [Marinobacter aquaeolei VT8]
Length = 159
Score = 157 bits (397), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 115/159 (72%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D++P+T G ++++EL+ + E+RPR+I AI++AR +GDL ENAEY AA+E Q+ E
Sbjct: 1 MADRVPMTKTGEARLREELKKLKSEDRPRVIAAIADAREHGDLKENAEYHAAREQQSFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E ++ A+VID++TM ++ FG TV LV + ++ YQIVG+ EAD+++G
Sbjct: 61 GRIQEIEGKLSVAQVIDVTTMENTGKVIFGTTVHLVNMETDEEVTYQIVGEDEADIKAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S+SSPIARALIGK GD++++ P G YEI +V +I
Sbjct: 121 LSVSSPIARALIGKNEGDVVAIRIPSGTVEYEISEVEYI 159
>gi|319897099|ref|YP_004135294.1| transcription elongation factor [Haemophilus influenzae F3031]
gi|317432603|emb|CBY80964.1| transcription elongation factor [Haemophilus influenzae F3031]
Length = 158
Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G ++++QEL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAEQLRQELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + A+VID++ M + ++ FG TV LV ++ ++ Y+IVGD EAD++SGL+S+
Sbjct: 63 QEIEGKLGNAQVIDVTKMPNNGKVIFGTTVVLVNTDTDEEVTYRIVGDDEADIKSGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158
>gi|311277845|ref|YP_003940076.1| transcription elongation factor GreA [Enterobacter cloacae SCF1]
gi|308747040|gb|ADO46792.1| transcription elongation factor GreA [Enterobacter cloacae SCF1]
Length = 158
Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 115/155 (74%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G DK+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGADKLREELEYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VIDIS M + R+ FG+TV+++ +S ++++Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDISKMPNNGRVIFGSTVTVLNLDSDEEQSYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR L+GKE D++++ PGGE YEI++V ++
Sbjct: 124 SPIARGLVGKEQDDVVTIRTPGGEVEYEIVKVDYL 158
>gi|226329694|ref|ZP_03805212.1| hypothetical protein PROPEN_03606 [Proteus penneri ATCC 35198]
gi|225202880|gb|EEG85234.1| hypothetical protein PROPEN_03606 [Proteus penneri ATCC 35198]
Length = 158
Score = 157 bits (396), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTVLGAEKLREELEYLKNVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M+ + RI FG+TV+L+ + +++ Y+IVGD EA+++ L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMNNNGRIIFGSTVTLLNVENEEEQTYRIVGDDEANIKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKEL D++ + PGG+ YE+L V +I
Sbjct: 121 SVNSPIARGLIGKELDDVVVITTPGGQVEYEVLNVEYI 158
>gi|145633182|ref|ZP_01788913.1| transcription elongation factor GreA [Haemophilus influenzae 3655]
gi|144986028|gb|EDJ92618.1| transcription elongation factor GreA [Haemophilus influenzae 3655]
Length = 157
Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+S+
Sbjct: 63 QEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SPIAR LIGKEL D +++ PGG ++I++V +
Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNY 157
>gi|94500165|ref|ZP_01306699.1| transcription elongation factor GreA [Oceanobacter sp. RED65]
gi|94427738|gb|EAT12714.1| transcription elongation factor GreA [Oceanobacter sp. RED65]
Length = 158
Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T G +++EL ++ ERP++IKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 KVPMTVDGEKALREELDQLKKVERPKVIKAIAEAREHGDLKENAEYHAAREQQGFIEGRI 62
Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A+VID++T+ ++ FG TV L++ N+ ++K YQIVG+ EAD+ +G +S
Sbjct: 63 QDIEGKLSNAQVIDVTTLPQTGKVIFGTTVRLIDANTDEEKQYQIVGEDEADIPNGKISA 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGKE GD++ V P GE YEI QVL++
Sbjct: 123 GSPIARALIGKEEGDVVVVKVPNGEIEYEIDQVLYL 158
>gi|237808999|ref|YP_002893439.1| transcription elongation factor GreA [Tolumonas auensis DSM 9187]
gi|237501260|gb|ACQ93853.1| transcription elongation factor GreA [Tolumonas auensis DSM 9187]
Length = 158
Score = 156 bits (395), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++ P+T G +K+++EL + + +RP+II+AI+EARA+GDL ENAEY AA+E Q EG
Sbjct: 1 MNQTPMTVLGAEKLREELEYLKTVQRPQIIQAIAEARAHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E +++A++ID++ + + R+ FGATV++++ ++ ++ Y+IVGD E+D++SGL+
Sbjct: 61 RIQEVEAKLSKAQIIDVTKLPKNGRVIFGATVTVLKCDTEEEITYRIVGDDESDIKSGLL 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI+SPIAR LIGKE+ D+ ++ P G+ +EI+QV +I
Sbjct: 121 SINSPIARGLIGKEVDDVATITTPAGKVDFEIVQVEYI 158
>gi|229845154|ref|ZP_04465289.1| transcription elongation factor GreA [Haemophilus influenzae
6P18H1]
gi|229811990|gb|EEP47684.1| transcription elongation factor GreA [Haemophilus influenzae
6P18H1]
Length = 158
Score = 156 bits (395), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + A++ID++ M + ++ FGATV LV ++ ++ Y+IVGD EAD++SGL+S+
Sbjct: 63 QEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTDTDEEVTYRIVGDDEADIKSGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 123 NSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158
>gi|34499256|ref|NP_903471.1| transcription elongation factor [Chromobacterium violaceum ATCC
12472]
gi|34105107|gb|AAQ61463.1| transcription elongation factor [Chromobacterium violaceum ATCC
12472]
Length = 158
Score = 156 bits (394), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 79/156 (50%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T +G + +++EL+ + ERP +I+AI+EAR++GDLSENAEY AAKE Q EGR+
Sbjct: 3 KVPLTVRGAELLKEELQRLKSVERPSVIEAIAEARSHGDLSENAEYDAAKERQAFVEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
AELE ++ A +I+ + + D R+ FGATV L++ + + YQIVGD EAD++ VS+
Sbjct: 63 AELEGKLSNAVIINPAELDADGRVVFGATVDLMDLETEESVTYQIVGDDEADIKVCKVSV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPI+RALIGKE GD+ V APGG + YE+L V +I
Sbjct: 123 NSPISRALIGKEAGDVAEVVAPGGIREYEVLDVKYI 158
>gi|261867705|ref|YP_003255627.1| transcription elongation factor GreA [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|293392110|ref|ZP_06636444.1| transcription elongation factor GreA [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|261413037|gb|ACX82408.1| transcription elongation factor GreA [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|290952644|gb|EFE02763.1| transcription elongation factor GreA [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 158
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 117/156 (75%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAQLLREELDYLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + ++VID++ + + ++ FGATV L+ N+ ++ +Y+IVGD EAD+++GL+S+
Sbjct: 63 QEIEGKLANSQVIDVTKIPNNGKVIFGATVVLLNTNTDEEVSYRIVGDDEADIKNGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GKE+ D+++++ PGG +EI++V ++
Sbjct: 123 NSPIARGLVGKEVDDVVNISTPGGTVEFEIIEVDYV 158
>gi|238787585|ref|ZP_04631383.1| Transcription elongation factor greA [Yersinia frederiksenii ATCC
33641]
gi|238724372|gb|EEQ16014.1| Transcription elongation factor greA [Yersinia frederiksenii ATCC
33641]
Length = 158
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/156 (48%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G DK+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VIDI+ M + R+ FGATV ++ +S +++ Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVDSEEEQQYRIVGDDEADFKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D++ + PGGE YEIL V ++
Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILHVDYV 158
>gi|158522232|ref|YP_001530102.1| transcription elongation factor GreA [Desulfococcus oleovorans
Hxd3]
gi|158511058|gb|ABW68025.1| transcription elongation factor GreA [Desulfococcus oleovorans
Hxd3]
Length = 164
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 114/155 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+V+ IP+T +G++K+ QEL + ERP I+AI EARA+GDLSENAE+ AAKE Q E
Sbjct: 9 VVETIPITRQGYEKLNQELSRLKAVERPANIRAIEEARAHGDLSENAEFHAAKEKQGFIE 68
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ +LE+ + A +ID ST++ DR FG T+ L ++GD+ YQ+VG E+++ +GL+
Sbjct: 69 GRINDLEHKLASANIIDPSTLTKDRAVFGCTIRLESIDTGDEVEYQLVGPDESNIDNGLI 128
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S++SP+ +A++GK GD + + APGG+++YE++++
Sbjct: 129 SVTSPLGKAILGKVPGDEVVLQAPGGKRSYELIEI 163
>gi|329118200|ref|ZP_08246910.1| transcription elongation factor GreA [Neisseria bacilliformis ATCC
BAA-1200]
gi|327465621|gb|EGF11896.1| transcription elongation factor GreA [Neisseria bacilliformis ATCC
BAA-1200]
Length = 207
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
KIP+T +G + ++ EL+ + RP +I AI+EAR++GDLSENAEY+AAKE Q EGR+
Sbjct: 52 KIPLTIRGAELLKSELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKERQGFIEGRI 111
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
AE+E+ ++ A VI+ + + + ++ FGAT+ L + +SG+ YQIVG+ EAD+++G +S+
Sbjct: 112 AEIEHKLSHAHVINPAEIHAEGKVVFGATLDLEDLDSGEHVRYQIVGEDEADIKAGKISV 171
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGKE GD+ V APGG + YEI+ V ++
Sbjct: 172 GSPIARALIGKEEGDVAEVQAPGGVREYEIVAVEYV 207
>gi|148358641|ref|YP_001249848.1| transcription elongation factor GreA [Legionella pneumophila str.
Corby]
gi|166200670|sp|A5IAV2|GREA_LEGPC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|148280414|gb|ABQ54502.1| transcription elongation factor GreA [Legionella pneumophila str.
Corby]
Length = 160
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G + +++EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEG
Sbjct: 1 MSKHPMTVEGAEALKEELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ +
Sbjct: 61 RIQELEAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SSPIARALIGKEL D ++V PGG YEI+QV +I
Sbjct: 121 SYSSPIARALIGKELDDAVTVETPGGMVEYEIIQVQYI 158
>gi|212709999|ref|ZP_03318127.1| hypothetical protein PROVALCAL_01050 [Providencia alcalifaciens DSM
30120]
gi|212687408|gb|EEB46936.1| hypothetical protein PROVALCAL_01050 [Providencia alcalifaciens DSM
30120]
Length = 158
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 117/156 (75%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T G +K+++EL + + RP II +I+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVFGANKLREELEYLKSVRRPEIIASIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E+ ++ ++VID++ M+ + R+ FGATVS++ ++ ++ Y+IVGD EAD++ L+S+
Sbjct: 63 QEIESKLSHSQVIDVTKMANNGRVIFGATVSVLNVDTDEELTYRIVGDDEADIKVNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GKE+ D++++ PGG+ +EIL+V +I
Sbjct: 123 NSPIARGLVGKEVDDVVTIKTPGGDVEFEILKVEYI 158
>gi|329910107|ref|ZP_08275233.1| Transcription elongation factor GreA [Oxalobacteraceae bacterium
IMCC9480]
gi|327546260|gb|EGF31291.1| Transcription elongation factor GreA [Oxalobacteraceae bacterium
IMCC9480]
Length = 158
Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 81/155 (52%), Positives = 110/155 (70%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+P+T G +++EL + +ERP II AISEARA GDLSENAEY AAKE Q+ EGR++
Sbjct: 4 VPITKFGAQLLKEELHRLKTKERPSIINAISEARAQGDLSENAEYDAAKERQSFIEGRIS 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LE + +++ID T+ D RI FG+TV L + +GDK YQIVG EAD++ VS++
Sbjct: 64 DLEGKLGSSQIIDPLTLEADGRIVFGSTVYLEDLETGDKVTYQIVGTDEADLKQLKVSVT 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD++ V AP G + YE+L+V +I
Sbjct: 124 SPIARALIGKVAGDVVGVQAPAGVREYEVLEVRYI 158
>gi|254448859|ref|ZP_05062315.1| GreA/GreB family elongation factor [gamma proteobacterium HTCC5015]
gi|198261549|gb|EDY85838.1| GreA/GreB family elongation factor [gamma proteobacterium HTCC5015]
Length = 159
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DK+P+T +G + +++EL + +ERP II+AI+EAR +GDL ENAEY AA+E Q E
Sbjct: 1 MTDKVPMTVEGAEAMREELTQLKSKERPEIIQAIAEAREHGDLKENAEYHAARERQGFVE 60
Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E ++ A++ID+ ++ ++ FG TV L + ++ ++K Y+IVG+ EA++Q G
Sbjct: 61 GRIKEIEGKLSYAQIIDVQSLPKSGKVVFGVTVELCDIDTEEEKTYKIVGEDEANIQQGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S +SP+AR+LIG+E GD + V PGG+ YEIL V +
Sbjct: 121 ISFTSPVARSLIGREEGDCVLVKTPGGDHEYEILAVRY 158
>gi|290473438|ref|YP_003466305.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Xenorhabdus bovienii SS-2004]
gi|289172738|emb|CBJ79509.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Xenorhabdus bovienii SS-2004]
Length = 158
Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G DK+++EL + RP+II AI++ARA+GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGADKLREELENLKNVRRPKIITAIADARAHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VIDI+ M + R+ FGATV+++ S +++ Y+IVGD EA+++ L+S+
Sbjct: 63 QEIEAKLSNAQVIDITKMINNGRVIFGATVTVLNMGSDEEQTYRIVGDDEANIKENLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D+ ++ PGG+ YE+L V ++
Sbjct: 123 NSPIARGLIGKEVDDVAVISTPGGKVEYEVLNVEYL 158
>gi|15616988|ref|NP_240201.1| transcription elongation factor GreA [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681740|ref|YP_002468126.1| transcription elongation factor GreA [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682295|ref|YP_002468679.1| transcription elongation factor GreA [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471441|ref|ZP_05635440.1| transcription elongation factor GreA [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|11386814|sp|P57464|GREA_BUCAI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799549|sp|B8D9G7|GREA_BUCA5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799550|sp|B8D7R9|GREA_BUCAT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|25321409|pir||G84974 transcription elongation factor greA [imported] - Buchnera sp.
(strain APS)
gi|10039053|dbj|BAB13087.1| transcription elongation factor greA [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219622028|gb|ACL30184.1| transcription elongation factor GreA [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624583|gb|ACL30738.1| transcription elongation factor GreA [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086121|gb|ADP66203.1| transcription elongation factor GreA [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086694|gb|ADP66775.1| transcription elongation factor GreA [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
gi|311087279|gb|ADP67359.1| transcription elongation factor GreA [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087791|gb|ADP67870.1| transcription elongation factor GreA [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 159
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++ IP+T +G +K+++EL+ + RPRII AI+EAR +GDL ENAEY +A+E Q+ E
Sbjct: 1 MINLIPMTVRGAEKLRRELKKLKSINRPRIIAAIAEAREHGDLKENAEYHSAREEQSFCE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E ++ +++ID++ +S + R+ FG+TVS++ + +K Y+IVGD E+D + L
Sbjct: 61 GRIKEIELKLSNSQIIDVTKISNNGRVIFGSTVSILNIKNNEKFTYRIVGDDESDFKKNL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SI+SPIAR LIGKE+ D++ + PGG+ Y+IL++ +I
Sbjct: 121 ISINSPIARGLIGKEINDVVIICTPGGDVEYKILKINYI 159
>gi|238020364|ref|ZP_04600790.1| hypothetical protein GCWU000324_00244 [Kingella oralis ATCC 51147]
gi|237867344|gb|EEP68350.1| hypothetical protein GCWU000324_00244 [Kingella oralis ATCC 51147]
Length = 158
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
KIP+T G +K++ EL+ + RP +I AI+EAR++GDLSENAEY+AAK+ Q EGR+
Sbjct: 3 KIPLTVAGAEKLKAELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKDRQGFIEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
AELE+ ++ A++ID + + +I FGATV++ + + ++ YQIVGD EAD++ G +S+
Sbjct: 63 AELESKLSHAQIIDPKEIHAEGKIVFGATVTVSDLETDEEATYQIVGDDEADIKIGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIARA+IGKE GD+ V AP G + Y+IL V +I
Sbjct: 123 NSPIARAMIGKEEGDVAEVQAPSGVREYDILNVQYI 158
>gi|284006659|emb|CBA71921.1| transcription elongation factor [Arsenophonus nasoniae]
Length = 179
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 113/159 (71%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ +IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q E
Sbjct: 21 LMKQIPMTVRGAEKLRKELEFLKNIRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCE 80
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E ++ A+VID++ M + R+ FGATV++ + + + Y+IVGD EAD++ L
Sbjct: 81 GRIQEIEAKLSHAQVIDVTKMKNEGRVIFGATVTVFNVTTNEDQIYRIVGDDEADIKENL 140
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIAR LIGK + D+ + PGGE YEIL+V +I
Sbjct: 141 ISVNSPIARGLIGKTMDDVAVITTPGGEVEYEILKVEYI 179
>gi|238750117|ref|ZP_04611620.1| Transcription elongation factor greA [Yersinia rohdei ATCC 43380]
gi|238711661|gb|EEQ03876.1| Transcription elongation factor greA [Yersinia rohdei ATCC 43380]
Length = 158
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T G DK+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVGGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VIDIS M + R+ FGATV ++ +S +++ Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDISKMPNNGRVIFGATVRVLNVDSEEEQQYRIVGDDEADFKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D++ + PGGE YEIL+V ++
Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILKVDYV 158
>gi|260596192|ref|YP_003208763.1| transcription elongation factor GreA [Cronobacter turicensis z3032]
gi|260215369|emb|CBA27383.1| Transcription elongation factor greA [Cronobacter turicensis z3032]
Length = 158
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 116/155 (74%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELEYLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VIDI+ M + R+ FG+TV+++ ++ +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDITKMPNNGRVIFGSTVTVLNLDTDEEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR L+GKEL D++++N PGG+ +EI++V ++
Sbjct: 124 SPIARGLVGKELDDVVTINTPGGQVEFEIIKVDYL 158
>gi|52842830|ref|YP_096629.1| transcription elongation factor GreA [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54295463|ref|YP_127878.1| transcription elongation factor GreA [Legionella pneumophila str.
Lens]
gi|54298613|ref|YP_124982.1| transcription elongation factor GreA [Legionella pneumophila str.
Paris]
gi|81367742|sp|Q5WTH5|GREA_LEGPL RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|81369784|sp|Q5X1R6|GREA_LEGPA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|81376728|sp|Q5ZS95|GREA_LEGPH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|52629941|gb|AAU28682.1| transcription elongation factor GreA [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|53752398|emb|CAH13830.1| transcription elongation factor GreA [Legionella pneumophila str.
Paris]
gi|53755295|emb|CAH16789.1| transcription elongation factor GreA [Legionella pneumophila str.
Lens]
Length = 160
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G + ++ EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEG
Sbjct: 1 MSKHPMTVEGAEALKAELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ +
Sbjct: 61 RIQELEAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SSPIARALIGKEL D ++V PGG YEI+QV +I
Sbjct: 121 SYSSPIARALIGKELDDAVTVETPGGMVEYEIIQVQYI 158
>gi|149375765|ref|ZP_01893533.1| Transcription elongation factor [Marinobacter algicola DG893]
gi|149359890|gb|EDM48346.1| Transcription elongation factor [Marinobacter algicola DG893]
Length = 159
Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/159 (47%), Positives = 116/159 (72%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D++P+T G ++++EL+ + E+RPR+I AIS+AR +GDL ENAEY AA+E Q+ E
Sbjct: 1 MADRVPMTKAGEIRLREELQKLKSEDRPRVIAAISDAREHGDLKENAEYHAAREQQSFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E ++ A+VID++T+ ++ FG TV L+ ++ ++ +YQIVG+ EAD+++G
Sbjct: 61 GRIQEIEGKLSAAQVIDVNTIENTGKVIFGTTVQLLNVDTDEQVSYQIVGEDEADIKAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SISSPIARAL+GK GD+++V P G YEI QV I
Sbjct: 121 LSISSPIARALVGKSEGDVVAVRVPSGTVEYEIEQVEHI 159
>gi|152979122|ref|YP_001344751.1| transcription elongation factor GreA [Actinobacillus succinogenes
130Z]
gi|150840845|gb|ABR74816.1| transcription elongation factor GreA [Actinobacillus succinogenes
130Z]
Length = 158
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAEQLREELDFLKNTRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E+ ++ ++ID++ + + ++ FG+TV LV ++ D+ YQIVGD EAD+++GL+S+
Sbjct: 63 QEIESKLSNGQIIDVTKIPNNGKVIFGSTVVLVNVDTDDEATYQIVGDDEADIKAGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D +++ PGG ++I++V +I
Sbjct: 123 NSPIARGLIGKEVDDTVNIVTPGGTVEFDIIEVNYI 158
>gi|156935703|ref|YP_001439619.1| transcription elongation factor GreA [Cronobacter sakazakii ATCC
BAA-894]
gi|156533957|gb|ABU78783.1| hypothetical protein ESA_03572 [Cronobacter sakazakii ATCC BAA-894]
Length = 158
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 115/155 (74%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELEFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VIDI+ M + R+ FG+TV+++ ++ ++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDITKMPNNGRVIFGSTVTVLNLDTDEELTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR L+GKEL D++++N PGG+ +EI++V ++
Sbjct: 124 SPIARGLVGKELDDVVTINTPGGQVEFEIIKVDYL 158
>gi|268592834|ref|ZP_06127055.1| transcription elongation factor GreA [Providencia rettgeri DSM
1131]
gi|291311620|gb|EFE52073.1| transcription elongation factor GreA [Providencia rettgeri DSM
1131]
Length = 158
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T G DK+++EL + + RP II +I+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVLGADKLREELEFLKSVRRPEIIASIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VID++ M + R+ FGATV+++ ++ ++ Y+IVGD EAD++ L+S+
Sbjct: 63 QEIEGKLSHAQVIDVTKMVNNGRVIFGATVTVLNVDTDEELTYRIVGDDEADIKINLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GKE+ D +S+ PGG+ +EIL+V +I
Sbjct: 123 NSPIARGLVGKEVDDAVSIKTPGGDVEFEILKVEYI 158
>gi|198282924|ref|YP_002219245.1| transcription elongation factor GreA [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665891|ref|YP_002425127.1| transcription elongation factor GreA [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247445|gb|ACH83038.1| transcription elongation factor GreA [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518104|gb|ACK78690.1| transcription elongation factor GreA [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 158
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/159 (53%), Positives = 110/159 (69%), Gaps = 2/159 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DKIP+T G +++ EL + +RP +I+AI+EARA GDLSENAEY AAKE Q E
Sbjct: 1 MNDKIPMTVIGAQRLRDELHRLKTVDRPTVIEAIAEARAKGDLSENAEYDAAKEQQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E+ + RA+VID + +G +I F ATV L E G++ YQIVGD EAD++
Sbjct: 61 GRIREVEDYLARAQVIDPKQLNTGGKIVFAATVEL-EDAEGNEVTYQIVGDAEADLKENK 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SISSPIARALIGK GD + V APGG + Y IL V +I
Sbjct: 120 ISISSPIARALIGKHEGDPVEVRAPGGTREYTILAVRYI 158
>gi|119897674|ref|YP_932887.1| putative transcription elongation factor [Azoarcus sp. BH72]
gi|119670087|emb|CAL94000.1| putative transcription elongation factor [Azoarcus sp. BH72]
Length = 158
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T G +K++ EL + +RP +I AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MNKTPLTIAGAEKLRLELHRLKTVDRPNVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E + A++ID + + D R FGATV L + +SG YQIVG+ EAD++ +
Sbjct: 61 RIAEVEGKLANAQIIDPTLLDADGRCVFGATVELEDMDSGQVVTYQIVGEDEADIKEFKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GDI V APGG + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKYAGDIAEVQAPGGIREYEIIDVRYI 158
>gi|307824612|ref|ZP_07654836.1| GreA/GreB family elongation factor [Methylobacter tundripaludum
SV96]
gi|307734266|gb|EFO05119.1| GreA/GreB family elongation factor [Methylobacter tundripaludum
SV96]
Length = 158
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T KG +K++ EL + RPRI+ +I+ ARA+GDL ENAEY AAKE Q+ EG
Sbjct: 1 MNKVPLTVKGAEKLRAELEELKSVVRPRIVASIATARAHGDLKENAEYHAAKEQQSFAEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++E+E ++ A++IDI+ + + ++ FGATV + + S K YQIVG+ EA+++ G +
Sbjct: 61 RISEIEGKLSNAQIIDITKVDANGKVVFGATVEIEDIESERKVTYQIVGEDEANIKEGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SPIARALIGKE+ D+++V APGG YEI+ + +I
Sbjct: 121 SIGSPIARALIGKEVEDVVTVKAPGGNVDYEIISIEYI 158
>gi|332290209|ref|YP_004421061.1| transcription elongation factor GreA [Gallibacterium anatis UMN179]
gi|330433105|gb|AEC18164.1| transcription elongation factor GreA [Gallibacterium anatis UMN179]
Length = 158
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G + +++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGANLLREELDYLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A++ID++ ++ + R+ FGATV LV + D+ YQIVGD EAD++ GL+S+
Sbjct: 63 QEIEGKLSNAQIIDVTKITNNGRVIFGATVVLVNVETDDEVTYQIVGDDEADIKQGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SPIAR LIGKE+ D +++ PGG+ ++I+ V +
Sbjct: 123 NSPIARGLIGKEVDDNVTITTPGGKVEFDIISVEY 157
>gi|162451868|ref|YP_001614235.1| transcription elongation factor GreA [Sorangium cellulosum 'So ce
56']
gi|161162450|emb|CAN93755.1| transcription elongation factor GreA [Sorangium cellulosum 'So ce
56']
Length = 158
Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 116/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K+P+T +G ++++E+R ++ + P+++K I AR +GDLSENAEY AAKE Q +
Sbjct: 1 MSEKVPMTPEGQARLREEMRRLKEIDLPQVVKDIGTAREHGDLSENAEYHAAKERQGMIV 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ LE ++RAEVID S +SG ++ FGA V L ++ +++++QIVG +EAD++ G +
Sbjct: 61 ARISYLEQTLSRAEVIDPSKLSGSKVQFGAKVKLANVDTDEEQSFQIVGPEEADLKVGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARAL+G E+G+ + VN P G +TYEIL+V +
Sbjct: 121 SIASPLARALLGHEVGEEVRVNMPAGPRTYEILEVSY 157
>gi|315634153|ref|ZP_07889442.1| transcription elongation factor GreA [Aggregatibacter segnis ATCC
33393]
gi|315477403|gb|EFU68146.1| transcription elongation factor GreA [Aggregatibacter segnis ATCC
33393]
Length = 158
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAQLLREELDYLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + ++VID++ + + ++ FGATV L N+ ++ Y+IVGD EAD+++GL+S+
Sbjct: 63 QEIEGKLGNSQVIDVTKIPNNGKVIFGATVVLFNTNTDEEVTYRIVGDDEADIKNGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GKE+ D++++ PGG +EI++V ++
Sbjct: 123 NSPIARGLVGKEVDDVVNITTPGGVVEFEIIEVEYV 158
>gi|296104892|ref|YP_003615038.1| transcription elongation factor GreA [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059351|gb|ADF64089.1| transcription elongation factor GreA [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 158
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++++ PGGE YEI++V ++
Sbjct: 124 SPIARGLIGKEQDDVVTIRTPGGEVEYEIIKVEYL 158
>gi|189184202|ref|YP_001937987.1| GreA protein [Orientia tsutsugamushi str. Ikeda]
gi|238692019|sp|B3CTQ6|GREA_ORITI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189180973|dbj|BAG40753.1| GreA protein [Orientia tsutsugamushi str. Ikeda]
Length = 159
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 113/155 (72%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T KGF K++QEL+ + ER +I IS AR +GDLSENAEY+AAKE Q LN+ ++
Sbjct: 3 RFPITIKGFHKLEQELKHLKYVERLKITTDISTAREFGDLSENAEYKAAKERQLLNDKKI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LEN + AEVI+I+ ++ + + FGA V L+++++ + YQIVG+ EAD+ L+SI+
Sbjct: 63 YDLENKLANAEVIEITKINSNSVKFGARVVLLDRDTEKEVVYQIVGEYEADITQNLISIA 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIA+ALIGK+ GDII V P G + YE+L+V ++
Sbjct: 123 SPIAQALIGKKAGDIIEVITPKGGRFYELLKVQYV 157
>gi|261345170|ref|ZP_05972814.1| transcription elongation factor GreA [Providencia rustigianii DSM
4541]
gi|282566862|gb|EFB72397.1| transcription elongation factor GreA [Providencia rustigianii DSM
4541]
Length = 158
Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVFGANKLREELEYLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E+ ++ ++VIDI+ M + R+ FGATV+++ ++ ++ Y+IVGD EAD++ L+S+
Sbjct: 63 QEIESKLSHSQVIDITKMVNNGRVIFGATVTVLNLDTDEELTYRIVGDDEADIKVNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GKE+ D++++ PGG+ +EIL+V +I
Sbjct: 123 NSPIARGLVGKEVDDVVTIKTPGGDVEFEILKVEYI 158
>gi|297180938|gb|ADI17141.1| transcription elongation factor [uncultured gamma proteobacterium
HF0070_08D07]
Length = 157
Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 113/152 (74%), Gaps = 1/152 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T G + ++ EL R+ E R I+K I+EARA+GDL ENAEY AA+E Q+LNEGR+
Sbjct: 3 IPMTVHGAESLRAELAERKGEIRQSIVKDIAEARAHGDLKENAEYHAAREQQSLNEGRIQ 62
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E+ + A++ID++ + ++ FGATV++ ++ S D+ YQIVG+ EAD++ G +S+
Sbjct: 63 DIESKLADAQIIDVTKIPATGKVVFGATVTIADEESDDETTYQIVGEDEADLKFGKISVL 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPI+RALIGK+ GD+ SVN+P G K YEI++V
Sbjct: 123 SPISRALIGKDTGDVASVNSPSGVKDYEIIKV 154
>gi|319787362|ref|YP_004146837.1| transcription elongation factor GreA [Pseudoxanthomonas suwonensis
11-1]
gi|317465874|gb|ADV27606.1| transcription elongation factor GreA [Pseudoxanthomonas suwonensis
11-1]
Length = 154
Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG ++++EL + +RP +I AI+EAR +GDL ENAEY AA+E Q EGR+ +L
Sbjct: 1 MTLKGAQRLREELDHLKTVKRPEVIAAIAEARGHGDLKENAEYHAAREQQGFIEGRIKQL 60
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E+ ++ A++ID++ + +G ++ FGATV+L + + ++ YQIVGD EAD++ GL++ISSP
Sbjct: 61 ESELSHADLIDVTKLNAGSKVVFGATVTLADVETDEEVRYQIVGDLEADIKQGLIAISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALIGKE GD I ++AP G++ YEI+ V ++
Sbjct: 121 VARALIGKEEGDAIVIDAPAGQREYEIVSVEYL 153
>gi|58584571|ref|YP_198144.1| transcription elongation factor, GreA [Wolbachia endosymbiont
strain TRS of Brugia malayi]
gi|58418887|gb|AAW70902.1| Transcription elongation factor, GreA [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 164
Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ K P+T +GF+ IQ EL + +EE+P II+AIS+AR GDLSENAEY AA+E E
Sbjct: 5 IIKKFPITREGFEHIQAELE-KLKEEKPSIIQAISDARDQGDLSENAEYHAARERLGFIE 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEADVQS 117
GR+ ELEN ++ AE+I++ +SGD + FGATV+L N D + Y+IVG+ EADV
Sbjct: 64 GRIMELENKLSHAEIIEVKNLSGDSVMFGATVTLSMLNDDDSEVEYIYKIVGEYEADVSK 123
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ +
Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPSGEKLYKIVKIEF 163
>gi|145298034|ref|YP_001140875.1| transcription elongation factor [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142850806|gb|ABO89127.1| transcription elongation factor [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 158
Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 119/158 (75%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ P+T +G +K+++EL + + E RP+II+AI++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNHTPMTVRGAEKLREELDYLKSELRPQIIEAIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A+VID++ ++ + R+ FGATV+L++ + ++ Y+IVGD E+D++ ++
Sbjct: 61 RIQEIESKLSNAQVIDVTKIANNGRVIFGATVTLLKSETEEEVVYRIVGDDESDIKQNMI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGKE+ D++ V P G+ YEIL V ++
Sbjct: 121 SVNSPIARALIGKEVDDVVIVKTPAGDVEYEILAVAYL 158
>gi|317050953|ref|YP_004112069.1| transcription elongation factor GreA [Desulfurispirillum indicum
S5]
gi|316946037|gb|ADU65513.1| transcription elongation factor GreA [Desulfurispirillum indicum
S5]
Length = 156
Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 113/154 (73%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+IP+T G + +++EL ++ ER ++ + I+ ARA+GDL ENAEY AA+E Q+ EG
Sbjct: 1 MDRIPMTKTGLENLRKELEHLKKNERHQVKEEIAVARAHGDLKENAEYHAAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ + RAEVID ST++ D++ FG+ V+L+ + + Y +VGD EAD +S L++
Sbjct: 61 RIAELEDKVLRAEVIDPSTLASDKVLFGSQVTLLNLETDSEVVYTVVGDDEADYKSNLIA 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+SSP+A++LIGK +GD + VNAP G YEIL++
Sbjct: 121 VSSPLAQSLIGKRVGDEVVVNAPKGAVEYEILKI 154
>gi|295097667|emb|CBK86757.1| transcription elongation factor GreA [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 158
Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDNDEEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++++ PGGE YEI++V ++
Sbjct: 124 SPIARGLIGKEQDDVVTIRTPGGEVEYEIIKVEYL 158
>gi|152972105|ref|YP_001337251.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238896688|ref|YP_002921433.1| transcription elongation factor GreA [Klebsiella pneumoniae
NTUH-K2044]
gi|262042740|ref|ZP_06015894.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|329997717|ref|ZP_08302900.1| transcription elongation factor GreA [Klebsiella sp. MS 92-3]
gi|150956954|gb|ABR78984.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238549015|dbj|BAH65366.1| transcription elongation factor [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259039965|gb|EEW41082.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328538926|gb|EGF64984.1| transcription elongation factor GreA [Klebsiella sp. MS 92-3]
Length = 158
Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++++ PGGE YEI +V ++
Sbjct: 124 SPIARGLIGKEQDDVVTIRTPGGEVEYEITKVEYL 158
>gi|189425137|ref|YP_001952314.1| transcription elongation factor GreA [Geobacter lovleyi SZ]
gi|238692107|sp|B3E3H5|GREA_GEOLS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189421396|gb|ACD95794.1| transcription elongation factor GreA [Geobacter lovleyi SZ]
Length = 158
Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 112/157 (71%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + IP+T + ++ +Q+EL+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E
Sbjct: 1 MSNNIPLTKESYEALQEELKRLIREERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL+ + RA V+D++ + D++ FGATV+L + S ++ Y+IVG+ EAD++ G +
Sbjct: 61 GRIQELQGKLARAHVVDLTGLKPDKVVFGATVTLYDTASEEEITYKIVGEDEADIKLGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+ +ALIG +L D + V P G K YEI+++ +
Sbjct: 121 SCTSPVGKALIGHKLDDSVKVKVPAGTKEYEIIEIKY 157
>gi|300721528|ref|YP_003710803.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Xenorhabdus nematophila ATCC 19061]
gi|297628020|emb|CBJ88569.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Xenorhabdus nematophila ATCC 19061]
Length = 158
Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G DK+++EL + RP+II AI++AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGADKLREELEHLRNVRRPQIITAIADAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VID++ M+ + R+ FGATV+++ +S +++ Y+IVGD EA+++ L+S+
Sbjct: 63 QEIEAKLSNAQVIDVTKMTNNGRVIFGATVTVLNVDSDEEQTYRIVGDDEANIKENLLSV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D + + PGG+ YE+L V ++
Sbjct: 123 NSPIARGLIGKEVDDAVVIATPGGQVEYEVLNVDYL 158
>gi|85373967|ref|YP_458029.1| transcription elongation factor GreA [Erythrobacter litoralis
HTCC2594]
gi|84787050|gb|ABC63232.1| transcription elongation factor [Erythrobacter litoralis HTCC2594]
Length = 155
Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 117/157 (74%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+ ++G++++ +L+ + E RP+++ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 1 MEKVPMLAEGYERLTADLKALRAE-RPKVVDAIEEARAHGDLSENAEYHAAKERQGQIEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++A++E+ +TRA++ID +T+SGD+I FGATV+L++++ K YQIVG EAD G +S
Sbjct: 60 QIADIEDRVTRAQIIDPATLSGDKIVFGATVTLLDEDDKPVK-YQIVGQTEADAAKGRIS 118
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSPI RALIGK++GD I V P G+K Y + +V ++
Sbjct: 119 YSSPIGRALIGKQVGDEIEVTVPSGDKFYLVDKVEFV 155
>gi|78222984|ref|YP_384731.1| transcription elongation factor GreA [Geobacter metallireducens
GS-15]
gi|78194239|gb|ABB32006.1| GreA/GreB family elongation factor [Geobacter metallireducens
GS-15]
Length = 159
Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 72/159 (45%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +P+T + +D +Q+EL+ +EERPR+I+ I+EAR++GDLSENAEY AAK Q E
Sbjct: 1 MSYSVPMTKESYDSLQEELKRLIREERPRVIQDIAEARSHGDLSENAEYDAAKNRQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL+ + RA V+D+S + D++ FGATV+L + S ++ Y+IVG++EAD++ G +
Sbjct: 61 GRIQELQGKLARAHVVDLSGLKPDKVVFGATVTLYDTTSEEEVTYKIVGEEEADIKLGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158
S +SP+ +ALIG +L D + + P G K YEI+ + +I
Sbjct: 121 SCTSPVGKALIGHKLDDSVKIKVPSGSVKEYEIIDIKYI 159
>gi|296284018|ref|ZP_06862016.1| transcription elongation factor GreA [Citromicrobium bathyomarinum
JL354]
Length = 155
Score = 153 bits (386), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 119/157 (75%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+ ++G++++ +L+ + E RP+I+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 1 MEKVPMLAEGYERLTTDLKALRAE-RPKIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AE+E+ +TRA++ID ST+SGD++ FGATV+L++++ K YQIVG EAD +S +S
Sbjct: 60 QIAEIEDRVTRAQIIDPSTLSGDKVVFGATVTLLDEDDKPIK-YQIVGQTEADAKSARIS 118
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ARALIGK++G+ + V P G+K Y + ++ +I
Sbjct: 119 YNSPLARALIGKKVGEEVEVTVPSGDKFYLVDKIEFI 155
>gi|161506138|ref|YP_001573250.1| transcription elongation factor GreA [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160867485|gb|ABX24108.1| hypothetical protein SARI_04326 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 158
Score = 153 bits (386), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDVTKMANNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++ + PGG+ YE+L+V ++
Sbjct: 124 SPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 158
>gi|71906579|ref|YP_284166.1| transcription elongation factor GreA [Dechloromonas aromatica RCB]
gi|71846200|gb|AAZ45696.1| GreA/GreB family elongation factor [Dechloromonas aromatica RCB]
Length = 172
Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T G +K+++EL + +RP +I AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 15 MSKVPLTVAGAEKLREELHRLKTVDRPWVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 74
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A++ID + D R FGATV + +++SG YQIVG+ EAD+++G +
Sbjct: 75 RIQEVEGKLSNAQIIDPKLLDADGRCVFGATVQMEDQDSGAGATYQIVGEDEADIKAGKI 134
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SP+ARALIGK GDI V APGG + YEI+ V +
Sbjct: 135 SVNSPMARALIGKYAGDIAQVQAPGGIREYEIIDVRY 171
>gi|330830899|ref|YP_004393851.1| transcription elongation factor GreA [Aeromonas veronii B565]
gi|328806035|gb|AEB51234.1| transcription elongation factor GreA [Aeromonas veronii B565]
Length = 153
Score = 153 bits (386), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 73/153 (47%), Positives = 115/153 (75%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +K+++EL + + E RP+II+AI++AR +GDL ENAEY AA+E Q EGR+ E+
Sbjct: 1 MTVRGAEKLREELDYLKTELRPQIIEAIADAREHGDLKENAEYHAAREQQGFCEGRIQEI 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A+VID++ M+ + R+ FGATV+L++ + ++ Y+IVGD EAD++ L+S++SP
Sbjct: 61 EAKLSNAQVIDVTKMTNNGRVIFGATVTLLKSETEEEVVYRIVGDDEADIKQNLISVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARALIGKE+ D+ V P G+ YE+L+V +I
Sbjct: 121 IARALIGKEVDDVAIVKTPAGDVEYEVLEVAYI 153
>gi|254456594|ref|ZP_05070023.1| transcription elongation factor [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083596|gb|EDZ61022.1| transcription elongation factor [Candidatus Pelagibacter sp.
HTCC7211]
Length = 158
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK P+T G +K+++EL + ++++RP I+ AI+EAR++GDL ENAEY AAKE Q+ NEG
Sbjct: 1 MDKEPITLNGLNKLKEELIFLKEKKRPEIVAAIAEARSHGDLKENAEYHAAKEEQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+++II RA VID++ ++ D ++ FG+TV L ++G+K +Y+IVG EAD++ L+
Sbjct: 61 RITEIDDIIARANVIDVTKLNNDGKVIFGSTVFLENLDNGEKISYKIVGKDEADLKQKLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPI R LIGK D++ + P G K +EI V +I
Sbjct: 121 FFQSPIGRGLIGKNKNDLVEITTPAGIKNFEIKDVQYI 158
>gi|300310712|ref|YP_003774804.1| transcription elongation factor protein [Herbaspirillum seropedicae
SmR1]
gi|124483342|emb|CAM32544.1| Transcription elongation factor protein [Herbaspirillum
seropedicae]
gi|300073497|gb|ADJ62896.1| transcription elongation factor protein [Herbaspirillum seropedicae
SmR1]
Length = 158
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 75/155 (48%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+P+T +G + +++EL + ++RP +I AI+EARA GDLSENAEY++AKE Q EGR+A
Sbjct: 4 VPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LE + A+++D + ++ + R+ F +TV L +SG+K YQIVG EAD++ VS++
Sbjct: 64 DLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKVSVT 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGK GD+++V AP G K YEIL+V ++
Sbjct: 124 SPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158
>gi|254522230|ref|ZP_05134285.1| transcriptional elongation factor [Stenotrophomonas sp. SKA14]
gi|219719821|gb|EED38346.1| transcriptional elongation factor [Stenotrophomonas sp. SKA14]
Length = 152
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 111/150 (74%), Gaps = 1/150 (0%)
Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
KG K++ EL + +RP++I AI+EAR +GDL ENAEY AA+E Q EGR+ +LE
Sbjct: 2 KGAQKLRDELDHLKSVKRPKVIAAIAEAREHGDLKENAEYHAAREEQGFIEGRIKQLEGE 61
Query: 70 ITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
++ AE+ID+S + +G ++ FGA+V+L + + ++K YQIVGD EAD++ GL++ISSP+AR
Sbjct: 62 LSHAEIIDVSKLNAGSKVVFGASVTLADVETDEEKKYQIVGDLEADIKLGLIAISSPVAR 121
Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVLWI 158
A+IGK GD I ++AP G++ YEI+ V ++
Sbjct: 122 AMIGKLEGDSIVIDAPAGQREYEIVSVSYV 151
>gi|170695455|ref|ZP_02886600.1| transcription elongation factor GreA [Burkholderia graminis C4D1M]
gi|170139646|gb|EDT07829.1| transcription elongation factor GreA [Burkholderia graminis C4D1M]
Length = 141
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 80/134 (59%), Positives = 99/134 (73%), Gaps = 1/134 (0%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD- 84
ERP +I +I+EARA GDLSENAEY AAKE Q EGR+AE+E+ + A+VID S + D
Sbjct: 8 ERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIAEIESKLAGAQVIDPSQVEADG 67
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
R+ FGATV L + +SG YQIVGD EAD+ GL+SISSPIARALIGK GD+ SV AP
Sbjct: 68 RVVFGATVELEDLDSGASVKYQIVGDDEADIDHGLISISSPIARALIGKSEGDVASVQAP 127
Query: 145 GGEKTYEILQVLWI 158
GG + YEI+ V ++
Sbjct: 128 GGVREYEIIAVSYV 141
>gi|145589200|ref|YP_001155797.1| transcription elongation factor GreA [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047606|gb|ABP34233.1| transcription elongation factor GreA [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 158
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 108/155 (69%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G + +++EL + ERP +I AISEARA GDLSENAEY AAKE Q EGR+
Sbjct: 4 IPITKRGAELLKEELHRLKHIERPAVIIAISEARAQGDLSENAEYDAAKEKQGFIEGRIQ 63
Query: 65 ELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE+ ++ A+VID +++ + FGATV L + G K YQIVGD EAD+ +SIS
Sbjct: 64 ELESKLSAAQVIDPASLDVTGLVVFGATVDLEDLEDGTKLTYQIVGDDEADIALNKISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALI KE GD+++V+AP G + EIL V +I
Sbjct: 124 SPIARALISKEEGDVVAVHAPAGNREVEILAVRYI 158
>gi|39996379|ref|NP_952330.1| transcription elongation factor GreA [Geobacter sulfurreducens PCA]
gi|39983259|gb|AAR34653.1| transcription elongation factor GreA [Geobacter sulfurreducens PCA]
gi|298505389|gb|ADI84112.1| transcription elongation factor GreA [Geobacter sulfurreducens
KN400]
Length = 158
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 111/158 (70%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M IP+T + ++ +Q+EL+ +EERPR+I+ I+EAR +GDLSENAEY AAK Q E
Sbjct: 1 MSHTIPMTKESYEALQEELKRLIREERPRVIQDIAEARGHGDLSENAEYDAAKNRQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL+ + RA V+D++ M D++ FGATV+L + + ++ Y+IVG++EAD++ G +
Sbjct: 61 GRILELQGKLARAYVVDLTGMKPDKVVFGATVTLYDTATEEEVTYKIVGEEEADIKLGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S +SP+ +ALIG +L D + + P G K YEI+ + ++
Sbjct: 121 SCTSPVGKALIGHKLDDSVKIKVPSGLKEYEIIDIKYV 158
>gi|85058346|ref|YP_454048.1| transcription elongation factor [Sodalis glossinidius str.
'morsitans']
gi|84778866|dbj|BAE73643.1| transcription elongation factor [Sodalis glossinidius str.
'morsitans']
Length = 158
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T G +K+++EL + + RP II +I+EAR GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLCGAEKLREELEYLKSIRRPEIILSIAEAREQGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ ++ R+ FGATVS+ +S +K+ ++IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKLAPSGRVIFGATVSVENLDSEEKQTFRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI+SPIAR L+GKE GDI+ + PGGE YEIL+V ++
Sbjct: 121 SINSPIARGLVGKEEGDIVVIKTPGGEVEYEILKVEYL 158
>gi|148284685|ref|YP_001248775.1| transcription elongation factor [Orientia tsutsugamushi str.
Boryong]
gi|229485768|sp|A5CE64|GREA_ORITB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|146740124|emb|CAM80312.1| transcription elongation factor [Orientia tsutsugamushi str.
Boryong]
Length = 159
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 112/155 (72%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T KGF K++QEL+ + ER +I IS AR +GDLSENAEY+AAKE Q LN+ ++
Sbjct: 3 RFPITIKGFHKLEQELKHLKYVERLKITTDISTAREFGDLSENAEYKAAKERQLLNDKKI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LEN + AEVI+I+ ++ + + FGA V L++ ++ + YQIVG+ EAD+ L+SI+
Sbjct: 63 YDLENKLANAEVIEITKINSNSVKFGARVVLLDLDTEKEVVYQIVGEYEADITQNLISIA 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIA+ALIGK+ GDII V P G + YE+L+V ++
Sbjct: 123 SPIAQALIGKKAGDIIEVITPKGGRFYELLKVQYV 157
>gi|319942670|ref|ZP_08016977.1| transcription elongation factor [Sutterella wadsworthensis 3_1_45B]
gi|319803753|gb|EFW00688.1| transcription elongation factor [Sutterella wadsworthensis 3_1_45B]
Length = 158
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/157 (50%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T+ G K++ EL + ++ RP ++ AI+EAR GDLSENAEY AA+E Q EG
Sbjct: 1 MNRIPITAAGAAKLKAELDYLKKTARPNVVAAIAEAREKGDLSENAEYDAAREEQGHIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE I +VID T++ GDRI FGATV+L ++ YQIVGD EAD++ L+
Sbjct: 61 RIAELEGKIPALQVIDPKTVAAGDRIVFGATVTLYDEEEDSNVTYQIVGDDEADIKKNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+SSPIARALIGK GD + AP G+ T+E+ V +
Sbjct: 121 SVSSPIARALIGKSEGDTVVFMAPKGKVTFEVETVEY 157
>gi|332306411|ref|YP_004434262.1| transcription elongation factor GreA [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332173740|gb|AEE22994.1| transcription elongation factor GreA [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 158
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T+KG D +++EL+ + +RP IIK+I+EAR +GDL ENAEY AA+E Q+ EGR+ +
Sbjct: 5 PMTAKGADMLREELQHLKSVKRPEIIKSIAEAREHGDLKENAEYHAAREQQSFCEGRIQD 64
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E ++ A++ID++ M + ++ FG TV+++ S D+ Y+IVGD EAD+++ L+S+SS
Sbjct: 65 IEGKLSNAQIIDVTKMPNNGKVIFGTTVTILNLESDDEITYKIVGDDEADIKNNLISVSS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
PIAR LIGK+L D++++ P G +EI++V ++
Sbjct: 125 PIARGLIGKQLDDVVTIQTPKGAIEFEIIEVEYV 158
>gi|16762061|ref|NP_457678.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16766595|ref|NP_462210.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29143550|ref|NP_806892.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56415228|ref|YP_152303.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62181807|ref|YP_218224.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161616306|ref|YP_001590271.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167552055|ref|ZP_02345808.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167995305|ref|ZP_02576395.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168231907|ref|ZP_02656965.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168237998|ref|ZP_02663056.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168243132|ref|ZP_02668064.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168262691|ref|ZP_02684664.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168463479|ref|ZP_02697396.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168819635|ref|ZP_02831635.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194442444|ref|YP_002042555.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194451049|ref|YP_002047327.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194472290|ref|ZP_03078274.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194737942|ref|YP_002116247.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197248717|ref|YP_002148223.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197262177|ref|ZP_03162251.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197364158|ref|YP_002143795.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198244973|ref|YP_002217271.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200388684|ref|ZP_03215296.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204931178|ref|ZP_03221972.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205354200|ref|YP_002228001.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207858547|ref|YP_002245198.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213425423|ref|ZP_03358173.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213646994|ref|ZP_03377047.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|224585094|ref|YP_002638893.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238910092|ref|ZP_04653929.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289825810|ref|ZP_06544978.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|54037219|sp|P64282|GREA_SALTI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54041329|sp|P64281|GREA_SALTY RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|25321438|pir||AB0903 transcription elongation factor STY3477 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16421857|gb|AAL22169.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16504364|emb|CAD07816.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29139185|gb|AAO70752.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56129485|gb|AAV78991.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62129440|gb|AAX67143.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161365670|gb|ABX69438.1| hypothetical protein SPAB_04114 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401107|gb|ACF61329.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194409353|gb|ACF69572.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194458654|gb|EDX47493.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194713444|gb|ACF92665.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195633532|gb|EDX51946.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197095635|emb|CAR61203.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197212420|gb|ACH49817.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197240432|gb|EDY23052.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197289064|gb|EDY28433.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197939489|gb|ACH76822.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199605782|gb|EDZ04327.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204319945|gb|EDZ05151.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205273981|emb|CAR38987.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205323254|gb|EDZ11093.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205327000|gb|EDZ13764.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205333717|gb|EDZ20481.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205337869|gb|EDZ24633.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205343382|gb|EDZ30146.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205348488|gb|EDZ35119.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206710350|emb|CAR34708.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224469622|gb|ACN47452.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261248464|emb|CBG26301.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267995496|gb|ACY90381.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159848|emb|CBW19367.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312914323|dbj|BAJ38297.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320087743|emb|CBY97507.1| Transcription elongation factor greA Transcript cleavage factor
greA [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|321225982|gb|EFX51036.1| Transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322615302|gb|EFY12223.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618339|gb|EFY15230.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622856|gb|EFY19700.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322626822|gb|EFY23619.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322631391|gb|EFY28151.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322635342|gb|EFY32056.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322643341|gb|EFY39905.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647087|gb|EFY43588.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322648890|gb|EFY45335.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655082|gb|EFY51393.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322657685|gb|EFY53953.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322664181|gb|EFY60379.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322667464|gb|EFY63626.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674712|gb|EFY70804.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675655|gb|EFY71728.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682291|gb|EFY78314.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322684894|gb|EFY80892.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322716294|gb|EFZ07865.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323131658|gb|ADX19088.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323195901|gb|EFZ81072.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199018|gb|EFZ84115.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204282|gb|EFZ89291.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323207629|gb|EFZ92576.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211318|gb|EFZ96162.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323214740|gb|EFZ99489.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221220|gb|EGA05646.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323224039|gb|EGA08332.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323230312|gb|EGA14431.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233288|gb|EGA17382.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323239325|gb|EGA23375.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242424|gb|EGA26450.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323246934|gb|EGA30900.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323254133|gb|EGA37953.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255250|gb|EGA39027.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262713|gb|EGA46269.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323264023|gb|EGA47531.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323269409|gb|EGA52864.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326625049|gb|EGE31394.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326629321|gb|EGE35664.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
gi|332990156|gb|AEF09139.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 158
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++ + PGG+ YE+L+V ++
Sbjct: 124 SPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 158
>gi|188493925|ref|ZP_03001195.1| transcription elongation factor GreA [Escherichia coli 53638]
gi|188489124|gb|EDU64227.1| transcription elongation factor GreA [Escherichia coli 53638]
Length = 158
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSNEEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++ + PGGE +E+++V ++
Sbjct: 124 SPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158
>gi|152992894|ref|YP_001358615.1| transcription elongation factor GreA [Sulfurovum sp. NBC37-1]
gi|166201123|sp|A6Q9U9|GREA_SULNB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|151424755|dbj|BAF72258.1| transcription elongation factor GreA [Sulfurovum sp. NBC37-1]
Length = 162
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 109/154 (70%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+ + + K+ +EL + ER I K I EAR GDL ENAEY AAK+ Q L E R+
Sbjct: 3 KEPMLEETYRKLSEELEQLKSVERGVIAKVIDEARELGDLKENAEYHAAKDKQGLMEARI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL +++ RA+V+D ST S DR++FG+TV LV++++ ++ Y IVG QE++ QSGL+SI
Sbjct: 63 AELTDVVGRAQVVDPSTFSHDRVSFGSTVVLVDQDTDEEVRYTIVGGQESNPQSGLISIQ 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+AR LIGKE GD + + P G+KTY+I ++L+
Sbjct: 123 SPMARVLIGKEEGDEVELTLPSGKKTYDIEEILY 156
>gi|307129375|ref|YP_003881391.1| transcription elongation factor [Dickeya dadantii 3937]
gi|306526904|gb|ADM96834.1| transcription elongation factor [Dickeya dadantii 3937]
Length = 158
Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QFPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDVTKMAANGRVIFGATVTVMNVDTEEEQTYRIVGDDEADFKLNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE D+++++ PGG YEIL+V ++
Sbjct: 123 NSPIARGLIGKEEDDVVAISTPGGVVEYEILKVEYL 158
>gi|110833180|ref|YP_692039.1| transcription elongation factor GreA [Alcanivorax borkumensis SK2]
gi|110646291|emb|CAL15767.1| transcription elongation factor GreA [Alcanivorax borkumensis SK2]
Length = 170
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 116/159 (72%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ ++P+T+KG +++EL ++E+RPRI AI+EAR +GDL ENAEY AA+E Q E
Sbjct: 12 IMQRVPMTAKGAKALREELEKLKKEDRPRISAAIAEAREHGDLKENAEYHAAREQQGFCE 71
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+A++E ++ A++IDI + ++ FG TV++++ ++ + K YQIVGD EA+++ G
Sbjct: 72 GRIADIEGKLSNAQIIDIQDIENTGKVIFGVTVTILDVDTDETKVYQIVGDDEANIKEGK 131
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIAR LIG+E GD++ ++ PGG + YE+ QV I
Sbjct: 132 LSVNSPIARGLIGREEGDVVQIDTPGGTREYEVDQVEHI 170
>gi|87200244|ref|YP_497501.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
gi|123722531|sp|Q2G656|GREA_NOVAD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|87135925|gb|ABD26667.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
Length = 158
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 117/157 (74%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+K+P+ ++G++K+ EL+ + EERPRI+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 VEKLPMLAEGYEKLTAELKALR-EERPRIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+A+LE+ ++RA++ID +T+SGD+I FGATV+L++ + K YQIVG EAD + G++S
Sbjct: 63 TIADLEDRVSRAQIIDPTTLSGDKIIFGATVTLLDDDEKPVK-YQIVGPYEADAKKGMIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ +ALIG+++ + I V P G+K Y + ++ +I
Sbjct: 122 YNSPLGKALIGRKVDEEIEVTVPSGDKFYLVQKIEFI 158
>gi|218779092|ref|YP_002430410.1| transcription elongation factor GreA [Desulfatibacillum
alkenivorans AK-01]
gi|218760476|gb|ACL02942.1| transcription elongation factor GreA [Desulfatibacillum
alkenivorans AK-01]
Length = 155
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 111/154 (72%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++ P+T +G +++Q EL + ERPR I+ I EARA+GDLSENAEY AAKE Q G
Sbjct: 1 MERTPITPEGLERLQNELVQLKTVERPRNIQDIEEARAHGDLSENAEYHAAKERQGFIAG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE + A+VID ST GD FGATV L ++G++ +YQ++G E+++Q+G +S
Sbjct: 61 RIAELEYKVASADVIDPSTQKGDTAVFGATVVLENIDTGEEVSYQLLGPDESNIQAGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
++SP+ +AL+GK+ GD + V PGG++ +E++++
Sbjct: 121 VTSPLGKALVGKKPGDEVKVQTPGGQRHFEVVEI 154
>gi|206577730|ref|YP_002236407.1| transcription elongation factor GreA [Klebsiella pneumoniae 342]
gi|288933391|ref|YP_003437450.1| transcription elongation factor GreA [Klebsiella variicola At-22]
gi|290511558|ref|ZP_06550927.1| transcription elongation factor GreA [Klebsiella sp. 1_1_55]
gi|206566788|gb|ACI08564.1| transcription elongation factor GreA [Klebsiella pneumoniae 342]
gi|288888120|gb|ADC56438.1| transcription elongation factor GreA [Klebsiella variicola At-22]
gi|289776551|gb|EFD84550.1| transcription elongation factor GreA [Klebsiella sp. 1_1_55]
Length = 158
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDYLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++++ PGGE YEI +V ++
Sbjct: 124 SPIARGLIGKEQDDVVTIRTPGGEVEYEITKVEYL 158
>gi|254512527|ref|ZP_05124594.1| transcription elongation factor GreA [Rhodobacteraceae bacterium
KLH11]
gi|221536238|gb|EEE39226.1| transcription elongation factor GreA [Rhodobacteraceae bacterium
KLH11]
Length = 156
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/156 (49%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ EL+ + ERP II+AI+ AR GDL ENAEY +A+E Q EG
Sbjct: 1 MEKIPMTPAGNAALEAELKNLKSVERPAIIEAIASARELGDLKENAEYHSAREKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ A+VID S ++G I FGA V+LV++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGILSLADVIDPSKLAG-AIKFGAKVTLVDEDTDEEKTWQIVGEYEANIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGKE GD + V PGG ++YE+L + +
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGVRSYEVLSIQY 155
>gi|94498550|ref|ZP_01305105.1| GreA/GreB family elongation factor [Sphingomonas sp. SKA58]
gi|94421993|gb|EAT07039.1| GreA/GreB family elongation factor [Sphingomonas sp. SKA58]
Length = 158
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+K+P+ G+DK+ +LR + ERP I+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 VEKMPMLQMGYDKLNAQLR-ELKAERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ +LE+ ++RA+VID T+SG++I FGATV+L++++ K YQIVG EAD ++G++S
Sbjct: 63 TINDLEDKLSRAQVIDPKTLSGNKIIFGATVTLMDEDDKPVK-YQIVGQAEADAKAGMIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSP+ RALIG+E+GD + V+ P G+K Y + ++ ++
Sbjct: 122 YSSPLGRALIGREVGDEVEVSVPSGDKFYLVDKIEFL 158
>gi|320174545|gb|EFW49681.1| Transcription elongation factor GreA [Shigella dysenteriae CDC
74-1112]
Length = 158
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++ + PGGE +E+++V ++
Sbjct: 124 SPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158
>gi|307295447|ref|ZP_07575283.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum
L-1]
gi|306878486|gb|EFN09706.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum
L-1]
Length = 158
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 116/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+K+P+ G+DK+ +LR + ERP I+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 VEKMPMLQMGYDKLNAQLR-ELKAERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+A+LE+ ++RA++ID +T+SGD+I FGATV+L++++ K YQIVG EAD + G++S
Sbjct: 63 TIADLEDKLSRAQIIDPTTLSGDKIVFGATVTLLDEDEKPVK-YQIVGQAEADAKVGMIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ RALIG+++G+ + V+ P G+K Y + ++ +I
Sbjct: 122 YNSPLGRALIGRQIGEEVEVSVPSGDKFYLVDKIDFI 158
>gi|326387386|ref|ZP_08208995.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
DSM 19370]
gi|326208042|gb|EGD58850.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
DSM 19370]
Length = 158
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 115/158 (72%), Gaps = 4/158 (2%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+K+P+ +G++K+ EL+ +EERP+I+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 VEKLPMLQEGYEKLTAELKA-LREERPKIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGLV 120
+ +LE+ I+RA++ID +T+SGDRI FGATV+L+ + DK YQIVG EADV+ G +
Sbjct: 63 SIGDLEDKISRAQIIDPTTLSGDRIVFGATVTLL--DDADKPVRYQIVGLAEADVKRGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S +SP+ RALIG+++ D + V P G+K Y + ++ +I
Sbjct: 121 SYNSPLGRALIGRKVDDEVEVTVPSGDKFYVVEKIEFI 158
>gi|24114470|ref|NP_708980.1| transcription elongation factor GreA [Shigella flexneri 2a str.
301]
gi|26249764|ref|NP_755804.1| transcription elongation factor GreA [Escherichia coli CFT073]
gi|30064519|ref|NP_838690.1| transcription elongation factor GreA [Shigella flexneri 2a str.
2457T]
gi|38704147|ref|NP_312087.2| transcription elongation factor GreA [Escherichia coli O157:H7 str.
Sakai]
gi|89109944|ref|AP_003724.1| transcription elongation factor [Escherichia coli str. K-12 substr.
W3110]
gi|90111554|ref|NP_417648.4| transcript cleavage factor [Escherichia coli str. K-12 substr.
MG1655]
gi|91212603|ref|YP_542589.1| transcription elongation factor GreA [Escherichia coli UTI89]
gi|110643421|ref|YP_671151.1| transcription elongation factor GreA [Escherichia coli 536]
gi|110807047|ref|YP_690567.1| transcription elongation factor GreA [Shigella flexneri 5 str.
8401]
gi|117625475|ref|YP_858798.1| transcription elongation factor GreA [Escherichia coli APEC O1]
gi|157156605|ref|YP_001464656.1| transcription elongation factor GreA [Escherichia coli E24377A]
gi|157162664|ref|YP_001459982.1| transcription elongation factor GreA [Escherichia coli HS]
gi|161367516|ref|NP_289755.2| transcription elongation factor GreA [Escherichia coli O157:H7
EDL933]
gi|161950034|ref|YP_404844.2| transcription elongation factor GreA [Shigella dysenteriae Sd197]
gi|161984851|ref|YP_409528.2| transcription elongation factor GreA [Shigella boydii Sb227]
gi|161986440|ref|YP_312137.2| transcription elongation factor GreA [Shigella sonnei Ss046]
gi|168752874|ref|ZP_02777896.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4113]
gi|168754163|ref|ZP_02779170.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4401]
gi|168769037|ref|ZP_02794044.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4486]
gi|168781325|ref|ZP_02806332.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4076]
gi|168786067|ref|ZP_02811074.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC869]
gi|170018569|ref|YP_001723523.1| transcription elongation factor GreA [Escherichia coli ATCC 8739]
gi|170082716|ref|YP_001732036.1| transcription elongation factor [Escherichia coli str. K-12 substr.
DH10B]
gi|170683303|ref|YP_001745453.1| transcription elongation factor GreA [Escherichia coli SMS-3-5]
gi|187733737|ref|YP_001881904.1| transcription elongation factor GreA [Shigella boydii CDC 3083-94]
gi|194430233|ref|ZP_03062731.1| transcription elongation factor GreA [Escherichia coli B171]
gi|195938400|ref|ZP_03083782.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4024]
gi|208812520|ref|ZP_03253849.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4045]
gi|208818669|ref|ZP_03258989.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4042]
gi|209400428|ref|YP_002272651.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4115]
gi|209920656|ref|YP_002294740.1| transcription elongation factor GreA [Escherichia coli SE11]
gi|215488497|ref|YP_002330928.1| transcription elongation factor GreA [Escherichia coli O127:H6 str.
E2348/69]
gi|217326880|ref|ZP_03442963.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
TW14588]
gi|218550464|ref|YP_002384255.1| transcription elongation factor GreA [Escherichia fergusonii ATCC
35469]
gi|218555751|ref|YP_002388664.1| transcription elongation factor GreA [Escherichia coli IAI1]
gi|218560251|ref|YP_002393164.1| transcription elongation factor GreA [Escherichia coli S88]
gi|218691471|ref|YP_002399683.1| transcription elongation factor GreA [Escherichia coli ED1a]
gi|218696886|ref|YP_002404553.1| transcription elongation factor GreA [Escherichia coli 55989]
gi|218701950|ref|YP_002409579.1| transcription elongation factor GreA [Escherichia coli IAI39]
gi|218706801|ref|YP_002414320.1| transcription elongation factor GreA [Escherichia coli UMN026]
gi|227887902|ref|ZP_04005707.1| transcription elongation factor GreA [Escherichia coli 83972]
gi|237706067|ref|ZP_04536548.1| transcription elongation factor greA [Escherichia sp. 3_2_53FAA]
gi|238902283|ref|YP_002928079.1| transcription elongation factor [Escherichia coli BW2952]
gi|253771985|ref|YP_003034816.1| transcription elongation factor GreA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254038346|ref|ZP_04872404.1| transcription elongation factor GreA [Escherichia sp. 1_1_43]
gi|254163123|ref|YP_003046231.1| transcription elongation factor GreA [Escherichia coli B str.
REL606]
gi|254795130|ref|YP_003079967.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
TW14359]
gi|256018900|ref|ZP_05432765.1| transcription elongation factor GreA [Shigella sp. D9]
gi|256024244|ref|ZP_05438109.1| transcription elongation factor GreA [Escherichia sp. 4_1_40B]
gi|260845994|ref|YP_003223772.1| transcription elongation factor GreA [Escherichia coli O103:H2 str.
12009]
gi|260857308|ref|YP_003231199.1| transcription elongation factor GreA [Escherichia coli O26:H11 str.
11368]
gi|261228192|ref|ZP_05942473.1| transcription elongation factor [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255048|ref|ZP_05947581.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
FRIK966]
gi|291284555|ref|YP_003501373.1| Transcription elongation factor greA [Escherichia coli O55:H7 str.
CB9615]
gi|293406790|ref|ZP_06650716.1| transcription elongation factor greA [Escherichia coli FVEC1412]
gi|293412553|ref|ZP_06655276.1| transcription elongation factor greA [Escherichia coli B354]
gi|293416611|ref|ZP_06659250.1| transcription elongation factor greA [Escherichia coli B185]
gi|293449515|ref|ZP_06663936.1| transcription elongation factor greA [Escherichia coli B088]
gi|297519952|ref|ZP_06938338.1| transcription elongation factor GreA [Escherichia coli OP50]
gi|298382531|ref|ZP_06992128.1| transcription elongation factor greA [Escherichia coli FVEC1302]
gi|300817566|ref|ZP_07097782.1| transcription elongation factor GreA [Escherichia coli MS 107-1]
gi|300823855|ref|ZP_07103979.1| transcription elongation factor GreA [Escherichia coli MS 119-7]
gi|300897946|ref|ZP_07116324.1| transcription elongation factor GreA [Escherichia coli MS 198-1]
gi|300904368|ref|ZP_07122220.1| transcription elongation factor GreA [Escherichia coli MS 84-1]
gi|300926078|ref|ZP_07141897.1| transcription elongation factor GreA [Escherichia coli MS 182-1]
gi|300929873|ref|ZP_07145318.1| transcription elongation factor GreA [Escherichia coli MS 187-1]
gi|300938093|ref|ZP_07152870.1| transcription elongation factor GreA [Escherichia coli MS 21-1]
gi|300948832|ref|ZP_07162899.1| transcription elongation factor GreA [Escherichia coli MS 116-1]
gi|300955767|ref|ZP_07168111.1| transcription elongation factor GreA [Escherichia coli MS 175-1]
gi|300980086|ref|ZP_07174836.1| transcription elongation factor GreA [Escherichia coli MS 200-1]
gi|300990828|ref|ZP_07179355.1| transcription elongation factor GreA [Escherichia coli MS 45-1]
gi|301022036|ref|ZP_07185979.1| transcription elongation factor GreA [Escherichia coli MS 69-1]
gi|301047975|ref|ZP_07195018.1| transcription elongation factor GreA [Escherichia coli MS 185-1]
gi|301301761|ref|ZP_07207895.1| transcription elongation factor GreA [Escherichia coli MS 124-1]
gi|301326392|ref|ZP_07219750.1| transcription elongation factor GreA [Escherichia coli MS 78-1]
gi|301644892|ref|ZP_07244863.1| transcription elongation factor GreA [Escherichia coli MS 146-1]
gi|306816477|ref|ZP_07450609.1| transcription elongation factor GreA [Escherichia coli NC101]
gi|307139867|ref|ZP_07499223.1| transcription elongation factor GreA [Escherichia coli H736]
gi|307313114|ref|ZP_07592740.1| GreA/GreB family elongation factor [Escherichia coli W]
gi|309793759|ref|ZP_07688185.1| transcription elongation factor GreA [Escherichia coli MS 145-7]
gi|312968481|ref|ZP_07782690.1| transcription elongation factor GreA domain protein [Escherichia
coli 2362-75]
gi|312972545|ref|ZP_07786719.1| transcription elongation factor GreA domain protein [Escherichia
coli 1827-70]
gi|331643879|ref|ZP_08345010.1| transcription elongation factor GreA [Escherichia coli H736]
gi|331648981|ref|ZP_08350069.1| transcription elongation factor GreA [Escherichia coli M605]
gi|331654785|ref|ZP_08355785.1| transcription elongation factor GreA [Escherichia coli M718]
gi|331659468|ref|ZP_08360410.1| transcription elongation factor GreA [Escherichia coli TA206]
gi|331664793|ref|ZP_08365698.1| transcription elongation factor GreA [Escherichia coli TA143]
gi|331670008|ref|ZP_08370853.1| transcription elongation factor GreA [Escherichia coli TA271]
gi|331674713|ref|ZP_08375472.1| transcription elongation factor GreA [Escherichia coli TA280]
gi|331679260|ref|ZP_08379932.1| transcription elongation factor GreA [Escherichia coli H591]
gi|331684828|ref|ZP_08385420.1| transcription elongation factor GreA [Escherichia coli H299]
gi|332279988|ref|ZP_08392401.1| transcription elongation factor GreA [Shigella sp. D9]
gi|62288136|sp|P0A6W5|GREA_ECOLI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|62288137|sp|P0A6W6|GREA_ECOL6 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|62288138|sp|P0A6W7|GREA_ECO57 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|62288139|sp|P0A6W8|GREA_SHIFL RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|157831240|pdb|1GRJ|A Chain A, Grea Transcript Cleavage Factor From Escherichia Coli
gi|26110192|gb|AAN82378.1|AE016767_138 Transcription elongation factor greA [Escherichia coli CFT073]
gi|41611|emb|CAA38521.1| unnamed protein product [Escherichia coli K-12]
gi|746399|gb|AAA97506.1| transcription elongation factor [Escherichia coli]
gi|24053653|gb|AAN44687.1| transcription elongation factor [Shigella flexneri 2a str. 301]
gi|30042778|gb|AAP18501.1| transcription elongation factor [Shigella flexneri 2a str. 2457T]
gi|85675975|dbj|BAE77225.1| transcription elongation factor [Escherichia coli str. K12 substr.
W3110]
gi|87082225|gb|AAC76213.2| transcript cleavage factor [Escherichia coli str. K-12 substr.
MG1655]
gi|91074177|gb|ABE09058.1| transcription elongation factor GreA (transcript cleavage factor
GreA) [Escherichia coli UTI89]
gi|110345013|gb|ABG71250.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Escherichia coli 536]
gi|110616595|gb|ABF05262.1| transcription elongation factor [Shigella flexneri 5 str. 8401]
gi|115514599|gb|ABJ02674.1| transcription elongation factor GreA [Escherichia coli APEC O1]
gi|157068344|gb|ABV07599.1| transcription elongation factor GreA [Escherichia coli HS]
gi|157078635|gb|ABV18343.1| transcription elongation factor GreA [Escherichia coli E24377A]
gi|169753497|gb|ACA76196.1| transcription elongation factor GreA [Escherichia coli ATCC 8739]
gi|169890551|gb|ACB04258.1| transcription elongation factor [Escherichia coli str. K-12 substr.
DH10B]
gi|170521021|gb|ACB19199.1| transcription elongation factor GreA [Escherichia coli SMS-3-5]
gi|187430729|gb|ACD10003.1| transcription elongation factor GreA [Shigella boydii CDC 3083-94]
gi|188013493|gb|EDU51615.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4113]
gi|189001112|gb|EDU70098.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4076]
gi|189358744|gb|EDU77163.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4401]
gi|189361832|gb|EDU80251.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4486]
gi|189373995|gb|EDU92411.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC869]
gi|194411734|gb|EDX28058.1| transcription elongation factor GreA [Escherichia coli B171]
gi|208733797|gb|EDZ82484.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4045]
gi|208738792|gb|EDZ86474.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4042]
gi|209161828|gb|ACI39261.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4115]
gi|209913915|dbj|BAG78989.1| transcription elongation factor [Escherichia coli SE11]
gi|215266569|emb|CAS11008.1| transcription elongation factor [Escherichia coli O127:H6 str.
E2348/69]
gi|217319247|gb|EEC27672.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
TW14588]
gi|218353618|emb|CAU99817.1| transcription elongation factor [Escherichia coli 55989]
gi|218358005|emb|CAQ90651.1| transcription elongation factor [Escherichia fergusonii ATCC 35469]
gi|218362519|emb|CAR00143.1| transcription elongation factor [Escherichia coli IAI1]
gi|218367020|emb|CAR04791.1| transcription elongation factor [Escherichia coli S88]
gi|218371936|emb|CAR19792.1| transcription elongation factor [Escherichia coli IAI39]
gi|218429035|emb|CAR09981.2| transcription elongation factor [Escherichia coli ED1a]
gi|218433898|emb|CAR14815.1| transcription elongation factor [Escherichia coli UMN026]
gi|222034898|emb|CAP77641.1| Transcription elongation factor greA [Escherichia coli LF82]
gi|226839970|gb|EEH71991.1| transcription elongation factor GreA [Escherichia sp. 1_1_43]
gi|226899107|gb|EEH85366.1| transcription elongation factor greA [Escherichia sp. 3_2_53FAA]
gi|227835298|gb|EEJ45764.1| transcription elongation factor GreA [Escherichia coli 83972]
gi|238863677|gb|ACR65675.1| transcription elongation factor [Escherichia coli BW2952]
gi|242378724|emb|CAQ33514.1| transcription elongation factor GreA [Escherichia coli BL21(DE3)]
gi|253323029|gb|ACT27631.1| transcription elongation factor GreA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975024|gb|ACT40695.1| transcription elongation factor GreA [Escherichia coli B str.
REL606]
gi|253979180|gb|ACT44850.1| transcription elongation factor GreA [Escherichia coli BL21(DE3)]
gi|254594530|gb|ACT73891.1| transcription elongation factor [Escherichia coli O157:H7 str.
TW14359]
gi|257755957|dbj|BAI27459.1| transcription elongation factor GreA [Escherichia coli O26:H11 str.
11368]
gi|257761141|dbj|BAI32638.1| transcription elongation factor GreA [Escherichia coli O103:H2 str.
12009]
gi|260447792|gb|ACX38214.1| transcription elongation factor GreA [Escherichia coli DH1]
gi|281180223|dbj|BAI56553.1| transcription elongation factor [Escherichia coli SE15]
gi|281602564|gb|ADA75548.1| Transcription elongation factor greA [Shigella flexneri 2002017]
gi|284923204|emb|CBG36298.1| transcription elongation factor [Escherichia coli 042]
gi|290764428|gb|ADD58389.1| Transcription elongation factor greA [Escherichia coli O55:H7 str.
CB9615]
gi|291322605|gb|EFE62034.1| transcription elongation factor greA [Escherichia coli B088]
gi|291426796|gb|EFE99828.1| transcription elongation factor greA [Escherichia coli FVEC1412]
gi|291431967|gb|EFF04950.1| transcription elongation factor greA [Escherichia coli B185]
gi|291469324|gb|EFF11815.1| transcription elongation factor greA [Escherichia coli B354]
gi|294491555|gb|ADE90311.1| transcription elongation factor GreA [Escherichia coli IHE3034]
gi|298277671|gb|EFI19187.1| transcription elongation factor greA [Escherichia coli FVEC1302]
gi|300300160|gb|EFJ56545.1| transcription elongation factor GreA [Escherichia coli MS 185-1]
gi|300307860|gb|EFJ62380.1| transcription elongation factor GreA [Escherichia coli MS 200-1]
gi|300317362|gb|EFJ67146.1| transcription elongation factor GreA [Escherichia coli MS 175-1]
gi|300358338|gb|EFJ74208.1| transcription elongation factor GreA [Escherichia coli MS 198-1]
gi|300397751|gb|EFJ81289.1| transcription elongation factor GreA [Escherichia coli MS 69-1]
gi|300403691|gb|EFJ87229.1| transcription elongation factor GreA [Escherichia coli MS 84-1]
gi|300407048|gb|EFJ90586.1| transcription elongation factor GreA [Escherichia coli MS 45-1]
gi|300417867|gb|EFK01178.1| transcription elongation factor GreA [Escherichia coli MS 182-1]
gi|300451688|gb|EFK15308.1| transcription elongation factor GreA [Escherichia coli MS 116-1]
gi|300456914|gb|EFK20407.1| transcription elongation factor GreA [Escherichia coli MS 21-1]
gi|300462206|gb|EFK25699.1| transcription elongation factor GreA [Escherichia coli MS 187-1]
gi|300523623|gb|EFK44692.1| transcription elongation factor GreA [Escherichia coli MS 119-7]
gi|300529864|gb|EFK50926.1| transcription elongation factor GreA [Escherichia coli MS 107-1]
gi|300842742|gb|EFK70502.1| transcription elongation factor GreA [Escherichia coli MS 124-1]
gi|300846911|gb|EFK74671.1| transcription elongation factor GreA [Escherichia coli MS 78-1]
gi|301076798|gb|EFK91604.1| transcription elongation factor GreA [Escherichia coli MS 146-1]
gi|305850042|gb|EFM50501.1| transcription elongation factor GreA [Escherichia coli NC101]
gi|306907025|gb|EFN37533.1| GreA/GreB family elongation factor [Escherichia coli W]
gi|307555275|gb|ADN48050.1| transcription elongation factor GreA [Escherichia coli ABU 83972]
gi|307625220|gb|ADN69524.1| transcription elongation factor GreA [Escherichia coli UM146]
gi|308122716|gb|EFO59978.1| transcription elongation factor GreA [Escherichia coli MS 145-7]
gi|309703607|emb|CBJ02947.1| transcription elongation factor [Escherichia coli ETEC H10407]
gi|310334922|gb|EFQ01127.1| transcription elongation factor GreA domain protein [Escherichia
coli 1827-70]
gi|312286699|gb|EFR14610.1| transcription elongation factor GreA domain protein [Escherichia
coli 2362-75]
gi|312947738|gb|ADR28565.1| transcription elongation factor GreA [Escherichia coli O83:H1 str.
NRG 857C]
gi|313648576|gb|EFS13018.1| transcription elongation factor GreA domain protein [Shigella
flexneri 2a str. 2457T]
gi|315062487|gb|ADT76814.1| transcription elongation factor [Escherichia coli W]
gi|315137767|dbj|BAJ44926.1| transcription elongation factor greA [Escherichia coli DH1]
gi|315257106|gb|EFU37074.1| transcription elongation factor GreA [Escherichia coli MS 85-1]
gi|315288955|gb|EFU48353.1| transcription elongation factor GreA [Escherichia coli MS 110-3]
gi|315294888|gb|EFU54227.1| transcription elongation factor GreA [Escherichia coli MS 153-1]
gi|315297888|gb|EFU57158.1| transcription elongation factor GreA [Escherichia coli MS 16-3]
gi|315617264|gb|EFU97873.1| transcription elongation factor GreA domain protein [Escherichia
coli 3431]
gi|320181456|gb|EFW56374.1| Transcription elongation factor GreA [Shigella boydii ATCC 9905]
gi|320186668|gb|EFW61392.1| Transcription elongation factor GreA [Shigella flexneri CDC 796-83]
gi|320189534|gb|EFW64193.1| Transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC1212]
gi|320194666|gb|EFW69296.1| Transcription elongation factor GreA [Escherichia coli WV_060327]
gi|320202095|gb|EFW76670.1| Transcription elongation factor GreA [Escherichia coli EC4100B]
gi|320640252|gb|EFX09824.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
G5101]
gi|320645549|gb|EFX14558.1| transcription elongation factor GreA [Escherichia coli O157:H- str.
493-89]
gi|320650859|gb|EFX19316.1| transcription elongation factor GreA [Escherichia coli O157:H- str.
H 2687]
gi|320656240|gb|EFX24152.1| transcription elongation factor GreA [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320661930|gb|EFX29338.1| transcription elongation factor GreA [Escherichia coli O55:H7 str.
USDA 5905]
gi|320666765|gb|EFX33744.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
LSU-61]
gi|323162873|gb|EFZ48708.1| transcription elongation factor GreA domain protein [Escherichia
coli E128010]
gi|323165141|gb|EFZ50931.1| transcription elongation factor GreA domain protein [Shigella
sonnei 53G]
gi|323183135|gb|EFZ68533.1| transcription elongation factor GreA domain protein [Escherichia
coli 1357]
gi|323189198|gb|EFZ74482.1| transcription elongation factor GreA domain protein [Escherichia
coli RN587/1]
gi|323376925|gb|ADX49193.1| transcription elongation factor GreA [Escherichia coli KO11]
gi|323936125|gb|EGB32419.1| transcription elongation protein GreA [Escherichia coli E1520]
gi|323941719|gb|EGB37898.1| transcription elongation proteinGreA [Escherichia coli E482]
gi|323946965|gb|EGB42981.1| transcription elongation protein GreA [Escherichia coli H120]
gi|323951300|gb|EGB47175.1| transcription elongation proteinGreA [Escherichia coli H252]
gi|323957672|gb|EGB53386.1| transcription elongation proteinGreA [Escherichia coli H263]
gi|323961164|gb|EGB56778.1| transcription elongation proteinGreA [Escherichia coli H489]
gi|323966361|gb|EGB61795.1| transcription elongation proteinGreA [Escherichia coli M863]
gi|323970256|gb|EGB65527.1| transcription elongation proteinGreA [Escherichia coli TA007]
gi|323979102|gb|EGB74180.1| transcription elongation proteinGreA [Escherichia coli TW10509]
gi|324008752|gb|EGB77971.1| transcription elongation factor GreA [Escherichia coli MS 57-2]
gi|324012130|gb|EGB81349.1| transcription elongation factor GreA [Escherichia coli MS 60-1]
gi|324018294|gb|EGB87513.1| transcription elongation factor GreA [Escherichia coli MS 117-3]
gi|324115215|gb|EGC09179.1| transcription elongation proteinGreA [Escherichia fergusonii B253]
gi|324119546|gb|EGC13428.1| transcription elongation proteinGreA [Escherichia coli E1167]
gi|325498762|gb|EGC96621.1| transcription elongation factor GreA [Escherichia fergusonii
ECD227]
gi|326337881|gb|EGD61715.1| Transcription elongation factor GreA [Escherichia coli O157:H7 str.
1125]
gi|326347451|gb|EGD71176.1| Transcription elongation factor GreA [Escherichia coli O157:H7 str.
1044]
gi|330909235|gb|EGH37749.1| transcription elongation factor GreA [Escherichia coli AA86]
gi|331037350|gb|EGI09574.1| transcription elongation factor GreA [Escherichia coli H736]
gi|331042728|gb|EGI14870.1| transcription elongation factor GreA [Escherichia coli M605]
gi|331048167|gb|EGI20244.1| transcription elongation factor GreA [Escherichia coli M718]
gi|331054050|gb|EGI26079.1| transcription elongation factor GreA [Escherichia coli TA206]
gi|331058041|gb|EGI30023.1| transcription elongation factor GreA [Escherichia coli TA143]
gi|331062921|gb|EGI34835.1| transcription elongation factor GreA [Escherichia coli TA271]
gi|331068152|gb|EGI39548.1| transcription elongation factor GreA [Escherichia coli TA280]
gi|331073325|gb|EGI44648.1| transcription elongation factor GreA [Escherichia coli H591]
gi|331078443|gb|EGI49649.1| transcription elongation factor GreA [Escherichia coli H299]
gi|332086244|gb|EGI91402.1| transcription elongation factor GreA domain protein [Shigella
boydii 5216-82]
gi|332086457|gb|EGI91604.1| transcription elongation factor GreA domain protein [Shigella
dysenteriae 155-74]
gi|332090708|gb|EGI95802.1| transcription elongation factor GreA domain protein [Shigella
boydii 3594-74]
gi|332102340|gb|EGJ05686.1| transcription elongation factor GreA [Shigella sp. D9]
gi|332345137|gb|AEE58471.1| transcription elongation factor protein GreA [Escherichia coli
UMNK88]
gi|332752340|gb|EGJ82730.1| transcription elongation factor GreA domain protein [Shigella
flexneri 4343-70]
gi|332752866|gb|EGJ83251.1| transcription elongation factor GreA domain protein [Shigella
flexneri K-671]
gi|332754345|gb|EGJ84711.1| transcription elongation factor GreA domain protein [Shigella
flexneri 2747-71]
gi|332765177|gb|EGJ95404.1| transcription elongation factor GreA [Shigella flexneri 2930-71]
gi|332998823|gb|EGK18419.1| transcription elongation factor GreA domain protein [Shigella
flexneri VA-6]
gi|332999259|gb|EGK18845.1| transcription elongation factor GreA domain protein [Shigella
flexneri K-272]
gi|333000243|gb|EGK19826.1| transcription elongation factor GreA domain protein [Shigella
flexneri K-218]
gi|333014600|gb|EGK33947.1| transcription elongation factor GreA domain protein [Shigella
flexneri K-304]
gi|333014983|gb|EGK34327.1| transcription elongation factor GreA domain protein [Shigella
flexneri K-227]
Length = 158
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++ + PGGE +E+++V ++
Sbjct: 124 SPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158
>gi|261493679|ref|ZP_05990198.1| transcription elongation factor GreA [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261494346|ref|ZP_05990840.1| transcription elongation factor GreA [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261309995|gb|EEY11204.1| transcription elongation factor GreA [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261310679|gb|EEY11863.1| transcription elongation factor GreA [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 179
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ +IP+T +G +++++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q E
Sbjct: 21 LMKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCE 80
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E + A++ID++ M+ + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL
Sbjct: 81 GRIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEEVTYRIVGDDEANIKEGL 140
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIAR LIGKE+ D +S+ PGG+ ++I+ V +I
Sbjct: 141 ISVNSPIARGLIGKEVNDSVSITTPGGKVEFDIVGVEYI 179
>gi|300718587|ref|YP_003743390.1| transcription elongation factor [Erwinia billingiae Eb661]
gi|299064423|emb|CAX61543.1| Transcription elongation factor [Erwinia billingiae Eb661]
Length = 158
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G DK+++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGADKLREELEELKTIKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M+ + R+ FG+TV ++ ++ ++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMNANGRVIFGSTVKVLNLDTDEESTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR LIGKE+ D+ V PGG+ YEIL++ ++
Sbjct: 121 SVNSPMARGLIGKEVDDVTIVKTPGGDVEYEILKIEYL 158
>gi|304311954|ref|YP_003811552.1| Transcription elongation factor [gamma proteobacterium HdN1]
gi|301797687|emb|CBL45909.1| Transcription elongation factor [gamma proteobacterium HdN1]
Length = 159
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M+ ++P+T +G ++++EL ++ ERPR++ AI+EARA+GDL ENAEY AAKE Q E
Sbjct: 1 MIKRVPMTVEGEVRLREELDNLKKVERPRVVAAIAEARAHGDLKENAEYHAAKEQQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+AE+E+ ++ A+VIDI+ ++ ++ FG T+ L + + +++ ++IVG+ EAD + G
Sbjct: 61 GRIAEIESKLSEAQVIDITRIAPTGKVIFGVTLKLYDVDKDEERAFKIVGEDEADFKEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S+ SPIAR LIGK +GD +SV+ PGG TYEIL+V
Sbjct: 121 ISVGSPIARGLIGKFVGDEVSVDTPGGGVTYEILEV 156
>gi|85708556|ref|ZP_01039622.1| transcription elongation factor [Erythrobacter sp. NAP1]
gi|85690090|gb|EAQ30093.1| transcription elongation factor [Erythrobacter sp. NAP1]
Length = 158
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 116/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+ ++G++++ +L+ +EERPRI+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 MEKVPMLAEGYERLTTDLKA-LREERPRIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ +LE I+RA++ID T+SGDRI FGATV+L++++ K YQIVG+ EAD G +S
Sbjct: 63 QIGDLEGKISRAQIIDPKTLSGDRIIFGATVTLLDEDDKPIK-YQIVGETEADAAKGRIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSP+ARA+IGK++ + I V P G+K Y + ++ +I
Sbjct: 122 YSSPLARAMIGKQVEEEIEVTVPSGDKFYLVEKIEFI 158
>gi|238783524|ref|ZP_04627546.1| Transcription elongation factor greA [Yersinia bercovieri ATCC
43970]
gi|238797561|ref|ZP_04641058.1| Transcription elongation factor greA [Yersinia mollaretii ATCC
43969]
gi|238715579|gb|EEQ07569.1| Transcription elongation factor greA [Yersinia bercovieri ATCC
43970]
gi|238718558|gb|EEQ10377.1| Transcription elongation factor greA [Yersinia mollaretii ATCC
43969]
Length = 158
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G DK+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGADKLREELDFLKGVRRPKIISDIATAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VIDI+ M + R+ FGATV ++ + +++ Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVDIEEEQQYRIVGDDEADFKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D++ + PGGE YEIL V ++
Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILSVDYV 158
>gi|238899018|ref|YP_002924700.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|259647646|sp|C4K7K9|GREA_HAMD5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|229466778|gb|ACQ68552.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 158
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G +K+++EL+ + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTLRGAEKLREELQHLKSVLRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E+ ++ A++ID++ ++ I FGATV+++ +S +KK YQIVGD EA+ + L+S+
Sbjct: 63 QEIESKLSHAQIIDVTKIANKGIVIFGATVTVLNTHSEEKKIYQIVGDDEANFKKDLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LI K++ D+ ++ PGGE YEIL V +
Sbjct: 123 NSPIARGLIAKKISDVAVIHTPGGEVEYEILDVKYC 158
>gi|296108269|ref|YP_003619970.1| transcription elongation factor GreA [Legionella pneumophila
2300/99 Alcoy]
gi|295650171|gb|ADG26018.1| transcription elongation factor GreA [Legionella pneumophila
2300/99 Alcoy]
Length = 155
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 111/153 (72%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G + +++EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEGR+ EL
Sbjct: 1 MTVEGAEALKEELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEGRIQEL 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ +S SSP
Sbjct: 61 EAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKISYSSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARALIGKEL D ++V PGG YEI+QV +I
Sbjct: 121 IARALIGKELDDAVTVETPGGMVEYEIIQVQYI 153
>gi|207723992|ref|YP_002254390.1| transcription elongation factor grea (transcript cleavage
factorgrea) protein [Ralstonia solanacearum MolK2]
gi|207742902|ref|YP_002259294.1| transcription elongation factor grea (transcript cleavage
factorgrea) protein [Ralstonia solanacearum IPO1609]
gi|206589200|emb|CAQ36162.1| transcription elongation factor grea (transcript cleavage
factorgrea) protein [Ralstonia solanacearum MolK2]
gi|206594297|emb|CAQ61224.1| transcription elongation factor grea (transcript cleavage
factorgrea) protein [Ralstonia solanacearum IPO1609]
Length = 146
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/145 (53%), Positives = 107/145 (73%), Gaps = 1/145 (0%)
Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
+++EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+ E+E+ + A+
Sbjct: 2 LKEELQRLKTKERPAVVTAIAEARAQGDLSENADYDAAKERQGFIEGRILEIESKLAAAQ 61
Query: 75 VIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
VID +++ D RI FGAT+ L + +SG YQIVGD EAD+ +G +SISSPIARALIGK
Sbjct: 62 VIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDTGKISISSPIARALIGK 121
Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158
GD+ +V APGGE+ YE+ V ++
Sbjct: 122 YEGDVATVVAPGGEREYEVRSVKYL 146
>gi|322419242|ref|YP_004198465.1| transcription elongation factor GreA [Geobacter sp. M18]
gi|320125629|gb|ADW13189.1| transcription elongation factor GreA [Geobacter sp. M18]
Length = 158
Score = 151 bits (382), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 114/157 (72%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +P+T + ++ +Q++L+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E
Sbjct: 1 MSQTVPLTKESYEALQEDLKRLIKEERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL++ + RA V+D+S + D++ FGATV++ + ++ ++ Y+IVG+ EAD++ G +
Sbjct: 61 GRILELQDKLARAYVVDLSNLKPDKVVFGATVTVYDTSTEEEITYKIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+ +ALIG +L D + V+ P G K YEI+++ +
Sbjct: 121 SCTSPVGKALIGHKLDDSVRVSVPSGMKEYEIIEIRY 157
>gi|294011426|ref|YP_003544886.1| transcription elongation factor GreA [Sphingobium japonicum UT26S]
gi|292674756|dbj|BAI96274.1| transcription elongation factor GreA [Sphingobium japonicum UT26S]
Length = 158
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 116/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+K+P+ G+DK+ ++LR + ERP I+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 VEKMPMLQMGYDKLNEQLR-ELKAERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+A+LE+ ++RA++ID T+SGD++ FGATV+L++++ K YQIVG EAD + G++S
Sbjct: 63 TIADLEDKLSRAQIIDPRTLSGDKVVFGATVTLLDEDDKPVK-YQIVGQAEADAKVGMIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ RALIG+++G+ + V+ P G+K Y + ++ +I
Sbjct: 122 YNSPLGRALIGRQIGEEVEVSVPSGDKFYLVDKIDFI 158
>gi|238757567|ref|ZP_04618752.1| Transcription elongation factor greA [Yersinia aldovae ATCC 35236]
gi|238704329|gb|EEP96861.1| Transcription elongation factor greA [Yersinia aldovae ATCC 35236]
Length = 158
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVNGAEKLREELDFLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VIDI+ M + R+ FG TV ++ +S ++++Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGCTVRVLNVDSEEEQHYRIVGDDEADFKKNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D++ + PGGE YEIL V ++
Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILNVDYV 158
>gi|255068112|ref|ZP_05319967.1| transcription elongation factor GreA [Neisseria sicca ATCC 29256]
gi|261364737|ref|ZP_05977620.1| transcription elongation factor GreA [Neisseria mucosa ATCC 25996]
gi|255047627|gb|EET43091.1| transcription elongation factor GreA [Neisseria sicca ATCC 29256]
gi|288567037|gb|EFC88597.1| transcription elongation factor GreA [Neisseria mucosa ATCC 25996]
Length = 158
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQRLKSVARPEIIEAIAEARSHGDLSENAEYEAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 61 RISELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKEGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD+ V APGG + Y+I+ V +I
Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIISVQYI 158
>gi|222056354|ref|YP_002538716.1| transcription elongation factor GreA [Geobacter sp. FRC-32]
gi|221565643|gb|ACM21615.1| transcription elongation factor GreA [Geobacter sp. FRC-32]
Length = 158
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 112/157 (71%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +P+T + ++ +Q+EL+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E
Sbjct: 1 MSQSVPLTKESYEFLQEELKRLIKEERPKVIQDIAEARSHGDLSENAEYDAAKHRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL++ + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ G +
Sbjct: 61 GRILELQDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEEVTYKIVGEDEADIKIGKM 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+ +ALIG +L D + V+ P G K YEI+ + +
Sbjct: 121 SCTSPVGKALIGHKLDDTVKVSVPSGMKEYEIIDIKY 157
>gi|261342624|ref|ZP_05970482.1| transcription elongation factor GreA [Enterobacter cancerogenus
ATCC 35316]
gi|288315272|gb|EFC54210.1| transcription elongation factor GreA [Enterobacter cancerogenus
ATCC 35316]
Length = 158
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VIDI+ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDITKMPNNGRVIFGATVTVLNLDNDEEQKYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++ + PGGE YEI++V ++
Sbjct: 124 SPIARGLIGKEQDDVVVIRTPGGEVEYEIIKVEYL 158
>gi|113461143|ref|YP_719211.1| transcription elongation factor GreA [Haemophilus somnus 129PT]
gi|170717727|ref|YP_001784798.1| transcription elongation factor GreA [Haemophilus somnus 2336]
gi|112823186|gb|ABI25275.1| transcription elongation factor GreA [Haemophilus somnus 129PT]
gi|168825856|gb|ACA31227.1| transcription elongation factor GreA [Haemophilus somnus 2336]
Length = 158
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G +++++EL + + RP IIKAISEAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIIKAISEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + ++ID++ + + ++ FGATV L+ ++ ++ Y+IVGD EAD++SGL+S+
Sbjct: 63 QEIEGKLANCQIIDVTKLPNNGKVIFGATVVLLNIDTDEEVTYRIVGDDEADIKSGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SPIAR LIGK++ D + + PGG+ +EI++V +
Sbjct: 123 NSPIARGLIGKDVDDTVVITTPGGKVEFEIVEVEY 157
>gi|240949666|ref|ZP_04754001.1| transcription elongation factor GreA [Actinobacillus minor NM305]
gi|240295924|gb|EER46600.1| transcription elongation factor GreA [Actinobacillus minor NM305]
Length = 158
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAELLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + A++ID++ M + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+S+
Sbjct: 63 QEIEGKLANAQIIDVTKMQNNGKVIFGATVSLVNVDTDEEVTYRIVGDDEANIKEGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I
Sbjct: 123 NSPIARGLVGKEVDDSVSITTPGGKVEFDIVDVEYI 158
>gi|317493617|ref|ZP_07952038.1| transcription elongation factor GreA [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918560|gb|EFV39898.1| transcription elongation factor GreA [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 158
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +K+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGAEKLREELEYLKGTRRPQIIADIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A VID++ + R+ FG TVS+ ++ DK+ Y IVGD EAD + +
Sbjct: 61 RIQEIEAKLSNANVIDVTKIPNTGRVIFGCTVSVENLDTEDKQTYSIVGDDEADFKQNRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE GDI+ + PGGE +EIL+V +I
Sbjct: 121 SVNSPIARGLIGKEQGDIVVIKTPGGEVEFEILKVEYI 158
>gi|292486826|ref|YP_003529696.1| transcription elongation factor greA [Erwinia amylovora CFBP1430]
gi|292900775|ref|YP_003540144.1| transcription elongation factor [Erwinia amylovora ATCC 49946]
gi|291200623|emb|CBJ47755.1| transcription elongation factor [Erwinia amylovora ATCC 49946]
gi|291552243|emb|CBA19280.1| Transcription elongation factor greA [Erwinia amylovora CFBP1430]
gi|312170894|emb|CBX79153.1| Transcription elongation factor greA [Erwinia amylovora ATCC
BAA-2158]
Length = 160
Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 115/160 (71%), Gaps = 3/160 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G DK+++EL + +RPRII +I+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGADKLREELEELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
R+ E+E ++ A+VID++ M+G+ R+ FGATV+++ + ++ Y+IVGD EAD +
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMAGNANGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQN 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
L+S++SP+AR L+GK D+ + PGG+ YEI++V ++
Sbjct: 121 LISVNSPMARGLVGKLADDVTVIKTPGGDVEYEIIKVEYL 160
>gi|271499165|ref|YP_003332190.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
gi|270342720|gb|ACZ75485.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
Length = 158
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QFPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VID++ M+ + R+ FGA V+++ ++ +++ Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDVTKMAANGRVIFGAMVTVMNLDTEEEQTYRIVGDDEADFKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE D+++++ PGG YEIL+V ++
Sbjct: 123 NSPIARGLIGKEEDDVVTISTPGGVVEYEILKVEYL 158
>gi|260869932|ref|YP_003236334.1| transcription elongation factor GreA [Escherichia coli O111:H- str.
11128]
gi|257766288|dbj|BAI37783.1| transcription elongation factor GreA [Escherichia coli O111:H- str.
11128]
gi|323178643|gb|EFZ64219.1| transcription elongation factor GreA domain protein [Escherichia
coli 1180]
Length = 158
Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VID++ M + R+ FGATV+++ +S ++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDKEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++ + PGGE +E+++V ++
Sbjct: 124 SPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158
>gi|224372408|ref|YP_002606780.1| transcription elongation factor GreA [Nautilia profundicola AmH]
gi|254799565|sp|B9L822|GREA_NAUPA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|223589756|gb|ACM93492.1| transcription elongation factor grea transcript cleavage factorgrea
[Nautilia profundicola AmH]
Length = 162
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 107/156 (68%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T G++K+ +EL + + RP + K I AR GDL ENAEY AAKE Q+ E
Sbjct: 1 MHKEPMTKYGYEKLSKELEYLKTTARPEVAKEIDSARELGDLKENAEYHAAKEKQSHIER 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL +I++RA V+D + +R+AFG+TV L++ ++ +K+ Y IVG EA+ GL+S
Sbjct: 61 RIAELSDILSRAVVVDPKEHAHNRVAFGSTVYLIDVDTDEKEKYTIVGAPEANPDKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A+ALIGKE+GD + VN PGG K YEI ++ +
Sbjct: 121 YHSPLAKALIGKEVGDEVEVNLPGGVKVYEIDKICY 156
>gi|254361960|ref|ZP_04978091.1| transcription elongation factor GreA [Mannheimia haemolytica
PHL213]
gi|153093507|gb|EDN74487.1| transcription elongation factor GreA [Mannheimia haemolytica
PHL213]
Length = 158
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G +++++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + A++ID++ M+ + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL+S+
Sbjct: 63 QEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEEVTYRIVGDDEANIKEGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D +S+ PGG+ ++I+ V +I
Sbjct: 123 NSPIARGLIGKEVDDSVSITTPGGKVEFDIVGVEYI 158
>gi|238793013|ref|ZP_04636642.1| Transcription elongation factor greA [Yersinia intermedia ATCC
29909]
gi|238727613|gb|EEQ19138.1| Transcription elongation factor greA [Yersinia intermedia ATCC
29909]
Length = 158
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVNGAEKLREELDFLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VIDI+ M + R+ FGATV ++ +S +++ Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDITRMPNNGRVIFGATVRVLNVDSEEEQQYRIVGDDEADFKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D++ + PGGE YEIL V ++
Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILSVDYV 158
>gi|152980351|ref|YP_001353931.1| GreA transcription elongation factor [Janthinobacterium sp.
Marseille]
gi|151280428|gb|ABR88838.1| GreA transcription elongation factor [Janthinobacterium sp.
Marseille]
Length = 157
Score = 150 bits (380), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 110/154 (71%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G + +++EL + +ERP +I AI+EARA GDLSENA+Y AAKE Q+ EGR+A+
Sbjct: 4 PITPYGANVLKEELHRLKTKERPWVINAIAEARAQGDLSENADYDAAKEKQSFIEGRIAD 63
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E + ++VID +T+ + R+ F ATV L + SG+K YQIVG EAD++ VSI+S
Sbjct: 64 IEGKLGTSQVIDPTTLEAEGRVVFAATVDLEDLESGEKVTYQIVGIDEADLKEKKVSITS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
PIARA+IGK GD++ V AP G + YEILQV +I
Sbjct: 124 PIARAMIGKYAGDVVGVEAPAGLREYEILQVRYI 157
>gi|293393162|ref|ZP_06637477.1| transcription elongation factor GreA [Serratia odorifera DSM 4582]
gi|291424308|gb|EFE97522.1| transcription elongation factor GreA [Serratia odorifera DSM 4582]
Length = 158
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T G +K+++EL + + RP+II I+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTLFGAEKLREELEYLKSVRRPKIIADIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VIDI+ M R+ FG+TV+++ +S D+ Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDITKMPNTGRVIFGSTVTVMNLDSEDEVTYRIVGDDEADFKKNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+AR LIGKE D++ + PGG+ YEIL+V ++
Sbjct: 123 NSPMARGLIGKEQDDVVVIKTPGGDVDYEILKVEYL 158
>gi|157148750|ref|YP_001456069.1| transcription elongation factor GreA [Citrobacter koseri ATCC
BAA-895]
gi|157085955|gb|ABV15633.1| hypothetical protein CKO_04582 [Citrobacter koseri ATCC BAA-895]
Length = 158
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VID++ M + R+ FGATV+++ ++ +++ ++IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDNDEEQTWRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR L+GKE D++++ PGGE YE+++V ++
Sbjct: 124 SPIARGLVGKEQDDVVTIKTPGGEVEYEVIKVEYL 158
>gi|118580935|ref|YP_902185.1| transcription elongation factor GreA [Pelobacter propionicus DSM
2379]
gi|229485902|sp|A1AS07|GREA_PELPD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|118503645|gb|ABL00128.1| transcription elongation factor GreA [Pelobacter propionicus DSM
2379]
Length = 158
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 109/157 (69%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M IP+T + ++ +Q+EL+ + ERP++I+ I+EAR++GDLSENAEY AAK Q E
Sbjct: 1 MSHSIPLTKESYESLQEELKRLIRVERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL + + RA V+D+S M D++ FG+TV+L + S ++ Y+IVG+ EAD++ G +
Sbjct: 61 GRIQELNSKLARAYVVDLSNMKPDKVVFGSTVTLYDTASEEEITYKIVGEDEADIKLGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+ +ALIG +L D + V P G K YEI+ + +
Sbjct: 121 SCTSPVGKALIGHKLDDSVKVKVPAGTKEYEIIDIKY 157
>gi|284799703|ref|ZP_05984625.2| transcription elongation factor GreA [Neisseria subflava NJ9703]
gi|284797264|gb|EFC52611.1| transcription elongation factor GreA [Neisseria subflava NJ9703]
Length = 162
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 5 MQKIPLTVRGAELLKQELQHLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 64
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A +I+ + + + +I FG TV+L + + ++ YQIVG+ EAD++ +
Sbjct: 65 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKEHKI 124
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD+ V APGG + Y+I+ V +I
Sbjct: 125 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 162
>gi|307611501|emb|CBX01175.1| transcription elongation factor GreA [Legionella pneumophila 130b]
Length = 155
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 110/153 (71%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G + ++ EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEGR+ EL
Sbjct: 1 MTVEGAEALKAELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEGRIQEL 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ +S SSP
Sbjct: 61 EAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKISYSSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARALIGKEL D ++V PGG YEI+QV +I
Sbjct: 121 IARALIGKELDDAVTVETPGGMVEYEIIQVQYI 153
>gi|56460087|ref|YP_155368.1| transcription elongation factor GreA [Idiomarina loihiensis L2TR]
gi|56179097|gb|AAV81819.1| Transcription elongation factor GreA [Idiomarina loihiensis L2TR]
Length = 158
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T G ++ EL+ + ERPRI++AI++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTEHGAQLLRDELKRLKTVERPRIVEAIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A++ID++ + + ++ FG+TV++ + ++ Y+IVGD EAD++S L+
Sbjct: 61 RIQEIESKLSNAQIIDVTKVPNNGKVIFGSTVTVYNTKTDEEVTYKIVGDDEADIKSNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIARALIGKE+ DI +V P GE YE++ V +
Sbjct: 121 SVNSPIARALIGKEIDDIATVTTPNGEVEYEVVAVQY 157
>gi|118594565|ref|ZP_01551912.1| GreA/GreB family elongation factor [Methylophilales bacterium
HTCC2181]
gi|118440343|gb|EAV46970.1| GreA/GreB family elongation factor [Methylophilales bacterium
HTCC2181]
Length = 158
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+I +T G + +++EL+ + +RP II+AI+EARA GDLSENAEY++AKE Q EGR+
Sbjct: 3 QIHMTRNGLEALKKELQQLKSVDRPAIIEAIAEARAQGDLSENAEYESAKEKQGFIEGRL 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
A++E I++AEVID + + + R FGAT+ L + ++ K +QIVGD E+ ++ +SI
Sbjct: 63 ADIEAKISQAEVIDPANLKAEGRCVFGATIELEDLDTEKKSTFQIVGDDESSIKDNKISI 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+A+ALIGKE GD++ +PGG K+++IL+VL+I
Sbjct: 123 NSPLAKALIGKEAGDVVEFESPGGIKSFDILRVLYI 158
>gi|257465495|ref|ZP_05629866.1| transcription elongation factor GreA [Actinobacillus minor 202]
gi|257451155|gb|EEV25198.1| transcription elongation factor GreA [Actinobacillus minor 202]
Length = 158
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAELLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + A++ID++ M + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+S+
Sbjct: 63 QEIEGKLANAQIIDVTKMQNNGKVIFGATVSLVNVDTDEEVTYRIVGDDEANIKEGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GKE+ D +S+ PGG+ ++I+ V ++
Sbjct: 123 NSPIARGLVGKEVDDSVSITTPGGKVEFDIVDVEYL 158
>gi|253686964|ref|YP_003016154.1| transcription elongation factor GreA [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251753542|gb|ACT11618.1| transcription elongation factor GreA [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 158
Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S+
Sbjct: 63 QDIEAKLSNAQVIDVTKMTANGRVIFGATVTVMNLDNEEEQTYRIVGDDEADFKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE D++ + PGG+ YEIL+V ++
Sbjct: 123 NSPIARGLIGKEEDDVVVIRTPGGDVEYEILKVEYL 158
>gi|319639242|ref|ZP_07993993.1| transcription elongation factor greA [Neisseria mucosa C102]
gi|317399426|gb|EFV80096.1| transcription elongation factor greA [Neisseria mucosa C102]
Length = 158
Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQHLKSVARPEIIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A +I+ + + + +I FG TV+L + + ++ YQIVG+ EAD++ +
Sbjct: 61 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKERKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD+ V APGG + Y+I+ V +I
Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 158
>gi|121635119|ref|YP_975364.1| transcription elongation factor [Neisseria meningitidis FAM18]
gi|218768434|ref|YP_002342946.1| transcription elongation factor GreA [Neisseria meningitidis Z2491]
gi|254805211|ref|YP_003083432.1| Transcription elongation factor [Neisseria meningitidis alpha14]
gi|261377466|ref|ZP_05982039.1| transcription elongation factor GreA [Neisseria cinerea ATCC 14685]
gi|296314208|ref|ZP_06864149.1| transcription elongation factor GreA [Neisseria polysaccharea ATCC
43768]
gi|25453011|sp|Q9JTT4|GREA_NEIMA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|120866825|emb|CAM10583.1| transcription elongation factor [Neisseria meningitidis FAM18]
gi|121052442|emb|CAM08778.1| transcription elongation factor [Neisseria meningitidis Z2491]
gi|254668753|emb|CBA06621.1| Transcription elongation factor [Neisseria meningitidis alpha14]
gi|254672956|emb|CBA07383.1| Transcription elongation factor [Neisseria meningitidis alpha275]
gi|261392308|emb|CAX49834.1| transcription elongation factor GreA (transcript cleavage factor
GreA) [Neisseria meningitidis 8013]
gi|269146195|gb|EEZ72613.1| transcription elongation factor GreA [Neisseria cinerea ATCC 14685]
gi|296839104|gb|EFH23042.1| transcription elongation factor GreA [Neisseria polysaccharea ATCC
43768]
gi|308389534|gb|ADO31854.1| transcription elongation factor [Neisseria meningitidis alpha710]
gi|319410678|emb|CBY91057.1| transcription elongation factor GreA (transcript cleavage factor
GreA) [Neisseria meningitidis WUE 2594]
gi|325128511|gb|EGC51389.1| transcription elongation factor greA [Neisseria meningitidis N1568]
gi|325134589|gb|EGC57233.1| transcription elongation factor greA [Neisseria meningitidis
M13399]
gi|325138430|gb|EGC60996.1| transcription elongation factor greA [Neisseria meningitidis
ES14902]
gi|325144750|gb|EGC67045.1| transcription elongation factor greA [Neisseria meningitidis
M01-240013]
gi|325198564|gb|ADY94020.1| transcription elongation factor greA [Neisseria meningitidis G2136]
gi|325201872|gb|ADY97326.1| transcription elongation factor greA [Neisseria meningitidis
M01-240149]
gi|325204417|gb|ADY99870.1| transcription elongation factor greA [Neisseria meningitidis
M01-240355]
gi|325205816|gb|ADZ01269.1| transcription elongation factor greA [Neisseria meningitidis
M04-240196]
gi|325208376|gb|ADZ03828.1| transcription elongation factor greA [Neisseria meningitidis
NZ-05/33]
Length = 158
Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 61 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158
>gi|261400869|ref|ZP_05986994.1| transcription elongation factor GreA [Neisseria lactamica ATCC
23970]
gi|313668543|ref|YP_004048827.1| transcription elongation factor [Neisseria lactamica ST-640]
gi|269209345|gb|EEZ75800.1| transcription elongation factor GreA [Neisseria lactamica ATCC
23970]
gi|309379687|emb|CBX21676.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006005|emb|CBN87464.1| transcription elongation factor [Neisseria lactamica 020-06]
Length = 158
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 61 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVQYI 158
>gi|32490982|ref|NP_871236.1| hypothetical protein WGLp233 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|31340129|sp|Q8D2W9|GREA_WIGBR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|25166188|dbj|BAC24379.1| greA [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 158
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ IP+T KG +K+++EL++ +Q +R IIK+ISEAR YGDL ENAEYQAAKE Q E
Sbjct: 1 MNYIPMTLKGAEKLREELKYLKQTKRSEIIKSISEARQYGDLKENAEYQAAKEQQYFCES 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ + +++IDI + DR+ FG+T+++ + ++K Y+IVGD EA+ ++ L+
Sbjct: 61 RIKEIESKLMHSKIIDIKKIPFRDRVVFGSTITIKNLKTLEEKTYKIVGDDEANFKNNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSP++R LIGK+ +I+++N P G Y+IL++ ++
Sbjct: 121 SISSPLSRGLIGKKTLEIVNINTPSGIIKYKILKINYL 158
>gi|85712942|ref|ZP_01043982.1| Transcription elongation factor GreA [Idiomarina baltica OS145]
gi|85693248|gb|EAQ31206.1| Transcription elongation factor GreA [Idiomarina baltica OS145]
Length = 158
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 68/146 (46%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G ++++QEL+ + E+RPRI++AI++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTERGAEQLRQELKRLKTEDRPRIVEAIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A++ID++ + + ++ FG+TV++ + ++ YQIVGD EAD++S L+
Sbjct: 61 RIQEIESKLSNAQIIDVTKVPNNGKVIFGSTVTVYNTKTDEEVTYQIVGDDEADIKSNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S++SPIARALIGKE+ DI +V P G
Sbjct: 121 SVNSPIARALIGKEIDDIATVTTPNG 146
>gi|15602580|ref|NP_245652.1| transcription elongation factor GreA [Pasteurella multocida subsp.
multocida str. Pm70]
gi|13431536|sp|P57801|GREA_PASMU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|12721009|gb|AAK02799.1| GreA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 158
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 115/155 (74%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G ++++QEL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTIRGAEQLKQELDFLKNTRRPEIINAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + +++ID++ + + ++ FGAT+ L+ ++ ++ +YQIVGD EA++++GL+S+
Sbjct: 63 QEIEGKLANSQIIDVTKIPNNGKVIFGATILLLNIDTEEEVSYQIVGDDEANIKAGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SPIAR LIGKE+ D++ + PGG+ +EIL+V +
Sbjct: 123 NSPIARGLIGKEVDDVVVIQTPGGKVEFEILEVEY 157
>gi|283788181|ref|YP_003368046.1| transcription elongation factor [Citrobacter rodentium ICC168]
gi|282951635|emb|CBG91335.1| transcription elongation factor [Citrobacter rodentium ICC168]
Length = 158
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPLTLRGAEKLREELDFLKTVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIN 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VID++ M + R+ FGATV+++ +S +++ ++IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDSDEEQTWRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++ + PGGE YEI +V ++
Sbjct: 124 SPIARGLIGKEQDDVVVIKTPGGEVEYEITKVEYL 158
>gi|270158808|ref|ZP_06187465.1| transcription elongation factor GreA domain protein [Legionella
longbeachae D-4968]
gi|289166397|ref|YP_003456535.1| transcription elongation factor GreA [Legionella longbeachae
NSW150]
gi|269990833|gb|EEZ97087.1| transcription elongation factor GreA domain protein [Legionella
longbeachae D-4968]
gi|288859570|emb|CBJ13538.1| transcription elongation factor GreA [Legionella longbeachae
NSW150]
Length = 158
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T G + +++EL + +RPRI+ AI+ ARA+GDL ENAEY AA+E Q+ NEG
Sbjct: 1 MSKYPMTVHGAEALKEELHRLKFVDRPRIVDAIATARAHGDLKENAEYHAAREQQSFNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE ++ A++IDIS + + ++ FG TV++ + + YQIVG+ EAD++ +
Sbjct: 61 RIQELEAKLSHAQIIDISKLPNNGKVVFGCTVTICNVANETQLTYQIVGEDEADIKQNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SSPI R LIGKEL D ++VN PGG YEI+ V +I
Sbjct: 121 SYSSPIGRGLIGKELDDSVTVNTPGGLVEYEIIDVQYI 158
>gi|161870299|ref|YP_001599469.1| transcription elongation factor GreA [Neisseria meningitidis
053442]
gi|161595852|gb|ABX73512.1| transcription elongation factor [Neisseria meningitidis 053442]
Length = 173
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 16 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 75
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 76 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 135
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 136 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 173
>gi|261820118|ref|YP_003258224.1| transcription elongation factor GreA [Pectobacterium wasabiae
WPP163]
gi|261604131|gb|ACX86617.1| transcription elongation factor GreA [Pectobacterium wasabiae
WPP163]
Length = 159
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 113/157 (71%), Gaps = 2/157 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD--RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S
Sbjct: 63 QDIEAKLSNAQVIDVTKMAANNGRVIFGATVTVMNLDNDEEQTYRIVGDDEADFKQNLIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++SPIAR LIGKE D++ + PGG+ YE+L+V ++
Sbjct: 123 VNSPIARGLIGKEQDDVVVIRTPGGDVEYEVLKVEYL 159
>gi|42523662|ref|NP_969042.1| transcription elongation factor GreA [Bdellovibrio bacteriovorus
HD100]
gi|39575869|emb|CAE80035.1| transcription elongation factor GreA [Bdellovibrio bacteriovorus
HD100]
Length = 162
Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 108/155 (69%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
DK+P+T +G + EL+ EERP +I AI EARA GD+SENAEY+AAKE Q + EGR
Sbjct: 7 DKLPMTIRGKALLDAELKKLLLEERPSVILAIEEARAQGDISENAEYEAAKERQAMIEGR 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+AE++ + A+VID + + DRI FGA V +V+ S + YQIVG EADV+ G++SI
Sbjct: 67 IAEIQGKLAGADVIDTAQIKADRIVFGAFVKIVDTESEETFQYQIVGVDEADVKKGMISI 126
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARALIGK+ D ++V +P G+K +EI+ +
Sbjct: 127 LSPLARALIGKKDSDTVTVQSPKGDKEFEIISFEY 161
>gi|89900792|ref|YP_523263.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118]
gi|89345529|gb|ABD69732.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118]
Length = 180
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 78/158 (49%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V +P+T +G +K++ EL + +RP +I AI+EARA GDLSENAEY+ AK+ Q EG
Sbjct: 23 VATLPITKRGAEKLKAELHKLKTVDRPWVINAIAEARAQGDLSENAEYEVAKDKQGFIEG 82
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ +VID + + R+ FGATV L ++ SG YQIVG+ EAD++ GL+
Sbjct: 83 RIQEIEGKLSVCQVIDPVELHAEGRVVFGATVQLEDEASGAAVTYQIVGEDEADIKLGLI 142
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+I SPIARALIGKE GD V APGG K YE++ V ++
Sbjct: 143 NIGSPIARALIGKEQGDTAEVQAPGGIKHYEVVAVSYV 180
>gi|59801297|ref|YP_208009.1| hypothetical protein NGO0899 [Neisseria gonorrhoeae FA 1090]
gi|239998864|ref|ZP_04718788.1| transcription elongation factor GreA [Neisseria gonorrhoeae 35/02]
gi|240016658|ref|ZP_04723198.1| transcription elongation factor GreA [Neisseria gonorrhoeae FA6140]
gi|240112789|ref|ZP_04727279.1| transcription elongation factor GreA [Neisseria gonorrhoeae MS11]
gi|240123392|ref|ZP_04736348.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID332]
gi|240128094|ref|ZP_04740755.1| transcription elongation factor GreA [Neisseria gonorrhoeae
SK-93-1035]
gi|254493651|ref|ZP_05106822.1| transcription elongation factor [Neisseria gonorrhoeae 1291]
gi|260440648|ref|ZP_05794464.1| transcription elongation factor GreA [Neisseria gonorrhoeae DGI2]
gi|268594706|ref|ZP_06128873.1| transcription elongation factor [Neisseria gonorrhoeae 35/02]
gi|268598857|ref|ZP_06133024.1| transcription elongation factor [Neisseria gonorrhoeae MS11]
gi|268682016|ref|ZP_06148878.1| transcription elongation factor [Neisseria gonorrhoeae PID332]
gi|268686483|ref|ZP_06153345.1| transcription elongation factor [Neisseria gonorrhoeae SK-93-1035]
gi|59718192|gb|AAW89597.1| putative transcription elongation factor [Neisseria gonorrhoeae FA
1090]
gi|226512691|gb|EEH62036.1| transcription elongation factor [Neisseria gonorrhoeae 1291]
gi|268548095|gb|EEZ43513.1| transcription elongation factor [Neisseria gonorrhoeae 35/02]
gi|268582988|gb|EEZ47664.1| transcription elongation factor [Neisseria gonorrhoeae MS11]
gi|268622300|gb|EEZ54700.1| transcription elongation factor [Neisseria gonorrhoeae PID332]
gi|268626767|gb|EEZ59167.1| transcription elongation factor [Neisseria gonorrhoeae SK-93-1035]
Length = 158
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 61 RISELEHKLSVAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158
>gi|304387186|ref|ZP_07369429.1| transcription elongation factor GreA [Neisseria meningitidis ATCC
13091]
gi|304338753|gb|EFM04864.1| transcription elongation factor GreA [Neisseria meningitidis ATCC
13091]
gi|325132389|gb|EGC55082.1| transcription elongation factor greA [Neisseria meningitidis M6190]
gi|325136526|gb|EGC59130.1| transcription elongation factor greA [Neisseria meningitidis M0579]
Length = 173
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 16 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 75
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 76 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 135
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 136 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 173
>gi|241759232|ref|ZP_04757338.1| transcription elongation factor GreA [Neisseria flavescens SK114]
gi|241320368|gb|EER56665.1| transcription elongation factor GreA [Neisseria flavescens SK114]
Length = 158
Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQHLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A +I+ + + + +I FG TV+L + + ++ YQIVG+ EAD++ +
Sbjct: 61 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKERKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD+ V APGG + Y+I+ V +I
Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 158
>gi|227113764|ref|ZP_03827420.1| transcription elongation factor GreA [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 158
Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A+VID++ M+ + R+ FG+TV+++ ++ +++ Y+IVGD EAD + L+S+
Sbjct: 63 QDIEAKLSNAQVIDVTKMTANGRVIFGSTVTVMNLDNDEEQTYRIVGDDEADFKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE D++ + PGG+ YEIL+V ++
Sbjct: 123 NSPIARGLIGKEQDDVVVIRTPGGDVEYEILKVEYL 158
>gi|329893940|ref|ZP_08269975.1| Transcription elongation factor GreA [gamma proteobacterium
IMCC3088]
gi|328923395|gb|EGG30712.1| Transcription elongation factor GreA [gamma proteobacterium
IMCC3088]
Length = 159
Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 109/155 (70%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G ++ EL ++ ERPRII AI+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MNKVPMTKAGEMALRAELERLRKVERPRIIAAIAEAREHGDLKENAEYHAAREQQSFAEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ + ++ FG T+ L+ + + Y+IVGD EADV+ L+
Sbjct: 61 RIMEIEGKLSYAQVIDITAIPHTGKVIFGTTIDLINLANDQEVTYRIVGDDEADVKRNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S+SSPIARALIGKE GD++ V AP G+ YEI QV
Sbjct: 121 SVSSPIARALIGKEEGDVVVVKAPSGDIEYEIDQV 155
>gi|332160070|ref|YP_004296647.1| transcription elongation factor GreA [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|325664300|gb|ADZ40944.1| transcription elongation factor GreA [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862039|emb|CBX72205.1| transcription elongation factor greA [Yersinia enterocolitica
W22703]
Length = 158
Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVNGAEKLREELDYLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VIDI+ M + R+ FGATV ++ S +++ Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVVSEEEQQYRIVGDDEADFKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D++ + PGGE YEIL V ++
Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILNVDYV 158
>gi|317046732|ref|YP_004114380.1| GreA/GreB family elongation factor [Pantoea sp. At-9b]
gi|316948349|gb|ADU67824.1| GreA/GreB family elongation factor [Pantoea sp. At-9b]
Length = 158
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T KG +K+++EL + +RPRII +I+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLKGAEKLREELNELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M R+ FGATV ++ ++ ++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVQVLNLDTDEESTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR L+GKE D+ + PGG+ YEIL+V ++
Sbjct: 121 SVNSPMARGLVGKEADDVAIIKTPGGDVEYEILKVEYL 158
>gi|300113257|ref|YP_003759832.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113]
gi|299539194|gb|ADJ27511.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113]
Length = 158
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T KG ++++ELR + RP+++ AI+EARA+GDL ENAEY AA+E Q EG
Sbjct: 1 MNKVPLTEKGAQQLREELRELKTVVRPKVVAAIAEARAHGDLKENAEYHAAREEQGFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +LE+ + A++ID+S + D R+ FG TV L+ + +K +YQIVGD EA+++ +
Sbjct: 61 RIRDLEHQLAHAQIIDVSKLQKDGRVVFGVTVDLINIETDEKASYQIVGDLEANIKENKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIARALIGK GD I V AP G YEI + +
Sbjct: 121 SINSPIARALIGKREGDEIQVQAPSGVILYEIAAIGY 157
>gi|157368727|ref|YP_001476716.1| transcription elongation factor GreA [Serratia proteamaculans 568]
gi|157320491|gb|ABV39588.1| transcription elongation factor GreA [Serratia proteamaculans 568]
Length = 158
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T G +K+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTLFGAEKLREELEYLKGVRRPKIIADIADAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VIDI+ M + R+ FG+TVS++ +S ++ Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGSTVSVMNLDSEEEVTYRIVGDDEADFKKNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+AR LIGKE+ D++ + PGG+ YEIL+V ++
Sbjct: 123 NSPMARGLIGKEVDDVVVIKTPGGDVDYEILKVDYL 158
>gi|325982668|ref|YP_004295070.1| transcription elongation factor GreA [Nitrosomonas sp. AL212]
gi|325532187|gb|ADZ26908.1| transcription elongation factor GreA [Nitrosomonas sp. AL212]
Length = 158
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 79/155 (50%), Positives = 109/155 (70%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T G + +++EL + RP +I AI+EARA+GDLSENAEY AAKE Q EGR+A
Sbjct: 4 IPLTVAGAEALRKELHDMKTIHRPAVIAAIAEARAHGDLSENAEYDAAKEKQGFIEGRIA 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE+ ++ A++I+ + ++ D FGATV L + + + YQIVGD EA+++ G +SIS
Sbjct: 64 ELESKLSSAQIINPALINADGACVFGATVELEDLQNSEVVTYQIVGDDEANIKDGKISIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPI+RALIGK GDI V+AP G + YEIL V +I
Sbjct: 124 SPISRALIGKYAGDIAEVHAPSGIREYEILDVKYI 158
>gi|225075463|ref|ZP_03718662.1| hypothetical protein NEIFLAOT_00468 [Neisseria flavescens
NRL30031/H210]
gi|224953281|gb|EEG34490.1| hypothetical protein NEIFLAOT_00468 [Neisseria flavescens
NRL30031/H210]
Length = 162
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 5 MQKIPLTVRGAELLKQELQHLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 64
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A +I+ + + + +I FG TV+L + + ++ YQIVG+ EAD++ +
Sbjct: 65 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKERKI 124
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD+ V APGG + Y+I+ V +I
Sbjct: 125 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 162
>gi|300918939|ref|ZP_07135497.1| transcription elongation factor GreA [Escherichia coli MS 115-1]
gi|300413935|gb|EFJ97245.1| transcription elongation factor GreA [Escherichia coli MS 115-1]
Length = 158
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VID++ M + R+ FGATV+ + +S +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTGLNLDSDEEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++ + PGGE +E+++V ++
Sbjct: 124 SPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158
>gi|188532495|ref|YP_001906292.1| Transcription elongation factor GreA [Erwinia tasmaniensis Et1/99]
gi|188027537|emb|CAO95384.1| Transcription elongation factor GreA [Erwinia tasmaniensis Et1/99]
Length = 160
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/160 (43%), Positives = 115/160 (71%), Gaps = 3/160 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G DK+++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGADKLREELEELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
R+ E+E ++ A+VID++ M+G+ R+ FGATV+++ + ++ Y+IVGD EAD +
Sbjct: 61 RIQEIEAKLSNAQVIDVTQMAGNANGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQN 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
L+S++SP+AR L+GK D+ + PGG+ YEI++V ++
Sbjct: 121 LISVNSPMARGLVGKVADDVTVIKTPGGDVEYEIVKVEYL 160
>gi|123440804|ref|YP_001004795.1| transcription elongation factor GreA [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122087765|emb|CAL10551.1| transcription elongation factor [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318607370|emb|CBY28868.1| transcription elongation factor GreA [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 158
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVNGAEKLREELDYLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VIDI+ M + R+ FGATV ++ S +++ Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVVSEEEQQYRIVGDDEADFKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D++ + PGGE YEIL V ++
Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILTVDYV 158
>gi|292493676|ref|YP_003529115.1| transcription elongation factor GreA [Nitrosococcus halophilus Nc4]
gi|291582271|gb|ADE16728.1| transcription elongation factor GreA [Nitrosococcus halophilus Nc4]
Length = 158
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 108/155 (69%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T KG ++++EL+ + RPR++ AI+EARA+GDL ENAEY AA+E Q EGR+
Sbjct: 3 KVPLTEKGAQQLREELQELKTVVRPRVVAAIAEARAHGDLKENAEYHAAREEQGFVEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+LE+ + A++ID++ + D R+ FG TV LV ++ + +YQIVGD EAD++ +S+
Sbjct: 63 RDLEHQLAHAQIIDVNKLQKDGRVVFGVTVDLVNMDTDGEVSYQIVGDLEADIKENKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SPIARALIGK GD + V AP G YEI V +
Sbjct: 123 NSPIARALIGKREGDEVQVQAPSGVVIYEIAAVCY 157
>gi|94676760|ref|YP_589063.1| transcription elongation factor GreA [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
gi|123384107|sp|Q1LSK1|GREA_BAUCH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|94219910|gb|ABF14069.1| transcription elongation factor GreA [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
Length = 158
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +++++EL + + RP II+ I+EAR YGDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGAEQLREELNYLKNVRRPEIIRNIAEAREYGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A++ID++ + ++ FG TVS+ N +++ Y+IVGD EA+ + L+
Sbjct: 61 RIQEIESKLSHAQIIDVTKLFPSGKVVFGVTVSVQNLNINEEQTYRIVGDDEANFKHNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIAR LIGK+ GDI+ + P GE Y+IL++ ++
Sbjct: 121 SISSPIARGLIGKKKGDIVLIKTPRGEVKYQILKIEYL 158
>gi|301025974|ref|ZP_07189457.1| transcription elongation factor GreA [Escherichia coli MS 196-1]
gi|299879900|gb|EFI88111.1| transcription elongation factor GreA [Escherichia coli MS 196-1]
Length = 158
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VID++ M + R+ F ATV+++ +S +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFCATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++ + PGGE +E+++V ++
Sbjct: 124 SPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158
>gi|50119643|ref|YP_048810.1| transcription elongation factor GreA [Pectobacterium atrosepticum
SCRI1043]
gi|49610169|emb|CAG73609.1| transcription elongation factor [Pectobacterium atrosepticum
SCRI1043]
Length = 159
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 112/155 (72%), Gaps = 2/155 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ +
Sbjct: 5 PMTLRGAEKLREELDHLKSVRRPEIITAIAEAREHGDLKENAEYHAAREQQGFCEGRIQD 64
Query: 66 LENIITRAEVIDISTMSGD--RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+E ++ A++ID++ M+ + R+ FGATV+++ +S +++ Y+IVGD EAD + L+S++
Sbjct: 65 IEAKLSNAQIIDVTKMAANNGRVIFGATVAVMNLDSEEEQTYRIVGDDEADFKQNLISVN 124
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++ + PGG+ YE+L+V ++
Sbjct: 125 SPIARGLIGKEQDDVVVIRTPGGDVEYEVLKVEYL 159
>gi|291616001|ref|YP_003518743.1| GreA [Pantoea ananatis LMG 20103]
gi|291151031|gb|ADD75615.1| GreA [Pantoea ananatis LMG 20103]
gi|327396252|dbj|BAK13674.1| transcription elongation factor GreA [Pantoea ananatis AJ13355]
Length = 158
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +++++EL + +RPRII +I+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGAERLREELHELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M R+ FGATV+++ ++ ++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVTVLNVDTDEEFTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR L+GKE D+ + PGG+ YEIL+V +I
Sbjct: 121 SVNSPMARGLVGKEADDVAIIKTPGGDVEYEILKVEYI 158
>gi|322514696|ref|ZP_08067723.1| transcription elongation factor GreA [Actinobacillus ureae ATCC
25976]
gi|322119345|gb|EFX91458.1| transcription elongation factor GreA [Actinobacillus ureae ATCC
25976]
Length = 158
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G + I++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAELIREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + A++ID++ M + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL+S+
Sbjct: 63 QEIEGKLGNAQIIDVTKMVNNGKVIFGATVGLVNADTDEEVTYRIVGDDEANIKEGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I
Sbjct: 123 NSPIARGLVGKEVDDSVSIVTPGGKVEFDIISVEYI 158
>gi|194098470|ref|YP_002001530.1| transcription elongation factor GreA [Neisseria gonorrhoeae
NCCP11945]
gi|291043955|ref|ZP_06569671.1| transcription elongation factor greA [Neisseria gonorrhoeae DGI2]
gi|293399156|ref|ZP_06643321.1| transcription elongation factor GreA [Neisseria gonorrhoeae F62]
gi|193933760|gb|ACF29584.1| GreA [Neisseria gonorrhoeae NCCP11945]
gi|291012418|gb|EFE04407.1| transcription elongation factor greA [Neisseria gonorrhoeae DGI2]
gi|291610570|gb|EFF39680.1| transcription elongation factor GreA [Neisseria gonorrhoeae F62]
gi|317164152|gb|ADV07693.1| transcription elongation factor GreA [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 174
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 17 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 76
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 77 RISELEHKLSVAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 136
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 137 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 174
>gi|148263922|ref|YP_001230628.1| transcription elongation factor GreA [Geobacter uraniireducens Rf4]
gi|146397422|gb|ABQ26055.1| transcription elongation factor GreA [Geobacter uraniireducens Rf4]
Length = 158
Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 111/157 (70%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +P+T + ++ +Q++L+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E
Sbjct: 1 MSQSVPLTKESYEFLQEDLKRLIKEERPKVIQDIAEARSHGDLSENAEYDAAKHRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL + + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ G +
Sbjct: 61 GRIQELSDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEEVTYKIVGEDEADIKIGKM 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+ +ALIG +L D + V+ P G K YEI+ + +
Sbjct: 121 SCTSPVGKALIGHKLDDTVKVSVPSGMKEYEIIDIKY 157
>gi|92115199|ref|YP_575127.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM
3043]
gi|91798289|gb|ABE60428.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM
3043]
Length = 158
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G K+++EL + EERPR+I AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNKVPMTVAGEQKLREELEQLKGEERPRVINAIAEAREHGDLKENAEYHAAREQQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ ++VID++ + ++ FG TV L+ ++ ++ Y+IVG+ EAD+++G +
Sbjct: 61 RIQEIESKLSASQVIDVTKLPKTGKVIFGVTVDLINLHNDEEVRYRIVGEDEADIKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S++SPIARALIGKE GD + V PGG+ YEI V
Sbjct: 121 SVTSPIARALIGKEEGDTVLVRTPGGDVEYEIAGV 155
>gi|237730101|ref|ZP_04560582.1| transcription elongation factor GreA [Citrobacter sp. 30_2]
gi|283836273|ref|ZP_06356014.1| transcription elongation factor GreA [Citrobacter youngae ATCC
29220]
gi|226908707|gb|EEH94625.1| transcription elongation factor GreA [Citrobacter sp. 30_2]
gi|291067636|gb|EFE05745.1| transcription elongation factor GreA [Citrobacter youngae ATCC
29220]
Length = 158
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VID++ M + R+ FGATV+++ ++ +++ ++IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDNDEEQTWRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++ + PGGE YE+ +V ++
Sbjct: 124 SPIARGLIGKEQDDVVVIKTPGGEVEYEVTKVEYL 158
>gi|115377193|ref|ZP_01464405.1| transcription elongation factor GreA [Stigmatella aurantiaca
DW4/3-1]
gi|310821199|ref|YP_003953557.1| transcription elongation factor GreA [Stigmatella aurantiaca
DW4/3-1]
gi|115365776|gb|EAU64799.1| transcription elongation factor GreA [Stigmatella aurantiaca
DW4/3-1]
gi|309394271|gb|ADO71730.1| Transcription elongation factor GreA [Stigmatella aurantiaca
DW4/3-1]
Length = 169
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 107/155 (69%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M IP+T G K+++EL+ Q ER +I + I ARA+GDL ENAEY AAKE Q E
Sbjct: 1 MSGNIPMTPSGLRKLKEELKQLQTVERGKISREIEVARAHGDLRENAEYHAAKEKQGHIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ +L + I RAEVID S + GD++ FGATV L++ + Y+IVG+ EAD++ +
Sbjct: 61 GRILDLNDWIARAEVIDTSKLKGDKVVFGATVVLLDSETDKTVTYRIVGELEADIKKRWL 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+++SP+ARALIGK +GD+ V +PGGE+ YE+ ++
Sbjct: 121 AVTSPVARALIGKGVGDVALVRSPGGEREYEVQEI 155
>gi|15677289|ref|NP_274442.1| transcription elongation factor [Neisseria meningitidis MC58]
gi|25453012|sp|Q9JYU3|GREA_NEIMB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|7226670|gb|AAF41791.1| transcription elongation factor GreA [Neisseria meningitidis MC58]
gi|325140625|gb|EGC63145.1| transcription elongation factor greA [Neisseria meningitidis CU385]
gi|325199954|gb|ADY95409.1| transcription elongation factor greA [Neisseria meningitidis
H44/76]
Length = 158
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 61 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVIYQIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158
>gi|319793964|ref|YP_004155604.1| transcription elongation factor grea [Variovorax paradoxus EPS]
gi|315596427|gb|ADU37493.1| transcription elongation factor GreA [Variovorax paradoxus EPS]
Length = 158
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/155 (53%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K++ EL + ERP +I AISEARA GDLSENAEY+ AK+ Q EGR+
Sbjct: 4 IPITKRGAEKLRAELHQLKTVERPWVINAISEARAQGDLSENAEYEVAKDRQGFIEGRIQ 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A++ID S + +G ++ FG+TV L E+ SG+ YQIVG+ EAD++ GL++IS
Sbjct: 64 EVEGKLSAAQIIDPSELDAGGKVVFGSTVELEEEESGEAVKYQIVGEDEADLKLGLINIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGKE GD V APGG K YEI+ V ++
Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGLKRYEIVAVRYL 158
>gi|71891884|ref|YP_277614.1| transcription elongation factor GreA [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|123747831|sp|Q493U4|GREA_BLOPB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71795990|gb|AAZ40741.1| transcription elongation factor [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 158
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G +K+++EL + + RP IIK ISEAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 RIPMTLRGAEKLREELDYLRNVLRPEIIKNISEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E+ + A +IDI+ ++ D++ FGATV + ++ ++ Y IVGD EA+++ ++SI
Sbjct: 63 QEIESKLFNAHIIDITKLTTDDKVVFGATVGVENLDTTYRQTYSIVGDDEANLKEHMISI 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIG + GDI+ +N P G+ Y+ILQV +
Sbjct: 123 NSPIARGLIGHKEGDIVRINTPKGKVRYKILQVKYC 158
>gi|259907033|ref|YP_002647389.1| Transcription elongation factor GreA [Erwinia pyrifoliae Ep1/96]
gi|224962655|emb|CAX54110.1| Transcription elongation factor GreA [Erwinia pyrifoliae Ep1/96]
gi|283476829|emb|CAY72667.1| Transcription elongation factor greA [Erwinia pyrifoliae DSM 12163]
gi|310766245|gb|ADP11195.1| Transcription elongation factor GreA [Erwinia sp. Ejp617]
Length = 160
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 115/160 (71%), Gaps = 3/160 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G DK+++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGADKLREELEELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
R+ E+E ++ A+VID++ M+G+ R+ FGATV+++ + ++ Y+IVGD EAD +
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMAGNANGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQN 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
L+S++SP+AR L+GK D+ + PGG+ Y+I++V ++
Sbjct: 121 LISVNSPMARGLVGKVADDVTVIKTPGGDVEYDIIKVEYL 160
>gi|240014222|ref|ZP_04721135.1| transcription elongation factor GreA [Neisseria gonorrhoeae DGI18]
gi|240080847|ref|ZP_04725390.1| transcription elongation factor GreA [Neisseria gonorrhoeae FA19]
gi|240115541|ref|ZP_04729603.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID18]
gi|240117836|ref|ZP_04731898.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID1]
gi|240121785|ref|ZP_04734747.1| transcription elongation factor GreA [Neisseria gonorrhoeae
PID24-1]
gi|240125640|ref|ZP_04738526.1| transcription elongation factor GreA [Neisseria gonorrhoeae
SK-92-679]
gi|268596964|ref|ZP_06131131.1| transcription elongation factor [Neisseria gonorrhoeae FA19]
gi|268601215|ref|ZP_06135382.1| transcription elongation factor [Neisseria gonorrhoeae PID18]
gi|268603535|ref|ZP_06137702.1| transcription elongation factor [Neisseria gonorrhoeae PID1]
gi|268684227|ref|ZP_06151089.1| transcription elongation factor [Neisseria gonorrhoeae SK-92-679]
gi|268550752|gb|EEZ45771.1| transcription elongation factor [Neisseria gonorrhoeae FA19]
gi|268585346|gb|EEZ50022.1| transcription elongation factor [Neisseria gonorrhoeae PID18]
gi|268587666|gb|EEZ52342.1| transcription elongation factor [Neisseria gonorrhoeae PID1]
gi|268624511|gb|EEZ56911.1| transcription elongation factor [Neisseria gonorrhoeae SK-92-679]
Length = 158
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 61 RISELEHKLSVAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y I++V +I
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYGIIEVRYI 158
>gi|302037858|ref|YP_003798180.1| transcription elongation factor GreA [Candidatus Nitrospira
defluvii]
gi|300605922|emb|CBK42255.1| Transcription elongation factor GreA [Candidatus Nitrospira
defluvii]
Length = 158
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/152 (45%), Positives = 104/152 (68%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T KG++ ++ EL + ERPR+I+AI+EARA+GDLSENAEY AAKE Q E R+AE
Sbjct: 4 PITRKGYEALKAELDRLHKVERPRVIEAIAEARAHGDLSENAEYDAAKERQGFIEARLAE 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + +IDI+ + + + FGATV L+E+ + KK Y +VG EAD++ +S+ SP
Sbjct: 64 LKGKLADCRIIDIAGRTSETVVFGATVVLIEQEAQAKKQYTLVGQDEADLKFSRISVQSP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ RALIGK +GD++ V P YE++++ +
Sbjct: 124 VGRALIGKRVGDMVEVTTPAKIVEYEVMEIRF 155
>gi|58699052|ref|ZP_00373893.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225630273|ref|YP_002727064.1| transcription elongation factor GreA [Wolbachia sp. wRi]
gi|58534429|gb|EAL58587.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225592254|gb|ACN95273.1| transcription elongation factor GreA [Wolbachia sp. wRi]
Length = 164
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 116/160 (72%), Gaps = 4/160 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+++K P+T +GF+ +Q EL + +EE+P +I+AIS+AR GDLSENAEY AA+E E
Sbjct: 5 IINKFPMTREGFENMQAELE-KLKEEKPSVIQAISDARDQGDLSENAEYHAARERLGFIE 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATV--SLVEKNSGDKKN-YQIVGDQEADVQS 117
GR+ E+E+ ++ AEVI++ +SGD + FGATV S++ N+G+ + Y++VG+ EADV
Sbjct: 64 GRIMEIESKLSHAEVIEVKNLSGDSVMFGATVTLSMLSDNNGEVEYVYKVVGEYEADVSK 123
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ +
Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPNGEKLYKIVKIEF 163
>gi|254428856|ref|ZP_05042563.1| transcription elongation factor GreA subfamily [Alcanivorax sp.
DG881]
gi|196195025|gb|EDX89984.1| transcription elongation factor GreA subfamily [Alcanivorax sp.
DG881]
Length = 153
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 111/153 (72%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+KG +++EL ++E+RPRI AI+EAR +GDL ENAEY AA+E Q EGR+ ++
Sbjct: 1 MTAKGAKALREELEKLKKEDRPRISAAIAEAREHGDLKENAEYHAAREQQGFCEGRIGDI 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A++IDI T+ ++ FG TV++++ ++ + K YQIVGD EA+++ G +S++SP
Sbjct: 61 EGKLSNAQIIDIQTIENTGKVIFGVTVTIIDVDTDETKVYQIVGDDEANIKEGKLSVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIG+E GD++ ++ PGG + YE+ QV I
Sbjct: 121 IARGLIGREEGDVVQIDTPGGTREYEVDQVEHI 153
>gi|316984555|gb|EFV63520.1| transcription elongation factor GreA domain protein [Neisseria
meningitidis H44/76]
Length = 173
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 16 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 75
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 76 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVIYQIVGEDEADIKQGKI 135
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 136 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 173
>gi|99034137|ref|ZP_01314235.1| hypothetical protein Wendoof_01000975 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 164
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 116/160 (72%), Gaps = 4/160 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+++K P+T +GF+ IQ EL + +EE+P +I+AIS+AR GDLSENAEY AA+E E
Sbjct: 5 IINKFPMTREGFEDIQAELE-KLKEEKPSVIQAISDARDQGDLSENAEYHAARERLGFIE 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSL--VEKNSGDKKN-YQIVGDQEADVQS 117
GR+ E+E+ ++ AEVI++ +SGD + FGATV+L + N+G+ + Y++VG+ EADV
Sbjct: 64 GRIMEIESKLSHAEVIEVKNLSGDSVIFGATVTLRMLSDNNGEVEYVYKVVGEYEADVSK 123
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ +
Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPNGEKLYKIVKIEF 163
>gi|192360133|ref|YP_001983144.1| transcription elongation factor [Cellvibrio japonicus Ueda107]
gi|190686298|gb|ACE83976.1| transcription elongation factor [Cellvibrio japonicus Ueda107]
Length = 159
Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T G +K++ EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q+ E
Sbjct: 1 MSTKFPMTITGAEKLRLELEDLKKVQRPRIVQAIAEAREHGDLKENAEYSAAREQQSFCE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E ++ A++ID++T+ ++ FG TV+++ + YQIVGD EA+V++
Sbjct: 61 GRIKEIEGKLSNAQIIDVTTIPHTGKVIFGTTVTIINIETEQALTYQIVGDDEAEVKANK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S++SPIARAL+GKE GD++ V APGG+ YEI +V
Sbjct: 121 ISVNSPIARALVGKEEGDVVIVRAPGGDVEYEIDKV 156
>gi|238755147|ref|ZP_04616493.1| Transcription elongation factor greA [Yersinia ruckeri ATCC 29473]
gi|238706594|gb|EEP98965.1| Transcription elongation factor greA [Yersinia ruckeri ATCC 29473]
Length = 158
Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G D++++EL + + RP+II I++AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTIRGADQLREELDYLKGVRRPKIIADIADAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VIDI+ M + R+ F +TV+++ ++ +++ Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFASTVTVLNLDTEEQQTYRIVGDDEADFKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D++ + PGG+ +EIL+V ++
Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGDVEFEILKVEYL 158
>gi|298368446|ref|ZP_06979764.1| transcription elongation factor GreA [Neisseria sp. oral taxon 014
str. F0314]
gi|298282449|gb|EFI23936.1| transcription elongation factor GreA [Neisseria sp. oral taxon 014
str. F0314]
Length = 158
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQHLKSVARPEIIEAIAEARSHGDLSENAEYEAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE ++ A +I+ + + + +I FG+TV+L + + ++ YQIVG+ EAD++ +
Sbjct: 61 RISELEYKLSVAHIINPAEIHAEGKIVFGSTVTLEDMETEEQVTYQIVGEDEADIKEHKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD+ V APGG + Y+I+ V +I
Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIISVEYI 158
>gi|103486475|ref|YP_616036.1| transcription elongation factor GreA [Sphingopyxis alaskensis
RB2256]
gi|123253395|sp|Q1GUG9|GREA_SPHAL RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|98976552|gb|ABF52703.1| transcription elongation factor GreA [Sphingopyxis alaskensis
RB2256]
Length = 158
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 76/157 (48%), Positives = 112/157 (71%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+K+P+ ++G++K+ +L + E RP I+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 VEKVPMLAEGYEKLTAQLAALKAE-RPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ +LE+ ++RA+VID +T+SGDRI FGATV+L +++ K YQIVG EAD ++G +S
Sbjct: 63 TIGDLEDKLSRAQVIDPTTLSGDRIVFGATVTLTDEDDKPVK-YQIVGQAEADAKAGKIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ RALIG+ + D I V P G+K Y + ++ +I
Sbjct: 122 YNSPLGRALIGRRVDDEIEVTVPSGDKYYLVTKIEFI 158
>gi|238761759|ref|ZP_04622733.1| Transcription elongation factor greA [Yersinia kristensenii ATCC
33638]
gi|238699873|gb|EEP92616.1| Transcription elongation factor greA [Yersinia kristensenii ATCC
33638]
Length = 158
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVNGAEKLREELDFLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VIDI+ M + R+ FG+TV ++ S +++ Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGSTVRVLNVVSEEEQQYRIVGDDEADFKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ D++ + PGGE YEIL V ++
Sbjct: 123 NSPIARGLIGKEVDDVVVIRTPGGEVEYEILSVDYV 158
>gi|114330476|ref|YP_746698.1| transcription elongation factor GreA [Nitrosomonas eutropha C91]
gi|114307490|gb|ABI58733.1| transcription elongation factor GreA [Nitrosomonas eutropha C91]
Length = 158
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/158 (51%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ IP+T G +K++ EL + RP II AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MNAIPITQSGAEKLRAELHEMKTVHRPAIIAAIAEARSHGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A++I+ + ++ D FGATV LV+ ++ YQ+VGD EAD++ G +
Sbjct: 61 RIAELESKLSNAQIINPAALNADGACVFGATVDLVDLDTNTAVTYQVVGDDEADIKEGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ V APGG + YEIL V +I
Sbjct: 121 SISSPIARALIGKYAGDVAEVQAPGGIREYEILDVKYI 158
>gi|308050593|ref|YP_003914159.1| transcription elongation factor GreA [Ferrimonas balearica DSM
9799]
gi|307632783|gb|ADN77085.1| transcription elongation factor GreA [Ferrimonas balearica DSM
9799]
Length = 158
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 114/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
++P+T +G + +++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q L E R+
Sbjct: 3 QVPMTVRGAELLREELDYLKHTRRPKITEAIAAARELGDLKENAEYHAAREEQGLTEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E+ ++ A++ID++ + + RI FGAT +L+ S + Y+IVGD EAD+++GL+S+
Sbjct: 63 RDIESKLSVAQIIDVTKIPNNGRIIFGATATLLNVESDQEVTYRIVGDDEADLKAGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIARA+IGKEL D++ V AP G+ YE+++V ++
Sbjct: 123 NSPIARAMIGKELDDVLVVKAPSGDIEYEVVEVKYL 158
>gi|42520503|ref|NP_966418.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42410242|gb|AAS14352.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 164
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 116/160 (72%), Gaps = 4/160 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+++K P+T +GF+ +Q EL + +EE+P +I+AIS+AR GDLSENAEY AA+E E
Sbjct: 5 IINKFPMTREGFENMQAELE-KLKEEKPSVIQAISDARDQGDLSENAEYHAARERLGFIE 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSL--VEKNSGDKKN-YQIVGDQEADVQS 117
GR+ E+E+ ++ AEVI++ +SGD + FGATV+L + N+G+ + Y++VG+ EADV
Sbjct: 64 GRIMEIESKLSHAEVIEVKNLSGDSVIFGATVTLRMLSDNNGEVEYVYKVVGEYEADVSK 123
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ +
Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPNGEKLYKIVKIEF 163
>gi|197118284|ref|YP_002138711.1| transcription elongation factor GreA [Geobacter bemidjiensis Bem]
gi|197087644|gb|ACH38915.1| transcription elongation factor GreA [Geobacter bemidjiensis Bem]
Length = 158
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 111/157 (70%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +P+T + ++ +Q++L+ +EERP++I+ I+EARA+GDLSENAEY AAK Q E
Sbjct: 1 MSQTVPLTKESYEALQEDLKRLIKEERPKVIQDIAEARAHGDLSENAEYDAAKNRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL + + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ +
Sbjct: 61 GRILELGDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEELTYKIVGEDEADIKQCKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+ +ALIG +L D + V+ P G K YEI+++ +
Sbjct: 121 SCTSPVGKALIGHKLDDSVRVSVPAGVKEYEIIEIRY 157
>gi|167855522|ref|ZP_02478284.1| transcription elongation factor GreA [Haemophilus parasuis 29755]
gi|219871300|ref|YP_002475675.1| transcription elongation factor GreA [Haemophilus parasuis SH0165]
gi|167853323|gb|EDS24575.1| transcription elongation factor GreA [Haemophilus parasuis 29755]
gi|219691504|gb|ACL32727.1| transcription elongation factor GreA [Haemophilus parasuis SH0165]
Length = 158
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G +++++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAEQLREELDFLKNVRRPEIISAITEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E+ + A++ID+ M + ++ FG+TV+L+ N+ + Y+IVGD EA+++ GL+S+
Sbjct: 63 KEIESKLGNAQIIDVKNMINTGKVIFGSTVTLLNVNTDECVTYRIVGDDEANIKDGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GKE+ D + + PGG ++I++V +I
Sbjct: 123 NSPIARGLVGKEIDDNVHIQTPGGNVEFDIIKVEYI 158
>gi|320540168|ref|ZP_08039823.1| putative transcription elongation factor [Serratia symbiotica str.
Tucson]
gi|320029834|gb|EFW11858.1| putative transcription elongation factor [Serratia symbiotica str.
Tucson]
Length = 158
Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T G +K+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTLFGAEKLREELEYLKSVRRPKIIADIADAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VIDI+ + R+ FGATVS++ +S ++ Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDITKIPNTGRVIFGATVSVLNLDSEEEVTYRIVGDDEADFKKNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+AR LIGKE D++ + PGG+ YEIL+V ++
Sbjct: 123 NSPMARGLIGKEQDDVVVIKTPGGDVDYEILKVEYL 158
>gi|270265050|ref|ZP_06193313.1| transcription elongation factor GreA [Serratia odorifera 4Rx13]
gi|270040984|gb|EFA14085.1| transcription elongation factor GreA [Serratia odorifera 4Rx13]
Length = 158
Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTLFGAEKLREELEYLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VIDI+ M + R+ FG+TVS++ +S ++ Y+IVGD EAD + L+S+
Sbjct: 63 QEIEAKLSNAQVIDITKMPNNGRVIFGSTVSVMNLDSEEEVTYRIVGDDEADFKKNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+AR LIGKE D++ + PGG+ YEIL+V ++
Sbjct: 123 NSPMARGLIGKEQDDVVVIKTPGGDVDYEILKVEYL 158
>gi|331007340|ref|ZP_08330536.1| Transcription elongation factor GreA [gamma proteobacterium
IMCC1989]
gi|330418856|gb|EGG93326.1| Transcription elongation factor GreA [gamma proteobacterium
IMCC1989]
Length = 153
Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G D +Q EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q+ EGR+ E+
Sbjct: 1 MTKRGADALQAELDDLKKVQRPRIVQAIAEAREHGDLKENAEYHAAREQQSFCEGRLQEI 60
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ +++IDI ++ R+ FG TVSL+ ++ +K YQIVGD EADV+ G +S++SP
Sbjct: 61 EGKLSNSQIIDIMSLPCTGRVIFGVTVSLLNLDTDEKVTYQIVGDDEADVKQGKISVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGK GD +++ P GE YEI V I
Sbjct: 121 IARGLIGKSEGDDVAIKTPSGEVEYEIEAVKHI 153
>gi|109898530|ref|YP_661785.1| transcription elongation factor GreA [Pseudoalteromonas atlantica
T6c]
gi|109700811|gb|ABG40731.1| transcription elongation factor GreA [Pseudoalteromonas atlantica
T6c]
Length = 158
Score = 147 bits (370), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T+KG + +++EL+ + +RP IIK+I+EAR +GDL ENAEY AA+E Q+ EGR+ +
Sbjct: 5 PMTAKGAEMLREELQHLKSVKRPEIIKSIAEAREHGDLKENAEYHAAREQQSFCEGRIQD 64
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E ++ ++ID++ M+ ++ FG TV+++ S ++ Y+IVGD EAD+++ L+S+SS
Sbjct: 65 IEGKLSNVQIIDVTKMTNTGKVIFGTTVTILNLQSDEEITYKIVGDDEADIKNNLISVSS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
PIAR LIGK+L D++++ P G +EI++V ++
Sbjct: 125 PIARGLIGKQLDDVVTIQTPKGAIEFEIIEVEYV 158
>gi|239815600|ref|YP_002944510.1| transcription elongation factor GreA [Variovorax paradoxus S110]
gi|239802177|gb|ACS19244.1| transcription elongation factor GreA [Variovorax paradoxus S110]
Length = 158
Score = 147 bits (370), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 82/155 (52%), Positives = 113/155 (72%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K++ EL + +RP +I AISEARA GDLSENAEY+ AK+ Q EGR+
Sbjct: 4 IPITKRGAEKLRAELHQLKTVDRPWVINAISEARAQGDLSENAEYEVAKDRQGFIEGRIQ 63
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A++ID + + +G ++ FG+TV L E+ SG+ YQIVG+ EAD++ GL++IS
Sbjct: 64 EVEGKLSAAQIIDPAELDAGGKVVFGSTVELEEEESGEAVKYQIVGEDEADLKLGLINIS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALIGKE GD V APGG K YEI+ V +I
Sbjct: 124 SPIARALIGKEEGDTAEVQAPGGLKRYEIVAVRYI 158
>gi|119504338|ref|ZP_01626418.1| GreA/GreB family elongation factor [marine gamma proteobacterium
HTCC2080]
gi|119459846|gb|EAW40941.1| GreA/GreB family elongation factor [marine gamma proteobacterium
HTCC2080]
Length = 158
Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G ++ EL ++E+RPRII+AI+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MNKVPMTVAGEQSLRDELDRLKREDRPRIIQAIAEAREHGDLKENAEYHAAREQQSFAEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E+ ++ A++ID+S + ++ FG TV L+ + + Y+IVG+ E+DV++ L+
Sbjct: 61 RIQDIEHKLSHAQIIDVSAIPNTGKVIFGTTVDLINTENDNPVTYRIVGEDESDVKANLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARAL+GK GD + V AP G+ YEI +V I
Sbjct: 121 SVSSPIARALVGKSEGDEVVVKAPSGDIYYEIERVHHI 158
>gi|330813686|ref|YP_004357925.1| transcription elongation factor GreA [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486781|gb|AEA81186.1| transcription elongation factor GreA [Candidatus Pelagibacter sp.
IMCC9063]
Length = 158
Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 79/159 (49%), Positives = 107/159 (67%), Gaps = 3/159 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +G +KI+ EL R+ R +I+ AISEAR++GDL ENAEY AAKE Q LNE
Sbjct: 1 MEKEPITIQGLEKIKSELDDRKHTTRSKIVMAISEARSHGDLKENAEYHAAKEEQGLNEK 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKN-YQIVGDQEADVQSGL 119
R+ ELE I AEVIDI + D ++ F +T+ +V+ GDKKN Y+IVG EADV++GL
Sbjct: 61 RIQELETSIAMAEVIDIRKIPNDNKVIFSSTI-IVKDLDGDKKNTYKIVGRDEADVKNGL 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SP+ R IGK D + + P GEK +EIL V +I
Sbjct: 120 IYYKSPLGRGFIGKNKEDFVVIETPSGEKNFEILDVKYI 158
>gi|304396338|ref|ZP_07378219.1| GreA/GreB family elongation factor [Pantoea sp. aB]
gi|304355847|gb|EFM20213.1| GreA/GreB family elongation factor [Pantoea sp. aB]
Length = 158
Score = 147 bits (370), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +++++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGAERLREELNELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M R+ FGATV+++ + ++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR L+GKE D+ V PGG+ YEIL+V ++
Sbjct: 121 SVNSPMARGLVGKEADDVAIVKTPGGDVEYEILKVEYL 158
>gi|149184452|ref|ZP_01862770.1| transcription elongation factor [Erythrobacter sp. SD-21]
gi|148831772|gb|EDL50205.1| transcription elongation factor [Erythrobacter sp. SD-21]
Length = 155
Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 77/157 (49%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+ ++G++K+ +L+ + E RPRI+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 1 MDKVPMLAEGYEKLTADLKVLRAE-RPRIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ +LE+ I+RA++ID +T+SGD++ FGATV+L++++ K YQIVG EAD G +S
Sbjct: 60 MIGDLEDKISRAQIIDPTTLSGDKVIFGATVTLLDEDDKPVK-YQIVGQTEADASKGRIS 118
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIARALIGK++ + + V P G+K Y I ++ +I
Sbjct: 119 YTSPIARALIGKQVEEEVEVTVPSGDKFYLIDKIEFI 155
>gi|88657640|ref|YP_506961.1| transcription elongation factor GreA [Ehrlichia chaffeensis str.
Arkansas]
gi|88599097|gb|ABD44566.1| transcription elongation factor GreA [Ehrlichia chaffeensis str.
Arkansas]
Length = 162
Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 115/163 (70%), Gaps = 6/163 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + P+T GF K++ EL + E RP+IIK+ISEAR GDLSENAEY AA+E Q L E
Sbjct: 1 MNARFPITKNGFAKLELELESLKHE-RPKIIKSISEARELGDLSENAEYHAARERQGLVE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATV--SLVEKNSG--DKKNYQIVGDQEADVQ 116
++ ELE+ +RAEVID+S +SGD + FGATV S+ ++ +G D+ YQIVG+ EAD+
Sbjct: 60 SKIMELESKKSRAEVIDVSNLSGDTVMFGATVTMSIYDEQTGNTDEVVYQIVGEYEADIS 119
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158
++SI SP+ +L+GK+ GD++ V P G+ + Y+I+++ +I
Sbjct: 120 KQMISIKSPLVVSLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 162
>gi|308189104|ref|YP_003933235.1| Transcription elongation factor greA [Pantoea vagans C9-1]
gi|308059614|gb|ADO11786.1| Transcription elongation factor greA [Pantoea vagans C9-1]
Length = 158
Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +++++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGAERLREELNELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M R+ FGATV+++ + ++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVTVLNVETDEEATYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR L+GKE D+ V PGG+ YEIL+V ++
Sbjct: 121 SVNSPMARGLVGKEADDVAIVKTPGGDVEYEILKVEYL 158
>gi|253700924|ref|YP_003022113.1| transcription elongation factor GreA [Geobacter sp. M21]
gi|251775774|gb|ACT18355.1| transcription elongation factor GreA [Geobacter sp. M21]
Length = 158
Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 111/157 (70%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +P+T + ++ +Q++L+ +EERP++I+ I+EARA+GDLSENAEY AAK Q E
Sbjct: 1 MSQTVPLTKESYEALQEDLKRLIKEERPKVIQDIAEARAHGDLSENAEYDAAKNRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL + + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ +
Sbjct: 61 GRILELGDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEELTYKIVGEDEADIKLCKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+ +ALIG +L D + V+ P G K YEI+++ +
Sbjct: 121 SCTSPVGKALIGHKLDDSVRVSVPSGVKEYEIIEIRY 157
>gi|149194430|ref|ZP_01871527.1| transcription elongation factor GreA [Caminibacter mediatlanticus
TB-2]
gi|149135605|gb|EDM24084.1| transcription elongation factor GreA [Caminibacter mediatlanticus
TB-2]
Length = 162
Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 73/154 (47%), Positives = 103/154 (66%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T G++K+ +EL + + RP + K I AR GDL ENAEY AAKE Q E R+
Sbjct: 2 KEPMTKYGYEKLSKELEYLKTVARPEVAKEIDAARELGDLKENAEYHAAKEKQAHIERRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL +I++RA V+D + DR++FG+TV LV+ +S ++ Y IVG EAD GL+S +
Sbjct: 62 AELSDILSRAVVVDPKEHAHDRVSFGSTVYLVDLDSDEEFKYTIVGAPEADPDKGLISYN 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A+ALIGK +GD + VN P G K YEI ++ +
Sbjct: 122 SPLAKALIGKHVGDEVEVNLPSGTKYYEIEKICF 155
>gi|309785509|ref|ZP_07680140.1| transcription elongation factor GreA domain protein [Shigella
dysenteriae 1617]
gi|25321427|pir||D91136 transcription elongation factor GreA ECs4060 [imported] -
Escherichia coli (strain O157:H7, substrain RIMD
0509952)
gi|25321434|pir||G85981 transcription elongation factor greA [similarity] - Escherichia
coli (strain O157:H7, substrain EDL933)
gi|12517796|gb|AAG58315.1|AE005547_1 transcription elongation factor: cleaves 3' nucleotide of paused
mRNA [Escherichia coli O157:H7 str. EDL933]
gi|606119|gb|AAA57982.1| greA [Escherichia coli str. K-12 substr. MG1655]
gi|13363533|dbj|BAB37483.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
Sakai]
gi|73857195|gb|AAZ89902.1| transcription elongation factor [Shigella sonnei Ss046]
gi|81242643|gb|ABB63353.1| transcription elongation factor [Shigella dysenteriae Sd197]
gi|81246992|gb|ABB67700.1| transcription elongation factor [Shigella boydii Sb227]
gi|209758228|gb|ACI77426.1| transcription elongation factor GreA [Escherichia coli]
gi|209758230|gb|ACI77427.1| transcription elongation factor GreA [Escherichia coli]
gi|209758232|gb|ACI77428.1| transcription elongation factor GreA [Escherichia coli]
gi|209758234|gb|ACI77429.1| transcription elongation factor GreA [Escherichia coli]
gi|209758236|gb|ACI77430.1| transcription elongation factor GreA [Escherichia coli]
gi|308926629|gb|EFP72105.1| transcription elongation factor GreA domain protein [Shigella
dysenteriae 1617]
gi|323154395|gb|EFZ40596.1| transcription elongation factor GreA domain protein [Escherichia
coli EPECa14]
gi|323173559|gb|EFZ59188.1| transcription elongation factor GreA domain protein [Escherichia
coli LT-68]
gi|327251272|gb|EGE62961.1| transcription elongation factor GreA domain protein [Escherichia
coli STEC_7v]
Length = 153
Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 111/153 (72%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ ++
Sbjct: 1 MTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDI 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+S++SP
Sbjct: 61 EAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGKE D++ + PGGE +E+++V ++
Sbjct: 121 IARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 153
>gi|68171284|ref|ZP_00544685.1| Prokaryotic transcription elongation factor GreA [Ehrlichia
chaffeensis str. Sapulpa]
gi|67999299|gb|EAM85947.1| Prokaryotic transcription elongation factor GreA [Ehrlichia
chaffeensis str. Sapulpa]
Length = 166
Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 78/163 (47%), Positives = 115/163 (70%), Gaps = 6/163 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + P+T GF K++ EL + E RP+IIK+ISEAR GDLSENAEY AA+E Q L E
Sbjct: 5 MNARFPITKNGFAKLELELESLKHE-RPKIIKSISEARELGDLSENAEYHAARERQGLVE 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATV--SLVEKNSG--DKKNYQIVGDQEADVQ 116
++ ELE+ +RAEVID+S +SGD + FGATV S+ ++ +G D+ YQIVG+ EAD+
Sbjct: 64 SKIMELESKKSRAEVIDVSNLSGDTVMFGATVTMSIYDEQTGNTDEVVYQIVGEYEADIS 123
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158
++SI SP+ +L+GK+ GD++ V P G+ + Y+I+++ +I
Sbjct: 124 KQMISIKSPLVVSLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 166
>gi|332185724|ref|ZP_08387471.1| transcription elongation factor GreA domain protein [Sphingomonas
sp. S17]
gi|332014082|gb|EGI56140.1| transcription elongation factor GreA domain protein [Sphingomonas
sp. S17]
Length = 158
Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 117/157 (74%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+K+P+ +G+DK+ Q+LR R +EERP+I+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 VEKMPMLQEGYDKLTQDLR-RLKEERPQIVDAIEEARAHGDLSENAEYHAAKERQGQIEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+A++E+ ++RA++ID +SGD+I FGATV+L++++ K YQIVG EAD ++G +S
Sbjct: 63 SIADIEDKLSRAQIIDPKDLSGDKIVFGATVTLLDEDDKPVK-YQIVGQTEADAKTGRIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ RALIG+++ + + V P G++ Y + ++ +I
Sbjct: 122 YNSPLGRALIGRKVEEEVEVTVPSGDRYYLVSKIEFI 158
>gi|329297293|ref|ZP_08254629.1| GreA [Plautia stali symbiont]
Length = 158
Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T KG +K+++EL + +RPRII +I+EAR GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLKGAEKLREELNELKTVKRPRIIASIAEARELGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M R+ FGATV+++ ++ ++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTAMPKTGRVIFGATVTVLNVDTDEEFTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR L+GKE D+ V P G+ YE+L+V +I
Sbjct: 121 SVNSPMARGLMGKEADDVAIVKTPSGDVEYEVLKVEYI 158
>gi|312884007|ref|ZP_07743724.1| transcription elongation factor GreA [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368465|gb|EFP96000.1| transcription elongation factor GreA [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 157
Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 75/158 (47%), Positives = 116/158 (73%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGELKLRDELD-RLLKLRPKISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FGATV+L++ ++ D+K YQIVGD EAD++SGL+
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNTGKVIFGATVTLIDCDTEDEKTYQIVGDDEADIKSGLI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD + ++ PGG++ +EI V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGDRDFEIDSVQYI 157
>gi|33519573|ref|NP_878405.1| transcription elongation factor GreA [Candidatus Blochmannia
floridanus]
gi|33517236|emb|CAD83619.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Candidatus Blochmannia floridanus]
Length = 162
Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T G +K++++L + + RP IIK ISEAR +GDL EN+EY AA+E Q EG
Sbjct: 5 IERIPMTQNGVEKLRKKLEYLKNVLRPEIIKNISEARKHGDLKENSEYHAAREQQGFCEG 64
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A +ID++ ++ + ++ FG TV + + ++ K+ Y+IVGD EA+ + ++
Sbjct: 65 RIQEIEFKLSNAYIIDVTKVAEEQKVVFGVTVCVEKLDTQSKQVYRIVGDDEANYKKNMI 124
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI+SPIAR LIG +GDI+++N P G TY+I+Q+ ++
Sbjct: 125 SINSPIARGLIGNTIGDIVTINTPQGNITYKIIQIQYV 162
>gi|119944570|ref|YP_942250.1| transcription elongation factor GreA [Psychromonas ingrahamii 37]
gi|189042245|sp|A1ST36|GREA_PSYIN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|119863174|gb|ABM02651.1| transcription elongation factor GreA [Psychromonas ingrahamii 37]
Length = 159
Score = 146 bits (368), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 108/154 (70%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T+ G K++ EL+ + RPRI+KAI+EAR +GDL ENAEY AA+E Q EGR+ +
Sbjct: 5 PMTANGAAKLRSELKQLKTVTRPRIVKAIAEAREHGDLKENAEYHAAREQQGFCEGRIQD 64
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E ++ A +IDI+ ++ + ++ FGATV++V + + Y+IVGD EA+++ L+S+SS
Sbjct: 65 IEAKLSNARIIDITNITNNGKVIFGATVTIVNVETDAEVTYKIVGDDEANIKINLISVSS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+AR LIGK L D IS+ PGG YEI+ V +I
Sbjct: 125 PLARGLIGKTLDDEISIVTPGGTIDYEIISVQYI 158
>gi|77166029|ref|YP_344554.1| transcription elongation factor GreA [Nitrosococcus oceani ATCC
19707]
gi|254436361|ref|ZP_05049867.1| transcription elongation factor GreA subfamily [Nitrosococcus
oceani AFC27]
gi|123593533|sp|Q3J822|GREA_NITOC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|76884343|gb|ABA59024.1| transcription elongation factor GreA [Nitrosococcus oceani ATCC
19707]
gi|207088051|gb|EDZ65324.1| transcription elongation factor GreA subfamily [Nitrosococcus
oceani AFC27]
Length = 158
Score = 146 bits (368), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T KG ++++EL+ + RP+++ AI+EARA+GDL ENAEY AA+E Q EG
Sbjct: 1 MNKVPLTEKGAQQLREELQELKTVVRPKVVTAIAEARAHGDLKENAEYHAAREEQGFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +LE+ + A++ID+S + D R+ FG TV LV + ++ +YQIVGD EA+++ +
Sbjct: 61 RIRDLEHQLAHAQIIDVSKLQKDGRVVFGVTVDLVNIETDEEASYQIVGDLEANIKENKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIARALIGK GD I V AP G YEI + +
Sbjct: 121 SINSPIARALIGKREGDEIQVQAPSGIILYEIAAIGY 157
>gi|319956761|ref|YP_004168024.1| transcription elongation factor grea [Nitratifractor salsuginis DSM
16511]
gi|319419165|gb|ADV46275.1| transcription elongation factor GreA [Nitratifractor salsuginis DSM
16511]
Length = 161
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 107/156 (68%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+ + K+ QEL + EER +I K I EARA GDL ENAEY AAKE Q L E
Sbjct: 1 MQKEPMFESTYQKLSQELEQLKNEERAKIAKVIDEARALGDLKENAEYHAAKEKQGLMEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ EL++++ RA+VID S ++ R++FG+TV LV++++ ++ Y IVG QE+D GL+S
Sbjct: 61 RIIELQDLLARAQVIDPSKLAHQRVSFGSTVVLVDQDTDEEVRYVIVGTQESDPSRGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+GKE G+ + + P G K ++I ++ +
Sbjct: 121 IQSPMARALLGKEEGEEVELQLPSGRKHFDIEEIKY 156
>gi|262276837|ref|ZP_06054630.1| transcription elongation factor [alpha proteobacterium HIMB114]
gi|262223940|gb|EEY74399.1| transcription elongation factor [alpha proteobacterium HIMB114]
Length = 158
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK P+T G KI+ EL R+ RP+I++AI+EAR++GDL ENAEY AAKE Q LNE
Sbjct: 1 MDKQPITLSGLQKIRVELDDRKNNTRPKIVQAIAEARSHGDLKENAEYHAAKEEQGLNER 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE I A VID++ + D++ FGAT+++ + + + Y+IVG EADV++GL+
Sbjct: 61 RIKELETTIATANVIDVTKLKKDDKVIFGATITVKDLETDKESKYKIVGKDEADVKNGLL 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ R IGK G+ + P GEK +EI V +I
Sbjct: 121 FYQSPMGRGFIGKIKGEFAEIKTPSGEKNFEITNVQYI 158
>gi|77919210|ref|YP_357025.1| transcription elongation factor GreA [Pelobacter carbinolicus DSM
2380]
gi|123770456|sp|Q3A452|GREA_PELCD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|77545293|gb|ABA88855.1| GreA/GreB family elongation factor [Pelobacter carbinolicus DSM
2380]
Length = 158
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 107/158 (67%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +P+T +G+ +Q EL+ + ERP++++ I+EAR++GDLSENAEY AAK Q E
Sbjct: 1 MSQSVPMTEEGYRSLQDELKHLIRVERPKVVQDIAEARSHGDLSENAEYDAAKNRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL + I RAEVI + D+I FGA+V+L + ++ + Y+IVG+ EAD++ G +
Sbjct: 61 GRIKELNDKIARAEVIKPGDVVTDKIVFGASVTLFDVDTDSEVTYKIVGEDEADLKHGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+ RALIG L D + + P G K YE++ + ++
Sbjct: 121 SVTSPVGRALIGHRLDDEVRIKVPSGLKIYEVVNIAYM 158
>gi|262197389|ref|YP_003268598.1| transcription elongation factor GreA [Haliangium ochraceum DSM
14365]
gi|262080736|gb|ACY16705.1| transcription elongation factor GreA [Haliangium ochraceum DSM
14365]
Length = 169
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 108/158 (68%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DK P+T G ++ +L+ ++ +RP KAI AR +GDLSENA+Y AAKE Q + E
Sbjct: 1 MADKFPMTPSGHAWMKAQLKKLKEVDRPANAKAIEVARGHGDLSENADYDAAKEEQGMIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E E + +EVID + +SG+R+ FGATV++ + ++GD+ Y IVG+ EAD+++ +
Sbjct: 61 ARIREYEAKLALSEVIDPTKLSGERVKFGATVTVEDIDTGDEATYTIVGEHEADIKNKRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+++P+ARALIGK +GD V P G + +EI+ V W+
Sbjct: 121 SVTAPVARALIGKAIGDETQVQTPKGTRAFEIVDVKWL 158
>gi|213421313|ref|ZP_03354379.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 150
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 109/150 (72%), Gaps = 1/150 (0%)
Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
+G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ ++E
Sbjct: 1 RGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAK 60
Query: 70 ITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR
Sbjct: 61 LSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIAR 120
Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVLWI 158
LIGKE D++ + PGG+ YE+L+V ++
Sbjct: 121 GLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 150
>gi|308272737|emb|CBX29341.1| Transcription elongation factor greA [uncultured Desulfobacterium
sp.]
Length = 155
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 108/155 (69%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+IP+T +G++ +++EL ++ ERP IKAI EARA+GDLSENAE+ AAK+ Q E
Sbjct: 1 MDRIPITKRGYETLKKELEHLKKVERPGNIKAIEEARAHGDLSENAEFAAAKDRQAYLEC 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ EL I A+VID ++ DR FG TV L ++GD YQ+VG E+D+ G +S
Sbjct: 61 RIGELSYKIGNADVIDPDSLPKDRAVFGCTVVLENIDTGDTIEYQLVGPDESDIGKGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+SSP+ A+IGK+ G+ I + APGG++ YE++++L
Sbjct: 121 VSSPLGMAIIGKKSGEEIVLQAPGGKRFYELVEIL 155
>gi|257095281|ref|YP_003168922.1| transcription elongation factor GreA [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047805|gb|ACV36993.1| transcription elongation factor GreA [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 158
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/157 (52%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T G +K++ EL + ERPR I AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MSKIPLTVHGAEKLRAELHHLKTVERPRAIAAIAEARSHGDLSENAEYDAAKERQGFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ + A++ID + D R FGAT+ L ++ SG + +YQIVG+ EAD+++G +
Sbjct: 61 RIKEVESKLANAQIIDPKLLDADGRCVFGATLELEDQESGSRVSYQIVGEDEADIKAGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIARALIGK GDI V APGG + YE+L V +
Sbjct: 121 SINSPIARALIGKFAGDIAEVQAPGGVREYEVLNVRY 157
>gi|322831206|ref|YP_004211233.1| transcription elongation factor GreA [Rahnella sp. Y9602]
gi|321166407|gb|ADW72106.1| transcription elongation factor GreA [Rahnella sp. Y9602]
Length = 158
Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 110/155 (70%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +++++EL + RP+II I+ AR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAERLREELDHLKSVRRPKIISDIATAREHGDLKENAEYHAAREQQGFCEGRIQ 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ A+VID++ M R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++
Sbjct: 64 EIEAKLSNAQVIDVTKMPATGRVIFGATVTVMNLDTEEEQKYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++ + PGG+ +E+L+V ++
Sbjct: 124 SPIARGLIGKEQDDVVVIKTPGGDVEFEVLKVEYL 158
>gi|307637553|gb|ADN80003.1| Transcription elongation factor [Helicobacter pylori 908]
gi|325996144|gb|ADZ51549.1| Transcription elongation factor [Helicobacter pylori 2018]
gi|325997740|gb|ADZ49948.1| Transcription elongation factor [Helicobacter pylori 2017]
Length = 164
Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 106/156 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICTELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II+ A+VID S ++ ++++FG+T+ ++ ++G + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIISNAQVIDPSALAHNKVSFGSTIKILNLDNGKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|160871787|ref|ZP_02061919.1| transcription elongation factor GreA [Rickettsiella grylli]
gi|159120586|gb|EDP45924.1| transcription elongation factor GreA [Rickettsiella grylli]
Length = 158
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T G +++EL + +RP++I AI+EAR++GDL ENAEY AAKE+Q EG
Sbjct: 1 MKKIPMTISGAQYLKKELHQLKTLKRPQVIAAIAEARSHGDLKENAEYHAAKEMQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+EN + A++ID++ ++ ++ FG+T+ L+ ++ ++ YQIVG+ EAD++ +
Sbjct: 61 RITEIENKLASAQIIDVTKLNNLGKVIFGSTIHLMNTHTHEQVTYQIVGEDEADIKHSKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGKE GD++ V P G I +V +I
Sbjct: 121 SVASPIARALIGKEEGDLVEVQTPSGLVNLAIDKVEYI 158
>gi|297569319|ref|YP_003690663.1| GreA/GreB family elongation factor [Desulfurivibrio alkaliphilus
AHT2]
gi|296925234|gb|ADH86044.1| GreA/GreB family elongation factor [Desulfurivibrio alkaliphilus
AHT2]
Length = 161
Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 114/155 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV++IP+T G +K++QEL Q+ ERPRII+AI AR +GDL ENAEY AAKE Q+ E
Sbjct: 1 MVERIPMTRNGHEKLRQELNQLQRVERPRIIQAIETAREHGDLKENAEYHAAKERQSHVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL++ ++R+EVID S + +R+ FG V+LV+ ++ D+ YQ++G +EA V+ G +
Sbjct: 61 GRIMELKDKLSRSEVIDCSALDCERVVFGVVVTLVDLDTDDEIRYQLLGPEEASVEDGSI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S+ SP+ RA+IGK +GD + V PGG + +E++++
Sbjct: 121 SVLSPLGRAMIGKSVGDEVVVKTPGGIRQFEVMEI 155
>gi|88608560|ref|YP_506547.1| transcription elongation factor GreA [Neorickettsia sennetsu str.
Miyayama]
gi|123763706|sp|Q2GD99|GREA_NEOSM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|88600729|gb|ABD46197.1| transcription elongation factor GreA [Neorickettsia sennetsu str.
Miyayama]
Length = 159
Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 111/154 (72%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T +G+ K+Q+EL + +P ++ A+++AR GDLSENAEY A++ Q+ EG++
Sbjct: 3 KLPITREGYCKLQEELEKLVKVVKPSVVAAVAQARELGDLSENAEYHEARKEQSFVEGKI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
EL+ ++ AEVID+S +G+R+ FGA+V+L S YQIVG+ E+D++ G +S+S
Sbjct: 63 RELQLCLSEAEVIDVSQFTGERVKFGASVTLENMESKSVLIYQIVGNLESDIKEGKISVS 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPI +A++ KE+G+I+ ++ P G+KTY+IL V +
Sbjct: 123 SPIGKAVMNKEVGEIVEIDLPSGKKTYKILGVEF 156
>gi|85858479|ref|YP_460681.1| transcription elongation factor [Syntrophus aciditrophicus SB]
gi|123725222|sp|Q2LR03|GREA_SYNAS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|85721570|gb|ABC76513.1| transcription elongation factor [Syntrophus aciditrophicus SB]
Length = 161
Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/154 (44%), Positives = 106/154 (68%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T GF+ +++EL + P IK I ARA+GDLSENAEY AAKE Q+ G
Sbjct: 1 MEKMPITKSGFENLKKELEHLKCVLIPANIKDIEIARAHGDLSENAEYTAAKEKQSFLHG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ ELEN + + VID+ +S DRI FGATV + E ++G + NYQ+VG E+++ +S
Sbjct: 61 KLQELENNLALSNVIDLKMLSDDRIVFGATVIIEEASTGKQTNYQLVGPFESNISENKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
++SPI +ALIGK +GD + V+ PGG + +E++ +
Sbjct: 121 VTSPIGKALIGKSIGDEVKVHTPGGIRNFEVVDI 154
>gi|146313249|ref|YP_001178323.1| transcription elongation factor GreA [Enterobacter sp. 638]
gi|145320125|gb|ABP62272.1| transcription elongation factor GreA [Enterobacter sp. 638]
Length = 158
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 111/155 (71%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIISAIADAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VIDI+ + R+ FGA+V ++ ++ +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDITKIPNTGRVIFGASVKVLNLDNDEEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGKE D++ + PGGE +EI++V ++
Sbjct: 124 SPIARGLIGKEEEDVVVIRTPGGEVEFEIIKVEYL 158
>gi|254482448|ref|ZP_05095687.1| transcription elongation factor GreA subfamily [marine gamma
proteobacterium HTCC2148]
gi|214037139|gb|EEB77807.1| transcription elongation factor GreA subfamily [marine gamma
proteobacterium HTCC2148]
Length = 158
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 75/159 (47%), Positives = 109/159 (68%), Gaps = 3/159 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G ++ EL ++ ERPRI AI++AR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MNKVPMTVAGEAALRSELEHLKKVERPRISDAIADAREHGDLKENAEYHAAREQQSFAEG 60
Query: 62 RMAELENIITRAEVIDIS--TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ E+E ++ +VID++ T +G ++ FG TV L+ S + Y IVG+ EADV++
Sbjct: 61 RIMEIEGKLSNCQVIDVTQITRTG-KVIFGTTVDLINVESDETVTYTIVGEDEADVKNNR 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S+ SPIARA+IGKE GD++ V APGG+ YEI QV I
Sbjct: 120 ISVGSPIARAMIGKEEGDVVLVKAPGGDIEYEIDQVQHI 158
>gi|330721348|gb|EGG99423.1| Transcription elongation factor GreA [gamma proteobacterium
IMCC2047]
Length = 158
Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 110/155 (70%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ +G ++++EL + ERPRII+AI+EARA+GDL ENAEY AA+E Q EG
Sbjct: 1 MNKFPMSKQGELQLREELERLKTIERPRIIEAIAEARAHGDLKENAEYHAAREEQGFTEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ +S ++ FG TV L ++ + +YQIVG+ EAD++ +
Sbjct: 61 RIQEIEGKLSNAQVIDVTAISNTGKVIFGVTVELENIDTEEVVSYQIVGEDEADMKQRKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SI+SPIAR LIGK GD++ VN PGG YEI+ V
Sbjct: 121 SITSPIARGLIGKVEGDVVGVNVPGGLVEYEIISV 155
>gi|108763574|ref|YP_631602.1| transcription elongation factor GreA [Myxococcus xanthus DK 1622]
gi|108467454|gb|ABF92639.1| transcription elongation factor GreA [Myxococcus xanthus DK 1622]
Length = 172
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 107/153 (69%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D IP+T G K+++EL+ Q ER +I + I ARA+GDL ENAEY AAKE Q+ EGR
Sbjct: 6 DNIPMTPSGLRKLKEELKHLQSVERGKISREIEVARAHGDLRENAEYHAAKEKQSHIEGR 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + I RAEVID + GD++ FGATV L++ + +Y++VG+ EAD++ +++
Sbjct: 66 ILTLNDWIARAEVIDPKKLGGDKVIFGATVDLLDTETDKPVSYRLVGEIEADLKKRWIAV 125
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+SP+ARALIGK++GDI +V +PGG + E+ ++
Sbjct: 126 TSPVARALIGKKVGDIATVQSPGGVRELEVQEI 158
>gi|307546737|ref|YP_003899216.1| transcription elongation factor GreA [Halomonas elongata DSM 2581]
gi|307218761|emb|CBV44031.1| transcription elongation factor GreA [Halomonas elongata DSM 2581]
Length = 158
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 108/155 (69%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G +++ EL + E RP +I AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNKVPMTVVGEQRLRDELEHLKSEARPNVIAAIAEAREHGDLKENAEYHAAREQQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ + ++ FG TV L+ ++ ++ Y+IVG+ EAD++ GL+
Sbjct: 61 RIQEIEGKLSNAQVIDVTKLPKTGKVIFGVTVGLINLDNDEEVTYRIVGEDEADIKVGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S++SPIARALIGKE G+ + V PGG+ YEI V
Sbjct: 121 SVTSPIARALIGKEEGETVLVRTPGGDVEYEISSV 155
>gi|311695967|gb|ADP98840.1| protein containing prokaryotic transcription elongation factor GreA
domain [marine bacterium HP15]
Length = 153
Score = 144 bits (362), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 111/153 (72%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++++EL+ + E+RPR+I AI++AR +GDL ENAEY AA+E Q+ EGR+ E+
Sbjct: 1 MTKAGETRLREELQKLKSEDRPRVIAAIADAREHGDLKENAEYHAAREQQSFIEGRIQEI 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A+VID++T+ ++ FG TV L+ ++ ++ Y+IVG+ EAD+++G +SISSP
Sbjct: 61 EGKLSAAQVIDVTTIENTGKVIFGTTVHLLNMDTDEQVIYKIVGEDEADIKAGKLSISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARAL+GK GD++++ P G YEI QV +I
Sbjct: 121 IARALVGKSEGDVVAIRVPSGTVEYEIEQVEYI 153
>gi|317182174|dbj|BAJ59958.1| transcription elongation factor GreA [Helicobacter pylori F57]
Length = 164
Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 105/156 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II A+VID ST++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIIANAQVIDPSTLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|303256868|ref|ZP_07342882.1| transcription elongation factor GreA [Burkholderiales bacterium
1_1_47]
gi|330998883|ref|ZP_08322610.1| transcription elongation factor GreA [Parasutterella
excrementihominis YIT 11859]
gi|302860359|gb|EFL83436.1| transcription elongation factor GreA [Burkholderiales bacterium
1_1_47]
gi|329576097|gb|EGG57616.1| transcription elongation factor GreA [Parasutterella
excrementihominis YIT 11859]
Length = 157
Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 111/155 (71%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T++G ++ EL+ + ++RP +++AI+EAR GDLSENAEY AA+E Q EGR+
Sbjct: 3 IPITARGAKMLKDELQRLKTQDRPAVVQAIAEAREKGDLSENAEYDAARESQAFIEGRIL 62
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE+ I + +VID ST+ + ++ F ATV++ + +G+++ QIVG+ E+D + G +S++
Sbjct: 63 ELESKIAQFQVIDPSTLPDNGKVVFSATVTIEDVETGNRQTVQIVGNDESDTKLGRISVA 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARALIGK GD + V APGG YEI+ V +I
Sbjct: 123 SPMARALIGKSEGDEVEVQAPGGLSEYEIISVQYI 157
>gi|254516627|ref|ZP_05128686.1| GreA/GreB family elongation factor [gamma proteobacterium NOR5-3]
gi|219675050|gb|EED31417.1| GreA/GreB family elongation factor [gamma proteobacterium NOR5-3]
Length = 154
Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 109/153 (71%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G ++ EL ++ +RPRI +AI+EAR +GDL ENAEY AA+E Q+ EGR+ ++
Sbjct: 1 MTAQGEKALRAELEQLKKVDRPRISQAIAEAREHGDLKENAEYHAAREQQSFAEGRIMDI 60
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A+VID++++ ++ FG TV L+ + + Y+IVGD EAD + L+S++SP
Sbjct: 61 EGKLSHAQVIDVTSIPCTGKVIFGVTVDLINVENDESVVYRIVGDDEADARQNLISVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARALIGKE GD++ V APGG++ YEI QV +
Sbjct: 121 IARALIGKEEGDVVVVRAPGGDREYEIDQVRHL 153
>gi|90409512|ref|ZP_01217553.1| transcription elongation factor greA (transcript cleavage factor)
[Psychromonas sp. CNPT3]
gi|90309381|gb|EAS37625.1| transcription elongation factor greA (transcript cleavage factor)
[Psychromonas sp. CNPT3]
Length = 159
Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 108/154 (70%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T+ G +++EL + E RPRI+ AI+EAR +GDL ENAEY AA+E Q EGR+ +
Sbjct: 5 PMTATGAAALRKELERLKNETRPRIVAAIAEAREHGDLKENAEYHAAREQQGFCEGRIQD 64
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E ++ A++IDI+ ++ + R+ FG TV++V + ++ Y+IVGD E+D++ L+S++S
Sbjct: 65 IEAKLSHAQIIDINKLANNGRVIFGTTVTIVNVETDEEVTYKIVGDDESDIKLNLISVNS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
PIAR LIGK + D +++ PGG YEI+ V +I
Sbjct: 125 PIARGLIGKMVDDELTIQTPGGAIEYEIINVQYI 158
>gi|296272431|ref|YP_003655062.1| GreA/GreB family elongation factor [Arcobacter nitrofigilis DSM
7299]
gi|296096605|gb|ADG92555.1| GreA/GreB family elongation factor [Arcobacter nitrofigilis DSM
7299]
Length = 161
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 107/156 (68%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T+ G+ KI EL + + ERP + A+ EAR GDL ENAEY AAKE L +
Sbjct: 1 MEKEPMTNVGYKKITGELDFLKSHERPETVIALEEARQLGDLKENAEYHAAKEKLKLIDV 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AEL ++++A +ID S++ DR++FG+TV LV ++ ++ Y IVG E++ + G++S
Sbjct: 61 QIAELGAVLSKAVIIDPSSLPHDRVSFGSTVKLVNTDTDEEYEYSIVGGVESNAEKGMIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SP+A+ L+GKE GD S PGG KT+E+L+V +
Sbjct: 121 FNSPLAKQLMGKEEGDEFSATLPGGVKTFEVLEVFY 156
>gi|256823598|ref|YP_003147561.1| transcription elongation factor GreA [Kangiella koreensis DSM
16069]
gi|256797137|gb|ACV27793.1| transcription elongation factor GreA [Kangiella koreensis DSM
16069]
Length = 160
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/160 (43%), Positives = 115/160 (71%), Gaps = 3/160 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++++P+T +G + +Q EL ++ +RP+++ AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNRVPMTVEGAEALQTELNELKKVKRPQVVAAIAEAREHGDLKENAEYHAAREQQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLV--EKNSGDKKNYQIVGDQEADVQSG 118
R+ E+E ++ ++++D++ +S + ++ FG+TV L+ + N+ D+ Y+IVGD EAD++
Sbjct: 61 RIQEIEAKLSNSQIVDVTKISNNGKVIFGSTVILINMDDNNADEVQYKIVGDDEADIKKN 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SI+SPIAR LIGKE GDI ++ P G YEI +VL++
Sbjct: 121 KLSINSPIARGLIGKEEGDIANIQTPKGSVEYEIAEVLYL 160
>gi|255004667|ref|ZP_05279468.1| transcription elongation factor greA (greA) [Anaplasma marginale
str. Virginia]
Length = 172
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 110/160 (68%), Gaps = 6/160 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +GF K++ EL + E RP+IIK+IS+AR GDLSENAEY AA+E Q L E ++
Sbjct: 14 RFPITRRGFQKLEAELEALKSE-RPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 72
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLV----EKNSGDKKNYQIVGDQEADVQSGL 119
ELE+ +RAEVID+S +SGD + FGATV++ + +S YQIVG+ EADV +
Sbjct: 73 MELESKRSRAEVIDVSELSGDTVMFGATVTVSVYDEQTDSTGVMQYQIVGEYEADVSKNM 132
Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158
+SI SP+ +L+G+ GD + V P G+ K Y+I+++ ++
Sbjct: 133 ISIKSPLVLSLLGRREGDSVEVKTPRGDYKIYQIMKIEFV 172
>gi|56417186|ref|YP_154260.1| transcription elongation factor greA [Anaplasma marginale str. St.
Maries]
gi|222475551|ref|YP_002563968.1| transcription elongation factor greA (greA) [Anaplasma marginale
str. Florida]
gi|254995354|ref|ZP_05277544.1| transcription elongation factor greA (greA) [Anaplasma marginale
str. Mississippi]
gi|255003541|ref|ZP_05278505.1| transcription elongation factor greA (greA) [Anaplasma marginale
str. Puerto Rico]
gi|56388418|gb|AAV87005.1| transcription elongation factor greA [Anaplasma marginale str. St.
Maries]
gi|222419689|gb|ACM49712.1| transcription elongation factor greA (greA) [Anaplasma marginale
str. Florida]
Length = 174
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 110/160 (68%), Gaps = 6/160 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +GF K++ EL + E RP+IIK+IS+AR GDLSENAEY AA+E Q L E ++
Sbjct: 16 RFPITRRGFQKLEAELEALKSE-RPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 74
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLV----EKNSGDKKNYQIVGDQEADVQSGL 119
ELE+ +RAEVID+S +SGD + FGATV++ + +S YQIVG+ EADV +
Sbjct: 75 MELESKRSRAEVIDVSELSGDTVMFGATVTVSVYDEQTDSTGVMQYQIVGEYEADVSKNM 134
Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158
+SI SP+ +L+G+ GD + V P G+ K Y+I+++ ++
Sbjct: 135 ISIKSPLVLSLLGRREGDSVEVKTPRGDYKIYQIMKIEFV 174
>gi|218885487|ref|YP_002434808.1| transcription elongation factor GreA [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|226737010|sp|B8DJL8|GREA_DESVM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|218756441|gb|ACL07340.1| transcription elongation factor GreA [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 160
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 109/153 (71%), Gaps = 1/153 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP++++G+D++ +EL R + ERP II+AI EAR GDL ENA Y AA+E Q + E R++
Sbjct: 4 IPISTEGYDRLMKELE-RLKSERPAIIQAIKEAREEGDLKENAGYDAARERQGMLEARIS 62
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E+ + + VI++ ++SGD++ FGATV + + +SG+ K Y ++G EAD G +S+ S
Sbjct: 63 YIESRMAQFNVINLDSLSGDKVMFGATVEIEDLDSGEAKRYTLLGPDEADYAQGTISVLS 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL+GKE GD I V+AP G +YEI+ V +
Sbjct: 123 PVARALLGKEEGDEIVVDAPRGRISYEIISVAF 155
>gi|170765496|ref|ZP_02900307.1| transcription elongation factor GreA [Escherichia albertii TW07627]
gi|170124642|gb|EDS93573.1| transcription elongation factor GreA [Escherichia albertii TW07627]
Length = 158
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 104/143 (72%), Gaps = 1/143 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SPIAR LIGKE D++ + PGG
Sbjct: 124 SPIARGLIGKEEDDVVVIKTPGG 146
>gi|15640654|ref|NP_230283.1| transcription elongation factor GreA [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121730110|ref|ZP_01682511.1| transcription elongation factor GreA [Vibrio cholerae V52]
gi|147675665|ref|YP_001216128.1| transcription elongation factor GreA [Vibrio cholerae O395]
gi|153217134|ref|ZP_01950898.1| transcription elongation factor GreA [Vibrio cholerae 1587]
gi|153801763|ref|ZP_01956349.1| transcription elongation factor GreA [Vibrio cholerae MZO-3]
gi|153823554|ref|ZP_01976221.1| transcription elongation factor GreA [Vibrio cholerae B33]
gi|153827690|ref|ZP_01980357.1| transcription elongation factor GreA [Vibrio cholerae MZO-2]
gi|153830955|ref|ZP_01983622.1| transcription elongation factor GreA [Vibrio cholerae 623-39]
gi|227080815|ref|YP_002809366.1| transcription elongation factor GreA [Vibrio cholerae M66-2]
gi|229505744|ref|ZP_04395254.1| transcription elongation factor GreA [Vibrio cholerae BX 330286]
gi|229509223|ref|ZP_04398708.1| transcription elongation factor GreA [Vibrio cholerae B33]
gi|229512896|ref|ZP_04402363.1| transcription elongation factor GreA [Vibrio cholerae TMA 21]
gi|229519568|ref|ZP_04409011.1| transcription elongation factor GreA [Vibrio cholerae RC9]
gi|229520925|ref|ZP_04410347.1| transcription elongation factor GreA [Vibrio cholerae TM 11079-80]
gi|229530439|ref|ZP_04419827.1| transcription elongation factor GreA [Vibrio cholerae 12129(1)]
gi|229608855|ref|YP_002879503.1| transcription elongation factor GreA [Vibrio cholerae MJ-1236]
gi|254292200|ref|ZP_04962968.1| transcription elongation factor GreA [Vibrio cholerae AM-19226]
gi|297580760|ref|ZP_06942686.1| transcription elongation factor GreA [Vibrio cholerae RC385]
gi|298500750|ref|ZP_07010553.1| transcription elongation factor GreA [Vibrio cholerae MAK 757]
gi|9655069|gb|AAF93800.1| transcription elongation factor GreA [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121628145|gb|EAX60677.1| transcription elongation factor GreA [Vibrio cholerae V52]
gi|124113827|gb|EAY32647.1| transcription elongation factor GreA [Vibrio cholerae 1587]
gi|124122728|gb|EAY41471.1| transcription elongation factor GreA [Vibrio cholerae MZO-3]
gi|126518923|gb|EAZ76146.1| transcription elongation factor GreA [Vibrio cholerae B33]
gi|146317548|gb|ABQ22087.1| transcription elongation factor GreA [Vibrio cholerae O395]
gi|148873568|gb|EDL71703.1| transcription elongation factor GreA [Vibrio cholerae 623-39]
gi|149737832|gb|EDM52737.1| transcription elongation factor GreA [Vibrio cholerae MZO-2]
gi|150421881|gb|EDN13860.1| transcription elongation factor GreA [Vibrio cholerae AM-19226]
gi|227008703|gb|ACP04915.1| transcription elongation factor GreA [Vibrio cholerae M66-2]
gi|227012459|gb|ACP08669.1| transcription elongation factor GreA [Vibrio cholerae O395]
gi|229332212|gb|EEN97700.1| transcription elongation factor GreA [Vibrio cholerae 12129(1)]
gi|229342158|gb|EEO07154.1| transcription elongation factor GreA [Vibrio cholerae TM 11079-80]
gi|229344257|gb|EEO09232.1| transcription elongation factor GreA [Vibrio cholerae RC9]
gi|229350145|gb|EEO15098.1| transcription elongation factor GreA [Vibrio cholerae TMA 21]
gi|229353795|gb|EEO18731.1| transcription elongation factor GreA [Vibrio cholerae B33]
gi|229357967|gb|EEO22884.1| transcription elongation factor GreA [Vibrio cholerae BX 330286]
gi|229371510|gb|ACQ61933.1| transcription elongation factor GreA [Vibrio cholerae MJ-1236]
gi|297535176|gb|EFH74011.1| transcription elongation factor GreA [Vibrio cholerae RC385]
gi|297540531|gb|EFH76589.1| transcription elongation factor GreA [Vibrio cholerae MAK 757]
Length = 158
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/159 (46%), Positives = 118/159 (74%), Gaps = 2/159 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MMEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICE 59
Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
++ ++E ++ A+VID++ M + ++ FGATV++++ NS ++K YQIVGD EAD++SG
Sbjct: 60 AQIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGR 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIAR LIGK GD +S+ PGG K +EI +V ++
Sbjct: 120 ISVNSPIARGLIGKFEGDEVSIATPGGNKVFEIDRVEYL 158
>gi|190571574|ref|YP_001975932.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
gi|213018976|ref|ZP_03334783.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
gi|190357846|emb|CAQ55302.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
gi|212995085|gb|EEB55726.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
Length = 164
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 75/160 (46%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+V+K P+T +GF+ +Q EL + +EE+P II+AIS+AR GDLSENAEY AA+E + E
Sbjct: 5 IVNKFPITREGFESMQVELE-KLKEEKPSIIQAISDARDQGDLSENAEYHAARERLSFIE 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVS---LVEKNSGDKKNYQIVGDQEADVQS 117
GR+ E+E+ ++ AEVI++ +SGD + FGATV+ L + NS + Y+IVG EAD
Sbjct: 64 GRIIEVESKLSHAEVIEVKNLSGDTVMFGATVTVSMLGDDNSEIEYVYKIVGGYEADASK 123
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
L+S SP+ ALIGK++G+ + V P GEK Y+I+++ +
Sbjct: 124 QLISTDSPLGSALIGKKVGEYVEVIVPNGEKLYKIVKIEF 163
>gi|157736870|ref|YP_001489553.1| transcription elongation factor GreA [Arcobacter butzleri RM4018]
gi|315636041|ref|ZP_07891300.1| transcription elongation factor GreA [Arcobacter butzleri JV22]
gi|166987609|sp|A8ESG0|GREA_ARCB4 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|157698724|gb|ABV66884.1| transcription elongation factor GreA [Arcobacter butzleri RM4018]
gi|315479697|gb|EFU70371.1| transcription elongation factor GreA [Arcobacter butzleri JV22]
Length = 161
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 109/156 (69%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T G++K+ EL + ++ ERP + A+ EAR GDL ENAEY +AKE L +
Sbjct: 1 MEKEPMTLAGYNKVTAELDFLKKTERPETVIALDEARQLGDLKENAEYHSAKEKLKLIDI 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AEL +I++A +ID +T+ DR++FG+T+ LV+ ++ ++ Y IVG E+ + G++S
Sbjct: 61 QIAELNAVISKAVIIDPTTLPHDRVSFGSTIDLVDVDTDEEFTYTIVGGVESSAEKGMIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SP+A+ L+GKE GD ++ PGG KT+EIL+V +
Sbjct: 121 FNSPLAKQLMGKEAGDELNATLPGGAKTFEILKVYY 156
>gi|269958421|ref|YP_003328208.1| transcription elongation factor GreA [Anaplasma centrale str.
Israel]
gi|269848250|gb|ACZ48894.1| transcription elongation factor GreA [Anaplasma centrale str.
Israel]
Length = 166
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/160 (45%), Positives = 111/160 (69%), Gaps = 6/160 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +GF K++ EL + E RP+IIK+IS+AR GDLSENAEY AA+E Q L E ++
Sbjct: 8 RFPITRRGFQKLEAELEALKSE-RPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 66
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLV----EKNSGDKKNYQIVGDQEADVQSGL 119
ELE+ +RAEVID+S +SGD + FGATV++ + +S YQIVG+ EAD+ +
Sbjct: 67 MELESKRSRAEVIDVSELSGDTVMFGATVTVSVYDEQADSTGIMRYQIVGEYEADISKNM 126
Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158
+SI SP+ +L+G++ GD + V P G+ K Y+I+++ ++
Sbjct: 127 ISIKSPLVLSLLGRKEGDTVEVKTPRGDYKIYQIIKIEFV 166
>gi|157962891|ref|YP_001502925.1| transcription elongation factor GreA [Shewanella pealeana ATCC
700345]
gi|157847891|gb|ABV88390.1| transcription elongation factor GreA [Shewanella pealeana ATCC
700345]
Length = 158
Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 111/155 (71%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+P+T G ++++EL + E RP+I +AI EAR GDL ENAEY AA+E Q L E R+
Sbjct: 4 VPMTIVGAAQLRKELDHLKFERRPKIAEAIGEARELGDLKENAEYHAAREEQGLCEARVR 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A++ID++TM+ + R+ FG+TV++V ++ ++ Y+IVG+ EA+++ L+S+S
Sbjct: 64 DIEGKLSHAQIIDVTTMANNGRVIFGSTVTIVNVDTDEEVTYRIVGEDEANIRENLLSVS 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGK L D IS+ PGG +EI++V +I
Sbjct: 124 SPIARGLIGKSLDDEISIVTPGGTNDFEIIKVEYI 158
>gi|254797022|ref|YP_003081859.1| transcription elongation factor GreA [Neorickettsia risticii str.
Illinois]
gi|254590253|gb|ACT69615.1| transcription elongation factor GreA [Neorickettsia risticii str.
Illinois]
Length = 157
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/154 (43%), Positives = 111/154 (72%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T +G+ K+Q+EL + +P +I A+++AR GDLSENAEY A++ Q+ EG++
Sbjct: 3 KLPITREGYCKLQEELEKLVKVVKPSVIAAVAQARELGDLSENAEYHEARKEQSFVEGKI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
EL+ ++ AEVID+S +G+R+ FGA+V+L + YQIVG+ E+D++ G +S+S
Sbjct: 63 RELQLHLSEAEVIDVSQFTGERVKFGASVTLENMENESVLVYQIVGNLESDIKEGKISVS 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPI +A++ KE+G+I+ ++ P G+KTY+IL V +
Sbjct: 123 SPIGKAVMNKEVGEIVEIDLPSGKKTYKILGVEF 156
>gi|32034024|ref|ZP_00134268.1| COG0782: Transcription elongation factor [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208420|ref|YP_001053645.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae L20]
gi|165976363|ref|YP_001651956.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|303252987|ref|ZP_07339142.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307245856|ref|ZP_07527941.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307247932|ref|ZP_07529966.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307250188|ref|ZP_07532146.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307254829|ref|ZP_07536655.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307259271|ref|ZP_07541000.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307261432|ref|ZP_07543105.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|126097212|gb|ABN74040.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165876464|gb|ABY69512.1| transcription elongation factor [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|302648178|gb|EFL78379.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|306853216|gb|EFM85436.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306855582|gb|EFM87751.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306857787|gb|EFM89885.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306862200|gb|EFM94168.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306866638|gb|EFM98497.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306868889|gb|EFN00693.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 158
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + A++ID++ M+ + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+S+
Sbjct: 63 QEIEGKLGNAQIIDVTKMANNGKVIFGATVSLVNADTDEEVTYRIVGDDEANIKEGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I
Sbjct: 123 NSPIARGLVGKEVDDSVSIVTPGGKVEFDIINVEYI 158
>gi|71278345|ref|YP_270131.1| transcription elongation factor GreA [Colwellia psychrerythraea
34H]
gi|71144085|gb|AAZ24558.1| transcription elongation factor GreA [Colwellia psychrerythraea
34H]
Length = 158
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G D + EL+ + E+RPRI+K I+ AR +GDL ENAEY AAKE Q EGR+
Sbjct: 3 KYPMTLRGSDLLHDELKILKTEKRPRIVKDIATAREHGDLKENAEYHAAKEEQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A+VID++ + ++ FG TV+L+ ++ + YQIVGD EAD ++G +S+
Sbjct: 63 QDIEGRLCNAQVIDVTAIPNHGKVIFGTTVTLLNLDTEVEVTYQIVGDDEADFKTGRISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGKE+ I + PGG YEI+ V I
Sbjct: 123 NSPIARGLIGKEVDSEIEITIPGGVVEYEIVSVEHI 158
>gi|317177306|dbj|BAJ55095.1| transcription elongation factor GreA [Helicobacter pylori F16]
Length = 164
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II A+VID S ++ ++++FG+T+ ++ + + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIIANAQVIDPSALAHNKVSFGSTIKILNLGNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SSPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FSSPIAKSLIGKSKGDSVSIQLPNGESDFEILDIYY 156
>gi|224370120|ref|YP_002604284.1| GreA1 [Desulfobacterium autotrophicum HRM2]
gi|223692837|gb|ACN16120.1| GreA1 [Desulfobacterium autotrophicum HRM2]
Length = 175
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 111/156 (71%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++D+IP+T +G+ +++EL+ + ERP+ IKAI ARA+GDLSENAE+ AAK+ Q+ E
Sbjct: 20 ILDQIPITIEGYAALKEELQRLKTIERPQNIKAIEIARAHGDLSENAEFDAAKDRQSFIE 79
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL I A++ID +T+S D + F + V + +SG++ Y IVG +E+D+ G +
Sbjct: 80 GRIGELGYKIASAKIIDPATVSKDCVRFASRVVIENLDSGEEVEYMIVGQEESDIHKGKI 139
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+SSP+ AL+GK+ GD I + APGG++ YEI+ +L
Sbjct: 140 SVSSPLGMALLGKQPGDEIVIQAPGGKRNYEIVDIL 175
>gi|148553363|ref|YP_001260945.1| transcription elongation factor GreA [Sphingomonas wittichii RW1]
gi|229485908|sp|A5V3E1|GREA_SPHWW RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|148498553|gb|ABQ66807.1| transcription elongation factor GreA [Sphingomonas wittichii RW1]
Length = 158
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/157 (47%), Positives = 112/157 (71%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+ ++G + +EL R + ERP II AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 IEKLPMLAEGQKMLTEEL-ARLKAERPLIIDAIEEARAHGDLSENAEYHAAKERQGQIEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+A++E+ ++RA+VID S +SGD+I FGATV+L++ + + YQIVG EAD ++G +S
Sbjct: 63 SIADIEDRLSRAQVIDPSMLSGDKIVFGATVTLLDDDEKPVR-YQIVGQTEADAKTGKIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ RALIGK++ D + V P G++ Y + ++ +I
Sbjct: 122 YNSPLGRALIGKKVDDEVEVTVPSGDRFYLVSKIEFI 158
>gi|190150271|ref|YP_001968796.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303251385|ref|ZP_07337562.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307252570|ref|ZP_07534465.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307256998|ref|ZP_07538774.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307263610|ref|ZP_07545224.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189915402|gb|ACE61654.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302649739|gb|EFL79918.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306859975|gb|EFM91993.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306864482|gb|EFM96389.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306871073|gb|EFN02803.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 158
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + A++ID++ M+ + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+S+
Sbjct: 63 QEIEGKLGNAQIIDVTKMTNNGKVIFGATVSLVNADTEEEVTYRIVGDDEANIKEGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I
Sbjct: 123 NSPIARGLVGKEVDDSVSIVTPGGKVEFDIINVEYI 158
>gi|323492033|ref|ZP_08097198.1| transcription elongation factor GreA [Vibrio brasiliensis LMG
20546]
gi|323313762|gb|EGA66861.1| transcription elongation factor GreA [Vibrio brasiliensis LMG
20546]
Length = 157
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 116/158 (73%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K+++EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQKLREELE-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD + ++ PGGE+ +EI V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGERDFEIDSVEYI 157
>gi|308184650|ref|YP_003928783.1| transcription elongation factor GreA [Helicobacter pylori SJM180]
gi|308060570|gb|ADO02466.1| transcription elongation factor GreA [Helicobacter pylori SJM180]
gi|317014274|gb|ADU81710.1| transcription elongation factor GreA [Helicobacter pylori
Gambia94/24]
Length = 164
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 105/156 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIISNAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|317011079|gb|ADU84826.1| transcription elongation factor GreA [Helicobacter pylori
SouthAfrica7]
Length = 164
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II+ A+VID S ++ +++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIISNAQVIDPSVLTHHKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|188527289|ref|YP_001909976.1| transcription elongation factor GreA [Helicobacter pylori Shi470]
gi|238691911|sp|B2USW4|GREA_HELPS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|188143529|gb|ACD47946.1| transcription elongation factor GreA [Helicobacter pylori Shi470]
gi|308062190|gb|ADO04078.1| transcription elongation factor GreA [Helicobacter pylori Cuz20]
Length = 164
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIIANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPSKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|21672645|ref|NP_660712.1| transcription elongation factor GreA [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008517|sp|Q8K9G6|GREA_BUCAP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|21623280|gb|AAM67923.1| transcription elongation factor GreA [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 159
Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 111/159 (69%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++ IP+T +G +K+++EL + +RPRI I+EAR +GDL ENAEY +A+E Q+ E
Sbjct: 1 MINLIPMTVRGAEKLREELEQLKNVKRPRITVQIAEARKHGDLKENAEYHSAREEQSFCE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E+ ++ +++IDI+ +S D R+ FG+TV+++ + YQIVGD E+D + L
Sbjct: 61 GRIQEIESKLSNSQIIDITKISNDGRVVFGSTVTILNIKNNAVFTYQIVGDDESDFKKNL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SI+SP++R LIGK + I ++ P G Y+IL++ +I
Sbjct: 121 ISINSPMSRGLIGKTVNTIAIIHTPSGNVKYKILKIDYI 159
>gi|254787219|ref|YP_003074648.1| GreA/GreB family elongation factor [Teredinibacter turnerae T7901]
gi|237686435|gb|ACR13699.1| GreA/GreB family elongation factor [Teredinibacter turnerae T7901]
Length = 158
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++EL ++ +RP+I AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 KYPMTVEGEKALREELDHLKKVQRPKITAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A+VIDIS M G+++ FG TV L+ + ++ +Y+IVG+ EA+++ +S+
Sbjct: 63 QDIEAKLSNAQVIDISKMPVGEKVIFGVTVRLINVETDEEISYKIVGEDEANLKLNKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIARAL+GKE+GD+ V APGG+ YEI V I
Sbjct: 123 TSPIARALVGKEVGDVALVKAPGGDIEYEIDAVSHI 158
>gi|332140822|ref|YP_004426560.1| Transcription elongation factor GreA [Alteromonas macleodii str.
'Deep ecotype']
gi|327550844|gb|AEA97562.1| Transcription elongation factor GreA [Alteromonas macleodii str.
'Deep ecotype']
Length = 153
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 109/153 (71%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G ++ EL + + RPRII++I+EAR +GDL ENAEY AA+E Q+ EGR+ ++
Sbjct: 1 MTARGAQMLRDELNELKTKTRPRIIESIAEAREHGDLKENAEYHAAREQQSFCEGRIQDI 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A++ID++ M ++ FG TV+++ +S ++ Y+IVGD EAD+++ L+S++SP
Sbjct: 61 EGKLSNAQIIDVTKMENTGKVIFGTTVTILNVDSDEETTYRIVGDDEADIKNNLISVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGKEL D +++ P G EI++V +I
Sbjct: 121 IARGLIGKELDDTVTIQTPSGTVEVEIIEVEYI 153
>gi|323495923|ref|ZP_08100991.1| transcription elongation factor GreA [Vibrio sinaloensis DSM 21326]
gi|323319139|gb|EGA72082.1| transcription elongation factor GreA [Vibrio sinaloensis DSM 21326]
Length = 157
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 116/158 (73%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K+++EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQKLREELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD + ++ PGGE+ +EI V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGERDFEIDSVEYI 157
>gi|254508242|ref|ZP_05120366.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Vibrio parahaemolyticus 16]
gi|219548859|gb|EED25860.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Vibrio parahaemolyticus 16]
Length = 157
Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 118/158 (74%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G ++++EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGEKQLREELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDVDTDEEKRYQIVGDDEADIKSGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD ++++ PGG++ +EI +V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVAISTPGGDRDFEIDRVEYI 157
>gi|46581647|ref|YP_012455.1| transcription elongation factor GreA [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601195|ref|YP_965595.1| transcription elongation factor GreA [Desulfovibrio vulgaris DP4]
gi|81566039|sp|Q725M4|GREA_DESVH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166200661|sp|A1V9Q2|GREA_DESVV RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|46451070|gb|AAS97715.1| transcription elongation factor GreA [Desulfovibrio vulgaris str.
Hildenborough]
gi|120561424|gb|ABM27168.1| transcription elongation factor GreA [Desulfovibrio vulgaris DP4]
gi|311235288|gb|ADP88142.1| GreA/GreB family elongation factor [Desulfovibrio vulgaris RCH1]
Length = 163
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 110/154 (71%), Gaps = 1/154 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP++ +GF ++++EL R ++ERP +I+AI EAR GDLSENA Y AA+E Q + E R+
Sbjct: 4 IPISVEGFKQLEKELD-RLKKERPGVIQAIKEAREEGDLSENAGYDAARERQGMLEARIK 62
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E+ + + VID+ T+SGD++ FGATV + + SG++K Y ++G EAD G +S+ S
Sbjct: 63 YIESRMAQFNVIDLDTISGDKVMFGATVKIEDLESGEEKEYTLLGPDEADYAKGSISVQS 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARA++GKE GD I V+AP G+ YEI+ + ++
Sbjct: 123 PVARAMLGKEEGDEIVVDAPRGKIHYEIVSIRFL 156
>gi|301061737|ref|ZP_07202478.1| transcription elongation factor GreA [delta proteobacterium NaphS2]
gi|300444197|gb|EFK08221.1| transcription elongation factor GreA [delta proteobacterium NaphS2]
Length = 155
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 107/154 (69%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G +K++ EL + ++ E+P I+AI+EARA+GDLSENAEY AAKE Q L
Sbjct: 1 MEKMPITKDGLEKLKSELVYLEKTEKPNNIQAIAEARAHGDLSENAEYHAAKEKQGLIAA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ EL+N I +AE+ID++ DR+ FG TV L + + + YQ+VG E+D ++G +S
Sbjct: 61 KINELQNAIGQAEIIDVNDGPMDRVVFGRTVLLYDIQNDKEITYQLVGPYESDPENGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
I SP+ R LIG+E+GD + + P G +E+L++
Sbjct: 121 IKSPLGRGLIGREIGDEVKIKTPRGVLEFEVLEI 154
>gi|213027547|ref|ZP_03341994.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 145
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 66/145 (45%), Positives = 105/145 (72%), Gaps = 1/145 (0%)
Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ ++E ++ A+
Sbjct: 1 MREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQ 60
Query: 75 VIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGK
Sbjct: 61 VIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGK 120
Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158
E D++ + PGG+ YE+L+V ++
Sbjct: 121 EQDDVVVIKTPGGDVEYEVLKVEYL 145
>gi|322380197|ref|ZP_08054428.1| transcription elongation factor GreA [Helicobacter suis HS5]
gi|321147363|gb|EFX42032.1| transcription elongation factor GreA [Helicobacter suis HS5]
Length = 161
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 104/154 (67%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E R+
Sbjct: 2 KEPMSAYGYEKICAELKRLKEIERPEIVKEIDRAREHGDLKENAEYHAAKEKQAFIEARI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+L I+ A+VID ST+S +++FG+TV +++ N+ + +Y IVG E+D GL+S
Sbjct: 62 NDLSRILANAQVIDPSTLSHQKVSFGSTVRILDLNNDKEFSYTIVGSMESDPSRGLISFG 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A++L+GK GD ++V P GE +EIL + +
Sbjct: 122 SPVAKSLMGKSKGDEVTVLLPSGESEFEILDICY 155
>gi|308063340|gb|ADO05227.1| transcription elongation factor GreA [Helicobacter pylori Sat464]
Length = 164
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIIANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|326796869|ref|YP_004314689.1| transcription elongation factor GreA [Marinomonas mediterranea
MMB-1]
gi|326547633|gb|ADZ92853.1| transcription elongation factor GreA [Marinomonas mediterranea
MMB-1]
Length = 158
Score = 141 bits (356), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T +G ++++EL + RPR+I I+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 KVPMTLEGESRLREELNHLKSVVRPRVIADIAEAREHGDLKENAEYHAAREEQGFTEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + ++VIDI +M ++ FGATV+L ++ + YQIVGD EADV+ +S
Sbjct: 63 KEIEGKLADSQVIDIKSMPHTGKVIFGATVTLYNVDTEETVTYQIVGDDEADVKQKKISY 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIA+A+IGK D IS+N P GE YEI +V +I
Sbjct: 123 ASPIAKAIIGKHEEDEISINVPSGEVVYEIEKVEYI 158
>gi|261837908|gb|ACX97674.1| transcription elongation factor [Helicobacter pylori 51]
gi|317180628|dbj|BAJ58414.1| transcription elongation factor GreA [Helicobacter pylori F32]
gi|332673330|gb|AEE70147.1| transcription elongation factor GreA [Helicobacter pylori 83]
Length = 164
Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIIANAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|239995761|ref|ZP_04716285.1| Transcription elongation factor GreA [Alteromonas macleodii ATCC
27126]
Length = 153
Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 110/153 (71%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G ++ EL + + RPRII++I+EAR +GDL ENAEY AA+E Q+ EGR+ ++
Sbjct: 1 MTARGAQMLRDELNELKTKTRPRIIESIAEAREHGDLKENAEYHAAREQQSFCEGRIQDI 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A++ID++ M ++ FG TV+++ ++ ++ Y+IVGD EAD+++ L+S++SP
Sbjct: 61 EGKLSNAQIIDVTKMENTGKVIFGTTVTILNVDTDEETTYRIVGDDEADIKNNLISVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGKEL D++++ P G EI++V +I
Sbjct: 121 IARGLIGKELDDMVTIQTPAGAVEVEIIEVEYI 153
>gi|127513765|ref|YP_001094962.1| transcription elongation factor GreA [Shewanella loihica PV-4]
gi|126639060|gb|ABO24703.1| transcription elongation factor GreA [Shewanella loihica PV-4]
Length = 158
Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G +++++EL + + E+RP+I +AI AR GDL ENAEY AA+E Q L E
Sbjct: 1 MNKVPMTVVGANQLREELDFLKFEKRPKIAEAIGIARELGDLKENAEYHAAREEQGLCEA 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++ M R+ FG TV+++ +S ++ Y+IVG+ EAD+++ L+
Sbjct: 61 RVRDIEGKLSHAQIIDVTKMENTGRVIFGTTVTILNLDSDEEFTYRIVGEDEADIKANLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK GD +S+ PGG YEI V +I
Sbjct: 121 SVTSPIARGLVGKSEGDEVSIQTPGGMTDYEITAVEYI 158
>gi|332993759|gb|AEF03814.1| transcription elongation factor GreA [Alteromonas sp. SN2]
Length = 158
Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 108/154 (70%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T+ G ++ EL + + RPRII++I+EAR +GDL ENAEY AA+E Q+ EGR+ +
Sbjct: 5 PMTAHGAQLLRDELNELKTKTRPRIIQSIAEAREHGDLKENAEYHAAREQQSFCEGRIQD 64
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E ++ A++ID++ M ++ FG TV+++ ++ ++ Y+IVGD EAD++ +S++S
Sbjct: 65 IEGKLSNAQIIDVTKMENKGKVIFGTTVTILNVDTDEETTYRIVGDDEADIKQNRISVNS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
PIAR LIGKEL D++++ P G EI++V +I
Sbjct: 125 PIARGLIGKELDDMVTIQTPAGSVEVEIIEVQYI 158
>gi|108563274|ref|YP_627590.1| transcription elongation factor GreA [Helicobacter pylori HPAG1]
gi|207092077|ref|ZP_03239864.1| transcription elongation factor GreA [Helicobacter pylori
HPKX_438_AG0C1]
gi|208434775|ref|YP_002266441.1| transcription elongation factor [Helicobacter pylori G27]
gi|210135059|ref|YP_002301498.1| transcription elongation factor GreA [Helicobacter pylori P12]
gi|123373738|sp|Q1CT06|GREA_HELPH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238058234|sp|B6JM90|GREA_HELP2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238058235|sp|B5Z7M6|GREA_HELPG RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|107837047|gb|ABF84916.1| transcription elongation factor [Helicobacter pylori HPAG1]
gi|208432704|gb|ACI27575.1| transcription elongation factor [Helicobacter pylori G27]
gi|210133027|gb|ACJ08018.1| transcription elongation factor [Helicobacter pylori P12]
gi|317009127|gb|ADU79707.1| transcription elongation factor GreA [Helicobacter pylori India7]
gi|317012671|gb|ADU83279.1| transcription elongation factor GreA [Helicobacter pylori
Lithuania75]
Length = 164
Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|322379587|ref|ZP_08053924.1| transcription elongation factor GreA [Helicobacter suis HS1]
gi|321147981|gb|EFX42544.1| transcription elongation factor GreA [Helicobacter suis HS1]
Length = 161
Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/154 (44%), Positives = 104/154 (67%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E R+
Sbjct: 2 KEPMSAYGYEKICAELKRLKEIERPEIVKEIDRAREHGDLKENAEYHAAKEKQVFIEARI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+L I+ A+VID ST+S +++FG+TV +++ N+ + +Y IVG E+D GL+S
Sbjct: 62 NDLSRILANAQVIDPSTLSHQKVSFGSTVRILDLNNDKEFSYTIVGSMESDPSRGLISFG 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A++L+GK GD ++V P GE +EIL + +
Sbjct: 122 SPVAKSLMGKSKGDEVTVLLPSGESEFEILDICY 155
>gi|217034498|ref|ZP_03439909.1| hypothetical protein HP9810_873g14 [Helicobacter pylori 98-10]
gi|216943039|gb|EEC22518.1| hypothetical protein HP9810_873g14 [Helicobacter pylori 98-10]
gi|315586469|gb|ADU40850.1| transcription elongation factor GreA [Helicobacter pylori 35A]
gi|317178776|dbj|BAJ56564.1| transcription elongation factor GreA [Helicobacter pylori F30]
Length = 164
Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIIANAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDSVSIQLPNGESDFEILDIYY 156
>gi|15611867|ref|NP_223518.1| transcription elongation factor GreA [Helicobacter pylori J99]
gi|15645485|ref|NP_207660.1| transcription elongation factor GreA [Helicobacter pylori 26695]
gi|254779167|ref|YP_003057272.1| transcription elongation factor GreA [Helicobacter pylori B38]
gi|54037216|sp|P64276|GREA_HELPJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54041324|sp|P64275|GREA_HELPY RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|2313994|gb|AAD07908.1| transcription elongation factor GreA (greA) [Helicobacter pylori
26695]
gi|4155364|gb|AAD06376.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIPT CLEAVAGE FACTOR)
[Helicobacter pylori J99]
gi|254001078|emb|CAX29025.1| Transcription elongation factor GreA (Transcript cleavage factor
GreA) [Helicobacter pylori B38]
gi|261839321|gb|ACX99086.1| transcription elongation factor GreA [Helicobacter pylori 52]
Length = 164
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIVANAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|254284149|ref|ZP_04959117.1| GreA/GreB family elongation factor [gamma proteobacterium NOR51-B]
gi|219680352|gb|EED36701.1| GreA/GreB family elongation factor [gamma proteobacterium NOR51-B]
Length = 153
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G +++EL ++ +RPRI +AI+EAR +GDL ENAEY AA+E Q+ EGR+ ++
Sbjct: 1 MTAEGERALREELERLKKVDRPRITQAIAEAREHGDLKENAEYHAAREQQSFAEGRIKDI 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E+ ++ A+VID+S ++ ++ FG TV L+ + Y+IVG+ EADV++ ++S+ SP
Sbjct: 61 EHKLSHAQVIDVSAIAHTGKVIFGTTVDLINLDDDSTVTYRIVGEDEADVRNNMISVGSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARAL+GK GD + V APGG+ YEI QV +
Sbjct: 121 IARALVGKSEGDEVVVRAPGGDICYEIDQVRHV 153
>gi|221134941|ref|ZP_03561244.1| transcription elongation factor GreA [Glaciecola sp. HTCC2999]
Length = 158
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/154 (42%), Positives = 108/154 (70%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T+ G + ++ EL+ + +RP II AI+EAR +GDL ENAEY AA+E Q+ EGR+ +
Sbjct: 5 PMTAHGAEMLRAELQELKSVKRPEIITAIAEAREHGDLKENAEYHAAREQQSFCEGRIQD 64
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E ++ A++ID++ M +I FG TV+L+ + D+ Y+IVGD EAD+++ L+S++S
Sbjct: 65 IEGKLSNAQIIDVTKMENTGKIIFGTTVTLINCETDDEITYKIVGDDEADIKNNLISVNS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
PIAR LIGK + D+ ++ P G +E+++V +I
Sbjct: 125 PIARGLIGKMVDDVANIQTPKGVVEFEVIEVQYI 158
>gi|119469583|ref|ZP_01612487.1| transcription elongation factor greA [Alteromonadales bacterium
TW-7]
gi|119447118|gb|EAW28388.1| transcription elongation factor greA [Alteromonadales bacterium
TW-7]
Length = 158
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G D +++EL + RP+II I++AR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTVRGADLLRKELNELKTVTRPKIIADIADAREHGDLKENAEYHAAREQQGFCEGRIQ 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ ++ID++ M ++ FG TV++V + + YQIVGD EAD+++ L+S++
Sbjct: 64 EIEAKLSNVQIIDVTKMPNTGKVIFGTTVTIVNVETDAEVKYQIVGDDEADIKNNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGK++ D +++ P G+ YEI++V ++
Sbjct: 124 SPIARGLIGKQMDDAVTIKTPKGDVEYEIIEVEYL 158
>gi|262401668|ref|ZP_06078234.1| transcription elongation factor GreA [Vibrio sp. RC586]
gi|262352085|gb|EEZ01215.1| transcription elongation factor GreA [Vibrio sp. RC586]
Length = 157
Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 118/158 (74%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++TM + ++ FGATV++++ N+ ++K YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVTTMENNGKVIFGATVTVIDVNTDEEKTYQIVGDDEADIKSGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +++ PGG K +EI +V ++
Sbjct: 120 SVNSPIARGLIGKLEGDEVAIATPGGNKDFEIDRVEYL 157
>gi|24372774|ref|NP_716816.1| transcription elongation factor GreA [Shewanella oneidensis MR-1]
gi|24346855|gb|AAN54261.1|AE015563_1 transcription elongation factor GreA [Shewanella oneidensis MR-1]
Length = 158
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T G +++++EL + E RP+I +AI+ AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KVPMTVVGAEQLRKELDMLKFERRPKITEAIASARELGDLKENAEYHAAREEQGICEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A++ID++ M + RI FGATV+++ ++ + Y+IVGD EA+++ L+S+
Sbjct: 63 RDIEGKLSNAQIIDVTKMVNNGRIIFGATVTILNLDTDAEVTYRIVGDDEANIKENLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GK GD +S+ PGG YEI+ V +I
Sbjct: 123 NSPIARGLVGKNEGDEVSITTPGGLTDYEIISVQYI 158
>gi|261212255|ref|ZP_05926541.1| transcription elongation factor GreA [Vibrio sp. RC341]
gi|260838863|gb|EEX65514.1| transcription elongation factor GreA [Vibrio sp. RC341]
Length = 157
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 117/158 (74%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++TM + ++ FGATV+L++ N+ ++K YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVTTMENNGKVIFGATVTLIDVNTDEEKTYQIVGDDEADIKSGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +++ PGG K +EI +V ++
Sbjct: 120 SVNSPIARGLIGKMEGDEVAIVTPGGNKDFEIDRVEYL 157
>gi|254850868|ref|ZP_05240218.1| transcription elongation factor GreA [Vibrio cholerae MO10]
gi|255744149|ref|ZP_05418102.1| transcription elongation factor GreA [Vibrio cholera CIRS 101]
gi|262155723|ref|ZP_06028847.1| transcription elongation factor GreA [Vibrio cholerae INDRE 91/1]
gi|262169934|ref|ZP_06037624.1| transcription elongation factor GreA [Vibrio cholerae RC27]
gi|25453014|sp|Q9KU89|GREA_VIBCH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254846573|gb|EET24987.1| transcription elongation factor GreA [Vibrio cholerae MO10]
gi|255738089|gb|EET93481.1| transcription elongation factor GreA [Vibrio cholera CIRS 101]
gi|262021668|gb|EEY40379.1| transcription elongation factor GreA [Vibrio cholerae RC27]
gi|262030434|gb|EEY49074.1| transcription elongation factor GreA [Vibrio cholerae INDRE 91/1]
gi|327483437|gb|AEA77844.1| Transcription elongation factor GreA [Vibrio cholerae LMA3894-4]
Length = 157
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 117/158 (74%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M + ++ FGATV++++ NS ++K YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +S+ PGG K +EI +V ++
Sbjct: 120 SVNSPIARGLIGKFEGDEVSIATPGGNKVFEIDRVEYL 157
>gi|295698488|ref|YP_003603143.1| transcription elongation factor [Candidatus Riesia pediculicola
USDA]
gi|291157052|gb|ADD79497.1| transcription elongation factor [Candidatus Riesia pediculicola
USDA]
Length = 162
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ ++P+T G K+++EL + + +RP II ++ EAR +GDL ENAEYQAA+E Q+ EG
Sbjct: 1 MKRVPMTLNGEKKLRKELEFLKNVKRPEIITSLIEARKHGDLKENAEYQAAREEQSFYEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A VID++ + + + FG+TV+L + S YQIVG+ EAD + L+
Sbjct: 61 RIKEIERKLLNAHVIDVTQLKEKNHVTFGSTVTLKDNISEKISIYQIVGEDEADFKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SPIA+ +IGK+ GD++ +N P G+ Y IL+V +I
Sbjct: 121 SFCSPIAKGIIGKKEGDVVKINTPNGKAIYTILEVKYI 158
>gi|119774088|ref|YP_926828.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
gi|119766588|gb|ABL99158.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
Length = 158
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G +++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E
Sbjct: 1 MNKVPMTVVGAEQLRKELDILKFDRRPKITEAIAAARELGDLKENAEYHAAREEQGICEA 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++ M+ + RI FGATV+++ ++ + Y+IVGD EA+++ L+
Sbjct: 61 RIRDIEGKLSNAQIIDVTKMANNGRIIFGATVTILNLDTDAEVTYRIVGDDEANIKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK LGD +++ P G YE+++V +I
Sbjct: 121 SVNSPIARGLVGKNLGDEVNITTPAGVTAYEVVEVQYI 158
>gi|149773197|dbj|BAF64773.1| transcription elongation factor [Shewanella livingstonensis]
Length = 204
Score = 140 bits (352), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/159 (41%), Positives = 110/159 (69%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ K+P+T G D++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E
Sbjct: 46 IMSKVPMTVVGADQLRKELELLKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICE 105
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ ++E ++ A++ID++ + R+ FG TV+++ ++ + Y+IVGD EAD++ L
Sbjct: 106 ARIRDIEGKLSNAQIIDVTKLENTGRVIFGTTVTILNIDTDAEVTYRIVGDDEADIKQNL 165
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIAR LIGK GD +S+ PGG YEI++V ++
Sbjct: 166 ISVNSPIARGLIGKSEGDEVSITTPGGLTDYEIVKVQYL 204
>gi|94265017|ref|ZP_01288786.1| Prokaryotic transcription elongation factor GreA [delta
proteobacterium MLMS-1]
gi|93454506|gb|EAT04791.1| Prokaryotic transcription elongation factor GreA [delta
proteobacterium MLMS-1]
Length = 187
Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 115/155 (74%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV++IP+T +G ++++QEL Q+++RP +I+AI AR +GDL ENAEY AAKE Q+ E
Sbjct: 29 MVERIPMTRQGHERLRQELNRLQRQDRPTVIEAIEVAREHGDLKENAEYHAAKERQSHIE 88
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL++ ++RAEVID+ + +R+ FG V LV+ ++ + +YQ++G +EADV+ G +
Sbjct: 89 GRIMELKDKLSRAEVIDVEDLDCERVVFGVVVKLVDLDTEAEVSYQMLGPEEADVEQGSI 148
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S+ SP+ RA+IGK +GD I+V PGG + +E++ +
Sbjct: 149 SVLSPLGRAMIGKSVGDEITVKTPGGVRQFEVMDI 183
>gi|89095224|ref|ZP_01168147.1| transcription elongation factor greA (transcript cleavage factor)
[Oceanospirillum sp. MED92]
gi|89080521|gb|EAR59770.1| transcription elongation factor greA (transcript cleavage factor)
[Oceanospirillum sp. MED92]
Length = 153
Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 105/153 (68%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G +++EL + +RPR+I I+EAR +GDL ENAEY AA+E Q EGR+ EL
Sbjct: 1 MTAAGEKALREELDQLKTVDRPRVIADIAEAREHGDLKENAEYHAAREQQGFIEGRIQEL 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ +VID++++ ++ FG TV+++ ++ + K YQIVGD EAD++ +S++SP
Sbjct: 61 EGKLSNCQVIDVTSIPHTGKVIFGTTVTIINLDTDETKTYQIVGDDEADIKVNKISVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR L+GKE GDI+++ PGG YEI +V I
Sbjct: 121 IARGLVGKEEGDIVNIQTPGGAAEYEIDEVAHI 153
>gi|120597887|ref|YP_962461.1| transcription elongation factor GreA [Shewanella sp. W3-18-1]
gi|146293941|ref|YP_001184365.1| transcription elongation factor GreA [Shewanella putrefaciens
CN-32]
gi|120557980|gb|ABM23907.1| transcription elongation factor GreA [Shewanella sp. W3-18-1]
gi|145565631|gb|ABP76566.1| transcription elongation factor GreA [Shewanella putrefaciens
CN-32]
gi|319427318|gb|ADV55392.1| GreA/GreB family elongation factor [Shewanella putrefaciens 200]
Length = 158
Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T G +++++EL + E RP+I +AI+ AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KVPMTVVGAEQLRKELDILKFERRPKITEAIASARELGDLKENAEYHAAREEQGICEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A++ID++ M + RI FGATV+++ ++ + Y+IVGD EA+++ L+S+
Sbjct: 63 RDIEGKLSNAQIIDVTKMVNNGRIIFGATVTILNLDTDAEVTYRIVGDDEANIKENLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GK GD +S+ PGG YEI+ V +I
Sbjct: 123 NSPIARGLVGKNEGDEVSITTPGGVTDYEIISVQYI 158
>gi|152991056|ref|YP_001356778.1| transcription elongation factor GreA [Nitratiruptor sp. SB155-2]
gi|166200682|sp|A6Q4L2|GREA_NITSB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|151422917|dbj|BAF70421.1| transcription elongation factor GreA [Nitratiruptor sp. SB155-2]
Length = 163
Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T G++KIQ+E + EERP++++ I A+ +GDL ENAEY AAKE +
Sbjct: 1 MEQKEPMTQYGYEKIQKEFEALK-EERPKVVEEIERAKEHGDLRENAEYHAAKERLAFID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ EL +++ RA+VID S + D++ FG+TV L++ ++ Y IVG E++ + GL+
Sbjct: 60 ARLTELSDLLARAQVIDPSKLPHDKVGFGSTVKLLDIEEEEEIEYTIVGSTESNPEHGLI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S ++P+AR LIGKE GD I+V P GE +E+L+V +
Sbjct: 120 SYNTPLARQLIGKEEGDEITVKLPKGEIDFEVLEVYY 156
>gi|258405567|ref|YP_003198309.1| transcription elongation factor GreA [Desulfohalobium retbaense DSM
5692]
gi|257797794|gb|ACV68731.1| transcription elongation factor GreA [Desulfohalobium retbaense DSM
5692]
Length = 161
Score = 139 bits (351), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 107/156 (68%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D IP++ +GF+K++QEL ++ERP +I+AI EAR GDL ENA Y AA+E Q + E
Sbjct: 1 MDTIPISVEGFEKLKQELE-NLKKERPEVIQAIKEAREEGDLRENAGYDAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +E+ + + VID+ TM GD++AFGATV + + + + K Y ++G EA+V G +S
Sbjct: 60 RITYIESRLPQCNVIDLDTMGGDKVAFGATVEIEDMETEEVKRYTLLGPDEANVDQGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+A+AL+GK +GD VNAP G YE+L + +
Sbjct: 120 VFSPLAKALLGKRVGDEAIVNAPRGRIEYEVLSIEF 155
>gi|116749520|ref|YP_846207.1| transcription elongation factor GreA [Syntrophobacter fumaroxidans
MPOB]
gi|229485909|sp|A0LK20|GREA_SYNFM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116698584|gb|ABK17772.1| transcription elongation factor GreA [Syntrophobacter fumaroxidans
MPOB]
Length = 156
Score = 139 bits (351), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 108/152 (71%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
++P+T +GF++++ EL+ Q++ERP +I+AI EAR++GD+SENAEY+AAKE Q + EGR+
Sbjct: 3 RVPITKEGFERLKIELQRLQRDERPMVIRAIEEARSHGDISENAEYEAAKEKQAMIEGRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+L + E+++ S R FG+TV + + +G+ +Y++VG EADVQSG +S+
Sbjct: 63 QDLCQKMGECEIVEPSDNDNGRAIFGSTVVVEDTETGEVTSYRLVGPYEADVQSGTISVV 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +ALIGKE G+ I V P G + E+L++
Sbjct: 123 SPLGKALIGKEEGEEIRVQTPKGVRNIEVLEI 154
>gi|297380066|gb|ADI34953.1| transcription elongation factor GreA [Helicobacter pylori v225d]
Length = 164
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E++ GL+S
Sbjct: 61 RIVDLSEIIANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESNPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|91228943|ref|ZP_01262840.1| transcription elongation factor GreA [Vibrio alginolyticus 12G01]
gi|262393373|ref|YP_003285227.1| transcription elongation factor GreA [Vibrio sp. Ex25]
gi|269968316|ref|ZP_06182338.1| transcription elongation factor GreA [Vibrio alginolyticus 40B]
gi|91187503|gb|EAS73838.1| transcription elongation factor GreA [Vibrio alginolyticus 12G01]
gi|262336967|gb|ACY50762.1| transcription elongation factor GreA [Vibrio sp. Ex25]
gi|269827067|gb|EEZ81379.1| transcription elongation factor GreA [Vibrio alginolyticus 40B]
Length = 157
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 115/158 (72%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQKLRAELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENTGKVIFGSTVTLIDIDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD +++ PGG K +EI +V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVAIQTPGGAKDFEIDRVEYI 157
>gi|260771182|ref|ZP_05880109.1| transcription elongation factor GreA [Vibrio furnissii CIP 102972]
gi|260613779|gb|EEX38971.1| transcription elongation factor GreA [Vibrio furnissii CIP 102972]
gi|315179211|gb|ADT86125.1| transcription elongation factor GreA [Vibrio furnissii NCTC 11218]
Length = 157
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +K+ ++ R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRG-EKLLRDELDRLLKLRPKISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M +I FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEFKLSVAQVIDVTKMDNSGKIIFGSTVTLIDVDTDEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD ++++ PGGEK +EI V ++
Sbjct: 120 SVSSPIARGLIGKMEGDEVTISTPGGEKVFEIDHVDYV 157
>gi|78485225|ref|YP_391150.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2]
gi|123755246|sp|Q31H97|GREA_THICR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|78363511|gb|ABB41476.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2]
Length = 158
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G D +Q+EL+ ++ ERP + AI+EAR +GDL ENAEY AA+E Q L E R+ +
Sbjct: 5 PMTKEGADALQEELQHLKKVERPAVSNAIAEAREHGDLKENAEYHAAREQQGLMEARIKQ 64
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E+++ ++ID++ ++ + ++ FG+TV+++ ++ ++ Y+IVG++EAD++ +S++S
Sbjct: 65 IESLLGSVQIIDVTKLNPNGKVVFGSTVTILNVDTEEEVTYKIVGEEEADIKHNKISVNS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
PIARALI KE G+ I+V AP G YEI+++ ++
Sbjct: 125 PIARALIAKEEGEEITVKAPSGNIEYEIVEIQYV 158
>gi|260775433|ref|ZP_05884330.1| transcription elongation factor GreA [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608614|gb|EEX34779.1| transcription elongation factor GreA [Vibrio coralliilyticus ATCC
BAA-450]
Length = 157
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 116/158 (73%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K+++EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGEQKLREELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR L+GK GD + ++ PGG++ +EI V ++
Sbjct: 120 SVSSPIARGLVGKMEGDEVVISTPGGDRDFEIDSVEYV 157
>gi|237749802|ref|ZP_04580282.1| transcription elongation factor GreA [Helicobacter bilis ATCC
43879]
gi|229374552|gb|EEO24943.1| transcription elongation factor GreA [Helicobacter bilis ATCC
43879]
Length = 161
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 106/152 (69%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P++ GF+K+ QEL+ ++ +RP++ + I AR++GDL ENAEY AAKE Q E ++ E
Sbjct: 4 PMSKYGFNKLTQELKDLKEVQRPKVAQEIDIARSHGDLKENAEYHAAKEKQAFIEFKINE 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +++ A+VID ST+ D+++FG+T++++ N+ + Y IVG E++ GL+S +SP
Sbjct: 64 LSKMLSNAQVIDPSTLPHDKVSFGSTITILNLNTDKEVVYTIVGTTESNPSKGLISFNSP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ LIGKE GD + +N P GE +EIL++ +
Sbjct: 124 LAKELIGKEEGDEVIINLPAGETEFEILKIEY 155
>gi|90416147|ref|ZP_01224079.1| transcription elongation factor GreA [marine gamma proteobacterium
HTCC2207]
gi|90331872|gb|EAS47086.1| transcription elongation factor GreA [marine gamma proteobacterium
HTCC2207]
Length = 158
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++EL +E RP II+AI+ AR +GDL ENAEY AA+E Q+ EGR+
Sbjct: 3 KAPMTVEGEIALREELHHLIKEVRPTIIEAIATAREHGDLKENAEYHAAREQQSFTEGRI 62
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ +VIDI+ + GDR+ FG TV+++ + Y+IVGD EADV++ +S
Sbjct: 63 QDIEGKLSNIQVIDINKIPHGDRVVFGTTVTIINLDLDKTVTYKIVGDDEADVKACKISY 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARAL+GKE+ +++ V AP G+ YEI V +I
Sbjct: 123 QSPIARALMGKEISEVVVVKAPSGDVEYEIDNVEFI 158
>gi|256829409|ref|YP_003158137.1| transcription elongation factor GreA [Desulfomicrobium baculatum
DSM 4028]
gi|256578585|gb|ACU89721.1| transcription elongation factor GreA [Desulfomicrobium baculatum
DSM 4028]
Length = 162
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 107/157 (68%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP++ +GF ++++EL ++E RP II+AI EAR GDL ENA Y AA+E Q + E
Sbjct: 1 MNRIPISVEGFKRLEKELEDLKKE-RPAIIQAIKEAREEGDLRENAGYDAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ +E+ + R EVIDI T+ DR FGATV++ + + ++K Y ++G EAD G +S
Sbjct: 60 RISHIESRMIRFEVIDIDTLQSDRAVFGATVTVEDVETEERKTYTLLGADEADHTKGTIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ RAL+GK+ GD ISV P G YE++ V ++
Sbjct: 120 IESPVGRALLGKQEGDEISVQVPKGRVDYEVISVSFL 156
>gi|114562155|ref|YP_749668.1| transcription elongation factor GreA [Shewanella frigidimarina
NCIMB 400]
gi|114333448|gb|ABI70830.1| transcription elongation factor GreA [Shewanella frigidimarina
NCIMB 400]
Length = 158
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 108/156 (69%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T G D++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KVPMTVVGADQLRKELELLKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A++ID++ + R+ FG TV+++ ++ + Y+IVGD EAD++ L+S+
Sbjct: 63 RDIEGKLSNAQIIDVTKLENTGRVIFGTTVTILNIDTDAEVTYRIVGDDEADIKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGK GD +S+ PGG YEI++V ++
Sbjct: 123 NSPIARGLIGKSEGDEVSITTPGGLTDYEIVKVQYL 158
>gi|90022372|ref|YP_528199.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40]
gi|89951972|gb|ABD81987.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40]
Length = 160
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/156 (46%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T G +++EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 5 KYPMTVAGELALREELERLKKVDRPRIVQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 64
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VID+ T+ ++ FG TV L+ + + Y IVG+ EA ++ +S+
Sbjct: 65 QEIEAKLSNAQVIDVKTIPHSGKVIFGTTVDLINVETDEAITYTIVGEDEASIKLNKISV 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIARALIGKE GD+ V APGGE YEI V I
Sbjct: 125 TSPIARALIGKEEGDVAVVRAPGGEIEYEIDSVKHI 160
>gi|269961971|ref|ZP_06176326.1| transcription elongation factor GreA [Vibrio harveyi 1DA3]
gi|269833294|gb|EEZ87398.1| transcription elongation factor GreA [Vibrio harveyi 1DA3]
Length = 157
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/158 (46%), Positives = 113/158 (71%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G ++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQLLRTELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++TM ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTTMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIAR LIGK GD + + PGG K +EI V +I
Sbjct: 120 SISSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157
>gi|304413874|ref|ZP_07395291.1| transcription elongation factor [Candidatus Regiella insecticola
LSR1]
gi|304283594|gb|EFL91989.1| transcription elongation factor [Candidatus Regiella insecticola
LSR1]
Length = 162
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 110/156 (70%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T G +K+++EL + + + R II AI+EARA+GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVCGEEKLRKELEYLKNKRRQEIITAIAEARAHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VID++ + + RI FG+TV+++ + ++ Y+IVGD EA+ + L+S+
Sbjct: 63 QEIETKLSNAQVIDVTEIVNNGRIIFGSTVTVLNIATDEEYIYRIVGDDEANAKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+AR LIGK++ D + PGG+ YEI+ V ++
Sbjct: 123 NSPMARGLIGKQIDDTTVITTPGGDIEYEIIAVEYL 158
>gi|308183020|ref|YP_003927147.1| transcription elongation factor GreA [Helicobacter pylori PeCan4]
gi|308065205|gb|ADO07097.1| transcription elongation factor GreA [Helicobacter pylori PeCan4]
Length = 164
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E++ GL+S
Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESNPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|229525286|ref|ZP_04414691.1| transcription elongation factor GreA [Vibrio cholerae bv. albensis
VL426]
gi|229338867|gb|EEO03884.1| transcription elongation factor GreA [Vibrio cholerae bv. albensis
VL426]
Length = 150
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/151 (47%), Positives = 112/151 (74%), Gaps = 2/151 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MMEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICE 59
Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
++ ++E ++ A+VID++ M + ++ FGATV++++ NS ++K YQIVGD EAD++SG
Sbjct: 60 AQIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGR 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTY 150
+S++SPIAR LIGK GD +S+ PGG K Y
Sbjct: 120 ISVNSPIARGLIGKFEGDEVSIATPGGNKVY 150
>gi|88607617|ref|YP_505838.1| transcription elongation factor GreA [Anaplasma phagocytophilum HZ]
gi|88598680|gb|ABD44150.1| transcription elongation factor GreA [Anaplasma phagocytophilum HZ]
Length = 166
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 109/160 (68%), Gaps = 6/160 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T G+ K++ EL + E RP+IIK+IS+AR GDLSENAEY AA+E Q L E ++
Sbjct: 8 RFPITKGGYQKLESELEALKSE-RPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 66
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLV----EKNSGDKKNYQIVGDQEADVQSGL 119
ELE+ +RAEVI++S +SGD + FGATV++ + ++ + YQIVG+ EADV +
Sbjct: 67 MELESKKSRAEVIEVSELSGDTVMFGATVTVSVYDEQSDTTSEVKYQIVGEYEADVSKNM 126
Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158
+SI SP+ AL+GK GD + + P G+ K Y+I +V +I
Sbjct: 127 ISIKSPLVLALLGKREGDSVELKTPRGDYKVYQINKVEFI 166
>gi|113969357|ref|YP_733150.1| transcription elongation factor GreA [Shewanella sp. MR-4]
gi|114046584|ref|YP_737134.1| transcription elongation factor GreA [Shewanella sp. MR-7]
gi|117919466|ref|YP_868658.1| transcription elongation factor GreA [Shewanella sp. ANA-3]
gi|113884041|gb|ABI38093.1| transcription elongation factor GreA [Shewanella sp. MR-4]
gi|113888026|gb|ABI42077.1| transcription elongation factor GreA [Shewanella sp. MR-7]
gi|117611798|gb|ABK47252.1| transcription elongation factor GreA [Shewanella sp. ANA-3]
Length = 158
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T G +++++EL + E RP+I +AI+ AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KVPMTVVGAEQLRKELDMLKFERRPKITEAIASARELGDLKENAEYHAAREEQGICEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A++ID++ M+ + RI FG TV+++ ++ + Y+IVGD EA+++ L+S+
Sbjct: 63 RDIEGKLSNAQIIDVTKMANNGRIIFGTTVTILNLDTDAEVTYRIVGDDEANIKENLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GK GD +S+ PGG YEI+ V +I
Sbjct: 123 NSPIARGLVGKNEGDEVSIATPGGLTDYEIISVQYI 158
>gi|146283640|ref|YP_001173793.1| transcription elongation factor GreA [Pseudomonas stutzeri A1501]
gi|145571845|gb|ABP80951.1| transcription elongation factor GreA [Pseudomonas stutzeri A1501]
gi|327482035|gb|AEA85345.1| transcription elongation factor GreA [Pseudomonas stutzeri DSM
4166]
Length = 158
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 107/156 (68%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++EL+ + RP+I +AI+EAR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KFPMTIQGARALEEELKHLKTVLRPQITQAIAEARELGDLKENAEYHAAREQQGMVEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A+VIDI++++ ++ FG TV + + ++ YQIVGD EAD++ G +S+
Sbjct: 63 RDIEGRLQNAQVIDIASIAPTGKVIFGTTVDIANVETDEQVTYQIVGDDEADIKQGKLSV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSPIARALIGKE GD+++V P G YEI++V I
Sbjct: 123 SSPIARALIGKEEGDVVAVKTPSGLIEYEIVEVRHI 158
>gi|149192158|ref|ZP_01870378.1| transcription elongation factor GreA [Vibrio shilonii AK1]
gi|148833998|gb|EDL51015.1| transcription elongation factor GreA [Vibrio shilonii AK1]
Length = 157
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K++++L R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGEQKLREDLD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ + +I FG+TV+L++ ++ ++ YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKLDNSGKIIFGSTVTLIDIDTDAEQTYQIVGDDEADIKSGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD +++ PGG+K +EI +V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVTIVTPGGQKDFEIDKVAYI 157
>gi|28899240|ref|NP_798845.1| transcription elongation factor GreA [Vibrio parahaemolyticus RIMD
2210633]
gi|260362164|ref|ZP_05775154.1| transcription elongation factor GreA [Vibrio parahaemolyticus
K5030]
gi|260879066|ref|ZP_05891421.1| transcription elongation factor GreA [Vibrio parahaemolyticus
AN-5034]
gi|260900671|ref|ZP_05909066.1| transcription elongation factor GreA [Vibrio parahaemolyticus
AQ4037]
gi|31076674|sp|Q87LZ2|GREA_VIBPA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|28807464|dbj|BAC60729.1| transcription elongation factor GreA [Vibrio parahaemolyticus RIMD
2210633]
gi|308089586|gb|EFO39281.1| transcription elongation factor GreA [Vibrio parahaemolyticus
AN-5034]
gi|308110885|gb|EFO48425.1| transcription elongation factor GreA [Vibrio parahaemolyticus
AQ4037]
gi|308111060|gb|EFO48600.1| transcription elongation factor GreA [Vibrio parahaemolyticus
K5030]
Length = 157
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G ++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQMLRTELE-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENTGKVIFGSTVTLIDVDTDEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD +++ PGG K +EI +V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVAIQTPGGAKDFEIDRVEYI 157
>gi|258623151|ref|ZP_05718162.1| transcription elongation factor GreA [Vibrio mimicus VM573]
gi|258625329|ref|ZP_05720229.1| transcription elongation factor GreA [Vibrio mimicus VM603]
gi|258582395|gb|EEW07244.1| transcription elongation factor GreA [Vibrio mimicus VM603]
gi|258584571|gb|EEW09309.1| transcription elongation factor GreA [Vibrio mimicus VM573]
Length = 158
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 117/159 (73%), Gaps = 2/159 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++K+P+T +G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MMEKVPMTVRG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICE 59
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
++ ++E ++ A+VID++ M ++ FG+TV++++ N+ ++K YQIVGD EAD++SG
Sbjct: 60 AQIRDIEYKLSVAQVIDVTGMDNSGKVIFGSTVTVIDVNTDEEKTYQIVGDDEADIKSGR 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIAR LIGK GD +++ PGG+K +EI +V ++
Sbjct: 120 ISVNSPIARGLIGKFEGDEVAIATPGGDKVFEIDRVEYL 158
>gi|251771869|gb|EES52443.1| transcription elongation factor GreA [Leptospirillum
ferrodiazotrophum]
Length = 158
Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 108/156 (69%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G+ K+Q+EL ++ +R + I+ I+EARA+GDLSENAEY AAKE Q+ EG
Sbjct: 1 MQQTPMTKEGYAKLQEELERLKKVDRTKNIQDIAEARAHGDLSENAEYHAAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE ++ A V+ + DR+ FGATV+L ++G++K Y +VG +E D++ G +S
Sbjct: 61 RIKELEAKLSTAIVVSSAHQDRDRVTFGATVTLKNTSTGEEKTYTLVGQEEVDLKRGRLS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++SP+ +AL+G +G+ + + P GE YE+ ++ +
Sbjct: 121 VASPVGKALVGHRVGENVLIRVPAGEIEYEVCRIDY 156
>gi|217033071|ref|ZP_03438538.1| hypothetical protein HPB128_148g11 [Helicobacter pylori B128]
gi|298736570|ref|YP_003729096.1| transcription elongation factor GreA [Helicobacter pylori B8]
gi|216945215|gb|EEC23900.1| hypothetical protein HPB128_148g11 [Helicobacter pylori B128]
gi|298355760|emb|CBI66632.1| transcription elongation factor GreA [Helicobacter pylori B8]
Length = 164
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 103/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+ GL+S
Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESAPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDTVSIQLPNGESDFEILDIYY 156
>gi|125623471|ref|YP_001031954.1| transcription elongation factor greA [Lactococcus lactis subsp.
cremoris MG1363]
gi|166200668|sp|A2RIW3|GREA_LACLM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|124492279|emb|CAL97210.1| transcription elongation factor greA [Lactococcus lactis subsp.
cremoris MG1363]
gi|300070217|gb|ADJ59617.1| transcription elongation factor GreA [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 156
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/155 (45%), Positives = 104/155 (67%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M P+T +G DK++ EL + +RP +I I AR+YGDLSEN+EY+AAK+ Q E
Sbjct: 1 MEKTFPMTKEGLDKLKAELENLKLVKRPEVIDRIKVARSYGDLSENSEYEAAKDEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ +E +I AE++D + ++ D +A G V+ VE D+++YQIVG EAD +G +
Sbjct: 61 GRISTVETMIRYAEIVDNAKIAKDEVALGKNVTFVEVGETDEESYQIVGTAEADPFTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPIAR LIGK++GDI+ V P GE T +I++V
Sbjct: 121 SNESPIARVLIGKKVGDIVDVPLPVGEMTVKIVKV 155
>gi|109947754|ref|YP_664982.1| transcription elongation factor GreA [Helicobacter acinonychis str.
Sheeba]
gi|123362580|sp|Q17WJ3|GREA_HELAH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|109714975|emb|CAJ99983.1| greA [Helicobacter acinonychis str. Sheeba]
Length = 164
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 100/152 (65%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E R+ +
Sbjct: 5 PMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEARIVD 64
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L II+ A+VID + ++++FG+T+ ++ ++ + +Y IVG E+D GL+S SP
Sbjct: 65 LSEIISNAQVIDPGALMHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLISFGSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA++LIGK GD+ S+ P GE +EIL + +
Sbjct: 125 IAKSLIGKSKGDVASIQLPNGESDFEILDIYY 156
>gi|153207473|ref|ZP_01946173.1| transcription elongation factor GreA [Coxiella burnetii 'MSU Goat
Q177']
gi|161831566|ref|YP_001597133.1| transcription elongation factor GreA [Coxiella burnetii RSA 331]
gi|165918942|ref|ZP_02219028.1| transcription elongation factor GreA [Coxiella burnetii RSA 334]
gi|120576604|gb|EAX33228.1| transcription elongation factor GreA [Coxiella burnetii 'MSU Goat
Q177']
gi|161763433|gb|ABX79075.1| transcription elongation factor GreA [Coxiella burnetii RSA 331]
gi|165917339|gb|EDR35943.1| transcription elongation factor GreA [Coxiella burnetii RSA 334]
Length = 159
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T G K++ EL + ERP++I AI+EARA+GDL ENAEY AA+E Q EGR+
Sbjct: 5 IPITVNGVTKLRTELETLKTVERPKVIAAIAEARAHGDLKENAEYHAARERQGFIEGRIL 64
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E + ++IDIS + + ++ FGATV+L+ + + YQI+G EA+++ +SIS
Sbjct: 65 EIEAKLANCQIIDISQIPNEGKVIFGATVTLLNLETQTEVTYQIMGVDEANLKENKISIS 124
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP ARA+IGK + D+I V P G YEI+ V ++
Sbjct: 125 SPTARAMIGKYIEDVIEVTTPEGPVEYEIVDVEYL 159
>gi|226946316|ref|YP_002801389.1| transcription elongation factor GreA [Azotobacter vinelandii DJ]
gi|226721243|gb|ACO80414.1| Prokaryotic transcription elongation factor GreA [Azotobacter
vinelandii DJ]
Length = 158
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++EL+ + E RP+I +AI+EAR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KFPMTVQGARALEEELKHLKTELRPQITQAIAEARELGDLKENAEYHAAREQQGMVEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A+VID++ + ++ FG TV + + + YQIVGD EAD++ G +S+
Sbjct: 63 RDIEGRLQNAQVIDVTAIPHTGKVIFGVTVEIANVETDETVVYQIVGDDEADIKQGKLSV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSPIARAL+GKE GD+ +V P G YEI++V +
Sbjct: 123 SSPIARALVGKEEGDVAAVKTPSGTVEYEIIEVRHV 158
>gi|156975672|ref|YP_001446579.1| transcription elongation factor GreA [Vibrio harveyi ATCC BAA-1116]
gi|156527266|gb|ABU72352.1| hypothetical protein VIBHAR_03407 [Vibrio harveyi ATCC BAA-1116]
Length = 157
Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G ++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQLLRTELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID+++M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTSMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIAR LIGK GD + + PGG K +EI V +I
Sbjct: 120 SISSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157
>gi|167626378|ref|YP_001676878.1| transcription elongation factor GreA [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|241668809|ref|ZP_04756387.1| GreA/GreB family elongation factor [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254877341|ref|ZP_05250051.1| transcriptional elongation factor [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|259647641|sp|B0TYL2|GREA_FRAP2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|167596379|gb|ABZ86377.1| GreA/GreB family elongation factor [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254843362|gb|EET21776.1| transcriptional elongation factor [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 160
Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 111/155 (71%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR+
Sbjct: 5 RVPMTPAGEQALRAELSRLKKTERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGRI 64
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E+ ++ A+VID++ + + + FGATV+++ ++ ++ YQIVG+ EAD+ + +S+
Sbjct: 65 KDIESKLSNAQVIDVTKLQANGMVIFGATVTVINVDTEEETTYQIVGEDEADIDNHKISV 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+P+ARALI KE+GD I ++ P G+ TYEI+ V +
Sbjct: 125 VAPLARALIKKEVGDEIILDTPKGKVTYEIVDVEY 159
>gi|126175452|ref|YP_001051601.1| transcription elongation factor GreA [Shewanella baltica OS155]
gi|153001803|ref|YP_001367484.1| transcription elongation factor GreA [Shewanella baltica OS185]
gi|160876536|ref|YP_001555852.1| transcription elongation factor GreA [Shewanella baltica OS195]
gi|217972302|ref|YP_002357053.1| transcription elongation factor GreA [Shewanella baltica OS223]
gi|304410278|ref|ZP_07391897.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
gi|307302011|ref|ZP_07581769.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
gi|125998657|gb|ABN62732.1| transcription elongation factor GreA [Shewanella baltica OS155]
gi|151366421|gb|ABS09421.1| transcription elongation factor GreA [Shewanella baltica OS185]
gi|160862058|gb|ABX50592.1| transcription elongation factor GreA [Shewanella baltica OS195]
gi|217497437|gb|ACK45630.1| transcription elongation factor GreA [Shewanella baltica OS223]
gi|304351687|gb|EFM16086.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
gi|306914049|gb|EFN44470.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
gi|315268730|gb|ADT95583.1| transcription elongation factor GreA [Shewanella baltica OS678]
Length = 158
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T G +++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KVPMTVVGAEQLRKELDILKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A++ID++ M + RI FGATV+++ ++ + Y+IVGD EA+++ L+S+
Sbjct: 63 RDIEGKLSNAQIIDVTKMVNNGRIIFGATVTILNLDTDVEVTYRIVGDDEANIKENLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GK GD +S+ PGG YEI+ V ++
Sbjct: 123 NSPIARGLVGKNEGDEVSITTPGGMTDYEIISVQYL 158
>gi|269103415|ref|ZP_06156112.1| transcription elongation factor GreA [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163313|gb|EEZ41809.1| transcription elongation factor GreA [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 157
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T +G K++QEL + RP I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MDKVPMTVRGEQKLRQELEVLMKR-RPLISQAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG TV+L+ ++ ++ Y+IVGD EAD + L+
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMPNSGKVIFGTTVTLLNLDTDEETTYRIVGDDEADFKQNLI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD + + PGG K +EI++V +I
Sbjct: 120 SVNSPIARGLIGKMEGDEVQIATPGGTKEFEIVEVQYI 157
>gi|209364053|ref|YP_001424721.2| transcription elongation factor [Coxiella burnetii Dugway
5J108-111]
gi|212212334|ref|YP_002303270.1| transcription elongation factor [Coxiella burnetii CbuG_Q212]
gi|212218695|ref|YP_002305482.1| transcription elongation factor [Coxiella burnetii CbuK_Q154]
gi|215919153|ref|NP_820273.2| transcription elongation factor [Coxiella burnetii RSA 493]
gi|206584037|gb|AAO90787.2| transcription elongation factor [Coxiella burnetii RSA 493]
gi|207081986|gb|ABS78133.2| transcription elongation factor [Coxiella burnetii Dugway
5J108-111]
gi|212010744|gb|ACJ18125.1| transcription elongation factor [Coxiella burnetii CbuG_Q212]
gi|212012957|gb|ACJ20337.1| transcription elongation factor [Coxiella burnetii CbuK_Q154]
Length = 173
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T G K++ EL + ERP++I AI+EARA+GDL ENAEY AA+E Q EGR+
Sbjct: 19 IPITVNGVTKLRTELETLKTVERPKVIAAIAEARAHGDLKENAEYHAARERQGFIEGRIL 78
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E + ++IDIS + + ++ FGATV+L+ + + YQI+G EA+++ +SIS
Sbjct: 79 EIEAKLANCQIIDISQIPNEGKVIFGATVTLLNLETQTEVTYQIMGVDEANLKENKISIS 138
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP ARA+IGK + D+I V P G YEI+ V ++
Sbjct: 139 SPTARAMIGKYIEDVIEVTTPEGPVEYEIVDVEYL 173
>gi|119478511|ref|ZP_01618473.1| Transcription elongation factor GreA [marine gamma proteobacterium
HTCC2143]
gi|119448492|gb|EAW29740.1| Transcription elongation factor GreA [marine gamma proteobacterium
HTCC2143]
Length = 153
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 106/150 (70%), Gaps = 1/150 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL + E+RPRI++ I++AR +GDL ENAEY AA+E Q EGR+ E+
Sbjct: 1 MTVAGEAAMRAELHRLKSEDRPRIVQDIADAREHGDLKENAEYHAAREQQGFCEGRIQEI 60
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ + VID++T+ S ++ FG TV++V + ++ Y+IVG+ EA+V +G++S++SP
Sbjct: 61 EGKLSDSIVIDVTTIPSTGKVIFGTTVAIVNCETDEEVTYKIVGEDEANVSAGMISVTSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IARALIGKE+GD+ V P G+ YEI +V
Sbjct: 121 IARALIGKEVGDVAVVKTPKGDVEYEIDEV 150
>gi|317484639|ref|ZP_07943542.1| transcription elongation factor GreA [Bilophila wadsworthia 3_1_6]
gi|316924113|gb|EFV45296.1| transcription elongation factor GreA [Bilophila wadsworthia 3_1_6]
Length = 160
Score = 137 bits (345), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP++ +GF ++QEL R ++ERP +I+AI EAR GDL ENA Y AA+E Q + E R+
Sbjct: 4 IPISKEGFQALEQELD-RLKKERPHVIQAIKEAREEGDLKENAGYDAARERQGMLEARIK 62
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E+ + VID+ST+S ++ FGATV++ + ++G+++ + ++G EAD G +SI S
Sbjct: 63 YIESRMALFNVIDLSTLSSEKAIFGATVTVEDADTGEEREFTLLGPDEADYAKGTISIQS 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ AL+GKE+GD I+VNAP G YEI+ + +
Sbjct: 123 PVGVALLGKEVGDEITVNAPRGRINYEIIDIQF 155
>gi|163750815|ref|ZP_02158050.1| transcription elongation factor GreA [Shewanella benthica KT99]
gi|161329510|gb|EDQ00504.1| transcription elongation factor GreA [Shewanella benthica KT99]
Length = 158
Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G +++++EL + E+RP I +AI AR GDL ENAEY AA+E Q + E
Sbjct: 1 MNKVPMTVVGAEQLRKELTHLKFEQRPSITQAIGTARELGDLKENAEYHAAREEQGICEA 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ ++ID++ M + RI FG TV+++ + D+ Y+IVG+ EA+++ L+
Sbjct: 61 RIRDIEGKLSNVQIIDVTKMENSGRIIFGTTVTILNVETEDESTYRIVGEDEANIKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK L D +++ PGG YEI+ V +I
Sbjct: 121 SVTSPIARGLVGKNLDDEVNIQTPGGTTDYEIIAVEYI 158
>gi|242280745|ref|YP_002992874.1| transcription elongation factor GreA [Desulfovibrio salexigens DSM
2638]
gi|259647639|sp|C6BRV2|GREA_DESAD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|242123639|gb|ACS81335.1| transcription elongation factor GreA [Desulfovibrio salexigens DSM
2638]
Length = 160
Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP++ +GF KI+ EL ++E RP +IKAI+EAR GDL EN Y AA+E Q + E ++
Sbjct: 4 IPISKEGFAKIKAELASLKKE-RPEVIKAIAEAREEGDLKENGGYHAARERQGMLEAKIN 62
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E+ I + V+D++T+ G++I FGATV+L + ++G +K Y I+G E+D + G++SI S
Sbjct: 63 YIESRIPQFNVVDMTTLGGEKITFGATVTLEDIDTGAEKTYTIMGPDESDFKKGIISIES 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ +AL+GK GD + VNAP G+ Y I+ V++
Sbjct: 123 PVGKALLGKIEGDEVVVNAPKGKIEYGIVSVIF 155
>gi|163802294|ref|ZP_02196188.1| transcription elongation factor GreA [Vibrio sp. AND4]
gi|159173823|gb|EDP58637.1| transcription elongation factor GreA [Vibrio sp. AND4]
Length = 157
Score = 137 bits (344), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+TS+G +++ + R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTSRG-EQLLRTELERLLKLRPQISQAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++TM ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEFKLSVAQVIDVTTMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD + + PGG K +EI V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157
>gi|94986751|ref|YP_594684.1| transcription elongation factor GreA [Lawsonia intracellularis
PHE/MN1-00]
gi|94731000|emb|CAJ54363.1| transcription elongation factor greA [Lawsonia intracellularis
PHE/MN1-00]
Length = 157
Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 109/153 (71%), Gaps = 1/153 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP++ +G+ +++EL R ++ERP +I+AI EAR GDL ENA Y AA+E Q + E R+
Sbjct: 3 IPISQQGYQNLEKELD-RLKKERPAVIQAIKEAREEGDLKENAGYDAARERQGMLEARIN 61
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E+ + + +IDI+T+SGD+ FGATV++ + +SG++K + ++G EAD G +SI S
Sbjct: 62 YIESRMAQFNIIDITTLSGDKAIFGATVTVEDIDSGERKEFTLLGPDEADYTKGSISIQS 121
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ RAL+GK++GD ++V+ P G +YEI+ + +
Sbjct: 122 PVGRALLGKKVGDELTVDVPRGRISYEIIDIQF 154
>gi|83644091|ref|YP_432526.1| transcription elongation factor [Hahella chejuensis KCTC 2396]
gi|83632134|gb|ABC28101.1| Transcription elongation factor [Hahella chejuensis KCTC 2396]
Length = 158
Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 71/152 (46%), Positives = 110/152 (72%), Gaps = 1/152 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T G +++EL + +RPR+I AI+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MSKIPMTKAGEQALREELNRLKTVDRPRVITAIAEAREHGDLKENAEYHAAREQQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ ++ +++ID++++ ++ FG TV+++ ++ D +YQIVGD EAD++ G +
Sbjct: 61 RIAEIESKLSMSQIIDLTSIENTGKVIFGVTVNIINLDTDDVSSYQIVGDDEADIKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152
S+SSPIARALIGK +GD++ V P G YEI
Sbjct: 121 SVSSPIARALIGKTVGDVVVVQVPSGMVEYEI 152
>gi|170727907|ref|YP_001761933.1| transcription elongation factor GreA [Shewanella woodyi ATCC 51908]
gi|169813254|gb|ACA87838.1| transcription elongation factor GreA [Shewanella woodyi ATCC 51908]
Length = 153
Score = 137 bits (344), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G D++++EL + + E+RP+I +AI EAR GDL ENAEY AA+E Q L E R+ +L
Sbjct: 1 MTIVGADQLRKELDYLKFEKRPKIAEAIGEARELGDLKENAEYHAAREEQGLCEARVRDL 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A++ID++ M RI FG TV+++ ++ + Y+IVGD EA+++ L+S+SSP
Sbjct: 61 EGKLSNAQIIDVTKMQNTGRIIFGTTVTILNIDTDVETTYRIVGDDEANIKENLLSVSSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGK + D ++++ PGG YEI V +I
Sbjct: 121 IARGLIGKNVDDEVTISTPGGMTEYEITAVEYI 153
>gi|220904317|ref|YP_002479629.1| transcription elongation factor GreA [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|254799558|sp|B8IZM4|GREA_DESDA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|219868616|gb|ACL48951.1| transcription elongation factor GreA [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 162
Score = 136 bits (343), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 71/153 (46%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP++ +G+ +++EL R + ERP II+AI EAR GDL ENA Y AA+E Q + E R+
Sbjct: 4 IPISVQGYKALEEEL-ARLKSERPEIIQAIKEAREEGDLRENAGYDAARERQGMAEARIK 62
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E+ + +VID+ T+SGD++ FGATV L + +SG+ K Y I+G EAD G +S S
Sbjct: 63 YIESRMALYQVIDLDTLSGDKVIFGATVDLEDVDSGEAKTYTILGPDEADPSKGSISFLS 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ +AL+G+E GD +SV P G TYEI+ V +
Sbjct: 123 PVGQALLGREEGDEVSVEIPRGRVTYEIIGVSF 155
>gi|116511431|ref|YP_808647.1| transcription elongation factor GreA [Lactococcus lactis subsp.
cremoris SK11]
gi|123025545|sp|Q030Z7|GREA_LACLS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116107085|gb|ABJ72225.1| transcription elongation factor GreA [Lactococcus lactis subsp.
cremoris SK11]
Length = 156
Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 105/155 (67%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M P+T +G DK++ EL + +RP +I I AR+YGDLSEN+EY+AAK+ Q E
Sbjct: 1 MEKTFPMTKEGLDKLKAELENLKLVKRPEVIDRIKVARSYGDLSENSEYEAAKDEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ +E +I AE+++ + ++ D +A G V+ VE D+++YQIVG EAD +G +
Sbjct: 61 GRISTVETMIRYAEIVNNAKIAKDEVALGKNVTFVEVGETDEESYQIVGTAEADPFTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPIAR LIGK++GDI++V P GE T +I++V
Sbjct: 121 SNESPIARVLIGKKVGDIVNVPLPVGEMTVKIVKV 155
>gi|298529319|ref|ZP_07016722.1| transcription elongation factor GreA [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510755|gb|EFI34658.1| transcription elongation factor GreA [Desulfonatronospira
thiodismutans ASO3-1]
Length = 165
Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D IP++ +GF +++QEL + Q ERP +I+AI EAR GDL ENA Y AA+E Q L E
Sbjct: 1 MSDSIPISEEGFARLKQELE-KLQAERPEVIQAIKEAREEGDLKENAGYDAARERQGLLE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A++ + + +ID+ TM G+++ +GATV + ++G+ K Y ++G E D +
Sbjct: 60 AKIAQITSRMPMFNIIDLDTMDGNKVCYGATVEIENVDTGEVKKYTLLGPDETDFVPDSL 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+ SP+ARAL+G+E+GD VNAP G+ YEIL + +
Sbjct: 120 SVFSPLARALMGREVGDETVVNAPKGKIEYEILDIKF 156
>gi|27904835|ref|NP_777961.1| transcription elongation factor GreA [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|29611722|sp|P59489|GREA_BUCBP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|27904233|gb|AAO27066.1| transcription elongation factor GreA [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 159
Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 65/158 (41%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+IP+T G +K+++EL + +RP+IIK+I EAR +GDL EN+EY AA+E Q E
Sbjct: 1 MNDQIPMTILGVEKLRKELEMLKTIKRPKIIKSIIEARQHGDLKENSEYHAAREEQGFCE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E +++A +IDI+ + + I FG+TV+++ S + Y+IVGD E++ + L
Sbjct: 61 GRIKEIELKLSKARIIDITKVKNNGVIIFGSTVTILNLTSNQEFTYRIVGDDESNFKRKL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SI+SP++R L+GK++ D+ ++ P G+ Y+IL++ +
Sbjct: 121 ISINSPMSRGLVGKKVSDVATIKTPVGDVKYKILKIEY 158
>gi|223038587|ref|ZP_03608880.1| transcription elongation factor GreA [Campylobacter rectus RM3267]
gi|222879989|gb|EEF15077.1| transcription elongation factor GreA [Campylobacter rectus RM3267]
Length = 162
Score = 136 bits (343), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 104/152 (68%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++KI EL+ + ERP I++ I AR++GDL ENAEY AA+E Q E R+AE
Sbjct: 4 PMTLFGYEKITNELKNLKTVERPNIVEEIDIARSHGDLKENAEYHAAREKQAFIESRIAE 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +I++RA+VID S D++ FG+TV +++ + +K Y +VG E++++ GL+SI+SP
Sbjct: 64 LSDIVSRAKVIDPSEYEHDKVKFGSTVVIMDVETELEKTYTLVGTPESNLERGLISINSP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ LIGK GD +++N P G EI+ V +
Sbjct: 124 LAKQLIGKSEGDEVALNLPNGRSDVEIVSVSY 155
>gi|33152720|ref|NP_874073.1| transcription elongation factor GreA [Haemophilus ducreyi 35000HP]
gi|71152089|sp|Q7VL00|GREA_HAEDU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|33148944|gb|AAP96462.1| transcription elongation factor [Haemophilus ducreyi 35000HP]
Length = 158
Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 112/155 (72%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + A+VID++ M+ + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL+S+
Sbjct: 63 QEIEGKLGNAQVIDVAKMTNNGKVIFGATVGLVNIDTDEEVTYRIVGDDEANIKEGLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SPIAR L+GK + D +S+ PGG+ ++I+ V +
Sbjct: 123 NSPIARGLVGKSVDDSVSIITPGGKVEFDIISVEY 157
>gi|330447386|ref|ZP_08311035.1| transcription elongation factor GreA [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328491577|dbj|GAA05532.1| transcription elongation factor GreA [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 157
Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 112/158 (70%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K++ EL + RP I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGEQKLRSELDVLLKR-RPLISQAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A++ID++TM ++ FG T++L++ ++ + Y IVGD EAD++ L+
Sbjct: 60 QIRDIEYKLSVAQIIDVTTMPNTGKVIFGTTITLLDLDTDKEVTYCIVGDDEADIKQNLI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD ++++ PGG+K +EIL+V +I
Sbjct: 120 SVNSPIARGLIGKMEGDEVAISTPGGQKEFEILEVQYI 157
>gi|332534013|ref|ZP_08409864.1| transcription elongation factor GreA [Pseudoalteromonas
haloplanktis ANT/505]
gi|332036562|gb|EGI73029.1| transcription elongation factor GreA [Pseudoalteromonas
haloplanktis ANT/505]
Length = 158
Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 106/155 (68%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G D +++EL + RP+II I+ AR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTVRGADLLRKELNELKTVTRPKIIADIAVAREHGDLKENAEYHAAREQQGFCEGRIQ 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ ++ID++ M ++ FG TV++V ++ + Y+IVGD EAD+++ L+S++
Sbjct: 64 EIEAKLSNVQIIDVTKMPNTGKVIFGTTVTIVNVDTDAEVKYRIVGDDEADIKNNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGK++ D +S+ P G YEI++V ++
Sbjct: 124 SPIARGLIGKQVDDAVSIQTPKGIVEYEIIEVEYL 158
>gi|73666717|ref|YP_302733.1| transcription elongation factor GreA [Ehrlichia canis str. Jake]
gi|72393858|gb|AAZ68135.1| transcription elongation factor GreA [Ehrlichia canis str. Jake]
Length = 170
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 116/163 (71%), Gaps = 6/163 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ P+T GF+K++ EL + ERP+IIK+ISEAR GDLSENAEY AA+E Q L E
Sbjct: 9 MNERFPITKSGFEKLELELE-SLKHERPKIIKSISEARELGDLSENAEYHAARERQGLIE 67
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATV--SLVEKNSG--DKKNYQIVGDQEADVQ 116
++ ELE+ +RAEVID+S +SGD + FGATV S+ ++ +G D+ Y+IVG+ E D+
Sbjct: 68 SKIMELESKRSRAEVIDVSNLSGDTVMFGATVTMSIYDEQTGNTDEVVYKIVGEYEVDIS 127
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158
++SI SP+ +L+GK+ GD++ V P G+ K Y+I+++ +I
Sbjct: 128 KQMISIKSPLVLSLLGKKEGDVVEVRTPKGDYKIYKIIKIEFI 170
>gi|328675796|gb|AEB28471.1| Transcription elongation factor GreA [Francisella cf. novicida
3523]
Length = 160
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR
Sbjct: 4 DRVPMTPAGEQALRAELEKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63
Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S
Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETIYKIVGEDEADIDNNKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+++P+ARALI KE GD +S++ P G+ TYEI+ V +
Sbjct: 124 VAAPLARALIKKEEGDEVSLDTPKGKVTYEIVAVEY 159
>gi|167625072|ref|YP_001675366.1| transcription elongation factor GreA [Shewanella halifaxensis
HAW-EB4]
gi|167355094|gb|ABZ77707.1| transcription elongation factor GreA [Shewanella halifaxensis
HAW-EB4]
Length = 153
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++++EL + E RP+I +AI EAR GDL ENAEY AA+E Q L E R+ ++
Sbjct: 1 MTVVGAERLRKELDHLKFERRPKIAEAIGEARELGDLKENAEYHAAREEQGLCEARVRDI 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A++ID++TM + R+ FG+TV+++ ++ + Y+IVG+ EA+++ L+S+SSP
Sbjct: 61 EGKLSHAQIIDVTTMDNNGRVIFGSTVTILNLDTEGEVTYRIVGEDEANIRENLLSVSSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGK L D IS+ PGG +EI++V +I
Sbjct: 121 IARGLIGKNLDDEISIVTPGGTTDFEIIKVDYI 153
>gi|301165527|emb|CBW25098.1| transcription elongation factor greA [Bacteriovorax marinus SJ]
Length = 158
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 105/158 (66%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ P+T +G+DK+Q EL + ER + I+EAR GDL ENAEY +AKE Q++ E
Sbjct: 1 MSNETPITKEGYDKVQAELDHLIKVEREELKTTIAEARELGDLKENAEYHSAKEKQSVVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ +L+ +I A+VID T+S D+I FGATV+L+ + Y+IVG+ E++++ G +
Sbjct: 61 GRIMQLQGVIANAQVIDPKTVSTDKIVFGATVTLLNVEEDETVVYKIVGEIESNMKEGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SP+ +A+IGKE GD + V AP G+ YE+ +I
Sbjct: 121 SYKSPLGKAVIGKEEGDTVIVKAPKGDIEYEVESFEYI 158
>gi|296113338|ref|YP_003627276.1| transcription elongation factor GreA [Moraxella catarrhalis RH4]
gi|295921032|gb|ADG61383.1| transcription elongation factor GreA [Moraxella catarrhalis RH4]
gi|326560322|gb|EGE10710.1| transcription elongation factor GreA [Moraxella catarrhalis 7169]
gi|326562019|gb|EGE12349.1| transcription elongation factor GreA [Moraxella catarrhalis
103P14B1]
gi|326563561|gb|EGE13820.1| transcription elongation factor GreA [Moraxella catarrhalis
12P80B1]
gi|326566359|gb|EGE16509.1| transcription elongation factor GreA [Moraxella catarrhalis BC1]
gi|326570169|gb|EGE20214.1| transcription elongation factor GreA [Moraxella catarrhalis BC8]
gi|326570907|gb|EGE20931.1| transcription elongation factor GreA [Moraxella catarrhalis BC7]
gi|326574514|gb|EGE24456.1| transcription elongation factor GreA [Moraxella catarrhalis
101P30B1]
gi|326575898|gb|EGE25821.1| transcription elongation factor GreA [Moraxella catarrhalis CO72]
gi|326576362|gb|EGE26271.1| transcription elongation factor GreA [Moraxella catarrhalis O35E]
Length = 158
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/155 (43%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G ++ EL+ + ERPRI AI+EAR +GDL ENAEY AA+E Q E R+
Sbjct: 3 RYPMTPEGHKALEDELKQLKTVERPRITTAIAEAREHGDLKENAEYHAAREQQGFCEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A++ID + + + R+ FG TV L + G K+ Y+IVGD EAD + G +S+
Sbjct: 63 RDIEAKLSGAQIIDPAKLPKEGRVVFGVTVVLENMDDGAKRRYKIVGDDEADFKVGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SPIAR LIGK GD + P G +EIL+V++
Sbjct: 123 NSPIARGLIGKSEGDEAKIQTPSGLAEFEILEVIY 157
>gi|262163952|ref|ZP_06031691.1| transcription elongation factor GreA [Vibrio mimicus VM223]
gi|262172290|ref|ZP_06039968.1| transcription elongation factor GreA [Vibrio mimicus MB-451]
gi|261893366|gb|EEY39352.1| transcription elongation factor GreA [Vibrio mimicus MB-451]
gi|262027480|gb|EEY46146.1| transcription elongation factor GreA [Vibrio mimicus VM223]
Length = 157
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 116/158 (73%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG+TV++++ N+ ++K YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVTGMDNSGKVIFGSTVTVIDVNTDEEKTYQIVGDDEADIKSGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +++ PGG+K +EI +V ++
Sbjct: 120 SVNSPIARGLIGKFEGDEVAIATPGGDKVFEIDRVEYL 157
>gi|327399334|ref|YP_004340203.1| transcription elongation factor GreA [Hippea maritima DSM 10411]
gi|327181963|gb|AEA34144.1| transcription elongation factor GreA [Hippea maritima DSM 10411]
Length = 156
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/155 (45%), Positives = 103/155 (66%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K+ +T +G+ K+ +E+ Q+ +RP IIK I EARA GDLSENAEY AAKE L E
Sbjct: 1 MAEKMLITPEGYRKLLEEMEDLQKNQRPAIIKEIEEARAKGDLSENAEYHAAKEKHALIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++EL I A+V+D T+ DR+ FG V L + ++ Y IVG+ E+D ++G +
Sbjct: 61 NRISELSKKINNAQVVDPETVPKDRVNFGCKVILYDIEKEEEIEYMIVGEDESDPENGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SI+SPIAR+L+GK+ GD + V P G + +EI ++
Sbjct: 121 SINSPIARSLLGKQEGDEVEVKVPAGVRRFEIEEI 155
>gi|320353912|ref|YP_004195251.1| transcription elongation factor GreA [Desulfobulbus propionicus DSM
2032]
gi|320122414|gb|ADW17960.1| transcription elongation factor GreA [Desulfobulbus propionicus DSM
2032]
Length = 161
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 111/155 (71%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +IP++ G ++++EL ++ ERP I+KAI ARA+GDLSENAEY AAKE Q+L E
Sbjct: 1 MVVRIPMSLTGNRQLREELERLERVERPEIVKAIEVARAHGDLSENAEYHAAKERQSLVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL++ + RAEVID S +S +R FG V+L++ + + YQ++G +EADV+ G +
Sbjct: 61 GRILELKDKLGRAEVIDCSKVSTNRAVFGTVVTLMDLTTEVEVTYQLLGPEEADVKKGSI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S+ SP+ +AL+GKE+GD + PGG + +E++ +
Sbjct: 121 SVLSPLGQALLGKEIGDEVVTKTPGGMREFEVIDI 155
>gi|262274892|ref|ZP_06052703.1| transcription elongation factor GreA [Grimontia hollisae CIP
101886]
gi|262221455|gb|EEY72769.1| transcription elongation factor GreA [Grimontia hollisae CIP
101886]
Length = 157
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 112/158 (70%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T +G +++ ++ R + RP I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MDKVPMTVRG-EQLLRDELDRLLKRRPLITQAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VIDI+ M + ++ FGATV+L++ ++ ++ YQIVGD EAD + L+
Sbjct: 60 QIRDIEYKLSVAQVIDIAKMPNNGKVIFGATVTLIDCHTDEEVTYQIVGDDEADFKKNLI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE GD +++ PGG K +EI V +I
Sbjct: 120 SVNSPIARGLIGKEEGDEVAITVPGGVKEFEIESVKYI 157
>gi|126726046|ref|ZP_01741888.1| transcription elongation factor GreA [Rhodobacterales bacterium
HTCC2150]
gi|126705250|gb|EBA04341.1| transcription elongation factor GreA [Rhodobacterales bacterium
HTCC2150]
Length = 156
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GF ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EG
Sbjct: 1 MEKIPLTRGGFTALEAELKNLKTVERPAIIAAIAEAREHGDLSENAEYHSAREKHSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE II+ AEVID M+G I FGATV++V++++ ++K YQIVG+ EA+++ G ++
Sbjct: 61 RVKELEAIISLAEVIDPVGMTG-AIKFGATVTIVDEDTDEEKTYQIVGEHEANIEQGKLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ SP++R LIGKE GD + V PGG ++YEIL++
Sbjct: 120 LKSPLSRGLIGKEEGDSVEVKTPGGTRSYEILKI 153
>gi|255321856|ref|ZP_05363006.1| transcription elongation factor GreA [Campylobacter showae RM3277]
gi|255300960|gb|EET80227.1| transcription elongation factor GreA [Campylobacter showae RM3277]
Length = 160
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 104/152 (68%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++KI EL+ + ERP I++ I AR++GDL ENAEY AA+E Q E R+AE
Sbjct: 4 PMTLFGYEKITNELKNLKTVERPNIVEEIDIARSHGDLKENAEYHAAREKQAFIESRIAE 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +II+RA+VID + D++ FG+TV +++ + +K Y +VG E++++ GL+SI+SP
Sbjct: 64 LSDIISRAKVIDPAEYEHDKVKFGSTVVIMDVETELEKTYTLVGTPESNLERGLISINSP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ LIGK GD +++N P G EI+ V +
Sbjct: 124 LAKQLIGKSEGDEVALNLPNGRSDVEIVSVSY 155
>gi|91792357|ref|YP_562008.1| transcription elongation factor GreA [Shewanella denitrificans
OS217]
gi|91714359|gb|ABE54285.1| transcription elongation factor GreA [Shewanella denitrificans
OS217]
Length = 158
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T G +++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KVPMTVVGAEQLRKELELLKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A++ID++ + R+ FG TV+++ + + Y+IVGD EAD++ L+S+
Sbjct: 63 RDIEGKLSNAQIIDVTKIENTGRVIFGTTVTILNVETDAEVKYRIVGDDEADIKQNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR LIGK GD +S+ PGG YEI+ V +I
Sbjct: 123 NSPIARGLIGKNEGDEVSITTPGGLTDYEIIAVEYI 158
>gi|118602845|ref|YP_904060.1| transcription elongation factor GreA [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
gi|189042247|sp|A1AXD2|GREA_RUTMC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|118567784|gb|ABL02589.1| transcription elongation factor GreA [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 158
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ IP+T G ++ EL + RPRII+ I ARA+GDL ENAEY AAKE Q EG
Sbjct: 1 MENIPMTVFGAKVLEAELLKLKNVSRPRIIENIVTARAHGDLKENAEYHAAKEEQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++R +VID++ ++ D R FG T++L+ + Y+IVG+ EAD+ G +
Sbjct: 61 RIKEVESKLSRMQVIDVTKLNQDGRCVFGTTITLMNIEDDSETTYKIVGEDEADIILGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SPIA AL+G E GD ++V AP G+ YE+L V +I
Sbjct: 121 SCHSPIASALMGNEEGDEVTVKAPKGDIVYEVLSVEYI 158
>gi|57238811|ref|YP_179947.1| transcription elongation factor greA [Ehrlichia ruminantium str.
Welgevonden]
gi|57160890|emb|CAH57795.1| transcription elongation factor GreA [Ehrlichia ruminantium str.
Welgevonden]
Length = 162
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 115/163 (70%), Gaps = 6/163 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ P+T GF+K++ EL + E RP+IIK+ISEAR GDLSENAEY AA+E Q L E
Sbjct: 1 MNERFPITKAGFEKLELELESLKYE-RPQIIKSISEARELGDLSENAEYHAARERQGLVE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV----EKNSGDKKNYQIVGDQEADVQ 116
++ ELE+ +RAEVID++ +SGD + FGATV++ + S D+ YQIVG+ E+D+
Sbjct: 60 SKIMELESKKSRAEVIDVANLSGDTVMFGATVTMSIYDEQTGSTDEVIYQIVGEYESDIS 119
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158
++SI SP+ +L+GK+ GD++ V P G+ + Y+I+++ +I
Sbjct: 120 KRMISIKSPLVISLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 162
>gi|262376633|ref|ZP_06069861.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145]
gi|262308343|gb|EEY89478.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145]
Length = 158
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +++EL + +RPRI +I+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 RYPMTPEGKIALEKELHQLKTVDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A+VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+
Sbjct: 63 QDIEGKLGAAQVIDVKELEHNGRVVFGVTVTIENLDTEEQKTYKIVGDDEADFKINKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GK GD + +N P GE YEI++V ++
Sbjct: 123 NSPIARGLLGKNEGDDVKINTPNGEVEYEIVKVEYL 158
>gi|54307806|ref|YP_128826.1| transcription elongation factor GreA [Photobacterium profundum SS9]
gi|46912229|emb|CAG19024.1| putative transcription elongation factor GreA [Photobacterium
profundum SS9]
Length = 166
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 108/159 (67%), Gaps = 2/159 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++K+P+T +G +++EL + RP I KAI EAR GDL ENAEY AA+E Q + E
Sbjct: 9 FMEKVPMTVRGEQTLREELEILLKR-RPIISKAIGEARELGDLKENAEYHAAREEQGICE 67
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
++ ++E ++ ++VID++ M ++ FG TV L++ N+ D+ Y IVGD EAD++ L
Sbjct: 68 AQIRDIEYKLSVSQVIDVTKMENTGKVIFGTTVKLIDINTDDELTYCIVGDDEADIKKNL 127
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIAR LIGK GD +S++ PGG K +EI QV ++
Sbjct: 128 ISVNSPIARGLIGKLEGDEVSIHTPGGVKEFEIEQVQYL 166
>gi|32265653|ref|NP_859685.1| transcription elongation factor GreA [Helicobacter hepaticus ATCC
51449]
gi|81666522|sp|Q7VJT9|GREA_HELHP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|32261701|gb|AAP76751.1| transcription elongation factor GreA [Helicobacter hepaticus ATCC
51449]
Length = 163
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 105/152 (69%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T+ G++K+ EL+ ++ ERPRI+ I AR++GDL ENAEY AA+E Q E R+ E
Sbjct: 5 PMTNYGYEKLCAELKNLKEVERPRIVVEIDIARSHGDLKENAEYHAAREKQAFIEARINE 64
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++ A+VID +++ ++++FG++V ++ ++ + Y +VG E++ GL+S+SSP
Sbjct: 65 LGLMLANAQVIDPASLPHNKVSFGSSVKILNLDTDKEFVYTLVGSMESNPSKGLISVSSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+AL+GK GD +S+ P GE +EIL+V +
Sbjct: 125 IAKALMGKSEGDEVSITLPNGENEFEILEVFY 156
>gi|241762247|ref|ZP_04760329.1| transcription elongation factor GreA [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|260753827|ref|YP_003226720.1| transcription elongation factor GreA [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|283856510|ref|YP_163350.2| transcription elongation factor GreA [Zymomonas mobilis subsp.
mobilis ZM4]
gi|7387716|sp|O50237|GREA_ZYMMO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|3820585|gb|AAC70357.1| transcription elongation factor [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241373294|gb|EER62913.1| transcription elongation factor GreA [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|258553190|gb|ACV76136.1| transcription elongation factor GreA [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|283775514|gb|AAV90239.2| transcription elongation factor GreA [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 158
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/156 (47%), Positives = 106/156 (67%), Gaps = 2/156 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KIP+ +G + EL R ERP+II AI EARA+GDLSENAEY AAKE Q E
Sbjct: 5 EKIPMLIEGQQMLMDEL-ARLHAERPKIIDAIEEARAHGDLSENAEYHAAKERQGQVEAM 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ++E ++RA VID T+SGD++ FGATV L++++ K YQIVG EA+ + G +S
Sbjct: 64 IGDIEGKLSRALVIDPKTLSGDKVIFGATVHLLDEDDKPVK-YQIVGQTEANAKGGRISY 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ RALIG+++ D I V+ P G++ Y I ++ +I
Sbjct: 123 NSPLGRALIGRKVDDEIEVSVPSGDRYYLISKIEFI 158
>gi|34557197|ref|NP_907012.1| transcription elongation factor GreA [Wolinella succinogenes DSM
1740]
gi|81833097|sp|Q7M9N2|GREA_WOLSU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|34482913|emb|CAE09912.1| TRANSCRIPTION ELONGATION FACTOR GREA TRANSCRIPT CLEAVAGE FACTORGREA
[Wolinella succinogenes]
Length = 162
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T G++K+Q+EL+ ++ ERP+I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MQKEPMTIYGYEKLQRELKELKEVERPQIVKEIDIARGHGDLKENAEYHAAKERQLFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ EL I++R +V+D +T++ ++I+FG+T +++ ++ Y IVG E++ G +S
Sbjct: 61 RINELSEILSRTQVVDPATITHEKISFGSTFKVMDLDTEFVYEYTIVGAPESNPDRGFIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+AR LIGK GD I+ P GE YE+L+V +
Sbjct: 121 FYSPLARQLIGKVPGDEINAKLPNGEIDYEVLEVYY 156
>gi|58578740|ref|YP_196952.1| transcription elongation factor greA [Ehrlichia ruminantium str.
Welgevonden]
gi|58616800|ref|YP_195999.1| transcription elongation factor greA [Ehrlichia ruminantium str.
Gardel]
gi|58416412|emb|CAI27525.1| Transcription elongation factor greA [Ehrlichia ruminantium str.
Gardel]
gi|58417366|emb|CAI26570.1| Transcription elongation factor greA [Ehrlichia ruminantium str.
Welgevonden]
Length = 166
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 115/163 (70%), Gaps = 6/163 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ P+T GF+K++ EL + E RP+IIK+ISEAR GDLSENAEY AA+E Q L E
Sbjct: 5 MNERFPITKAGFEKLELELESLKYE-RPQIIKSISEARELGDLSENAEYHAARERQGLVE 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV----EKNSGDKKNYQIVGDQEADVQ 116
++ ELE+ +RAEVID++ +SGD + FGATV++ + S D+ YQIVG+ E+D+
Sbjct: 64 SKIMELESKKSRAEVIDVANLSGDTVMFGATVTMSIYDEQTGSTDEVIYQIVGEYESDIS 123
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLWI 158
++SI SP+ +L+GK+ GD++ V P G+ + Y+I+++ +I
Sbjct: 124 KRMISIKSPLVISLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 166
>gi|313144398|ref|ZP_07806591.1| transcription elongation factor greA [Helicobacter cinaedi CCUG
18818]
gi|313129429|gb|EFR47046.1| transcription elongation factor greA [Helicobacter cinaedi CCUG
18818]
Length = 162
Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 108/152 (71%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T+ G++K+ EL+ ++ ERP+I+ I AR++GDL ENAEY AA+E Q E R+ E
Sbjct: 4 PMTNYGYEKLCAELKNLKEVERPKIVVEIDVARSHGDLKENAEYHAAREKQAFIEARINE 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++++A+VID +++ ++++FG++V ++ ++ + Y +VG E++ GL+S+SSP
Sbjct: 64 LGLMLSQAQVIDPASLKHNKVSFGSSVKILNLDTDKEFVYTLVGSMESNPSKGLISVSSP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+AL+GK+ GD +S+ P GE +EIL+V +
Sbjct: 124 IAKALMGKKQGDEVSIMLPSGENEFEILEVFY 155
>gi|254369654|ref|ZP_04985664.1| transcriptional elongation factor [Francisella tularensis subsp.
holarctica FSC022]
gi|157122613|gb|EDO66742.1| transcriptional elongation factor [Francisella tularensis subsp.
holarctica FSC022]
Length = 160
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR
Sbjct: 4 DRVPMTPAGKQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63
Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S
Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ +P+ARALI KE GD I+++ P G+ TYEI+ V +
Sbjct: 124 VVAPLARALIKKEEGDEITLDTPKGKVTYEIVAVEY 159
>gi|57339826|gb|AAW49900.1| hypothetical protein FTT1313 [synthetic construct]
Length = 195
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR
Sbjct: 30 DRVPMTPAGEQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 89
Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S
Sbjct: 90 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 149
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ +P+ARALI KE GD I+++ P G+ TYEI+ V +
Sbjct: 150 VVAPLARALIKKEEGDEITLDTPKGKVTYEIVAVEY 185
>gi|326559681|gb|EGE10092.1| transcription elongation factor GreA [Moraxella catarrhalis
46P47B1]
Length = 158
Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G ++ EL+ + ERPRI AI+EAR +GDL ENAEY AA+E Q E R+
Sbjct: 3 RYPMTPEGHKALEDELKQLKTVERPRITTAIAEAREHGDLKENAEYHAAREQQGFCEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A++ID + + + R+ FG TV L + G ++ Y+IVGD EAD + G +S+
Sbjct: 63 RDIEAKLSGAQIIDPAKLPKEGRVVFGVTVVLENMDDGARRRYKIVGDDEADFKVGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SPIAR LIGK GD + P G +EIL+V++
Sbjct: 123 NSPIARGLIGKSEGDEAKIQTPSGLAEFEILEVIY 157
>gi|56708370|ref|YP_170266.1| transcription elongation factor GreA [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89256763|ref|YP_514125.1| transcription elongation factor GreA [Francisella tularensis subsp.
holarctica LVS]
gi|110670840|ref|YP_667397.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis FSC198]
gi|115315154|ref|YP_763877.1| transcriptional elongation factor [Francisella tularensis subsp.
holarctica OSU18]
gi|118497261|ref|YP_898311.1| transcriptional elongation factor [Francisella tularensis subsp.
novicida U112]
gi|134302355|ref|YP_001122324.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis WY96-3418]
gi|156502925|ref|YP_001428990.1| transcription elongation factor GreA [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167010904|ref|ZP_02275835.1| transcriptional elongation factor [Francisella tularensis subsp.
holarctica FSC200]
gi|187931963|ref|YP_001891948.1| transcriptional elongation factor [Francisella tularensis subsp.
mediasiatica FSC147]
gi|194323563|ref|ZP_03057340.1| transcription elongation factor GreA family protein [Francisella
tularensis subsp. novicida FTE]
gi|208779054|ref|ZP_03246400.1| transcription elongation factor GreA family protein [Francisella
novicida FTG]
gi|224457500|ref|ZP_03665973.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254368054|ref|ZP_04984074.1| transcriptional elongation factor [Francisella tularensis subsp.
holarctica 257]
gi|254370993|ref|ZP_04986996.1| hypothetical protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254372634|ref|ZP_04988123.1| transcriptional elongation factor [Francisella tularensis subsp.
novicida GA99-3549]
gi|254875193|ref|ZP_05247903.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis MA00-2987]
gi|290954459|ref|ZP_06559080.1| transcription elongation factor GreA [Francisella tularensis subsp.
holarctica URFT1]
gi|295312121|ref|ZP_06802932.1| transcription elongation factor GreA [Francisella tularensis subsp.
holarctica URFT1]
gi|81597269|sp|Q5NFC6|GREA_FRATT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|122324847|sp|Q0BKZ4|GREA_FRATO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123094496|sp|Q2A2C7|GREA_FRATH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123359419|sp|Q14GS9|GREA_FRAT1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|259647642|sp|A7NDI1|GREA_FRATF RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|259647643|sp|B2SDF5|GREA_FRATM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|259647644|sp|A0Q5P2|GREA_FRATN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|259647645|sp|A4IZ52|GREA_FRATW RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54113791|gb|AAV29529.1| NT02FT0408 [synthetic construct]
gi|56604862|emb|CAG45946.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89144594|emb|CAJ79913.1| transcriptional elongation factor [Francisella tularensis subsp.
holarctica LVS]
gi|110321173|emb|CAL09329.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis FSC198]
gi|115130053|gb|ABI83240.1| transcription elongation factor GreA [Francisella tularensis subsp.
holarctica OSU18]
gi|118423167|gb|ABK89557.1| transcriptional elongation factor [Francisella novicida U112]
gi|134050132|gb|ABO47203.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134253864|gb|EBA52958.1| transcriptional elongation factor [Francisella tularensis subsp.
holarctica 257]
gi|151569234|gb|EDN34888.1| hypothetical protein FTBG_01615 [Francisella tularensis subsp.
tularensis FSC033]
gi|151570361|gb|EDN36015.1| transcriptional elongation factor [Francisella novicida GA99-3549]
gi|156253528|gb|ABU62034.1| transcriptional elongation factor, GreA/GreB family protein
[Francisella tularensis subsp. holarctica FTNF002-00]
gi|187712872|gb|ACD31169.1| transcriptional elongation factor [Francisella tularensis subsp.
mediasiatica FSC147]
gi|194322418|gb|EDX19899.1| transcription elongation factor GreA family protein [Francisella
tularensis subsp. novicida FTE]
gi|208744854|gb|EDZ91152.1| transcription elongation factor GreA family protein [Francisella
novicida FTG]
gi|254841192|gb|EET19628.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159989|gb|ADA79380.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis NE061598]
gi|328676750|gb|AEB27620.1| Transcription elongation factor GreA [Francisella cf. novicida Fx1]
Length = 160
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR
Sbjct: 4 DRVPMTPAGEQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63
Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S
Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ +P+ARALI KE GD I+++ P G+ TYEI+ V +
Sbjct: 124 VVAPLARALIKKEEGDEITLDTPKGKVTYEIVAVEY 159
>gi|261250302|ref|ZP_05942878.1| transcription elongation factor GreA [Vibrio orientalis CIP 102891]
gi|260939418|gb|EEX95404.1| transcription elongation factor GreA [Vibrio orientalis CIP 102891]
Length = 157
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 116/158 (73%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQQLRVELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EA++++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDCDTEEEKTYQIVGDDEANIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD + ++ PGG++ +EI +V ++
Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGDRDFEIDRVEYL 157
>gi|260771823|ref|ZP_05880741.1| transcription elongation factor GreA [Vibrio metschnikovii CIP
69.14]
gi|260613115|gb|EEX38316.1| transcription elongation factor GreA [Vibrio metschnikovii CIP
69.14]
Length = 157
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 117/158 (74%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +K+ ++ R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRG-EKLLRDELERLLKLRPKITQAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VIDI+ + ++ FG+TVSL++ ++ ++K YQIVGD EA++++G +
Sbjct: 60 QIRDIEYKLSVAQVIDIAKIENTGKVIFGSTVSLIDVDTDEEKRYQIVGDDEAEIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD ++++ PGG+K +EI +V ++
Sbjct: 120 SVSSPIARGLIGKMEGDEVTISTPGGDKVFEIDKVDYL 157
>gi|262369443|ref|ZP_06062771.1| transcription elongation factor [Acinetobacter johnsonii SH046]
gi|262315511|gb|EEY96550.1| transcription elongation factor [Acinetobacter johnsonii SH046]
Length = 158
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL + ERPRII AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPQGKLALEKELHQLKSIERPRIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A+VID+ + + R+ FG TV++ ++ ++K Y IVGD EAD + +
Sbjct: 61 RVQDIEGKLGAAQVIDVKELEQNGRVVFGVTVTIENLDTEEQKTYMIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK GD + P GE YEI++V +I
Sbjct: 121 SVNSPIARGLLGKSEGDEAKIQTPQGEVEYEIVKVAYI 158
>gi|315126858|ref|YP_004068861.1| transcription elongation factor greA [Pseudoalteromonas sp. SM9913]
gi|315015372|gb|ADT68710.1| transcription elongation factor greA [Pseudoalteromonas sp. SM9913]
Length = 158
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G ++ EL + RP+I+ I++AR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTVRGAKLLRDELNELKTVTRPKIVSDIADAREHGDLKENAEYHAAREQQGFCEGRIQ 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ ++ID++ M ++ FG TV++V + + YQIVGD EAD++S L+S++
Sbjct: 64 EIEAKLSNMQMIDVTKMPNTGKVIFGTTVTIVNVETDAEVKYQIVGDDEADIKSNLISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGK+ D + + P G+ YEI++V +I
Sbjct: 124 SPIARGLIGKQADDAVIIKTPKGDVEYEIIEVEYI 158
>gi|294142073|ref|YP_003558051.1| transcription elongation factor GreA [Shewanella violacea DSS12]
gi|293328542|dbj|BAJ03273.1| transcription elongation factor GreA [Shewanella violacea DSS12]
Length = 158
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G +++++EL + E+RP I +AI AR GDL ENAEY AA+E Q + E
Sbjct: 1 MNKVPMTVVGAEQLRKELTHLKFEQRPSITQAIGTARELGDLKENAEYHAAREEQGICEA 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ ++ID++ M + RI FG TV+++ + ++ Y+IVG+ EA+++ L+
Sbjct: 61 RIRDIEGKLSNVQIIDVTKMENNGRIIFGTTVTILNVETEEESTYRIVGEDEANIKDNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK L D +++ PGG YEI+ V +I
Sbjct: 121 SVTSPIARGLVGKNLDDEVNIQTPGGITEYEIIAVKYI 158
>gi|315453431|ref|YP_004073701.1| transcription elongation factor [Helicobacter felis ATCC 49179]
gi|315132483|emb|CBY83111.1| transcription elongation factor [Helicobacter felis ATCC 49179]
Length = 163
Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 100/152 (65%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P++ G++KI EL+ ++ ERP +I+ I AR +GDL ENAEY AAK+ Q + R+AE
Sbjct: 4 PMSKYGYEKICAELKRLKEVERPCVIQEIDRAREHGDLKENAEYHAAKDKQAFIDARIAE 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + A+VID ST+S +++FG+TV ++ ++ + Y IVG E+D GL+S SP
Sbjct: 64 LSQTLANAQVIDPSTLSHQKVSFGSTVKILNLDNDKEFCYTIVGRMESDPSRGLISFGSP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA++L+GK+ GD + V P GE +EIL + +
Sbjct: 124 IAKSLMGKQKGDEVIVVLPSGENEFEILDIFY 155
>gi|254374096|ref|ZP_04989578.1| transcriptional elongation factor [Francisella novicida GA99-3548]
gi|151571816|gb|EDN37470.1| transcriptional elongation factor [Francisella novicida GA99-3548]
Length = 160
Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR
Sbjct: 4 DRVPMTPAGEQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63
Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S
Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ +P+ARALI KE GD I+++ P G TYEI+ V +
Sbjct: 124 VVAPLARALIKKEEGDEITLDTPKGRVTYEIVAVEY 159
>gi|222824365|ref|YP_002575939.1| transcription elongation factor GreA [Campylobacter lari RM2100]
gi|254799551|sp|B9KDP9|GREA_CAMLR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|222539586|gb|ACM64687.1| transcription elongation factor GreA [Campylobacter lari RM2100]
Length = 161
Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/156 (40%), Positives = 106/156 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P++ G++K+++EL ++ ERP++++ I AR++GDL ENAEY AA+E Q EG
Sbjct: 1 MQKEPMSKYGYEKLEKELEHLKKVERPKVVEEIDIARSHGDLKENAEYHAAREKQAFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AEL ++I+RA++ID ++ D + FG+ V + + S + Y IVG E +++ G +S
Sbjct: 61 KIAELGDLISRAQIIDPASYEHDSVKFGSCVVVEDLESEKQSTYTIVGVNEGNLEKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIARA++GK+ GD V P GE +EI+ + +
Sbjct: 121 INSPIARAMLGKKEGDDFKVRLPKGESEFEIISIEY 156
>gi|153835620|ref|ZP_01988287.1| transcription elongation factor GreA [Vibrio harveyi HY01]
gi|148867771|gb|EDL67020.1| transcription elongation factor GreA [Vibrio harveyi HY01]
Length = 157
Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 111/158 (70%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G ++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQLLRTELD-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E + +VID+++M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKPSVVQVIDVTSMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIAR LIGK GD + + PGG K +EI V +I
Sbjct: 120 SISSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157
>gi|305432833|ref|ZP_07401991.1| transcription elongation factor GreA [Campylobacter coli JV20]
gi|304443987|gb|EFM36642.1| transcription elongation factor GreA [Campylobacter coli JV20]
Length = 161
Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 102/154 (66%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+
Sbjct: 3 KEPMSQFGYDKLSAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQTLIESRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL ++I RA++ID S+ D + FG++V +++ ++ + Y +VG E D+ G +SI+
Sbjct: 63 AELSDLIARAQIIDPSSYEHDSVKFGSSVVIMDLDTEKENKYTLVGTCEGDLDKGYISIA 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA+A++GK+ GD V P GE +EI+ + +
Sbjct: 123 SPIAKAMLGKKEGDEFKVRLPKGESEFEIISINY 156
>gi|88857845|ref|ZP_01132487.1| transcription elongation factor greA [Pseudoalteromonas tunicata
D2]
gi|88819462|gb|EAR29275.1| transcription elongation factor greA [Pseudoalteromonas tunicata
D2]
Length = 158
Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 107/156 (68%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G + ++ EL + +RP+II I+ AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 QIPMTVRGVELLRAELNELKTVKRPKIIADIAVAREHGDLKENAEYHAAREEQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ +VID++ M+ + ++ FG TV++V + + Y+IVGD EA++++ L+S+
Sbjct: 63 QEIEAKLSNVQVIDVTKMANNGKVIFGTTVTIVNVETDAEVTYRIVGDDEANIKNNLISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GK + D ++++ P G YEI+ V +I
Sbjct: 123 NSPIARGLVGKSVDDAVTISTPKGNVEYEIIAVEYI 158
>gi|51246041|ref|YP_065925.1| transcription elongation factor (GreA) [Desulfotalea psychrophila
LSv54]
gi|81641701|sp|Q6AL57|GREA_DESPS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|50877078|emb|CAG36918.1| probable transcription elongation factor (GreA) [Desulfotalea
psychrophila LSv54]
Length = 161
Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 107/155 (69%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M+D+IP++ +G K+++EL + ER ++KAI AR +GDL ENAEY AAKE Q + E
Sbjct: 1 MIDRIPMSVRGNKKLKEELLRLTRVERLDVVKAIEVAREHGDLKENAEYHAAKERQGMIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +L++ + RAEVID +S R+ FG V L++ ++ ++ YQ++G +E++V++G +
Sbjct: 61 ARIMDLKDKLGRAEVIDCLQVSCKRVVFGTVVVLLDLDTDEEVTYQLLGPEESEVKAGSI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S+ SPI R+++ KE GD + PGG + +E++++
Sbjct: 121 SVLSPIGRSMLSKEEGDEVVTKTPGGTREFEVVEI 155
>gi|82523822|emb|CAI78564.1| transcription elongation factor GreA [uncultured candidate division
OP8 bacterium]
Length = 156
Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 109/156 (69%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++ P+T +G K++ EL+ ++ +RP +KAI EAR +GDL ENA+++ AK+ Q + G
Sbjct: 1 MERYPITPEGLKKLEAELKRLREVDRPANVKAIEEARGHGDLRENADFKCAKDEQAMIVG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+A L+ I+ A VID S +SG+R+ FGA V L ++G+ Y++VG+ EAD++ G +S
Sbjct: 61 RIAYLQGRISHAAVIDPSKLSGNRVVFGARVFLKNLDTGEPIVYRLVGEDEADIEQGSIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+AR LI +E+G+ + P G K++EI+++ +
Sbjct: 121 ITSPLARGLIRREVGEQAKIAVPSGIKSFEIVKIEF 156
>gi|15599949|ref|NP_253443.1| transcription elongation factor GreA [Pseudomonas aeruginosa PAO1]
gi|107103852|ref|ZP_01367770.1| hypothetical protein PaerPA_01004923 [Pseudomonas aeruginosa PACS2]
gi|116052902|ref|YP_793219.1| transcription elongation factor GreA [Pseudomonas aeruginosa
UCBPP-PA14]
gi|152984538|ref|YP_001350797.1| transcription elongation factor GreA [Pseudomonas aeruginosa PA7]
gi|218893850|ref|YP_002442719.1| transcription elongation factor GreA [Pseudomonas aeruginosa
LESB58]
gi|254238509|ref|ZP_04931832.1| transcription elongation factor GreA [Pseudomonas aeruginosa C3719]
gi|254244343|ref|ZP_04937665.1| transcription elongation factor GreA [Pseudomonas aeruginosa 2192]
gi|296391582|ref|ZP_06881057.1| transcription elongation factor GreA [Pseudomonas aeruginosa PAb1]
gi|313109736|ref|ZP_07795676.1| transcription elongation factor GreA [Pseudomonas aeruginosa 39016]
gi|25453009|sp|Q9HV46|GREA_PSEAE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|9951018|gb|AAG08141.1|AE004889_4 transcription elongation factor GreA [Pseudomonas aeruginosa PAO1]
gi|115588123|gb|ABJ14138.1| transcription elongation factor GreA [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126170440|gb|EAZ55951.1| transcription elongation factor GreA [Pseudomonas aeruginosa C3719]
gi|126197721|gb|EAZ61784.1| transcription elongation factor GreA [Pseudomonas aeruginosa 2192]
gi|150959696|gb|ABR81721.1| transcription elongation factor GreA [Pseudomonas aeruginosa PA7]
gi|218774078|emb|CAW29894.1| transcription elongation factor GreA [Pseudomonas aeruginosa
LESB58]
gi|310882178|gb|EFQ40772.1| transcription elongation factor GreA [Pseudomonas aeruginosa 39016]
Length = 158
Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++E++ + RP+I +AI+EAR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KFPMTVQGARALEEEVKHLKGVLRPQISQAIAEARELGDLKENAEYHAAREQQGMVEARI 62
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A+VID++ + ++ FG TV + + + YQIVGD EAD++ G +S+
Sbjct: 63 RDIEAKLSNAQVIDVTAIPHSGKVIFGTTVDIANVETDETVTYQIVGDDEADIKGGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIARALIGK GD + V PGG+ YEI++V I
Sbjct: 123 NSPIARALIGKTEGDAVLVRTPGGDVEYEIVEVRHI 158
>gi|154175152|ref|YP_001408890.1| transcription elongation factor GreA [Campylobacter curvus 525.92]
gi|112803753|gb|EAU01097.1| biopolymer transport ExbB protein [Campylobacter curvus 525.92]
Length = 162
Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 104/152 (68%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++KI+ EL+ +Q +RP+I+ I AR++GDL ENAEY AAKE Q + R+AE
Sbjct: 4 PMTIYGYEKIEAELKDLRQVQRPQIVIEIDIARSHGDLKENAEYHAAKEKQAFIDTRIAE 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++ AEVID S+ DR+ FG++V++++ + + Y IVG E+++ GL+SI+SP
Sbjct: 64 LSTLLANAEVIDPSSYEHDRVRFGSSVTIMDVETEIEHTYTIVGISESNLDRGLISINSP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+AR L+GK GD +++N P G E+++V +
Sbjct: 124 LARQLLGKAEGDEVALNLPNGRSDVEVVEVCY 155
>gi|86151410|ref|ZP_01069625.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 260.94]
gi|86153776|ref|ZP_01071979.1| transcription elongation factor greA [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|121612714|ref|YP_001000001.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 81-176]
gi|167004957|ref|ZP_02270715.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 81-176]
gi|315123863|ref|YP_004065867.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|166200654|sp|A1VY10|GREA_CAMJJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|85841757|gb|EAQ59004.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85842737|gb|EAQ59949.1| transcription elongation factor greA [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87250181|gb|EAQ73139.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 81-176]
gi|315017585|gb|ADT65678.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
Length = 161
Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 102/154 (66%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+
Sbjct: 3 KEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIESRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +SI+
Sbjct: 63 AELSDLLARAQVIDPSSYEHDSVKFGSSVVIIDLDTEKESKYTLVGICEGDLDKGYISIA 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA+A++GK+ GD V P GE +EIL + +
Sbjct: 123 SPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156
>gi|49080972|gb|AAT50079.1| PA4755 [synthetic construct]
Length = 159
Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++E++ + RP+I +AI+EAR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KFPMTVQGARALEEEVKHLKGVLRPQISQAIAEARELGDLKENAEYHAAREQQGMVEARI 62
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A+VID++ + ++ FG TV + + + YQIVGD EAD++ G +S+
Sbjct: 63 RDIEAKLSNAQVIDVTAIPHSGKVIFGTTVDIANVETDETVTYQIVGDDEADIKGGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIARALIGK GD + V PGG+ YEI++V I
Sbjct: 123 NSPIARALIGKTEGDAVLVRTPGGDVEYEIVEVRHI 158
>gi|78357555|ref|YP_389004.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78219960|gb|ABB39309.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 235
Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 107/156 (68%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP++ +GF+ ++++L R ++ERP +I+AI EAR GDLSENA Y AA+E Q + E
Sbjct: 73 MSSIPISVEGFELVKRDLE-RLKQERPAVIQAIKEAREEGDLSENAGYDAARERQGMLEA 131
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +E+ + R VID+ T+ G+R+ +GAT+ L + +G+ + Y +VG E D G +S
Sbjct: 132 RIGNIESRMARFNVIDMRTLGGERVTYGATIELEDLETGEMRVYTLVGPDETDYVKGSIS 191
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+A+A++GKE GD + V+AP G+ YEI+ V +
Sbjct: 192 VLSPVAKAVLGKEEGDEVVVDAPRGKIHYEIVSVSF 227
>gi|303248722|ref|ZP_07334975.1| GreA/GreB family elongation factor [Desulfovibrio fructosovorans
JJ]
gi|302489887|gb|EFL49815.1| GreA/GreB family elongation factor [Desulfovibrio fructosovorans
JJ]
Length = 162
Score = 133 bits (335), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D IP+T +GF ++++EL R ++ERP +I AI EAR GDL ENA Y AA+E Q + E
Sbjct: 1 MDSIPITVQGFKRLERELE-RLKKERPEVILAIKEAREEGDLRENAGYDAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +E+ + R VID++T+ G+++ FGATV + + ++GD K Y ++G EA+ G +S
Sbjct: 60 RINFIESRMPRFNVIDLATLDGEQVIFGATVEIEDVDTGDVKKYTLLGPDEAEPSKGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ +AL+GK GD I V AP G+ YEI+ + +
Sbjct: 120 ILSPVGQALLGKYEGDEIVVEAPRGKINYEIISIAF 155
>gi|257454668|ref|ZP_05619924.1| transcription elongation factor GreA [Enhydrobacter aerosaccus
SK60]
gi|257447978|gb|EEV22965.1| transcription elongation factor GreA [Enhydrobacter aerosaccus
SK60]
Length = 158
Score = 133 bits (335), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 102/155 (65%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +++EL+ + +RPRI AI+EAR +GDL ENAEY AA+E Q E R+
Sbjct: 3 RYPMTPQGHAALEEELKQLKTVDRPRITAAIAEAREHGDLKENAEYHAAREQQGFCEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + AEVID + + R+ FG TV + ++ ++K Y+IVGD EAD ++ +SI
Sbjct: 63 RDIEAKLGGAEVIDPLKLPQEGRVVFGVTVVIENLDTEEQKRYKIVGDDEADFKANKISI 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SPIAR LIGK GD + P GE YEI++VL+
Sbjct: 123 NSPIARGLIGKSEGDEAKIQTPSGEVEYEIVEVLY 157
>gi|89072566|ref|ZP_01159138.1| transcription elongation factor GreA [Photobacterium sp. SKA34]
gi|90580532|ref|ZP_01236337.1| transcription elongation factor GreA [Vibrio angustum S14]
gi|89051670|gb|EAR57123.1| transcription elongation factor GreA [Photobacterium sp. SKA34]
gi|90438190|gb|EAS63376.1| transcription elongation factor GreA [Photobacterium angustum S14]
Length = 157
Score = 133 bits (335), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/158 (41%), Positives = 111/158 (70%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K++ EL + RP I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGEQKLRSELEVLLKR-RPLISQAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A++ID+ TM ++ FG T++L++ ++ ++ Y IVGD EA+++ L+
Sbjct: 60 QIRDIEYKLSVAQIIDVKTMPNTGKVIFGTTITLLDLDTDNEVTYCIVGDDEANIKENLI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +++ PGG+K +EI++V +I
Sbjct: 120 SVNSPIARGLIGKMEGDEVAITTPGGQKEFEIVEVKYI 157
>gi|315932570|gb|EFV11502.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 327]
Length = 161
Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 102/154 (66%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+
Sbjct: 3 KEPMSQFGYDKLAAELKDLKDNQRPTVVIEIDTARSHGDLKENAEYHAAREKQALIESRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +SI+
Sbjct: 63 AELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGDLDKGYISIA 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA+A++GK+ GD V P GE +EIL + +
Sbjct: 123 SPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156
>gi|152998029|ref|YP_001342864.1| transcription elongation factor GreA [Marinomonas sp. MWYL1]
gi|150838953|gb|ABR72929.1| transcription elongation factor GreA [Marinomonas sp. MWYL1]
Length = 158
Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T +G ++++EL + RPR+I I+ AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 KVPMTVEGEARLREELNHLKTVVRPRVIADIATAREHGDLKENAEYHAAREEQGFAEGRI 62
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E + ++VID+ + + ++ FG TV+L ++ + Y+IVGD EADV+ +S
Sbjct: 63 KEIEGKLADSQVIDVKALPASSKVIFGTTVTLFNVDTEETVTYKIVGDDEADVKEKKISY 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIA+A+IGKE GD +++ P GE YEI +V ++
Sbjct: 123 ASPIAKAIIGKEEGDEVAIQVPSGEVVYEIEKVEYL 158
>gi|332703955|ref|ZP_08424043.1| transcription elongation factor GreA [Desulfovibrio africanus str.
Walvis Bay]
gi|332554104|gb|EGJ51148.1| transcription elongation factor GreA [Desulfovibrio africanus str.
Walvis Bay]
Length = 163
Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP++ +GF ++++EL +++RP II+AI EAR GDL EN+ Y AA+E L E
Sbjct: 1 MSSIPISVEGFQRLEKEL-HNLKKDRPEIIQAIKEAREEGDLRENSGYHAARERLGLLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ +E+ + + +ID++T+ GD+ FGATV + + ++GDKK Y ++G EA+ G +S
Sbjct: 60 RISFIESRMPQFNIIDLATLGGDKAIFGATVEIEDMDTGDKKRYTLLGPDEAEPTKGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ +AL+GKE GD I VNAP G YEI+ + +
Sbjct: 120 ILSPVGQALLGKEAGDEIVVNAPRGRIQYEIISIRF 155
>gi|90412476|ref|ZP_01220479.1| transcription elongation factor GreA [Photobacterium profundum
3TCK]
gi|90326513|gb|EAS42919.1| transcription elongation factor GreA [Photobacterium profundum
3TCK]
Length = 157
Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 107/158 (67%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +++EL + RP I KAI EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGEQTLREELEVLLKR-RPIISKAIGEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ ++VID++ M ++ FG TV L++ N+ D+ Y IVGD EAD++ L+
Sbjct: 60 QIRDIEYKLSVSQVIDVTKMENTGKVIFGTTVKLIDINTDDEVMYCIVGDDEADIKKNLI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +S+ PGG K +EI QV +I
Sbjct: 120 SVNSPIARGLIGKLEGDEVSIFTPGGVKEFEIEQVQYI 157
>gi|86149591|ref|ZP_01067821.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|283955709|ref|ZP_06373200.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
1336]
gi|85839859|gb|EAQ57118.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|283792664|gb|EFC31442.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
1336]
Length = 161
Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 102/154 (66%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+
Sbjct: 3 KEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIESRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +SI+
Sbjct: 63 AELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGDLDKGYISIA 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA+A++GK+ GD V P GE +EIL + +
Sbjct: 123 SPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156
>gi|50085902|ref|YP_047412.1| transcription elongation factor GreA [Acinetobacter sp. ADP1]
gi|49531878|emb|CAG69590.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Acinetobacter sp. ADP1]
Length = 158
Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + ++ID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +
Sbjct: 61 RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK GD + P GE YEI+ V +I
Sbjct: 121 SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI 158
>gi|323144905|ref|ZP_08079468.1| transcription elongation factor GreA [Succinatimonas hippei YIT
12066]
gi|322415303|gb|EFY06074.1| transcription elongation factor GreA [Succinatimonas hippei YIT
12066]
Length = 191
Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 109/161 (67%), Gaps = 5/161 (3%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++ P+T++G +++EL + ERPRI+ AI+EAR++GDLSENAEY AAKE Q L E
Sbjct: 29 MEQTPMTARGEMLLRKELERLKLVERPRIVAAIAEARSHGDLSENAEYDAAKEEQGLCEA 88
Query: 62 RMAELENIITRAEVIDISTMSGD-----RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
R+ ++E + A +ID++ + ++ FG TV++++ ++ + Y+IVG+ EAD+Q
Sbjct: 89 RIKDIEAKLATANIIDVTKLKPAGGAPLKVVFGCTVTVIDVDTDKEVTYKIVGEDEADIQ 148
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S L+S +PIA+ L+GK GD +N P G+ TYEI ++ +
Sbjct: 149 SNLISYKTPIAKGLLGKIEGDEAQINIPRGQVTYEIAEIKY 189
>gi|303327141|ref|ZP_07357583.1| transcription elongation factor GreA [Desulfovibrio sp. 3_1_syn3]
gi|302863129|gb|EFL86061.1| transcription elongation factor GreA [Desulfovibrio sp. 3_1_syn3]
Length = 162
Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 104/153 (67%), Gaps = 1/153 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP++ +G+ K+++EL R + ERP II+AI EAR GDL ENA Y AA+E Q + E R+
Sbjct: 4 IPISVQGYKKLEEEL-ARLKSERPAIIQAIKEAREEGDLRENAGYDAARERQGMAEARIK 62
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E+ + +V+D+ +SGD++ FG+TV + + +SG+ +N+ I+G EAD G +S S
Sbjct: 63 YIESRLALYQVVDLDKLSGDKVIFGSTVEVEDVDSGESRNFTILGPDEADPSKGSISFLS 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ +AL+GKE GD ++V P G TYE++ + +
Sbjct: 123 PVGQALLGKEEGDEVTVEIPRGRVTYEVVSIAF 155
>gi|299769004|ref|YP_003731030.1| transcription elongation factor GreA [Acinetobacter sp. DR1]
gi|298699092|gb|ADI89657.1| transcription elongation factor GreA [Acinetobacter sp. DR1]
Length = 158
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 RYPMTPEGKIALEKELQHLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A+ ID+ T+ + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+
Sbjct: 63 QDIEGKLGAAQEIDVKTLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+ K GD + + P GE YEI+ V ++
Sbjct: 123 NSPIARGLLSKSEGDEVKIVTPQGEVEYEIVSVEYL 158
>gi|255318889|ref|ZP_05360115.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Acinetobacter radioresistens SK82]
gi|262378856|ref|ZP_06072013.1| transcription elongation factor GreB [Acinetobacter radioresistens
SH164]
gi|255304145|gb|EET83336.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Acinetobacter radioresistens SK82]
gi|262300141|gb|EEY88053.1| transcription elongation factor GreB [Acinetobacter radioresistens
SH164]
Length = 158
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 102/156 (65%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +++EL + ERPRI AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 RYPMTPEGKTALEKELHQLKTVERPRITAAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A+VIDI + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+
Sbjct: 63 QDIEGKLGAAQVIDIKDLEQNGRVVFGVTVTIENLDTEEQKTYKIVGDDEADFKINKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GK GD + P GE YEI+ V +I
Sbjct: 123 NSPIARGLLGKSEGDEAKIVTPQGEVEYEIVSVEYI 158
>gi|37680902|ref|NP_935511.1| transcription elongation factor GreA [Vibrio vulnificus YJ016]
gi|37199652|dbj|BAC95482.1| transcription elongation factor [Vibrio vulnificus YJ016]
Length = 165
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G +++ ++ R + RP I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 9 MEKVPMTARG-EQLLRKELERLLKRRPLITEAIAEARELGDLKENAEYHAAREEQGICEA 67
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID+S M + ++ FGATV+L++ ++ ++K YQIVGD EAD++SG +
Sbjct: 68 QIRDIEYKLSVAQVIDVSKMENNGKVIFGATVTLIDCDTEEEKTYQIVGDDEADIKSGRI 127
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIAR LIGK GD ++++ PGG K +EI V +
Sbjct: 128 SVNSPIARGLIGKMEGDEVAISTPGGMKDFEIDSVEY 164
>gi|27365048|ref|NP_760576.1| transcription elongation factor GreA [Vibrio vulnificus CMCP6]
gi|320155431|ref|YP_004187810.1| transcription elongation factor GreA [Vibrio vulnificus MO6-24/O]
gi|31076695|sp|Q8DBW9|GREA_VIBVU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|27361194|gb|AAO10103.1| Transcription elongation factor GreA [Vibrio vulnificus CMCP6]
gi|319930743|gb|ADV85607.1| transcription elongation factor GreA [Vibrio vulnificus MO6-24/O]
Length = 157
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G +++ ++ R + RP I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTARG-EQLLRKELERLLKRRPLITEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID+S M + ++ FGATV+L++ ++ ++K YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVSKMENNGKVIFGATVTLIDCDTEEEKTYQIVGDDEADIKSGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIAR LIGK GD ++++ PGG K +EI V +
Sbjct: 120 SVNSPIARGLIGKMEGDEVAISTPGGMKDFEIDSVEY 156
>gi|157164259|ref|YP_001466449.1| transcription elongation factor GreA [Campylobacter concisus 13826]
gi|112801597|gb|EAT98941.1| transcription elongation factor GreA [Campylobacter concisus 13826]
Length = 161
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 103/152 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++KI+ EL+ + +RP+I+ I AR++GDL ENAEY AAKE Q + R+AE
Sbjct: 4 PMTMHGYEKIEAELKDLRLVQRPQIVTEIDIARSHGDLKENAEYHAAKEKQAFIDARIAE 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++ AEVID S+ DR+ FG++V+++++ + + Y IVG E+D+ G +SI+SP
Sbjct: 64 LSALLANAEVIDPSSYEHDRVRFGSSVTIMDEETEVEHTYTIVGVSESDLDKGYISINSP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ L+GK GD +++N P G EI+++ +
Sbjct: 124 LAKQLLGKAEGDEVALNLPKGRSDVEIVKICY 155
>gi|153951319|ref|YP_001398665.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
doylei 269.97]
gi|189042239|sp|A7H585|GREA_CAMJD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|152938765|gb|ABS43506.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
doylei 269.97]
Length = 161
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 101/154 (65%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+
Sbjct: 3 KEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIESRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
EL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +SI+
Sbjct: 63 VELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGDLDKGYISIA 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARA++GK+ GD V P GE +EIL + +
Sbjct: 123 SPIARAMLGKKEGDDFKVRLPKGESEFEILSINY 156
>gi|88799656|ref|ZP_01115231.1| transcription elongation factor GreA [Reinekea sp. MED297]
gi|88777550|gb|EAR08750.1| transcription elongation factor GreA [Reinekea sp. MED297]
Length = 158
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +Q EL+ + +RP +I AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 RYPMTVEGELALQAELKELKSVKRPEVIAAIAEAREHGDLKENAEYHAAREQQGFIEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
A++E ++ ++VI++ + ++ FG TV+L+ + Y+IVGD EA+V+ +S+
Sbjct: 63 ADIEGKLSASQVINVHDIPNTGKVIFGTTVTLLNTETDQGVTYKIVGDDEANVKVNKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
+SPIARALIGKE GD+++V PGG YEI
Sbjct: 123 NSPIARALIGKEEGDVVNVKTPGGTVEYEI 152
>gi|313141419|ref|ZP_07803612.1| transcription elongation factor greA [Helicobacter canadensis MIT
98-5491]
gi|313130450|gb|EFR48067.1| transcription elongation factor greA [Helicobacter canadensis MIT
98-5491]
Length = 163
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 102/152 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ E
Sbjct: 7 PMTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINE 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++ A VID ST++ D+++FG+T++L + +S ++ Y IVG E++ GL+S SP
Sbjct: 67 LTQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSP 126
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ L+GK +GD +++ P G+ YEIL++ +
Sbjct: 127 LAKQLLGKVVGDEVTIQLPKGKVDYEILEICY 158
>gi|224417876|ref|ZP_03655882.1| transcription elongation factor GreA [Helicobacter canadensis MIT
98-5491]
Length = 159
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 102/152 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ E
Sbjct: 3 PMTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINE 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++ A VID ST++ D+++FG+T++L + +S ++ Y IVG E++ GL+S SP
Sbjct: 63 LTQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ L+GK +GD +++ P G+ YEIL++ +
Sbjct: 123 LAKQLLGKVVGDEVTIQLPKGKVDYEILEICY 154
>gi|57242062|ref|ZP_00370002.1| transcription elongation factor Cj0287c [Campylobacter upsaliensis
RM3195]
gi|57017254|gb|EAL54035.1| transcription elongation factor Cj0287c [Campylobacter upsaliensis
RM3195]
Length = 161
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 105/156 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K ++S GF+K+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E
Sbjct: 1 MEKEAMSSFGFEKLSAELKDLKDNQRPAVVVEIDVARSHGDLKENAEYHAAREKQALIES 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL I++RA+VID ++ + + FG++V +++ S + Y +VG E+D++ G +S
Sbjct: 61 RIAELGGILSRAQVIDPASYEHESVKFGSSVLIMDLESEKESKYTLVGTCESDLEKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+ARA++GK+ GD V P GE +EIL V +
Sbjct: 121 IASPLARAMLGKKEGDEFKVRLPKGESEFEILSVTY 156
>gi|330807473|ref|YP_004351935.1| transcription elongation factor [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375581|gb|AEA66931.1| Transcription elongation factor [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 160
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E
Sbjct: 3 ITKYPMTVQGAKALEEEHAFLTKVERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G +
Sbjct: 63 RVRDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKLGKI 122
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARALI KE GD++ V PGG YEI++V I
Sbjct: 123 SVGSPIARALIAKEEGDVVVVKTPGGVIEYEIVEVRHI 160
>gi|212634061|ref|YP_002310586.1| transcription elongation factor GreA [Shewanella piezotolerans WP3]
gi|212555545|gb|ACJ27999.1| Prokaryotic transcription elongation factor GreA [Shewanella
piezotolerans WP3]
Length = 153
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/149 (44%), Positives = 103/149 (69%), Gaps = 1/149 (0%)
Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
G +++++EL + E RP I +AI EAR GDL ENAEY AA+E Q L E R+ ++E +
Sbjct: 5 GAEQLRKELDILKFERRPAIAEAIGEARELGDLKENAEYHAAREEQGLCEARVRDIEGKL 64
Query: 71 TRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ A++ID++TM R+ FG TV+++ ++ ++ Y+IVG+ EA+V+ L+S+SSPIAR
Sbjct: 65 SHAQIIDVTTMPNTGRVIFGTTVTILNIDTDEEVTYRIVGEDEANVKENLLSVSSPIARG 124
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVLWI 158
L+GK + D IS+ PGG +EI +V +I
Sbjct: 125 LVGKSVDDEISITTPGGTSDFEITKVEYI 153
>gi|209694181|ref|YP_002262109.1| transcription elongation factor GreA [Aliivibrio salmonicida
LFI1238]
gi|208008132|emb|CAQ78274.1| transcription elongation factor GreA [Aliivibrio salmonicida
LFI1238]
Length = 157
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 108/158 (68%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T +G ++ EL + RP I KAI EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MDKVPMTIRGEKLLRDELEVLLKR-RPVISKAIGEARELGDLKENAEYHAAREDQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M+ ++ FGATV+L++ ++ DK YQIV D EA+++ G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMTNTGKVIFGATVTLLDVDTEDKVKYQIVADDEANIKEGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK + D +S+ PGG K +EI V +I
Sbjct: 120 SVNSPIARGLIGKLVEDEVSIRTPGGTKEFEIDAVEYI 157
>gi|315638220|ref|ZP_07893402.1| transcription elongation factor GreA [Campylobacter upsaliensis
JV21]
gi|315481756|gb|EFU72378.1| transcription elongation factor GreA [Campylobacter upsaliensis
JV21]
Length = 161
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 105/156 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K ++S GF+K+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E
Sbjct: 1 MEKEAMSSFGFEKLNAELKDLKDNQRPAVVVEIDVARSHGDLKENAEYHAAREKQALIES 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL I++RA+VID ++ D + FG++V +++ S + Y +VG E+D++ G +S
Sbjct: 61 RIAELGGILSRAQVIDPASYPHDSVKFGSSVLIMDLESEKESKYTLVGTCESDLEKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+ARA++GK+ GD V P GE +EI+ + +
Sbjct: 121 IASPLARAMLGKKEGDEFKVRLPKGESEFEIISIAY 156
>gi|291277117|ref|YP_003516889.1| transcription elongation factor [Helicobacter mustelae 12198]
gi|290964311|emb|CBG40161.1| transcription elongation factor [Helicobacter mustelae 12198]
Length = 161
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 102/152 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++K++ EL+ ++ +RP I+K I AR++GDL ENAEY AAKE Q E R+ +
Sbjct: 3 PITQYGYEKLRAELKDLKEIQRPNIVKDIDIARSHGDLKENAEYHAAKEKQLFIEARIND 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +++ ++ID T+S ++++FG++V + ++ Y IVG E+D GL+S SP
Sbjct: 63 LTLLLSNVQIIDPHTLSHEKVSFGSSVKIRNLDTEKTFCYTIVGSVESDPARGLISFGSP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA++LIGK +GD +S+ P GE +EIL+V +
Sbjct: 123 IAKSLIGKIVGDEVSIVLPNGESDFEILEVFY 154
>gi|224437954|ref|ZP_03658896.1| transcription elongation factor GreA [Helicobacter cinaedi CCUG
18818]
Length = 158
Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 107/151 (70%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G++K+ EL+ ++ ERP+I+ I AR++GDL ENAEY AA+E Q E R+ EL
Sbjct: 1 MTNYGYEKLCAELKNLKEVERPKIVVEIDVARSHGDLKENAEYHAAREKQAFIEARINEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++++A+VID +++ ++++FG++V ++ ++ + Y +VG E++ GL+S+SSPI
Sbjct: 61 GLMLSQAQVIDPASLKHNKVSFGSSVKILNLDTDKEFVYTLVGSMESNPSKGLISVSSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+AL+GK+ GD +S+ P GE +EIL+V +
Sbjct: 121 AKALMGKKQGDEVSIMLPSGENEFEILEVFY 151
>gi|254458168|ref|ZP_05071594.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD
1]
gi|207085004|gb|EDZ62290.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD
1]
Length = 165
Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 2 VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+DK+ P+T G++K+Q E+R ++ +RP I+KAI EA +GDL ENAEY AAKE Q +
Sbjct: 1 MDKVEPMTLFGYEKLQAEVRDLKEVKRPEIVKAIEEALEHGDLKENAEYHAAKEAQRNID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+L +I+ + ++D S + +I+FG+TV + + +S + Y IVG E++ GL+
Sbjct: 61 NRLADLASILGCSRIVDPSELEHAKISFGSTVVMTDMDSDETVTYTIVGGCESNPDMGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+A+ L+G+E GD + V PGG K YEI +V +
Sbjct: 121 SFASPLAKQLLGREEGDEVKVVLPGGAKEYEIEEVKY 157
>gi|93005658|ref|YP_580095.1| GreA/GreB family elongation factor [Psychrobacter cryohalolentis
K5]
gi|123264676|sp|Q1QCJ2|GREA_PSYCK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|92393336|gb|ABE74611.1| GreA/GreB family elongation factor [Psychrobacter cryohalolentis
K5]
Length = 158
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G ++ EL+ + +RPRI +I+EAR +GDL ENAEY AA+E Q E R+
Sbjct: 3 RYPMTPQGHAALEAELKQLKSIDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A+VID +T+ D R+ FG +V + ++ ++K Y+IVGD EAD ++G +S+
Sbjct: 63 RDIEAKLGGAQVIDPTTLPKDGRVIFGVSVVIENMDTEEEKQYKIVGDDEADFKAGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SPIAR LIGK GD + P G YEI++V++
Sbjct: 123 NSPIARGLIGKSEGDEARIETPKGVVEYEIMKVIY 157
>gi|242308872|ref|ZP_04808027.1| transcription elongation factor GreA [Helicobacter pullorum MIT
98-5489]
gi|239524536|gb|EEQ64402.1| transcription elongation factor GreA [Helicobacter pullorum MIT
98-5489]
Length = 159
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 102/152 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ E
Sbjct: 3 PMTEYGYNKLISELKNLKEVERPNNIKEIDAAREHGDLKENAEYHAARERQLFLDARINE 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++ A VID ST++ D+++FG+T++L + S ++ Y IVG E++ GL+S SP
Sbjct: 63 LTQLVAEARVIDPSTINHDKVSFGSTITLEDLESEEQFCYTIVGATESNPDKGLISYHSP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ L+GK +GD ++++ P G+ YEIL++ +
Sbjct: 123 LAKQLLGKVVGDEVTISLPKGKVDYEILEICY 154
>gi|262278055|ref|ZP_06055840.1| transcription elongation factor [Acinetobacter calcoaceticus
RUH2202]
gi|262258406|gb|EEY77139.1| transcription elongation factor [Acinetobacter calcoaceticus
RUH2202]
Length = 158
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 RYPMTPEGKIALEKELQHLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + + ID+ T+ + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+
Sbjct: 63 QDIEGKLGAVQEIDVKTLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+ K GD + + P GE YEI+ V ++
Sbjct: 123 NSPIARGLLSKSEGDEVKIVTPQGEVEYEIVSVEYL 158
>gi|148652641|ref|YP_001279734.1| transcription elongation factor GreA [Psychrobacter sp. PRwf-1]
gi|189042246|sp|A5WDP3|GREA_PSYWF RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|148571725|gb|ABQ93784.1| transcription elongation factor GreA [Psychrobacter sp. PRwf-1]
Length = 158
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G ++ EL+ + +RPRI AI+EAR +GDL ENAEY AA+E Q E R+
Sbjct: 3 RYPMTPQGHAALEAELKQLKSVDRPRITAAIAEAREHGDLKENAEYHAAREQQGFCEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A+VID +T+ + R+ FG TV + ++ ++K YQIVGD EAD ++ +S+
Sbjct: 63 RDIEAKLSGAQVIDPATLPREGRVVFGVTVVIENLDTEEQKRYQIVGDDEADFKNNKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SPIAR LIGK GD + P G +EI++V++
Sbjct: 123 NSPIARGLIGKSEGDEARIETPSGLVEFEIIEVIY 157
>gi|154149289|ref|YP_001406861.1| transcription elongation factor GreA [Campylobacter hominis ATCC
BAA-381]
gi|166200653|sp|A7I2X0|GREA_CAMHC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|153805298|gb|ABS52305.1| transcription elongation factor GreA [Campylobacter hominis ATCC
BAA-381]
Length = 162
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 103/152 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++KI EL+ + +RP I++ I AR++GDL EN+EY AA+E Q E R+AE
Sbjct: 5 PMTLYGYEKITAELKDLKMVQRPNIVRDIDIARSHGDLKENSEYHAAREKQAFIENRIAE 64
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ +I++RA+VID ST D++ FG+TV++++ + +K Y IVG E+D+ G ++I++P
Sbjct: 65 ISDIVSRAKVIDPSTYEHDKVKFGSTVTIMDVETELEKTYVIVGISESDISKGYININTP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+AR L+GK GD + +N P G EI+ V +
Sbjct: 125 LARQLLGKVEGDDVILNLPNGVSEIEIVSVEY 156
>gi|302191231|ref|ZP_07267485.1| transcription elongation factor GreA [Lactobacillus iners AB-1]
gi|309806139|ref|ZP_07700158.1| transcription elongation factor GreA [Lactobacillus iners LactinV
03V1-b]
gi|309808375|ref|ZP_07702277.1| transcription elongation factor GreA [Lactobacillus iners LactinV
01V1-a]
gi|309810229|ref|ZP_07704074.1| transcription elongation factor GreA [Lactobacillus iners SPIN
2503V10-D]
gi|312871828|ref|ZP_07731916.1| transcription elongation factor GreA [Lactobacillus iners LEAF
3008A-a]
gi|312873001|ref|ZP_07733061.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2062A-h1]
gi|312875557|ref|ZP_07735558.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2053A-b]
gi|325912092|ref|ZP_08174490.1| transcription elongation factor GreA [Lactobacillus iners UPII
143-D]
gi|325912612|ref|ZP_08174995.1| transcription elongation factor GreA [Lactobacillus iners UPII
60-B]
gi|329920134|ref|ZP_08276965.1| transcription elongation factor GreA [Lactobacillus iners SPIN
1401G]
gi|308167494|gb|EFO69654.1| transcription elongation factor GreA [Lactobacillus iners LactinV
03V1-b]
gi|308168382|gb|EFO70498.1| transcription elongation factor GreA [Lactobacillus iners LactinV
01V1-a]
gi|308169501|gb|EFO71549.1| transcription elongation factor GreA [Lactobacillus iners SPIN
2503V10-D]
gi|311088811|gb|EFQ47254.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2053A-b]
gi|311091523|gb|EFQ49907.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2062A-h1]
gi|311092770|gb|EFQ51126.1| transcription elongation factor GreA [Lactobacillus iners LEAF
3008A-a]
gi|325476042|gb|EGC79210.1| transcription elongation factor GreA [Lactobacillus iners UPII
143-D]
gi|325478033|gb|EGC81162.1| transcription elongation factor GreA [Lactobacillus iners UPII
60-B]
gi|328936588|gb|EGG33032.1| transcription elongation factor GreA [Lactobacillus iners SPIN
1401G]
Length = 161
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG
Sbjct: 61 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEMYTIVGSDESDPLSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146
+S SPIA+AL+GK+ GD++S+N PGG
Sbjct: 121 ISNDSPIAKALLGKKKGDVVSINTPGG 147
>gi|15672618|ref|NP_266792.1| transcription elongation factor [Lactococcus lactis subsp. lactis
Il1403]
gi|281491116|ref|YP_003353096.1| transcription elongation factor GreA [Lactococcus lactis subsp.
lactis KF147]
gi|13878507|sp|Q9CHT2|GREA_LACLA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|12723539|gb|AAK04734.1|AE006296_8 transcription elongation factor GreA [Lactococcus lactis subsp.
lactis Il1403]
gi|281374866|gb|ADA64385.1| Transcription elongation factor GreA [Lactococcus lactis subsp.
lactis KF147]
gi|326406137|gb|ADZ63208.1| transcription elongation factor GreA [Lactococcus lactis subsp.
lactis CV56]
Length = 156
Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 105/155 (67%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M P+T +G DK++ EL + +RP +I I AR+YGDLSEN+EY+AAK+ Q E
Sbjct: 1 MEKTFPMTQEGLDKLKLELENLKLVKRPEVIDRIKVARSYGDLSENSEYEAAKDEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ +E +I AE++D + ++ D +A G V+ VE D+++YQIVG EAD SG +
Sbjct: 61 GRISTVETMIRYAEIVDNAKIAKDEVALGKNVTFVEVGETDEESYQIVGTAEADPFSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPIAR LIGK++GDI++V P GE T +I++V
Sbjct: 121 SNESPIARVLIGKKVGDIVNVPLPVGEMTVKIVKV 155
>gi|57237342|ref|YP_178355.1| transcription elongation factor GreA [Campylobacter jejuni RM1221]
gi|88597201|ref|ZP_01100436.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 84-25]
gi|148926989|ref|ZP_01810665.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
CG8486]
gi|157414583|ref|YP_001481839.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 81116]
gi|205356059|ref|ZP_03222827.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
CG8421]
gi|218561949|ref|YP_002343728.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|25453017|sp|Q9PIK9|GREA_CAMJE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|73621018|sp|Q5HWI0|GREA_CAMJR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|172047031|sp|A8FK75|GREA_CAMJ8 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|57166146|gb|AAW34925.1| transcription elongation factor GreA [Campylobacter jejuni RM1221]
gi|88190262|gb|EAQ94236.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112359655|emb|CAL34440.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|145844397|gb|EDK21506.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
CG8486]
gi|157385547|gb|ABV51862.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
81116]
gi|205346183|gb|EDZ32818.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
CG8421]
gi|284925562|gb|ADC27914.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni IA3902]
gi|307747227|gb|ADN90497.1| Transcription elongation factor greA [Campylobacter jejuni subsp.
jejuni M1]
gi|315057711|gb|ADT72040.1| Transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni S3]
gi|315927206|gb|EFV06556.1| Transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315930041|gb|EFV09180.1| Transcription elongation factor [Campylobacter jejuni subsp. jejuni
305]
Length = 161
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 102/154 (66%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+
Sbjct: 3 KEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIESRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E ++ G +SI+
Sbjct: 63 AELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGNLDKGYISIA 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA+A++GK+ GD V P GE +EIL + +
Sbjct: 123 SPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156
>gi|59711083|ref|YP_203859.1| transcription elongation factor GreA [Vibrio fischeri ES114]
gi|197336313|ref|YP_002155232.1| transcription elongation factor GreA [Vibrio fischeri MJ11]
gi|59479184|gb|AAW84971.1| transcription elongation factor [Vibrio fischeri ES114]
gi|197317803|gb|ACH67250.1| transcription elongation factor GreA [Vibrio fischeri MJ11]
Length = 157
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/158 (43%), Positives = 107/158 (67%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T +G ++ EL + RP I KAI EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MDKVPMTVRGEKLLRDELEVLLKR-RPLISKAIGEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M+ ++ FG TV+L++ N+ ++ YQIV D EA+++ G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMTNTGKVIFGTTVTLIDVNTDEEVKYQIVADDEANIKEGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +++ PGG K +EI V +I
Sbjct: 120 SVNSPIARGLIGKMEGDEVNIQTPGGTKEFEIDAVDYI 157
>gi|309803130|ref|ZP_07697227.1| transcription elongation factor GreA [Lactobacillus iners LactinV
11V1-d]
gi|312874272|ref|ZP_07734306.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2052A-d]
gi|308164638|gb|EFO66888.1| transcription elongation factor GreA [Lactobacillus iners LactinV
11V1-d]
gi|311090342|gb|EFQ48752.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2052A-d]
Length = 161
Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG
Sbjct: 61 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEIGTDDSEMYTIVGSDESDPLSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146
+S SPIA+AL+GK+ GD++S+N PGG
Sbjct: 121 ISNDSPIAKALLGKKKGDVVSINTPGG 147
>gi|71065373|ref|YP_264100.1| transcription elongation factor GreA [Psychrobacter arcticus 273-4]
gi|123775615|sp|Q4FTJ2|GREA_PSYA2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71038358|gb|AAZ18666.1| GreA transcription elongation factor [Psychrobacter arcticus 273-4]
Length = 158
Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G ++ EL+ + +RPRI +I+EAR +GDL ENAEY AA+E Q E R+
Sbjct: 3 RYPMTPQGHAALEAELKQLKSIDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A++ID +T+ D R+ FG +V + ++ ++K Y+IVGD EAD ++G +S+
Sbjct: 63 RDIEAKLGGAQIIDPATLPKDGRVIFGVSVVIENMDTEEEKQYKIVGDDEADFKAGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SPIAR LIGK GD + P G YEI++V++
Sbjct: 123 NSPIARGLIGKSEGDEARIETPKGVVEYEIMKVIY 157
>gi|259500541|ref|ZP_05743443.1| transcription elongation factor GreA [Lactobacillus iners DSM
13335]
gi|315653624|ref|ZP_07906544.1| transcription elongation factor GreA [Lactobacillus iners ATCC
55195]
gi|259167925|gb|EEW52420.1| transcription elongation factor GreA [Lactobacillus iners DSM
13335]
gi|315488986|gb|EFU78628.1| transcription elongation factor GreA [Lactobacillus iners ATCC
55195]
Length = 174
Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 14 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 73
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG
Sbjct: 74 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEMYTIVGSDESDPLSGK 133
Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146
+S SPIA+AL+GK+ GD++S+N PGG
Sbjct: 134 ISNDSPIAKALLGKKKGDVVSINTPGG 160
>gi|148244934|ref|YP_001219628.1| transcription elongation factor GreA [Candidatus Vesicomyosocius
okutanii HA]
gi|166201193|sp|A5CVW9|GREA_VESOH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|146326761|dbj|BAF61904.1| transcription elongation factor GreA [Candidatus Vesicomyosocius
okutanii HA]
Length = 159
Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ IPVT+ G ++ L + RPRII+ I ARA+GDL ENAEY AAKE Q+ EG
Sbjct: 1 MNNIPVTAFGAKALEAALLKLKDVSRPRIIEDIRIARAHGDLKENAEYHAAKEEQSFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++R ++ID++ +S D R FG T++L+ + YQIVG+ EAD+ +
Sbjct: 61 RIKEIELKLSRMQIIDVTKLSQDGRCVFGTTITLMNSVDNSEITYQIVGEDEADISLDKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S SPIA AL+G E GD + V AP G+ Y+IL V +
Sbjct: 121 SCHSPIASALMGNEEGDKVIVKAPKGDIVYKILSVEY 157
>gi|226951540|ref|ZP_03822004.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Acinetobacter sp. ATCC 27244]
gi|294651182|ref|ZP_06728514.1| transcription elongation factor GreA [Acinetobacter haemolyticus
ATCC 19194]
gi|226837732|gb|EEH70115.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Acinetobacter sp. ATCC 27244]
gi|292822935|gb|EFF81806.1| transcription elongation factor GreA [Acinetobacter haemolyticus
ATCC 19194]
Length = 158
Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +++EL+ + +RPRI +AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 RYPMTPEGKVALEKELQQLKTVDRPRITQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + +VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+
Sbjct: 63 QDIEGKLGACQVIDVKDLEKNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GK GD + P GE YEI+ V ++
Sbjct: 123 NSPIARGLLGKSEGDEAKIQTPQGEVEYEIVSVEYL 158
>gi|309805184|ref|ZP_07699236.1| transcription elongation factor GreA [Lactobacillus iners LactinV
09V1-c]
gi|308165418|gb|EFO67649.1| transcription elongation factor GreA [Lactobacillus iners LactinV
09V1-c]
Length = 161
Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/147 (44%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG
Sbjct: 61 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEVYTIVGSDESDPLSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146
+S SPIA+AL+GK+ GD++S+N PGG
Sbjct: 121 ISNDSPIAKALLGKKKGDVVSINTPGG 147
>gi|212702631|ref|ZP_03310759.1| hypothetical protein DESPIG_00659 [Desulfovibrio piger ATCC 29098]
gi|212673903|gb|EEB34386.1| hypothetical protein DESPIG_00659 [Desulfovibrio piger ATCC 29098]
Length = 164
Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V IP++ +G+ ++++EL R + ERP II+AI EAR GDL ENA Y AA+E Q + E
Sbjct: 3 VTNIPISKQGYKRLEEEL-ARLKSERPAIIQAIKEAREEGDLRENAGYDAARERQGMAEA 61
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +E+ + +VID+ +SGD++ FG+TV + + ++ + + Y I+G EA+ G +S
Sbjct: 62 RIKYIESRMALYQVIDLDKLSGDKVIFGSTVEVEDVDTEESRTYTILGPDEAEPAKGSIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ +AL+GKE+GD +SV+ P G TYEI+ + +
Sbjct: 122 FLSPVGQALLGKEVGDEVSVDIPRGRVTYEIVDITF 157
>gi|262371951|ref|ZP_06065230.1| transcription elongation factor GreB [Acinetobacter junii SH205]
gi|262311976|gb|EEY93061.1| transcription elongation factor GreB [Acinetobacter junii SH205]
Length = 158
Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +++EL+ + +RPRI +AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 RYPMTPEGKVALEKELQQLKTVDRPRITQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + +VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+
Sbjct: 63 QDIEGKLGACQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+GK GD + P GE YEI+ V ++
Sbjct: 123 NSPIARGLLGKSEGDEAKIQTPQGEVEYEIVSVEYL 158
>gi|332978289|gb|EGK15017.1| transcription elongation factor GreA [Psychrobacter sp. 1501(2011)]
Length = 158
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 103/155 (66%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G ++ EL+ + +RPRI +I+EAR +GDL ENAEY AA+E Q E R+
Sbjct: 3 RYPMTPQGHAALEAELKQLKTVDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E ++ A+VID +T+ + R+ FG TV + ++ ++K YQIVGD EAD ++ +S+
Sbjct: 63 RDIEAKLSGAQVIDPTTLPREGRVVFGVTVVIENLDTEEQKRYQIVGDDEADFKNNKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SPIAR LIGK GD + P G +EI++V++
Sbjct: 123 NSPIARGLIGKSEGDEARIETPSGVVEFEIIEVIY 157
>gi|104780017|ref|YP_606515.1| transcription elongation factor GreA [Pseudomonas entomophila L48]
gi|95109004|emb|CAK13700.1| transcription elongation factor (Transcript cleavage factor greA)
[Pseudomonas entomophila L48]
Length = 160
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E
Sbjct: 3 ITKYPMTVQGARALEEEHLFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + + VID++T++ ++ FG TV L + ++ YQIVG+ EADV+ G +
Sbjct: 63 RIRDIEGRLQNSVVIDVTTIAHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKQGKL 122
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S +PIARA+IGKE GD + V P G YEI++V I
Sbjct: 123 SSGAPIARAIIGKEEGDTVVVKTPSGTVEYEIVEVKHI 160
>gi|317154377|ref|YP_004122425.1| transcription elongation factor GreA [Desulfovibrio aespoeensis
Aspo-2]
gi|316944628|gb|ADU63679.1| transcription elongation factor GreA [Desulfovibrio aespoeensis
Aspo-2]
Length = 164
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 107/157 (68%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+IP++ +GF+KI++EL + +RP II+AI EAR GDLSENA Y AA+E Q + E
Sbjct: 1 MDRIPISKQGFEKIKKELE-ELKAQRPAIIQAIKEAREEGDLSENAGYDAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ + + + +V+D+ T+ G R FGATV + + ++ + K + ++G +AD +SG +S
Sbjct: 60 RITYINSRMPLFDVLDLDTLGGSRAIFGATVEIEDMDTEETKRFTLLGPDDADHKSGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SP+ RAL+GKE+GD V+AP G YEI+ + ++
Sbjct: 120 VLSPMGRALMGKEVGDEAIVDAPRGRIEYEIVSIQFL 156
>gi|148979040|ref|ZP_01815285.1| transcription elongation factor GreA [Vibrionales bacterium SWAT-3]
gi|145962013|gb|EDK27301.1| transcription elongation factor GreA [Vibrionales bacterium SWAT-3]
Length = 157
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +++ EL R + RP I AI EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGAQQLRDELD-RLLKLRPVISAAIGEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A++ID++ M +I FG TV+L++ ++ ++ YQIV + EAD+++G +
Sbjct: 60 QIRDIEYKLSLAQIIDVTQMENTGKIIFGTTVTLIDVDTDEEYRYQIVSEDEADIKTGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIAR LIGK GD + ++ PGG+K YEI +V +I
Sbjct: 120 SVKSPIARGLIGKMEGDEVMISTPGGDKDYEIDKVEYI 157
>gi|157376534|ref|YP_001475134.1| transcription elongation factor GreA [Shewanella sediminis HAW-EB3]
gi|157318908|gb|ABV38006.1| transcription elongation factor GreA [Shewanella sediminis HAW-EB3]
Length = 153
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/153 (43%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++++EL + + E+RP I +AI EAR GDL ENAEY AA+E Q L E R+ ++
Sbjct: 1 MTVVGAERLRKELDYLKFEKRPVIAQAIGEARELGDLKENAEYHAAREEQGLCEARVRDI 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ ++ID++ M RI FG TV+++ ++ + Y+IVG+ EAD++ L+S+SSP
Sbjct: 61 EGKLSNVQIIDVTKMPNTGRIIFGTTVTILNIDTDVEVTYRIVGEDEADIKENLISVSSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGK L D +++ PGG YEI V +I
Sbjct: 121 IARGLIGKNLDDEVNIATPGGITEYEITAVEYI 153
>gi|57168415|ref|ZP_00367549.1| transcription elongation factor Cj0287c [Campylobacter coli RM2228]
gi|57020223|gb|EAL56897.1| transcription elongation factor Cj0287c [Campylobacter coli RM2228]
Length = 161
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 102/154 (66%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+
Sbjct: 3 KEPMSQFGYDKLSAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIESRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL ++I RA++ID S+ D + FG++V +++ ++ + Y +VG E ++ G +SI+
Sbjct: 63 AELSDLIARAQIIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGNLDKGYISIA 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA+A++GK+ GD V P GE +EI+ + +
Sbjct: 123 SPIAKAMLGKKEGDEFKVRLPKGESEFEIISINY 156
>gi|293609985|ref|ZP_06692287.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828437|gb|EFF86800.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325123193|gb|ADY82716.1| transcription elongation factor, cleaves 3' nucleotide of paused
Mrna [Acinetobacter calcoaceticus PHEA-2]
Length = 158
Score = 130 bits (327), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 RYPMTPEGKIALEKELQHLKSVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + ++VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+
Sbjct: 63 QDIEGKLGASQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIAR L+ K GD + + P GE YEI+ V ++
Sbjct: 123 NSPIARGLLSKSEGDEVKIVTPQGEVEYEIVSVEYL 158
>gi|77360173|ref|YP_339748.1| transcription elongation factor greA [Pseudoalteromonas
haloplanktis TAC125]
gi|76875084|emb|CAI86305.1| transcription elongation factor greA [Pseudoalteromonas
haloplanktis TAC125]
Length = 158
Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G D +++EL + RP+I+ I+ AR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTVRGADLLRKELTELKTVTRPKIVSDIAVAREHGDLKENAEYHAAREQQGFCEGRIQ 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E ++ ++ID++ M ++ FG TV++V + + YQIVGD EA ++ +S++
Sbjct: 64 EIEAKLSNVQIIDVTKMPNTGKVIFGTTVTIVNVETDVEVKYQIVGDDEASIKDNRISVN 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR LIGK+ D +++ P G YEI++V +I
Sbjct: 124 SPIARGLIGKQADDAVNIETPKGTVEYEIIEVEYI 158
>gi|319651649|ref|ZP_08005776.1| transcription elongation factor GreA [Bacillus sp. 2_A_57_CT2]
gi|317396716|gb|EFV77427.1| transcription elongation factor GreA [Bacillus sp. 2_A_57_CT2]
Length = 158
Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/151 (43%), Positives = 98/151 (64%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G +K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q EGR+
Sbjct: 7 FPMTQAGKEKLEQELEYLKSVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LEN+I A++I M+GD + G +V+ VE GD++ Y IVG EAD G +S S
Sbjct: 67 TLENMIRNAKIIQEEEMAGDIVGLGRSVTFVELPDGDEETYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA++LIG+ +GD ++V PGGE I+ +
Sbjct: 127 PIAKSLIGRTVGDEVTVQTPGGEMNVRIVSI 157
>gi|170719896|ref|YP_001747584.1| transcription elongation factor GreA [Pseudomonas putida W619]
gi|169757899|gb|ACA71215.1| transcription elongation factor GreA [Pseudomonas putida W619]
Length = 160
Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E
Sbjct: 3 ITKYPMTVQGARALEEEHLFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + + VID++T+ ++ FG TV L + ++ +YQIVG+ EADV+ G +
Sbjct: 63 RIRDIEGRLQNSVVIDVTTIPHTGKVIFGTTVVLANTETDEEVSYQIVGEDEADVKQGKL 122
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S +PIARA+IGKE GD + V P G YEI++V I
Sbjct: 123 SSGAPIARAIIGKEEGDTVVVKTPSGSVEYEIVEVKHI 160
>gi|116515169|ref|YP_802798.1| hypothetical protein BCc_237 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|122285435|sp|Q057J4|GREA_BUCCC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116257023|gb|ABJ90705.1| transcription elongation factor [Buchnera aphidicola str. Cc
(Cinara cedri)]
Length = 159
Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/159 (44%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +KIP+T +GF+K++ EL+ + RP I+KAI+ AR GDL ENAEY +A+E Q+ E
Sbjct: 1 MFNKIPMTLRGFNKLKSELKKLKYITRPCIVKAIANARQLGDLKENAEYHSAREEQSFCE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ E+EN + RA++IDI+ + I FG+TV++++ ++ + Y IVGD EA+ +
Sbjct: 61 NRICEIENKLLRAQIIDITKIPFKGIVIFGSTVTVLQISTSNIFVYTIVGDDEANYKEFS 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SI SP++RALIGK+ DII VN P G Y I ++ +I
Sbjct: 121 ISIHSPMSRALIGKKKNDIIKVNTPTGYIKYIIKKIEYI 159
>gi|254461545|ref|ZP_05074961.1| transcription elongation factor GreA [Rhodobacterales bacterium
HTCC2083]
gi|206678134|gb|EDZ42621.1| transcription elongation factor GreA [Rhodobacteraceae bacterium
HTCC2083]
Length = 151
Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 114/152 (75%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EGR+ L
Sbjct: 1 MTKSGHTAVEVELKNLKTVERPAIIAAIAEAREHGDLSENAEYHSAREKHSFIEGRVKLL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I++ A VID +T++G I FGAT++LV++++ ++K +QIVG+ EA+V++GL++I SPI
Sbjct: 61 EGILSLAAVIDPATLNG-TIKFGATITLVDEDTDEEKTWQIVGEHEANVEAGLLNIKSPI 119
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARALIGK+ GD + V PGG K+YE+L++ +I
Sbjct: 120 ARALIGKDEGDSVEVRTPGGSKSYEVLKIEFI 151
>gi|81428983|ref|YP_395983.1| transcription elongation factor GreA [Lactobacillus sakei subsp.
sakei 23K]
gi|78610625|emb|CAI55676.1| Transcription elongation factor GreA (Transcriptcleavage factor
GreA) [Lactobacillus sakei subsp. sakei 23K]
Length = 157
Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 102/152 (67%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T++G + + +EL + +RP +I I AR++GDLSEN+EY++AK+ Q+ E R+
Sbjct: 5 KFPMTAEGKENLAKELENLKMVKRPEVIDRIKIARSFGDLSENSEYESAKDEQSSLETRI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+EN++ AEVID+ ++ D IA G TVS + G+++ YQIVG E+D +G +S
Sbjct: 65 VEVENMLRFAEVIDVDNIAVDEIAVGKTVSFTDDEDGEEETYQIVGAAESDPFNGKISND 124
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPIA+AL+GK +GD + V PGG+ I +V
Sbjct: 125 SPIAQALVGKHVGDKVVVQTPGGDMHVTITEV 156
>gi|283955240|ref|ZP_06372741.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
414]
gi|283793277|gb|EFC32045.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
414]
Length = 161
Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 102/154 (66%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E R+
Sbjct: 3 KEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIESRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E ++ G +SI+
Sbjct: 63 AELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGNLDKGYISIA 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA+A++GK+ GD V P GE +EI+ + +
Sbjct: 123 SPIAKAMLGKKEGDDFKVRLPKGESEFEIISINY 156
>gi|319760241|ref|YP_004124179.1| transcription elongation factor GreA [Candidatus Blochmannia vafer
str. BVAF]
gi|318038955|gb|ADV33505.1| transcription elongation factor GreA [Candidatus Blochmannia vafer
str. BVAF]
Length = 160
Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G ++++++L + + RP I K+ISEAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 KFPMTLRGVEQLREKLDYLKNVLRPIITKSISEARRHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ ++D++ + D ++ FG TV + + KK Y+IVGD E++++ ++SI
Sbjct: 63 REIEYKLSNVYIVDVTKVISDKKVVFGVTVCIENVITQCKKIYRIVGDDESNLKKNMISI 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSPIA+ LIG + GDI+ ++ P G+ Y I+++ ++
Sbjct: 123 SSPIAQGLIGHKEGDIVLISTPNGKIEYRIVKIEYL 158
>gi|323700312|ref|ZP_08112224.1| transcription elongation factor GreA [Desulfovibrio sp. ND132]
gi|323460244|gb|EGB16109.1| transcription elongation factor GreA [Desulfovibrio desulfuricans
ND132]
Length = 164
Score = 129 bits (325), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+IP++ +GF+KI QEL + +RP II+AI+EARA GDLSENA Y AA+E Q + E
Sbjct: 1 MDRIPISKQGFEKISQELE-DLKAQRPAIIQAIAEARAEGDLSENAGYDAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ + + + +V+D+ +SG+R FGATV + + ++ +++ + ++G +AD + G +S
Sbjct: 60 RISYINSHMPLFDVLDLDALSGERAIFGATVEVEDIDTEERRTFTLLGPDDADHKKGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SP+ +A++GKE GD + V+AP G YEI+ V ++
Sbjct: 120 VLSPMGQAILGKEEGDEVIVDAPRGRIEYEIVSVQFL 156
>gi|257459030|ref|ZP_05624149.1| transcription elongation factor GreA [Campylobacter gracilis
RM3268]
gi|257443415|gb|EEV18539.1| transcription elongation factor GreA [Campylobacter gracilis
RM3268]
Length = 163
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 99/152 (65%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++KI EL+ Q + P I++ I AR +GDL ENAEY AA+E Q R+AE
Sbjct: 5 PMTLYGYEKITSELKELQSVKLPHIVQQIDIARGHGDLKENAEYHAAREEQAFLLSRIAE 64
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +II+R+++ID ST DR+ FG+TV+ ++ + ++ Y IVG EAD+ L++I++P
Sbjct: 65 LSDIISRSKIIDPSTYEHDRVKFGSTVTFMDVETEREETYVIVGLSEADISRKLININTP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+AR L+GK GD + + P G + EIL V +
Sbjct: 125 LARQLLGKAEGDEVVLQLPSGTRDVEILSVEY 156
>gi|26991405|ref|NP_746830.1| transcription elongation factor GreA [Pseudomonas putida KT2440]
gi|148549790|ref|YP_001269892.1| transcription elongation factor GreA [Pseudomonas putida F1]
gi|167035714|ref|YP_001670945.1| transcription elongation factor GreA [Pseudomonas putida GB-1]
gi|37999617|sp|Q88DU7|GREA_PSEPK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|24986475|gb|AAN70294.1|AE016670_4 transcription elongation factor GreA [Pseudomonas putida KT2440]
gi|148513848|gb|ABQ80708.1| transcription elongation factor GreA [Pseudomonas putida F1]
gi|166862202|gb|ABZ00610.1| transcription elongation factor GreA [Pseudomonas putida GB-1]
gi|313500631|gb|ADR61997.1| GreA [Pseudomonas putida BIRD-1]
Length = 160
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 101/158 (63%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E
Sbjct: 3 ITKYPMTVQGARALEEEHLFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + + VID++T+ ++ FG TV L + ++ YQIVG+ EADV+ G +
Sbjct: 63 RIRDIEGRLQNSVVIDVTTIPHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKQGKL 122
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S +PIARA+IGKE GD + V P G YEI++V I
Sbjct: 123 SSGAPIARAIIGKEEGDTVVVKTPSGTVEYEIVEVKHI 160
>gi|307720542|ref|YP_003891682.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM
16294]
gi|306978635|gb|ADN08670.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM
16294]
Length = 165
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 105/152 (69%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++K+Q E++ ++ +RP ++KAI EA +GDL ENAEY AAKE Q + R+AE
Sbjct: 6 PMTLFGYEKLQAEVKDLKEVKRPGVVKAIEEALEHGDLKENAEYHAAKEQQKNIDNRLAE 65
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I+ ++++D + + +++FG+TV + ++ ++ +Y IVG E++ GL+S +SP
Sbjct: 66 LQEILGNSQIVDPTELEHAKVSFGSTVVMTNLDTDEEVSYTIVGGCESNPDIGLISFNSP 125
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ L+GKE GD + V PGGEK +EI +V +
Sbjct: 126 LAKQLLGKEEGDEVKVRLPGGEKEFEIDEVKY 157
>gi|253827215|ref|ZP_04870100.1| transcription elongation factor [Helicobacter canadensis MIT
98-5491]
gi|253510621|gb|EES89280.1| transcription elongation factor [Helicobacter canadensis MIT
98-5491]
Length = 156
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 101/151 (66%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ EL
Sbjct: 1 MTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ A VID ST++ D+++FG+T++L + +S ++ Y IVG E++ GL+S SP+
Sbjct: 61 TQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSPL 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK +GD +++ P G+ YEIL++ +
Sbjct: 121 AKQLLGKVVGDEVTIQLPKGKVDYEILEICY 151
>gi|149921005|ref|ZP_01909465.1| transcription elongation factor GreA [Plesiocystis pacifica SIR-1]
gi|149818137|gb|EDM77593.1| transcription elongation factor GreA [Plesiocystis pacifica SIR-1]
Length = 155
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 104/151 (68%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K++ ELR ++ +RP+ + I A +GDL ENAEY AAKE Q RMA L
Sbjct: 1 MTPAGLQKLRDELRNIKEVQRPQNVADIETALGHGDLRENAEYHAAKERQAELAARMAYL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ I+ A+VID + M+ +++AFGATV+L++ ++ ++ Y +VG+ E +V++G +SI++PI
Sbjct: 61 ESHISLAQVIDPAEMNSNKVAFGATVTLMDADTEEEVVYCLVGEDETNVKAGKISITAPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+GKE GD +V P G + +EI+ V +
Sbjct: 121 ARALLGKEAGDDATVRLPKGTRDFEIINVEY 151
>gi|325276153|ref|ZP_08141959.1| transcription elongation factor GreA [Pseudomonas sp. TJI-51]
gi|324098713|gb|EGB96753.1| transcription elongation factor GreA [Pseudomonas sp. TJI-51]
Length = 153
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/153 (44%), Positives = 101/153 (66%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++EL + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E R+ ++
Sbjct: 1 MTVQGARALEEELTFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARIRDI 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E + + VID++T++ ++ FG TV L + ++ YQIVG+ EADV+ G +S S+P
Sbjct: 61 EGRLQNSVVIDVTTIAHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKKGKLSNSAP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARA+IGKE GD + V P G YEI++V I
Sbjct: 121 IARAIIGKEEGDTVVVKTPNGTVEYEIVEVKHI 153
>gi|118475144|ref|YP_891529.1| transcription elongation factor GreA [Campylobacter fetus subsp.
fetus 82-40]
gi|118414370|gb|ABK82790.1| transcription elongation factor GreA [Campylobacter fetus subsp.
fetus 82-40]
Length = 161
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/152 (40%), Positives = 105/152 (69%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++K+ EL+ + +RP I++ I AR++GDL ENAEY AA+E Q E R+AE
Sbjct: 4 PMTLYGYEKLSSELKDLKLVQRPAIVEEIDIARSHGDLKENAEYHAAREKQAFIENRIAE 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +I++RA+VI+ S DR+ FG+T+++++ ++ + Y IVG E++++ GL+SI++P
Sbjct: 64 LSDILSRAKVINPSEYEHDRVKFGSTITIMDVDTELETTYTIVGISESNLERGLISINTP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ LIGK GD ++++ P G EI+ V +
Sbjct: 124 LAKQLIGKSEGDNVTLSLPNGISEIEIVSVCY 155
>gi|124515276|gb|EAY56786.1| putative transcription elongation factor GreA [Leptospirillum
rubarum]
gi|206601580|gb|EDZ38063.1| Putative transcription elongation factor GreA [Leptospirillum sp.
Group II '5-way CG']
Length = 160
Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 105/156 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++++P+T G++K+++EL + EERP+ I+ I+EARA+GDLSENAEY AAKE Q
Sbjct: 1 MNQVPMTKAGYEKLKEELEKLKHEERPKNIQDIAEARAHGDLSENAEYHAAKERQGFINS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I A V+ + RI FGATV LV +S ++K Y +VG +EAD+++G +S
Sbjct: 61 RIKELEAKIASAIVVSSAHQDHSRITFGATVRLVPLDSKEEKRYTLVGQEEADLKAGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+ +ALIG G+ +++ P GE Y I ++ +
Sbjct: 121 VHSPVGKALIGHSEGETVTIRVPAGEVQYTIAEIFY 156
>gi|87121705|ref|ZP_01077592.1| transcription elongation factor greA (transcript cleavage factor)
[Marinomonas sp. MED121]
gi|86162956|gb|EAQ64234.1| transcription elongation factor greA (transcript cleavage factor)
[Marinomonas sp. MED121]
Length = 158
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T +G ++++EL + ERPRII I+ AR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 KVPMTVEGEARLREELGHLKSVERPRIINDIAIAREHGDLKENAEYHAAREEQGFAEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ ++VID+ ++ ++ FG+T++L ++ + Y+IVGD EA+V+ +S
Sbjct: 63 KEIEGKLSDSQVIDVKAIAHTGKVIFGSTITLFNVDTEETVTYRIVGDDEAEVKDKKISY 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+SPIA+ALIGK GD +++ P GE YEI V
Sbjct: 123 ASPIAKALIGKNEGDEVAIKIPSGEVVYEIESV 155
>gi|218512591|ref|ZP_03509431.1| transcription elongation factor GreA [Rhizobium etli 8C-3]
Length = 106
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 73/84 (86%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NEGR+ EL
Sbjct: 1 MTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNEGRITEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGA 90
E++ RAEVID++ MSGD+I FGA
Sbjct: 61 EDLTARAEVIDLTKMSGDKIKFGA 84
>gi|86148136|ref|ZP_01066435.1| transcription elongation factor GreA [Vibrio sp. MED222]
gi|218710454|ref|YP_002418075.1| transcription elongation factor GreA [Vibrio splendidus LGP32]
gi|85834053|gb|EAQ52212.1| transcription elongation factor GreA [Vibrio sp. MED222]
gi|218323473|emb|CAV19650.1| transcription elongation factor GreA [Vibrio splendidus LGP32]
Length = 157
Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +++ EL R + RP I AI EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGAQQLRDELD-RLLKLRPIISAAIGEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A++ID++ M +I FG TV+L++ ++ ++ YQIV + EAD+++G +
Sbjct: 60 QIRDIEYKLSLAQIIDVTQMDNTGKIIFGTTVTLIDVDTDEEFRYQIVSEDEADIKTGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIAR LIGK GD + ++ PGG+K +EI +V +I
Sbjct: 120 SVKSPIARGLIGKMEGDEVLISTPGGDKDFEIDKVEYI 157
>gi|315641239|ref|ZP_07896316.1| transcription elongation factor GreA [Enterococcus italicus DSM
15952]
gi|315483006|gb|EFU73525.1| transcription elongation factor GreA [Enterococcus italicus DSM
15952]
Length = 157
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKAKLEQELEELKTVKRGEIIERIKIARSFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE +I A++ID + D ++ G TV+ VE GD++ Y IVG EAD SG
Sbjct: 61 EGRITTLETMIRFAQIIDNDGVDQDEVSIGKTVTFVELPDGDEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+ALIGK+L D ++++ PGG+ +I+ V
Sbjct: 121 ISNDSPIAQALIGKKLNDEVTISTPGGDMPVKIISV 156
>gi|227538368|ref|ZP_03968417.1| transcription elongation factor GreA [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241883|gb|EEI91898.1| transcription elongation factor GreA [Sphingobacterium spiritivorum
ATCC 33300]
Length = 157
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 98/145 (67%)
Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
G DK+++EL + E R I KAI+EAR GDLSENAEY AAKE Q L+E ++A+LE+++
Sbjct: 11 GLDKLKEELHHLKTEGRANIAKAIAEARDKGDLSENAEYDAAKEAQGLHEAKIAKLEDVL 70
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
+ A +ID S + ++ + V + K +G + YQ+V + EAD++SG +S+ SPIA+ L
Sbjct: 71 SSARLIDESKLDTSKVLALSIVRIKNKKNGSEMTYQLVSETEADLKSGKISVKSPIAQGL 130
Query: 131 IGKELGDIISVNAPGGEKTYEILQV 155
+GK GD ++ P G+ +EI+++
Sbjct: 131 LGKSKGDTATIEVPAGKIEFEIMEI 155
>gi|237752951|ref|ZP_04583431.1| transcription elongation factor GreA [Helicobacter winghamensis
ATCC BAA-430]
gi|229375218|gb|EEO25309.1| transcription elongation factor GreA [Helicobacter winghamensis
ATCC BAA-430]
Length = 159
Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 99/152 (65%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++K+ EL+ ++ ERP I I AR +GDL ENAEY AA+E Q + R+ E
Sbjct: 3 PMTEYGYNKLITELKNLKEVERPNNIIEIDTAREHGDLKENAEYHAARERQLFLDARINE 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++ A VID +T+ D+++FG+T++L + ++ + Y IVG E++ + GL+S SP
Sbjct: 63 LTQLVAEARVIDPATLPHDKVSFGSTITLEDLDTEENYTYTIVGATESNPEKGLISYHSP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ L+GK +GD ++V P G YEIL++ +
Sbjct: 123 LAKQLLGKIVGDEVAVTLPKGRVDYEILEITY 154
>gi|78777731|ref|YP_394046.1| transcription elongation factor GreA [Sulfurimonas denitrificans
DSM 1251]
gi|78498271|gb|ABB44811.1| GreA/GreB family elongation factor [Sulfurimonas denitrificans DSM
1251]
Length = 165
Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 103/152 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++K+Q E++ ++ +RPR++K I EA +GDL ENAEY AAKE Q + + R+AE
Sbjct: 6 PMTLFGYNKLQAEVKNIKEVKRPRVVKDIEEALEHGDLKENAEYHAAKEQQKILDNRLAE 65
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +I ++++D + + +++FG+TV + + S + Y IVG E++ GL+S +SP
Sbjct: 66 LAELIGSSKIVDPTELEHTKVSFGSTVVVCDVISEIEYTYTIVGGCESNPDIGLISFNSP 125
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ L+G+E GD + V P G+K +EI++V +
Sbjct: 126 LAKQLLGREEGDDVKVQLPNGQKEFEIIEVTY 157
>gi|32472148|ref|NP_865142.1| transcription elongation factor greA [Rhodopirellula baltica SH 1]
gi|77416496|sp|Q7UVA0|GREA_RHOBA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|32397520|emb|CAD72826.1| transcription elongation factor greA [Rhodopirellula baltica SH 1]
Length = 159
Score = 127 bits (319), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 103/157 (65%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+ +P+T +G++KI+ E+ + EE P I++ I+EAR GDL ENAEY A +E Q +
Sbjct: 1 MVESVPMTREGYNKIKAEINRMENEEMPMIVQKIAEAREEGDLKENAEYHAQRENQGMLM 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ EL + I RA +ID+S++ D + FG TV++ + GD++ + +VG + D SG +
Sbjct: 61 AKINELRDKIARASIIDVSSLPKDEVVFGCTVTVEDVAYGDEEQFTLVGAGDEDYDSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++SP + L+GK++G+ V+ P G+ ++IL++ +
Sbjct: 121 LVTSPFGQGLVGKKVGETAEVDVPAGKLKFKILKIEF 157
>gi|149909289|ref|ZP_01897945.1| transcription elongation factor GreA [Moritella sp. PE36]
gi|149807606|gb|EDM67554.1| transcription elongation factor GreA [Moritella sp. PE36]
Length = 159
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 103/159 (64%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + IP+T++G + ++ EL + RP I+ +I+ AR +GDL ENAEY AA+E Q E
Sbjct: 1 MSNMIPMTARGAENLRIELEHLKTVRRPEIVSSIAVAREHGDLKENAEYHAAREEQGFCE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ ++E ++ ++ID++ ++ + R+ FG TV + + ++ Y +VGD EA+++
Sbjct: 61 GRVQDIEWKLSNCQIIDVTKIANNGRVIFGCTVKIYNTETEEEITYNLVGDDEANIKENR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SI+SPIAR L+GK + D+ V PGG +EI+ V +I
Sbjct: 121 ISINSPIARGLVGKSVDDVAMVKTPGGAIEFEIVSVEYI 159
>gi|313681806|ref|YP_004059544.1| transcription elongation factor grea [Sulfuricurvum kujiense DSM
16994]
gi|313154666|gb|ADR33344.1| transcription elongation factor GreA [Sulfuricurvum kujiense DSM
16994]
Length = 176
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 103/152 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P++ +G+D++ +E ++ + E+PR+ + A GD SENAEY AAKE + R+
Sbjct: 6 PMSPRGYDELLREFKYLKDIEKPRVNQEKQRAAELGDRSENAEYHAAKEKLRHIDKRLFY 65
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++I +A++ID S ++ R FGAT+++ + NS ++ +Y I G E++ ++GL+S+ SP
Sbjct: 66 LNSMIEKAQIIDPSVLNHSRAHFGATITIADINSDEEFSYTICGTLESEPENGLISVHSP 125
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+A++GKE GD SV+ PGG+K+YE+ + +
Sbjct: 126 LAKAMLGKEEGDEFSVHLPGGKKSYEVSAITY 157
>gi|126664880|ref|ZP_01735864.1| Transcription elongation factor [Marinobacter sp. ELB17]
gi|126631206|gb|EBA01820.1| Transcription elongation factor [Marinobacter sp. ELB17]
Length = 153
Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 100/141 (70%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G +++ EL+ + E+RPR+I +I+ AR +GDL ENAEY AA++ Q+ EGR+ E+
Sbjct: 1 MTTLGEARLRAELQKLKSEDRPRVIASIATAREHGDLKENAEYHAARDQQSFIEGRIQEI 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E + A+VID++T+ ++ FG TV L+ ++ + YQIVG+ EAD++ G +S+SSP
Sbjct: 61 EGKLGGAQVIDVTTIENTGKVIFGTTVHLLNTDTDKQVVYQIVGEDEADIKDGKISVSSP 120
Query: 126 IARALIGKELGDIISVNAPGG 146
IARAL+G+ G+++++ P G
Sbjct: 121 IARALVGRRAGEVVAIRVPSG 141
>gi|311069214|ref|YP_003974137.1| transcription elongation factor GreA [Bacillus atrophaeus 1942]
gi|310869731|gb|ADP33206.1| transcription elongation factor GreA [Bacillus atrophaeus 1942]
Length = 158
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 101/151 (66%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q EGR+
Sbjct: 7 FPMTEEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRVT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LEN+I A++I+ + + + G TV+ +E GD+++Y IVG EAD G +S S
Sbjct: 67 TLENMIRNAKIIEDDGGNSNIVGLGKTVTFIELPDGDEESYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA++LIGK++GD ++V PGGE +I+++
Sbjct: 127 PIAKSLIGKQVGDQVTVQTPGGEMLVKIVKI 157
>gi|146308634|ref|YP_001189099.1| transcription elongation factor GreA [Pseudomonas mendocina ymp]
gi|330504838|ref|YP_004381707.1| transcription elongation factor GreA [Pseudomonas mendocina NK-01]
gi|145576835|gb|ABP86367.1| transcription elongation factor GreA [Pseudomonas mendocina ymp]
gi|328919124|gb|AEB59955.1| transcription elongation factor GreA [Pseudomonas mendocina NK-01]
Length = 158
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 101/158 (63%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +G +++EL + RP + +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MNKYPMTVQGARALEEELAHLTKVRRPALSQAIAEARELGDLKENAEYHAAREEQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A +ID++++ ++ FG TV + + + YQIVG+ EAD++ G +
Sbjct: 61 RVRDIEGRLQNAVIIDVTSIEHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARAL+GK GD++ V P G YEI++V I
Sbjct: 121 SVGSPIARALVGKSEGDVVGVQTPSGLVEYEIVEVRHI 158
>gi|328474225|gb|EGF45030.1| transcription elongation factor GreA [Vibrio parahaemolyticus
10329]
Length = 152
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/145 (44%), Positives = 104/145 (71%), Gaps = 2/145 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G ++ EL R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQMLRTELE-RLLKLRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENTGKVIFGSTVTLIDVDTDEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPG 145
S+SSPIAR LIGK GD +++ P
Sbjct: 120 SVSSPIARGLIGKMEGDEVAIQTPA 144
>gi|194336836|ref|YP_002018630.1| transcription elongation factor GreA [Pelodictyon
phaeoclathratiforme BU-1]
gi|238693368|sp|B4SBF9|GREA_PELPB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|194309313|gb|ACF44013.1| transcription elongation factor GreA [Pelodictyon
phaeoclathratiforme BU-1]
Length = 159
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +TS G++++++EL + R +++ I+EARA+GDLSENAEY AA+E Q+ E
Sbjct: 1 MTDRIYLTSDGYNRLKEELYVLVHQTRREVLEKIAEARAHGDLSENAEYDAAREEQSHTE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119
R+A+LEN + A ++D + D++ +V L ++ D+ Y +V +EAD SG
Sbjct: 61 ARIADLENKLASATILDPKQIKTDKVYILTSVKLKNLDTPDEIIEYTLVSSEEADTDSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S+ SP+ RALIGK +G+ + + P GE YEIL++
Sbjct: 121 ISVRSPVGRALIGKAVGEKVQIVVPKGELHYEILEIF 157
>gi|126642719|ref|YP_001085703.1| transcription elongation factor GreA [Acinetobacter baumannii ATCC
17978]
gi|239503380|ref|ZP_04662690.1| transcription elongation factor GreA [Acinetobacter baumannii
AB900]
gi|126388603|gb|ABO13101.1| transcription elongation factor [Acinetobacter baumannii ATCC
17978]
Length = 158
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 97/144 (67%), Gaps = 1/144 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 RYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A+VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+
Sbjct: 63 QDIEGKLGAAQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGG 146
+SPIAR L+GK GD + + P G
Sbjct: 123 NSPIARGLLGKNEGDEVKITTPQG 146
>gi|169794963|ref|YP_001712756.1| transcription elongation factor GreA [Acinetobacter baumannii AYE]
gi|184159251|ref|YP_001847590.1| transcription elongation factor GreA [Acinetobacter baumannii
ACICU]
gi|213157626|ref|YP_002320424.1| transcription elongation factor GreA [Acinetobacter baumannii
AB0057]
gi|215482514|ref|YP_002324702.1| Transcription elongation factor greA (Transcript cleavage
factorgreA) [Acinetobacter baumannii AB307-0294]
gi|260556445|ref|ZP_05828663.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
19606]
gi|301346071|ref|ZP_07226812.1| transcription elongation factor GreA [Acinetobacter baumannii
AB056]
gi|301511499|ref|ZP_07236736.1| transcription elongation factor GreA [Acinetobacter baumannii
AB058]
gi|301595422|ref|ZP_07240430.1| transcription elongation factor GreA [Acinetobacter baumannii
AB059]
gi|332855122|ref|ZP_08435705.1| transcription elongation factor GreA [Acinetobacter baumannii
6013150]
gi|332868230|ref|ZP_08438072.1| transcription elongation factor GreA [Acinetobacter baumannii
6013113]
gi|332876148|ref|ZP_08443930.1| transcription elongation factor GreA [Acinetobacter baumannii
6014059]
gi|169147890|emb|CAM85753.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Acinetobacter baumannii AYE]
gi|183210845|gb|ACC58243.1| Transcription elongation factor [Acinetobacter baumannii ACICU]
gi|213056786|gb|ACJ41688.1| transcription elongation factor GreA [Acinetobacter baumannii
AB0057]
gi|213989115|gb|ACJ59414.1| Transcription elongation factor greA (Transcript cleavage
factorgreA) [Acinetobacter baumannii AB307-0294]
gi|260409704|gb|EEX03004.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
19606]
gi|322509165|gb|ADX04619.1| greA [Acinetobacter baumannii 1656-2]
gi|323519193|gb|ADX93574.1| transcription elongation factor GreA [Acinetobacter baumannii
TCDC-AB0715]
gi|332727625|gb|EGJ59044.1| transcription elongation factor GreA [Acinetobacter baumannii
6013150]
gi|332733491|gb|EGJ64661.1| transcription elongation factor GreA [Acinetobacter baumannii
6013113]
gi|332735646|gb|EGJ66691.1| transcription elongation factor GreA [Acinetobacter baumannii
6014059]
Length = 158
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 97/144 (67%), Gaps = 1/144 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 RYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A+VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+
Sbjct: 63 QDIEGKLGAAQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGG 146
+SPIAR L+GK GD + + P G
Sbjct: 123 NSPIARGLLGKNEGDEVKITTPQG 146
>gi|260549215|ref|ZP_05823435.1| transcription elongation factor greA [Acinetobacter sp. RUH2624]
gi|260407621|gb|EEX01094.1| transcription elongation factor greA [Acinetobacter sp. RUH2624]
Length = 158
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/144 (43%), Positives = 97/144 (67%), Gaps = 1/144 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 3 RYPMTPEGKIALEKELQHLKSVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A+VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +S+
Sbjct: 63 QDIEGKLGAAQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGG 146
+SPIAR L+GK GD + + P G
Sbjct: 123 NSPIARGLLGKNEGDEVKITTPQG 146
>gi|163790351|ref|ZP_02184783.1| transcription elongation factor GreA [Carnobacterium sp. AT7]
gi|159874422|gb|EDP68494.1| transcription elongation factor GreA [Carnobacterium sp. AT7]
Length = 157
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M++K+ P+T G K+++EL + + +R I++ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MIEKVYPMTLDGKKKLEEELEYLKTVKRKDIVERIKIARSFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +EN++ +E+ID S + D ++ G V+ +E GD++ Y IVG EAD GL
Sbjct: 61 EGRVTTIENMLRFSEIIDNSKTAADEVSLGRKVTFIELPDGDEEEYTIVGSAEADPFKGL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+AL+GK++G ++ PGG+ +I+++
Sbjct: 121 ISNDSPIAKALMGKKVGSEVTFATPGGDMFVKIVEI 156
>gi|89101202|ref|ZP_01174032.1| transcription elongation factor GreA [Bacillus sp. NRRL B-14911]
gi|89084088|gb|EAR63259.1| transcription elongation factor GreA [Bacillus sp. NRRL B-14911]
Length = 158
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 98/151 (64%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G +K++QEL + +R +++ I AR++GDLSEN+EY +AKE Q EGR+
Sbjct: 7 FPMTQAGKEKLEQELEHLKTVKRKDVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LEN+I A++I+ SGD + G +V+ VE G++++Y IVG EAD G +S S
Sbjct: 67 TLENMIRNAKIIEEDEASGDTVTLGRSVTFVELPDGEEESYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA++L+GK +GD ++V PGG+ + I +
Sbjct: 127 PIAKSLMGKRVGDEVTVQTPGGDMSVRITSI 157
>gi|328957198|ref|YP_004374584.1| transcription elongation factor GreA [Carnobacterium sp. 17-4]
gi|328673522|gb|AEB29568.1| transcription elongation factor GreA [Carnobacterium sp. 17-4]
Length = 157
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M++K+ P+T G K+++EL + + +R I++ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MIEKVYPMTLDGKQKLEEELEYLKTVKRKDIVERIKIARSFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +EN++ +E+ID S + D ++ G V+ +E GD++ Y IVG EAD +GL
Sbjct: 61 EGRVTTIENMLRFSEIIDNSNTATDEVSLGRKVTFIELPDGDEEEYTIVGSAEADPFNGL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+AL+GK++G ++ PGG+ I+++
Sbjct: 121 ISNDSPIAKALMGKKVGSEVTFGTPGGDMFVRIVEI 156
>gi|199597193|ref|ZP_03210625.1| Transcription elongation factor [Lactobacillus rhamnosus HN001]
gi|229552515|ref|ZP_04441240.1| elongation factor GreA [Lactobacillus rhamnosus LMS2-1]
gi|258508708|ref|YP_003171459.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG]
gi|258539888|ref|YP_003174387.1| transcription elongation factor GreA [Lactobacillus rhamnosus Lc
705]
gi|199591997|gb|EDZ00072.1| Transcription elongation factor [Lactobacillus rhamnosus HN001]
gi|229314067|gb|EEN80040.1| elongation factor GreA [Lactobacillus rhamnosus LMS2-1]
gi|257148635|emb|CAR87608.1| Transcription elongation factor greA [Lactobacillus rhamnosus GG]
gi|257151564|emb|CAR90536.1| Transcription elongation factor greA [Lactobacillus rhamnosus Lc
705]
gi|259650015|dbj|BAI42177.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG]
Length = 156
Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 105/156 (67%), Gaps = 3/156 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK P+T++G K++ EL + ++RP +I+ I AR +GDLSEN+EY+AAK+ Q+
Sbjct: 1 MADKSYPMTAEGKKKLENELEELKTKKRPEVIERIKVARGFGDLSENSEYEAAKDEQSTL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ++ ++ AE+ID ++ + ++ G V+ E GD++ Y+IVG EAD +G
Sbjct: 61 ENRIVTIQTMLRYAEIIDAKAVAKNEVSIGKKVTFEE--DGDEETYEIVGAAEADAFNGK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+ LIG+++GD +++N PGGE T +I +V
Sbjct: 119 ISNESPIAQGLIGRKVGDQVTINTPGGEMTVKITKV 154
>gi|295425284|ref|ZP_06817987.1| transcription elongation factor GreA [Lactobacillus amylolyticus
DSM 11664]
gi|295065060|gb|EFG55965.1| transcription elongation factor GreA [Lactobacillus amylolyticus
DSM 11664]
Length = 158
Score = 124 bits (310), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 96/142 (67%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T++G +K++ ELR + +RP +IK I AR+YGDLSEN+EY AAK+ Q+ E R+A
Sbjct: 6 FPMTAEGKEKLEAELRDLKLVKRPEVIKRIKVARSYGDLSENSEYDAAKDEQSHVEDRIA 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
++E ++ A+V+D ++ + +A G TV+ E D + Y IVG E+D +G +S S
Sbjct: 66 QVEEMLKYAQVVDADSVDPNEVAVGKTVTYTEVGEDDPETYTIVGSDESDPLNGKISNDS 125
Query: 125 PIARALIGKELGDIISVNAPGG 146
PIA+ALIGK+ G+ +S+ PGG
Sbjct: 126 PIAQALIGKKKGETVSITTPGG 147
>gi|313681690|ref|YP_004059428.1| transcription elongation factor grea [Sulfuricurvum kujiense DSM
16994]
gi|313154550|gb|ADR33228.1| transcription elongation factor GreA [Sulfuricurvum kujiense DSM
16994]
Length = 165
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 98/157 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T GF ++ EL + + P + I A+ YGDL EN+EY AA+E Q
Sbjct: 1 MEQKEPMTKYGFQRLSDELNTLKNIDLPAVNVEIDRAKEYGDLKENSEYHAAREKQAFIG 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AEL +I+RA+++D S + R++FG+TV L + S ++ Y IVG E++ GL+
Sbjct: 61 SRIAELGEVISRAQIVDPSELEHARVSFGSTVVLCDLESDEEVTYTIVGGCESNPDRGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+A+ L+G++ GD ++ PGG K +E+L+V +
Sbjct: 121 SFNSPLAKQLLGRQEGDELNAKLPGGTKNFEVLEVKY 157
>gi|330958059|gb|EGH58319.1| transcription elongation factor GreA [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 158
Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KYPMTVQGARALEEELAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A VID++T+ ++ FG TV + + ++ YQIVG+ EAD++ G +S+
Sbjct: 63 RDIEGRMQNAVVIDVTTIEPTGKVIFGTTVEIANVETDERVTYQIVGEDEADIKKGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALI KE GD++ V P G YEI++V I
Sbjct: 123 GSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158
>gi|325106003|ref|YP_004275657.1| transcription elongation factor GreA [Pedobacter saltans DSM 12145]
gi|324974851|gb|ADY53835.1| transcription elongation factor GreA [Pedobacter saltans DSM 12145]
Length = 157
Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 96/148 (64%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G + ++QEL++ + E R +I AI+EAR GDLSENAEY AAKE Q L+E ++A+LE
Sbjct: 8 TKEGLENLKQELQYLKTEGRAKIANAIAEARDKGDLSENAEYDAAKEAQALHETKIAKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
N + A +ID S + ++ + V + +G YQ+V + EAD++SG +S+ SPIA
Sbjct: 68 NTLANARLIDESKIDTTKVLALSIVKIKNVKNGATMTYQLVAENEADLKSGKISVKSPIA 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK +GD + P G+ +EIL +
Sbjct: 128 QGLLGKSVGDKAEITVPAGKMEFEILDI 155
>gi|149183148|ref|ZP_01861597.1| transcription elongation factor GreA [Bacillus sp. SG-1]
gi|148849131|gb|EDL63332.1| transcription elongation factor GreA [Bacillus sp. SG-1]
Length = 158
Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 97/151 (64%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G +K+++EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR++
Sbjct: 7 FPMTQEGKEKLEKELEQLKSVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIS 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LEN+I A++I M+ D + G +V+ +E GD++ Y IVG EAD G +S S
Sbjct: 67 TLENMIRNAKIIQEDEMNSDTVTLGKSVTFIELPDGDEETYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA++L+G ++G +SV PGGE +I V
Sbjct: 127 PIAKSLLGHKVGSEVSVQTPGGEMNVKITAV 157
>gi|52081213|ref|YP_080004.1| transcription elongation factor GreA [Bacillus licheniformis ATCC
14580]
gi|52786594|ref|YP_092423.1| transcription elongation factor GreA [Bacillus licheniformis ATCC
14580]
gi|319644819|ref|ZP_07999052.1| transcription elongation factor greA [Bacillus sp. BT1B_CT2]
gi|81384952|sp|Q65GT4|GREA_BACLD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|52004424|gb|AAU24366.1| transcription elongation factor [Bacillus licheniformis ATCC 14580]
gi|52349096|gb|AAU41730.1| GreA [Bacillus licheniformis ATCC 14580]
gi|317392628|gb|EFV73422.1| transcription elongation factor greA [Bacillus sp. BT1B_CT2]
Length = 158
Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 100/151 (66%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G K+++EL + + +R +++ I AR++GDLSEN+EY +AKE Q EGR+
Sbjct: 7 FPMTETGKKKLEEELEYLKTVKRKEVVERIKVARSFGDLSENSEYDSAKEEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L+N+I A++I+ + D ++ G TV+ E G++++Y IVG EAD G +S S
Sbjct: 67 TLDNMIRNAKIIEDDGANSDIVSLGKTVTFTELPDGEEESYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA++L+GK++GD ++V PGGE +I+++
Sbjct: 127 PIAKSLLGKQVGDEVTVQTPGGEMLVKIVKI 157
>gi|238854479|ref|ZP_04644818.1| transcription elongation factor [Lactobacillus jensenii 269-3]
gi|260665473|ref|ZP_05866320.1| transcription elongation factor GreB [Lactobacillus jensenii
SJ-7A-US]
gi|282934549|ref|ZP_06339801.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1]
gi|238832906|gb|EEQ25204.1| transcription elongation factor [Lactobacillus jensenii 269-3]
gi|260560741|gb|EEX26718.1| transcription elongation factor GreB [Lactobacillus jensenii
SJ-7A-US]
gi|281301387|gb|EFA93679.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1]
Length = 158
Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/141 (43%), Positives = 95/141 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T+ G +K++ EL+ + +RP +I+ I AR+YGDLSEN+EY AAK+ Q+ E R+A+
Sbjct: 7 PMTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAVEQRIAQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E ++ A+VID ++ + ++ G TV+ E D + Y IVG E+D +G +S SP
Sbjct: 67 VEQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGKISNDSP 126
Query: 126 IARALIGKELGDIISVNAPGG 146
IA+AL+GK GD +S+N PGG
Sbjct: 127 IAQALLGKHKGDTVSINTPGG 147
>gi|77456995|ref|YP_346500.1| transcription elongation factor GreA [Pseudomonas fluorescens
Pf0-1]
gi|77380998|gb|ABA72511.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Pseudomonas fluorescens Pf0-1]
Length = 158
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +G +++E + RP++ + I AR GDL ENAEY AA+E Q + E
Sbjct: 1 MNKYPMTVQGSKALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G +
Sbjct: 61 RIRDIEGRLQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKLGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARALI KE GD + V PGG+ YEI++V I
Sbjct: 121 SVGSPIARALIAKEEGDTVVVKTPGGDIEYEIVEVRHI 158
>gi|70734327|ref|YP_257967.1| transcription elongation factor GreA [Pseudomonas fluorescens Pf-5]
gi|68348626|gb|AAY96232.1| transcription elongation factor GreA [Pseudomonas fluorescens Pf-5]
Length = 158
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +G +++E + RP++ + I AR GDL ENAEY AA+E Q + E
Sbjct: 1 MNKYPMTVQGARALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + + VID++T+ ++ FG TV + + + YQIVG+ EAD++ G +
Sbjct: 61 RIRDIEGRLQNSVVIDVTTIPHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKLGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARALI KE GD+++V PGG YEI++V I
Sbjct: 121 SVGSPIARALIAKEEGDVVAVKTPGGVIEYEIVEVRHI 158
>gi|28871634|ref|NP_794253.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213966657|ref|ZP_03394808.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tomato T1]
gi|301383167|ref|ZP_07231585.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tomato Max13]
gi|302063398|ref|ZP_07254939.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tomato K40]
gi|302133771|ref|ZP_07259761.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|37999561|sp|Q87WP5|GREA_PSESM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|28854886|gb|AAO57948.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213928507|gb|EEB62051.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tomato T1]
gi|331016638|gb|EGH96694.1| transcription elongation factor GreA [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 158
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A VID++T++ ++ FG TV + + + YQIVG+ EAD++ G +S+
Sbjct: 63 RDIEGRMQNAVVIDVTTIAHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALI KE GD++ V P G YEI++V I
Sbjct: 123 GSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158
>gi|294505364|ref|YP_003569426.1| transcription elongation factor [Yersinia pestis Z176003]
gi|294355823|gb|ADE66164.1| transcription elongation factor [Yersinia pestis Z176003]
Length = 117
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 86/117 (73%), Gaps = 1/117 (0%)
Query: 43 LSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGD 101
+ ENAEY AA+E Q EGR+ E+E ++ A+VIDI+ M + R+ FGATV ++ N+ +
Sbjct: 1 MKENAEYHAAREQQGFCEGRIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNLNTEE 60
Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++NY+IVGD EAD + L+S++SPIAR LIGKE+ D++ ++ PGGE YEIL V ++
Sbjct: 61 EQNYRIVGDDEADFKQNLISVNSPIARGLIGKEVDDVVVIHTPGGEVEYEILSVEYV 117
>gi|194334369|ref|YP_002016229.1| transcription elongation factor GreA [Prosthecochloris aestuarii
DSM 271]
gi|238693346|sp|B4S9B2|GREA_PROA2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|194312187|gb|ACF46582.1| transcription elongation factor GreA [Prosthecochloris aestuarii
DSM 271]
Length = 160
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 2/158 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +T +G+++++ EL + R +++ I+EARA+GDLSENAEY+AA+E Q E
Sbjct: 1 MSDRIYLTKQGYNRMRDELNLLKTVVRKEVLEKIAEARAHGDLSENAEYEAAREQQAQME 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSG 118
++ +LEN +TRA ++D + DR+ +V L + D + Y +V +EAD G
Sbjct: 61 SKIVDLENKLTRASILDPKQIRTDRVYILTSVKLRNLDETDDEIIEYTLVSSEEADTDQG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S+ SP+ +ALIGK +G+ + ++ P GE YEIL++
Sbjct: 121 KISVRSPVGKALIGKAVGEKVQIHVPKGELHYEILEIF 158
>gi|291515359|emb|CBK64569.1| transcription elongation factor GreA [Alistipes shahii WAL 8301]
Length = 158
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 98/151 (64%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T++G+ KI+ EL + ERP I AI+EAR GDLSENAEY AA+E Q L E R+A
Sbjct: 6 IYLTAEGYKKIKDELEHMRSVERPAISAAIAEARDKGDLSENAEYDAAREAQGLLEMRIA 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LE+ + A VID S + ++ + V+L+ N+ + Y IV + EA+++ G ++I +
Sbjct: 66 KLEDTMANARVIDESKIDKSKVQILSKVTLLNHNNQKQMTYTIVAEHEANLREGKLAIGT 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA+AL+G++ GD + V P G +EIL +
Sbjct: 126 PIAKALLGRKKGDRVDVEVPAGTIHFEILDI 156
>gi|294501340|ref|YP_003565040.1| transcription elongation factor GreA [Bacillus megaterium QM B1551]
gi|295706687|ref|YP_003599762.1| transcription elongation factor GreA [Bacillus megaterium DSM 319]
gi|294351277|gb|ADE71606.1| transcription elongation factor GreA [Bacillus megaterium QM B1551]
gi|294804346|gb|ADF41412.1| transcription elongation factor GreA [Bacillus megaterium DSM 319]
Length = 158
Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 100/151 (66%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++QEL + + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+
Sbjct: 7 FPMTEEGKLKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LEN+I A++I+ + ++ G +V+ VE GD++ Y IVG EAD G +S S
Sbjct: 67 TLENMIRNAKIIEEDVENSSIVSLGKSVTFVELPDGDEETYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA++L+GK++GD ++V PGG+ + +I+ V
Sbjct: 127 PIAKSLMGKQIGDQVTVQTPGGDMSVKIVSV 157
>gi|302185422|ref|ZP_07262095.1| transcription elongation factor GreA [Pseudomonas syringae pv.
syringae 642]
Length = 158
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 97/156 (62%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KYPMTVQGARALEEELTHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A VID++T+ ++ FG TV + + + YQIVG+ EAD++ G +S+
Sbjct: 63 RDIEGRMQNAVVIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALI KE GD++ V P G YEI++V I
Sbjct: 123 GSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158
>gi|119357650|ref|YP_912294.1| transcription elongation factor GreA [Chlorobium phaeobacteroides
DSM 266]
gi|166200656|sp|A1BHJ3|GREA_CHLPD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|119354999|gb|ABL65870.1| transcription elongation factor GreA [Chlorobium phaeobacteroides
DSM 266]
Length = 159
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +T G++++++EL ++R +++ I+EARA+GDLSENAEY AA+E Q+L E
Sbjct: 1 MNDRIYLTRDGYNRLKEELYVLVHQKRKEVLEKIAEARAHGDLSENAEYDAAREEQSLTE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS-GDKKNYQIVGDQEADVQSGL 119
+A+LEN ++ A ++D + D++ +V L + + G+ Y +V +EAD G
Sbjct: 61 AHIADLENKLSTATILDPKQVKTDKVYILTSVKLRDLDKEGEIIEYTLVSSEEADTDLGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S+ SP+ RALIGK +G+ + + P GE YEIL++
Sbjct: 121 ISVRSPVGRALIGKTVGEKVQIMVPKGELHYEILEIF 157
>gi|110597704|ref|ZP_01385988.1| transcription elongation factor GreA [Chlorobium ferrooxidans DSM
13031]
gi|110340611|gb|EAT59091.1| transcription elongation factor GreA [Chlorobium ferrooxidans DSM
13031]
Length = 159
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 101/159 (63%), Gaps = 5/159 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +T G++++++EL E R +++ I+EARA+GDLSENAEY AA+E Q+ E
Sbjct: 1 MSDRIYLTRDGYNRLKEELYVLVHETRREVLEKIAEARAHGDLSENAEYDAAREEQSHTE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK---NYQIVGDQEADVQS 117
R+A+LEN + A ++D + D++ +V L +N D+K Y +V +EAD
Sbjct: 61 ARIADLENKLASATILDPKLIKTDKVYILTSVKL--RNLDDEKEIIEYTLVSSEEADTDL 118
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
G +S+ SP+ RALIGK +G+ + + P G+ YEIL++
Sbjct: 119 GKISVRSPVGRALIGKAVGEKVEIMVPKGKLHYEILEIF 157
>gi|213622659|ref|ZP_03375442.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213855714|ref|ZP_03383954.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 128
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 92/125 (73%), Gaps = 1/125 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++
Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVN 123
Query: 124 SPIAR 128
SPIAR
Sbjct: 124 SPIAR 128
>gi|227892809|ref|ZP_04010614.1| transcriptional elongation factor [Lactobacillus ultunensis DSM
16047]
gi|227865450|gb|EEJ72871.1| transcriptional elongation factor [Lactobacillus ultunensis DSM
16047]
Length = 159
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 99/142 (69%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T++G +K+Q EL+ + +RP +IK I AR++GDLSEN+EY AAK+ Q+ E R+A+
Sbjct: 7 PMTAEGKEKLQAELKNLKLVKRPEVIKRIKVARSFGDLSENSEYDAAKDEQSHVEDRIAQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G +S SP
Sbjct: 67 VEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDPETYTIVGSDESDPLNGKISNDSP 126
Query: 126 IARALIGKELGDIISVNAPGGE 147
IA+AL+GK+ G+ +S+ PGG+
Sbjct: 127 IAQALLGKKKGETVSITTPGGK 148
>gi|295136274|ref|YP_003586950.1| transcription elongation factor GreA [Zunongwangia profunda SM-A87]
gi|294984289|gb|ADF54754.1| transcription elongation factor GreA [Zunongwangia profunda SM-A87]
Length = 158
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 98/150 (65%), Gaps = 1/150 (0%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T++G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E ++A+LE
Sbjct: 8 TAEGLKKLRDELNHLKDVERPRASEAIAEARDKGDLSENAEYDAAKEAQGLLEMKIAKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
++ A VID S + ++ + V + +N+G + Y++V EAD+++G +S+ SPI
Sbjct: 68 EVVANARVIDESQLDTSKVLIHSHVKIKNQNNGAEVKYKLVAQSEADLKTGKISVDSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ L+GK++G++ + P G +E+L++ W
Sbjct: 128 KGLLGKKVGEVADIAVPSGTMKFEVLEI-W 156
>gi|71733247|ref|YP_276321.1| transcription elongation factor GreA [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|237798553|ref|ZP_04587014.1| transcription elongation factor GreA [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|257482271|ref|ZP_05636312.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289624592|ref|ZP_06457546.1| transcription elongation factor GreA [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289646951|ref|ZP_06478294.1| transcription elongation factor GreA [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298488446|ref|ZP_07006477.1| Transcription elongation factor GreA [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|71553800|gb|AAZ33011.1| transcription elongation factor GreA [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157071|gb|EFH98160.1| Transcription elongation factor GreA [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320322538|gb|EFW78631.1| transcription elongation factor GreA [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329993|gb|EFW85980.1| transcription elongation factor GreA [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330868236|gb|EGH02945.1| transcription elongation factor GreA [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330875233|gb|EGH09382.1| transcription elongation factor GreA [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330888668|gb|EGH21329.1| transcription elongation factor GreA [Pseudomonas syringae pv. mori
str. 301020]
gi|330963965|gb|EGH64225.1| transcription elongation factor GreA [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330987045|gb|EGH85148.1| transcription elongation factor GreA [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011488|gb|EGH91544.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331021406|gb|EGI01463.1| transcription elongation factor GreA [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 158
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/156 (41%), Positives = 97/156 (62%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A VID++T+ ++ FG TV + + + YQIVG+ EAD++ G +S+
Sbjct: 63 RDIEGRMQNAVVIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALI KE GD++ V P G YEI++V I
Sbjct: 123 GSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158
>gi|257869644|ref|ZP_05649297.1| prokaryotic transcription elongation factor GreA [Enterococcus
gallinarum EG2]
gi|257803808|gb|EEV32630.1| prokaryotic transcription elongation factor GreA [Enterococcus
gallinarum EG2]
Length = 159
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 107/156 (68%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEQELEELKTVKRGEIIERIKVARSFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LEN+I AE+ID + D ++ G TV+ +E GD++ Y IVG EAD SG
Sbjct: 61 EGRITTLENMIRFAEIIDNEGVDNDEVSIGKTVTFIELPDGDEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIARALIGK++ D ++++ PGG+ +I +V
Sbjct: 121 ISNDSPIARALIGKKINDEVTISTPGGDMLVKITEV 156
>gi|167754137|ref|ZP_02426264.1| hypothetical protein ALIPUT_02430 [Alistipes putredinis DSM 17216]
gi|167658762|gb|EDS02892.1| hypothetical protein ALIPUT_02430 [Alistipes putredinis DSM 17216]
Length = 158
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 98/151 (64%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T++G+ K++ EL + ERP I AI+EAR GDLSENAEY AA+E Q L E R+A
Sbjct: 6 IYLTAEGYKKLKDELDHMRSVERPAISAAIAEARDKGDLSENAEYDAAREAQGLLEMRIA 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
++E+ I A +ID S + ++ + V+L+ N+G + Y IV + EA+++ G ++I +
Sbjct: 66 KMEDTIANARIIDESKVDKSKVQILSRVTLLNHNTGKEVIYTIVAEHEANLREGKLAIGT 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA+AL+G + GD + V P G +EIL +
Sbjct: 126 PIAKALLGHKKGDRVDVTVPAGTIHFEILDI 156
>gi|305666121|ref|YP_003862408.1| transcription elongation factor greA [Maribacter sp. HTCC2170]
gi|88707555|gb|EAQ99798.1| transcription elongation factor greA [Maribacter sp. HTCC2170]
Length = 158
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 98/148 (66%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T++G ++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E R+++LE
Sbjct: 8 TAEGLKNLRDELNQLKDVERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLELRISKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + A +ID S + ++ +TV L + +G + Y +V + EAD+++G +S++SPI
Sbjct: 68 DTVANARLIDESQLDTSKVLVLSTVKLKNQANGMEMKYTLVAESEADLKTGKISVNSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GKE+GD + P G+ T+EIL++
Sbjct: 128 KGLLGKEVGDTAEITVPNGKITFEILEI 155
>gi|116617590|ref|YP_817961.1| transcription elongation factor GreA [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|122272209|sp|Q03YY4|GREA_LEUMM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116096437|gb|ABJ61588.1| transcription elongation factor GreA [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 160
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 93/141 (65%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T++G DK+Q EL +RP I K I AR+YGDLSEN+EYQ+AK+ Q EGR+
Sbjct: 8 PMTAEGRDKLQLELEDLIANQRPEITKRIQIARSYGDLSENSEYQSAKDEQAFVEGRIQT 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+N+I AE+ID + + D ++ G TV+ E + + + Y IVG EAD +G +S SP
Sbjct: 68 LKNMIDNAEIIDSNATAKDEVSLGKTVTFKELPNEEPETYAIVGSVEADPLAGKISNESP 127
Query: 126 IARALIGKELGDIISVNAPGG 146
+A ALIGK++G+ ++V P G
Sbjct: 128 MANALIGKKVGETVAVPLPNG 148
>gi|66047417|ref|YP_237258.1| transcription elongation factor GreA [Pseudomonas syringae pv.
syringae B728a]
gi|63258124|gb|AAY39220.1| Prokaryotic transcription elongation factor GreA [Pseudomonas
syringae pv. syringae B728a]
gi|330969641|gb|EGH69707.1| transcription elongation factor GreA [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 158
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 97/156 (62%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KYPMTVQGARALEEELTHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G +S+
Sbjct: 63 RDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALI KE GD++ V P G YEI++V I
Sbjct: 123 GSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158
>gi|312963093|ref|ZP_07777578.1| transcription elongation factor GreA [Pseudomonas fluorescens WH6]
gi|311282604|gb|EFQ61200.1| transcription elongation factor GreA [Pseudomonas fluorescens WH6]
Length = 158
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 97/156 (62%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +GF +++E + RP++ + I AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KYPMTVQGFKALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + + VID++T+ ++ FG TV + + + Y IVG+ EAD + G +S+
Sbjct: 63 RDIEGRLQNSVVIDVTTIPHTGKVIFGTTVEIANVETDESVVYHIVGEDEADFKLGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARALI KE GD+++V PGG YEI++V +
Sbjct: 123 GSPLARALIAKEEGDVVAVKTPGGVIEYEIVEVRHV 158
>gi|227432544|ref|ZP_03914528.1| elongation factor GreA [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227351722|gb|EEJ41964.1| elongation factor GreA [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 160
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/141 (45%), Positives = 93/141 (65%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T++G DK+Q EL +RP I K I AR+YGDLSEN+EYQ+AK+ Q EGR+
Sbjct: 8 PMTAEGRDKLQFELEDLIANQRPEITKRIQIARSYGDLSENSEYQSAKDEQAFVEGRIQT 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+N+I AE+ID + + D ++ G TV+ E + + + Y IVG EAD +G +S SP
Sbjct: 68 LKNMIDNAEIIDSNATAKDEVSLGKTVTFKELPNEEPETYAIVGSVEADPLAGKISNESP 127
Query: 126 IARALIGKELGDIISVNAPGG 146
+A ALIGK++G+ ++V P G
Sbjct: 128 MANALIGKKVGETVAVPLPNG 148
>gi|299822858|ref|ZP_07054744.1| transcription elongation factor GreA [Listeria grayi DSM 20601]
gi|299816387|gb|EFI83625.1| transcription elongation factor GreA [Listeria grayi DSM 20601]
Length = 168
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 94/151 (62%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + +R +++ I AR +GDLSEN+EY +AK+ Q EGR+
Sbjct: 15 FPMTLEGKAKLETELHELKTVKRKEVVERIKIARGFGDLSENSEYDSAKDEQAFVEGRIT 74
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LEN+I A++ID S D + G TV+ E GD++ Y IVG EAD G +S S
Sbjct: 75 TLENMIRNAQIIDALDASNDLVTLGKTVTFTEVPDGDEEAYTIVGSAEADPFEGRISNDS 134
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA+AL+G ++G+ + + PGGE T +I+ +
Sbjct: 135 PIAKALLGHKIGEEVEIQTPGGEMTVKIIAI 165
>gi|288572943|ref|ZP_06391300.1| transcription elongation factor GreA [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288568684|gb|EFC90241.1| transcription elongation factor GreA [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 164
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/155 (43%), Positives = 102/155 (65%), Gaps = 4/155 (2%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D I +T +G+D++ +EL+ + EER + + I EAR++GDLSENAEY AAK+ Q E R
Sbjct: 9 DGIEMTKEGYDRLYEELKRLRSEERYVVAQRIEEARSFGDLSENAEYAAAKDEQAKLESR 68
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSGLV 120
+ LE +++A+VID S++ G +A G TV + ++ G+KK +Y IVG +EAD + +
Sbjct: 69 IQRLEYQLSKAKVIDSSSLDGSHVALGTTVKI--EDIGNKKTFDYSIVGSEEADPKKSKI 126
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+GK GD ISV P G + IL++
Sbjct: 127 SSMSPVGQALMGKHPGDEISVKVPNGMRKLRILEI 161
>gi|325280567|ref|YP_004253109.1| transcription elongation factor GreA [Odoribacter splanchnicus DSM
20712]
gi|324312376|gb|ADY32929.1| transcription elongation factor GreA [Odoribacter splanchnicus DSM
20712]
Length = 158
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 93/149 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G K+Q+EL Q ERP+I KAI EA GD+SENAEY AAK+ Q L E ++A+L
Sbjct: 8 VTKEGLKKLQEELERLQNVERPKISKAIGEAIEKGDISENAEYDAAKDAQGLLEAKIAQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ I VID S + ++ V++ +G Y +V + EA+ + G +SI +PI
Sbjct: 68 KDTIATCRVIDESQIDTSKVQMLNKVTIKNTKTGATMTYTLVSETEANFKEGKLSIHTPI 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+AL+GK+LGD + V P GE +EI+ +
Sbjct: 128 AQALVGKKLGDKVMVKVPAGEMEFEIMDI 156
>gi|255533691|ref|YP_003094063.1| transcription elongation factor GreA [Pedobacter heparinus DSM
2366]
gi|255346675|gb|ACU06001.1| transcription elongation factor GreA [Pedobacter heparinus DSM
2366]
Length = 157
Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 99/155 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + T G DK+++EL++ + R I +AI+EAR GDLSENAEY AAKE Q L+E
Sbjct: 1 MTEVTYYTQDGLDKLKEELQYLKTTGRQLISRAIAEARDKGDLSENAEYDAAKEAQGLHE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A++E ++ A +ID S + ++ + V + +G +YQ+V + EAD+++G +
Sbjct: 61 AKIAKMEATLSTARLIDESKLDTSKVLALSIVKIKNVKNGATMSYQLVAESEADLKTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S+ SPIA+ L+GK +GD + P G+ +EIL++
Sbjct: 121 SVKSPIAKGLLGKSVGDTTEIEVPAGKMEFEILEI 155
>gi|289676014|ref|ZP_06496904.1| transcription elongation factor GreA [Pseudomonas syringae pv.
syringae FF5]
gi|330937936|gb|EGH41723.1| transcription elongation factor GreA [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330981080|gb|EGH79183.1| transcription elongation factor GreA [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 158
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 97/156 (62%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G +S+
Sbjct: 63 RDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALI KE GD++ V P G YEI++V I
Sbjct: 123 GSPIARALIAKEEGDVVVVKTPSGVIEYEIVEVRHI 158
>gi|284113334|ref|ZP_06386608.1| transcription elongation factor GreA [Candidatus Poribacteria sp.
WGA-A3]
gi|283829659|gb|EFC33987.1| transcription elongation factor GreA [Candidatus Poribacteria sp.
WGA-A3]
Length = 132
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 90/130 (69%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P+ I+ I+EAR +GDL ENAE++AAKE Q + RM+E+E+ + A+VI+ T + +
Sbjct: 1 PQNIQDIAEAREHGDLRENAEFKAAKERQQFIDTRMSEIEHKLGDAQVIESGTGPSETVV 60
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
FGATV L++ S ++K Y +VG +EAD+++G +S+ SPI RALI +GD++ VN P G
Sbjct: 61 FGATVRLLDVESEEQKTYTLVGQEEADLKNGSISVQSPIGRALISHRVGDVVQVNRPAGM 120
Query: 148 KTYEILQVLW 157
YEI ++ +
Sbjct: 121 IEYEIQEIFF 130
>gi|212638597|ref|YP_002315117.1| transcription elongation factor GreA [Anoxybacillus flavithermus
WK1]
gi|212560077|gb|ACJ33132.1| Transcription elongation factor GreA [Anoxybacillus flavithermus
WK1]
Length = 161
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 102/155 (65%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + P+T G +K++QEL + + +R +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 6 MEKEYPMTKAGKEKLEQELEYLKTVKRKEVVERIQIARSFGDLSENSEYDAAKDEQAFVE 65
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LEN+I A++I+ S D ++ G TV+ VE G++++Y IVG EAD G +
Sbjct: 66 SRIQMLENMIRNAKIIEEDLESTDIVSLGRTVTFVELPDGEEESYTIVGSAEADPFEGKI 125
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPIA++LIG+ +G+ ++V+ PGG+ +I+ V
Sbjct: 126 SNDSPIAKSLIGRRVGEEVTVHTPGGDMVVKIIAV 160
>gi|256850855|ref|ZP_05556244.1| transcription elongation factor GreB [Lactobacillus jensenii
27-2-CHN]
gi|260661066|ref|ZP_05861980.1| transcription elongation factor GreB [Lactobacillus jensenii
115-3-CHN]
gi|282934474|ref|ZP_06339729.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1]
gi|297205729|ref|ZP_06923124.1| transcription elongation factor GreA [Lactobacillus jensenii
JV-V16]
gi|256615917|gb|EEU21105.1| transcription elongation factor GreB [Lactobacillus jensenii
27-2-CHN]
gi|260548003|gb|EEX23979.1| transcription elongation factor GreB [Lactobacillus jensenii
115-3-CHN]
gi|281301421|gb|EFA93710.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1]
gi|297148855|gb|EFH29153.1| transcription elongation factor GreA [Lactobacillus jensenii
JV-V16]
Length = 158
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 95/141 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T+ G +K++ EL+ + +RP +I+ I AR+YGDLSEN+EY AAK+ Q+ E R+A+
Sbjct: 7 PMTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAVEQRIAQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E ++ A+VID ++ + ++ G TV+ E D + Y IVG E+D +G +S SP
Sbjct: 67 VEQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGKISNDSP 126
Query: 126 IARALIGKELGDIISVNAPGG 146
IA+AL+GK GD +S++ PGG
Sbjct: 127 IAQALLGKHKGDTVSISTPGG 147
>gi|149277461|ref|ZP_01883602.1| transcription elongation factor [Pedobacter sp. BAL39]
gi|149231694|gb|EDM37072.1| transcription elongation factor [Pedobacter sp. BAL39]
Length = 157
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 97/155 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + T G DK+++EL + R I KAI+EAR GDLSENAEY AAKE Q L+E
Sbjct: 1 MTEVTYYTQDGLDKLKEELHHMKTTGRQLISKAIAEARDKGDLSENAEYDAAKEAQGLHE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE ++ A +ID S + ++ + V + +G +YQ+V + EAD+++G +
Sbjct: 61 AKIAKLETTLSTARLIDESKLDTSKVLALSIVKIKNVKNGATMSYQLVAESEADLKTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S+ SPIA+ L+GK +GD + P G+ +EIL++
Sbjct: 121 SVKSPIAQGLLGKSVGDKTEIQVPAGKIEFEILEI 155
>gi|283778813|ref|YP_003369568.1| transcription elongation factor GreA [Pirellula staleyi DSM 6068]
gi|283437266|gb|ADB15708.1| transcription elongation factor GreA [Pirellula staleyi DSM 6068]
Length = 164
Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 102/157 (64%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D IP+T +G+ K++ EL + + P I + I++ARA GDL ENAEY A +E Q L +
Sbjct: 1 MDDYIPMTREGYAKLKAELDRMENVDMPDITQKIADARAEGDLKENAEYHAQREAQGLLQ 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ + N +++A +ID STM D+++FG TV + + + +++ + +VG E D +G +
Sbjct: 61 AKINLIRNKLSKASIIDPSTMPRDQVSFGTTVLVKDIDMDEEEEFTLVGAGEEDYNAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+ +AL+GK++GD++ V AP G EIL + +
Sbjct: 121 LITSPLGQALVGKKIGDVVDVPAPKGSYQLEILTLKF 157
>gi|315038835|ref|YP_004032403.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
1112]
gi|325957274|ref|YP_004292686.1| transcription elongation factor GreA [Lactobacillus acidophilus
30SC]
gi|312276968|gb|ADQ59608.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
1112]
gi|325333839|gb|ADZ07747.1| transcription elongation factor GreA [Lactobacillus acidophilus
30SC]
gi|327184004|gb|AEA32451.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
1118]
Length = 158
Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 99/142 (69%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ E R+A+
Sbjct: 7 PMTAEGKEKLQAELKNLKLVKRPEVIQRIKVARSFGDLSENSEYDAAKDEQSHVEDRIAQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G +S SP
Sbjct: 67 VEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDPETYTIVGSDESDPLNGKISNDSP 126
Query: 126 IARALIGKELGDIISVNAPGGE 147
IA+AL+GK+ G+ +S+ PGG+
Sbjct: 127 IAQALLGKKKGETVSITTPGGQ 148
>gi|330895316|gb|EGH27654.1| transcription elongation factor GreA [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 158
Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 97/156 (62%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G +S+
Sbjct: 63 RDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALI KE GD++ V P G YEI++V I
Sbjct: 123 GSPIARALIAKEEGDVVFVKTPSGVIEYEIVEVRHI 158
>gi|268319887|ref|YP_003293543.1| Transcription elongation factor greA [Lactobacillus johnsonii
FI9785]
gi|262398262|emb|CAX67276.1| Transcription elongation factor greA [Lactobacillus johnsonii
FI9785]
Length = 160
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 106/153 (69%), Gaps = 3/153 (1%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T++G +K+Q+EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MAEKVYPMTAEGKEKLQKELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ++E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G
Sbjct: 61 EQRIVQIEQMLKYAQVVDADSVDPNEVSIGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
+S SPIA+AL+GK+ G+ ++VN PGG T+++
Sbjct: 121 ISNDSPIAQALLGKKKGEKVTVNTPGG--TFDV 151
>gi|300871555|ref|YP_003786428.1| GreA/GreB family elongation factor [Brachyspira pilosicoli 95/1000]
gi|300689256|gb|ADK31927.1| GreA/GreB family elongation factor [Brachyspira pilosicoli 95/1000]
Length = 154
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 100/152 (65%), Gaps = 5/152 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQE--ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
P+T +G+DK++++L + E P II +EAR GDL ENAEY AA+E Q L + ++
Sbjct: 4 PITKEGYDKVKEKLSELKAEFDTLPAII---AEAREKGDLKENAEYHAAREKQGLLQAQI 60
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++LE+ + E++D S M+ D + FG V + +KNS Y+IVG+ EAD+ ++I
Sbjct: 61 SKLESDLAVCEIVDPSKMNKDIVTFGKRVKVKDKNSNAVSEYRIVGELEADMSKNEITIV 120
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+PIAR L+ K++GD++++ P G+K EIL++
Sbjct: 121 TPIARGLLTKKVGDVVTIKVPAGDKVLEILEI 152
>gi|302343822|ref|YP_003808351.1| GreA/GreB family elongation factor [Desulfarculus baarsii DSM 2075]
gi|301640435|gb|ADK85757.1| GreA/GreB family elongation factor [Desulfarculus baarsii DSM 2075]
Length = 155
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 98/149 (65%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G ++Q+EL ++ E P +KAI EARA+GDLSENAEY AAKE + ++AEL
Sbjct: 6 LTREGQIRLQRELDHLRKVELPASVKAIEEARAHGDLSENAEYHAAKERNAIVAAKIAEL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ + +EVID + R+ FG V++ + + ++ +YQIVG E+D G +S++SP+
Sbjct: 66 KSELALSEVIDPLPQADGRVVFGCKVTIYDSETDEEASYQIVGAAESDASQGRMSMTSPM 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GKE GD + V PGG + EI+ V
Sbjct: 126 GQALLGKEEGDEVKVQTPGGLRVIEIVSV 154
>gi|260103131|ref|ZP_05753368.1| transcription elongation factor GreA [Lactobacillus helveticus DSM
20075]
gi|260083041|gb|EEW67161.1| transcription elongation factor GreA [Lactobacillus helveticus DSM
20075]
gi|328464780|gb|EGF36095.1| transcription elongation factor GreA [Lactobacillus helveticus MTCC
5463]
Length = 158
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 99/142 (69%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ E R+A+
Sbjct: 7 PMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHVEDRIAQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G +S SP
Sbjct: 67 IEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDAETYTIVGSDESDPLNGKISNDSP 126
Query: 126 IARALIGKELGDIISVNAPGGE 147
IA+AL+GK+ G+ +S+ PGG+
Sbjct: 127 IAQALLGKKKGETVSITTPGGQ 148
>gi|21674267|ref|NP_662332.1| transcription elongation factor GreA [Chlorobium tepidum TLS]
gi|25452984|sp|Q8KCH5|GREA_CHLTE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|21647437|gb|AAM72674.1| transcription elongation factor GreA [Chlorobium tepidum TLS]
Length = 159
Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +T G++++++EL E R +++ I+EAR++GDLSENAEY AA+E Q+ E
Sbjct: 1 MSDRIYLTRDGYNRLKEELHLLMTETRKEVLEKIAEARSHGDLSENAEYDAAREEQSQLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119
++ E+EN + A ++D + DR+ +V L ++ D+ Y +V +EAD G
Sbjct: 61 AKIGEIENKLASATILDPKQIKTDRVYILTSVKLRNLDAEDEIIEYTLVSSEEADSDLGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S+ SP+ R+LIGK +GD ++++ P GE YEIL +
Sbjct: 121 ISVRSPVGRSLIGKSVGDKVTISVPKGELHYEILDIF 157
>gi|150003999|ref|YP_001298743.1| transcription elongation factor GreA [Bacteroides vulgatus ATCC
8482]
gi|254880754|ref|ZP_05253464.1| transcription elongation factor GreA [Bacteroides sp. 4_3_47FAA]
gi|294778035|ref|ZP_06743469.1| putative transcription elongation factor GreA [Bacteroides vulgatus
PC510]
gi|319639765|ref|ZP_07994495.1| transcription elongation factor GreA [Bacteroides sp. 3_1_40A]
gi|149932423|gb|ABR39121.1| transcription elongation factor GreA [Bacteroides vulgatus ATCC
8482]
gi|254833547|gb|EET13856.1| transcription elongation factor GreA [Bacteroides sp. 4_3_47FAA]
gi|294448093|gb|EFG16659.1| putative transcription elongation factor GreA [Bacteroides vulgatus
PC510]
gi|317388582|gb|EFV69431.1| transcription elongation factor GreA [Bacteroides sp. 3_1_40A]
Length = 154
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 102/151 (67%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ ++ +EL++ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++++L
Sbjct: 4 MSEEGYKQLIEELKYLESVERPKIVSAIAEARDKGDLSENAEYDAAKEAQGLLEMKISQL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ I A++ID S M+ D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 64 KSTIGDAKIIDTSKMNADTVQILTKVELKNAKTGMKMVYTIVAESEANLKLGKISVNTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GD+ + P G+ + E++ + +
Sbjct: 124 AQGLLGKKVGDVAEITIPQGKISLEVVNISF 154
>gi|116492493|ref|YP_804228.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC
25745]
gi|116102643|gb|ABJ67786.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC
25745]
Length = 160
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 100/150 (66%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G K+++EL + + RP++I+ I AR++GDLSEN+EY++AK+ Q++ E R+
Sbjct: 8 PMTLDGKAKLEEELETLKTKTRPQVIERIKIARSFGDLSENSEYESAKDEQSMVESRINT 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E+++ A++ID ++GD ++ G V E + + Y IVG EAD +G +S SP
Sbjct: 68 VEHMLHYAQIIDNDDIAGDEVSLGRVVEFKELPDEEPEEYTIVGAAEADPMTGKISNDSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA+AL+GK++GD +S+ PGG+ +IL V
Sbjct: 128 IAKALLGKKVGDEVSIATPGGDMKVKILTV 157
>gi|257867772|ref|ZP_05647425.1| prokaryotic transcription elongation factor GreA [Enterococcus
casseliflavus EC30]
gi|257874099|ref|ZP_05653752.1| prokaryotic transcription elongation factor GreA [Enterococcus
casseliflavus EC10]
gi|257876660|ref|ZP_05656313.1| prokaryotic transcription elongation factor GreA [Enterococcus
casseliflavus EC20]
gi|325571033|ref|ZP_08146605.1| transcription elongation factor GreA [Enterococcus casseliflavus
ATCC 12755]
gi|257801855|gb|EEV30758.1| prokaryotic transcription elongation factor GreA [Enterococcus
casseliflavus EC30]
gi|257808263|gb|EEV37085.1| prokaryotic transcription elongation factor GreA [Enterococcus
casseliflavus EC10]
gi|257810826|gb|EEV39646.1| prokaryotic transcription elongation factor GreA [Enterococcus
casseliflavus EC20]
gi|325156118|gb|EGC68304.1| transcription elongation factor GreA [Enterococcus casseliflavus
ATCC 12755]
Length = 159
Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/156 (46%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEQELEELKTVKRGEIIERIKVARSFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LEN+I AE+ID + D ++ G TV VE GD++ Y IVG EAD SG
Sbjct: 61 EGRITTLENMIRFAEIIDNEGVDSDEVSIGKTVIFVELPDGDEEEYMIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIARALIGK++ D ++++ PGG+ I +V
Sbjct: 121 ISNDSPIARALIGKKVNDEVTISTPGGDMQVRITEV 156
>gi|42519498|ref|NP_965428.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC
533]
gi|116630017|ref|YP_815189.1| transcription elongation factor [Lactobacillus gasseri ATCC 33323]
gi|227889550|ref|ZP_04007355.1| elongation factor GreA [Lactobacillus johnsonii ATCC 33200]
gi|238853796|ref|ZP_04644162.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4]
gi|282851368|ref|ZP_06260733.1| transcription elongation factor GreA [Lactobacillus gasseri 224-1]
gi|300361220|ref|ZP_07057397.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03]
gi|311110352|ref|ZP_07711749.1| transcription elongation factor GreA [Lactobacillus gasseri MV-22]
gi|41583786|gb|AAS09394.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC
533]
gi|116095599|gb|ABJ60751.1| transcription elongation factor GreA [Lactobacillus gasseri ATCC
33323]
gi|227850028|gb|EEJ60114.1| elongation factor GreA [Lactobacillus johnsonii ATCC 33200]
gi|238833605|gb|EEQ25876.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4]
gi|282557336|gb|EFB62933.1| transcription elongation factor GreA [Lactobacillus gasseri 224-1]
gi|300353839|gb|EFJ69710.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03]
gi|311065506|gb|EFQ45846.1| transcription elongation factor GreA [Lactobacillus gasseri MV-22]
gi|329667737|gb|AEB93685.1| transcription elongation factor GreA [Lactobacillus johnsonii DPC
6026]
Length = 160
Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 106/153 (69%), Gaps = 3/153 (1%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T++G +K+Q+EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MAEKVYPMTAEGKEKLQKELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ++E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G
Sbjct: 61 EQRIVQIEQMLKYAQVVDADSVDPNEVSIGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
+S SPIA+AL+GK+ G+ +++N PGG T+++
Sbjct: 121 ISNDSPIAQALLGKKKGEKVTINTPGG--TFDV 151
>gi|320103860|ref|YP_004179451.1| transcription elongation factor GreA [Isosphaera pallida ATCC
43644]
gi|319751142|gb|ADV62902.1| transcription elongation factor GreA [Isosphaera pallida ATCC
43644]
Length = 157
Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 101/154 (65%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P++ +G+DK++ +L + EE P+I + I+ AR +GDLSENAE+ AA E Q + +
Sbjct: 1 MDKVPMSKEGYDKLRAQLDHWKNEEMPKIAEQIALARGFGDLSENAEFDAAVEAQGMLQA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ +LE+ ++RA ++D + ++ DR+ FG V +++ + D++ + VG E D + +
Sbjct: 61 KINDLESKLSRAIIVDKNAVTTDRVVFGTRVKVLDLDCDDEEEFTFVGPGEEDYDNNKIL 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+SSPI + L+GK + D + VN P G + IL++
Sbjct: 121 LSSPIGQGLLGKSVNDEVCVNVPKGVLRFRILEI 154
>gi|296111138|ref|YP_003621519.1| transcription elongation factor GreA [Leuconostoc kimchii IMSNU
11154]
gi|295832669|gb|ADG40550.1| transcription elongation factor GreA [Leuconostoc kimchii IMSNU
11154]
Length = 160
Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 67/152 (44%), Positives = 96/152 (63%), Gaps = 1/152 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T++G DK+Q EL +RP I I AR+YGDLSEN+EYQ+AK+ Q EGR+
Sbjct: 7 FPMTAEGRDKLQTELEDLITRQRPEITTRIQIARSYGDLSENSEYQSAKDEQAFVEGRIQ 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L+ +I AE+ID + + D ++ G TV+ E + + Y IVG E+D SG +S S
Sbjct: 67 TLKKMIENAEIIDPNATAADEVSLGKTVTFKELPDEEAETYAIVGSTESDPLSGKISNES 126
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155
+A ALIGK++GD ++V P G+ T EIL+V
Sbjct: 127 AMAVALIGKKVGDKVAVPLPSGDNITVEILKV 158
>gi|323490029|ref|ZP_08095250.1| transcription elongation factor GreA [Planococcus donghaensis
MPA1U2]
gi|323396325|gb|EGA89150.1| transcription elongation factor GreA [Planococcus donghaensis
MPA1U2]
Length = 158
Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 100/153 (65%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T+ G K++ EL + + +R +++ I AR +GDLSENAEY +AKE Q EGR+
Sbjct: 6 QFPMTAAGKQKLEDELDFLKTIKRKEVVERIKIARDFGDLSENAEYDSAKEDQAFVEGRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+ LE++I A +I+ + ++ D + G TV+ +E GD+++Y IVG EAD G +S
Sbjct: 66 STLESMIRNAVIINENELNKDIVRLGTTVTFIEVPDGDQESYTIVGSAEADPLEGRISND 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPIA+++IG+ +G+ + V PGGE +IL ++
Sbjct: 126 SPIAKSMIGRTIGEHVKVLTPGGEMEIKILSIM 158
>gi|193213188|ref|YP_001999141.1| transcription elongation factor GreA [Chlorobaculum parvum NCIB
8327]
gi|238692652|sp|B3QPT8|GREA_CHLP8 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|193086665|gb|ACF11941.1| transcription elongation factor GreA [Chlorobaculum parvum NCIB
8327]
Length = 159
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/159 (38%), Positives = 100/159 (62%), Gaps = 5/159 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +T G++++++EL + R +++ I+EAR++GDLSENAEY AA+E Q+ E
Sbjct: 1 MSDRIYLTRDGYNRLKEELHLLSTQTRKEVLEKIAEARSHGDLSENAEYDAAREEQSQLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK---NYQIVGDQEADVQS 117
++ +LEN + A ++D + DR+ +V L +N D+ Y +V +EAD
Sbjct: 61 AKIGDLENKLASATILDPKQIKTDRVYILTSVKL--RNLDDEDEIIEYTLVSSEEADSDL 118
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
G +S+ SP+ RALIGK +GD ++++ P GE YEIL +
Sbjct: 119 GKISVRSPVGRALIGKSVGDKVTISVPKGELHYEILDIF 157
>gi|86135044|ref|ZP_01053626.1| transcription elongation factor GreA [Polaribacter sp. MED152]
gi|85821907|gb|EAQ43054.1| transcription elongation factor GreA [Polaribacter sp. MED152]
Length = 157
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 101/155 (65%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D + +G K+++EL +Q ERPR+ + I++AR GDLSENAEY AAKE Q+ E
Sbjct: 1 MSDISYYSPEGLKKLKEELHQLEQVERPRVTQEIADARDKGDLSENAEYHAAKEEQSHLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+L+N++ A ++D S + +I + V + +G + +Y++V D E DV++G +
Sbjct: 61 TKIAKLKNVVANARILDESQLDTSKILIHSNVKIKNTANGMEFSYRLVADSETDVRNGKL 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S++SPI + L+GKE+G+I + P G +EI+++
Sbjct: 121 SVNSPIGKGLLGKEVGEIAEIQVPSGIMKFEIVEI 155
>gi|212692849|ref|ZP_03300977.1| hypothetical protein BACDOR_02348 [Bacteroides dorei DSM 17855]
gi|237709534|ref|ZP_04540015.1| transcription elongation factor GreA [Bacteroides sp. 9_1_42FAA]
gi|237724871|ref|ZP_04555352.1| transcription elongation factor GreA [Bacteroides sp. D4]
gi|265754743|ref|ZP_06089795.1| transcription elongation factor GreA [Bacteroides sp. 3_1_33FAA]
gi|212664638|gb|EEB25210.1| hypothetical protein BACDOR_02348 [Bacteroides dorei DSM 17855]
gi|229436609|gb|EEO46686.1| transcription elongation factor GreA [Bacteroides dorei 5_1_36/D4]
gi|229456590|gb|EEO62311.1| transcription elongation factor GreA [Bacteroides sp. 9_1_42FAA]
gi|263234857|gb|EEZ20425.1| transcription elongation factor GreA [Bacteroides sp. 3_1_33FAA]
Length = 154
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 102/151 (67%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ ++ +EL++ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++++L
Sbjct: 4 MSEEGYKQLIEELKYLESVERPKIVSAIAEARDKGDLSENAEYDAAKEAQGLLEMKISQL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ I A++ID S M+ D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 64 KSTIGDAKIIDTSKMNADTVQILTKVELKNVKTGMKMVYTIVAESEANLKLGKISVNTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GD+ + P G+ + E++ + +
Sbjct: 124 AQGLLGKKVGDVAEITIPQGKISLEVVNISF 154
>gi|330877243|gb|EGH11392.1| transcription elongation factor GreA [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 158
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/153 (40%), Positives = 97/153 (63%), Gaps = 1/153 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A VID++T+ ++ FG TV + + ++ Y+IVG+ EA+++ G +S+
Sbjct: 63 RDIEGRMQNAVVIDVTTIPHTGKVIFGTTVEIANVETDERVTYKIVGEDEANIKDGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPIARALI KE GD++ V P G YEI++V
Sbjct: 123 GSPIARALIAKEEGDVVVVKTPSGVIEYEIIEV 155
>gi|313471842|ref|ZP_07812334.1| transcription elongation factor GreA [Lactobacillus jensenii 1153]
gi|313449010|gb|EEQ68245.2| transcription elongation factor GreA [Lactobacillus jensenii 1153]
Length = 151
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 94/140 (67%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G +K++ EL+ + +RP +I+ I AR+YGDLSEN+EY AAK+ Q+ E R+A++
Sbjct: 1 MTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAVEQRIAQV 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A+VID ++ + ++ G TV+ E D + Y IVG E+D +G +S SPI
Sbjct: 61 EQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGKISNDSPI 120
Query: 127 ARALIGKELGDIISVNAPGG 146
A+AL+GK GD +S+N PGG
Sbjct: 121 AQALLGKHKGDTVSINTPGG 140
>gi|309389965|gb|ADO77845.1| transcription elongation factor GreA [Halanaerobium praevalens DSM
2228]
Length = 160
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 100/155 (64%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D++ +T +GF+K++QEL + + E+R + K I AR +GD+SEN+EY AK Q E
Sbjct: 1 MADQVMLTEEGFEKLEQELEYLETEKRREVAKRIKVAREFGDISENSEYDDAKNEQAFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ E++N+++ A V+ ++ ++ G TV L + ++ ++ +Y +VG EAD + +
Sbjct: 61 GRIQEIKNMLSDAHVVKDDEVTDKKVNLGTTVMLNDLDNDEQISYTLVGSAEADPLNYKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +A++G +GD + V+ PGGE YEI+ +
Sbjct: 121 SNESPIGKAILGHAIGDQVKVDTPGGEVNYEIISI 155
>gi|293381813|ref|ZP_06627786.1| transcription elongation factor GreA [Lactobacillus crispatus
214-1]
gi|290921631|gb|EFD98660.1| transcription elongation factor GreA [Lactobacillus crispatus
214-1]
Length = 158
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 97/141 (68%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ E R+A+
Sbjct: 7 PMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHLEDRIAQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G +S SP
Sbjct: 67 VEEMLKYAQVVDAESVDPNEVSVGKTVTYTEVGTDDPETYTIVGSDESDPLNGKISNDSP 126
Query: 126 IARALIGKELGDIISVNAPGG 146
IA+AL+GK+ G+ +S+ PGG
Sbjct: 127 IAQALLGKKKGETVSITTPGG 147
>gi|260061565|ref|YP_003194645.1| transcription elongation factor GreA [Robiginitalea biformata
HTCC2501]
gi|88785697|gb|EAR16866.1| putative transcription elongation factor [Robiginitalea biformata
HTCC2501]
Length = 157
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 97/148 (65%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E ++A+LE
Sbjct: 8 TPEGMKKLKDELNHLRDVERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLEMKIAKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
++ A +ID S + ++ +TV L + +G + +Y +V + EAD+++G +S++SPI
Sbjct: 68 EVVANARLIDESQLDTSKVLVLSTVKLRNQQNGQELSYTLVAESEADLKAGKISVTSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK++GD + P G +++L++
Sbjct: 128 KGLLGKKVGDTAEIQVPNGTLKFDVLEI 155
>gi|239827818|ref|YP_002950442.1| transcription elongation factor GreA [Geobacillus sp. WCH70]
gi|239808111|gb|ACS25176.1| transcription elongation factor GreA [Geobacillus sp. WCH70]
Length = 159
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 99/152 (65%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q E R+
Sbjct: 7 QFPMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVEARI 66
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LEN+I A +I+ T + D ++ G +V+ +E G+++ Y IVG EAD G +S
Sbjct: 67 QTLENMIRNAVIIEEDTENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISND 126
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPIA++L+G+ +G+ ++V PGGE +I+ V
Sbjct: 127 SPIAKSLLGRRVGEEVTVQTPGGEMLVKIVAV 158
>gi|89889854|ref|ZP_01201365.1| transcription elongation factor, GreA/GreB [Flavobacteria bacterium
BBFL7]
gi|89518127|gb|EAS20783.1| transcription elongation factor, GreA/GreB [Flavobacteria bacterium
BBFL7]
Length = 158
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 95/148 (64%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +GF K++ EL+ + ERPR +AI+EAR GDLSENAEY AAKE Q + E R+++LE
Sbjct: 8 TEEGFKKLKDELKQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGMLEMRISKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+++ A +ID S + ++ + V + N+ NY++V E+D+ GL+S+ SPI
Sbjct: 68 AVVSNARIIDESDLDLSKVLIHSNVKIKNLNNKMVMNYKLVAQSESDITKGLISVDSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GKE+G++ P G EI+++
Sbjct: 128 KALLGKEVGEVAEAVVPVGTIKLEIMEI 155
>gi|283851364|ref|ZP_06368646.1| transcription elongation factor GreA [Desulfovibrio sp. FW1012B]
gi|283573314|gb|EFC21292.1| transcription elongation factor GreA [Desulfovibrio sp. FW1012B]
Length = 162
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ IP+T +GF + + R ++ERP II AI EAR GDL ENA Y+AA+E Q + E
Sbjct: 1 MESIPITVEGFRR-LERELERLKKERPAIILAIKEAREEGDLRENAGYEAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +E+ + R VID+ST+ GD++ FGATV + + ++GD K Y ++G EA+ G +S
Sbjct: 60 RINFIESRMPRFNVIDLSTLGGDQVIFGATVEIEDVDTGDIKKYTLLGPDEAEPSKGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ AL+GK GD I V+AP G+ YEI+ + +
Sbjct: 120 ILSPVGLALLGKYEGDEIVVDAPRGKINYEIVSITF 155
>gi|78187325|ref|YP_375368.1| GreA/GreB family elongation factor [Chlorobium luteolum DSM 273]
gi|78167227|gb|ABB24325.1| GreA/GreB family elongation factor [Chlorobium luteolum DSM 273]
Length = 176
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 101/159 (63%), Gaps = 5/159 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++ +T G++++++EL+ QE R +++ I+EAR++GDLSENAEY AA+E Q+ E
Sbjct: 18 MSERVYLTRDGYNRLKEELQVLVQETRKEVLEKIAEARSHGDLSENAEYDAAREEQSQTE 77
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK---NYQIVGDQEADVQS 117
R+A+LEN + A ++D + D++ +V L +N K Y +V +EAD
Sbjct: 78 SRIADLENKLASATILDPKQIKTDKVYILTSVEL--RNLDAPKEIIEYTLVSSEEADSDL 135
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
G +S+ SP+ RALIGK GD +++ P GE YEIL++
Sbjct: 136 GKISVRSPVGRALIGKTAGDKVTIVVPKGELHYEILKIF 174
>gi|327539251|gb|EGF25874.1| transcription elongation factor GreA [Rhodopirellula baltica WH47]
Length = 153
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 98/151 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++KI+ E+ + EE P I++ I+EAR GDL ENAEY A +E Q + ++ EL
Sbjct: 1 MTREGYNKIKAEINRMENEEMPMIVQKIAEAREEGDLKENAEYHAQRENQGMLMAKINEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I RA +ID+S++ D + FG TV++ + GD++ + +VG + D SG + ++SP
Sbjct: 61 RDKIARASIIDVSSLPKDEVVFGCTVTVEDVAYGDEEQFTLVGAGDEDYDSGKILVTSPF 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ L+GK++G+ V+ P G+ ++IL++ +
Sbjct: 121 GQGLVGKKVGETAEVDVPAGKLKFKILKIEF 151
>gi|227877749|ref|ZP_03995783.1| transcriptional elongation factor [Lactobacillus crispatus JV-V01]
gi|256843602|ref|ZP_05549090.1| transcription elongation factor [Lactobacillus crispatus 125-2-CHN]
gi|256850078|ref|ZP_05555508.1| transcriptional elongation factor [Lactobacillus crispatus
MV-1A-US]
gi|262047366|ref|ZP_06020323.1| transcriptional elongation factor [Lactobacillus crispatus
MV-3A-US]
gi|295693346|ref|YP_003601956.1| transcription elongation factor [Lactobacillus crispatus ST1]
gi|227862652|gb|EEJ70137.1| transcriptional elongation factor [Lactobacillus crispatus JV-V01]
gi|256615022|gb|EEU20223.1| transcription elongation factor [Lactobacillus crispatus 125-2-CHN]
gi|256713050|gb|EEU28041.1| transcriptional elongation factor [Lactobacillus crispatus
MV-1A-US]
gi|260572340|gb|EEX28903.1| transcriptional elongation factor [Lactobacillus crispatus
MV-3A-US]
gi|295031452|emb|CBL50931.1| Transcription elongation factor [Lactobacillus crispatus ST1]
Length = 158
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 97/141 (68%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ E R+A+
Sbjct: 7 PMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHLEDRIAQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E ++ A+V+D ++ + ++ G T++ E + D + Y IVG E+D +G +S SP
Sbjct: 67 VEEMLKYAQVVDAESVDPNEVSVGKTITYTEVGTDDPETYTIVGSDESDPLNGKISNDSP 126
Query: 126 IARALIGKELGDIISVNAPGG 146
IA+AL+GK+ G+ +S+ PGG
Sbjct: 127 IAQALLGKKKGETVSITTPGG 147
>gi|116495149|ref|YP_806883.1| transcription elongation factor [Lactobacillus casei ATCC 334]
gi|191638657|ref|YP_001987823.1| Transcription elongation factor GreA (Transcriptcleavage factor
GreA) [Lactobacillus casei BL23]
gi|227534836|ref|ZP_03964885.1| elongation factor GreA [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239632029|ref|ZP_04675060.1| transcription elongation factor [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301066713|ref|YP_003788736.1| transcription elongation factor [Lactobacillus casei str. Zhang]
gi|116105299|gb|ABJ70441.1| transcription elongation factor GreA [Lactobacillus casei ATCC 334]
gi|190712959|emb|CAQ66965.1| Transcription elongation factor GreA (Transcriptcleavage factor
GreA) [Lactobacillus casei BL23]
gi|227187592|gb|EEI67659.1| elongation factor GreA [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239526494|gb|EEQ65495.1| transcription elongation factor [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300439120|gb|ADK18886.1| Transcription elongation factor [Lactobacillus casei str. Zhang]
gi|327382699|gb|AEA54175.1| Elongation factor GreA [Lactobacillus casei LC2W]
gi|327385886|gb|AEA57360.1| Elongation factor GreA [Lactobacillus casei BD-II]
Length = 156
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 103/156 (66%), Gaps = 3/156 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK P+T++G K++ EL + ++RP +I I AR +GDLSEN+EY+AAK+ Q+
Sbjct: 1 MADKSYPMTAEGKKKLEDELEELKTKKRPEVIDRIKVARGFGDLSENSEYEAAKDEQSTL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ++ ++ AE+ID ++ + ++ G V+ E GD++ Y+IVG EAD +G
Sbjct: 61 ENRIVTIQTMLRYAEIIDSKAVAKNEVSLGKKVTFEE--DGDEETYEIVGAAEADAFNGK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+ LIG+++GD ++++ PGGE +I +V
Sbjct: 119 ISNESPIAQGLIGRKVGDKVTISTPGGEMKIKITKV 154
>gi|16079786|ref|NP_390610.1| transcription elongation factor GreA [Bacillus subtilis subsp.
subtilis str. 168]
gi|221310668|ref|ZP_03592515.1| transcription elongation factor GreA [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314991|ref|ZP_03596796.1| transcription elongation factor GreA [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319912|ref|ZP_03601206.1| transcription elongation factor GreA [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324193|ref|ZP_03605487.1| transcription elongation factor GreA [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321312257|ref|YP_004204544.1| transcription elongation factor GreA [Bacillus subtilis BSn5]
gi|3183527|sp|P80240|GREA_BACSU RecName: Full=Transcription elongation factor greA; AltName:
Full=General stress protein 20M; Short=GSP20M; AltName:
Full=Transcript cleavage factor greA
gi|2635178|emb|CAB14674.1| transcription elongation factor [Bacillus subtilis subsp. subtilis
str. 168]
gi|291485137|dbj|BAI86212.1| transcription elongation factor GreA [Bacillus subtilis subsp.
natto BEST195]
gi|320018531|gb|ADV93517.1| transcription elongation factor GreA [Bacillus subtilis BSn5]
Length = 157
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 101/151 (66%), Gaps = 1/151 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T++G K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q EGR+
Sbjct: 7 FPMTAEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRVT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LEN+I A++I+ S + + G TV+ VE GD+++Y IVG EAD G +S S
Sbjct: 67 TLENMIRNAKIIEDDGGS-NVVGLGKTVTFVELPDGDEESYTIVGSAEADPFEGKISNDS 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA++L+GK++ + ++V PGGE +I+++
Sbjct: 126 PIAKSLLGKKVDEEVTVQTPGGEMLVKIVKI 156
>gi|189347164|ref|YP_001943693.1| transcription elongation factor GreA [Chlorobium limicola DSM 245]
gi|238692161|sp|B3EE12|GREA_CHLL2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189341311|gb|ACD90714.1| transcription elongation factor GreA [Chlorobium limicola DSM 245]
Length = 159
Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/157 (37%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +T G++++++EL + R +++ I+EAR++GDLSENAEY AA+E Q+ E
Sbjct: 1 MSDRIYLTRDGYNRLKEELYVLIHQTRKEVLEKIAEARSHGDLSENAEYDAAREQQSQTE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGL 119
R+A+LEN ++ A ++D + D++ +V L D+ Y +V +EAD G
Sbjct: 61 ARIADLENKLSTATILDPKLIKTDKVYILTSVKLKNLQVEDEVIEYTLVSSEEADTDLGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S+ SP+ R+LIGK +GD + + P GE +EIL +
Sbjct: 121 ISVRSPVGRSLIGKTVGDKVHITVPKGELHFEILDIF 157
>gi|313206078|ref|YP_004045255.1| transcription elongation factor grea [Riemerella anatipestifer DSM
15868]
gi|312445394|gb|ADQ81749.1| transcription elongation factor GreA [Riemerella anatipestifer DSM
15868]
gi|315023743|gb|EFT36746.1| Transcription elongation factor GreA [Riemerella anatipestifer
RA-YM]
gi|325336482|gb|ADZ12756.1| Transcription elongation factor [Riemerella anatipestifer RA-GD]
Length = 155
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +K++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q L E ++++L
Sbjct: 4 VTKEGLEKMKAELEQLESVERPKITQQIAEARDKGDLSENAEYDAAKEAQGLLEMKISKL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+++I ++VID S + +++ TV L K + ++ + +V D E+D++SG +S+++PI
Sbjct: 64 KDLIATSKVIDESQLDISKVSILTTVKLFNKATKKEQVFTLVPDNESDLKSGKISVNTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEK-TYEILQV 155
A+ L+GK++G+ + P G + T+E+L +
Sbjct: 124 AKGLLGKKVGETAEITLPNGNQLTFEVLDI 153
>gi|312144281|ref|YP_003995727.1| transcription elongation factor GreA [Halanaerobium sp.
'sapolanicus']
gi|311904932|gb|ADQ15373.1| transcription elongation factor GreA [Halanaerobium sp.
'sapolanicus']
Length = 160
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 95/155 (61%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++ +T +GFDK++ EL + Q E+R + K I AR +GD+SEN+EY AK Q E
Sbjct: 1 MAEQLMLTEEGFDKLENELDYLQNEKRREVAKRIKVAREFGDISENSEYDDAKNEQAFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ E++N++ A V+ ++ ++ G TV L ++ K +Y +VG EAD + +
Sbjct: 61 GRIKEIKNMLNNAHVVKDEDVTDTKVNLGTTVMLYNLDNDTKISYTLVGSAEADPLNHKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +A++G +GD ++V P GE YEIL +
Sbjct: 121 SNESPIGKAILGHVIGDQVTVETPSGEAHYEILSI 155
>gi|256847484|ref|ZP_05552930.1| transcription elongation factor GreB [Lactobacillus coleohominis
101-4-CHN]
gi|256716148|gb|EEU31123.1| transcription elongation factor GreB [Lactobacillus coleohominis
101-4-CHN]
Length = 158
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 101/151 (66%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T++G +K++QEL + + RP +IK I AR+YGDLSEN+EY++AK+ Q EGR++
Sbjct: 7 FPMTAEGKEKLEQELEDLRLKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAFVEGRIS 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
++EN++ A +ID ++ D ++ G +V+ E + + Y IVG+ E+D SG +S S
Sbjct: 67 QIENMLQYAVIIDNDDVAADEVSMGRSVTFKELPDEEPETYTIVGESESDPLSGKISNES 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+A+ L+G ++G+ + ++ P G EI++V
Sbjct: 127 PMAKGLLGHKVGEKVDIDIPSGIMHVEIIEV 157
>gi|225010165|ref|ZP_03700637.1| transcription elongation factor GreA [Flavobacteria bacterium
MS024-3C]
gi|225005644|gb|EEG43594.1| transcription elongation factor GreA [Flavobacteria bacterium
MS024-3C]
Length = 158
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 97/148 (65%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E ++A++E
Sbjct: 8 TAEGLKKLKDELNQLRDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLELKIAKME 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I+ A +ID S + ++ +TV L +G + +Y +V + EAD++SG +S++SPI
Sbjct: 68 GILAGARLIDESQLDNSKVLVLSTVKLKNTQNGMQMSYTLVAESEADLKSGKISVNSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK++GDI + P G +EI+ +
Sbjct: 128 QGLLGKKVGDIAEIKVPNGTMGFEIVAI 155
>gi|313157566|gb|EFR56982.1| transcription elongation factor GreA [Alistipes sp. HGB5]
Length = 169
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 97/151 (64%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T++G+ K++ EL + ERP I AI+EAR GDLSENAEY AA+E Q + E R+A
Sbjct: 17 IYLTAEGYKKLRDELDHMRSVERPAISAAIAEARDKGDLSENAEYDAAREAQGMLEMRIA 76
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LE+ + A VID S + ++ + V+L+ N+ + Y IV + EA+++ G ++I +
Sbjct: 77 KLEDSLANARVIDESKIDKSKVQILSKVTLLNHNTKKEMVYTIVAEHEANLREGKLAIGT 136
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA+AL+G + GD + V P G +EIL +
Sbjct: 137 PIAKALLGHKKGDRVDVEVPAGTIHFEILDI 167
>gi|227518219|ref|ZP_03948268.1| transcription elongation factor GreA [Enterococcus faecalis TX0104]
gi|227554362|ref|ZP_03984409.1| transcription elongation factor GreA [Enterococcus faecalis HH22]
gi|229547587|ref|ZP_04436312.1| transcription elongation factor GreA [Enterococcus faecalis TX1322]
gi|229548206|ref|ZP_04436931.1| transcription elongation factor GreA [Enterococcus faecalis ATCC
29200]
gi|293382163|ref|ZP_06628106.1| transcription elongation factor GreA [Enterococcus faecalis R712]
gi|293388526|ref|ZP_06633030.1| transcription elongation factor GreA [Enterococcus faecalis S613]
gi|307268839|ref|ZP_07550206.1| transcription elongation factor GreA [Enterococcus faecalis TX4248]
gi|307272673|ref|ZP_07553921.1| transcription elongation factor GreA [Enterococcus faecalis TX0855]
gi|307275101|ref|ZP_07556255.1| transcription elongation factor GreA [Enterococcus faecalis TX2134]
gi|307278545|ref|ZP_07559617.1| transcription elongation factor GreA [Enterococcus faecalis TX0860]
gi|307287391|ref|ZP_07567450.1| transcription elongation factor GreA [Enterococcus faecalis TX0109]
gi|307290828|ref|ZP_07570722.1| transcription elongation factor GreA [Enterococcus faecalis TX0411]
gi|312900390|ref|ZP_07759700.1| transcription elongation factor GreA [Enterococcus faecalis TX0470]
gi|312902920|ref|ZP_07762117.1| transcription elongation factor GreA [Enterococcus faecalis TX0635]
gi|312905741|ref|ZP_07764763.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO
512]
gi|312909063|ref|ZP_07767923.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO
516]
gi|312952203|ref|ZP_07771081.1| transcription elongation factor GreA [Enterococcus faecalis TX0102]
gi|227074315|gb|EEI12278.1| transcription elongation factor GreA [Enterococcus faecalis TX0104]
gi|227176508|gb|EEI57480.1| transcription elongation factor GreA [Enterococcus faecalis HH22]
gi|229306685|gb|EEN72681.1| transcription elongation factor GreA [Enterococcus faecalis ATCC
29200]
gi|229307277|gb|EEN73264.1| transcription elongation factor GreA [Enterococcus faecalis TX1322]
gi|291080446|gb|EFE17810.1| transcription elongation factor GreA [Enterococcus faecalis R712]
gi|291082130|gb|EFE19093.1| transcription elongation factor GreA [Enterococcus faecalis S613]
gi|306498137|gb|EFM67660.1| transcription elongation factor GreA [Enterococcus faecalis TX0411]
gi|306501564|gb|EFM70860.1| transcription elongation factor GreA [Enterococcus faecalis TX0109]
gi|306504782|gb|EFM73980.1| transcription elongation factor GreA [Enterococcus faecalis TX0860]
gi|306508219|gb|EFM77335.1| transcription elongation factor GreA [Enterococcus faecalis TX2134]
gi|306510668|gb|EFM79690.1| transcription elongation factor GreA [Enterococcus faecalis TX0855]
gi|306514843|gb|EFM83391.1| transcription elongation factor GreA [Enterococcus faecalis TX4248]
gi|310628220|gb|EFQ11503.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO
512]
gi|310629859|gb|EFQ13142.1| transcription elongation factor GreA [Enterococcus faecalis TX0102]
gi|310633692|gb|EFQ16975.1| transcription elongation factor GreA [Enterococcus faecalis TX0635]
gi|311290625|gb|EFQ69181.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO
516]
gi|311292480|gb|EFQ71036.1| transcription elongation factor GreA [Enterococcus faecalis TX0470]
gi|315028152|gb|EFT40084.1| transcription elongation factor GreA [Enterococcus faecalis TX2137]
gi|315030868|gb|EFT42800.1| transcription elongation factor GreA [Enterococcus faecalis TX4000]
gi|315032284|gb|EFT44216.1| transcription elongation factor GreA [Enterococcus faecalis TX0017]
gi|315036236|gb|EFT48168.1| transcription elongation factor GreA [Enterococcus faecalis TX0027]
gi|315145421|gb|EFT89437.1| transcription elongation factor GreA [Enterococcus faecalis TX2141]
gi|315148786|gb|EFT92802.1| transcription elongation factor GreA [Enterococcus faecalis TX4244]
gi|315151674|gb|EFT95690.1| transcription elongation factor GreA [Enterococcus faecalis TX0012]
gi|315154526|gb|EFT98542.1| transcription elongation factor GreA [Enterococcus faecalis TX0031]
gi|315156395|gb|EFU00412.1| transcription elongation factor GreA [Enterococcus faecalis TX0043]
gi|315160114|gb|EFU04131.1| transcription elongation factor GreA [Enterococcus faecalis TX0312]
gi|315163267|gb|EFU07284.1| transcription elongation factor GreA [Enterococcus faecalis TX0645]
gi|315165929|gb|EFU09946.1| transcription elongation factor GreA [Enterococcus faecalis TX1302]
gi|315169337|gb|EFU13354.1| transcription elongation factor GreA [Enterococcus faecalis TX1341]
gi|315171809|gb|EFU15826.1| transcription elongation factor GreA [Enterococcus faecalis TX1342]
gi|315174754|gb|EFU18771.1| transcription elongation factor GreA [Enterococcus faecalis TX1346]
gi|315576267|gb|EFU88458.1| transcription elongation factor GreA [Enterococcus faecalis
TX0309B]
gi|315578907|gb|EFU91098.1| transcription elongation factor GreA [Enterococcus faecalis TX0630]
gi|315582758|gb|EFU94949.1| transcription elongation factor GreA [Enterococcus faecalis
TX0309A]
gi|327536067|gb|AEA94901.1| transcription elongation factor GreA [Enterococcus faecalis OG1RF]
gi|329573310|gb|EGG54923.1| transcription elongation factor GreA [Enterococcus faecalis TX1467]
Length = 188
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K++QEL + +R I++ I AR++GDLSEN+EY++AK+ Q
Sbjct: 30 MVEKVYPMTLEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV 89
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LEN+I AE+ID + D ++ G TV+ E G+++ Y IVG EAD SG
Sbjct: 90 EGRITTLENMIRFAEIIDNDGVDQDEVSIGKTVTFQELPDGEEEEYTIVGSAEADPFSGK 149
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+ALIGK+LGD + + PGG+ T +I +V
Sbjct: 150 ISNDSPIAQALIGKQLGDQVIIATPGGDMTVKITKV 185
>gi|300173857|ref|YP_003773023.1| transcription elongation factor greA [Leuconostoc gasicomitatum LMG
18811]
gi|299888236|emb|CBL92204.1| Transcription elongation factor greA [Leuconostoc gasicomitatum LMG
18811]
Length = 160
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 98/152 (64%), Gaps = 1/152 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T++G +K+Q EL +RP I K I AR+YGDLSEN+EYQ+AK+ Q EGR+
Sbjct: 7 FPMTAEGRNKLQAELEDLITNQRPEITKRIQIARSYGDLSENSEYQSAKDEQAFVEGRIQ 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L+ +I AE+ID + + D ++ G TV+ E + D + Y IVG E+D +G +S S
Sbjct: 67 TLKKMIENAEIIDPNATAADEVSLGKTVTFKELPNEDAETYAIVGSTESDPVAGKISNES 126
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155
+A AL+GK++GD ++V P G+ + EIL+V
Sbjct: 127 AMAVALLGKKVGDKVNVPLPSGDNISVEILKV 158
>gi|150009350|ref|YP_001304093.1| transcription elongation factor GreA [Parabacteroides distasonis
ATCC 8503]
gi|255016202|ref|ZP_05288328.1| transcription elongation factor GreA [Bacteroides sp. 2_1_7]
gi|256842355|ref|ZP_05547858.1| transcription elongation factor GreB [Parabacteroides sp. D13]
gi|262384735|ref|ZP_06077868.1| transcription elongation factor GreA [Bacteroides sp. 2_1_33B]
gi|298377865|ref|ZP_06987815.1| transcription elongation factor GreA [Bacteroides sp. 3_1_19]
gi|301312256|ref|ZP_07218173.1| transcription elongation factor GreA [Bacteroides sp. 20_3]
gi|149937774|gb|ABR44471.1| transcription elongation factor GreA [Parabacteroides distasonis
ATCC 8503]
gi|256735962|gb|EEU49293.1| transcription elongation factor GreB [Parabacteroides sp. D13]
gi|262293716|gb|EEY81651.1| transcription elongation factor GreA [Bacteroides sp. 2_1_33B]
gi|298265311|gb|EFI06974.1| transcription elongation factor GreA [Bacteroides sp. 3_1_19]
gi|300829678|gb|EFK60331.1| transcription elongation factor GreA [Bacteroides sp. 20_3]
Length = 156
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 94/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+DKI E+ + + +RP I I+EAR GDLSENAEY AAKE Q + E ++A+L
Sbjct: 6 MTKDGYDKILAEINYLETVKRPEISAQIAEARDKGDLSENAEYDAAKEAQGIMEAKLAQL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I+ A +ID S + D + V + + Y +V D EA+++ G +S+S+PI
Sbjct: 66 KGLISNARLIDESRVKTDEVQILNKVKIKNTKNNAVMTYTLVSDSEANLKEGKISVSTPI 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++GD++ + P G T+EI+ +
Sbjct: 126 AQGLMGKKVGDVVEIRVPSGLMTFEIMDI 154
>gi|323466134|gb|ADX69821.1| Transcription elongation factor [Lactobacillus helveticus H10]
Length = 158
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 98/142 (69%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ E R+A+
Sbjct: 7 PMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHVEDRIAQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G +S SP
Sbjct: 67 VEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDAETYTIVGSDESDPLNGKISNDSP 126
Query: 126 IARALIGKELGDIISVNAPGGE 147
IA+AL+GK+ G+ +S+ PG +
Sbjct: 127 IAQALLGKKKGETVSITTPGSQ 148
>gi|296333176|ref|ZP_06875629.1| transcription elongation factor GreA [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675318|ref|YP_003866990.1| transcription elongation factor GreA [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296149374|gb|EFG90270.1| transcription elongation factor GreA [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413562|gb|ADM38681.1| transcription elongation factor GreA [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 157
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 100/151 (66%), Gaps = 1/151 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q EGR+
Sbjct: 7 FPMTEEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRVT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LEN+I A++I+ S + + G TV+ VE GD+++Y IVG EAD G +S S
Sbjct: 67 TLENMIRNAKIIEDDGGS-NVVGLGKTVTFVELPDGDEESYTIVGSAEADPFEGKISNDS 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA++L+GK++ + ++V PGGE +I+++
Sbjct: 126 PIAKSLLGKKVDEEVTVQTPGGEMLVKIVKI 156
>gi|56963364|ref|YP_175095.1| transcription elongation factor GreA [Bacillus clausii KSM-K16]
gi|81366412|sp|Q5WHM1|GREA_BACSK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|56909607|dbj|BAD64134.1| transcriptional elongation factor GreA [Bacillus clausii KSM-K16]
Length = 158
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 98/149 (65%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K+++EL + R +++ I AR++GDLSEN+EY +AKE Q EGR+A+L
Sbjct: 9 MTAEGKKKLEEELHYLITTRRKEVVERIKVARSFGDLSENSEYDSAKEDQAFVEGRIAQL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A +I+ + G+ ++ G TV L+E G+++ Y IVG E+D G +S SP+
Sbjct: 69 EKMIRNAVMIENEKVDGNVVSLGKTVRLMELPDGEEEEYTIVGSAESDPFEGKISNDSPM 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A++L+GK + D + VN PGGE EIL++
Sbjct: 129 AQSLLGKTVNDRVVVNTPGGEMEVEILEI 157
>gi|229592647|ref|YP_002874766.1| transcription elongation factor GreA [Pseudomonas fluorescens
SBW25]
gi|229364513|emb|CAY52367.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Pseudomonas fluorescens SBW25]
Length = 158
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 96/156 (61%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++E + RP++ + I AR GDL ENAEY AA+E Q + E R+
Sbjct: 3 KYPMTVQGAKALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEARI 62
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A +ID++T+ ++ FG TV + + + Y IVG+ EAD + G +S+
Sbjct: 63 RDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYHIVGEDEADFKLGKISV 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARALI KE GD+++V PGG YEI++V +
Sbjct: 123 GSPLARALIAKEEGDVVAVKTPGGVIEYEIVEVRHV 158
>gi|322373858|ref|ZP_08048393.1| transcription elongation factor GreA [Streptococcus sp. C150]
gi|321277230|gb|EFX54300.1| transcription elongation factor GreA [Streptococcus sp. C150]
Length = 160
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 93/143 (65%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
++++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q EG++ LE I
Sbjct: 14 EQLEAELEEYKLVRRPEVVERIKVARSYGDLSENSEYEAAKDEQAFVEGQIQILETKIRY 73
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
AE++D ++ D +A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIG
Sbjct: 74 AEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGKISNESPIAQALIG 133
Query: 133 KELGDIISVNAPGGEKTYEILQV 155
K++GD +++ +P G + EIL V
Sbjct: 134 KKVGDKVAIESPAGSYSVEILSV 156
>gi|169632632|ref|YP_001706368.1| transcription elongation factor GreA [Acinetobacter baumannii SDF]
gi|238688251|sp|B0VSL8|GREA_ACIBS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|169151424|emb|CAP00158.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Acinetobacter baumannii]
Length = 158
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 96/146 (65%), Gaps = 1/146 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A+VI + + + R+ FG TV++ ++ ++ Y+IVGD EAD + +
Sbjct: 61 RIQDIEGKLGTAQVIAVKDLEQNGRVVFGVTVTIENLDTEERNTYKIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S++SPIA L+GK+ GD + + P G
Sbjct: 121 SVNSPIALGLLGKKEGDEVKITTPQG 146
>gi|29377378|ref|NP_816532.1| transcription elongation factor GreA [Enterococcus faecalis V583]
gi|255970856|ref|ZP_05421442.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis T1]
gi|255974431|ref|ZP_05425017.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis T2]
gi|256618301|ref|ZP_05475147.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis ATCC 4200]
gi|256761231|ref|ZP_05501811.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis T3]
gi|256852494|ref|ZP_05557870.1| transcription elongation factor GreA [Enterococcus faecalis T8]
gi|256958150|ref|ZP_05562321.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis DS5]
gi|256960296|ref|ZP_05564467.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis Merz96]
gi|256962732|ref|ZP_05566903.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis HIP11704]
gi|257077423|ref|ZP_05571784.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis JH1]
gi|257080712|ref|ZP_05575073.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis E1Sol]
gi|257083386|ref|ZP_05577747.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis Fly1]
gi|257088056|ref|ZP_05582417.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis D6]
gi|257091135|ref|ZP_05585496.1| prokaryotic transcription elongation factor greA [Enterococcus
faecalis CH188]
gi|257417082|ref|ZP_05594076.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis AR01/DG]
gi|257417796|ref|ZP_05594790.1| transcription elongation factor greA [Enterococcus faecalis T11]
gi|257420586|ref|ZP_05597576.1| transcription elongation factor greA [Enterococcus faecalis X98]
gi|294779657|ref|ZP_06745048.1| transcription elongation factor GreA [Enterococcus faecalis PC1.1]
gi|300860921|ref|ZP_07107008.1| transcription elongation factor GreA [Enterococcus faecalis TUSoD
Ef11]
gi|29344845|gb|AAO82602.1| transcription elongation factor GreA [Enterococcus faecalis V583]
gi|255961874|gb|EET94350.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis T1]
gi|255967303|gb|EET97925.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis T2]
gi|256597828|gb|EEU17004.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis ATCC 4200]
gi|256682482|gb|EEU22177.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis T3]
gi|256712348|gb|EEU27380.1| transcription elongation factor GreA [Enterococcus faecalis T8]
gi|256948646|gb|EEU65278.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis DS5]
gi|256950792|gb|EEU67424.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis Merz96]
gi|256953228|gb|EEU69860.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis HIP11704]
gi|256985453|gb|EEU72755.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis JH1]
gi|256988742|gb|EEU76044.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis E1Sol]
gi|256991416|gb|EEU78718.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis Fly1]
gi|256996086|gb|EEU83388.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis D6]
gi|256999947|gb|EEU86467.1| prokaryotic transcription elongation factor greA [Enterococcus
faecalis CH188]
gi|257158910|gb|EEU88870.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis ARO1/DG]
gi|257159624|gb|EEU89584.1| transcription elongation factor greA [Enterococcus faecalis T11]
gi|257162410|gb|EEU92370.1| transcription elongation factor greA [Enterococcus faecalis X98]
gi|294453314|gb|EFG21725.1| transcription elongation factor GreA [Enterococcus faecalis PC1.1]
gi|295114290|emb|CBL32927.1| transcription elongation factor GreA [Enterococcus sp. 7L76]
gi|300849960|gb|EFK77710.1| transcription elongation factor GreA [Enterococcus faecalis TUSoD
Ef11]
gi|323478879|gb|ADX78318.1| transcription elongation factor greA [Enterococcus faecalis 62]
Length = 159
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/156 (45%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K++QEL + +R I++ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LEN+I AE+ID + D ++ G TV+ E G+++ Y IVG EAD SG
Sbjct: 61 EGRITTLENMIRFAEIIDNDGVDQDEVSIGKTVTFQELPDGEEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+ALIGK+LGD + + PGG+ T +I +V
Sbjct: 121 ISNDSPIAQALIGKQLGDQVIIATPGGDMTVKITKV 156
>gi|295399312|ref|ZP_06809294.1| GreA/GreB family elongation factor [Geobacillus thermoglucosidasius
C56-YS93]
gi|312110127|ref|YP_003988443.1| transcription elongation factor GreA [Geobacillus sp. Y4.1MC1]
gi|294978778|gb|EFG54374.1| GreA/GreB family elongation factor [Geobacillus thermoglucosidasius
C56-YS93]
gi|311215228|gb|ADP73832.1| transcription elongation factor GreA [Geobacillus sp. Y4.1MC1]
Length = 158
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 98/150 (65%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q E R+
Sbjct: 8 PMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVEARIQT 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I+ T + D ++ G +V+ +E G+++ Y IVG EAD G +S SP
Sbjct: 68 LENMIRNAIIIEEDTENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISNDSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+G+ +G+ ++V PGGE +I+ V
Sbjct: 128 IAKSLLGRRVGEEVTVQTPGGEMLVKIVAV 157
>gi|227530498|ref|ZP_03960547.1| elongation factor GreA [Lactobacillus vaginalis ATCC 49540]
gi|227349603|gb|EEJ39894.1| elongation factor GreA [Lactobacillus vaginalis ATCC 49540]
Length = 158
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 99/151 (65%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++QEL + + RP +IK I AR+YGDLSEN+EY++AK+ Q EGR++
Sbjct: 7 FPMTLEGKQKLEQELEDLKMKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAFVEGRIS 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
++EN++ AE+ID + D ++ G V++ E + ++YQIVG+ E+D +G +S S
Sbjct: 67 QIENMLQYAEIIDNDDVDKDEVSMGRKVTIKELPDEEPESYQIVGESESDPFNGKISNES 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+A+ L+G ++G+ + + P G +IL V
Sbjct: 127 PMAKGLLGHKVGEEVEIEIPNGTMKVKILSV 157
>gi|15613839|ref|NP_242142.1| transcription elongation factor GreA [Bacillus halodurans C-125]
gi|20138372|sp|Q9KDD7|GREA_BACHD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|10173892|dbj|BAB04995.1| transcriptional elongation factor [Bacillus halodurans C-125]
Length = 158
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 98/149 (65%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K+++EL + + E R +++ I AR++GDLSEN+EY +AKE Q EGR++++
Sbjct: 9 MTLEGKKKLEEELEYLKTERRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRISQI 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I AE+I+ S + ++ G TV VE G+++ Y IVG E+D G +S SP+
Sbjct: 69 EKMIRNAEIIEESEGDANVVSLGKTVKFVEIPDGEEEEYTIVGSAESDPFEGKISNDSPM 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A++L+G + D++ VN PGGE +IL++
Sbjct: 129 AQSLLGHTIDDVVIVNTPGGEMEVKILEI 157
>gi|224023650|ref|ZP_03642016.1| hypothetical protein BACCOPRO_00357 [Bacteroides coprophilus DSM
18228]
gi|224016872|gb|EEF74884.1| hypothetical protein BACCOPRO_00357 [Bacteroides coprophilus DSM
18228]
Length = 154
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 96/146 (65%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ ELR+ + ERP+++ AI+EAR GDLSENAEY AAKE Q L E ++ +L
Sbjct: 4 MSEEGYQKLVAELRYLESVERPKVVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINQL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 64 KATIGDAKIIDTSKLKADTVQILSRVELKNVKTGMKMAYTIVSESEANLKQGKISVTTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
A+ L+GK++GD+ + P G+ + EI
Sbjct: 124 AQGLLGKKVGDVAEITIPQGKISLEI 149
>gi|228472777|ref|ZP_04057535.1| transcription elongation factor GreA [Capnocytophaga gingivalis
ATCC 33624]
gi|228275828|gb|EEK14594.1| transcription elongation factor GreA [Capnocytophaga gingivalis
ATCC 33624]
Length = 156
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 92/148 (62%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G ++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E ++A+LE
Sbjct: 7 TEEGLKALKAELDQLRDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLEMKIAKLE 66
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
++ A VID S + ++ +TV L K + Y +V + EAD+++G +S+SSPI
Sbjct: 67 ELVASARVIDESQLDTSKVLILSTVKLKNKANNAVMTYTLVAESEADLKTGKISVSSPIG 126
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
R L+GK +GDI + P G EI+++
Sbjct: 127 RGLLGKSVGDIAEIKVPNGILQMEIIEI 154
>gi|312864022|ref|ZP_07724258.1| transcription elongation factor GreA [Streptococcus vestibularis
F0396]
gi|322517498|ref|ZP_08070370.1| transcription elongation factor GreA [Streptococcus vestibularis
ATCC 49124]
gi|311100435|gb|EFQ58642.1| transcription elongation factor GreA [Streptococcus vestibularis
F0396]
gi|322123874|gb|EFX95437.1| transcription elongation factor GreA [Streptococcus vestibularis
ATCC 49124]
Length = 160
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 93/143 (65%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
++++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q EG++ LE I
Sbjct: 14 EQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQIQILETKIRY 73
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
AE++D ++ D +A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIG
Sbjct: 74 AEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGKISNESPIAQALIG 133
Query: 133 KELGDIISVNAPGGEKTYEILQV 155
K++GD +++ +P G + EIL V
Sbjct: 134 KKVGDKVAIESPAGSYSVEILSV 156
>gi|86143814|ref|ZP_01062190.1| putative transcription elongation factor [Leeuwenhoekiella
blandensis MED217]
gi|85829857|gb|EAQ48319.1| putative transcription elongation factor [Leeuwenhoekiella
blandensis MED217]
Length = 158
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 96/148 (64%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E R++++E
Sbjct: 8 TAEGLKKLKDELNQLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLEMRISKME 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
++ A +ID S + + +TV + + +G + Y++V EAD++SG +S+ SPI
Sbjct: 68 ELVANARIIDESQLDTSKALVHSTVKIKNQTNGMQMTYKLVAQSEADLKSGKISVDSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK++G++ V P G ++IL++
Sbjct: 128 KGLLGKKVGEVAEVQVPNGTMKFDILEI 155
>gi|116627175|ref|YP_819794.1| transcription elongation factor GreA [Streptococcus thermophilus
LMD-9]
gi|122268222|sp|Q03MH4|GREA_STRTD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116100452|gb|ABJ65598.1| transcription elongation factor GreA [Streptococcus thermophilus
LMD-9]
Length = 160
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 92/142 (64%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
+++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q EG++ LE I A
Sbjct: 15 QLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQIQILETKIRYA 74
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
E++D ++ D +A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK
Sbjct: 75 EIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGKISNESPIAQALIGK 134
Query: 134 ELGDIISVNAPGGEKTYEILQV 155
++GD +++ +P G + EIL V
Sbjct: 135 KVGDKVAIESPAGSYSVEILSV 156
>gi|228476529|ref|ZP_04061219.1| transcription elongation factor GreA [Streptococcus salivarius
SK126]
gi|228251950|gb|EEK10996.1| transcription elongation factor GreA [Streptococcus salivarius
SK126]
Length = 160
Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 93/143 (65%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
++++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q EG++ LE I
Sbjct: 14 EQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQIQILETKIRY 73
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
AE++D ++ D +A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIG
Sbjct: 74 AEIVDSDAVANDEVAIGKTVVVQEVGTNDKDTYHIVGAAGADIFSGKISNESPIAQALIG 133
Query: 133 KELGDIISVNAPGGEKTYEILQV 155
K++GD +++ +P G + EIL V
Sbjct: 134 KKVGDKVAIESPAGSYSVEILSV 156
>gi|58337782|ref|YP_194367.1| transcriptional elongation factor [Lactobacillus acidophilus NCFM]
gi|227904432|ref|ZP_04022237.1| transcriptional elongation factor [Lactobacillus acidophilus ATCC
4796]
gi|58255099|gb|AAV43336.1| transcriptional elongation factor [Lactobacillus acidophilus NCFM]
gi|227867807|gb|EEJ75228.1| transcriptional elongation factor [Lactobacillus acidophilus ATCC
4796]
Length = 158
Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 98/142 (69%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T++G +K++ EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ E R+A+
Sbjct: 7 PMTAEGKEKLEAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHLEDRIAQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E ++ A+V+D ++ + ++ G T++ E + D + Y IVG E+D +G +S SP
Sbjct: 67 VEEMLKYAQVVDAESVDPNEVSVGKTITYTEVGTDDPETYTIVGSDESDPLNGKISNDSP 126
Query: 126 IARALIGKELGDIISVNAPGGE 147
IA+AL+GK+ G+ +S+ PGG+
Sbjct: 127 IAQALLGKKKGETVSITTPGGQ 148
>gi|161507838|ref|YP_001577802.1| transcription elongation [Lactobacillus helveticus DPC 4571]
gi|160348827|gb|ABX27501.1| transcription elongation [Lactobacillus helveticus DPC 4571]
Length = 158
Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 97/142 (68%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+ E R+A+
Sbjct: 7 PMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHVEDRIAQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G +S SP
Sbjct: 67 VEEMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDAETYTIVGSDESDPLNGKISNDSP 126
Query: 126 IARALIGKELGDIISVNAPGGE 147
IA+AL+GK+ G+ +S+ PG +
Sbjct: 127 IAQALLGKKKGETVSITTPGSQ 148
>gi|55820339|ref|YP_138781.1| transcription elongation factor GreA [Streptococcus thermophilus
LMG 18311]
gi|55822230|ref|YP_140671.1| transcription elongation factor GreA [Streptococcus thermophilus
CNRZ1066]
gi|81559864|sp|Q5M1J6|GREA_STRT1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|81561040|sp|Q5M638|GREA_STRT2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|55736324|gb|AAV59966.1| transcription elongation factor [Streptococcus thermophilus LMG
18311]
gi|55738215|gb|AAV61856.1| transcription elongation factor [Streptococcus thermophilus
CNRZ1066]
gi|312277654|gb|ADQ62311.1| Transcription elongation factor greA [Streptococcus thermophilus
ND03]
Length = 160
Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 92/142 (64%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
+++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q EG++ LE I A
Sbjct: 15 QLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFIEGQIQILETKIRYA 74
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
E++D ++ D +A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK
Sbjct: 75 EIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGKISNESPIAQALIGK 134
Query: 134 ELGDIISVNAPGGEKTYEILQV 155
++GD +++ +P G + EIL V
Sbjct: 135 KVGDKVAIESPAGSYSVEILSV 156
>gi|56421082|ref|YP_148400.1| transcription elongation factor GreA [Geobacillus kaustophilus
HTA426]
gi|261418437|ref|YP_003252119.1| transcription elongation factor GreA [Geobacillus sp. Y412MC61]
gi|297529289|ref|YP_003670564.1| GreA/GreB family elongation factor [Geobacillus sp. C56-T3]
gi|319767603|ref|YP_004133104.1| transcription elongation factor GreA [Geobacillus sp. Y412MC52]
gi|81346788|sp|Q5KWV4|GREA_GEOKA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|56380924|dbj|BAD76832.1| transcription elongation factor [Geobacillus kaustophilus HTA426]
gi|261374894|gb|ACX77637.1| transcription elongation factor GreA [Geobacillus sp. Y412MC61]
gi|297252541|gb|ADI25987.1| GreA/GreB family elongation factor [Geobacillus sp. C56-T3]
gi|317112469|gb|ADU94961.1| transcription elongation factor GreA [Geobacillus sp. Y412MC52]
Length = 158
Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 97/150 (64%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q E R+
Sbjct: 8 PMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVESRIQM 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I+ + D ++ G +V+ +E G+++ Y IVG EAD G +S SP
Sbjct: 68 LENMIRNAVIIEEDKENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISNDSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+G+ +GD ++V PGGE +I+ V
Sbjct: 128 IAKSLLGRRVGDEVTVQTPGGEMLVKIVAV 157
>gi|326336154|ref|ZP_08202326.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325691663|gb|EGD33630.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 156
Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/148 (42%), Positives = 92/148 (62%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G ++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E ++A+LE
Sbjct: 7 TEEGLKALKAELDQLRDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLELKIAKLE 66
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
++ A VID S + ++ +TV L K + Y +V + EAD+++G +S+SSPI
Sbjct: 67 ELVANARVIDESQLDTSKVLILSTVKLKNKANNAIMTYTLVAESEADLKAGKISVSSPIG 126
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
R L+GK +GDI + P G EI+++
Sbjct: 127 RGLLGKSVGDIAEIKVPNGVLQMEIIEI 154
>gi|288555392|ref|YP_003427327.1| transcription elongation factor GreA [Bacillus pseudofirmus OF4]
gi|288546552|gb|ADC50435.1| transcription elongation factor GreA [Bacillus pseudofirmus OF4]
Length = 158
Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 95/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K+++EL + + E R +++ I AR++GDLSEN+EY +AKE Q EGR+A+L
Sbjct: 9 MTEDGKRKLEEELEFLKTERRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIAQL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A +I+ S ++ G V +E GD++ Y IVG E+D G +S SP+
Sbjct: 69 EKMIRNAVMIEEEAGSSHAVSLGKRVKFIELPDGDEEEYTIVGSAESDPAEGKISNDSPM 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A++++G+ +GD ++VN P GE EIL++
Sbjct: 129 AQSILGRSVGDKVTVNTPAGEMKIEILEI 157
>gi|332291987|ref|YP_004430596.1| transcription elongation factor GreA [Krokinobacter diaphorus
4H-3-7-5]
gi|332170073|gb|AEE19328.1| transcription elongation factor GreA [Krokinobacter diaphorus
4H-3-7-5]
Length = 158
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 94/148 (63%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G K++ EL + ERP+ + I++AR GDLSENAEY AAKE Q + E R+A+LE
Sbjct: 8 TPEGLKKLKDELNHLRDVERPKASQDIADARDKGDLSENAEYDAAKEAQGMLEMRIAKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
N+ + A +ID S + ++ +TV + + +G Y++V EAD++ GL+S+ SPI
Sbjct: 68 NLASNARIIDESQLDTSKVLVHSTVKIKNQINGATMTYKLVAQNEADIKKGLISVDSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GKE+G++ + P G ++++ +
Sbjct: 128 KGLLGKEVGEVAEIQVPSGVMKFDVVSI 155
>gi|268678843|ref|YP_003303274.1| transcription elongation factor GreA [Sulfurospirillum deleyianum
DSM 6946]
gi|268616874|gb|ACZ11239.1| transcription elongation factor GreA [Sulfurospirillum deleyianum
DSM 6946]
Length = 167
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 97/158 (61%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T G+ K+ EL ++ +RP + + AR++GDL ENAEY AAKE +
Sbjct: 1 MNTKEPMTEYGYKKLTDELSDLKKRQRPETVIELDIARSHGDLKENAEYHAAKEKLAFID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AEL ++++R++VID ST D++ FG+T++L + ++ Y IVG E++ GL+
Sbjct: 61 SRIAELSDLVSRSQVIDPSTYEHDKVRFGSTITLENLETNEEVTYSIVGSTESNPDLGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SP+++ L+G+ + + + + P G + Y IL + +
Sbjct: 121 SYHSPLSKQLMGRCVDEEVMIKLPVGTQEYAILNITYC 158
>gi|256819149|ref|YP_003140428.1| transcription elongation factor GreA [Capnocytophaga ochracea DSM
7271]
gi|315224575|ref|ZP_07866401.1| transcription elongation factor GreA [Capnocytophaga ochracea
F0287]
gi|256580732|gb|ACU91867.1| transcription elongation factor GreA [Capnocytophaga ochracea DSM
7271]
gi|314945441|gb|EFS97464.1| transcription elongation factor GreA [Capnocytophaga ochracea
F0287]
Length = 157
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 4/150 (2%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T++G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E ++A+LE
Sbjct: 8 TAEGLKKLRDELNQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLEMKIAKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSGLVSISSP 125
++ A +ID S + ++ +TV L KN +K Y +V + EAD+++G +S+SSP
Sbjct: 68 ELVANARIIDESQLDVSKVLVLSTVKL--KNLANKMEITYTLVAESEADLKAGKISVSSP 125
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
I + L+GK +G+I + P G EIL++
Sbjct: 126 IGKGLLGKSVGEIAEIKVPNGTLKLEILEI 155
>gi|152976794|ref|YP_001376311.1| transcription elongation factor GreA [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|189042233|sp|A7GT58|GREA_BACCN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|152025546|gb|ABS23316.1| transcription elongation factor GreA [Bacillus cytotoxicus NVH
391-98]
Length = 158
Score = 116 bits (291), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 94/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G +K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 8 PMTQEGKEKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I+ + + G TV+ E GD++ Y IVG EAD G +S SP
Sbjct: 68 LENMIRNAVIIEDTGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ + + PGGE EI+ V
Sbjct: 128 IAKSLLGKQIGEKVVIQTPGGEMQVEIISV 157
>gi|312892424|ref|ZP_07751919.1| GreA/GreB family elongation factor [Mucilaginibacter paludis DSM
18603]
gi|311295208|gb|EFQ72382.1| GreA/GreB family elongation factor [Mucilaginibacter paludis DSM
18603]
Length = 157
Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 101/155 (65%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D T +G +K+++EL++ + R I AI+EAR GDLSENAEY AAK+ Q +E
Sbjct: 1 MADVAYYTKEGLEKLKEELQYLKTTGRQIISNAIAEARDKGDLSENAEYDAAKDAQGHHE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE ++ A ++D S + ++ + V + +G +YQ+V + EAD++SG +
Sbjct: 61 AKIAKLEEAMSNARLLDDSKLDLSKVLALSIVKIKNLKNGATMSYQLVSESEADLKSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S +SPIA+ L+GK++G++I + P G+ +EIL++
Sbjct: 121 STASPIAKGLLGKKVGEVIEITVPAGKIDFEILEI 155
>gi|145220082|ref|YP_001130791.1| transcription elongation factor GreA [Prosthecochloris vibrioformis
DSM 265]
gi|189042244|sp|A4SFN0|GREA_PROVI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|145206246|gb|ABP37289.1| transcription elongation factor GreA [Chlorobium phaeovibrioides
DSM 265]
Length = 159
Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 100/159 (62%), Gaps = 5/159 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D++ +T G+++++ EL R +++ I+EAR++GDLSENAEY AA+E Q+ E
Sbjct: 1 MSDRVYLTRDGYNRLKDELHELLHVTRAEVLEKIAEARSHGDLSENAEYDAAREQQSQTE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK---NYQIVGDQEADVQS 117
R+A+LE+ ++ A ++D + D++ +V L+ N DKK Y +V +E+D
Sbjct: 61 ARIADLESKLSSATILDPKHIKTDKVYILTSVELL--NLDDKKETLEYTLVSSEESDSDL 118
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
G +S+ SP+ RALIGK +GD +++ P GE YE+ ++
Sbjct: 119 GKISVRSPVGRALIGKAVGDKVTIIVPKGELHYEVKKIF 157
>gi|323705605|ref|ZP_08117179.1| GreA/GreB family elongation factor [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535082|gb|EGB24859.1| GreA/GreB family elongation factor [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 157
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 99/155 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T G K+++EL + + +RP + + I +ARA+GDLSEN+EY AK Q E
Sbjct: 1 MGKQVILTYDGLKKLEEELDYLKSVKRPEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+A +E ++ A+VID ++ D+++ G TV + +++ ++ Y IVG EAD + +
Sbjct: 61 GRIATIEAMLRNAQVIDEEDITIDKVSVGCTVKVYDEDFKEEAEYTIVGSTEADPMNNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +AL+GK++GD ISV P G ++L++
Sbjct: 121 SDESPIGKALLGKKVGDTISVEVPAGIIKLKVLEI 155
>gi|218259539|ref|ZP_03475246.1| hypothetical protein PRABACTJOHN_00904 [Parabacteroides johnsonii
DSM 18315]
gi|218225022|gb|EEC97672.1| hypothetical protein PRABACTJOHN_00904 [Parabacteroides johnsonii
DSM 18315]
Length = 156
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 94/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+DKI E+ + + +RP I I+EAR GDLSENAEY AAKE Q + E ++A+L
Sbjct: 6 MTKDGYDKILAEINYLETVKRPEISAQIAEARDKGDLSENAEYDAAKEAQGIMEAKLAQL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I+ A +ID S + D + V + + Y +V D EA+++ G +++S+PI
Sbjct: 66 KGLISNARLIDESRVQTDEVQILNKVKIKNTKNNAVMTYTLVSDSEANLKEGKIAVSTPI 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++GDI+ + P G ++EI+ +
Sbjct: 126 AQGLMGKKVGDIVEIKVPSGMMSFEIMDI 154
>gi|229543750|ref|ZP_04432810.1| transcription elongation factor GreA [Bacillus coagulans 36D1]
gi|229328170|gb|EEN93845.1| transcription elongation factor GreA [Bacillus coagulans 36D1]
Length = 156
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 98/150 (65%), Gaps = 2/150 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G +K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q EGR+
Sbjct: 8 PMTQDGKEKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRITT 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+EN+I A++I+ D ++ G +V+ VE G+++ Y IVG EAD G +S SP
Sbjct: 68 IENMIRNAKIIEDD--GTDTVSLGKSVTFVELPDGEEETYTIVGSAEADPFEGKISNDSP 125
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK +G+ ++V PGG+ +I+ +
Sbjct: 126 IAKSLLGKSVGEEVTVQTPGGDMRVKIISI 155
>gi|227510504|ref|ZP_03940553.1| transcription elongation factor GreA [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227513513|ref|ZP_03943562.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC
11577]
gi|227524655|ref|ZP_03954704.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC
8290]
gi|227083386|gb|EEI18698.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC
11577]
gi|227088139|gb|EEI23451.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC
8290]
gi|227190156|gb|EEI70223.1| transcription elongation factor GreA [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 158
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 96/150 (64%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T++G DK+Q+EL + +RP++++ I AR+YGDLSEN+EY++AK+ Q++ E R+
Sbjct: 8 PMTAEGRDKLQKELEDLKVNQRPKVVERIKIARSYGDLSENSEYESAKDEQSMLESRITT 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E++I A++ID D + G V+ E + + Y IVG EAD SG +S SP
Sbjct: 68 IEHMIQYAQIIDSHDSDKDEVTVGKAVTFKELPDEEPETYTIVGAAEADPMSGKISNDSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA+ L+G L + + ++ P G+ +IL+V
Sbjct: 128 IAKGLLGHRLNEEVVIHIPAGDMKVKILEV 157
>gi|205374243|ref|ZP_03227042.1| transcription elongation factor GreA [Bacillus coahuilensis m4-4]
Length = 158
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 92/142 (64%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G +K++ EL + +R +++ I AR++GDLSEN+EY +AKE Q EGR+
Sbjct: 8 PMTQAGKEKLENELEQLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIVT 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE +I A++I M+ D + G TV+ VE G++++Y IVG EAD G +S SP
Sbjct: 68 LEAMIRNAKIIQEDEMNSDTVTLGKTVTFVELPDGEEESYTIVGSAEADPFEGKISNDSP 127
Query: 126 IARALIGKELGDIISVNAPGGE 147
IA++L+G+++ D +S+ PGGE
Sbjct: 128 IAKSLMGRKVEDEVSIQTPGGE 149
>gi|254457427|ref|ZP_05070855.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD
1]
gi|207086219|gb|EDZ63503.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD
1]
Length = 174
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 102/154 (66%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P++ +G+D + +E ++ + E+P+ + A A GD SENA+Y AAKE + R+
Sbjct: 2 KEPMSIEGYDLLVEEFKFLLEVEKPKTAEEKLVAAAQGDRSENADYHAAKEKLRFIDKRL 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L ++I ++++ID S+ ++++FG+TV ++ ++ +++ Y + G E++ + GL+S+
Sbjct: 62 FYLNSMIQKSQIIDPSSYEHNKVSFGSTVKILNIDTDEEETYTLCGVLESEPEHGLISVH 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA+ALIGKE+ D +N P G+K YEIL++ +
Sbjct: 122 SPIAKALIGKEVEDEFKINLPMGKKEYEILEIEY 155
>gi|255536258|ref|YP_003096629.1| Transcription elongation factor GreA [Flavobacteriaceae bacterium
3519-10]
gi|255342454|gb|ACU08567.1| Transcription elongation factor GreA [Flavobacteriaceae bacterium
3519-10]
Length = 170
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 102/150 (68%), Gaps = 1/150 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G DK++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q + E +++++
Sbjct: 19 VTKEGLDKMKAELEQLETIERPKITQQIAEARDKGDLSENAEYDAAKEAQGMLEMKISKI 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++I+ A+VID + + +++ TV L ++ ++ + +V D E+D++SG +S+++PI
Sbjct: 79 KDIVINAKVIDETQLDTSKVSILTTVRLKNNDTKAEQKFTLVPDNESDLKSGRISVNTPI 138
Query: 127 ARALIGKELGDIISVNAPGGEK-TYEILQV 155
A+ L+GK +G+ + P G K ++E+L++
Sbjct: 139 AKGLLGKTVGEKADIVLPNGNKLSFEVLEI 168
>gi|86131276|ref|ZP_01049875.1| transcription elongation factor GreA/GreB family protein [Dokdonia
donghaensis MED134]
gi|85818687|gb|EAQ39847.1| transcription elongation factor GreA/GreB family protein [Dokdonia
donghaensis MED134]
Length = 158
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 93/148 (62%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T++G K++ EL + ERP+ + I++AR GDLSENAEY AAKE Q + E R+++LE
Sbjct: 8 TAEGLQKLKDELNHLRDVERPKASQDIADARDKGDLSENAEYDAAKEAQGMLEMRISKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ A +ID S + ++ +TV + + +G Y++V EAD++ GL+S+ SPI
Sbjct: 68 ELAANARIIDESQLDTSKVLVHSTVKIKNQTNGATMTYKLVAQNEADIKKGLISVDSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GKE+GD+ + P G ++++ +
Sbjct: 128 KGLLGKEVGDVAEIQVPSGIMKFDVVSI 155
>gi|313886047|ref|ZP_07819785.1| transcription elongation factor GreA [Porphyromonas asaccharolytica
PR426713P-I]
gi|332299382|ref|YP_004441303.1| transcription elongation factor GreA [Porphyromonas asaccharolytica
DSM 20707]
gi|312924577|gb|EFR35348.1| transcription elongation factor GreA [Porphyromonas asaccharolytica
PR426713P-I]
gi|332176445|gb|AEE12135.1| transcription elongation factor GreA [Porphyromonas asaccharolytica
DSM 20707]
Length = 156
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 95/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D + ++ + EERP++ + I+EAR GDLSENAEY AAKE Q E ++A L
Sbjct: 6 MTQEGYDALNNTIKQLEAEERPKVTQQIAEARDKGDLSENAEYDAAKEAQAHLEDKIAML 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + A V++ S + D + V L+ K G++K+Y IV D EA+ + +S+++PI
Sbjct: 66 KAQLGNARVLEPSQIKTDEVQILNHVRLLNKKKGEEKSYYIVSDAEANFKENKISVNTPI 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++GDI + P G +EIL++
Sbjct: 126 AKGLLGKKVGDIAEIQVPAGTLVFEILEI 154
>gi|213964046|ref|ZP_03392289.1| transcription elongation factor GreA [Capnocytophaga sputigena
Capno]
gi|213953328|gb|EEB64667.1| transcription elongation factor GreA [Capnocytophaga sputigena
Capno]
Length = 157
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 95/150 (63%), Gaps = 4/150 (2%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E ++A+LE
Sbjct: 8 TPEGLKKLRDELNQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLEMKIAKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSGLVSISSP 125
++ A +ID S + ++ +TV L KN +K Y +V + EAD+++G +S+SSP
Sbjct: 68 ELVANARIIDESQLDVSKVLVLSTVKL--KNLANKMEITYTLVAESEADLKAGKISVSSP 125
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
I + L+GK +G+I + P G EIL++
Sbjct: 126 IGKGLLGKSVGEIAEIKVPNGTLKMEILEI 155
>gi|300774299|ref|ZP_07084163.1| transcription elongation factor GreA [Chryseobacterium gleum ATCC
35910]
gi|300506943|gb|EFK38077.1| transcription elongation factor GreA [Chryseobacterium gleum ATCC
35910]
Length = 156
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 101/150 (67%), Gaps = 1/150 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +K++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q + E R+++L
Sbjct: 5 VTKEGLEKMKAELEQLETVERPKITQQIAEARDKGDLSENAEYDAAKEAQGMLEMRISKL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+++I+ +++ID S + +++ TV L + ++ + +V D E+D+++G +S+++PI
Sbjct: 65 KDVISTSKIIDESQLDTSKVSILTTVKLKNNATKQEQVFTLVPDNESDLKTGKISVNTPI 124
Query: 127 ARALIGKELGDIISVNAPGGEK-TYEILQV 155
A+ L+GK +G+ + P G K ++E+L +
Sbjct: 125 AKGLLGKAIGETAEITLPNGNKLSFEVLDI 154
>gi|298206886|ref|YP_003715065.1| putative transcription elongation factor [Croceibacter atlanticus
HTCC2559]
gi|83849520|gb|EAP87388.1| putative transcription elongation factor [Croceibacter atlanticus
HTCC2559]
Length = 158
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E ++++LE
Sbjct: 8 TEEGLKKLRDELDLLRDVERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLEMKISKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+++ A VID S + ++ ++V + + +G + Y++V E+D++SG +S+ SPI
Sbjct: 68 GVLSNARVIDDSQLDTSKVLIHSSVKIKHQGNGAEMTYKLVAQSESDLKSGKISVDSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ L+GK+ GD+ V P G +++++V W
Sbjct: 128 KGLLGKQEGDVAEVTTPNGTIKFDVIKV-W 156
>gi|229175053|ref|ZP_04302571.1| Transcription elongation factor greA [Bacillus cereus MM3]
gi|228608421|gb|EEK65725.1| Transcription elongation factor greA [Bacillus cereus MM3]
Length = 161
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 95/150 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 11 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I + + G TV+ E GD+++Y IVG EAD G +S SP
Sbjct: 71 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPGGDEESYTIVGSAEADPFEGRISNDSP 130
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 131 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 160
>gi|312870533|ref|ZP_07730651.1| transcription elongation factor GreA [Lactobacillus oris
PB013-T2-3]
gi|311093930|gb|EFQ52256.1| transcription elongation factor GreA [Lactobacillus oris
PB013-T2-3]
Length = 158
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 96/151 (63%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + + RP +IK I AR+YGDLSEN+EY++AK+ Q + E R+A
Sbjct: 7 FPMTLEGKQKLEDELEEYKMKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAMVESRIA 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
++EN++ AE+ID + D ++ G +V+ E + + Y IVG+ E+D SG +S S
Sbjct: 67 QIENMLQYAEIIDNEDVDKDEVSMGRSVTFKELPDEEPETYSIVGESESDPLSGKISNES 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+A+ L+G ++G+ + + P G +IL V
Sbjct: 127 PMAKGLLGHKIGEEVEIEIPSGTMKVKILDV 157
>gi|189499862|ref|YP_001959332.1| transcription elongation factor GreA [Chlorobium phaeobacteroides
BS1]
gi|238692290|sp|B3EPH3|GREA_CHLPB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189495303|gb|ACE03851.1| transcription elongation factor GreA [Chlorobium phaeobacteroides
BS1]
Length = 160
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 99/160 (61%), Gaps = 6/160 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D++ +T G+++++ EL + + R +++ I+EARA+GDLSENAEY AA+E Q E
Sbjct: 1 MSDRVYLTKDGYNRLRDELTVLKSDVRKEVLEKIAEARAHGDLSENAEYDAAREQQRQLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK----NYQIVGDQEADVQ 116
++ +LE+ +TRA ++D + DR+ +V L KN +K Y +V EAD
Sbjct: 61 NKIGDLESKLTRATILDPKQVKTDRVYILTSVKL--KNLDAQKEEIIEYTLVSSDEADTD 118
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
G +S+ SP+ ++L+GK +GD + + P GE YEIL++
Sbjct: 119 LGKISVRSPVGKSLLGKAVGDKVQIQVPKGELHYEILEIF 158
>gi|228954664|ref|ZP_04116687.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228981071|ref|ZP_04141372.1| Transcription elongation factor greA [Bacillus thuringiensis Bt407]
gi|228778612|gb|EEM26878.1| Transcription elongation factor greA [Bacillus thuringiensis Bt407]
gi|228804991|gb|EEM51587.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 161
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 94/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 11 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP
Sbjct: 71 LENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 130
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 131 IAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 160
>gi|332520122|ref|ZP_08396586.1| transcription elongation factor GreA [Lacinutrix algicola 5H-3-7-4]
gi|332044681|gb|EGI80875.1| transcription elongation factor GreA [Lacinutrix algicola 5H-3-7-4]
Length = 157
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 97/148 (65%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T++G K+++EL+ + ER + AI+EAR GDLSENAEY AAKE Q + E R+++LE
Sbjct: 8 TAEGLKKLREELKHLKDVERVKASNAIAEARDKGDLSENAEYDAAKEAQGMLEMRISKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + A +ID S M +I + V + + +G + NY +V D EAD+ SG +S++SPI
Sbjct: 68 DQLAGARIIDESQMDTSKILVLSKVKIKNQTNGMEMNYTLVADGEADLASGKISVNSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK +GD+ ++ P G ++I+++
Sbjct: 128 KGLLGKSVGDVAEISVPSGIMKFDIIEI 155
>gi|30022455|ref|NP_834086.1| transcription elongation factor GreA [Bacillus cereus ATCC 14579]
gi|296504870|ref|YP_003666570.1| transcription elongation factor GreA [Bacillus thuringiensis
BMB171]
gi|38372300|sp|Q817Z6|GREA_BACCR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|29898013|gb|AAP11287.1| Transcription elongation factor greA [Bacillus cereus ATCC 14579]
gi|296325922|gb|ADH08850.1| transcription elongation factor GreA [Bacillus thuringiensis
BMB171]
gi|326942161|gb|AEA18057.1| transcription elongation factor GreA [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 158
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 94/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 8 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP
Sbjct: 68 LENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 128 IAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 157
>gi|229081644|ref|ZP_04214139.1| Transcription elongation factor greA [Bacillus cereus Rock4-2]
gi|228701648|gb|EEL54139.1| Transcription elongation factor greA [Bacillus cereus Rock4-2]
Length = 175
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 94/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 11 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP
Sbjct: 71 LENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 130
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 131 IAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 160
>gi|255011567|ref|ZP_05283693.1| putative transcription elongation factor [Bacteroides fragilis
3_1_12]
gi|313149395|ref|ZP_07811588.1| transcription elongation factor greA [Bacteroides fragilis 3_1_12]
gi|313138162|gb|EFR55522.1| transcription elongation factor greA [Bacteroides fragilis 3_1_12]
Length = 154
Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 97/151 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +L
Sbjct: 4 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINKL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+S+PI
Sbjct: 64 KAVIADAKIIDESKLKTDSVQILNKVELKNTKNGMKMTYTIVSESEANLKEGKISVSTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GD+ + P G+ + E++ + +
Sbjct: 124 AQGLLGKKVGDVAEIQVPQGKISLEVVNISF 154
>gi|332877001|ref|ZP_08444754.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332685109|gb|EGJ57953.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 157
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/148 (40%), Positives = 94/148 (63%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T++G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E ++A+LE
Sbjct: 8 TAEGMKKLRDELNQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLEMKIAKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
++ A +ID S + ++ +TV L + + Y +V + EAD+++G +S+SSPI
Sbjct: 68 KLVANARIIDESQLDVSKVLVLSTVKLKNLANNMQLTYTLVAESEADLKAGKISVSSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK +G+I + P G E+L++
Sbjct: 128 KGLLGKSVGEIAEIKVPNGTLKMEVLEI 155
>gi|229111852|ref|ZP_04241398.1| Transcription elongation factor greA [Bacillus cereus Rock1-15]
gi|228671608|gb|EEL26906.1| Transcription elongation factor greA [Bacillus cereus Rock1-15]
Length = 189
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 94/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 25 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP
Sbjct: 85 LENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 144
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 145 IAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 174
>gi|218233280|ref|YP_002369189.1| transcription elongation factor GreA [Bacillus cereus B4264]
gi|228923131|ref|ZP_04086422.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228941547|ref|ZP_04104096.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228960651|ref|ZP_04122296.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228974477|ref|ZP_04135044.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|229071888|ref|ZP_04205099.1| Transcription elongation factor greA [Bacillus cereus F65185]
gi|229129660|ref|ZP_04258628.1| Transcription elongation factor greA [Bacillus cereus BDRD-Cer4]
gi|229152583|ref|ZP_04280772.1| Transcription elongation factor greA [Bacillus cereus m1550]
gi|229180655|ref|ZP_04307995.1| Transcription elongation factor greA [Bacillus cereus 172560W]
gi|229192591|ref|ZP_04319552.1| Transcription elongation factor greA [Bacillus cereus ATCC 10876]
gi|218161237|gb|ACK61229.1| transcription elongation factor GreA [Bacillus cereus B4264]
gi|228590898|gb|EEK48756.1| Transcription elongation factor greA [Bacillus cereus ATCC 10876]
gi|228602800|gb|EEK60281.1| Transcription elongation factor greA [Bacillus cereus 172560W]
gi|228630844|gb|EEK87484.1| Transcription elongation factor greA [Bacillus cereus m1550]
gi|228653777|gb|EEL09647.1| Transcription elongation factor greA [Bacillus cereus BDRD-Cer4]
gi|228711184|gb|EEL63148.1| Transcription elongation factor greA [Bacillus cereus F65185]
gi|228785194|gb|EEM33206.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228799015|gb|EEM45987.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228818103|gb|EEM64179.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228836510|gb|EEM81860.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 175
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 94/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 25 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP
Sbjct: 85 LENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 144
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 145 IAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 174
>gi|229019601|ref|ZP_04176414.1| Transcription elongation factor greA [Bacillus cereus AH1273]
gi|229025839|ref|ZP_04182237.1| Transcription elongation factor greA [Bacillus cereus AH1272]
gi|229032029|ref|ZP_04188012.1| Transcription elongation factor greA [Bacillus cereus AH1271]
gi|228729274|gb|EEL80268.1| Transcription elongation factor greA [Bacillus cereus AH1271]
gi|228735450|gb|EEL86047.1| Transcription elongation factor greA [Bacillus cereus AH1272]
gi|228741681|gb|EEL91868.1| Transcription elongation factor greA [Bacillus cereus AH1273]
Length = 175
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 95/150 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 25 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I + + G TV+ E GD+++Y IVG EAD G +S SP
Sbjct: 85 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPGGDEESYTIVGSAEADPFEGRISNDSP 144
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 145 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 174
>gi|260655320|ref|ZP_05860808.1| transcription elongation factor GreA [Jonquetella anthropi E3_33
E1]
gi|260629768|gb|EEX47962.1| transcription elongation factor GreA [Jonquetella anthropi E3_33
E1]
Length = 152
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 96/149 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D + EL + EER RI K I EAR++GDLSENAEY AAK+ Q+ EG++ L
Sbjct: 1 MTRQGYDALMAELIHLRSEERYRIAKRIEEARSFGDLSENAEYAAAKDEQSKLEGKIQSL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + RAEV+D S++ G IA G V+L+++ + Y IV +EA+ + G +S +SP+
Sbjct: 61 EYQLNRAEVVDSSSLDGSLIAVGTQVTLMDQTYRKQFVYSIVNSKEANPKEGRISSASPV 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
RA++ + GD + V P G + ++L++
Sbjct: 121 GRAILNRHKGDEVIVKTPKGIRKLKVLKI 149
>gi|206969603|ref|ZP_03230557.1| transcription elongation factor GreA [Bacillus cereus AH1134]
gi|206735291|gb|EDZ52459.1| transcription elongation factor GreA [Bacillus cereus AH1134]
Length = 158
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/154 (41%), Positives = 98/154 (63%), Gaps = 8/154 (5%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 8 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 67
Query: 66 LENIITRAEVI----DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
LEN+I A +I +IST+ + G TV+ E +GD++ Y IVG EAD G +S
Sbjct: 68 LENMIRNAVIIKDTGEISTV----VTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 124 NDSPIAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 157
>gi|282858005|ref|ZP_06267206.1| transcription elongation factor GreA [Pyramidobacter piscolens
W5455]
gi|282584159|gb|EFB89526.1| transcription elongation factor GreA [Pyramidobacter piscolens
W5455]
Length = 164
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 98/153 (64%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + +T +G+DK+ EL+ + EER +I + I EAR++GDLSENAEY AAK+ Q EG+
Sbjct: 9 DTVLMTQEGYDKLSTELKQLRSEERYKIARRIEEARSFGDLSENAEYAAAKDDQAKLEGK 68
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E ++RA++ID +++ ++ G TV++++ + Y IV +E+D + GL+S
Sbjct: 69 IQVMEYQLSRAKIIDSASLDNSHVSVGTTVTIMDITHNKEFVYSIVSSEESDPEKGLISS 128
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ RAL+ K +GD + V P G + I ++
Sbjct: 129 VSPVGRALMNKRVGDEVPVKVPMGIRKLRIRKI 161
>gi|228469383|ref|ZP_04054397.1| transcription elongation factor GreA [Porphyromonas uenonis 60-3]
gi|228309067|gb|EEK17697.1| transcription elongation factor GreA [Porphyromonas uenonis 60-3]
Length = 156
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 95/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D + ++ + EERP++ + I+EAR GDLSENAEY AAKE Q E ++A L
Sbjct: 6 MTQEGYDALNNTIKQLEAEERPKVTQQIAEARDKGDLSENAEYDAAKEAQAHLEDKIAML 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + A V++ S + D + V L+ K G++K+Y IV D EA+ + +S+++PI
Sbjct: 66 KAQLGNARVLEPSQIKTDEVQILNHVRLLNKKKGEEKSYYIVSDAEANFKENKISVNTPI 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++GD+ + P G +EIL++
Sbjct: 126 AKGLLGKKVGDVAEIQVPAGTLVFEILEI 154
>gi|229163328|ref|ZP_04291280.1| Transcription elongation factor greA [Bacillus cereus R309803]
gi|228620109|gb|EEK76983.1| Transcription elongation factor greA [Bacillus cereus R309803]
Length = 186
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 95/150 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 11 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I + + G TV+ E GD+++Y IVG EAD G +S SP
Sbjct: 71 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPGGDEESYTIVGSAEADPFEGRISNDSP 130
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 131 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 160
>gi|198274274|ref|ZP_03206806.1| hypothetical protein BACPLE_00415 [Bacteroides plebeius DSM 17135]
gi|198272949|gb|EDY97218.1| hypothetical protein BACPLE_00415 [Bacteroides plebeius DSM 17135]
Length = 154
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 98/151 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ +L
Sbjct: 4 MSEEGYQKLVAELKHLESVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINQL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 64 KATIGDAKIIDTSKLKTDTVQILSRVELKNVKTGMKMAYTIVSESEANLKQGKISVNTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GD+ + P G+ + EI+ + +
Sbjct: 124 AQGLLGKKVGDVAEITIPQGKISLEIMGISF 154
>gi|171780266|ref|ZP_02921170.1| hypothetical protein STRINF_02054 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281614|gb|EDT47049.1| hypothetical protein STRINF_02054 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 160
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 85/129 (65%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY AAK+ Q EG++ +E I AE+ID ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQIQNIETKIRYAEIIDSDAVAKDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GDI+++ +P G
Sbjct: 88 AIGKTVTVQEVGTTDKDVYHIVGAAGADIFSGRISNESPIAQALIGKKTGDIVTIESPAG 147
Query: 147 EKTYEILQV 155
EI+ V
Sbjct: 148 SYDVEIISV 156
>gi|65321747|ref|ZP_00394706.1| COG0782: Transcription elongation factor [Bacillus anthracis str.
A2012]
gi|228917013|ref|ZP_04080573.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228948093|ref|ZP_04110377.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229093450|ref|ZP_04224553.1| Transcription elongation factor greA [Bacillus cereus Rock3-42]
gi|228689921|gb|EEL43725.1| Transcription elongation factor greA [Bacillus cereus Rock3-42]
gi|228811451|gb|EEM57788.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228842620|gb|EEM87708.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 161
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 95/150 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 11 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP
Sbjct: 71 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 130
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 131 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 160
>gi|317128247|ref|YP_004094529.1| transcription elongation factor GreA [Bacillus cellulosilyticus DSM
2522]
gi|315473195|gb|ADU29798.1| transcription elongation factor GreA [Bacillus cellulosilyticus DSM
2522]
Length = 157
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MVD K +T +G +K+++EL + + E R +++ I AR++GDLSEN+EY +AKE Q
Sbjct: 1 MVDEKHYMTLEGKEKLEKELEYLKTERRKEVVERIKVARSFGDLSENSEYDSAKEEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR++ +E +I A +I + + + G TVS E GD++ Y IVG EAD G
Sbjct: 61 EGRISTIEKMIRNAVMIKEDSTNTSVVTLGKTVSFKELPDGDEEEYTIVGRAEADPLEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+A++L+GK +G ++V PGG+ EIL+V
Sbjct: 121 ISNDSPMAQSLMGKSVGQKVTVATPGGDMEVEILEV 156
>gi|228902907|ref|ZP_04067048.1| Transcription elongation factor greA [Bacillus thuringiensis IBL
4222]
gi|228856691|gb|EEN01210.1| Transcription elongation factor greA [Bacillus thuringiensis IBL
4222]
Length = 161
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 94/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 11 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP
Sbjct: 71 LENMIRNAVIIKDNGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 130
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 131 IAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 160
>gi|304315887|ref|YP_003851032.1| transcription elongation factor GreA [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777389|gb|ADL67948.1| transcription elongation factor GreA [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 157
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 98/155 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T G K+++EL + + +RP + + I +ARA+GDLSEN+EY AK Q E
Sbjct: 1 MGKQVILTYDGLKKLEEELDYLKSVKRPEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+A +E ++ A+VID ++ D+++ G TV + ++ ++ Y IVG EAD + +
Sbjct: 61 GRIATIEAMLRNAQVIDEEDITIDKVSVGCTVKVYDEEFKEESEYTIVGSTEADPMNNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +ALIGK++GD +SV P G ++L++
Sbjct: 121 SDESPIGKALIGKKVGDSVSVEVPAGIIKLKVLEI 155
>gi|116491243|ref|YP_810787.1| transcription elongation factor GreA [Oenococcus oeni PSU-1]
gi|290890788|ref|ZP_06553855.1| hypothetical protein AWRIB429_1245 [Oenococcus oeni AWRIB429]
gi|122276575|sp|Q04EK0|GREA_OENOB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116091968|gb|ABJ57122.1| transcription elongation factor GreA [Oenococcus oeni PSU-1]
gi|290479560|gb|EFD88217.1| hypothetical protein AWRIB429_1245 [Oenococcus oeni AWRIB429]
Length = 162
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T++G K+Q EL +RP I I EAR++GDLSEN+EYQ+AK+ Q EGR+ +
Sbjct: 8 PMTAEGLAKLQAELDDLITNKRPAITSRIQEARSFGDLSENSEYQSAKDEQAFVEGRVKQ 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I A+VID S+ S + + G +S E GD++ Y IVG E+D SG +S SP
Sbjct: 68 LQQMIQFAQVIDASSASKNVVTLGKKISFKEVPDGDEETYTIVGSAESDPLSGKISNDSP 127
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQV 155
+ +AL+ + GD + + P T EIL V
Sbjct: 128 MGKALLDHKTGDKVEIPLPENHSVTVEILHV 158
>gi|30264449|ref|NP_846826.1| transcription elongation factor GreA [Bacillus anthracis str. Ames]
gi|47529904|ref|YP_021253.1| transcription elongation factor GreA [Bacillus anthracis str. 'Ames
Ancestor']
gi|47566566|ref|ZP_00237388.1| transcription elongation factor GreA [Bacillus cereus G9241]
gi|49187271|ref|YP_030523.1| transcription elongation factor GreA [Bacillus anthracis str.
Sterne]
gi|49481456|ref|YP_038430.1| transcription elongation factor GreA [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|52141127|ref|YP_085702.1| transcription elongation factor GreA [Bacillus cereus E33L]
gi|165872735|ref|ZP_02217363.1| transcription elongation factor GreA [Bacillus anthracis str.
A0488]
gi|167634587|ref|ZP_02392907.1| transcription elongation factor GreA [Bacillus anthracis str.
A0442]
gi|167638510|ref|ZP_02396786.1| transcription elongation factor GreA [Bacillus anthracis str.
A0193]
gi|170687498|ref|ZP_02878715.1| transcription elongation factor GreA [Bacillus anthracis str.
A0465]
gi|170707370|ref|ZP_02897824.1| transcription elongation factor GreA [Bacillus anthracis str.
A0389]
gi|177653224|ref|ZP_02935476.1| transcription elongation factor GreA [Bacillus anthracis str.
A0174]
gi|227817158|ref|YP_002817167.1| transcription elongation factor GreA [Bacillus anthracis str. CDC
684]
gi|229602899|ref|YP_002868667.1| transcription elongation factor GreA [Bacillus anthracis str.
A0248]
gi|38372311|sp|Q81LK9|GREA_BACAN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|81394760|sp|Q6HDE6|GREA_BACHK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|81686118|sp|Q634G5|GREA_BACCZ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799545|sp|C3P968|GREA_BACAA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799546|sp|C3L5Y5|GREA_BACAC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|30259107|gb|AAP28312.1| transcription elongation factor GreA [Bacillus anthracis str. Ames]
gi|47505052|gb|AAT33728.1| transcription elongation factor GreA [Bacillus anthracis str. 'Ames
Ancestor']
gi|47556596|gb|EAL14928.1| transcription elongation factor GreA [Bacillus cereus G9241]
gi|49181198|gb|AAT56574.1| transcription elongation factor GreA [Bacillus anthracis str.
Sterne]
gi|49333012|gb|AAT63658.1| transcription elongation factor [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51974596|gb|AAU16146.1| transcription elongation factor [Bacillus cereus E33L]
gi|164711511|gb|EDR17060.1| transcription elongation factor GreA [Bacillus anthracis str.
A0488]
gi|167513358|gb|EDR88728.1| transcription elongation factor GreA [Bacillus anthracis str.
A0193]
gi|167530039|gb|EDR92774.1| transcription elongation factor GreA [Bacillus anthracis str.
A0442]
gi|170127614|gb|EDS96487.1| transcription elongation factor GreA [Bacillus anthracis str.
A0389]
gi|170668693|gb|EDT19439.1| transcription elongation factor GreA [Bacillus anthracis str.
A0465]
gi|172081506|gb|EDT66578.1| transcription elongation factor GreA [Bacillus anthracis str.
A0174]
gi|227003868|gb|ACP13611.1| transcription elongation factor GreA [Bacillus anthracis str. CDC
684]
gi|229267307|gb|ACQ48944.1| transcription elongation factor GreA [Bacillus anthracis str.
A0248]
Length = 158
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 95/150 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 8 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP
Sbjct: 68 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 128 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 157
>gi|153806042|ref|ZP_01958710.1| hypothetical protein BACCAC_00293 [Bacteroides caccae ATCC 43185]
gi|149130719|gb|EDM21925.1| hypothetical protein BACCAC_00293 [Bacteroides caccae ATCC 43185]
Length = 176
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 95/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q L E R+ +L
Sbjct: 26 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGLLEMRINKL 85
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 86 KTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 145
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++GD+ + P G+ E++ +
Sbjct: 146 AQGLLGKKIGDVAEITVPQGKIALEVVNI 174
>gi|218899548|ref|YP_002447959.1| transcription elongation factor GreA [Bacillus cereus G9842]
gi|228967454|ref|ZP_04128483.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar sotto str. T04001]
gi|229048087|ref|ZP_04193660.1| Transcription elongation factor greA [Bacillus cereus AH676]
gi|229146950|ref|ZP_04275314.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST24]
gi|218545656|gb|ACK98050.1| transcription elongation factor GreA [Bacillus cereus G9842]
gi|228636549|gb|EEK93015.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST24]
gi|228723242|gb|EEL74614.1| Transcription elongation factor greA [Bacillus cereus AH676]
gi|228792231|gb|EEM39804.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 175
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 94/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 25 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP
Sbjct: 85 LENMIRNAVIIKDNGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 144
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 145 IAKSLLGKQIGEKVTIQTPGGEMQVEIVSV 174
>gi|118479541|ref|YP_896692.1| transcription elongation factor GreA [Bacillus thuringiensis str.
Al Hakam]
gi|190566829|ref|ZP_03019745.1| transcription elongation factor GreA [Bacillus anthracis
Tsiankovskii-I]
gi|196034522|ref|ZP_03101931.1| transcription elongation factor GreA [Bacillus cereus W]
gi|196039303|ref|ZP_03106609.1| transcription elongation factor GreA [Bacillus cereus NVH0597-99]
gi|196044918|ref|ZP_03112152.1| transcription elongation factor GreA [Bacillus cereus 03BB108]
gi|218905574|ref|YP_002453408.1| transcription elongation factor GreA [Bacillus cereus AH820]
gi|225866361|ref|YP_002751739.1| transcription elongation factor GreA [Bacillus cereus 03BB102]
gi|228929424|ref|ZP_04092445.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935700|ref|ZP_04098513.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228987631|ref|ZP_04147745.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229123920|ref|ZP_04253112.1| Transcription elongation factor greA [Bacillus cereus 95/8201]
gi|229157995|ref|ZP_04286066.1| Transcription elongation factor greA [Bacillus cereus ATCC 4342]
gi|229186619|ref|ZP_04313780.1| Transcription elongation factor greA [Bacillus cereus BGSC 6E1]
gi|254684135|ref|ZP_05147995.1| transcription elongation factor GreA [Bacillus anthracis str.
CNEVA-9066]
gi|254721967|ref|ZP_05183756.1| transcription elongation factor GreA [Bacillus anthracis str.
A1055]
gi|254736482|ref|ZP_05194188.1| transcription elongation factor GreA [Bacillus anthracis str.
Western North America USA6153]
gi|254741520|ref|ZP_05199207.1| transcription elongation factor GreA [Bacillus anthracis str.
Kruger B]
gi|254750958|ref|ZP_05202997.1| transcription elongation factor GreA [Bacillus anthracis str.
Vollum]
gi|254757713|ref|ZP_05209740.1| transcription elongation factor GreA [Bacillus anthracis str.
Australia 94]
gi|300119200|ref|ZP_07056897.1| transcription elongation factor GreA [Bacillus cereus SJ1]
gi|301055888|ref|YP_003794099.1| transcription elongation factor [Bacillus anthracis CI]
gi|118418766|gb|ABK87185.1| transcription elongation factor GreA [Bacillus thuringiensis str.
Al Hakam]
gi|190561820|gb|EDV15789.1| transcription elongation factor GreA [Bacillus anthracis
Tsiankovskii-I]
gi|195993064|gb|EDX57023.1| transcription elongation factor GreA [Bacillus cereus W]
gi|196024406|gb|EDX63079.1| transcription elongation factor GreA [Bacillus cereus 03BB108]
gi|196029930|gb|EDX68531.1| transcription elongation factor GreA [Bacillus cereus NVH0597-99]
gi|218538607|gb|ACK91005.1| transcription elongation factor GreA [Bacillus cereus AH820]
gi|225789601|gb|ACO29818.1| transcription elongation factor GreA [Bacillus cereus 03BB102]
gi|228596878|gb|EEK54537.1| Transcription elongation factor greA [Bacillus cereus BGSC 6E1]
gi|228625448|gb|EEK82204.1| Transcription elongation factor greA [Bacillus cereus ATCC 4342]
gi|228659222|gb|EEL14870.1| Transcription elongation factor greA [Bacillus cereus 95/8201]
gi|228772091|gb|EEM20543.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228823938|gb|EEM69757.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830212|gb|EEM75828.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|298723420|gb|EFI64165.1| transcription elongation factor GreA [Bacillus cereus SJ1]
gi|300378057|gb|ADK06961.1| transcription elongation factor [Bacillus cereus biovar anthracis
str. CI]
Length = 175
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 95/150 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 25 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S SP
Sbjct: 85 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 144
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 145 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 174
>gi|138896117|ref|YP_001126570.1| transcription elongation factor GreA [Geobacillus
thermodenitrificans NG80-2]
gi|196249010|ref|ZP_03147710.1| transcription elongation factor GreA [Geobacillus sp. G11MC16]
gi|166200664|sp|A4IR71|GREA_GEOTN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|134267630|gb|ABO67825.1| Transcription elongation factor [Geobacillus thermodenitrificans
NG80-2]
gi|196211886|gb|EDY06645.1| transcription elongation factor GreA [Geobacillus sp. G11MC16]
Length = 158
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 95/150 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q E R+
Sbjct: 8 PMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVESRIQM 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE +I A +I+ + D ++ G +V+ +E G+++ Y IVG EAD G +S SP
Sbjct: 68 LETMIRNAVIIEEDKENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISNDSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++LIG +GD ++V PGGE +I+ V
Sbjct: 128 IAKSLIGHRVGDEVTVQTPGGEMLVKIVAV 157
>gi|333029629|ref|ZP_08457690.1| transcription elongation factor GreA [Bacteroides coprosuis DSM
18011]
gi|332740226|gb|EGJ70708.1| transcription elongation factor GreA [Bacteroides coprosuis DSM
18011]
Length = 154
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 94/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ G++ + +ELR + +RP I + I+EAR GDLSENAEY AAKE Q + E ++ L
Sbjct: 4 MSESGYNDLMEELRELETVQRPEISRQIAEARDKGDLSENAEYDAAKEAQGMLEMKINRL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ II A +ID S +S D + TV L +G K Y IV + EAD++ G +++S+PI
Sbjct: 64 KLIIADARIIDESKLSTDSVQILNTVELKNVKNGKKMKYTIVSESEADLRKGKIAVSTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++GD+ + P G T E++ +
Sbjct: 124 AQGLLGKKVGDVAEIKVPQGMITLEVVDI 152
>gi|239905833|ref|YP_002952572.1| transcription elongation factor GreA [Desulfovibrio magneticus
RS-1]
gi|259647640|sp|C4XLU8|GREA_DESMR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|239795697|dbj|BAH74686.1| transcription elongation factor GreA [Desulfovibrio magneticus
RS-1]
Length = 164
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/156 (41%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ IP++ +GF + + R ++ERP +I AI EAR GDL ENA Y+AA+E Q + E
Sbjct: 1 MESIPISVEGFRR-LERELERLKKERPGVILAIKEAREEGDLRENAGYEAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +E+ ++R VID++T+ G+++ FGATV + + ++GD K Y ++G EA+ G +S
Sbjct: 60 RINYIESRMSRFNVIDLATLGGEQVIFGATVEIEDVDTGDVKKYTLLGPDEAEPSKGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+ AL+GK +GD I V+AP G+ YEI+ + +
Sbjct: 120 LLSPVGLALLGKFVGDEIVVDAPRGKINYEIVSIAF 155
>gi|118586750|ref|ZP_01544187.1| transcriptional elongation factor [Oenococcus oeni ATCC BAA-1163]
gi|118432838|gb|EAV39567.1| transcriptional elongation factor [Oenococcus oeni ATCC BAA-1163]
Length = 169
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T++G K+Q EL +RP I I EAR++GDLSEN+EYQ+AK+ Q EGR+ +
Sbjct: 15 PMTAEGLAKLQAELDDLITNKRPAITSRIQEARSFGDLSENSEYQSAKDEQAFVEGRVKQ 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I A+VID S+ S + + G +S E GD++ Y IVG E+D SG +S SP
Sbjct: 75 LQQMIQFAQVIDASSASKNVVTLGKKISFKEVPDGDEETYTIVGSAESDPLSGKISNDSP 134
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQV 155
+ +AL+ + GD + + P T EIL V
Sbjct: 135 MGKALLDHKTGDKVEIPLPENHSVTVEILHV 165
>gi|91216953|ref|ZP_01253916.1| transcription elongation factor greA [Psychroflexus torquis ATCC
700755]
gi|91184824|gb|EAS71204.1| transcription elongation factor greA [Psychroflexus torquis ATCC
700755]
Length = 158
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 90/148 (60%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G K++ E + ERP+ + I++AR GDLSENAEY AAKE Q + E R+A+LE
Sbjct: 8 TEEGLKKLRAEFEQLRDVERPKASQDIADARDKGDLSENAEYDAAKEAQGMLEMRLAKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
++ A VID S + ++ + V L + Y++V EAD+++G +S+ SPI
Sbjct: 68 QVVANARVIDESQLDTSKVLIHSKVRLKNVKMNQEMTYKLVAQSEADLKAGKISVDSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GKE GD + P G+ T+EIL+V
Sbjct: 128 KGLLGKEAGDTAEIEVPSGKITFEILEV 155
>gi|326803433|ref|YP_004321251.1| transcription elongation factor GreA [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651692|gb|AEA01875.1| transcription elongation factor GreA [Aerococcus urinae
ACS-120-V-Col10a]
Length = 159
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 96/151 (63%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G ++++ EL + +RP +I I AR++GDLSEN+EY++AK Q++ E ++A
Sbjct: 6 FPMTVEGKERLEAELEDLKLNKRPEVISRIKVARSFGDLSENSEYESAKNEQSILESQIA 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
++EN+I AE++D + D ++ G V E G+++ Y+IVG EAD G +S S
Sbjct: 66 KIENMIRYAEIVDPDALGKDTVSIGKRVKFQELPDGEEEEYEIVGKAEADPLGGKISNES 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA ALIGK++GD + + PG + IL V
Sbjct: 126 PIANALIGKKVGDEVEIETPGEAFSVRILAV 156
>gi|331701536|ref|YP_004398495.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL
B-30929]
gi|329128879|gb|AEB73432.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL
B-30929]
Length = 157
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 95/153 (62%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D P+T+ G DK++ EL + +RP++++ I AR+YGDLSEN+EY++AK+ Q++ E R
Sbjct: 4 DTYPMTADGRDKLKAELEDLKVNQRPKVVERIKIARSYGDLSENSEYESAKDEQSMLESR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E+++ A++ID + D + G V+ E D + YQIVG EAD SG +S
Sbjct: 64 ITTIEHMLQYAQIIDSNDSDKDEVTVGKKVTFQELPDEDPETYQIVGAAEADPMSGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPIA+ LIG L + +++ P G +I +V
Sbjct: 124 DSPIAKGLIGHRLNEEVNIPIPAGTMKVKITKV 156
>gi|289579209|ref|YP_003477836.1| GreA/GreB family elongation factor [Thermoanaerobacter italicus
Ab9]
gi|297545389|ref|YP_003677691.1| GreA/GreB family elongation factor [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289528922|gb|ADD03274.1| GreA/GreB family elongation factor [Thermoanaerobacter italicus
Ab9]
gi|296843164|gb|ADH61680.1| GreA/GreB family elongation factor [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 157
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 98/155 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G K+++EL + + +R + + I +ARA+GDLSEN+EY AK Q E
Sbjct: 1 MSKPVILTYEGLKKLEEELEYLKTVKRAEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+A LE ++ A+VID + D+++ G TV + +++ ++ Y IVG EAD + +
Sbjct: 61 GRIATLEAMLKNAKVIDEEDIKLDQVSIGCTVKVYDESYNEEVEYTIVGSAEADPMNNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +AL+GK++GD++SV P G +IL++
Sbjct: 121 SDESPIGKALLGKKVGDVVSVEVPAGIINLKILEI 155
>gi|42783507|ref|NP_980754.1| transcription elongation factor GreA [Bacillus cereus ATCC 10987]
gi|206975946|ref|ZP_03236856.1| transcription elongation factor GreA [Bacillus cereus H3081.97]
gi|217961869|ref|YP_002340439.1| transcription elongation factor GreA [Bacillus cereus AH187]
gi|222097822|ref|YP_002531879.1| transcription elongation factor grea [Bacillus cereus Q1]
gi|81409080|sp|Q730F5|GREA_BACC1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|226737009|sp|B7HQD7|GREA_BACC7 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799547|sp|B9IYE4|GREA_BACCQ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|42739436|gb|AAS43362.1| transcription elongation factor GreA [Bacillus cereus ATCC 10987]
gi|206745698|gb|EDZ57095.1| transcription elongation factor GreA [Bacillus cereus H3081.97]
gi|217066147|gb|ACJ80397.1| transcription elongation factor GreA [Bacillus cereus AH187]
gi|221241880|gb|ACM14590.1| transcription elongation factor GreA [Bacillus cereus Q1]
Length = 158
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 94/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 8 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I + + G TV+ E GD++ Y IVG EAD G +S SP
Sbjct: 68 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 128 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 157
>gi|327402704|ref|YP_004343542.1| transcription elongation factor GreA [Fluviicola taffensis DSM
16823]
gi|327318212|gb|AEA42704.1| transcription elongation factor GreA [Fluviicola taffensis DSM
16823]
Length = 157
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 96/155 (61%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D T +G K++ EL + +RPRI + I+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MSDFAYYTEEGLKKLKDELHEMKTVQRPRISEQIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++++++ ++++A +ID S M ++ + V + N+G + Y IV + EAD++ +
Sbjct: 61 MKISKMDALLSKARIIDNSIMDNSKVLILSCVKIKNVNNGMEMEYTIVAESEADLKLKKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SI SPI + L+GK++GD+ V P G +E++ +
Sbjct: 121 SIDSPIGKGLLGKKVGDVADVQTPNGIVKFEVMDI 155
>gi|295396925|ref|ZP_06807049.1| transcription elongation factor GreA [Aerococcus viridans ATCC
11563]
gi|294974859|gb|EFG50562.1| transcription elongation factor GreA [Aerococcus viridans ATCC
11563]
Length = 159
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 97/150 (64%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G +KIQQ+L + +R I++ I AR+YGDLSEN+EY+AAK+ Q EG++ +
Sbjct: 7 PMTQEGLEKIQQDLDELKIVKRKEIVERIKIARSYGDLSENSEYEAAKDEQAFVEGQIQK 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE ++ A++ID + + ++ G V+ +E GD++ Y IVG EAD G +S SP
Sbjct: 67 LEKMVRYAKIIDPNEIDEGIVSLGRKVTFIELPDGDEEVYSIVGRAEADPLDGKISNESP 126
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA+ALIGK + D +++ PGG+ +I V
Sbjct: 127 IAQALIGKGVNDEVTIETPGGDMVVKITSV 156
>gi|229098851|ref|ZP_04229787.1| Transcription elongation factor greA [Bacillus cereus Rock3-29]
gi|229105013|ref|ZP_04235667.1| Transcription elongation factor greA [Bacillus cereus Rock3-28]
gi|229117876|ref|ZP_04247238.1| Transcription elongation factor greA [Bacillus cereus Rock1-3]
gi|228665533|gb|EEL21013.1| Transcription elongation factor greA [Bacillus cereus Rock1-3]
gi|228678390|gb|EEL32613.1| Transcription elongation factor greA [Bacillus cereus Rock3-28]
gi|228684524|gb|EEL38466.1| Transcription elongation factor greA [Bacillus cereus Rock3-29]
Length = 182
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 95/150 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 32 PMTQEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 91
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I+ + + G TV+ E +GD++ Y IVG EAD G +S SP
Sbjct: 92 LENMIRNAVIIEDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDSP 151
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 152 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 181
>gi|229141116|ref|ZP_04269658.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST26]
gi|229198506|ref|ZP_04325210.1| Transcription elongation factor greA [Bacillus cereus m1293]
gi|228585009|gb|EEK43123.1| Transcription elongation factor greA [Bacillus cereus m1293]
gi|228642394|gb|EEK98683.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST26]
gi|324328283|gb|ADY23543.1| transcription elongation factor GreA [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 175
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 94/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 25 PMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I + + G TV+ E GD++ Y IVG EAD G +S SP
Sbjct: 85 LENMIRNAVIITDNGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDSP 144
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 145 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 174
>gi|167036744|ref|YP_001664322.1| transcription elongation factor GreA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167039463|ref|YP_001662448.1| transcription elongation factor GreA [Thermoanaerobacter sp. X514]
gi|256751867|ref|ZP_05492739.1| transcription elongation factor GreA [Thermoanaerobacter
ethanolicus CCSD1]
gi|300915431|ref|ZP_07132744.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X561]
gi|307266258|ref|ZP_07547799.1| GreA/GreB family elongation factor [Thermoanaerobacter wiegelii
Rt8.B1]
gi|307725211|ref|YP_003904962.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X513]
gi|320115167|ref|YP_004185326.1| transcription elongation factor GreA [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|326391992|ref|ZP_08213492.1| transcription elongation factor GreA [Thermoanaerobacter
ethanolicus JW 200]
gi|238687609|sp|B0K5B9|GREA_THEPX RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238687705|sp|B0KCE3|GREA_THEP3 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166853703|gb|ABY92112.1| transcription elongation factor GreA [Thermoanaerobacter sp. X514]
gi|166855578|gb|ABY93986.1| transcription elongation factor GreA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256749274|gb|EEU62306.1| transcription elongation factor GreA [Thermoanaerobacter
ethanolicus CCSD1]
gi|300888491|gb|EFK83640.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X561]
gi|306918708|gb|EFN48941.1| GreA/GreB family elongation factor [Thermoanaerobacter wiegelii
Rt8.B1]
gi|307582272|gb|ADN55671.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X513]
gi|319928258|gb|ADV78943.1| transcription elongation factor GreA [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|325991960|gb|EGD50452.1| transcription elongation factor GreA [Thermoanaerobacter
ethanolicus JW 200]
Length = 157
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 98/155 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G K+++EL + + +R + + I +ARA+GDLSEN+EY AK Q E
Sbjct: 1 MSKPVILTYEGLKKLEEELEYLKTVKRAEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+A LE ++ A+VID + D+++ G TV + +++ ++ Y IVG EAD + +
Sbjct: 61 GRIATLEAMLKNAKVIDEEDIKLDQVSIGCTVKVYDESYNEEVEYTIVGSAEADPMNNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +AL+GK++GD++SV P G +IL++
Sbjct: 121 SDESPIGKALLGKKVGDVVSVEVPAGIIKLKILEI 155
>gi|149370905|ref|ZP_01890500.1| transcription elongation factor [unidentified eubacterium SCB49]
gi|149355691|gb|EDM44249.1| transcription elongation factor [unidentified eubacterium SCB49]
Length = 158
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 91/148 (61%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G +++EL + ERP AI+EAR GDLSENAEY AAKE Q + E R+++LE
Sbjct: 8 TLEGLKSLKEELNQLKDVERPAASNAIAEARDKGDLSENAEYDAAKEAQGMLEMRISKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I+ A VID S + ++ +TV + +G Y++V E+D+++G +S+ SPI
Sbjct: 68 AIVANARVIDESQLDTSKVLIHSTVKIKNATNGATMTYKLVAQSESDLKTGKISVDSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK +GD ++ P G +EI+++
Sbjct: 128 KGLLGKTVGDTAAIQVPSGTMNFEIVEI 155
>gi|194017086|ref|ZP_03055698.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M) [Bacillus
pumilus ATCC 7061]
gi|194010954|gb|EDW20524.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M) [Bacillus
pumilus ATCC 7061]
Length = 157
Score = 114 bits (286), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 100/151 (66%), Gaps = 1/151 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K+++EL + +R +++ I AR++GDLSEN+EY +AKE Q EGR+
Sbjct: 7 FPMTEEGKRKLEEELEHLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L+N+I A++I+ S + ++ G TV+ VE G++++Y IVG EAD G +S S
Sbjct: 67 TLDNMIRNAKIIEDEGNS-NIVSLGKTVTFVELPDGEEESYTIVGSAEADPFEGKISNDS 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA++L+GK++ D ++V PGGE +I+++
Sbjct: 126 PIAKSLLGKQVDDKVTVQTPGGEMFVQIVKI 156
>gi|78188473|ref|YP_378811.1| transcription elongation factor GreA [Chlorobium chlorochromatii
CaD3]
gi|123770883|sp|Q3ATA7|GREA_CHLCH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|78170672|gb|ABB27768.1| GreA/GreB family elongation factor [Chlorobium chlorochromatii
CaD3]
Length = 160
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +T+ G++++++EL + R +++ I+EARA+GDLSENAEY AA+E Q+ E
Sbjct: 1 MNDRIYLTNDGYNRLKEELYVLVHQTRKEVLEKIAEARAHGDLSENAEYDAAREEQSQIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119
R+ +LE+ ++ A ++D + D++ +V L ++ D+ Y +V +EAD +G
Sbjct: 61 ARIGDLESKLSAATILDPKQIKTDKVYILTSVKLRNLDNPDEIIEYTLVSSEEADTDAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S+ SP+ R+LIGK +G +++ P GE YEIL++
Sbjct: 121 ISVRSPVGRSLIGKTVGAKVTIVVPKGELHYEILEIF 157
>gi|259503587|ref|ZP_05746489.1| transcription elongation factor GreA [Lactobacillus antri DSM
16041]
gi|259168460|gb|EEW52955.1| transcription elongation factor GreA [Lactobacillus antri DSM
16041]
Length = 158
Score = 114 bits (286), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 96/151 (63%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + + RP +IK I AR+YGDLSEN+EY++AK+ Q + E R+A
Sbjct: 7 FPMTLEGKQKLEDELEEYKMKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAMVESRIA 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
++EN++ AE+ID + D ++ G +V+ E + + Y IVG+ E+D +G +S S
Sbjct: 67 QIENMLQYAEIIDNEDVDKDEVSMGRSVTFKELPDEEPETYSIVGESESDPLNGKISNES 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+A+ L+G ++G+ + + P G +IL V
Sbjct: 127 PMAKGLLGHKIGEEVEIEIPNGTMKVKILDV 157
>gi|229088223|ref|ZP_04220162.1| Transcription elongation factor greA [Bacillus cereus Rock3-44]
gi|228695096|gb|EEL48133.1| Transcription elongation factor greA [Bacillus cereus Rock3-44]
Length = 161
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 94/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 11 PMTLEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I+ + + G TV+ E GD++ Y IVG EAD G +S SP
Sbjct: 71 LENMIRNAVIIEDTGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDSP 130
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 131 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 160
>gi|325955129|ref|YP_004238789.1| transcription elongation factor GreA [Weeksella virosa DSM 16922]
gi|323437747|gb|ADX68211.1| transcription elongation factor GreA [Weeksella virosa DSM 16922]
Length = 159
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 98/150 (65%), Gaps = 1/150 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +K++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q + E R+++L
Sbjct: 7 VTKEGLEKLRAELHELETYERPKISQQIAEARDKGDLSENAEYDAAKEAQGMLEMRISKL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A +ID S + +I+ +TV + + S + +Y +V + EAD++ +S+++PI
Sbjct: 67 QESIANARLIDESKLDATKISILSTVRIRNQVSKQELSYTLVPETEADLKKARISVNTPI 126
Query: 127 ARALIGKELGDIISVNAPGGEK-TYEILQV 155
A+ L+GK +GDI + P G+ T+E+L +
Sbjct: 127 AKGLLGKSVGDIAEIELPNGQTLTFEVLSI 156
>gi|53715604|ref|YP_101596.1| transcription elongation factor GreA [Bacteroides fragilis YCH46]
gi|60683548|ref|YP_213692.1| putative transcription elongation factor [Bacteroides fragilis NCTC
9343]
gi|253566584|ref|ZP_04844037.1| transcription elongation factor GreA [Bacteroides sp. 3_2_5]
gi|265767453|ref|ZP_06095119.1| transcription elongation factor GreB [Bacteroides sp. 2_1_16]
gi|52218469|dbj|BAD51062.1| transcription elongation factor GreA [Bacteroides fragilis YCH46]
gi|60494982|emb|CAH09800.1| putative transcription elongation factor [Bacteroides fragilis NCTC
9343]
gi|251944756|gb|EES85231.1| transcription elongation factor GreA [Bacteroides sp. 3_2_5]
gi|263252758|gb|EEZ24270.1| transcription elongation factor GreB [Bacteroides sp. 2_1_16]
gi|301165062|emb|CBW24630.1| putative transcription elongation factor [Bacteroides fragilis
638R]
Length = 154
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 97/151 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ +L
Sbjct: 4 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINKL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+S+PI
Sbjct: 64 KAVIADAKIIDESKLKTDSVQILNKVELKNTKNGMKMTYTIVSESEANLKEGKISVSTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GD+ + P G+ + E++ + +
Sbjct: 124 AQGLLGKKVGDVAEIQVPQGKISLEVVNISF 154
>gi|154490393|ref|ZP_02030654.1| hypothetical protein PARMER_00626 [Parabacteroides merdae ATCC
43184]
gi|154089004|gb|EDN88048.1| hypothetical protein PARMER_00626 [Parabacteroides merdae ATCC
43184]
Length = 156
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 94/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+DKI E+ + + +RP I I+EAR GDLSENAEY AAKE Q + E ++++L
Sbjct: 6 MTKDGYDKILAEINYLETVKRPEISAQIAEARDKGDLSENAEYDAAKEAQGIMEAKLSQL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I+ A +ID + + D + V + + Y +V D EA+++ G +++S+PI
Sbjct: 66 KGLISNARLIDETRVQTDEVQILNKVKIKNTKNNAVMTYTLVSDSEANLKEGKIAVSTPI 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++GDI+ + P G ++EI+ +
Sbjct: 126 AQGLMGKKVGDIVEIKVPSGMMSFEIMDI 154
>gi|253572564|ref|ZP_04849966.1| transcription elongation factor greA [Bacteroides sp. 1_1_6]
gi|298387790|ref|ZP_06997340.1| transcription elongation factor GreA [Bacteroides sp. 1_1_14]
gi|251837979|gb|EES66068.1| transcription elongation factor greA [Bacteroides sp. 1_1_6]
gi|298259395|gb|EFI02269.1| transcription elongation factor GreA [Bacteroides sp. 1_1_14]
Length = 173
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 95/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +L
Sbjct: 23 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINKL 82
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 83 KTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 142
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++GDI + P G+ E++ +
Sbjct: 143 AQGLLGKKVGDIAEITVPQGKIALEVVNI 171
>gi|29347975|ref|NP_811478.1| transcription elongation factor greA [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339877|gb|AAO77672.1| transcription elongation factor greA [Bacteroides thetaiotaomicron
VPI-5482]
Length = 154
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 95/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +L
Sbjct: 4 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINKL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 64 KTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++GDI + P G+ E++ +
Sbjct: 124 AQGLLGKKVGDIAEITVPQGKIALEVVNI 152
>gi|170016629|ref|YP_001727548.1| transcription elongation factor [Leuconostoc citreum KM20]
gi|238688945|sp|B1MX52|GREA_LEUCK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|169803486|gb|ACA82104.1| Transcription elongation factor [Leuconostoc citreum KM20]
Length = 160
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 94/152 (61%), Gaps = 1/152 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T++G DK+Q EL +RP I I AR+YGDLSEN+EYQ+AK+ Q EGR+
Sbjct: 7 FPMTAEGRDKLQAELEDLITRQRPEITNRIQIARSYGDLSENSEYQSAKDEQAFVEGRIL 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L+ +I AE+ID + + D ++ G TV+ E + + Y IVG E+D +G +S S
Sbjct: 67 TLKKMIENAEIIDPNATAADVVSLGKTVTFKELPDEEPETYAIVGSTESDPLAGKISNES 126
Query: 125 PIARALIGKELGDIISVNAPGGEKT-YEILQV 155
+A AL+ K++GD +SV P GE EIL+V
Sbjct: 127 AMAVALLDKKVGDKVSVPLPSGESIDVEILKV 158
>gi|120437373|ref|YP_863059.1| transcription elongation factor GreA [Gramella forsetii KT0803]
gi|166200665|sp|A0M5U7|GREA_GRAFK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|117579523|emb|CAL67992.1| transcription elongation factor GreA [Gramella forsetii KT0803]
Length = 158
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 94/150 (62%), Gaps = 1/150 (0%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G K++ EL + ERP+ +AI EAR GDLSENAEY AAKE Q L E +++++E
Sbjct: 8 TPEGLKKLRDELNHLKDVERPKASEAIGEARDKGDLSENAEYDAAKEAQGLLEMKISKME 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
++ A VID S + ++ + V + + +G + Y++V EAD++SG +S+ SPI
Sbjct: 68 EVVANARVIDESQLDTSKVLVHSHVKIKNQTNGAEMTYKLVAQSEADLKSGKISVDSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ L+GK++GD + P G ++++++ W
Sbjct: 128 KGLLGKKVGDTAEIEVPNGTVKFDVIEI-W 156
>gi|323141548|ref|ZP_08076433.1| transcription elongation factor GreA [Phascolarctobacterium sp. YIT
12067]
gi|322413960|gb|EFY04794.1| transcription elongation factor GreA [Phascolarctobacterium sp. YIT
12067]
Length = 158
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 97/150 (64%), Gaps = 1/150 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K+++EL R+ E R I++ + EARA GDLSEN+EY AKE Q NEGR+ EL
Sbjct: 8 LTAEGLRKLKEELAQRKGEIREEIVERLKEARAQGDLSENSEYDQAKEDQGKNEGRILEL 67
Query: 67 ENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E +I A +ID S + + ++ G+TV L + +GD++ Y IVG EAD +S SP
Sbjct: 68 EQMIKTATIIDDSASKAAGIVSLGSTVLLKDVETGDEETYTIVGTTEADPFENRISNESP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ A++G ++ D++ P GE +YEI+++
Sbjct: 128 VGAAILGCKVHDVVVTKTPVGELSYEIVEI 157
>gi|212550757|ref|YP_002309074.1| transcription elongation factor GreA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548995|dbj|BAG83663.1| transcription elongation factor GreA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 156
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 96/149 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+DK+ +E+ + + EERP IIK I+EAR GDLSEN EY AA+E Q++ E ++ +L
Sbjct: 6 MTKGGYDKLLEEIVYLESEERPSIIKQIAEAREKGDLSENVEYNAAREAQSILELKITQL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++++ +ID S + + I V+L +G Y +V + E D+++G +SI++PI
Sbjct: 66 KSLVANTRLIDESHIQTNSIQILNKVTLRNIKNGQTTVYTLVSEAETDLKAGKISINTPI 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
++ LIGK++G+I + P G +EIL +
Sbjct: 126 SKGLIGKKVGEIAEIKTPSGIIYFEILSI 154
>gi|320547393|ref|ZP_08041681.1| transcription elongation factor GreA [Streptococcus equinus ATCC
9812]
gi|320447938|gb|EFW88693.1| transcription elongation factor GreA [Streptococcus equinus ATCC
9812]
Length = 178
Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 86/129 (66%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY AAK+ Q EG++ +E I AE+ID ++ D +
Sbjct: 46 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQIQIIETKIRYAEIIDSDAVAKDEV 105
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E ++ DK Y IVG AD+ +G +S SPIA+ALIGK+ GDI+++ +P G
Sbjct: 106 AIGKTVTVQEVSTTDKDVYHIVGAAGADIFAGRISNESPIAQALIGKKTGDIVTIESPAG 165
Query: 147 EKTYEILQV 155
EI+ V
Sbjct: 166 NYDVEIISV 174
>gi|296125308|ref|YP_003632560.1| transcription elongation factor GreA [Brachyspira murdochii DSM
12563]
gi|296017124|gb|ADG70361.1| transcription elongation factor GreA [Brachyspira murdochii DSM
12563]
Length = 154
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 96/152 (63%), Gaps = 5/152 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQE--ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
P+T +G+DK++ +L + E P II +EAR GDL ENAEY AAKE Q L ++
Sbjct: 4 PITKEGYDKVKAKLAELKAEFETLPAII---AEAREKGDLKENAEYHAAKEKQGLLNAQI 60
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++LE + E+ID S++ + + FG V + +KN Y+IVG+ EAD+ ++I
Sbjct: 61 SKLEGDLAGCEIIDPSSLDKNTVTFGKRVKVKDKNRNAVFEYRIVGELEADMSKNEITIV 120
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+PIA+ L+ K++GD++++ P G+K EIL++
Sbjct: 121 TPIAKGLLAKKVGDVVTIKVPAGDKVLEILEI 152
>gi|332686024|ref|YP_004455798.1| transcription elongation factor GreA [Melissococcus plutonius ATCC
35311]
gi|332370033|dbj|BAK20989.1| transcription elongation factor GreA [Melissococcus plutonius ATCC
35311]
Length = 157
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/156 (43%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K++QEL + +R I++ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVFPMTQEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LEN+I A++ID + D I+ G TV E G+++ Y IVG EAD SG
Sbjct: 61 EGRITTLENMIRFAQIIDNDGVDEDEISIGKTVVFTELPDGEEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+ALIGK LG+ + + PGG+ ++++V
Sbjct: 121 ISNDSPIAQALIGKHLGEEVIIETPGGDMKVKVIRV 156
>gi|154686872|ref|YP_001422033.1| transcription elongation factor GreA [Bacillus amyloliquefaciens
FZB42]
gi|308174431|ref|YP_003921136.1| transcription elongation factor [Bacillus amyloliquefaciens DSM 7]
gi|166200649|sp|A7Z726|GREA_BACA2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|154352723|gb|ABS74802.1| GreA [Bacillus amyloliquefaciens FZB42]
gi|307607295|emb|CBI43666.1| transcription elongation factor [Bacillus amyloliquefaciens DSM 7]
Length = 157
Score = 114 bits (284), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++QEL + +R +++ I AR++GDLSEN+EY +AKE Q EGR+
Sbjct: 7 FPMTHEGKQKLEQELEQLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LEN+I A++I+ S + + G TVS +E G++++Y IVG EAD G +S S
Sbjct: 67 TLENMIRNAKIIEDDGGS-NVVGLGKTVSFIELPDGEEESYTIVGSAEADPFEGKISNDS 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA++L+G+++ + ++V PGGE +I+++
Sbjct: 126 PIAKSLLGRKVDEEVTVQTPGGEMLVKIVKI 156
>gi|228993117|ref|ZP_04153039.1| Transcription elongation factor greA [Bacillus pseudomycoides DSM
12442]
gi|229006713|ref|ZP_04164347.1| Transcription elongation factor greA [Bacillus mycoides Rock1-4]
gi|228754574|gb|EEM03985.1| Transcription elongation factor greA [Bacillus mycoides Rock1-4]
gi|228766576|gb|EEM15217.1| Transcription elongation factor greA [Bacillus pseudomycoides DSM
12442]
Length = 161
Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 93/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 11 PMTQEGKQKLENEIEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I+ + + G TV E GD++ Y IVG EAD G +S SP
Sbjct: 71 LENMIRNAVIIEDNGEESTVVTLGKTVVFKELPDGDEEAYTIVGSAEADPFEGRISNDSP 130
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 131 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 160
>gi|228999165|ref|ZP_04158747.1| Transcription elongation factor greA [Bacillus mycoides Rock3-17]
gi|228760782|gb|EEM09746.1| Transcription elongation factor greA [Bacillus mycoides Rock3-17]
Length = 158
Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 93/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 8 PMTQEGKQKLENEIEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I+ + + G TV E GD++ Y IVG EAD G +S SP
Sbjct: 68 LENMIRNAVIIEDNGEESTVVTLGKTVVFKELPDGDEEAYTIVGSAEADPFEGRISNDSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 128 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 157
>gi|255038560|ref|YP_003089181.1| transcription elongation factor GreA [Dyadobacter fermentans DSM
18053]
gi|254951316|gb|ACT96016.1| transcription elongation factor GreA [Dyadobacter fermentans DSM
18053]
Length = 160
Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 97/148 (65%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G +K++ EL + + R I + I+EAR GDLSENAEY AAK+ Q ++E ++A+LE
Sbjct: 8 TEEGLNKLRNELNEMKTKGRTEIARQIAEARDKGDLSENAEYDAAKDAQGMHEMKIAKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I++ A VID S+M +++ + V + + +G + Y +V ++EAD+++G +S+ SPI
Sbjct: 68 EILSNARVIDESSMDTSQVSVLSKVKIKNRKNGMEVTYTLVSEEEADLKAGKISVGSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK++G+ + P G +E+L +
Sbjct: 128 KGLLGKKVGETTEIKVPAGMMEFEVLDI 155
>gi|329956657|ref|ZP_08297230.1| transcription elongation factor GreA [Bacteroides clarus YIT 12056]
gi|328524029|gb|EGF51105.1| transcription elongation factor GreA [Bacteroides clarus YIT 12056]
Length = 154
Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 97/151 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G++K+ +L+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ +L
Sbjct: 4 MSEEGYNKLLADLKQLETVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINKL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 64 KQVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GD+ + P G E++ + +
Sbjct: 124 AQGLLGKKVGDVAEIKVPQGMINLEVVNISF 154
>gi|225026969|ref|ZP_03716161.1| hypothetical protein EUBHAL_01225 [Eubacterium hallii DSM 3353]
gi|224955705|gb|EEG36914.1| hypothetical protein EUBHAL_01225 [Eubacterium hallii DSM 3353]
Length = 160
Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 92/149 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+TS+G ++ EL+ + +R I + I EAR GDLSENAEY AAK+ Q E R+ EL
Sbjct: 9 LTSQGMQALEDELQDLKVVKRKEIAQKIKEAREQGDLSENAEYDAAKDEQRSMEARIEEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E II AEVID S D ++ G+TV ++ ++ Y+IVG E+D+ GL+S SP+
Sbjct: 69 EKIIKNAEVIDESAYDKDTVSIGSTVKFYDEEFDEELEYRIVGSTESDILKGLISNESPL 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ LIG ++G+ + V +P G Y+IL +
Sbjct: 129 GKGLIGAKIGETVQVESPDGFSRYKILGI 157
>gi|163942129|ref|YP_001647013.1| transcription elongation factor GreA [Bacillus weihenstephanensis
KBAB4]
gi|229135202|ref|ZP_04264001.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST196]
gi|163864326|gb|ABY45385.1| transcription elongation factor GreA [Bacillus weihenstephanensis
KBAB4]
gi|228648244|gb|EEL04280.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST196]
Length = 175
Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 94/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 25 PMTQEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I+ + + G TV+ E GD++ Y IVG EAD G +S SP
Sbjct: 85 LENMIRNAVIIEDNGEESTVVTLGKTVTFKELPGGDEEAYIIVGSAEADPFEGRISNDSP 144
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 145 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 174
>gi|193214258|ref|YP_001995457.1| transcription elongation factor GreA [Chloroherpeton thalassium
ATCC 35110]
gi|238692700|sp|B3QV56|GREA_CHLT3 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|193087735|gb|ACF13010.1| transcription elongation factor GreA [Chloroherpeton thalassium
ATCC 35110]
Length = 158
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 99/155 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DK +T G++K++ EL + R ++++ I+EA+++GDLSENAEY+AAKE Q E
Sbjct: 1 MSDKTYLTKGGYNKLKDELDDLKTNVRQQVLEKITEAKSHGDLSENAEYEAAKEEQAQVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ LE +++ A ++D + D++ TV L + + ++ Y +V +EAD ++G +
Sbjct: 61 SRISTLERVLSTATILDEKDIKTDKVYILTTVLLKDLDRDEEVEYTLVSSEEADSENGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S+ SPI + L+GK +G+I+ + P G YE+L +
Sbjct: 121 SVKSPIGKNLLGKSVGEIVEIKVPKGIMRYEVLNI 155
>gi|288906006|ref|YP_003431228.1| transcription elongation factor [Streptococcus gallolyticus UCN34]
gi|306832025|ref|ZP_07465180.1| transcription elongation factor GreA [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|306834163|ref|ZP_07467283.1| transcription elongation factor GreA [Streptococcus bovis ATCC
700338]
gi|325978973|ref|YP_004288689.1| transcription elongation factor greA [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|288732732|emb|CBI14306.1| transcription elongation factor [Streptococcus gallolyticus UCN34]
gi|304423736|gb|EFM26882.1| transcription elongation factor GreA [Streptococcus bovis ATCC
700338]
gi|304425951|gb|EFM29068.1| transcription elongation factor GreA [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325178901|emb|CBZ48945.1| Transcription elongation factor greA [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
Length = 160
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 85/129 (65%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY AAK+ Q EG++ LE I AE+ID ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQIQILETKIRYAEIIDSDAVAKDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GDI+++ +P G
Sbjct: 88 AIGKTVTVEEVGTTDKDVYHIVGAAGADIFSGRISNESPIAQALIGKKTGDIVTIESPAG 147
Query: 147 EKTYEILQV 155
+I+ V
Sbjct: 148 SYDVKIVSV 156
>gi|326693573|ref|ZP_08230578.1| transcription elongation factor greA [Leuconostoc argentinum KCTC
3773]
Length = 160
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T++G +K+Q EL +RP I I AR+YGDLSEN+EYQ+AK+ Q EGR+
Sbjct: 7 FPMTAEGREKLQAELEDLISNQRPEITNRIQIARSYGDLSENSEYQSAKDEQAFVEGRIL 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L+ +I AE+ID + + D ++ G TV+ E + + Y IVG E+D +G +S S
Sbjct: 67 TLKKMIENAEIIDPNATASDEVSLGKTVTFKELPDEEPETYAIVGSTESDPLAGKISNES 126
Query: 125 PIARALIGKELGDIISVNAPGGEKT-YEILQV 155
+A AL+GK++GD ++V P G+ EIL+V
Sbjct: 127 AMAVALLGKKVGDKVAVPLPSGDSIEVEILKV 158
>gi|328554350|gb|AEB24842.1| transcription elongation factor GreA [Bacillus amyloliquefaciens
TA208]
gi|328912754|gb|AEB64350.1| Transcription elongation factor greA [Bacillus amyloliquefaciens
LL3]
Length = 157
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++QEL + +R +++ I AR++GDLSEN+EY +AKE Q EGR+
Sbjct: 7 FPMTQEGKQKLEQELEQLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LEN+I A++I+ S + + G TVS +E G++++Y IVG EAD G +S S
Sbjct: 67 TLENMIRNAKIIEDDGGS-NVVGLGKTVSFIELPDGEEESYTIVGSAEADPFEGKISNDS 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA++L+G+++ + ++V PGGE +I+++
Sbjct: 126 PIAKSLLGRKVDEEVTVQTPGGEMLVKIVKI 156
>gi|325285915|ref|YP_004261705.1| transcription elongation factor GreA [Cellulophaga lytica DSM 7489]
gi|324321369|gb|ADY28834.1| transcription elongation factor GreA [Cellulophaga lytica DSM 7489]
Length = 158
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 96/148 (64%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E ++++LE
Sbjct: 8 TAEGLKKLKDELNQLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLELKISKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I+ A +ID S + ++ +TV L +++G + Y +V + EAD+++G +S++SPI
Sbjct: 68 EIVAGARIIDESQLDTSKVLVLSTVKLKNQSNGMEMKYTLVAESEADLKTGKISVNSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK +GD + P G+ IL++
Sbjct: 128 KGLLGKSVGDEAEIAVPNGKIKLTILEI 155
>gi|300726104|ref|ZP_07059561.1| transcription elongation factor GreA [Prevotella bryantii B14]
gi|299776574|gb|EFI73127.1| transcription elongation factor GreA [Prevotella bryantii B14]
Length = 154
Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 85/140 (60%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ EL+ + E PR+ +AISEAR GDLSEN EY AAK Q GR+
Sbjct: 4 MSQEGYDKLVAELQHLTKVELPRVTEAISEARDKGDLSENFEYHAAKREQGRLLGRIRFK 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+N++ A VID S +S D + + V L + NY IV EA ++ G +SI SPI
Sbjct: 64 QNVLAHARVIDSSRLSADNVQLLSKVKLTNTGNNASMNYTIVSPHEASLKEGKISIKSPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+AL+ K++GD++ V P G
Sbjct: 124 AQALLNKKVGDVVEVRVPAG 143
>gi|34541325|ref|NP_905804.1| transcription elongation factor GreA [Porphyromonas gingivalis W83]
gi|188994287|ref|YP_001928539.1| putative transcription elongation factor [Porphyromonas gingivalis
ATCC 33277]
gi|34397641|gb|AAQ66703.1| transcription elongation factor GreA [Porphyromonas gingivalis W83]
gi|188593967|dbj|BAG32942.1| putative transcription elongation factor [Porphyromonas gingivalis
ATCC 33277]
Length = 156
Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 96/149 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DKI EL + +RP I + I+EAR GDLSENAEY AAKE Q + E ++A+L
Sbjct: 6 ITQEGYDKILAELAELESVQRPEISRQIAEARDKGDLSENAEYDAAKEAQGILETKIAQL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I A +ID S +S + + V++ +G Y +V D EA+++ +S+++PI
Sbjct: 66 KGLIANARIIDESQVSTESVQILNKVTIKNVKTGVVMAYTLVSDSEANLKENKISVNTPI 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++GD++S+ P G +EI+ +
Sbjct: 126 AQGLMGKKIGDLVSIKVPSGLVEFEIIDI 154
>gi|225619028|ref|YP_002720254.1| transcription elongation factor GreA [Brachyspira hyodysenteriae
WA1]
gi|225213847|gb|ACN82581.1| transcription elongation factor GreA [Brachyspira hyodysenteriae
WA1]
Length = 154
Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 96/152 (63%), Gaps = 5/152 (3%)
Query: 6 PVTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
P+T +G+DK + +L + E P II +EAR GDL ENAEY AAKE Q L ++
Sbjct: 4 PITKEGYDKAKSKLADLKAEFETLPAII---AEAREKGDLKENAEYHAAKEKQGLLNAQI 60
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++LE+ + E+ID + + D + FG V + +K+ Y+IVG+ EAD+ ++I
Sbjct: 61 SKLESDLAGCEIIDPANLDKDTVTFGKRVKVKDKSRNAVFEYRIVGELEADMSKNEITIV 120
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+PIA+ L+GK++GD++++ P G+K EIL++
Sbjct: 121 TPIAKGLLGKKIGDVVTIKVPAGDKVLEILEI 152
>gi|332982218|ref|YP_004463659.1| transcription elongation factor GreA [Mahella australiensis 50-1
BON]
gi|332699896|gb|AEE96837.1| transcription elongation factor GreA [Mahella australiensis 50-1
BON]
Length = 158
Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 90/149 (60%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +K+++EL + + +R I I +A A+GDLSENAEY AK Q EGR+ L
Sbjct: 8 LTVEGIEKLEKELEYLKTVKRREIAAKIKQALAFGDLSENAEYDEAKNEQAFVEGRIVTL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN++ A+VID ++ D++ G+TV L + GD + Y IVG EAD +S SP+
Sbjct: 68 ENMLRNAKVIDADEITTDKVTIGSTVVLRDIEMGDDEEYVIVGSAEADPFKHKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GK GDI+ + P G Y I+ +
Sbjct: 128 GKALLGKSKGDIVEITVPDGIIRYSIVDI 156
>gi|319952614|ref|YP_004163881.1| transcription elongation factor grea [Cellulophaga algicola DSM
14237]
gi|319421274|gb|ADV48383.1| transcription elongation factor GreA [Cellulophaga algicola DSM
14237]
Length = 158
Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 97/155 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K T +G K++ EL + ERP+ + I+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MSNKSYYTPEGLKKLRDELNQLKDIERPKASRDIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+++LE + A +ID S + ++ +TV L +N+G + Y +V + EAD+++G +
Sbjct: 61 LRISKLEETYSNARLIDESQLDTSKVLVLSTVKLKNQNNGMEMKYTLVAESEADLKTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S++SPI + L+GK++G+ + P G EIL++
Sbjct: 121 SVNSPIGKGLLGKKVGESAEITIPNGVLKLEILEI 155
>gi|259046507|ref|ZP_05736908.1| transcription elongation factor GreA [Granulicatella adiacens ATCC
49175]
gi|259036672|gb|EEW37927.1| transcription elongation factor GreA [Granulicatella adiacens ATCC
49175]
Length = 159
Score = 113 bits (282), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T +G K++ EL + +R I++ I AR+YGDLSEN+EY++AK+ Q
Sbjct: 1 MTEKVFPMTLEGKAKLEAELEELKVVKRKEIVERIKIARSYGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR++ LE +I AE+ID + + D ++ G V+ +E GD++ Y IVG EA+ G
Sbjct: 61 EGRISTLEKMIRFAEIIDDNNVEKDIVSLGRKVTFIELPDGDEETYTIVGSAEANPIEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+ +IGK+L + + + PGGE I+ +
Sbjct: 121 ISNDSPIAKGIIGKKLNEEVVIPTPGGEMKIRIIDI 156
>gi|163753412|ref|ZP_02160536.1| transcription elongation factor [Kordia algicida OT-1]
gi|161327144|gb|EDP98469.1| transcription elongation factor [Kordia algicida OT-1]
Length = 158
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 95/148 (64%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T++G K++ EL + ER + +AI+EAR GDLSENAEY AAKE Q L E R++++E
Sbjct: 8 TAEGLKKLRDELDHLKNVERLKASQAIAEARDKGDLSENAEYDAAKEAQGLLEMRISKME 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+++ A +ID S + ++ +TV + +G + Y +V + EAD+ +G +S++SPI
Sbjct: 68 AVLSTARIIDESQLDTSKVLVLSTVRIKNTTNGMEMTYTLVAESEADLAAGKISVTSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK +G+I V P G +E+L++
Sbjct: 128 KGLLGKSVGEIAEVKVPNGIMKFEVLEI 155
>gi|110638033|ref|YP_678241.1| transcription elongation factor GreA [Cytophaga hutchinsonii ATCC
33406]
gi|110280714|gb|ABG58900.1| transcription elongation factor GreA [Cytophaga hutchinsonii ATCC
33406]
Length = 158
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 97/148 (65%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G +K++ EL + + R +I I+EAR GDLSENAEY AAK+ Q L E ++++LE
Sbjct: 9 TEEGLNKLKNELSHLKTKGRSQIAAQIAEARDKGDLSENAEYDAAKDAQGLLELKISKLE 68
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I++ A ++D ST+ + + V + K +G Y +V ++EAD+++G +S+ SPI
Sbjct: 69 EIVSNARLLDESTIDTSKASILTKVKIKNKKTGHIVEYTLVSEEEADLKAGRISLKSPIG 128
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+G+E+G+ + V+ P G+ +EIL +
Sbjct: 129 KALLGREVGETVLVDVPAGKIEFEILDI 156
>gi|313885264|ref|ZP_07819016.1| transcription elongation factor GreA [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619955|gb|EFR31392.1| transcription elongation factor GreA [Eremococcus coleocola
ACS-139-V-Col8]
Length = 159
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 86/129 (66%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
R II+ I AR++GDLSEN+EY+AAK+ Q + EGR+A +EN+I AE+ID + D +
Sbjct: 28 RKEIIERIKIARSFGDLSENSEYEAAKDEQAMLEGRIATIENMIRFAEIIDDKHVDEDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ G V+ E GD+++Y IVG EAD +S SPIA++LIGK+LG I+S+ +PGG
Sbjct: 88 SLGRKVTFKELPDGDEESYIIVGSAEADPMEFKISNDSPIAKSLIGKKLGQIVSIESPGG 147
Query: 147 EKTYEILQV 155
EI +
Sbjct: 148 AFDVEITNI 156
>gi|189459948|ref|ZP_03008733.1| hypothetical protein BACCOP_00581 [Bacteroides coprocola DSM 17136]
gi|189433321|gb|EDV02306.1| hypothetical protein BACCOP_00581 [Bacteroides coprocola DSM 17136]
Length = 202
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 96/151 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q + E ++ +L
Sbjct: 52 MSEEGYQKLVAELKHLESVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINQL 111
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 112 KATIGDAKIIDTSKLKADTVQILTRVELKNVKTGMKMAYTIVSETEANLKLGKISVNTPI 171
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GDI + P G+ + E+ + +
Sbjct: 172 AQGLLGKKVGDIAEITIPQGKISLEVTGISF 202
>gi|229822854|ref|ZP_04448924.1| hypothetical protein GCWU000282_00143 [Catonella morbi ATCC 51271]
gi|229787667|gb|EEP23781.1| hypothetical protein GCWU000282_00143 [Catonella morbi ATCC 51271]
Length = 159
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 97/150 (64%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + +R II+ I AR+YGDLSEN+EY AAK+ Q EGR++
Sbjct: 7 PMTLEGKAKLEAELEDLKVNKRKEIIERIKIARSYGDLSENSEYDAAKDEQAFVEGRISV 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E +I A++ID ++ D + G TVS +E D+++Y IVG EAD +S SP
Sbjct: 67 IEKMIRFAQIIDDRDVADDVVTLGRTVSFIELPGSDEESYTIVGSAEADPLEAKISNDSP 126
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA+A+IGK+LGD+++V PGG +I ++
Sbjct: 127 IAKAIIGKKLGDVVTVETPGGSFDLKITKI 156
>gi|162451849|ref|YP_001614216.1| hypothetical protein sce3576 [Sorangium cellulosum 'So ce 56']
gi|161162431|emb|CAN93736.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
Length = 157
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 3/158 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLN 59
M D +T G ++ +EL + ERPR+++ +++A A GD SENAEY K+L+ ++
Sbjct: 1 MSDPAYITPSGARRLSEELARLRSVERPRVVQEVADAAAQGDRSENAEYIYGKKKLREID 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
RM L + +A V+D S GD++ FGATV +E G ++ YQIVG+ E D +G
Sbjct: 61 R-RMHYLTKRLEKAVVVDPSEQRGDKVFFGATVE-IEDEDGARRTYQIVGEDEIDSAAGR 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S SP+ R+L+GK GD+I+V P GE E++ V +
Sbjct: 119 ISWRSPVGRSLLGKRAGDVITVRRPAGEAEMELISVRY 156
>gi|220930922|ref|YP_002507830.1| transcription elongation factor GreA [Halothermothrix orenii H 168]
gi|219992232|gb|ACL68835.1| transcription elongation factor GreA [Halothermothrix orenii H 168]
Length = 161
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 97/155 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++ +T +G++K+++EL + +R ++ K I AR +GD+ EN+EY AK Q E
Sbjct: 1 MANEVLLTQEGYEKLEKELDYLVNVKRRQVAKRIKVAREFGDIGENSEYDDAKNEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ E+EN++ A +I ++GD + G TV L ++++ + +Y IVG EAD + +
Sbjct: 61 GRIKEIENMLRNARIIKDEEVTGDTVNLGTTVKLKDRSTDEVFSYTIVGSAEADPLNFKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +A+IG ++GD++ V P G YEIL +
Sbjct: 121 SNESPIGKAIIGHKIGDVVKVEVPSGIMEYEILAI 155
>gi|22537752|ref|NP_688603.1| transcription elongation factor GreA [Streptococcus agalactiae
2603V/R]
gi|25011701|ref|NP_736096.1| transcription elongation factor GreA [Streptococcus agalactiae
NEM316]
gi|76787850|ref|YP_330230.1| transcription elongation factor GreA [Streptococcus agalactiae
A909]
gi|76798458|ref|ZP_00780696.1| Transcription elongation factor greA (Transcript cleavage
factorgreA) [Streptococcus agalactiae 18RS21]
gi|77405807|ref|ZP_00782891.1| transcription elongation factor GreA [Streptococcus agalactiae
H36B]
gi|77408492|ref|ZP_00785230.1| transcription elongation factor GreA [Streptococcus agalactiae
COH1]
gi|77411916|ref|ZP_00788247.1| transcription elongation factor GreA [Streptococcus agalactiae
CJB111]
gi|77414235|ref|ZP_00790397.1| transcription elongation factor GreA [Streptococcus agalactiae 515]
gi|81456125|sp|Q8E3U5|GREA_STRA3 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|81744339|sp|Q8DY80|GREA_STRA5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123601405|sp|Q3JZS3|GREA_STRA1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|22534643|gb|AAN00476.1|AE014265_5 transcription elongation factor GreA [Streptococcus agalactiae
2603V/R]
gi|24413241|emb|CAD47320.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562907|gb|ABA45491.1| transcription elongation factor GreA [Streptococcus agalactiae
A909]
gi|76586192|gb|EAO62712.1| Transcription elongation factor greA (Transcript cleavage
factorgreA) [Streptococcus agalactiae 18RS21]
gi|77159724|gb|EAO70873.1| transcription elongation factor GreA [Streptococcus agalactiae 515]
gi|77162013|gb|EAO72993.1| transcription elongation factor GreA [Streptococcus agalactiae
CJB111]
gi|77172934|gb|EAO76065.1| transcription elongation factor GreA [Streptococcus agalactiae
COH1]
gi|77175594|gb|EAO78379.1| transcription elongation factor GreA [Streptococcus agalactiae
H36B]
gi|319745513|gb|EFV97815.1| transcription elongation factor GreA [Streptococcus agalactiae ATCC
13813]
Length = 160
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 82/129 (63%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY AAK+ Q EG++ LE I AE+ID ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQIQILETKIRYAEIIDSDAVAKDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV + E + DK Y IVG AD+ SG +S SPIA ALIGK+ GD+ ++ +P G
Sbjct: 88 AIGKTVLVQEVGTNDKDTYHIVGAAGADIFSGKISNESPIAHALIGKKTGDLATIESPAG 147
Query: 147 EKTYEILQV 155
EI+ V
Sbjct: 148 SYQVEIISV 156
>gi|218131388|ref|ZP_03460192.1| hypothetical protein BACEGG_03004 [Bacteroides eggerthii DSM 20697]
gi|317476400|ref|ZP_07935649.1| transcription elongation factor GreA [Bacteroides eggerthii
1_2_48FAA]
gi|217986320|gb|EEC52657.1| hypothetical protein BACEGG_03004 [Bacteroides eggerthii DSM 20697]
gi|316907426|gb|EFV29131.1| transcription elongation factor GreA [Bacteroides eggerthii
1_2_48FAA]
Length = 154
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 97/151 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G++K+ +L+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ +L
Sbjct: 4 MSEEGYNKLLADLKQLETVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINKL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 64 KQVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GD+ + P G E++ + +
Sbjct: 124 AQGLLGKKVGDVAEIKVPQGIINLEVVNISF 154
>gi|87311291|ref|ZP_01093413.1| transcription elongation factor greA [Blastopirellula marina DSM
3645]
gi|87286031|gb|EAQ77943.1| transcription elongation factor greA [Blastopirellula marina DSM
3645]
Length = 163
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 100/157 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+ P++ KGFDK++ +L + E PRI + I+ AR GDL ENAEY A+E Q + +
Sbjct: 4 MADRNPMSRKGFDKLKADLDHLESVEMPRITEKIATAREEGDLKENAEYHGARETQGMIQ 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ +++ ++RA +ID +++ + F AT+++ + + ++ Y +VG+ E D + +
Sbjct: 64 AKIHAIKSKLSRAYIIDPASIDQSVVGFFATITVEDLDMDEEDTYTLVGNGEEDFMNNKI 123
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+A++L+G ++GD++ + AP G +IL++ +
Sbjct: 124 LIDSPMAQSLLGHKVGDVVPIEAPKGTYELKILKIEY 160
>gi|330718836|ref|ZP_08313436.1| transcription elongation factor GreA [Leuconostoc fallax KCTC 3537]
Length = 159
Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 86/142 (60%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G ++QEL +RP I K I AR+YGDLSEN+EYQ+AK+ Q EGR+
Sbjct: 7 FPMTLEGKTSLEQELDNLIAVQRPEITKRIQIARSYGDLSENSEYQSAKDEQAFVEGRIQ 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ +I AE+ID++ + D ++ G TV+ E + + Y IVG EAD SG +S S
Sbjct: 67 TIRKMIENAEIIDVADTASDEVSLGKTVTFKELPDEEAETYTIVGSVEADPLSGKISNES 126
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+A ALI ++GD + V P G
Sbjct: 127 PMANALINHKVGDTVDVPLPNG 148
>gi|225013112|ref|ZP_03703526.1| transcription elongation factor GreA [Flavobacteria bacterium
MS024-2A]
gi|225002770|gb|EEG40752.1| transcription elongation factor GreA [Flavobacteria bacterium
MS024-2A]
Length = 158
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 94/148 (63%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E +A++E
Sbjct: 8 TEEGLKKLRAELNHLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLEMHIAKME 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
N+++ A +I+ S + ++ +TV + K +G Y +V EAD+++G +S+ SPI
Sbjct: 68 NVLSNARIINESELDTSKVLVLSTVEVKNKVNGGSMKYTLVAQSEADLKTGKISVDSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK++G+I ++ P G E++ +
Sbjct: 128 KGLLGKKVGEIAVISVPNGSIELEVISI 155
>gi|167763703|ref|ZP_02435830.1| hypothetical protein BACSTE_02081 [Bacteroides stercoris ATCC
43183]
gi|167697819|gb|EDS14398.1| hypothetical protein BACSTE_02081 [Bacteroides stercoris ATCC
43183]
Length = 154
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 97/151 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G++K+ +L+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ +L
Sbjct: 4 MSEEGYNKLLADLKQLETIERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINKL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 64 KQVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GD+ + P G E++ + +
Sbjct: 124 AQGLLGKKVGDVAEIKVPQGIINLEVVNISF 154
>gi|325299317|ref|YP_004259234.1| transcription elongation factor GreA [Bacteroides salanitronis DSM
18170]
gi|324318870|gb|ADY36761.1| transcription elongation factor GreA [Bacteroides salanitronis DSM
18170]
Length = 151
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 95/146 (65%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+++ AI+EAR GDLSENAEY AAKE Q + E ++ +L
Sbjct: 1 MSEEGYQKLVAELKHLEAVERPKVVAAIAEARDKGDLSENAEYDAAKEAQAMLEMKINQL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 61 KATIGDAKIIDTSKLKADTVQILSRVELKNVKTGMKMAYTIVSETEANLKQGKISVNTPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
A+ L+GK++GD+ + P G+ + E+
Sbjct: 121 AQGLLGKKVGDVAEITIPQGKISLEV 146
>gi|20808737|ref|NP_623908.1| transcription elongation factor GreA [Thermoanaerobacter
tengcongensis MB4]
gi|25452988|sp|Q8R7N0|GREA_THETN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|20517379|gb|AAM25512.1| Transcription elongation factor [Thermoanaerobacter tengcongensis
MB4]
Length = 157
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 95/155 (61%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G K+++EL + + +R + + I +ARA+GDLSEN+EY AK Q E
Sbjct: 1 MSKPVILTYEGLKKLEEELEYLKTVKRAEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+A LE ++ A+VID + D ++ G TV + ++ ++ Y IVG EAD + +
Sbjct: 61 GRIATLEAMLKNAKVIDEEDIKLDEVSIGCTVKVFDETYNEEVEYTIVGSAEADPMNNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +AL+GK++G+ ISV P G +IL++
Sbjct: 121 SDESPIGKALLGKKVGETISVEVPAGVIKLKILEI 155
>gi|255693071|ref|ZP_05416746.1| transcription elongation factor GreA [Bacteroides finegoldii DSM
17565]
gi|260621111|gb|EEX43982.1| transcription elongation factor GreA [Bacteroides finegoldii DSM
17565]
Length = 154
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 96/151 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +L
Sbjct: 4 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINKL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 64 KTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++G++ + P G+ E++ + +
Sbjct: 124 AQGLLGKKVGEVAEITVPQGKIALEVVNISF 154
>gi|94993684|ref|YP_601782.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS10750]
gi|94547192|gb|ABF37238.1| Transcription elongation factor greA [Streptococcus pyogenes
MGAS10750]
Length = 176
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 82/129 (63%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP I++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D +
Sbjct: 44 RPEIVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRYAEIIDSDAVAKDEV 103
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GD + + +P
Sbjct: 104 AIGKTVIVHEVGTTDKDTYHIVGAAGADIFSGKISNESPIAQALIGKKTGDKVRIESPAA 163
Query: 147 EKTYEILQV 155
EI+ V
Sbjct: 164 TYDVEIISV 172
>gi|257885237|ref|ZP_05664890.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,501]
gi|257821089|gb|EEV48223.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,501]
Length = 159
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +EN+I A++ID + D ++ G TV+ +E GD++ Y IVG EAD SG
Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGDEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+ALIGK D +++ PGG+ +I++V
Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKV 156
>gi|237713952|ref|ZP_04544433.1| transcription elongation factor greA [Bacteroides sp. D1]
gi|237722892|ref|ZP_04553373.1| transcription elongation factor greA [Bacteroides sp. 2_2_4]
gi|262409139|ref|ZP_06085683.1| transcription elongation factor GreB [Bacteroides sp. 2_1_22]
gi|294647463|ref|ZP_06725046.1| putative transcription elongation factor GreA [Bacteroides ovatus
SD CC 2a]
gi|294808933|ref|ZP_06767658.1| putative transcription elongation factor GreA [Bacteroides
xylanisolvens SD CC 1b]
gi|298482232|ref|ZP_07000419.1| transcription elongation factor GreA [Bacteroides sp. D22]
gi|229446108|gb|EEO51899.1| transcription elongation factor greA [Bacteroides sp. D1]
gi|229447414|gb|EEO53205.1| transcription elongation factor greA [Bacteroides sp. 2_2_4]
gi|262352886|gb|EEZ01982.1| transcription elongation factor GreB [Bacteroides sp. 2_1_22]
gi|292637173|gb|EFF55608.1| putative transcription elongation factor GreA [Bacteroides ovatus
SD CC 2a]
gi|294443868|gb|EFG12610.1| putative transcription elongation factor GreA [Bacteroides
xylanisolvens SD CC 1b]
gi|295085264|emb|CBK66787.1| transcription elongation factor GreA [Bacteroides xylanisolvens
XB1A]
gi|298271519|gb|EFI13093.1| transcription elongation factor GreA [Bacteroides sp. D22]
Length = 176
Score = 112 bits (279), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 94/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +L
Sbjct: 26 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINKL 85
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 86 KATIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 145
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++GD+ + P G+ E++ +
Sbjct: 146 AQGLLGKKVGDVAEITVPQGKIALEVVNI 174
>gi|229013597|ref|ZP_04170728.1| Transcription elongation factor greA [Bacillus mycoides DSM 2048]
gi|229062075|ref|ZP_04199400.1| Transcription elongation factor greA [Bacillus cereus AH603]
gi|229169123|ref|ZP_04296838.1| Transcription elongation factor greA [Bacillus cereus AH621]
gi|228614351|gb|EEK71461.1| Transcription elongation factor greA [Bacillus cereus AH621]
gi|228717227|gb|EEL68902.1| Transcription elongation factor greA [Bacillus cereus AH603]
gi|228747656|gb|EEL97528.1| Transcription elongation factor greA [Bacillus mycoides DSM 2048]
Length = 175
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/150 (40%), Positives = 93/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 25 PMTQEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I A +I+ + + G TV E GD++ Y IVG EAD G +S SP
Sbjct: 85 LENMIRNAVIIEDNGEESTVVTLGKTVIFKELPGGDEEAYIIVGSAEADPFEGRISNDSP 144
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 145 IAKSLLGKQIGEKVAIQTPGGEMQVEIISV 174
>gi|257893581|ref|ZP_05673234.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,408]
gi|260560508|ref|ZP_05832682.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium C68]
gi|261209025|ref|ZP_05923430.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium TC 6]
gi|289565163|ref|ZP_06445615.1| transcription elongation factor greA [Enterococcus faecium D344SRF]
gi|293553245|ref|ZP_06673882.1| transcription elongation factor GreA [Enterococcus faecium E1039]
gi|293563598|ref|ZP_06678044.1| transcription elongation factor GreA [Enterococcus faecium E1162]
gi|293569322|ref|ZP_06680620.1| transcription elongation factor GreA [Enterococcus faecium E1071]
gi|294615287|ref|ZP_06695163.1| transcription elongation factor GreA [Enterococcus faecium E1636]
gi|294619052|ref|ZP_06698547.1| transcription elongation factor GreA [Enterococcus faecium E1679]
gi|314939785|ref|ZP_07847005.1| transcription elongation factor GreA [Enterococcus faecium
TX0133a04]
gi|314942020|ref|ZP_07848880.1| transcription elongation factor GreA [Enterococcus faecium TX0133C]
gi|314950014|ref|ZP_07853307.1| transcription elongation factor GreA [Enterococcus faecium TX0082]
gi|314953536|ref|ZP_07856448.1| transcription elongation factor GreA [Enterococcus faecium TX0133A]
gi|314992151|ref|ZP_07857598.1| transcription elongation factor GreA [Enterococcus faecium TX0133B]
gi|314995129|ref|ZP_07860245.1| transcription elongation factor GreA [Enterococcus faecium
TX0133a01]
gi|257829960|gb|EEV56567.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,408]
gi|260073510|gb|EEW61838.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium C68]
gi|260077064|gb|EEW64786.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium TC 6]
gi|289162984|gb|EFD10832.1| transcription elongation factor greA [Enterococcus faecium D344SRF]
gi|291588028|gb|EFF19878.1| transcription elongation factor GreA [Enterococcus faecium E1071]
gi|291591845|gb|EFF23478.1| transcription elongation factor GreA [Enterococcus faecium E1636]
gi|291594713|gb|EFF26095.1| transcription elongation factor GreA [Enterococcus faecium E1679]
gi|291602655|gb|EFF32870.1| transcription elongation factor GreA [Enterococcus faecium E1039]
gi|291604448|gb|EFF33936.1| transcription elongation factor GreA [Enterococcus faecium E1162]
gi|313590620|gb|EFR69465.1| transcription elongation factor GreA [Enterococcus faecium
TX0133a01]
gi|313593292|gb|EFR72137.1| transcription elongation factor GreA [Enterococcus faecium TX0133B]
gi|313594459|gb|EFR73304.1| transcription elongation factor GreA [Enterococcus faecium TX0133A]
gi|313599197|gb|EFR78042.1| transcription elongation factor GreA [Enterococcus faecium TX0133C]
gi|313640925|gb|EFS05505.1| transcription elongation factor GreA [Enterococcus faecium
TX0133a04]
gi|313643661|gb|EFS08241.1| transcription elongation factor GreA [Enterococcus faecium TX0082]
Length = 159
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +EN+I A++ID + D ++ G TV+ +E GD++ Y IVG EAD SG
Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGDEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+ALIGK D +++ PGG+ +I++V
Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKV 156
>gi|15674504|ref|NP_268678.1| transcription elongation factor GreA [Streptococcus pyogenes M1
GAS]
gi|19745512|ref|NP_606648.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS8232]
gi|28896516|ref|NP_802866.1| transcription elongation factor GreA [Streptococcus pyogenes SSI-1]
gi|50913667|ref|YP_059639.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS10394]
gi|56808752|ref|ZP_00366470.1| COG0782: Transcription elongation factor [Streptococcus pyogenes
M49 591]
gi|71902951|ref|YP_279754.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS6180]
gi|71910107|ref|YP_281657.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS5005]
gi|94987924|ref|YP_596025.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS9429]
gi|94989799|ref|YP_597899.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS10270]
gi|94991808|ref|YP_599907.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS2096]
gi|209558851|ref|YP_002285323.1| transcription elongation factor GreA [Streptococcus pyogenes NZ131]
gi|306827965|ref|ZP_07461232.1| transcription elongation factor GreA [Streptococcus pyogenes ATCC
10782]
gi|13621606|gb|AAK33399.1| putative transcription elongation factor [Streptococcus pyogenes M1
GAS]
gi|19747630|gb|AAL97147.1| putative transcription elongation factor [Streptococcus pyogenes
MGAS8232]
gi|28811770|dbj|BAC64699.1| putative transcription elongation factor [Streptococcus pyogenes
SSI-1]
gi|50902741|gb|AAT86456.1| Transcription elongation factor [Streptococcus pyogenes MGAS10394]
gi|71802046|gb|AAX71399.1| transcription elongation factor [Streptococcus pyogenes MGAS6180]
gi|71852889|gb|AAZ50912.1| transcription elongation factor [Streptococcus pyogenes MGAS5005]
gi|94541432|gb|ABF31481.1| transcription elongation factor [Streptococcus pyogenes MGAS9429]
gi|94543307|gb|ABF33355.1| Transcription elongation factor greA [Streptococcus pyogenes
MGAS10270]
gi|94545316|gb|ABF35363.1| Transcription elongation factor greA [Streptococcus pyogenes
MGAS2096]
gi|209540052|gb|ACI60628.1| Transcription elongation factor GreA [Streptococcus pyogenes NZ131]
gi|304429884|gb|EFM32926.1| transcription elongation factor GreA [Streptococcus pyogenes ATCC
10782]
Length = 176
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 82/129 (63%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP I++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D +
Sbjct: 44 RPEIVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRYAEIIDSDAVAKDEV 103
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GD + + +P
Sbjct: 104 AIGKTVIVQEVGTTDKDTYHIVGAAGADIFSGKISNESPIAQALIGKKTGDKVRIESPAA 163
Query: 147 EKTYEILQV 155
EI+ V
Sbjct: 164 TYDVEIISV 172
>gi|302327915|gb|ADL27116.1| transcription elongation factor GreA [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 155
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 99/155 (63%), Gaps = 6/155 (3%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKE-LQNLNE 60
++KI T + +DK+ ++L + ERPR+++ + +ARA GDLSENAEY AAKE L +++
Sbjct: 1 MEKIMFTQEAYDKLVKDLENLKNVERPRVLQELVDARAQGDLSENAEYHAAKERLASIDN 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN--YQIVGDQEADVQSG 118
M +L++ + RA+VI S D I FGAT++ KN K+ YQ+V +EAD +G
Sbjct: 61 IEMPKLQDQLARAQVIAFDANS-DTIKFGATIT--AKNLKTKREIVYQLVSPEEADALNG 117
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
+S SPI AL+GK+ GD + V P G+ +EI+
Sbjct: 118 KISFKSPIGAALMGKKRGDTVEVVTPKGKNQFEII 152
>gi|260583976|ref|ZP_05851724.1| transcription elongation factor GreA [Granulicatella elegans ATCC
700633]
gi|260158602|gb|EEW93670.1| transcription elongation factor GreA [Granulicatella elegans ATCC
700633]
Length = 159
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T +G K++ EL + +R I++ I AR+YGDLSEN+EY++AK+ Q
Sbjct: 1 MTEKLYPMTLEGKAKLEAELEELKVVKRKEIVERIKIARSYGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE +I AE+ID + + D ++ G ++ +E G++++Y IVG EA+ G
Sbjct: 61 EGRITTLEKMIRFAEIIDDNNVEKDVVSLGRKITFIELPDGEEESYTIVGSAEANPIEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+ +IGK+L D + + PGG+ +I ++
Sbjct: 121 ISNDSPIAKGIIGKKLNDEVVIQTPGGDMKVKITKI 156
>gi|268316677|ref|YP_003290396.1| transcription elongation factor GreA [Rhodothermus marinus DSM
4252]
gi|262334211|gb|ACY48008.1| transcription elongation factor GreA [Rhodothermus marinus DSM
4252]
Length = 159
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 96/157 (61%), Gaps = 2/157 (1%)
Query: 1 MVDKIPV--TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M D PV T + K+++EL + +ER RI KAI+EAR +GDLSENAEY AAKE Q
Sbjct: 1 MQDPKPVYLTREALQKLKEELHELKTKERARIAKAIAEARGHGDLSENAEYDAAKEAQGR 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+A++E I A ++D + + + + V + +G ++ + +V QE ++ G
Sbjct: 61 LEARIAQIEQTIANARIVDENKIDTSKAYIFSKVRVKNLQTGAEQVFTLVSPQEVNLNEG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S++SPI + L+G+ +GD++ V P G+ +IL++
Sbjct: 121 KISVNSPIGKGLLGRSVGDVVEVKVPAGKVKLQILEI 157
>gi|332885551|gb|EGK05797.1| hypothetical protein HMPREF9456_02061 [Dysgonomonas mossii DSM
22836]
Length = 156
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 97/149 (65%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G+ K+++E+ + ERP I K I+EAR GDLSENAEY AAKE Q L E ++A++
Sbjct: 6 MTAEGYKKLKEEINTLETTERPAISKQIAEARDKGDLSENAEYDAAKEAQGLLEAKIAQM 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+N++ A +I+ ++ D + V++ + K Y IV + EA+++ +++++PI
Sbjct: 66 KNLLANARLINEDSIGTDVVQILNKVTIRNTKNNQKMTYTIVAESEANLKENKMAVNTPI 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++GD+ + P G ++EI+ +
Sbjct: 126 AQGLMGKKVGDVAEIKVPSGIMSFEIMDI 154
>gi|88801364|ref|ZP_01116892.1| putative transcription elongation factor [Polaribacter irgensii
23-P]
gi|88782022|gb|EAR13199.1| putative transcription elongation factor [Polaribacter irgensii
23-P]
Length = 166
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 96/148 (64%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
+ +G K++ EL +Q ERPR+ I++AR GDLSENAEY AAKE Q+ E ++A+L+
Sbjct: 16 SPEGLKKLRDELVQLEQVERPRVTVEIADARDKGDLSENAEYHAAKEEQSHLEFKIAKLK 75
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
N+I+ A ++D S + ++ + V + +G + Y++V D E DV++G +S++SPI
Sbjct: 76 NVISGARILDESQLDTSKVLIHSNVVIKNAINGAEFTYRLVADSETDVRNGKLSVNSPIG 135
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK++G++ + P G +EI+ +
Sbjct: 136 KGLLGKKVGEVAEIQVPSGIMKFEIMAI 163
>gi|307721519|ref|YP_003892659.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM
16294]
gi|306979612|gb|ADN09647.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM
16294]
Length = 174
Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 97/154 (62%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P++ +G+DK+ +E ++ + E+P++ A A GD SENA+YQAAKE + R+
Sbjct: 2 KEPMSIEGYDKLIEEFKYLLEVEKPKVAHEKLVAAALGDRSENADYQAAKEKLRFIDKRL 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L +I + +ID S ++AFG++V+LV ++ D++ Y I G E++ ++GL+SI
Sbjct: 62 FYLNKMIQSSHIIDPSLHEHKQVAFGSSVTLVNIDTEDEEIYTICGVLESEPENGLISIH 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A+A++GK+ GD + P K YEI ++ +
Sbjct: 122 SPLAKAMLGKKEGDEFKIQLPNALKEYEIQKIKY 155
>gi|299147539|ref|ZP_07040603.1| transcription elongation factor GreA [Bacteroides sp. 3_1_23]
gi|298514326|gb|EFI38211.1| transcription elongation factor GreA [Bacteroides sp. 3_1_23]
Length = 154
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 95/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +L
Sbjct: 4 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINKL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 64 KATIADAKIIDESKLKTDSVQILSKVELKNVKNGMKMIYTIVSESEANLKEGKISVNTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++GD+ + P G+ E++ +
Sbjct: 124 AQGLLGKKVGDVAEITVPQGKIALEVVNI 152
>gi|300214537|gb|ADJ78953.1| Transcription elongation factor [Lactobacillus salivarius CECT
5713]
Length = 156
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q E R+
Sbjct: 6 FPMTLEGKEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFMEARIK 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
E++N++ AE+ID ++ + +A G TV+ E + + + YQIVG EAD G +S S
Sbjct: 66 EIQNMLNHAEIIDNKSIDENEVAVGKTVTFQEDDD-EPETYQIVGAAEADPFEGKISNES 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA LIG +LGDI+S++ PGG +I+ V
Sbjct: 125 PIASGLIGHKLGDIVSIDTPGGTMQVKIIDV 155
>gi|241895036|ref|ZP_04782332.1| elongation factor GreA [Weissella paramesenteroides ATCC 33313]
gi|241871754|gb|EER75505.1| elongation factor GreA [Weissella paramesenteroides ATCC 33313]
Length = 161
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 92/152 (60%), Gaps = 1/152 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G KI++EL E R I I AR++GDLSEN+EY +AK+ Q EGR+
Sbjct: 7 FPMTLEGKAKIEEELNTLITETRSEITGRIQLARSFGDLSENSEYASAKDEQAFVEGRIK 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L+N++ AE+ID S ++ D +A G V+ E + ++Y IVG EA+ G +S S
Sbjct: 67 TLQNMLDNAEIIDSSEIADDEVAVGKKVTFKELPDEEPESYSIVGAVEANPSEGKISNES 126
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQV 155
PIA ALIG ++GD +SV P G + EIL V
Sbjct: 127 PIAAALIGHKVGDTVSVTLPNGFDMEIEILSV 158
>gi|184155762|ref|YP_001844102.1| transcription elongation factor GreA [Lactobacillus fermentum IFO
3956]
gi|227515646|ref|ZP_03945695.1| elongation factor GreA [Lactobacillus fermentum ATCC 14931]
gi|260663522|ref|ZP_05864412.1| transcription elongation factor GreA [Lactobacillus fermentum
28-3-CHN]
gi|238692987|sp|B2GD90|GREA_LACF3 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|183227106|dbj|BAG27622.1| transcription elongation factor GreA [Lactobacillus fermentum IFO
3956]
gi|227086076|gb|EEI21388.1| elongation factor GreA [Lactobacillus fermentum ATCC 14931]
gi|260552063|gb|EEX25116.1| transcription elongation factor GreA [Lactobacillus fermentum
28-3-CHN]
Length = 158
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 94/151 (62%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T+ G K++QEL + RP +I I AR+YGDLSEN+EY++AK+ Q EGR++
Sbjct: 7 FPMTADGKAKLEQELEDLRLVRRPEVINRIKIARSYGDLSENSEYESAKDEQAFVEGRIS 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
++E ++ A +ID ++ D ++ G ++ E + ++Y IVG+ E+D SG +S S
Sbjct: 67 QIETMLQYAVIIDNEDVAADEVSMGREITFQELPDEEPESYTIVGESESDPLSGKISNES 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+A+ L+G ++GD + + P G +IL V
Sbjct: 127 PMAKGLLGHKVGDTVEIEIPNGSMKVKILSV 157
>gi|329117237|ref|ZP_08245954.1| transcription elongation factor GreA [Streptococcus parauberis NCFD
2020]
gi|326907642|gb|EGE54556.1| transcription elongation factor GreA [Streptococcus parauberis NCFD
2020]
Length = 160
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 81/129 (62%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+I+ ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRFAEIINSDDVAKDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV + E + DK Y IVG AD+ SG +S SPIA ALIGK+ GDI+ + P
Sbjct: 88 AIGKTVVVKEVGTNDKDTYHIVGAAGADIFSGKISNESPIAHALIGKKKGDIVKIETPAA 147
Query: 147 EKTYEILQV 155
EI+ V
Sbjct: 148 TYDVEIISV 156
>gi|251781820|ref|YP_002996122.1| transcription elongation factor GreA [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|242390449|dbj|BAH80908.1| transcription elongation factor [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|322411166|gb|EFY02074.1| transcription elongation factor GreA [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
gi|323126633|gb|ADX23930.1| transcription elongation factor GreA [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
Length = 160
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 82/129 (63%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRYAEIIDSDAVAKDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GD + + +P
Sbjct: 88 AIGKTVVVQEVGTTDKDTYHIVGAAGADIFSGKISNESPIAQALIGKKTGDKVRIESPAA 147
Query: 147 EKTYEILQV 155
EI+ V
Sbjct: 148 TYDVEIISV 156
>gi|302390918|ref|YP_003826738.1| transcription elongation factor GreA [Acetohalobium arabaticum DSM
5501]
gi|302202995|gb|ADL11673.1| transcription elongation factor GreA [Acetohalobium arabaticum DSM
5501]
Length = 157
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 98/155 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K+ +T +G +K+++EL + + +R + K I +A +GD+SEN+EY AK Q E
Sbjct: 1 MAEKVILTKEGLNKLEEELSYLKGTKRREVAKRIKQALEFGDISENSEYDDAKNEQAFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ E+EN++ AEVI+ + + G TV++ + ++ ++ NY+IVG EAD +
Sbjct: 61 GRIKEIENMLNNAEVINEDEVETTEVNIGTTVTIRDLDTEEEYNYKIVGTTEADPFENKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ AL+G ++G+ + ++AP G+ Y+IL +
Sbjct: 121 SNDSPVGNALLGHKIGEEVEIDAPAGKIVYKILAI 155
>gi|21909791|ref|NP_664059.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS315]
gi|139474369|ref|YP_001129085.1| transcription elongation factor GreA [Streptococcus pyogenes str.
Manfredo]
gi|54037221|sp|P64286|GREA_STRP3 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54037222|sp|P64287|GREA_STRP8 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54041331|sp|P64285|GREA_STRP1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|73919710|sp|Q5XDQ7|GREA_STRP6 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166200973|sp|A2RGA4|GREA_STRPG RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|21903976|gb|AAM78862.1| putative transcription elongation factor [Streptococcus pyogenes
MGAS315]
gi|134272616|emb|CAM30883.1| transcription elongation factor [Streptococcus pyogenes str.
Manfredo]
Length = 160
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 82/129 (63%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP I++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D +
Sbjct: 28 RPEIVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRYAEIIDSDAVAKDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GD + + +P
Sbjct: 88 AIGKTVIVQEVGTTDKDTYHIVGAAGADIFSGKISNESPIAQALIGKKTGDKVRIESPAA 147
Query: 147 EKTYEILQV 155
EI+ V
Sbjct: 148 TYDVEIISV 156
>gi|328479717|gb|EGF48865.1| transcription elongation factor GreA [Lactobacillus rhamnosus MTCC
5462]
Length = 134
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 91/133 (68%), Gaps = 2/133 (1%)
Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
+ ++RP +I+ I AR +GDLSEN+EY+AAK+ Q+ E R+ ++ ++ AE+ID ++
Sbjct: 2 KTKKRPEVIERIKVARGFGDLSENSEYEAAKDEQSTLENRIVTIQTMLRYAEIIDAKAVA 61
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
+ ++ G V+ E GD++ Y+IVG EAD +G +S SPIA+ LIG+++GD +++N
Sbjct: 62 KNEVSIGKKVTFEE--DGDEETYEIVGAAEADAFNGKISNESPIAQGLIGRKVGDQVTIN 119
Query: 143 APGGEKTYEILQV 155
PGGE T +I +V
Sbjct: 120 TPGGEMTVKITKV 132
>gi|23099457|ref|NP_692923.1| transcriptional elongation factor [Oceanobacillus iheyensis HTE831]
gi|38372370|sp|Q8EPT6|GREA_OCEIH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|22777686|dbj|BAC13958.1| transcriptional elongation factor [Oceanobacillus iheyensis HTE831]
Length = 158
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 92/141 (65%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G DK+++EL + + + R +++ I AR +GDLSEN+EY AAK+ Q E R+ ++
Sbjct: 9 MTQEGKDKLEEELHYLKTDRRQEVVERIKVARDFGDLSENSEYDAAKDEQAFVEQRITQV 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A +I+ + + ++ G +VS VE GD++ Y IVG EAD G +S SP+
Sbjct: 69 EKMIRNAVIIENDNDNPNIVSLGKSVSFVELPDGDEETYTIVGSAEADPFEGKISNDSPM 128
Query: 127 ARALIGKELGDIISVNAPGGE 147
A +L+GKE+G+ ++V PGG+
Sbjct: 129 ATSLLGKEIGEEVTVTTPGGD 149
>gi|319900857|ref|YP_004160585.1| transcription elongation factor GreA [Bacteroides helcogenes P
36-108]
gi|319415888|gb|ADV42999.1| transcription elongation factor GreA [Bacteroides helcogenes P
36-108]
Length = 151
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 94/151 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ L
Sbjct: 1 MSEEGYKKLMAELKQLETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINNL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A++ID S +S D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 61 KLTIADAKIIDESKLSTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GD+ + P G E++ + +
Sbjct: 121 AQGLLGKKVGDVAEIKVPQGMIHLEVMNISF 151
>gi|222152570|ref|YP_002561745.1| transcription elongation factor GreA [Streptococcus uberis 0140J]
gi|254799570|sp|B9DTR1|GREA_STRU0 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|222113381|emb|CAR41021.1| transcription elongation factor [Streptococcus uberis 0140J]
Length = 160
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 82/129 (63%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETQIRFAEIIDSDAVAKDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GDI + +P
Sbjct: 88 AIGKTVVVQEVGTTDKDTYHIVGSAGADIFSGKISNESPIAQALIGKKKGDIADIVSPAT 147
Query: 147 EKTYEILQV 155
EI+ V
Sbjct: 148 TYQVEIISV 156
>gi|146299350|ref|YP_001193941.1| transcription elongation factor GreA [Flavobacterium johnsoniae
UW101]
gi|189042241|sp|A5FJJ8|GREA_FLAJO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|146153768|gb|ABQ04622.1| transcription elongation factor GreA [Flavobacterium johnsoniae
UW101]
Length = 158
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 93/148 (62%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T+ G K++ EL + RP+ + I++AR GDLSENAEY AAKE Q L E R+A+LE
Sbjct: 8 TADGLKKLKDELEHLKSVMRPKASQDIADARDKGDLSENAEYDAAKEAQGLLEMRIAKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ A +ID S + ++ + V + +++G + Y +V + EAD+++G +S++SPI
Sbjct: 68 EVYANARLIDESQLDVSKVLVLSNVKIKNQSNGMEMKYTLVAESEADLKTGKISVTSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK +G+I + P G +EIL++
Sbjct: 128 KGLLGKSVGEIAEITVPNGTLKFEILEI 155
>gi|227890813|ref|ZP_04008618.1| transcription elongation factor [Lactobacillus salivarius ATCC
11741]
gi|301301189|ref|ZP_07207345.1| transcription elongation factor GreA [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|227867222|gb|EEJ74643.1| transcription elongation factor [Lactobacillus salivarius ATCC
11741]
gi|300851188|gb|EFK78916.1| transcription elongation factor GreA [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 156
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q E R+
Sbjct: 6 FPMTLEGKEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFMEARIK 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
E++N++ AE+ID ++ + +A G TV+ E + + + YQIVG EAD G +S S
Sbjct: 66 EIQNMLNHAEIIDNKSIDENEVAVGKTVTFQEDDD-EPETYQIVGAAEADPFEGKISNES 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA LIG +LGD++S++ PGG +I+ V
Sbjct: 125 PIASGLIGHKLGDVVSIDTPGGTMQVKIIDV 155
>gi|331268357|ref|YP_004394849.1| transcription elongation factor GreA [Clostridium botulinum
BKT015925]
gi|329124907|gb|AEB74852.1| transcription elongation factor GreA [Clostridium botulinum
BKT015925]
Length = 151
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 93/149 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K++ EL + + +R I + I A +YGDLSEN+EY AK Q EGR+ ++
Sbjct: 1 MTAEGVKKLEDELEYLKTTKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEGRIVQI 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN++ A VID S + D ++ GA V + + + ++ ++ IVG EAD +S SP+
Sbjct: 61 ENMLRNANVIDESEIPKDVVSVGAIVKVKDYDFDEEIDFHIVGSAEADPMENKISNESPV 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ALIGK++GDI++V P G +EIL++
Sbjct: 121 GSALIGKKVGDIVNVPVPDGISKFEILEI 149
>gi|311747366|ref|ZP_07721151.1| transcription elongation factor GreA [Algoriphagus sp. PR1]
gi|126579084|gb|EAZ83248.1| transcription elongation factor GreA [Algoriphagus sp. PR1]
Length = 157
Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 95/150 (63%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G +++ EL+ + + R I K I+EAR GDLSENAEY AAK+ Q E ++A+LE
Sbjct: 8 TEEGLKRLKDELQELKTKGRSDIAKQIAEARDKGDLSENAEYDAAKDAQGHLELKIAKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
++ A V D S M ++ +TV + +G +Y +V ++EAD+++G +S+ SP
Sbjct: 68 AVVGNARVFDNSQMDTSKVGILSTVKIKNVKNGMTVSYTLVSEEEADLKAGKISLGSPFG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ L+GK++G++ +NAP G +EIL++ +
Sbjct: 128 KGLVGKKVGEVAEINAPAGALQFEILEISY 157
>gi|313677277|ref|YP_004055273.1| transcription elongation factor grea [Marivirga tractuosa DSM 4126]
gi|312943975|gb|ADR23165.1| transcription elongation factor GreA [Marivirga tractuosa DSM 4126]
Length = 157
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 92/148 (62%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G K+++EL + ERP+ I+EAR GDLSENAEY AAKE Q L E ++ +LE
Sbjct: 8 TEEGLRKMKEELHHLKTVERPKASADIAEARDKGDLSENAEYDAAKEAQGLLEMKINKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
++ A VI S + ++ + K +G + Y +V ++EA+++ G +SI SPI
Sbjct: 68 TVVANARVIKESDVDTSKVGLLTKAKIKNKKNGMEVTYTMVSEEEANLKEGKISIKSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ ++GK++G+I V+AP G+ +EIL +
Sbjct: 128 KGIMGKKVGEIAEVDAPAGKMEFEILDI 155
>gi|163787161|ref|ZP_02181608.1| putative transcription elongation factor [Flavobacteriales
bacterium ALC-1]
gi|159877049|gb|EDP71106.1| putative transcription elongation factor [Flavobacteriales
bacterium ALC-1]
Length = 157
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 94/148 (63%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T++G K+++EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E +++++E
Sbjct: 8 TAEGLKKLREELSQLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLEMKISKME 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ A VID S + ++ + V + + +G + Y +V + EAD+ SG +S++SPI
Sbjct: 68 ETLAGARVIDESQLDTSKVLALSIVKIKNQMNGMEMTYTLVAESEADLASGKISVNSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK +GD + P G ++IL++
Sbjct: 128 KGLLGKSVGDTAEIQVPNGTMKFDILEI 155
>gi|224537713|ref|ZP_03678252.1| hypothetical protein BACCELL_02595 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520636|gb|EEF89741.1| hypothetical protein BACCELL_02595 [Bacteroides cellulosilyticus
DSM 14838]
Length = 154
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 95/151 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ +L
Sbjct: 4 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINKL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ II A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 64 KTIIADAKIIDESKLKTDSVQILNKVELKNIKNGMKMIYTIVSESEANLKEGKISVNTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GD+ + P G E++ + +
Sbjct: 124 AQGLLGKKVGDVAEIKVPQGMVNLEVVNISF 154
>gi|160883671|ref|ZP_02064674.1| hypothetical protein BACOVA_01643 [Bacteroides ovatus ATCC 8483]
gi|260175216|ref|ZP_05761628.1| transcription elongation factor greA [Bacteroides sp. D2]
gi|293373408|ref|ZP_06619763.1| putative transcription elongation factor GreA [Bacteroides ovatus
SD CMC 3f]
gi|315923447|ref|ZP_07919687.1| transcription elongation factor greA [Bacteroides sp. D2]
gi|156111084|gb|EDO12829.1| hypothetical protein BACOVA_01643 [Bacteroides ovatus ATCC 8483]
gi|292631546|gb|EFF50169.1| putative transcription elongation factor GreA [Bacteroides ovatus
SD CMC 3f]
gi|313697322|gb|EFS34157.1| transcription elongation factor greA [Bacteroides sp. D2]
Length = 176
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 94/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +L
Sbjct: 26 MSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINKL 85
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 86 KATIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMIYTIVSESEANLKEGKISVNTPI 145
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++GD+ + P G+ E++ +
Sbjct: 146 AQGLLGKKVGDVAEITVPQGKIALEVVNI 174
>gi|126663046|ref|ZP_01734044.1| transcription elongation factor [Flavobacteria bacterium BAL38]
gi|126624704|gb|EAZ95394.1| transcription elongation factor [Flavobacteria bacterium BAL38]
Length = 158
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 96/148 (64%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E R++++E
Sbjct: 8 TAEGLKKLRDELDQLKSIERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLEMRISKME 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
++ A +ID S + + +TV + + +G + Y +V + EAD+++G +S++SPI
Sbjct: 68 EVVANARLIDESQLDLSKALVLSTVKIKNQANGMEMKYTLVAESEADLKTGKISVTSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK +G++ + P G +++L++
Sbjct: 128 KGLLGKSVGEVAEIIVPNGVLKFDVLEI 155
>gi|284035974|ref|YP_003385904.1| transcription elongation factor GreA [Spirosoma linguale DSM 74]
gi|283815267|gb|ADB37105.1| transcription elongation factor GreA [Spirosoma linguale DSM 74]
Length = 157
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 97/148 (65%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G ++++ EL + + R I + I+EAR GDLSENAEY AAK+ Q L+E ++++LE
Sbjct: 8 TEEGLNRLKAELVELKTKGRAAIARQIAEARDKGDLSENAEYDAAKDAQGLHELKISKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+++ A V+D ST+ +++ + V + K SG + Y +V ++EAD+++G +S+ SPI
Sbjct: 68 EVLSNARVLDESTIDASQVSVLSKVKIKNKKSGAEMLYILVSEEEADLKTGRISVGSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK +GD + P G +E++++
Sbjct: 128 KGLLGKRVGDTAEIKVPAGVLEFEVMEI 155
>gi|189465343|ref|ZP_03014128.1| hypothetical protein BACINT_01691 [Bacteroides intestinalis DSM
17393]
gi|189437617|gb|EDV06602.1| hypothetical protein BACINT_01691 [Bacteroides intestinalis DSM
17393]
Length = 154
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 92/147 (62%)
Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ +L+ II
Sbjct: 8 GYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINKLKTII 67
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
A++ID S + D + V L +G K Y IV + EA+++ G +S+++PIA+ L
Sbjct: 68 ADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPIAQGL 127
Query: 131 IGKELGDIISVNAPGGEKTYEILQVLW 157
+GK++G++ + P G E++ + +
Sbjct: 128 LGKKVGEVAEIKVPQGMVNLEVMNISF 154
>gi|90961794|ref|YP_535710.1| transcription elongation factor [Lactobacillus salivarius UCC118]
gi|90820988|gb|ABD99627.1| Transcription elongation factor [Lactobacillus salivarius UCC118]
Length = 156
Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 63/151 (41%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q E R+
Sbjct: 6 FPMTLEGKEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFMEARIK 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
E++N++ AE+ID ++ + +A G TV+ E + + + YQIVG EAD G +S S
Sbjct: 66 EIQNMLNHAEIIDNKSIDENEVAVGKTVTFQEDDD-EPETYQIVGAAEADPFEGKISNES 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA LIG +LGD++S++ PGG +I+ V
Sbjct: 125 PIASGLIGHKLGDVVSIDTPGGTMRVKIIDV 155
>gi|296875962|ref|ZP_06900021.1| transcription elongation factor GreA [Streptococcus parasanguinis
ATCC 15912]
gi|296433037|gb|EFH18825.1| transcription elongation factor GreA [Streptococcus parasanguinis
ATCC 15912]
Length = 160
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE++D ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVDSDAVAVDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E D++ Y IVG AD +G +S SPI ALIGK+ GD+++V P G
Sbjct: 88 AIGKTVTVQEVGETDEEVYSIVGSAGADAFAGKISNESPIGHALIGKKTGDVVTVETPAG 147
Query: 147 EKTYEILQV 155
+IL V
Sbjct: 148 SYQVKILNV 156
>gi|312868364|ref|ZP_07728564.1| transcription elongation factor GreA [Streptococcus parasanguinis
F0405]
gi|322390081|ref|ZP_08063616.1| transcription elongation factor GreA [Streptococcus parasanguinis
ATCC 903]
gi|311096109|gb|EFQ54353.1| transcription elongation factor GreA [Streptococcus parasanguinis
F0405]
gi|321143208|gb|EFX38651.1| transcription elongation factor GreA [Streptococcus parasanguinis
ATCC 903]
Length = 160
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE++D ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVDSDAVAVDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E D++ Y IVG AD +G +S SPI ALIGK+ GD+++V P G
Sbjct: 88 AIGKTVTVQEVGETDEEVYSIVGSAGADAFAGKISNESPIGHALIGKKTGDVVTVETPAG 147
Query: 147 EKTYEILQV 155
+IL V
Sbjct: 148 SYQVKILNV 156
>gi|118444643|ref|YP_877135.1| transcription elongation factor GreA [Clostridium novyi NT]
gi|166200657|sp|A0PXN3|GREA_CLONN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|118135099|gb|ABK62143.1| transcription elongation factor greA [Clostridium novyi NT]
Length = 159
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 94/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K+++EL + + +R I + I A +YGDLSEN+EY AK Q EGR+ +L
Sbjct: 9 MTAEGVKKLEEELEYLKTVKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEGRIVQL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN++ A V+D S +S D ++ G+ V + + + + ++ IVG EAD +S SP+
Sbjct: 69 ENMLRNANVVDESEISLDAVSVGSIVKVKDYDFDEIIDFHIVGSAEADPMENKISNESPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ALIGK++GD+I+V P G +EIL++
Sbjct: 129 GSALIGKKVGDVINVPVPDGISKFEILEI 157
>gi|332652694|ref|ZP_08418439.1| transcription elongation factor GreA [Ruminococcaceae bacterium
D16]
gi|332517840|gb|EGJ47443.1| transcription elongation factor GreA [Ruminococcaceae bacterium
D16]
Length = 157
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 96/155 (61%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T + ++Q EL + + + + I EAR++GDLSEN+EY AK Q
Sbjct: 1 MAKEYKLTPQRLQELQDELVYLKTVREKEVAELIKEARSFGDLSENSEYDEAKTEQGKLY 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E I++ VID S G+ + G+TV++++K ++ Y+IVG QEAD +G++
Sbjct: 61 SRIAEVEEILSNYVVIDESDDGGNYVRIGSTVTVLDKEFDEELVYKIVGSQEADPMNGVI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP RAL+GK +GD + V+AP G Y++L+V
Sbjct: 121 SEDSPFGRALLGKNVGDDVVVDAPAGSVEYKLLKV 155
>gi|227550518|ref|ZP_03980567.1| elongation factor GreA [Enterococcus faecium TX1330]
gi|227180419|gb|EEI61391.1| elongation factor GreA [Enterococcus faecium TX1330]
Length = 198
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 86/130 (66%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
+R II+ I AR +GDLSEN+EY++AK+ Q EGR+ +EN+I A++ID + D
Sbjct: 66 KRGEIIERIKIARGFGDLSENSEYESAKDEQAFVEGRITTIENMIRFAQIIDNDGVDADE 125
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
++ G TV+ +E G+++ Y IVG EAD SG +S SPIA+ALIGK D +++ PG
Sbjct: 126 VSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGKISNDSPIAQALIGKRKNDEVTIATPG 185
Query: 146 GEKTYEILQV 155
G+ +I++V
Sbjct: 186 GDMLVKIVKV 195
>gi|222099868|ref|YP_002534436.1| Transcription elongation factor greA [Thermotoga neapolitana DSM
4359]
gi|254799574|sp|B9K7Y7|GREA_THENN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|221572258|gb|ACM23070.1| Transcription elongation factor greA [Thermotoga neapolitana DSM
4359]
Length = 156
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 102/154 (66%), Gaps = 1/154 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+ +T +G++K++QEL +++ I + I EAR GDLSEN+EY+AAK Q
Sbjct: 1 MKKVRLTREGYEKLKQELEELKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E I++ AE+I+ S GD + G V++ ++G++ ++IV QEAD + +S
Sbjct: 61 RIMEIEQILSNAEIIEDSE-EGDEVTLGKWVTIRNLDTGEEHKFRIVTPQEADFFAQKLS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ ++L+G+++GDI+ V APGG + Y++++V
Sbjct: 120 ADSPLGKSLLGRKVGDIVKVKAPGGVQRYQVVEV 153
>gi|313906158|ref|ZP_07839506.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6]
gi|313468997|gb|EFR64351.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6]
Length = 161
Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 90/150 (60%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G ++ EL Q +R I + + EARA GDLSENAEY AAK+ Q E R+
Sbjct: 6 KTIMTYAGLKALESELEDLQVNKRKEIAEKLKEARAQGDLSENAEYDAAKDEQAQIEARI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+ENI+ A+V+ + + G + +++K ++ +QIVG EA+ G +S
Sbjct: 66 EEIENILKNADVVVEEEADSNTVNVGCKIKVLDKTYDEELEFQIVGSTEANSLKGKISNE 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153
SP+ RAL+G E+GD++++ P G++ YEIL
Sbjct: 126 SPVGRALLGHEIGDVVTIETPAGDEQYEIL 155
>gi|69248024|ref|ZP_00604587.1| Prokaryotic transcription elongation factor GreA [Enterococcus
faecium DO]
gi|257880194|ref|ZP_05659847.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,230,933]
gi|257882995|ref|ZP_05662648.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,502]
gi|257888545|ref|ZP_05668198.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,141,733]
gi|257891422|ref|ZP_05671075.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,410]
gi|257897080|ref|ZP_05676733.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium Com12]
gi|257899019|ref|ZP_05678672.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium Com15]
gi|293377303|ref|ZP_06623507.1| transcription elongation factor GreA [Enterococcus faecium PC4.1]
gi|294622139|ref|ZP_06701215.1| transcription elongation factor GreA [Enterococcus faecium U0317]
gi|68194592|gb|EAN09082.1| Prokaryotic transcription elongation factor GreA [Enterococcus
faecium DO]
gi|257814422|gb|EEV43180.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,230,933]
gi|257818653|gb|EEV45981.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,502]
gi|257824599|gb|EEV51531.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,141,733]
gi|257827782|gb|EEV54408.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,410]
gi|257833645|gb|EEV60066.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium Com12]
gi|257836931|gb|EEV62005.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium Com15]
gi|291598340|gb|EFF29427.1| transcription elongation factor GreA [Enterococcus faecium U0317]
gi|292643995|gb|EFF62101.1| transcription elongation factor GreA [Enterococcus faecium PC4.1]
Length = 159
Score = 110 bits (274), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +EN+I A++ID + D ++ G TV+ +E G+++ Y IVG EAD SG
Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+ALIGK D +++ PGG+ +I++V
Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKV 156
>gi|293572488|ref|ZP_06683467.1| transcription elongation factor GreA [Enterococcus faecium E980]
gi|291607405|gb|EFF36748.1| transcription elongation factor GreA [Enterococcus faecium E980]
Length = 159
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/156 (42%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +EN+I A++ID + D ++ G TV+ +E G+++ Y IVG EAD SG
Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+ALIGK D +++ PGG+ +I++V
Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIVTPGGDMLVKIVKV 156
>gi|254449181|ref|ZP_05062631.1| transcription elongation factor GreB [gamma proteobacterium
HTCC5015]
gi|198261227|gb|EDY85522.1| transcription elongation factor GreB [gamma proteobacterium
HTCC5015]
Length = 158
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 91/151 (60%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GFD++++EL + +EERPR+ +A+SEA A GD SENAEY K+ + R+ L
Sbjct: 8 ITREGFDRLEKELNFLWKEERPRVTQAVSEAAALGDRSENAEYIYGKKRLREIDRRVRFL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ S ++ FGA V L + +SG+ Y+IVG E D + G +S+ SP+
Sbjct: 68 SKRLDELQVVYPSPQQAGKVFFGAWVELEDGDSGEVVKYRIVGPDEFDPEVGAISVDSPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+GK L + V P G + + +L V +
Sbjct: 128 ARALLGKALNQTVRVETPKGSRHFIVLDVSY 158
>gi|261885949|ref|ZP_06009988.1| transcription elongation factor GreA [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 139
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 88/123 (71%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++K+ EL+ + +RP I++ I AR++GDL ENAEY AA+E Q E R+AE
Sbjct: 4 PMTLYGYEKLSSELKDLKLVQRPAIVEEIDIARSHGDLKENAEYHAAREKQAFIENRIAE 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +I++RA+VI+ S DR+ FG+T+++++ ++ + Y IVG E++++ GL+SI++P
Sbjct: 64 LSDILSRAKVINPSEYEHDRVKFGSTITIMDVDTELETTYTIVGISESNLERGLISINTP 123
Query: 126 IAR 128
+A+
Sbjct: 124 LAK 126
>gi|168187057|ref|ZP_02621692.1| transcription elongation factor GreA [Clostridium botulinum C str.
Eklund]
gi|169295044|gb|EDS77177.1| transcription elongation factor GreA [Clostridium botulinum C str.
Eklund]
Length = 159
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 93/149 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K+++EL + + +R I + I A +YGDLSEN+EY AK Q EGR+ +L
Sbjct: 9 MTAEGVKKLEEELEYLKTVKRREITEKIKVALSYGDLSENSEYDEAKNEQAFAEGRIVQL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN++ A V+D S +S D ++ G+ V + + + ++ IVG EAD +S SP+
Sbjct: 69 ENMLRNANVVDESEISLDTVSVGSIVKVKDYEFDEIIDFHIVGSAEADPMENKISNESPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ALIGK++GD+++V P G +EIL++
Sbjct: 129 GSALIGKKVGDVVNVPVPDGISKFEILEI 157
>gi|225873815|ref|YP_002755274.1| transcription elongation factor GreA [Acidobacterium capsulatum
ATCC 51196]
gi|225793182|gb|ACO33272.1| transcription elongation factor GreA [Acidobacterium capsulatum
ATCC 51196]
Length = 165
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 90/145 (62%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
K+ ++++ + E + I +A A GDLSENAEY AK+ Q R+ +L+ +
Sbjct: 8 KLLEDIKQLEHELAHELPAEIKKAAALGDLSENAEYHMAKQRQEFVNARLGQLKKRMAEL 67
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+++++ + DR+AFG+TV + + + +K Y++V +E+DV GL+S +SPI RALIGK
Sbjct: 68 SLVNLANIPHDRVAFGSTVEVFDTSKDEKIEYKLVTSEESDVSKGLISTTSPIGRALIGK 127
Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158
++GD +V P G + E+L++ I
Sbjct: 128 QVGDTATVVTPSGNRELEVLKLTTI 152
>gi|258592300|emb|CBE68609.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [NC10 bacterium 'Dutch sediment']
Length = 166
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/144 (38%), Positives = 87/144 (60%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
D ++QE +E R + K I AR GDL EN EY+ K+ Q + RMA L+ I
Sbjct: 7 LDDLRQEFNKLDREFRQDLPKKIQAARELGDLRENGEYETIKDRQGFVKARMAFLQQRIA 66
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
ID+ + DR+A G+TV L++++SG++ Y +V + D G +S++SPI R+LI
Sbjct: 67 EISKIDLRQIPKDRVALGSTVHLIDEDSGEETVYTLVFPELMDSARGWISVASPIGRSLI 126
Query: 132 GKELGDIISVNAPGGEKTYEILQV 155
GK+ GD + +N PGG K +E++++
Sbjct: 127 GKQAGDRVVMNTPGGTKAFEMMKL 150
>gi|229918442|ref|YP_002887088.1| transcription elongation factor GreA [Exiguobacterium sp. AT1b]
gi|229469871|gb|ACQ71643.1| transcription elongation factor GreA [Exiguobacterium sp. AT1b]
Length = 157
Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 90/149 (60%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G KI+ EL + R +++ I AR +GDLSENAEY AAKE Q + EGR+A+L
Sbjct: 8 MTLDGKAKIEHELNELKTVRRKEVVENIKIARDFGDLSENAEYDAAKEEQAMVEGRIAQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A +I ++ G TV+ + + + Y IVG EAD +G +S SPI
Sbjct: 68 EEMLRNAVIIQDDAGDNSVVSIGKTVTFFIQEDNEDETYTIVGGAEADPFTGKISNESPI 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+AL+G+ +GD+++V PGG+ EI ++
Sbjct: 128 AKALLGRTIGDVVTVQTPGGDMVVEIKEI 156
>gi|261409956|ref|YP_003246197.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10]
gi|261286419|gb|ACX68390.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10]
Length = 158
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 93/155 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++ +T +G+DK+Q+EL + +R + + I A +YGDL EN+EY +AK Q E
Sbjct: 1 MAEELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFME 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE + A ++D +S + G+ V L + G+K YQ+VG EADV + V
Sbjct: 61 TRIIILEKTLNSARIVDAKDVSSTTVNVGSNVVLNDIEFGEKLEYQVVGPAEADVSNNKV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+GK +GD + V AP G YE+L++
Sbjct: 121 SYESPLGKALMGKAVGDQVHVEAPMGIVKYELLEI 155
>gi|15896445|ref|NP_349794.1| transcription elongation factor GreA [Clostridium acetobutylicum
ATCC 824]
gi|25453001|sp|Q97EB6|GREA_CLOAB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|15026268|gb|AAK81134.1|AE007815_4 Transcription elongation factor, greA [Clostridium acetobutylicum
ATCC 824]
gi|325510603|gb|ADZ22239.1| transcription elongation factor GreA [Clostridium acetobutylicum EA
2018]
Length = 158
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 91/152 (59%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T KG K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR+
Sbjct: 6 KYVITYKGVKKLEEELEYLKTTKRKEITEKIKVALSFGDLSENSEYDEAKNDQAFVEGRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A++EN++ A VID S + D ++ G+ V + + ++ + IVG EAD +S
Sbjct: 66 AQIENMLKNANVIDESELKNDVVSVGSKVMVKDYQFDEEIEFSIVGSAEADPIENKISNE 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ ALIGK++GD I VN P G Y+IL +
Sbjct: 126 SPVGSALIGKKVGDEIEVNVPDGVDKYKILAI 157
>gi|262189677|ref|ZP_06048051.1| transcription elongation factor GreA [Vibrio cholerae CT 5369-93]
gi|262034443|gb|EEY52809.1| transcription elongation factor GreA [Vibrio cholerae CT 5369-93]
Length = 144
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 95/126 (75%), Gaps = 2/126 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M + ++ FGATV++++ NS ++K YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGRI 119
Query: 121 SISSPI 126
S++SP+
Sbjct: 120 SVNSPM 125
>gi|312131392|ref|YP_003998732.1| transcription elongation factor grea [Leadbetterella byssophila DSM
17132]
gi|311907938|gb|ADQ18379.1| transcription elongation factor GreA [Leadbetterella byssophila DSM
17132]
Length = 156
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 94/148 (63%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G+D ++ +L + + R + KA++EA+ GDLSENAEY AAK+ Q L E +A+LE
Sbjct: 7 TQEGYDNLKNKLNDLKTKGRREVSKALAEAKDKGDLSENAEYDAAKDAQALLETEIAKLE 66
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ +A ++D +T+ +++ TV + + Y +V ++EAD++ G +SI+SP A
Sbjct: 67 ELFAKARILDENTIDTSKVSLMTTVKIKNLKNKATMKYTLVAEEEADLKQGKISINSPFA 126
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK++GD + APGG EIL++
Sbjct: 127 KGLLGKKVGDKADIQAPGGVVEVEILEI 154
>gi|312866104|ref|ZP_07726325.1| transcription elongation factor GreA [Streptococcus downei F0415]
gi|311098508|gb|EFQ56731.1| transcription elongation factor GreA [Streptococcus downei F0415]
Length = 160
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/129 (45%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +I+ I AR+YGDLSEN+EY AAK+ Q EG++ +E I AE+ID ++ D +
Sbjct: 28 RPEVIERIKIARSYGDLSENSEYDAAKDEQAFVEGQIQIIETKIRYAEIIDSDAVASDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV + E + D+ Y IVG ADV +G +S SPIA+ALIGK++GD ++ +P G
Sbjct: 88 AIGKTVVVQEVGTKDQDTYSIVGAAGADVFAGKISNESPIAQALIGKKVGDKTTIESPAG 147
Query: 147 EKTYEILQV 155
EI+ V
Sbjct: 148 SYDVEIVSV 156
>gi|18311448|ref|NP_563382.1| transcription elongation factor GreA [Clostridium perfringens str.
13]
gi|110799156|ref|YP_697154.1| transcription elongation factor GreA [Clostridium perfringens ATCC
13124]
gi|110802874|ref|YP_699722.1| transcription elongation factor GreA [Clostridium perfringens
SM101]
gi|168206861|ref|ZP_02632866.1| transcription elongation factor GreA [Clostridium perfringens E
str. JGS1987]
gi|168211212|ref|ZP_02636837.1| transcription elongation factor GreA [Clostridium perfringens B
str. ATCC 3626]
gi|168215146|ref|ZP_02640771.1| transcription elongation factor GreA [Clostridium perfringens CPE
str. F4969]
gi|168218226|ref|ZP_02643851.1| transcription elongation factor GreA [Clostridium perfringens NCTC
8239]
gi|169343179|ref|ZP_02864200.1| transcription elongation factor GreA [Clostridium perfringens C
str. JGS1495]
gi|182625990|ref|ZP_02953753.1| transcription elongation factor GreA [Clostridium perfringens D
str. JGS1721]
gi|25452992|sp|Q8XHL7|GREA_CLOPE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|122956482|sp|Q0SQ85|GREA_CLOPS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|122958663|sp|Q0TMI6|GREA_CLOP1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|18146132|dbj|BAB82172.1| transcriptional elongation factor [Clostridium perfringens str. 13]
gi|110673803|gb|ABG82790.1| transcription elongation factor GreA [Clostridium perfringens ATCC
13124]
gi|110683375|gb|ABG86745.1| transcription elongation factor GreA [Clostridium perfringens
SM101]
gi|169298731|gb|EDS80807.1| transcription elongation factor GreA [Clostridium perfringens C
str. JGS1495]
gi|170661751|gb|EDT14434.1| transcription elongation factor GreA [Clostridium perfringens E
str. JGS1987]
gi|170710773|gb|EDT22955.1| transcription elongation factor GreA [Clostridium perfringens B
str. ATCC 3626]
gi|170713439|gb|EDT25621.1| transcription elongation factor GreA [Clostridium perfringens CPE
str. F4969]
gi|177908697|gb|EDT71208.1| transcription elongation factor GreA [Clostridium perfringens D
str. JGS1721]
gi|182379757|gb|EDT77236.1| transcription elongation factor GreA [Clostridium perfringens NCTC
8239]
Length = 158
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 90/149 (60%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EGR+ +L
Sbjct: 8 MTYEGVKKLEDELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNEQAFTEGRIIQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN++ A V+D S +S D + G+ V +++ + ++ Y IVG EAD + +S SP+
Sbjct: 68 ENMLKNAVVVDESEISTDIVTVGSIVKVMDFDFDEEVEYSIVGSAEADPMNFKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
L+GK++GD++ + PGG +E+L +
Sbjct: 128 GEGLMGKKVGDVVEIEVPGGTTKFEVLGI 156
>gi|327439572|dbj|BAK15937.1| transcription elongation factor [Solibacillus silvestris StLB046]
Length = 161
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 93/154 (60%), Gaps = 5/154 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G K++ EL + +RP +++ I AR++GDLSEN+EY +AKE Q EGR++
Sbjct: 8 PMTLDGKQKLEDELNTLKTVKRPEVVERIKVARSFGDLSENSEYDSAKEEQGFVEGRISL 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN----YQIVGDQEADVQSGLVS 121
+E ++ R VI + + I+ G TV+ E +G + N Y IVG EAD G +S
Sbjct: 68 IEQML-RNAVIITEDETSNTISLGKTVTFDELINGKRANFEESYTIVGSAEADPMEGKIS 126
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPIA+AL+GK + D++ + PGGE IL+V
Sbjct: 127 NDSPIAKALMGKHVDDVVKLTTPGGEMEVIILEV 160
>gi|26513900|gb|AAN78348.1| transcription elongation factor GreA [Listonella anguillarum]
Length = 127
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 93/128 (72%), Gaps = 2/128 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +++EL R + RP+I +AI+ AR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGEQFVREELD-RLLKLRPQITQAIATARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VIDI+ M ++ FG+TV+L++ ++ + K YQIVG+ EA+++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDITKMENTGKVIFGSTVTLIDSDTDEVKRYQIVGEDEAEIKSGRI 119
Query: 121 SISSPIAR 128
S+SSPIAR
Sbjct: 120 SVSSPIAR 127
>gi|253681347|ref|ZP_04862145.1| transcription elongation factor GreA [Clostridium botulinum D str.
1873]
gi|253562585|gb|EES92036.1| transcription elongation factor GreA [Clostridium botulinum D str.
1873]
Length = 159
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 92/149 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K++ EL + + +R I + I A +YGDLSEN+EY AK Q EGR+ ++
Sbjct: 9 MTAEGVKKLEDELEYLKTTKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEGRIVQI 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN++ A V+D S + D ++ G+ V + + + ++ ++ IVG EAD +S SP+
Sbjct: 69 ENMLRNANVVDESEIPKDVVSVGSIVKVKDYDFDEEIDFHIVGSAEADPMENKISNESPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ALIGK++GDI+ V P G +EIL++
Sbjct: 129 GSALIGKKVGDIVDVPVPDGISKFEILEI 157
>gi|261414657|ref|YP_003248340.1| transcription elongation factor GreA [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261371113|gb|ACX73858.1| transcription elongation factor GreA [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 151
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 95/150 (63%), Gaps = 6/150 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKE-LQNLNEGRMAE 65
T + +DK+ ++L + ERPR+++ + +ARA GDLSENAEY AAKE L +++ M +
Sbjct: 2 FTQEAYDKLVKDLENLKNVERPRVLQELVDARAQGDLSENAEYHAAKERLASIDNIEMPK 61
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN--YQIVGDQEADVQSGLVSIS 123
L++ + RA+VI S D I FGAT++ KN K+ YQ+V +EAD +G +S
Sbjct: 62 LQDQLARAQVIAFDANS-DTIKFGATIT--AKNLKTKREIVYQLVSPEEADALNGKISFK 118
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153
SPI AL+GK+ GD + V P G+ +EI+
Sbjct: 119 SPIGAALMGKKRGDTVEVVTPKGKNQFEII 148
>gi|28378269|ref|NP_785161.1| transcription elongation factor GreA [Lactobacillus plantarum
WCFS1]
gi|254556476|ref|YP_003062893.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1]
gi|300767199|ref|ZP_07077111.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308180418|ref|YP_003924546.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|38257515|sp|Q88WQ9|GREA2_LACPL RecName: Full=Transcription elongation factor greA 2; AltName:
Full=Transcript cleavage factor greA 2
gi|28271104|emb|CAD64009.1| transcription elongation factor GreA [Lactobacillus plantarum
WCFS1]
gi|254045403|gb|ACT62196.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1]
gi|300495018|gb|EFK30174.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308045909|gb|ADN98452.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 160
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 93/150 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K+++EL + +RP II I AR+YGDLSEN+EY++AK Q+L E R+
Sbjct: 8 PMTEEGKVKLEKELEDLRINQRPEIINRIKIARSYGDLSENSEYESAKNEQSLLENRIKT 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E+++ AE+ID + ++ G V+ E + ++Y IVG EAD G +S SP
Sbjct: 68 VEHMLQYAEIIDSDKIDETEVSVGKIVTFKELPDEEPESYTIVGAAEADPMVGKISNDSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA+ LIG + + +++N P G T +IL+V
Sbjct: 128 IAKGLIGHHVDEEVAINIPAGTMTVKILKV 157
>gi|317495734|ref|ZP_07954099.1| transcription elongation factor GreA [Gemella moribillum M424]
gi|316914187|gb|EFV35668.1| transcription elongation factor GreA [Gemella moribillum M424]
Length = 162
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 97/152 (63%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK+ +EL ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+ E+
Sbjct: 11 MTQEGYDKLVEELEHYKKVKRPEVIEKIKVARSFGDLSENSEYDAAKDEQGFIEQRILEM 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A +I++ S I G TV+ E +G + Y+IVG EA+ +S SP+
Sbjct: 71 EQMIRYAVIIELDEKSS-AIRLGNTVTYQELPNGATETYKIVGSAEANPFEFKISNDSPV 129
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
A+AL+GKE+GD++ V+ P G + ++VL +
Sbjct: 130 AQALLGKEVGDVVKVSLPTGPEDSMDIKVLEV 161
>gi|323340754|ref|ZP_08081006.1| transcription elongation factor GreA [Lactobacillus ruminis ATCC
25644]
gi|323091877|gb|EFZ34497.1| transcription elongation factor GreA [Lactobacillus ruminis ATCC
25644]
Length = 157
Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 88/129 (68%), Gaps = 1/129 (0%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
R II+ I AR++GDLSEN+EY+AAK Q++ EGR+ E+ N++ AE+ID ++ D +
Sbjct: 29 RAEIIERIKIARSFGDLSENSEYEAAKNEQSILEGRIKEVTNMLNHAEIIDNGAIAEDEV 88
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV+ E++ + + YQIVG E+D +G +S SPIA+ L+G ++G+ ++V PGG
Sbjct: 89 AIGKTVTFQEEDD-EPETYQIVGAAESDPFNGKISNESPIAKGLVGHKVGETVTVETPGG 147
Query: 147 EKTYEILQV 155
+ +I+ V
Sbjct: 148 DMQVKIISV 156
>gi|24380100|ref|NP_722055.1| transcription elongation factor GreA [Streptococcus mutans UA159]
gi|290579921|ref|YP_003484313.1| putative transcription elongation factor [Streptococcus mutans
NN2025]
gi|81450943|sp|Q8DSP7|GREA_STRMU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|24378096|gb|AAN59361.1|AE015001_6 putative transcription elongation factor GreA [Streptococcus mutans
UA159]
gi|254996820|dbj|BAH87421.1| putative transcription elongation factor [Streptococcus mutans
NN2025]
Length = 160
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 85/129 (65%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +I+ I AR+YGDLSEN+EY+AAK+ Q EG+++ +E I AE++D ++ + +
Sbjct: 28 RPEVIERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSIETKIRYAEIVDSDAVAKNEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV + E + D+ Y IVG ADV +G +S SPIA+ALIGK+ GD + + +P G
Sbjct: 88 AIGKTVIVREVGTNDEDTYSIVGAAGADVFAGKISNESPIAQALIGKKTGDKVMIESPAG 147
Query: 147 EKTYEILQV 155
EI++V
Sbjct: 148 SYQVEIVKV 156
>gi|270290410|ref|ZP_06196635.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4]
gi|270281191|gb|EFA27024.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4]
Length = 161
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 99/152 (65%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T G K+++EL + E RP++I+ I AR++GDLSEN+EY++AK+ Q++ E R+
Sbjct: 6 RYPMTLDGKQKLEEELETLKTETRPQVIEQIKIARSFGDLSENSEYESAKDEQSMVESRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+E+++ AE+ID + + ++ G V E + + Y IVG EAD SG +S
Sbjct: 66 NTIEHMLHYAEIIDDEAIDSNEVSLGRVVEFQELPDEEPEEYTIVGAAEADPMSGKISND 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPIA+ L+GK++GD++++ PGG+ +IL V
Sbjct: 126 SPIAKGLLGKKVGDVVTIATPGGDMKVKILTV 157
>gi|160887890|ref|ZP_02068893.1| hypothetical protein BACUNI_00293 [Bacteroides uniformis ATCC 8492]
gi|270294851|ref|ZP_06201052.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317477839|ref|ZP_07937025.1| transcription elongation factor GreA [Bacteroides sp. 4_1_36]
gi|156862576|gb|EDO56007.1| hypothetical protein BACUNI_00293 [Bacteroides uniformis ATCC 8492]
gi|270274098|gb|EFA19959.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316905975|gb|EFV27743.1| transcription elongation factor GreA [Bacteroides sp. 4_1_36]
Length = 154
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 90/147 (61%)
Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ L+ I
Sbjct: 8 GYKKLMAELKHLETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINNLKLTI 67
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
A++ID S + D + V L +G K Y IV + EA+++ G +S+++PIA+ L
Sbjct: 68 ADAKIIDESKLKTDSVQILNKVELKNVKNGMKMVYTIVSESEANLKEGKISVNTPIAQGL 127
Query: 131 IGKELGDIISVNAPGGEKTYEILQVLW 157
+GK++GDI + P G E++ + +
Sbjct: 128 LGKKVGDIAEIKVPQGMINLEVVNISF 154
>gi|332975157|gb|EGK12059.1| transcription elongation factor GreA [Desmospora sp. 8437]
Length = 158
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/149 (40%), Positives = 89/149 (59%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL + + R + + EA A GDLSENAEY AAKE Q E R+ L
Sbjct: 9 LTEEGLAKVKDELELYRTKRRQDVANRLKEAIAQGDLSENAEYDAAKEEQAFVESRIMTL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN++ A++ID T + + ++ GA V++ E GD++ Y IVG E+D SG +S SPI
Sbjct: 69 ENMVRNAKIIDQDTQNKNFVSVGAKVTIQELPDGDEETYTIVGSAESDPISGKISNESPI 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
LIGK G+ I V AP G ++I+ +
Sbjct: 129 GAELIGKREGETIKVPAPSGTLEFKIISI 157
>gi|304384708|ref|ZP_07367054.1| transcription elongation factor GreA [Pediococcus acidilactici DSM
20284]
gi|304328902|gb|EFL96122.1| transcription elongation factor GreA [Pediococcus acidilactici DSM
20284]
Length = 161
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 99/152 (65%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T G K+++EL + E RP++I+ I AR++GDLSEN+EY++AK+ Q++ E R+
Sbjct: 6 RYPMTLDGKQKLEEELETLKTETRPQVIERIKIARSFGDLSENSEYESAKDEQSMVESRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+E+++ AE+ID + + ++ G V E + + Y IVG EAD SG +S
Sbjct: 66 NTIEHMLHYAEIIDDEAIDSNEVSLGRVVEFQELPDEEPEEYTIVGAAEADPMSGKISND 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPIA+ L+GK++GD++++ PGG+ +IL V
Sbjct: 126 SPIAKGLLGKKVGDVVTIATPGGDMKVKILTV 157
>gi|313890846|ref|ZP_07824470.1| transcription elongation factor GreA [Streptococcus pseudoporcinus
SPIN 20026]
gi|313120744|gb|EFR43859.1| transcription elongation factor GreA [Streptococcus pseudoporcinus
SPIN 20026]
Length = 160
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 2/126 (1%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRFAEIIDSDAVAKDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GD + +P
Sbjct: 88 AIGKTVVVQEVGTNDKDTYHIVGSAGADIFSGKISNESPIAQALIGKKKGDKAQIVSPA- 146
Query: 147 EKTYEI 152
TYE+
Sbjct: 147 -TTYEV 151
>gi|332522954|ref|ZP_08399206.1| transcription elongation factor GreA [Streptococcus porcinus str.
Jelinkova 176]
gi|332314218|gb|EGJ27203.1| transcription elongation factor GreA [Streptococcus porcinus str.
Jelinkova 176]
Length = 160
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 81/126 (64%), Gaps = 2/126 (1%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRFAEIIDSDAVAKDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV + E + DK Y IVG AD+ SG +S SPIA+ALIGK+ GD + +P
Sbjct: 88 AIGKTVVVQEVGTNDKDTYHIVGSAGADIFSGKISNESPIAQALIGKKKGDKAQIVSPA- 146
Query: 147 EKTYEI 152
TYE+
Sbjct: 147 -TTYEV 151
>gi|160944698|ref|ZP_02091925.1| hypothetical protein FAEPRAM212_02212 [Faecalibacterium prausnitzii
M21/2]
gi|158443882|gb|EDP20886.1| hypothetical protein FAEPRAM212_02212 [Faecalibacterium prausnitzii
M21/2]
gi|295104346|emb|CBL01890.1| transcription elongation factor GreA [Faecalibacterium prausnitzii
SL3/3]
Length = 161
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +++ G +Q+EL + + R + + I EAR++GDLSEN+EY AK Q L E
Sbjct: 1 MAQEIKMSAAGLKAMQEELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE I A +ID S +S D ++ G V++ E + + Y IVG EAD +G +
Sbjct: 61 NRITELEQTIKNAVIIDESELSVDNVSVGTHVTIRETGEDEAEEYDIVGRTEADAFNGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
S SP+ AL+GK +GD V P G+ Y +L +
Sbjct: 121 SDESPVGHALMGKAVGDKAEVLLPTGQTVVYTVLAI 156
>gi|329960362|ref|ZP_08298787.1| transcription elongation factor GreA [Bacteroides fluxus YIT 12057]
gi|328532800|gb|EGF59582.1| transcription elongation factor GreA [Bacteroides fluxus YIT 12057]
Length = 154
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 93/151 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ L
Sbjct: 4 MSEEGYKKLMAELKHLETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINNL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A++ID S + D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 64 KLTIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMVYTIVSESEANLKEGKISVNTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GD+ + P G E++ + +
Sbjct: 124 AQGLLGKKVGDVAEIKVPQGVINLEVVNISF 154
>gi|313902255|ref|ZP_07835661.1| transcription elongation factor GreA [Thermaerobacter subterraneus
DSM 13965]
gi|313467485|gb|EFR62993.1| transcription elongation factor GreA [Thermaerobacter subterraneus
DSM 13965]
Length = 159
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 97/155 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ ++++G K+++EL++ + +R + + I +AR +GD+SEN+EY+ AK Q E
Sbjct: 1 MDKELLLSAEGLRKLEEELQYLKSVKRREVAQRIKQAREFGDISENSEYEEAKNEQAFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE ++ A +++ + ++ G+TV L + ++G++ Y IVG EAD + +
Sbjct: 61 GRIIELEKMLRNARIVNDDEIDPTKVNIGSTVYLKDVDTGEEVQYTIVGSNEADPAALRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL G +GD++ V P G YEI+++
Sbjct: 121 SYQSPVGKALFGHSVGDVVEVKVPAGTLRYEIVRI 155
>gi|297584721|ref|YP_003700501.1| transcription elongation factor GreA [Bacillus selenitireducens
MLS10]
gi|297143178|gb|ADH99935.1| transcription elongation factor GreA [Bacillus selenitireducens
MLS10]
Length = 156
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 87/131 (66%), Gaps = 1/131 (0%)
Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
E R +++ I AR++GDLSEN+EY +AKE Q EGR+ +LE +I AE+I+ S
Sbjct: 26 ERRKEVVERIKVARSFGDLSENSEYDSAKEEQAFVEGRIQQLETMIRNAEIIEEDKNSS- 84
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
+++ G V+ VE G+++ Y IVG EAD G +S SP+A++LIGKE+GD ++V+ P
Sbjct: 85 KVSLGKKVTFVEIPDGEEEEYVIVGRAEADPLDGKISNESPMAQSLIGKEIGDQVTVSTP 144
Query: 145 GGEKTYEILQV 155
GG+ T +I V
Sbjct: 145 GGDMTVKITAV 155
>gi|148544438|ref|YP_001271808.1| transcription elongation factor GreA [Lactobacillus reuteri DSM
20016]
gi|184153802|ref|YP_001842143.1| transcription elongation factor GreA [Lactobacillus reuteri JCM
1112]
gi|194466620|ref|ZP_03072607.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23]
gi|227363134|ref|ZP_03847269.1| elongation factor GreA [Lactobacillus reuteri MM2-3]
gi|227543959|ref|ZP_03974008.1| elongation factor GreA [Lactobacillus reuteri CF48-3A]
gi|300909709|ref|ZP_07127170.1| transcription elongation factor GreA [Lactobacillus reuteri SD2112]
gi|325682760|ref|ZP_08162276.1| transcription elongation factor GreA [Lactobacillus reuteri MM4-1A]
gi|148531472|gb|ABQ83471.1| transcription elongation factor GreA [Lactobacillus reuteri DSM
20016]
gi|183225146|dbj|BAG25663.1| transcription elongation factor GreA [Lactobacillus reuteri JCM
1112]
gi|194453656|gb|EDX42553.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23]
gi|227071852|gb|EEI10140.1| elongation factor GreA [Lactobacillus reuteri MM2-3]
gi|227186075|gb|EEI66146.1| elongation factor GreA [Lactobacillus reuteri CF48-3A]
gi|300893574|gb|EFK86933.1| transcription elongation factor GreA [Lactobacillus reuteri SD2112]
gi|324977110|gb|EGC14061.1| transcription elongation factor GreA [Lactobacillus reuteri MM4-1A]
Length = 158
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 100/151 (66%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + + RP +IK I AR+YGDLSEN+EY++AK+ Q + E R+A
Sbjct: 7 FPMTLEGKKKLEDELEEYRLKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAMVESRIA 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
++EN++ AE+ID + D ++ G T+++ E + + YQIVG+ E+D +G +S S
Sbjct: 67 QIENMLQYAEIIDNEDVDKDEVSMGRTITIQELPDEEPEEYQIVGESESDPFNGKISNES 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+A+ L+G ++G+++ V P G +I++V
Sbjct: 127 PMAKGLLGHKVGEVVEVEVPNGTIKLKIVKV 157
>gi|311031568|ref|ZP_07709658.1| transcription elongation factor GreA [Bacillus sp. m3-13]
Length = 157
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 89/150 (59%), Gaps = 1/150 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G DK+ QEL + R +++ I AR++GDLSEN+EY +AKE Q EGR+
Sbjct: 8 PMTQAGKDKLVQELENLKSVRRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRITL 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE ++ A++I D + G TV+ VE G+++ Y IVG EAD G +S SP
Sbjct: 68 LEQMVRNAKIIQ-EDKDTDAVGLGKTVTFVELPDGEEETYTIVGSAEADPFEGNISNESP 126
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ +L+GK + D +++ PGGE +I+ V
Sbjct: 127 MGSSLMGKRVNDEVTIQTPGGEMNVKIVSV 156
>gi|291534723|emb|CBL07835.1| transcription elongation factor GreA [Roseburia intestinalis M50/1]
gi|291540500|emb|CBL13611.1| transcription elongation factor GreA [Roseburia intestinalis XB6B4]
Length = 159
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 91/149 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL + R + + I EAR GDLSENAEY AAK+ Q E R+ EL
Sbjct: 7 LTYEGLKKLEDELENLKVVRRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ D+++ G +V +++ ++ Y+IVG EA+ G +S SP+
Sbjct: 67 EKILKNAEVVVEEEADLDKVSIGCSVKILDCEFDEELEYKIVGSTEANSLKGKISNESPV 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GK++GD ++V P GE +Y++L +
Sbjct: 127 GKALLGKQVGDTVTVETPAGEFSYKVLSI 155
>gi|255527650|ref|ZP_05394510.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
gi|296186915|ref|ZP_06855316.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
gi|255508663|gb|EET85043.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
gi|296048629|gb|EFG88062.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
Length = 160
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 91/152 (59%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G K++ EL + + +R I + I A ++GDLSEN+EY AK Q EGR+
Sbjct: 7 KYIMTYEGVKKLESELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEGRI 66
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LEN++ A ++D S + D ++ G+ V + + + ++ Y IVG EAD + +S
Sbjct: 67 IQLENMLKNATIVDESEIPLDVVSVGSIVKVKDYDFDEEVEYNIVGSAEADPMNNKISNE 126
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ R L+GK++GDII V P G YEIL +
Sbjct: 127 SPVGRGLVGKKIGDIIEVQVPDGVSKYEILGI 158
>gi|313115332|ref|ZP_07800807.1| transcription elongation factor GreA [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622363|gb|EFQ05843.1| transcription elongation factor GreA [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 161
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +++ G +Q+EL + + R + + I EAR++GDLSEN+EY AK Q L E
Sbjct: 1 MAQEIKMSAAGLKAMQEELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE +I A +ID S +S D ++ G V+++ + + Y IVG EAD +G +
Sbjct: 61 NRITELEQMIKNAVIIDESELSVDNVSVGTHVTILMTGEDENEEYDIVGRTEADPLNGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155
S SP+ AL+GK +GD V P G Y +L +
Sbjct: 121 SDESPVGHALLGKAVGDKAEVLLPTGHTVEYTVLNI 156
>gi|16800599|ref|NP_470867.1| transcription elongation factor GreA [Listeria innocua Clip11262]
gi|16803536|ref|NP_465021.1| transcription elongation factor GreA [Listeria monocytogenes EGD-e]
gi|46907724|ref|YP_014113.1| transcription elongation factor GreA [Listeria monocytogenes
serotype 4b str. F2365]
gi|47095449|ref|ZP_00233059.1| transcription elongation factor GreA [Listeria monocytogenes str.
1/2a F6854]
gi|217964358|ref|YP_002350036.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M) [Listeria
monocytogenes HCC23]
gi|224500662|ref|ZP_03669011.1| transcription elongation factor GreA [Listeria monocytogenes
Finland 1988]
gi|224501564|ref|ZP_03669871.1| transcription elongation factor GreA [Listeria monocytogenes FSL
R2-561]
gi|226224097|ref|YP_002758204.1| transcription elongation factor GreA [Listeria monocytogenes
Clip81459]
gi|254824445|ref|ZP_05229446.1| transcription elongation factor greA [Listeria monocytogenes FSL
J1-194]
gi|254828270|ref|ZP_05232957.1| transcription elongation factor greA [Listeria monocytogenes FSL
N3-165]
gi|254829745|ref|ZP_05234400.1| transcription elongation factor GreA [Listeria monocytogenes
10403S]
gi|254852120|ref|ZP_05241468.1| transcription elongation factor greA [Listeria monocytogenes FSL
R2-503]
gi|254898338|ref|ZP_05258262.1| transcription elongation factor GreA [Listeria monocytogenes J0161]
gi|254912170|ref|ZP_05262182.1| transcription elongation factor GreA [Listeria monocytogenes J2818]
gi|254931431|ref|ZP_05264790.1| transcription elongation factor greA [Listeria monocytogenes
HPB2262]
gi|254936498|ref|ZP_05268195.1| transcription elongation factor greA [Listeria monocytogenes F6900]
gi|254993602|ref|ZP_05275792.1| transcription elongation factor GreA [Listeria monocytogenes FSL
J2-064]
gi|255017028|ref|ZP_05289154.1| transcription elongation factor GreA [Listeria monocytogenes FSL
F2-515]
gi|255022898|ref|ZP_05294884.1| transcription elongation factor GreA [Listeria monocytogenes FSL
J1-208]
gi|255027806|ref|ZP_05299792.1| transcription elongation factor GreA [Listeria monocytogenes FSL
J2-003]
gi|255029278|ref|ZP_05301229.1| transcription elongation factor GreA [Listeria monocytogenes LO28]
gi|255521197|ref|ZP_05388434.1| transcription elongation factor GreA [Listeria monocytogenes FSL
J1-175]
gi|284801885|ref|YP_003413750.1| hypothetical protein LM5578_1640 [Listeria monocytogenes 08-5578]
gi|284995027|ref|YP_003416795.1| hypothetical protein LM5923_1592 [Listeria monocytogenes 08-5923]
gi|290893856|ref|ZP_06556834.1| transcription elongation factor greA [Listeria monocytogenes FSL
J2-071]
gi|315282402|ref|ZP_07870822.1| transcription elongation factor GreA [Listeria marthii FSL S4-120]
gi|54037217|sp|P64278|GREA_LISIN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54041327|sp|P64277|GREA_LISMO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|67460875|sp|Q71ZH4|GREA_LISMF RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799560|sp|B8DE15|GREA_LISMH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|259647647|sp|C1KVE3|GREA_LISMC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|16410925|emb|CAC99574.1| lmo1496 [Listeria monocytogenes EGD-e]
gi|16414004|emb|CAC96762.1| lin1531 [Listeria innocua Clip11262]
gi|46880993|gb|AAT04290.1| transcription elongation factor GreA [Listeria monocytogenes
serotype 4b str. F2365]
gi|47016270|gb|EAL07193.1| transcription elongation factor GreA [Listeria monocytogenes str.
1/2a F6854]
gi|217333628|gb|ACK39422.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M) [Listeria
monocytogenes HCC23]
gi|225876559|emb|CAS05268.1| Putative transcription elongation factor GreA [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|258600658|gb|EEW13983.1| transcription elongation factor greA [Listeria monocytogenes FSL
N3-165]
gi|258605422|gb|EEW18030.1| transcription elongation factor greA [Listeria monocytogenes FSL
R2-503]
gi|258609092|gb|EEW21700.1| transcription elongation factor greA [Listeria monocytogenes F6900]
gi|284057447|gb|ADB68388.1| hypothetical protein LM5578_1640 [Listeria monocytogenes 08-5578]
gi|284060494|gb|ADB71433.1| hypothetical protein LM5923_1592 [Listeria monocytogenes 08-5923]
gi|290556573|gb|EFD90109.1| transcription elongation factor greA [Listeria monocytogenes FSL
J2-071]
gi|293582981|gb|EFF95013.1| transcription elongation factor greA [Listeria monocytogenes
HPB2262]
gi|293590143|gb|EFF98477.1| transcription elongation factor GreA [Listeria monocytogenes J2818]
gi|293593681|gb|EFG01442.1| transcription elongation factor greA [Listeria monocytogenes FSL
J1-194]
gi|307571077|emb|CAR84256.1| greA [Listeria monocytogenes L99]
gi|313608715|gb|EFR84544.1| transcription elongation factor GreA [Listeria monocytogenes FSL
F2-208]
gi|313613954|gb|EFR87678.1| transcription elongation factor GreA [Listeria marthii FSL S4-120]
gi|328465535|gb|EGF36764.1| transcription elongation factor GreA [Listeria monocytogenes 1816]
gi|328474861|gb|EGF45661.1| transcription elongation factor GreA [Listeria monocytogenes 220]
gi|332311938|gb|EGJ25033.1| Transcription elongation factor [Listeria monocytogenes str. Scott
A]
Length = 160
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 93/151 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+
Sbjct: 7 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S S
Sbjct: 67 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA+ L+G + G+ +++ P G+ + +I ++
Sbjct: 127 PIAKGLLGHKEGEEVTIQTPAGDMSVKIEKI 157
>gi|189502128|ref|YP_001957845.1| hypothetical protein Aasi_0733 [Candidatus Amoebophilus asiaticus
5a2]
gi|238692311|sp|B3ESB4|GREA_AMOA5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189497569|gb|ACE06116.1| hypothetical protein Aasi_0733 [Candidatus Amoebophilus asiaticus
5a2]
Length = 157
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 93/150 (62%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G +++ EL + E R ++ + +SEAR GDLSENAEY AAKE Q + E R+A+LE
Sbjct: 8 TEEGLQRLKGELTQLKSEGRAKVAEQLSEARDKGDLSENAEYDAAKEAQEILERRIAKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
++ A VI+ ++ ++ + V + K G Y +V ++EAD++ G +SI SPI
Sbjct: 68 ELMINARVINKDNINTSAVSILSKVKIKNKKLGKVSTYTMVSEEEADLKEGKISIESPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ L+GK+ G++ V AP G+ +EIL + +
Sbjct: 128 KGLLGKKAGEVAIVEAPAGKIEFEILDISF 157
>gi|330950316|gb|EGH50576.1| transcription elongation factor GreA [Pseudomonas syringae Cit 7]
Length = 126
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 1/126 (0%)
Query: 34 ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD-RIAFGATV 92
I AR GDL ENAEY AA+E Q + E R+ ++E + A +ID++T+ ++ FG TV
Sbjct: 1 IGTARELGDLKENAEYHAAREQQGMVEARIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTV 60
Query: 93 SLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
+ + + YQIVG+ EAD++ G +S+ SPIARALI KE GD++ V P G YEI
Sbjct: 61 EIANVETDESVVYQIVGEDEADIKKGKISVGSPIARALIAKEEGDVVVVKTPSGVIEYEI 120
Query: 153 LQVLWI 158
++V I
Sbjct: 121 IEVRHI 126
>gi|302871282|ref|YP_003839918.1| GreA/GreB family elongation factor [Caldicellulosiruptor
obsidiansis OB47]
gi|302574141|gb|ADL41932.1| GreA/GreB family elongation factor [Caldicellulosiruptor
obsidiansis OB47]
Length = 162
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 93/152 (61%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+
Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAAVEERI 68
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A LE +I A++ID +S D + G V + ++GD Y IVG +EAD + +S
Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDVFEYSIVGSKEADPLNFKISDE 128
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +AL+GK++GD++ VN P G+ Y+IL++
Sbjct: 129 SPVGKALVGKKVGDVVEVNVPAGKFRYKILEI 160
>gi|313618851|gb|EFR90728.1| transcription elongation factor GreA [Listeria innocua FSL S4-378]
Length = 175
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 93/151 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+
Sbjct: 22 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 81
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S S
Sbjct: 82 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 141
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA+ L+G + G+ +++ P G+ + +I ++
Sbjct: 142 PIAKGLLGHKEGEEVTIQTPAGDMSVKIEKI 172
>gi|116872925|ref|YP_849706.1| transcription elongation factor GreA [Listeria welshimeri serovar
6b str. SLCC5334]
gi|123458483|sp|A0AIU5|GREA_LISW6 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116741803|emb|CAK20927.1| transcription elongation factor GreA [Listeria welshimeri serovar
6b str. SLCC5334]
Length = 160
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 93/151 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+
Sbjct: 7 FPMTLEGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S S
Sbjct: 67 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA+ L+G + G+ +++ P G+ +I ++
Sbjct: 127 PIAKGLLGHKEGEEVTIQTPAGDMNVKIEKI 157
>gi|317120993|ref|YP_004100996.1| transcription elongation factor GreA [Thermaerobacter marianensis
DSM 12885]
gi|315590973|gb|ADU50269.1| transcription elongation factor GreA [Thermaerobacter marianensis
DSM 12885]
Length = 159
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 98/155 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ ++++G K+++EL++ + +R + + I +AR +GD+SEN+EY+ AK Q E
Sbjct: 1 MDKELLLSAEGLRKLEEELQYLKSVKRREVAQRIKQAREFGDISENSEYEEAKNEQAFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE ++ A +++ + ++ G+TV L + ++G++ Y IVG EAD + +
Sbjct: 61 GRIIELEKMLRNARIVNDEEIDPTKVNIGSTVHLKDVDTGEEVQYTIVGSNEADPAALRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL G+ +G+++ V P G YEI+++
Sbjct: 121 SYQSPVGKALFGRSVGEVVEVKVPAGTLRYEIVRI 155
>gi|240143459|ref|ZP_04742060.1| transcription elongation factor GreA [Roseburia intestinalis L1-82]
gi|257204492|gb|EEV02777.1| transcription elongation factor GreA [Roseburia intestinalis L1-82]
Length = 159
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 91/149 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL + R + + I EAR GDLSENAEY AAK+ Q E R+ EL
Sbjct: 7 LTYEGLKKLEDELENLKVVRRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ D+++ G +V +++ ++ Y+IVG EA+ G +S SP+
Sbjct: 67 EKILKNAEVVVEEEADLDKVSIGCSVKILDCEFEEELEYKIVGSTEANSLKGKISNESPV 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GK++GD ++V P GE +Y++L +
Sbjct: 127 GKALLGKQVGDTVTVETPAGEFSYKVLSI 155
>gi|289434776|ref|YP_003464648.1| transcription elongation factor GreA [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289171020|emb|CBH27562.1| transcription elongation factor GreA [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|313637769|gb|EFS03123.1| transcription elongation factor GreA [Listeria seeligeri FSL
S4-171]
Length = 160
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 92/151 (60%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+
Sbjct: 7 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+EN+I A++ID + + G TV+ VE G+++ Y IVG EAD G +S S
Sbjct: 67 TIENMIRNAQIIDAAESHNGLVTLGNTVTFVELPDGEEETYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA+ L+G + G+ +++ P G+ +I ++
Sbjct: 127 PIAKGLLGHKEGEEVTIQTPAGDMNVKIEKI 157
>gi|221633065|ref|YP_002522290.1| transcription elongation factor greA [Thermomicrobium roseum DSM
5159]
gi|254799575|sp|B9L0L0|GREA_THERP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|221157000|gb|ACM06127.1| transcription elongation factor greA [Thermomicrobium roseum DSM
5159]
Length = 156
Score = 107 bits (266), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 93/155 (60%), Gaps = 5/155 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++IP+T +G + ++QE + + RP I + I EAR +GD+ ENA Y AAK Q EGR
Sbjct: 4 ERIPITREGLEALRQEYEYLVKHRRPEIARVIQEAREHGDIRENAAYDAAKHDQAFIEGR 63
Query: 63 MAELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ E+E ++ R E+I+ T GDR + G+TV++ + G+ + Y IVG EA +G +
Sbjct: 64 IREIEELLKRVELIEQPT-DGDRSVVRVGSTVTI--EIDGEIETYTIVGAIEAKPSAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ RAL+G G+I+ + P G I++V
Sbjct: 121 SNESPVGRALLGHRAGEIVPIETPNGTLMARIIEV 155
>gi|150026396|ref|YP_001297222.1| transcription elongation factor GreA [Flavobacterium psychrophilum
JIP02/86]
gi|166200662|sp|A6H247|GREA_FLAPJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|149772937|emb|CAL44421.1| Transcription elongation factor GreA [Flavobacterium psychrophilum
JIP02/86]
Length = 158
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 94/148 (63%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T++G K++ EL + ERP+ I+EAR GDLSENAEY AAKE Q L E ++ ++E
Sbjct: 8 TAEGLKKLKDELEQLKAIERPKASADIAEARDKGDLSENAEYDAAKEAQGLLELKIKKME 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + A +ID S + + + V + +++G + +Y +V + EAD+++G +S++SPI
Sbjct: 68 EVYSNARLIDESQLDVSKALVLSHVKIKNQSNGMEMSYHLVAESEADLKTGKISVTSPIG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK +G+I + P G +E+L++
Sbjct: 128 KGLLGKSVGEIAEITVPNGILKFEVLEI 155
>gi|315644113|ref|ZP_07897283.1| transcription elongation factor GreA [Paenibacillus vortex V453]
gi|315280488|gb|EFU43777.1| transcription elongation factor GreA [Paenibacillus vortex V453]
Length = 163
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 94/155 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++ +T +G+DK+Q+EL + +R + + I A +YGDL EN+EY +AK Q E
Sbjct: 6 MAEELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFME 65
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE + A ++D +S + G+ V L + +K YQ+VG EADV + V
Sbjct: 66 TRIIILEKTLNSARIVDSKQVSSTTVNVGSNVVLNDIEFAEKLEYQVVGPAEADVLNNKV 125
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+GK +GD ++V+AP G YE+L++
Sbjct: 126 SYESPLGKALMGKAVGDQVNVDAPMGIVKYELLEI 160
>gi|187777498|ref|ZP_02993971.1| hypothetical protein CLOSPO_01073 [Clostridium sporogenes ATCC
15579]
gi|187774426|gb|EDU38228.1| hypothetical protein CLOSPO_01073 [Clostridium sporogenes ATCC
15579]
Length = 160
Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 91/152 (59%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR+
Sbjct: 6 KYVMTYEGVKKLEEELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFAEGRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S
Sbjct: 66 IQLENMLKNASIVDENEVPKDVVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKISNE 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ LIGK++GDII V P G YEIL+V
Sbjct: 126 SPVGNGLIGKKVGDIIEVTVPDGVSKYEILEV 157
>gi|222151496|ref|YP_002560652.1| transcription elongation factor [Macrococcus caseolyticus JCSC5402]
gi|254799561|sp|B9E6Y8|GREA_MACCJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|222120621|dbj|BAH17956.1| transcription elongation factor [Macrococcus caseolyticus JCSC5402]
Length = 158
Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 91/146 (62%), Gaps = 1/146 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + P+T +GFDK++ EL + RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 3 MQKEYPMTQEGFDKLEVELEHLKTVRRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFVE 62
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ ++E ++ A +I+ S + G TV+ E ++++Y+IVG EAD G +
Sbjct: 63 QEITKIEMMLRHAVIIE-DDGSKSEVQIGRTVTFAEVPGNEEESYKIVGSAEADPFEGKI 121
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S SPIA+AL+GK++GD ++V P G
Sbjct: 122 SNESPIAKALLGKKVGDEVNVPLPNG 147
>gi|329767531|ref|ZP_08259054.1| transcription elongation factor greA [Gemella haemolysans M341]
gi|328835865|gb|EGF85587.1| transcription elongation factor greA [Gemella haemolysans M341]
Length = 162
Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/140 (41%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK+ +EL + ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+ E+
Sbjct: 11 MTQEGYDKLVEELEYYKKVKRPEVIEKIKIARSFGDLSENSEYDAAKDEQGFIEQRILEM 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A +I++ S I G TV+ E G + Y+IVG EA+ +S SP+
Sbjct: 71 EQMIRYAVIIELDEKSS-AIRLGNTVTYQELPDGLTETYKIVGSAEANPFEYKISNESPV 129
Query: 127 ARALIGKELGDIISVNAPGG 146
A+AL+GKE+GD+ V+ P G
Sbjct: 130 AQALLGKEVGDVAKVSLPTG 149
>gi|168701830|ref|ZP_02734107.1| transcription elongation factor greA [Gemmata obscuriglobus UQM
2246]
Length = 161
Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 95/153 (62%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D+IP+T +G+DK++ EL + E I K ++ AR GDLSENAEY AA+E Q + + R
Sbjct: 4 DRIPMTREGYDKLKVELDRLRGAEMIEITKRVAAARDLGDLSENAEYHAAREDQGILQAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + ++RA ++D S + D +AFG+ V +++ + +++ +++V + + G +
Sbjct: 64 IDALSDRLSRAVIVDTSNLPKDTVAFGSKVRVLDVDVDEEETFELVSPGQENPDKGRILT 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPI + LIG++ GD + + P G ++IL++
Sbjct: 124 GSPIGQGLIGRKKGDTVEIQVPSGTIKFKILEI 156
>gi|153938788|ref|YP_001392874.1| transcription elongation factor GreA [Clostridium botulinum F str.
Langeland]
gi|168183600|ref|ZP_02618264.1| transcription elongation factor GreA [Clostridium botulinum Bf]
gi|170756932|ref|YP_001783160.1| transcription elongation factor GreA [Clostridium botulinum B1 str.
Okra]
gi|170758438|ref|YP_001788860.1| transcription elongation factor GreA [Clostridium botulinum A3 str.
Loch Maree]
gi|237796981|ref|YP_002864533.1| transcription elongation factor GreA [Clostridium botulinum Ba4
str. 657]
gi|229485765|sp|B1IGJ3|GREA_CLOBK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238686691|sp|A7GJB4|GREA_CLOBL RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238688748|sp|B1KTC2|GREA_CLOBM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|259647638|sp|C3KVU0|GREA_CLOB6 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|152934684|gb|ABS40182.1| transcription elongation factor GreA [Clostridium botulinum F str.
Langeland]
gi|169122144|gb|ACA45980.1| transcription elongation factor GreA [Clostridium botulinum B1 str.
Okra]
gi|169405427|gb|ACA53838.1| transcription elongation factor GreA [Clostridium botulinum A3 str.
Loch Maree]
gi|182673170|gb|EDT85131.1| transcription elongation factor GreA [Clostridium botulinum Bf]
gi|229263650|gb|ACQ54683.1| transcription elongation factor GreA [Clostridium botulinum Ba4
str. 657]
gi|295320851|gb|ADG01229.1| transcription elongation factor GreA [Clostridium botulinum F str.
230613]
Length = 160
Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 91/152 (59%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR+
Sbjct: 6 KYVMTYEGVKKLEEELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEGRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S
Sbjct: 66 IQLENMLKNASIVDENEVPKDIVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKISNE 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ LIGK++GDII V P G YEIL+V
Sbjct: 126 SPVGHGLIGKKVGDIIEVTVPDGVSKYEILEV 157
>gi|322391681|ref|ZP_08065149.1| transcription elongation factor GreA [Streptococcus peroris ATCC
700780]
gi|321145492|gb|EFX40885.1| transcription elongation factor GreA [Streptococcus peroris ATCC
700780]
Length = 160
Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 84/129 (65%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D +
Sbjct: 28 RPEVVERIKVARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E D++ Y IVG AD +G VS SPI +ALIGK+ GDI +V P G
Sbjct: 88 AIGKTVTIQEVGEDDEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDIATVETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|149177265|ref|ZP_01855871.1| transcription elongation factor greA [Planctomyces maris DSM 8797]
gi|148843979|gb|EDL58336.1| transcription elongation factor greA [Planctomyces maris DSM 8797]
Length = 158
Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+ P+T +G+DK+++E+R + + P I + I++ARA GDL EN EY A +E Q + +
Sbjct: 1 MDRHPITQEGYDKLREEIRHLESDVMPEIAEKIADARAEGDLKENTEYHAQREAQGMTQA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ +L++ + + D STM + FG+ V++ + G + Y+ VG E D ++
Sbjct: 61 KINQLKSKLANCYIADKSTMPKGVVTFGSIVTVKNLDDGLDEKYEFVGPGEEDYLGEVMK 120
Query: 122 I--SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
I SSP+A L+ K++GD + V P G +E++Q+
Sbjct: 121 ILTSSPLAEGLLNKKVGDKVEVEVPSGTLKFEVIQI 156
>gi|195978755|ref|YP_002123999.1| transcription elongation factor GreA [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225867928|ref|YP_002743876.1| transcription elongation factor [Streptococcus equi subsp.
zooepidemicus]
gi|225871158|ref|YP_002747105.1| transcription elongation factor [Streptococcus equi subsp. equi
4047]
gi|195975460|gb|ACG62986.1| transcription elongation factor GreA [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225700562|emb|CAW95060.1| transcription elongation factor [Streptococcus equi subsp. equi
4047]
gi|225701204|emb|CAW98132.1| transcription elongation factor [Streptococcus equi subsp.
zooepidemicus]
Length = 176
Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 2/126 (1%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY AAK+ Q EG+++ LE I AE+ID ++ D +
Sbjct: 44 RPEVVERIKIARSYGDLSENSEYDAAKDEQAFVEGQISTLETKIRYAEIIDSDAVAKDEV 103
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV + E + Y IVG AD+ SG +S SPIA+ALIGK+ GD + + +P
Sbjct: 104 AIGKTVVVQEVGTQTTDTYHIVGAAGADIFSGKISNESPIAQALIGKKTGDKVKIESPAA 163
Query: 147 EKTYEI 152
TYE+
Sbjct: 164 --TYEV 167
>gi|315303245|ref|ZP_07873892.1| transcription elongation factor GreA [Listeria ivanovii FSL F6-596]
gi|313628385|gb|EFR96871.1| transcription elongation factor GreA [Listeria ivanovii FSL F6-596]
Length = 175
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 92/151 (60%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+
Sbjct: 22 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 81
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+EN+I A++ID + + G TV+ VE G ++ Y IVG EAD G +S S
Sbjct: 82 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFVELPDGVEETYTIVGSAEADPFEGKISNDS 141
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA+ L+G + G+ +++ P G+ + +I ++
Sbjct: 142 PIAKGLLGHKEGEEVTIQTPAGDMSVKIQKI 172
>gi|310829433|ref|YP_003961790.1| GreA/GreB family elongation factor [Eubacterium limosum KIST612]
gi|308741167|gb|ADO38827.1| GreA/GreB family elongation factor [Eubacterium limosum KIST612]
Length = 161
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 91/153 (59%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+++ +T +G D +++ L + + +R + I AR YGDLSENAEY AK Q EG
Sbjct: 7 EELVMTQEGLDNLKKRLEYLKTVKRYEVAARIKTAREYGDLSENAEYDEAKSEQGFVEGE 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++ELE I + +VID + + + + G+ V + + GD + Y+IVG E+D+ +S
Sbjct: 67 ISELEAKIKKVKVIDDNDIHTEDVGVGSIVKVKDLEFGDTEEYKIVGSAESDIAQNKLSN 126
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ R LIG ++G ++++ P GE YEIL +
Sbjct: 127 ESPVGRGLIGAKVGQVVTIPIPDGEVQYEILDI 159
>gi|322807846|emb|CBZ05421.1| transcription elongation factor GreA [Clostridium botulinum H04402
065]
Length = 160
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 91/152 (59%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR+
Sbjct: 6 KYVMTYEGVKKLEEELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEGRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S
Sbjct: 66 IQLENMLKNASIVDENEVPKDIVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKISNE 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ LIGK++GDII V P G YEIL+V
Sbjct: 126 SPVGHGLIGKKVGDIIEVTVPDGISKYEILEV 157
>gi|323343448|ref|ZP_08083675.1| transcription elongation factor GreA [Prevotella oralis ATCC 33269]
gi|323095267|gb|EFZ37841.1| transcription elongation factor GreA [Prevotella oralis ATCC 33269]
Length = 155
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 87/140 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ ELR + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ L
Sbjct: 4 MSQEGYDKLVAELRQLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINRL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A+++D S +S D + + V + + K +Y IV + EAD++ G +SI +PI
Sbjct: 64 KLTIAEAKIVDTSRLSTDAVQILSKVDMTNMTTKSKMSYTIVSESEADLKQGKISIKTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K++GD + + P G
Sbjct: 124 AQGLLNKKVGDEVEIKIPRG 143
>gi|288925501|ref|ZP_06419434.1| transcription elongation factor GreA [Prevotella buccae D17]
gi|315606633|ref|ZP_07881644.1| transcription elongation factor GreA [Prevotella buccae ATCC 33574]
gi|288337717|gb|EFC76070.1| transcription elongation factor GreA [Prevotella buccae D17]
gi|315251643|gb|EFU31621.1| transcription elongation factor GreA [Prevotella buccae ATCC 33574]
Length = 155
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 87/140 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ +
Sbjct: 4 MSQEGYDKLVAELKRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINRM 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A+++D S +S D + +TV + + K Y IV + EA+++ G +SI +PI
Sbjct: 64 KTTIAEAKIVDTSRLSADAVQILSTVEMTNMGNKAKMTYTIVSESEANLKEGKISIKTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K++GD+ + P G
Sbjct: 124 AQGLLNKKVGDVAEIKIPSG 143
>gi|299535716|ref|ZP_07049037.1| transcription elongation factor GreA [Lysinibacillus fusiformis
ZC1]
gi|298728916|gb|EFI69470.1| transcription elongation factor GreA [Lysinibacillus fusiformis
ZC1]
Length = 162
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/154 (40%), Positives = 93/154 (60%), Gaps = 4/154 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T++G K+++EL + E R I++ I AR +GDLSENAEY +AKE Q EGR++
Sbjct: 8 PMTAEGKRKLEEELVKLETETRKEIVERIKIARDFGDLSENAEYDSAKEEQAFLEGRIST 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVE----KNSGDKKNYQIVGDQEADVQSGLVS 121
L+++I A +I ++ G TV+ VE K S D+++Y IVG EAD +S
Sbjct: 68 LKSMIRNAVIISEDETDNSVVSLGKTVTFVEIINGKPSTDEESYTIVGSAEADPMEFRIS 127
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPIA+ L+G+ G+ + V PGGE +IL +
Sbjct: 128 NESPIAKGLLGRAEGEEVVVQTPGGEMKVKILSI 161
>gi|254520541|ref|ZP_05132597.1| transcription elongation factor GreA [Clostridium sp. 7_2_43FAA]
gi|226914290|gb|EEH99491.1| transcription elongation factor GreA [Clostridium sp. 7_2_43FAA]
Length = 160
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 89/152 (58%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EGR+
Sbjct: 6 KFVMTYEGVKKLEDELEFLKSVKRKEITEKIKVALGYGDLSENSEYDEAKNEQAFTEGRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LEN++ A V+D S + D+++ G V + + ++ Y IVG EAD +S
Sbjct: 66 IQLENMLKNAVVVDGSEIPTDKVSVGTKVKVKDYEFDEEVEYSIVGSAEADPMEFKISNE 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ AL+GK++G+I+ V PGG +EIL +
Sbjct: 126 SPVGAALLGKKVGEIVEVLVPGGINKFEILGI 157
>gi|168180989|ref|ZP_02615653.1| transcription elongation factor GreA [Clostridium botulinum NCTC
2916]
gi|226950976|ref|YP_002806067.1| transcription elongation factor GreA [Clostridium botulinum A2 str.
Kyoto]
gi|254799555|sp|C1FNC6|GREA_CLOBJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|182668066|gb|EDT80045.1| transcription elongation factor GreA [Clostridium botulinum NCTC
2916]
gi|226841785|gb|ACO84451.1| transcription elongation factor GreA [Clostridium botulinum A2 str.
Kyoto]
Length = 160
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 91/152 (59%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR+
Sbjct: 6 KYVMTYEGVKKLEEELEFLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEGRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S
Sbjct: 66 IQLENMLKNASIVDENEVPKDIVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKISNE 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ LIGK++GDII V P G YEIL+V
Sbjct: 126 SPVGHGLIGKKVGDIIEVTVPDGVSKYEILEV 157
>gi|289449476|ref|YP_003475259.1| transcription elongation factor GreA [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184023|gb|ADC90448.1| transcription elongation factor GreA [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 160
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 97/155 (62%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V++I +T +GF+ +++EL R+ R + + I A ++GDLSEN+EY AK+ Q NEG
Sbjct: 4 VEQIEMTLEGFNHLKEELEHRKIVVRSEVAERIKVALSFGDLSENSEYDDAKQAQAENEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E I+ + VID +S + G+ L ++ +G++ Y IVG +E ++ +S
Sbjct: 64 RIMEIEAILKKVRVIDNDEISKTNVTLGSAFVLRDEATGEETQYTIVGAKEENIFENKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ + ++GK+ G +ISV AP G+ Y+I+++
Sbjct: 124 SDSPVGQQVLGKKKGSVISVKAPIGQLKYKIVKIC 158
>gi|268592314|ref|ZP_06126535.1| transcription elongation factor GreB [Providencia rettgeri DSM
1131]
gi|291312097|gb|EFE52550.1| transcription elongation factor GreB [Providencia rettgeri DSM
1131]
Length = 161
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 1/155 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G+D + +EL++ +EERPR+ +++SEA A GD SENAEY K+ +
Sbjct: 1 MTKSLLITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + + +I+ R+ FGA V L ++N + + ++IVG E + +
Sbjct: 61 RRIRFLSKRLDQLRIIEPDPRQEGRVFFGAWVKLEDENE-NIRIFRIVGADEFNPTKQWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SI SP+ARALIGK++ D I+VN PGG+ TY +L++
Sbjct: 120 SIDSPVARALIGKQVDDEITVNTPGGQVTYFVLEI 154
>gi|157150808|ref|YP_001449835.1| transcription elongation factor GreA [Streptococcus gordonii str.
Challis substr. CH1]
gi|262282147|ref|ZP_06059916.1| transcription elongation factor greA [Streptococcus sp. 2_1_36FAA]
gi|189042252|sp|A8AVM5|GREA_STRGC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|157075602|gb|ABV10285.1| transcription elongation factor greA [Streptococcus gordonii str.
Challis substr. CH1]
gi|262262601|gb|EEY81298.1| transcription elongation factor greA [Streptococcus sp. 2_1_36FAA]
Length = 160
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE++D ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVDSDAVAKDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
G TV++ E +K+ Y IVG AD +G VS SPI +ALIGK+ GDI +V P G
Sbjct: 88 GIGKTVTIQEVGETEKEVYIIVGSAGADAFAGKVSNESPIGQALIGKKKGDIATVETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|126653894|ref|ZP_01725741.1| transcription elongation factor GreA [Bacillus sp. B14905]
gi|126589619|gb|EAZ83758.1| transcription elongation factor GreA [Bacillus sp. B14905]
Length = 162
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/154 (39%), Positives = 94/154 (61%), Gaps = 4/154 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T++G K+++EL + E R I++ I AR +GDLSENAEY +AKE Q EGR++
Sbjct: 8 PMTAEGKRKLEEELVKLETETRKEIVERIKIARDFGDLSENAEYDSAKEEQAFLEGRIST 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVE----KNSGDKKNYQIVGDQEADVQSGLVS 121
L+++I A +I ++ G TV+ VE K S D+++Y IVG EAD +S
Sbjct: 68 LKSMIRNAVIISEDETDNSVVSLGKTVTFVEIINGKPSTDEESYTIVGSAEADPMEFRIS 127
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPIA+ L+G+ G+ ++V PGGE +I+ +
Sbjct: 128 NESPIAKGLLGRAEGEEVAVQTPGGEMKVKIVSI 161
>gi|311277660|ref|YP_003939891.1| transcription elongation factor GreB [Enterobacter cloacae SCF1]
gi|308746855|gb|ADO46607.1| transcription elongation factor GreB [Enterobacter cloacae SCF1]
Length = 157
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 92/150 (61%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYEKLKKELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + GD K ++IVG E Q +SI
Sbjct: 62 VRYLTKCLEHLKIVDYSPQQEGKVFFGAWVE-IENDDGDIKRFRIVGYDEIFGQKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ +V PGGE T+ +
Sbjct: 121 DSPMARALLKKEVGDLATVQTPGGEATWYV 150
>gi|124006704|ref|ZP_01691535.1| transcription elongation factor GreA [Microscilla marina ATCC
23134]
gi|123987612|gb|EAY27312.1| transcription elongation factor GreA [Microscilla marina ATCC
23134]
Length = 157
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 94/148 (63%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G K++ EL+ + + R + I+EAR GDLSENAEY AAK+ Q L E ++A+LE
Sbjct: 8 TKEGLKKLKDELQHLKTKGRADMAYQIAEARDKGDLSENAEYDAAKDAQGLLELKIAKLE 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + A +ID S + +++ +TV + + Y +V ++EA+++ G +S+ SP+
Sbjct: 68 DTVANARIIDESNIDTSKVSILSTVKIKHQKLKKVLTYTLVSEEEANLKEGKISVQSPVG 127
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK++G++ V+ P G+ +EIL++
Sbjct: 128 KGLLGKKVGEVAEVHTPAGKTDFEILEI 155
>gi|238754105|ref|ZP_04615463.1| Transcription elongation factor greB [Yersinia ruckeri ATCC 29473]
gi|238707601|gb|EEP99960.1| Transcription elongation factor greB [Yersinia ruckeri ATCC 29473]
Length = 163
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 91/149 (61%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + EL++ +EERPR+ +A+SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWQALDLELKYLWREERPRVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V VE + G+++ +++VG E D +SI SP+
Sbjct: 67 SKRLDVLKIVDPDPRQEGKVYFGAWVR-VENDQGEERVFRLVGPDEFDPAKKWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D I+V P GE TYEIL +
Sbjct: 126 ARALIGKQVDDEITVQTPNGEATYEILAI 154
>gi|116625760|ref|YP_827916.1| GreA/GreB family elongation factor [Candidatus Solibacter usitatus
Ellin6076]
gi|116228922|gb|ABJ87631.1| GreA/GreB family elongation factor [Candidatus Solibacter usitatus
Ellin6076]
Length = 164
Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/145 (38%), Positives = 88/145 (60%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
K+Q E+ + E + K I +AR +GDL ENAEY AAK+ Q R+ +L++ + +
Sbjct: 7 KLQDEITALEYELHVDLPKEILKARLHGDLKENAEYHAAKDRQGFVSARLGQLKSRLGQL 66
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+ID + + D+ G+TV +++ S + Y +V +EAD +G VS +SPI RAL+GK
Sbjct: 67 AMIDFTKIPRDKAGLGSTVVVLDVKSDQEITYHLVTSEEADAPNGKVSTTSPIGRALLGK 126
Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158
+GD + V +PGG K EIL++ I
Sbjct: 127 TVGDEVKVMSPGGVKELEILKLTTI 151
>gi|308068951|ref|YP_003870556.1| transcription elongation factor greA (transcript cleavage factor
greA) [Paenibacillus polymyxa E681]
gi|305858230|gb|ADM70018.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Paenibacillus polymyxa E681]
Length = 159
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 94/153 (61%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+++ +T +G K++ EL+ + +R + + + A +YGDL EN+EY +AK+ Q E R
Sbjct: 4 EEVLLTKEGLAKLEDELKELKTVKRKELAERLKLAISYGDLKENSEYHSAKDDQAFMETR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LE ++T+A V+D S + ++ G+TV L + +K Y+IV EADV +S
Sbjct: 64 ILILEKMLTKARVVDESNLDLRTVSIGSTVILNDIEFSEKMEYKIVSPAEADVLDNKISY 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +AL+GKE+G II V+AP YE+L++
Sbjct: 124 ESPLGKALLGKEVGSIIHVDAPMAVIKYELLEI 156
>gi|269792851|ref|YP_003317755.1| transcription elongation factor GreA [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100486|gb|ACZ19473.1| transcription elongation factor GreA [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 164
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 97/153 (63%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+++ +T +G++K++QEL + + R I + EARA+GDLSENAEY AAKE Q E R
Sbjct: 9 EQVIMTREGYEKLKQELASLRGDGRSEIASKLEEARAFGDLSENAEYHAAKEEQEKLESR 68
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LE +++A+V++ S + ++ GATV L + ++G+ Y +VG +EAD ++ +S
Sbjct: 69 IMWLEYQLSKAKVVESSDIDTSTVSLGATVQLRDLDTGNTYTYVLVGSEEADPKANRISA 128
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +A+IG+ G+ + V P G + I ++
Sbjct: 129 QSPVGKAIIGRAEGEEVIVRVPKGTRHLRIERI 161
>gi|295694793|ref|YP_003588031.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912]
gi|295410395|gb|ADG04887.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912]
Length = 158
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 92/152 (60%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
++ +T G K+++EL + + +R + + I A +YGD+SEN+EY+ AK Q EGR+
Sbjct: 5 EVLLTPGGLQKLEEELEYLKSVKRREVAERIKTAISYGDISENSEYEDAKNEQAFVEGRI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LE ++ A +I S + D ++ G+TVSL + G+ Y IVG E+D +S
Sbjct: 65 ITLEKMLRNARIIKDSDVDTDVVSIGSTVSLKDLEFGEVVEYTIVGSAESDPVENRISNE 124
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ RAL+G+ +G++++V P G YEILQ+
Sbjct: 125 SPVGRALLGRRVGEVVNVEVPDGVLQYEILQI 156
>gi|78776745|ref|YP_393060.1| GreA/GreB family elongation factor [Sulfurimonas denitrificans DSM
1251]
gi|78497285|gb|ABB43825.1| GreA/GreB family elongation factor [Sulfurimonas denitrificans DSM
1251]
Length = 174
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 96/152 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P++ +G+D + +E ++ + E+P+ + A A GD SENA+YQAAKE + R+
Sbjct: 4 PMSIEGYDVLIEEFKFLLEVEKPKTAQEKLVAAALGDRSENADYQAAKEKLRHIDKRLFY 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +I +A +ID ST+ +++FG++V +++ S ++ Y I G E++ ++GL+SI SP
Sbjct: 64 LNAMIQKAHIIDPSTLLHTKVSFGSSVRILDLESDKEEVYTICGVLESEPENGLISIHSP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ ++GK + D + P +K YEIL++ +
Sbjct: 124 LAQVMLGKRVSDEFKIQLPLMKKEYEILEIYY 155
>gi|329924684|ref|ZP_08279699.1| transcription elongation factor GreA [Paenibacillus sp. HGF5]
gi|328940518|gb|EGG36840.1| transcription elongation factor GreA [Paenibacillus sp. HGF5]
Length = 163
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 92/155 (59%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++ +T +G+DK+Q+EL + +R + + I A +YGDL EN+EY +AK Q E
Sbjct: 6 MAEELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFME 65
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE + A ++D +S + G+ V L + ++ YQ+VG EADV + V
Sbjct: 66 TRIIILEKTLNNARIVDAKDISSTTVNVGSNVVLNDIEFSERLEYQVVGPAEADVANNKV 125
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+GK +GD + V AP G YE+L++
Sbjct: 126 SYESPLGKALMGKAVGDKVHVEAPMGIVKYELLEI 160
>gi|322387442|ref|ZP_08061052.1| transcription elongation factor GreA [Streptococcus infantis ATCC
700779]
gi|321141971|gb|EFX37466.1| transcription elongation factor GreA [Streptococcus infantis ATCC
700779]
Length = 160
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 85/129 (65%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ + +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAKNEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +K+ Y IVG AD +G VS SPI +ALIGK+ GD++++ P G
Sbjct: 88 AIGKTVTIQEVGEDEKEVYIIVGSAGADAFAGKVSNESPIGQALIGKKKGDVVTIETPAG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|254498603|ref|ZP_05111322.1| transcription elongation factor GreA [Legionella drancourtii
LLAP12]
gi|254352143|gb|EET10959.1| transcription elongation factor GreA [Legionella drancourtii
LLAP12]
Length = 139
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/116 (43%), Positives = 85/116 (73%), Gaps = 1/116 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +G + +++EL+ + +RPRI+++I+ ARA+GDL ENAEY AA+E Q+ NEG
Sbjct: 22 MNKHPMTIQGAEALKEELQRLKFVDRPRIVESIATARAHGDLKENAEYHAAREQQSFNEG 81
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
R+ ELE ++ A++IDIS + + ++ FG+TV++ + + YQIVG+ EAD++
Sbjct: 82 RIQELEAKLSNAQIIDISKLPNNGKVVFGSTVTVCHVATDAQLTYQIVGEDEADIK 137
>gi|313205435|ref|YP_004044092.1| transcription elongation factor grea [Paludibacter propionicigenes
WB4]
gi|312444751|gb|ADQ81107.1| transcription elongation factor GreA [Paludibacter propionicigenes
WB4]
Length = 151
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 95/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G+ K+ +EL + +RP I K I EAR GDLSENAEY AAKE Q + E R++ L
Sbjct: 1 MTAEGYRKLVEELNELESVQRPAISKQIGEARDKGDLSENAEYDAAKEAQGMLEMRISNL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+++I A +ID S ++ + + V + + +Y IV + EA+ + G +S+++PI
Sbjct: 61 KDMIASARMIDESKINTNEVQILTRVKIKNTKTNQLMSYMIVSESEANFKEGKLSVTTPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++G+ +V+ P G +E++++
Sbjct: 121 AKGLLGKKVGERATVSVPSGMLEFEVMEI 149
>gi|289550623|ref|YP_003471527.1| Transcription elongation factor GreA [Staphylococcus lugdunensis
HKU09-01]
gi|315658118|ref|ZP_07910990.1| transcription elongation factor GreA [Staphylococcus lugdunensis
M23590]
gi|289180155|gb|ADC87400.1| Transcription elongation factor GreA [Staphylococcus lugdunensis
HKU09-01]
gi|315496447|gb|EFU84770.1| transcription elongation factor GreA [Staphylococcus lugdunensis
M23590]
Length = 158
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 89/141 (63%), Gaps = 1/141 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G+D ++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 8 PMTQEGYDNLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E+++ A +I+ T + + G TV+ VE ++++YQIVG EAD G +S SP
Sbjct: 68 IEHMLRYALIIE-DTGDNNVVQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISNESP 126
Query: 126 IARALIGKELGDIISVNAPGG 146
+A++LIGK L D + V P G
Sbjct: 127 MAKSLIGKGLNDEVRVQLPNG 147
>gi|229496616|ref|ZP_04390330.1| transcription elongation factor GreA [Porphyromonas endodontalis
ATCC 35406]
gi|229316513|gb|EEN82432.1| transcription elongation factor GreA [Porphyromonas endodontalis
ATCC 35406]
Length = 156
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 91/149 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T GFD++ E+ ++EERP I +AI+EAR GDLSENAEY AA+E Q L E ++++L
Sbjct: 6 MTQDGFDRLMDEISRLEREERPAIAQAIAEARDKGDLSENAEYDAAREAQGLLEAKISQL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +ID ST+ ++ V + + Y IV + +A+ + +S+++PI
Sbjct: 66 KTQAANTRIIDESTIDTSKVQLLTKVKVKRLDDNSIIEYTIVPEIDANFKERKLSVTAPI 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AR LIGK++G+I V P G +EIL++
Sbjct: 126 ARGLIGKKVGEIAEVQVPIGLLRFEILEI 154
>gi|150014996|ref|YP_001307250.1| transcription elongation factor GreA [Clostridium beijerinckii
NCIMB 8052]
gi|229485763|sp|A6LPL4|GREA_CLOB8 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|149901461|gb|ABR32294.1| transcription elongation factor GreA [Clostridium beijerinckii
NCIMB 8052]
Length = 160
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 88/149 (59%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EGR+ +L
Sbjct: 9 MTYEGVKKLESELEYLKTVKRKEITEKIKIALGYGDLSENSEYDEAKNDQAFTEGRIIQL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN++ A V+D S + D ++ G+ V + + ++ Y IVG EAD + +S SP+
Sbjct: 69 ENMLKNAVVVDESEIPSDIVSVGSKVKVKDYEFDEEVEYSIVGSAEADPMNFKISNESPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL+GK++GD++ V P G +EIL +
Sbjct: 129 GNALVGKKVGDVVEVTVPDGVNKFEILGI 157
>gi|163748836|ref|ZP_02156088.1| transcription elongation factor GreB [Shewanella benthica KT99]
gi|161331610|gb|EDQ02415.1| transcription elongation factor GreB [Shewanella benthica KT99]
Length = 161
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG+ + +EL++ +E RP+I K + EA A GD SENA+Y K L +GR+ L
Sbjct: 6 ITRKGWQALDKELKYLWKEYRPQITKKVQEAAAQGDRSENADYTYNKRLLRQIDGRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA + L E +GD Y+IVG E D + G ++I SP+
Sbjct: 66 VKRVEELKIVDYSPQQEGKVFFGAWIEL-ENEAGDVVQYRIVGKDELDTKLGYITIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARALIGK++ D I V P G K + +
Sbjct: 125 ARALIGKQVDDDIVVQTPSGSKEWYV 150
>gi|270291043|ref|ZP_06197266.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4]
gi|304385319|ref|ZP_07367664.1| transcription elongation factor GreA [Pediococcus acidilactici DSM
20284]
gi|270280439|gb|EFA26274.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4]
gi|304328526|gb|EFL95747.1| transcription elongation factor GreA [Pediococcus acidilactici DSM
20284]
Length = 154
Score = 105 bits (261), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 91/151 (60%), Gaps = 3/151 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+P+T G+ KIQQE+ ++ RP +IKA+++ARA GDLSENAEY AAK EGR+
Sbjct: 6 VPMTKTGYQKIQQEI-ADLKKTRPGLIKALADARALGDLSENAEYSAAKRDLRRMEGRLR 64
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE I +++++ + + +I G+ V+L + Y+IVG EADV VS S
Sbjct: 65 YLERQINYSKIVENTDRT--KIDLGSNVTLRFLDDDFTVTYEIVGKHEADVAQQKVSYQS 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ AL+ L D+++VNAP + EIL +
Sbjct: 123 PLGAALLHHHLHDVVTVNAPDEQYQVEILAI 153
>gi|293393396|ref|ZP_06637708.1| transcription elongation factor GreB [Serratia odorifera DSM 4582]
gi|291424133|gb|EFE97350.1| transcription elongation factor GreB [Serratia odorifera DSM 4582]
Length = 157
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 92/152 (60%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYDKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +++D S ++ FGA V VE + GD K ++IVG E + +SI SP+
Sbjct: 66 TKCLEQLKIVDYSPQQEGKVFFGAWVE-VENDDGDLKRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ K++GD VN P GE + + Q+ ++
Sbjct: 125 ARALLKKQVGDTAMVNTPAGEALWYVNQIEYV 156
>gi|237728725|ref|ZP_04559206.1| transcription elongation factor GreB [Citrobacter sp. 30_2]
gi|283835801|ref|ZP_06355542.1| hypothetical protein CIT292_10195 [Citrobacter youngae ATCC 29220]
gi|226909347|gb|EEH95265.1| transcription elongation factor GreB [Citrobacter sp. 30_2]
gi|291067966|gb|EFE06075.1| transcription elongation factor GreB [Citrobacter youngae ATCC
29220]
Length = 157
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 96/156 (61%), Gaps = 2/156 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + GD + ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGDIRKFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN PGGE ++ + ++ ++
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPGGEASWYVNEIEYV 156
>gi|261749563|ref|YP_003257249.1| transcription elongation factor [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497656|gb|ACX84106.1| transcription elongation factor [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 162
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K+QQE+ + ERP+I I+EAR GDLSENAEY A KE Q E +A+L
Sbjct: 9 ITKEGLKKLQQEIERLENIERPKISMQIAEARDKGDLSENAEYDAIKEAQEFLEMNIAKL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ A +ID S ++ R++ +TV + G ++ Y +V + EAD++SG +SI++PI
Sbjct: 69 KKKLSNARIIDGSQINRTRVSILSTVRVKNLTYGGEQIYTLVPEGEADLKSGKISINTPI 128
Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+ L+GK++G I + P YEIL++ +
Sbjct: 129 STGLLGKQVGQIAHIKLPNKMILDYEILEIAF 160
>gi|146319370|ref|YP_001199082.1| transcription elongation factor GreA [Streptococcus suis 05ZYH33]
gi|146321576|ref|YP_001201287.1| transcription elongation factor GreA [Streptococcus suis 98HAH33]
gi|253752398|ref|YP_003025539.1| transcription elongation factor [Streptococcus suis SC84]
gi|253754224|ref|YP_003027365.1| transcription elongation factor [Streptococcus suis P1/7]
gi|253756158|ref|YP_003029298.1| transcription elongation factor [Streptococcus suis BM407]
gi|166200976|sp|A4W3E8|GREA_STRS2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166201074|sp|A4VX43|GREA_STRSY RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|145690176|gb|ABP90682.1| Transcription elongation factor [Streptococcus suis 05ZYH33]
gi|145692382|gb|ABP92887.1| Transcription elongation factor [Streptococcus suis 98HAH33]
gi|251816687|emb|CAZ52328.1| transcription elongation factor [Streptococcus suis SC84]
gi|251818622|emb|CAZ56456.1| transcription elongation factor [Streptococcus suis BM407]
gi|251820470|emb|CAR47194.1| transcription elongation factor [Streptococcus suis P1/7]
gi|319758803|gb|ADV70745.1| transcription elongation factor GreA [Streptococcus suis JS14]
Length = 160
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP I++ I AR+YGDLSEN+EY+AAK+ Q EG+++ +E I AE+++ ++ D +
Sbjct: 28 RPEIVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISTIETKIRYAEIVNSDAVAADEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG ADV + +S SPI ALIGK+ GD+ ++ P G
Sbjct: 88 AIGKTVTVQEVGETEEEVYHIVGAAGADVFANKISNESPIGHALIGKKTGDVATIETPAG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|148381460|ref|YP_001256001.1| transcription elongation factor GreA [Clostridium botulinum A str.
ATCC 3502]
gi|153933740|ref|YP_001385835.1| transcription elongation factor GreA [Clostridium botulinum A str.
ATCC 19397]
gi|153937864|ref|YP_001389242.1| transcription elongation factor GreA [Clostridium botulinum A str.
Hall]
gi|229485762|sp|A7FZA6|GREA_CLOB1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|229485764|sp|A5I7P5|GREA_CLOBH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|148290944|emb|CAL85080.1| transcription elongation factor [Clostridium botulinum A str. ATCC
3502]
gi|152929784|gb|ABS35284.1| transcription elongation factor GreA [Clostridium botulinum A str.
ATCC 19397]
gi|152933778|gb|ABS39277.1| transcription elongation factor GreA [Clostridium botulinum A str.
Hall]
Length = 160
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 90/152 (59%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR+
Sbjct: 6 KYVMTYEGVKKLEEELEFLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEGRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S
Sbjct: 66 IQLENMLKNASIVDENEVPKDVVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKISNE 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ LIGK+ GDII V P G YEIL+V
Sbjct: 126 SPVGHGLIGKKAGDIIEVAVPDGVSKYEILEV 157
>gi|188590469|ref|YP_001919617.1| transcription elongation factor GreA [Clostridium botulinum E3 str.
Alaska E43]
gi|251779196|ref|ZP_04822116.1| transcription elongation factor GreA [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|238689627|sp|B2UXU9|GREA_CLOBA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|188500750|gb|ACD53886.1| transcription elongation factor GreA [Clostridium botulinum E3 str.
Alaska E43]
gi|243083511|gb|EES49401.1| transcription elongation factor GreA [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 160
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 89/149 (59%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EG++ +L
Sbjct: 9 MTYEGVKKLEGELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAFTEGKILQL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN + A V+D S + D ++ G+ V + + + ++ Y IVG EAD S +S SP+
Sbjct: 69 ENKLKNAVVVDESEIPKDIVSVGSKVKVKDYDFDEEVEYSIVGSAEADPMSFKISNESPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GK++GDI+ V P G +EIL +
Sbjct: 129 GKALVGKKIGDIVDVVVPDGISKFEILDI 157
>gi|291530006|emb|CBK95591.1| transcription elongation factor GreA [Eubacterium siraeum 70/3]
Length = 156
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 94/155 (60%), Gaps = 1/155 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +TS+G +++ L + R I + I A ++GDLSEN+EY AK Q + E
Sbjct: 1 MATQTTLTSQGLKDLEERLEHLKSVTRKEIAEKIKVALSFGDLSENSEYDEAKNEQGIVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+AE+E + A+V+D +S + + G TV ++E SG K + +VG +E D+++ +
Sbjct: 61 AEIAEIEATLKNAKVVDEDELSTEHVNIGNTV-VIEDESGKKIKFFLVGSKEVDMKAMKI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +A IGK+LG+ +SV AP G K Y+I+++
Sbjct: 120 SDESPIGKACIGKKLGEEVSVEAPAGVKKYKIVEI 154
>gi|295696559|ref|YP_003589797.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912]
gi|295412161|gb|ADG06653.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912]
Length = 158
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 89/149 (59%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K+++EL W + E+R + + + AR+YGDLSEN+EY AAKE Q E R+ +L
Sbjct: 9 MTEEGLRKLKEELEWLKTEKRAEVKERLKIARSYGDLSENSEYDAAKEEQAFVESRILQL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ I RA++I ++ G+TV++ E G ++ Y IVG EAD +S SPI
Sbjct: 69 EDQIRRAKIIREEDRVEGVVSIGSTVTIRELPDGPEETYTIVGTAEADPGKFRISNESPI 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
L+G+ G+ + + P GE + ILQ+
Sbjct: 129 GAGLLGRRAGEEVGIQTPAGEILFRILQI 157
>gi|329769158|ref|ZP_08260578.1| transcription elongation factor greA [Gemella sanguinis M325]
gi|328839377|gb|EGF88955.1| transcription elongation factor greA [Gemella sanguinis M325]
Length = 162
Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 90/140 (64%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D++ +EL ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+ E+
Sbjct: 11 MTQEGYDQLVEELEHYKKVKRPEVIEKIKVARSFGDLSENSEYDAAKDEQGFIEQRILEM 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A +I++ S I G TV+ E +G + Y+IVG EA+ +S SP+
Sbjct: 71 EQMIRYAVIIELDEKSS-AIRLGNTVTYQELPNGATETYKIVGSAEANPFEYKISNESPV 129
Query: 127 ARALIGKELGDIISVNAPGG 146
A+AL+GKE+GD+ V+ P G
Sbjct: 130 AQALLGKEVGDVAKVSLPTG 149
>gi|313623703|gb|EFR93852.1| transcription elongation factor GreA [Listeria innocua FSL J1-023]
Length = 175
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 91/151 (60%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+
Sbjct: 22 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 81
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+EN A++ID + + G TV+ +E G+++ Y IVG EAD G +S S
Sbjct: 82 TIENXXXNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 141
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA+ L+G + G+ +++ P G+ + +I ++
Sbjct: 142 PIAKGLLGHKEGEEVTIQTPAGDMSVKIEKI 172
>gi|312879693|ref|ZP_07739493.1| transcription elongation factor GreA [Aminomonas paucivorans DSM
12260]
gi|310782984|gb|EFQ23382.1| transcription elongation factor GreA [Aminomonas paucivorans DSM
12260]
Length = 153
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 94/149 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QEL + + R I + EARA+GDLSENAEY AAKE Q E R+ L
Sbjct: 2 MTREGYEKLKQELISLRGDGRSEIAAKLEEARAFGDLSENAEYHAAKEEQEKLESRILWL 61
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +++ ++++ + ++ G TVSL + ++ + Y +VG +EAD ++ +S SP+
Sbjct: 62 EYQLSKTRIVEVGDLDTSSVSLGTTVSLRDLDAQTQYTYTLVGSEEADPKTNRISSQSPV 121
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++GK +G+ + V P G + ++L++
Sbjct: 122 GKAILGKTVGEEVMVRVPKGVRHLKVLEI 150
>gi|312128202|ref|YP_003993076.1| grea/greb family elongation factor [Caldicellulosiruptor
hydrothermalis 108]
gi|312793713|ref|YP_004026636.1| transcription elongation factor grea [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312877911|ref|ZP_07737855.1| transcription elongation factor GreA [Caldicellulosiruptor
lactoaceticus 6A]
gi|311778221|gb|ADQ07707.1| GreA/GreB family elongation factor [Caldicellulosiruptor
hydrothermalis 108]
gi|311795303|gb|EFR11688.1| transcription elongation factor GreA [Caldicellulosiruptor
lactoaceticus 6A]
gi|312180853|gb|ADQ41023.1| transcription elongation factor GreA [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 162
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 93/152 (61%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+
Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAALEERI 68
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A LE +I A++ID +S D + G V + ++GD Y IVG +EAD + +S
Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDVFEYSIVGSKEADPLNFKISDE 128
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +AL+GK++GD++ V+ P G+ Y+IL++
Sbjct: 129 SPVGKALMGKKVGDVVEVSVPAGKFRYKILEI 160
>gi|51894292|ref|YP_076983.1| transcription elongation factor [Symbiobacterium thermophilum IAM
14863]
gi|51857981|dbj|BAD42139.1| transcription elongation factor [Symbiobacterium thermophilum IAM
14863]
Length = 157
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 87/145 (60%)
Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
G +++QEL + + +R + + I +AR YGD+SEN+EY+ AK Q EGR+ LE ++
Sbjct: 12 GLKQLEQELLYLRTVKRMEVAERIKQAREYGDISENSEYEDAKNEQAFIEGRILVLEKML 71
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
A VID + + G+TV L + GD+ Y IVG EAD +S SP+ RA+
Sbjct: 72 RNARVIDEPVGQQEVVVLGSTVVLRDLEYGDEHTYTIVGTTEADPAHNRISNESPVGRAI 131
Query: 131 IGKELGDIISVNAPGGEKTYEILQV 155
+G+ +G +++V+AP G YEI+ +
Sbjct: 132 MGQRVGTVVAVDAPDGVFKYEIVAI 156
>gi|294102451|ref|YP_003554309.1| transcription elongation factor GreA [Aminobacterium colombiense
DSM 12261]
gi|293617431|gb|ADE57585.1| transcription elongation factor GreA [Aminobacterium colombiense
DSM 12261]
Length = 163
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 93/154 (60%), Gaps = 1/154 (0%)
Query: 3 DKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
D PV T G++K+ EL + + R I + + EAR++GDLSENAEY AAK+ Q+ E
Sbjct: 7 DGAPVMTRSGYEKLTAELVELRSDGRAEISRQLEEARSFGDLSENAEYAAAKDEQSKLES 66
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ LE +++A+VID S + R+ G TV++ + Y +VG +EAD + +S
Sbjct: 67 RISWLEFQLSKAKVIDTSDVDTSRVTLGTTVTIEDITHKKVFTYTVVGSEEADPKMNHIS 126
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SSP+ +AL GK +G+ + V P G + +I+ +
Sbjct: 127 SSSPVGKALFGKTIGEEVQVKVPRGIRNLKIVSI 160
>gi|296131771|ref|YP_003639018.1| GreA/GreB family elongation factor [Thermincola sp. JR]
gi|296030349|gb|ADG81117.1| GreA/GreB family elongation factor [Thermincola potens JR]
Length = 158
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K + +T G K++ EL + +R + + I +A +GD+SEN+EY+ AK Q
Sbjct: 1 MVEKEVILTLDGLKKLEHELEQLKTVKRREVAERIKQAIEFGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A VID + D ++ G+TV L + GD+ Y IVG EAD +
Sbjct: 61 EGRILTLEKMLRNARVIDEGDVHTDVVSIGSTVLLKDLEFGDEIAYTIVGSAEADPSANK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +AL+G++ G+II VN P G Y+I+ +
Sbjct: 121 ISNESPVGKALLGQKTGEIIEVNVPAGTLKYQIMGI 156
>gi|320109162|ref|YP_004184752.1| GreA/GreB family elongation factor [Terriglobus saanensis SP1PR4]
gi|319927683|gb|ADV84758.1| GreA/GreB family elongation factor [Terriglobus saanensis SP1PR4]
Length = 157
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 90/145 (62%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
K++++++ + E + I A A GDLSENAEY +AK+ Q + +L+ +
Sbjct: 8 KLEEQIKQLEYELTNELPAEIKRAVALGDLSENAEYHSAKQRQEFVNAHLGQLKKRMAEL 67
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+++++ + DRI FG+T+ + + ++ Y++V +E+DV GL+S +SPI R+L+GK
Sbjct: 68 SLVNLANIPHDRIGFGSTIVVFDTTKNEELTYKLVTSEESDVTQGLISTTSPIGRSLVGK 127
Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158
++GD ++V P G++ E+L++ I
Sbjct: 128 QVGDTVTVVTPNGKRELEVLKLTTI 152
>gi|257440517|ref|ZP_05616272.1| transcription elongation factor GreA [Faecalibacterium prausnitzii
A2-165]
gi|257197021|gb|EEU95305.1| transcription elongation factor GreA [Faecalibacterium prausnitzii
A2-165]
Length = 161
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/156 (38%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +++ G +Q EL + + R + + I EAR++GDLSEN+EY AK Q L E
Sbjct: 1 MAQEIKMSASGLKAMQDELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE ++ A +ID S +S D +A G VS+ + + Y IVG EAD +G +
Sbjct: 61 NRITELEQMVKNAVIIDESELSVDSVAVGTHVSIKMIGDDEAEEYDIVGRTEADPINGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155
S SP+ AL+GK +G+ V P G+ YE+L +
Sbjct: 121 SDESPVGHALLGKAVGEKAEVLLPSGQIVEYEVLAI 156
>gi|217077586|ref|YP_002335304.1| transcription elongation factor GreA [Thermosipho africanus TCF52B]
gi|226737011|sp|B7ID86|GREA_THEAB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|217037441|gb|ACJ75963.1| transcription elongation factor GreA [Thermosipho africanus TCF52B]
Length = 156
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 95/153 (62%), Gaps = 2/153 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ I +T +G++K++ EL +Q+ I + I EAR GDLSEN+EYQ AK Q R
Sbjct: 4 ESIYLTKEGYEKLKAELDQLKQKLMFEIAQRIKEARELGDLSENSEYQEAKNEQGRIAAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELEN++++AEVI+ + + I G V + ++G++K QIV EADV + +S
Sbjct: 64 INELENMLSKAEVIE--GLDTNVINIGNWVLIKNLDTGEEKTIQIVTPHEADVFNNKISF 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPI R L+GK++G+++ + AP G Y+IL +
Sbjct: 122 ESPIGRVLVGKKVGEVVKIKAPKGVFKYQILGI 154
>gi|222528673|ref|YP_002572555.1| transcription elongation factor GreA [Caldicellulosiruptor bescii
DSM 6725]
gi|312623018|ref|YP_004024631.1| transcription elongation factor grea [Caldicellulosiruptor
kronotskyensis 2002]
gi|222455520|gb|ACM59782.1| transcription elongation factor GreA [Caldicellulosiruptor bescii
DSM 6725]
gi|312203485|gb|ADQ46812.1| transcription elongation factor GreA [Caldicellulosiruptor
kronotskyensis 2002]
Length = 162
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 93/152 (61%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+
Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAALEERI 68
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A LE +I A++ID +S D + G V + ++GD Y IVG +EAD + +S
Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDIFEYSIVGSKEADPLNFKISDE 128
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +AL+GK++GD++ V+ P G+ Y+IL++
Sbjct: 129 SPVGKALMGKKVGDVVEVSVPAGKFRYKILEI 160
>gi|319946449|ref|ZP_08020686.1| transcription elongation factor GreA [Streptococcus australis ATCC
700641]
gi|319747417|gb|EFV99673.1| transcription elongation factor GreA [Streptococcus australis ATCC
700641]
Length = 160
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 81/129 (62%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE++D ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVDSDAVAVDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E ++ Y IVG AD +G +S SPI ALIGK+ GD +++ P G
Sbjct: 88 AIGKTVTVQEIGEDEEDVYIIVGSAGADAFAGKISNESPIGHALIGKKTGDTVTIETPAG 147
Query: 147 EKTYEILQV 155
+IL V
Sbjct: 148 SYQVKILNV 156
>gi|322386974|ref|ZP_08060598.1| transcription elongation factor GreA [Streptococcus cristatus ATCC
51100]
gi|321269256|gb|EFX52192.1| transcription elongation factor GreA [Streptococcus cristatus ATCC
51100]
Length = 187
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 84/129 (65%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I A ++D +++ D +
Sbjct: 55 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAVIVDSDSVAKDEV 114
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GDI +V P G
Sbjct: 115 AIGKTVTIQEVGETEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDIATVETPVG 174
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 175 SYDVKILKV 183
>gi|308047929|ref|YP_003911495.1| transcription elongation factor GreB [Ferrimonas balearica DSM
9799]
gi|307630119|gb|ADN74421.1| transcription elongation factor GreB [Ferrimonas balearica DSM
9799]
Length = 161
Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++ ++ EL++ +EERPR+ +++SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITKDGWNALEAELKYLWKEERPRVTQSVSEAAALGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V++ ++ FGA V L E + GDKK Y++VG E DV+ G +SI SP+
Sbjct: 67 SKRMEVLRVVEPDPRQEGKVYFGAWVEL-ENDDGDKKRYRLVGPDEFDVKVGKISIDSPL 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+GK + D + V P G++ + I ++ +
Sbjct: 126 ARALLGKAVDDEVKVRTPNGDQLFYINEIRY 156
>gi|326798984|ref|YP_004316803.1| transcription elongation factor GreA [Sphingobacterium sp. 21]
gi|326549748|gb|ADZ78133.1| transcription elongation factor GreA [Sphingobacterium sp. 21]
Length = 157
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 99/155 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D + +G +K+++EL++ + E R I +AI+EAR GDLSENAEY AAKE Q L+E
Sbjct: 1 MADVTYYSKEGLEKLKEELQYLKTEGRAAIARAIAEARDKGDLSENAEYDAAKEAQGLHE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE ++ A +ID S + ++ + V L +G YQ+V + EAD++SG +
Sbjct: 61 AKIAKLEEVLANARLIDESKLDVTKVLALSIVKLKNTKNGAIMTYQLVSETEADLKSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S+ SPIA+ L+GK +GD + P G+ EIL++
Sbjct: 121 SVKSPIAQGLLGKSVGDKAEIEVPAGKIELEILEI 155
>gi|237807290|ref|YP_002891730.1| transcription elongation factor GreB [Tolumonas auensis DSM 9187]
gi|237499551|gb|ACQ92144.1| transcription elongation factor GreB [Tolumonas auensis DSM 9187]
Length = 161
Score = 104 bits (259), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 96/150 (64%), Gaps = 3/150 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T G+ K++ EL++ + +RP + +A+SEA A GD SENAEY+ K EL++++ R+
Sbjct: 6 ITRAGWQKLEDELKYLWKVKRPEVTQAVSEAAALGDRSENAEYKEGKRELRSIDR-RLRF 64
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + ++++ S ++ FGA V L E + GD +Y+IVG E D ++ ++I SP
Sbjct: 65 LTKRLDALKIVEYSPQQEGKVYFGAWVEL-ENDQGDIVHYRIVGTDEIDTKNNYITIDSP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ARALIGK++ D + VN P GEK + I ++
Sbjct: 124 MARALIGKQVDDEVRVNTPSGEKEWFINKI 153
>gi|308234247|ref|ZP_07664984.1| GreA/GreB family elongation factor [Atopobium vaginae DSM 15829]
gi|328943529|ref|ZP_08240994.1| transcription elongation factor GreA [Atopobium vaginae DSM 15829]
gi|327491498|gb|EGF23272.1| transcription elongation factor GreA [Atopobium vaginae DSM 15829]
Length = 157
Score = 103 bits (258), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 90/150 (60%), Gaps = 3/150 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K+ EL +R+ E+ I++ + EAR +GDLSEN+EY AAKE Q+LNE R+ E+
Sbjct: 8 LTPEGRQKLVDELAYREGEKHEEIVERLKEARGFGDLSENSEYDAAKEEQSLNESRINEI 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I+ A+V++ T ++ G TV L +K G ++ IVG E D +S SP
Sbjct: 68 RQILATAKVVE-HTDGELSVSIGTTVELSDKK-GKSISFTIVGTTETDSLEHKISNESPA 125
Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQV 155
LIG +GD++S + P G EKTY IL +
Sbjct: 126 GAELIGHVVGDVVSFSTPSGKEKTYTILNI 155
>gi|157363383|ref|YP_001470150.1| transcription elongation factor GreA [Thermotoga lettingae TMO]
gi|157313987|gb|ABV33086.1| transcription elongation factor GreA [Thermotoga lettingae TMO]
Length = 163
Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T +G+++++QEL +Q+ I + I EAR GDLSEN EY AK Q R+
Sbjct: 7 IYLTKEGYEELKQELDSLKQKLMYEISERIKEARELGDLSENTEYDEAKNEQGRIGSRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELE I+ +E+I+ ++I+ G+ V + N+G++++ ++V QEAD+ S +S+ S
Sbjct: 67 ELEQILNNSEIIE--NTDSNQISVGSYVIIKNLNTGEERSVRLVNPQEADIFSNKISVDS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ RAL+G+++G+++ + AP G YEIL +
Sbjct: 125 PVGRALMGRKVGEVVKLKAPAGSVRYEILGI 155
>gi|294673245|ref|YP_003573861.1| transcription elongation factor GreA family protein [Prevotella
ruminicola 23]
gi|294472262|gb|ADE81651.1| transcription elongation factor GreA family protein [Prevotella
ruminicola 23]
Length = 155
Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 83/140 (59%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ EL+ + + P AISEAR GDLSEN EY AAK Q GR++ L
Sbjct: 4 MSQEGWDKLVAELKQLETVDLPACKDAISEARDKGDLSENFEYHAAKREQGRLLGRISFL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ A VID S + D + + V + N+ K Y I EA+++ G +SI SPI
Sbjct: 64 QKVLENARVIDTSLLGKDCVGLLSKVEMTNLNNNAKMTYTIASPHEANLREGKISIKSPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+AL+ K++GD++ V P G
Sbjct: 124 AQALLNKKVGDVVEVRVPAG 143
>gi|332828969|gb|EGK01647.1| hypothetical protein HMPREF9455_02058 [Dysgonomonas gadei ATCC
BAA-286]
Length = 155
Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ K+++E+ + E RP I K I+EAR GDLSENAEY AAKE Q L E ++A++
Sbjct: 6 MTEDGYKKLKEEISALESE-RPAISKQIAEARDKGDLSENAEYDAAKEAQGLLEAKIAQM 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+N++ A +I+ + D + V++ + + Y +V + EA+++ +++S+P+
Sbjct: 65 KNLLANARIINEEAIGIDVVQILNKVTIRNTKNNQQMTYTLVAESEANLKENKIAVSTPV 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK++GD+ + P G ++EI+ +
Sbjct: 125 AQGLMGKKVGDVAEIKVPSGMMSFEIVNI 153
>gi|270292312|ref|ZP_06198523.1| transcription elongation factor GreA [Streptococcus sp. M143]
gi|315613482|ref|ZP_07888390.1| transcription elongation factor GreA [Streptococcus sanguinis ATCC
49296]
gi|322375565|ref|ZP_08050077.1| transcription elongation factor GreA [Streptococcus sp. C300]
gi|331266043|ref|YP_004325673.1| transcription elongation factor GreA [Streptococcus oralis Uo5]
gi|270278291|gb|EFA24137.1| transcription elongation factor GreA [Streptococcus sp. M143]
gi|315314478|gb|EFU62522.1| transcription elongation factor GreA [Streptococcus sanguinis ATCC
49296]
gi|321279273|gb|EFX56314.1| transcription elongation factor GreA [Streptococcus sp. C300]
gi|326682715|emb|CBZ00332.1| transcription elongation factor GreA [Streptococcus oralis Uo5]
Length = 160
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD +G VS SPI RALIGK+ GD ++ P G
Sbjct: 88 AIGKTVTIQEVGEDEEEVYIIVGSAGADAFAGKVSNESPIGRALIGKKTGDTATIETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|293365798|ref|ZP_06612504.1| transcription elongation factor GreA [Streptococcus oralis ATCC
35037]
gi|307703334|ref|ZP_07640278.1| transcription elongation factor GreA [Streptococcus oralis ATCC
35037]
gi|291315731|gb|EFE56178.1| transcription elongation factor GreA [Streptococcus oralis ATCC
35037]
gi|307623110|gb|EFO02103.1| transcription elongation factor GreA [Streptococcus oralis ATCC
35037]
Length = 160
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD +G VS SPI RALIGK+ GD ++ P G
Sbjct: 88 AIGKTVTIQEVGEDEEEVYIIVGSAGADAFAGKVSNESPIGRALIGKKTGDTATIETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYEVKILKV 156
>gi|157693131|ref|YP_001487593.1| transcription elongation factor GreA [Bacillus pumilus SAFR-032]
gi|189042234|sp|A8FFL6|GREA_BACP2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|157681889|gb|ABV63033.1| transcription elongation factor [Bacillus pumilus SAFR-032]
Length = 157
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 54/130 (41%), Positives = 88/130 (67%), Gaps = 1/130 (0%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
+R +++ I AR++GDLSEN+EY +AKE Q EGR+ L+N+I A++I+ S +
Sbjct: 28 KRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRITTLDNMIRNAKIIEDEGNS-NI 86
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
++ G TV+ VE G++++Y IVG EAD G +S SPIA++L+GK++ D ++V PG
Sbjct: 87 VSLGKTVTFVELPDGEEESYTIVGSAEADPFEGKISNDSPIAKSLLGKQVDDKVTVQTPG 146
Query: 146 GEKTYEILQV 155
GE +I+++
Sbjct: 147 GEMFVQIVKI 156
>gi|261344526|ref|ZP_05972170.1| transcription elongation factor GreB [Providencia rustigianii DSM
4541]
gi|282567439|gb|EFB72974.1| transcription elongation factor GreB [Providencia rustigianii DSM
4541]
Length = 161
Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D + +EL++ +EERPR+ +++SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREIDRRIRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +++ R+ FGA V L E ++G+ + +++VG E D +SI SP+
Sbjct: 67 SKRLDQLRIVEPDPRQEGRVFFGAWVKL-EDDNGNIRIFRLVGADEFDPAKQWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK + D + V+ PGG+ TY +L++
Sbjct: 126 ARALIGKRVDDEVVVSTPGGQVTYFVLEI 154
>gi|282881506|ref|ZP_06290176.1| putative transcription elongation factor GreA [Prevotella
timonensis CRIS 5C-B1]
gi|281304617|gb|EFA96707.1| putative transcription elongation factor GreA [Prevotella
timonensis CRIS 5C-B1]
Length = 154
Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 89/149 (59%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ EL+ + E PR+ AI+EAR GDLSEN EY AAK Q R+
Sbjct: 4 MSQEGYDKLVAELKQLETIELPRVRDAIAEARDKGDLSENFEYHAAKREQGRLLSRIRFK 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ A VID S +S D++ + V++ + K Y+IV EA+++ G +SI SPI
Sbjct: 64 QKVLEFARVIDTSRLSADKVGLLSKVTITNLGNKAKMTYRIVSAHEANMREGKISIHSPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+AL+ K+ GD ++V P G T I +V
Sbjct: 124 AQALLDKKQGDEVTVRVPAGTITLHIDEV 152
>gi|332638064|ref|ZP_08416927.1| transcription elongation factor GreA [Weissella cibaria KACC 11862]
Length = 161
Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 86/142 (60%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G KI++EL E R I I AR++GDLSEN+EYQ+AK+ Q EGR+
Sbjct: 7 FPMTVEGKAKIEEELNTLITETRAEITGRIQIARSFGDLSENSEYQSAKDEQAFVEGRIN 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L+N++ A +ID S ++ D ++ G V+ E + + Y IVG EA+ G +S S
Sbjct: 67 TLQNMLDNAVIIDSSEIADDEVSVGKKVTFKELPDEEPETYAIVGAVEANPLEGKISNES 126
Query: 125 PIARALIGKELGDIISVNAPGG 146
PIA AL+GK++GD + V P G
Sbjct: 127 PIAVALMGKKVGDQVEVPLPNG 148
>gi|317505048|ref|ZP_07962995.1| transcription elongation factor GreA [Prevotella salivae DSM 15606]
gi|315663826|gb|EFV03546.1| transcription elongation factor GreA [Prevotella salivae DSM 15606]
Length = 156
Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 89/140 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ ++
Sbjct: 4 MSQEGYDKLVAELKRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLESKINKM 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A+++D+S +S D + + V + ++ K Y IV + EA+++ G +SI +PI
Sbjct: 64 KLDIAEAKIVDVSRLSADAVQIMSKVEMTNMSNKSKMVYTIVSESEANLKQGKISIKTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ ++GD++ V P G
Sbjct: 124 AQGLLNHKVGDVVEVQIPRG 143
>gi|167751089|ref|ZP_02423216.1| hypothetical protein EUBSIR_02074 [Eubacterium siraeum DSM 15702]
gi|167656007|gb|EDS00137.1| hypothetical protein EUBSIR_02074 [Eubacterium siraeum DSM 15702]
Length = 156
Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 94/155 (60%), Gaps = 1/155 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +TS+G +++ L + R I + I A ++GDLSEN+EY AK Q + E
Sbjct: 1 MATQTTLTSQGLKDLEERLEHLKSVTRKEIAEKIKVALSFGDLSENSEYDEAKNEQGIVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+AE+E + A+V+D +S + + G TV ++E SG K + +VG +E D+++ +
Sbjct: 61 AEIAEIEATLKNAKVVDEDELSTEHVNIGNTV-VIEDESGKKIKFFLVGSKEVDMKAMKI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +A IG++LG+ +SV AP G K Y+I+++
Sbjct: 120 SDESPIGKACIGRKLGEEVSVEAPAGVKKYKIVEI 154
>gi|188025404|ref|ZP_02958495.2| hypothetical protein PROSTU_00233 [Providencia stuartii ATCC 25827]
gi|188023657|gb|EDU61697.1| hypothetical protein PROSTU_00233 [Providencia stuartii ATCC 25827]
Length = 164
Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D + +EL++ +EERPR+ +++SEA A GD SENAEY K+ + R+ L
Sbjct: 10 ITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREIDRRVRFL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +++ R+ FGA V L E ++ + + +++VG E + +SI SP+
Sbjct: 70 SKRLDQLRIVEPDPRQEGRVFFGAWVKL-EDDNENIRIFRLVGADEFNPSKNWISIDSPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+GK++ D I+VN PGG TY +L++
Sbjct: 129 ARALVGKQVDDEITVNTPGGRVTYTVLEI 157
>gi|47093417|ref|ZP_00231182.1| transcription elongation factor GreA [Listeria monocytogenes str.
4b H7858]
gi|300764839|ref|ZP_07074829.1| transcription elongation factor GreA [Listeria monocytogenes FSL
N1-017]
gi|47018196|gb|EAL08964.1| transcription elongation factor GreA [Listeria monocytogenes str.
4b H7858]
gi|300514515|gb|EFK41572.1| transcription elongation factor GreA [Listeria monocytogenes FSL
N1-017]
Length = 152
Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 92/149 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ +
Sbjct: 1 MTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRITTI 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S SPI
Sbjct: 61 ENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+G + G+ +++ P G+ + +I ++
Sbjct: 121 AKGLLGHKEGEEVTIQTPAGDMSVKIEKI 149
>gi|283787960|ref|YP_003367825.1| transcription elongation factor [Citrobacter rodentium ICC168]
gi|282951414|emb|CBG91113.1| transcription elongation factor [Citrobacter rodentium ICC168]
Length = 157
Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 91/150 (60%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + GD + ++IVG E + +SI
Sbjct: 62 VRYLTKCMEHLKIVDYSPQQEGKVFFGAWVE-IENDDGDTRRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150
>gi|315925853|ref|ZP_07922059.1| transcription elongation factor GreA [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315620817|gb|EFV00792.1| transcription elongation factor GreA [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 165
Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 4/155 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++ VT +G +K++ EL + R +I+ + AR YGDLSEN+EY AK Q+ E
Sbjct: 13 MSEEMIVTQEGLEKMKAELEQLKTVTRYEVIEKLRTARGYGDLSENSEYDEAKNEQSFVE 72
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE+ I +V++ + D + G+ V + +G YQIVG EA+++ G +
Sbjct: 73 GRIKELEHQIHHVKVVE--EVQTDVVGIGSYVKVA--TAGKNLEYQIVGSAEANIKEGKL 128
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S +SP+ L+G + GD++ + P G TYEIL +
Sbjct: 129 SNASPVGEGLMGCQAGDVVEIEVPRGVVTYEILDI 163
>gi|309798572|ref|ZP_07692847.1| transcription elongation factor GreA [Streptococcus infantis
SK1302]
gi|308117808|gb|EFO55209.1| transcription elongation factor GreA [Streptococcus infantis
SK1302]
Length = 160
Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E D++ Y IVG AD +G VS SPI +ALIGK+ GD ++ P G
Sbjct: 88 AIGKTVTIQEIGEDDEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|225375161|ref|ZP_03752382.1| hypothetical protein ROSEINA2194_00785 [Roseburia inulinivorans DSM
16841]
gi|225213035|gb|EEG95389.1| hypothetical protein ROSEINA2194_00785 [Roseburia inulinivorans DSM
16841]
Length = 159
Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 91/149 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL+ + R + I EAR GDLSENAEY AAK+ Q E R+ ++
Sbjct: 7 LTYQGLKKLEDELQELKVVRRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEDI 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + D+I+ G V +++ ++ Y+IVG EA+ G +S SP+
Sbjct: 67 EKILKNAEVVVEEEVDLDKISIGCNVKILDIEFDEELEYKIVGSTEANSLKGKISNESPV 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GK++GDI+ V PGGE Y++L +
Sbjct: 127 GKALLGKQVGDIVKVETPGGEFEYKVLSI 155
>gi|156936432|ref|YP_001440348.1| transcription elongation factor GreB [Cronobacter sakazakii ATCC
BAA-894]
gi|260599707|ref|YP_003212278.1| transcription elongation factor GreB [Cronobacter turicensis z3032]
gi|156534686|gb|ABU79512.1| hypothetical protein ESA_04333 [Cronobacter sakazakii ATCC BAA-894]
gi|260218884|emb|CBA34239.1| Transcription elongation factor greB [Cronobacter turicensis z3032]
Length = 157
Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 91/150 (60%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYEKLKKELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V VE + GD K ++IVG E + +SI
Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-VENDDGDVKRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE GD+ +V PGGE T+ +
Sbjct: 121 DSPMARALLKKEEGDVATVQTPGGEATWYV 150
>gi|306829823|ref|ZP_07463010.1| transcription elongation factor GreA [Streptococcus mitis ATCC
6249]
gi|304427834|gb|EFM30927.1| transcription elongation factor GreA [Streptococcus mitis ATCC
6249]
Length = 160
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVALDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E D++ Y IVG AD +G VS SPI +ALIGK+ GD ++ P G
Sbjct: 88 AIGKTVTIQEVGEDDEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYQVKILKV 156
>gi|125718595|ref|YP_001035728.1| transcription elongation factor GreA [Streptococcus sanguinis SK36]
gi|323351003|ref|ZP_08086660.1| transcription elongation factor GreA [Streptococcus sanguinis
VMC66]
gi|166200977|sp|A3CPS3|GREA_STRSV RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|125498512|gb|ABN45178.1| Transcription elongation factor GreA, putative [Streptococcus
sanguinis SK36]
gi|322122727|gb|EFX94436.1| transcription elongation factor GreA [Streptococcus sanguinis
VMC66]
gi|324991292|gb|EGC23225.1| transcription elongation factor GreA [Streptococcus sanguinis
SK353]
gi|324993649|gb|EGC25568.1| transcription elongation factor GreA [Streptococcus sanguinis
SK405]
gi|324995039|gb|EGC26952.1| transcription elongation factor GreA [Streptococcus sanguinis
SK678]
gi|325687131|gb|EGD29154.1| transcription elongation factor GreA [Streptococcus sanguinis SK72]
gi|325690939|gb|EGD32939.1| transcription elongation factor GreA [Streptococcus sanguinis
SK115]
gi|325695125|gb|EGD37027.1| transcription elongation factor GreA [Streptococcus sanguinis
SK150]
gi|327462918|gb|EGF09239.1| transcription elongation factor GreA [Streptococcus sanguinis SK1]
gi|327470408|gb|EGF15864.1| transcription elongation factor GreA [Streptococcus sanguinis
SK330]
gi|327474522|gb|EGF19927.1| transcription elongation factor GreA [Streptococcus sanguinis
SK408]
gi|327490078|gb|EGF21866.1| transcription elongation factor GreA [Streptococcus sanguinis
SK1058]
gi|332359138|gb|EGJ36959.1| transcription elongation factor GreA [Streptococcus sanguinis SK49]
gi|332367391|gb|EGJ45124.1| transcription elongation factor GreA [Streptococcus sanguinis
SK1059]
Length = 160
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAKDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD +V P G
Sbjct: 88 AIGKTVTIQEVGESEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATVETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|126172390|ref|YP_001048539.1| transcription elongation factor GreB [Shewanella baltica OS155]
gi|125995595|gb|ABN59670.1| transcription elongation factor GreB [Shewanella baltica OS155]
Length = 169
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L +GR+ L
Sbjct: 8 ITRQGWQTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDGRVRYL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S +I FGA L E +GD+ Y+IVG E D + G ++I SP+
Sbjct: 68 VKRLEELKIVDYSPQQEGKIFFGAWFEL-ENEAGDRVRYRIVGKDELDTKLGYITIDSPM 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D + V P G K + I Q+
Sbjct: 127 ARALIGKQVDDEVVVQTPSGPKEWYINQI 155
>gi|289522343|ref|ZP_06439197.1| transcription elongation factor GreA [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289504179|gb|EFD25343.1| transcription elongation factor GreA [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 164
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 93/153 (60%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D I +T +G+ K++ EL + E R I + + EAR++GDLSENAEY AAKE Q E R
Sbjct: 10 DVILMTREGYQKLRAELIKLRSEGRSEISQQLEEARSFGDLSENAEYHAAKEAQAKLEAR 69
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +LE +++A+VI+ + ++ G V+L + + + Y IV +E D + +S+
Sbjct: 70 IQQLETQLSKAKVIENDQIDTSQVTLGTKVTLKDLDLNREFTYVIVNSEETDPNNHKISV 129
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SSP+ +A+IGK +GD + AP G + +IL +
Sbjct: 130 SSPVGQAIIGKSVGDEVIARAPRGVRRLKILNI 162
>gi|153002701|ref|YP_001368382.1| transcription elongation factor GreB [Shewanella baltica OS185]
gi|160877437|ref|YP_001556753.1| transcription elongation factor GreB [Shewanella baltica OS195]
gi|217975274|ref|YP_002360025.1| transcription elongation factor GreB [Shewanella baltica OS223]
gi|304412250|ref|ZP_07393858.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
gi|307306034|ref|ZP_07585779.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
gi|151367319|gb|ABS10319.1| transcription elongation factor GreB [Shewanella baltica OS185]
gi|160862959|gb|ABX51493.1| transcription elongation factor GreB [Shewanella baltica OS195]
gi|217500409|gb|ACK48602.1| transcription elongation factor GreB [Shewanella baltica OS223]
gi|304349285|gb|EFM13695.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
gi|306910907|gb|EFN41334.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
gi|315269639|gb|ADT96492.1| transcription elongation factor GreB [Shewanella baltica OS678]
Length = 167
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L +GR+ L
Sbjct: 6 ITRQGWQTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDGRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S +I FGA L E +GD+ Y+IVG E D + G ++I SP+
Sbjct: 66 VKRLEELKIVDYSPQQEGKIFFGAWFEL-ENEAGDRVRYRIVGKDELDTKLGYITIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D + V P G K + I Q+
Sbjct: 125 ARALIGKQVDDEVVVQTPSGPKEWYINQI 153
>gi|223933721|ref|ZP_03625695.1| transcription elongation factor GreA [Streptococcus suis 89/1591]
gi|302024344|ref|ZP_07249555.1| transcription elongation factor GreA [Streptococcus suis 05HAS68]
gi|330833338|ref|YP_004402163.1| transcription elongation factor [Streptococcus suis ST3]
gi|223897602|gb|EEF63989.1| transcription elongation factor GreA [Streptococcus suis 89/1591]
gi|292559001|gb|ADE32002.1| Prokaryotic transcription elongation factor GreA [Streptococcus
suis GZ1]
gi|329307561|gb|AEB81977.1| transcription elongation factor [Streptococcus suis ST3]
Length = 160
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 82/129 (63%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP I++ I AR+YGDLSEN+EY+AAK+ Q EG+++ +E I AE+++ ++ D +
Sbjct: 28 RPEIVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISTIETKIRYAEIVNSDAVAADEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD + +S SPI ALIGK+ GD+ ++ P G
Sbjct: 88 AIGKTVTVQEVGETEEEVYHIVGAAGADAFANKISNESPIGHALIGKKTGDVATIETPAG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|332358236|gb|EGJ36064.1| transcription elongation factor GreA [Streptococcus sanguinis
SK355]
Length = 160
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAKDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD +V P G
Sbjct: 88 AIGKTVTIQEIGESEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATVETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|261417196|ref|YP_003250879.1| GreA/GreB family elongation factor [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373652|gb|ACX76397.1| GreA/GreB family elongation factor [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 169
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 88/151 (58%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +GF+K + E + ERP +I + A A GD SENA Y + + R+ EL
Sbjct: 19 ISKEGFEKFKAEWEHLKYVERPAMINQVQAAAAEGDRSENAAYTYGRMRVREIDRRLREL 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I+ A++++ + I FGATV +++K + +K Y IVGD+E D G +S+ SPI
Sbjct: 79 DRILDGAQIVENAATKDGSIRFGATVKMIDKKTKREKIYSIVGDKEIDPLQGRISMKSPI 138
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
AL GK+ GD + V AP G+ YEIL+V +
Sbjct: 139 GEALQGKKAGDTVEVQAPRGKIVYEILEVNY 169
>gi|206895281|ref|YP_002247422.1| transcription elongation factor GreA [Coprothermobacter
proteolyticus DSM 5265]
gi|206737898|gb|ACI16976.1| transcription elongation factor GreA [Coprothermobacter
proteolyticus DSM 5265]
Length = 163
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 100/152 (65%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ KI +EL++ ++ +R + + I EARA GDLSEN+E++AAKE Q L E R+A L
Sbjct: 10 LTEEGYKKILEELKYLKEVKRKEVAEKIQEARALGDLSENSEFEAAKEEQALLEERIARL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD-QEADVQSGLVSISSP 125
E ++ A V+ ++ D+++ G V ++++++G ++++ IVG+ +E D SG +S SP
Sbjct: 70 ETLVYNARVVKAEDLALDQVSVGTKVLVLDESAGREESFIIVGNSEEVDPFSGKISSKSP 129
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVL 156
+ L+G++ GD + + G K YEIL ++
Sbjct: 130 LGSRLLGRKRGDRVEIKLRNGSKAVYEILDIV 161
>gi|322377004|ref|ZP_08051497.1| transcription elongation factor GreA [Streptococcus sp. M334]
gi|321282811|gb|EFX59818.1| transcription elongation factor GreA [Streptococcus sp. M334]
Length = 160
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 84/129 (65%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ +++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDSVAQDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD +V P G
Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATVETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|282882521|ref|ZP_06291142.1| transcription elongation factor GreA [Peptoniphilus lacrimalis
315-B]
gi|281297663|gb|EFA90138.1| transcription elongation factor GreA [Peptoniphilus lacrimalis
315-B]
Length = 157
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 88/153 (57%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E R+A
Sbjct: 5 IFFTPEGLEKIENEIEYLKTVRRKEVAERIKVALGYGDLSENSEYDEAKNEQAYVEERIA 64
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LE + A+VID ++ D + G+TV + + +SGD+ Y IVG EAD SG +S S
Sbjct: 65 KLEMMARNAKVIDEKDLNNDMVNVGSTVVVKDLDSGDEDEYTIVGSAEADPLSGKISNES 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ LIG ++GDI + P G Y++ + +
Sbjct: 125 PVGAGLIGLKVGDITEIEIPDGIIKYKVCAISF 157
>gi|291295486|ref|YP_003506884.1| transcription elongation factor GreA [Meiothermus ruber DSM 1279]
gi|290470445|gb|ADD27864.1| transcription elongation factor GreA [Meiothermus ruber DSM 1279]
Length = 159
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 98/159 (61%), Gaps = 3/159 (1%)
Query: 1 MVDKIPV--TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M DK PV T++G +++QEL + + E+ +I + + A A GDL ENA Y A+
Sbjct: 1 MADKKPVYLTAEGKARLEQELAYLKTEKMQQIAEEMGRAIAEGDLRENAGYDEARRAMWQ 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
N R+AELE+I++R ++++ + G TV+L E +G + + +VG EADV SG
Sbjct: 61 NNSRIAELEDILSRVQIVESGNGIPTEVQIGVTVAL-ETATGQRMSVTMVGSHEADVFSG 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S SP+ +AL+GK++GD + V P G +TY ++++++
Sbjct: 120 KISNESPLGQALMGKKVGDEVQVKGPKGSQTYVVVELVY 158
>gi|261367899|ref|ZP_05980782.1| transcription elongation factor GreA [Subdoligranulum variabile DSM
15176]
gi|282570711|gb|EFB76246.1| transcription elongation factor GreA [Subdoligranulum variabile DSM
15176]
Length = 162
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ VT +G+ K++Q+L + +R + I AR YGDLSENAEY AAKE Q + E
Sbjct: 1 MAKEVVVTREGYKKLEQDLNELRTVKRKEVADKIKVARGYGDLSENAEYDAAKEEQAIVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVS-LVEKNSGDK-KNYQIVGDQEADVQSG 118
R+A+LE + A +ID S +S D ++ G V L E + D+ + Y I G EAD+
Sbjct: 61 ARIADLEATLKVARIIDDSELSNDTVSIGMRVKILAEGDDPDEAEEYDITGSTEADMNLN 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155
+S SP+ ALIG + GD + V P G Y++L V
Sbjct: 121 RISDESPVGAALIGHKAGDEVDVTLPNGSIIVYKVLAV 158
>gi|116493088|ref|YP_804823.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC
25745]
gi|116103238|gb|ABJ68381.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC
25745]
Length = 154
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 91/151 (60%), Gaps = 3/151 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+P+T G+ KI QE+ +Q RP +IKA+++ARA GDLSENAEY AAK EGR+
Sbjct: 6 VPMTPSGYAKINQEIDDLKQT-RPALIKALADARALGDLSENAEYSAAKRDLRRMEGRLR 64
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L+ I+ +++I + S +I G+ V + + D+ Y+IVG EADV + +S S
Sbjct: 65 YLQRQISYSKIIQNTNHS--KIDLGSIVKMRFVDDHDEITYEIVGKHEADVVNNKISFQS 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ AL+ + DI+ V AP + EIL++
Sbjct: 123 PLGSALMHHKTHDIVLVTAPDEQYQVEILEI 153
>gi|302327668|gb|ADL26869.1| transcription elongation factor, GreA/GreB family [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 155
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 88/151 (58%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +GF+K + E + ERP +I + A A GD SENA Y + + R+ EL
Sbjct: 5 ISKEGFEKFKAEWEHLKYVERPAMINQVQAAAAEGDRSENAAYTYGRMRVREIDRRLREL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I+ A++++ + I FGATV +++K + +K Y IVGD+E D G +S+ SPI
Sbjct: 65 DRILDGAQIVENAATKDGSIRFGATVKMIDKKTKREKIYSIVGDKEIDPLQGRISMKSPI 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
AL GK+ GD + V AP G+ YEIL+V +
Sbjct: 125 GEALQGKKAGDTVEVQAPRGKIVYEILEVNY 155
>gi|241888529|ref|ZP_04775837.1| transcription elongation factor GreA [Gemella haemolysans ATCC
10379]
gi|241864796|gb|EER69170.1| transcription elongation factor GreA [Gemella haemolysans ATCC
10379]
Length = 162
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 88/140 (62%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK+ +EL ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+ E+
Sbjct: 11 MTQEGYDKLVEELEHYKKVKRPEVIEKIKIARSFGDLSENSEYDAAKDEQGFIEQRILEM 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A +I++ S I G V+ E G + Y+IVG EA+ +S SP+
Sbjct: 71 EQMIRYAVIIELDGKSS-TIRLGNKVTYQELPDGLTETYKIVGSAEANPFEFKISNESPV 129
Query: 127 ARALIGKELGDIISVNAPGG 146
A+AL+GKE+GD+ V+ P G
Sbjct: 130 AQALLGKEVGDVAKVSLPTG 149
>gi|94967583|ref|YP_589631.1| GreA/GreB family elongation factor [Candidatus Koribacter
versatilis Ellin345]
gi|94549633|gb|ABF39557.1| GreA/GreB family elongation factor [Candidatus Koribacter
versatilis Ellin345]
Length = 156
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 88/145 (60%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
K+QQE+ + E + + + +A A GDLSENAEY AK+ Q R+ +++ +
Sbjct: 8 KLQQEIEVLEHELQHELPAELKKAVAMGDLSENAEYHMAKQRQEFVRARLGQMKRRMAEL 67
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+++++ + DR A G+T+ + + +K +Y++V +E+DV GL+S +SPI RAL+ K
Sbjct: 68 SLVNMANIPKDRAAIGSTLKVHDLTKDEKIDYKLVTSEESDVSKGLISTTSPIGRALLNK 127
Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158
GD++ V P G++ EIL++ I
Sbjct: 128 REGDVVEVVTPAGKRELEILKLTTI 152
>gi|150021255|ref|YP_001306609.1| transcription elongation factor GreA [Thermosipho melanesiensis
BI429]
gi|166201184|sp|A6LMS3|GREA_THEM4 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|149793776|gb|ABR31224.1| transcription elongation factor GreA [Thermosipho melanesiensis
BI429]
Length = 156
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 93/151 (61%), Gaps = 2/151 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T +G++K++ EL +Q+ I + I EAR GDLSEN+EYQ AK Q R+
Sbjct: 6 IYLTKEGYEKLKTELDNLKQKLMFEIAERIKEARELGDLSENSEYQEAKNEQGRIAARIN 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELEN++++AEVI+ + + I G V + +G++K QIV EADV + +S S
Sbjct: 66 ELENMLSKAEVIE--GLDTNVINIGNWVIIKNLETGEEKTIQIVTPHEADVFNNKISFES 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PI R L+GK++G+++ + AP G Y+IL +
Sbjct: 124 PIGRILVGKKVGEVVKIKAPKGVFKYQILGI 154
>gi|50364917|ref|YP_053342.1| transcription elongation factor [Mesoplasma florum L1]
gi|81391980|sp|Q6F215|GREA_MESFL RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|50363473|gb|AAT75458.1| transcription elongation factor [Mesoplasma florum L1]
Length = 156
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 94/147 (63%), Gaps = 3/147 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E
Sbjct: 1 MAKEIILTQEGIEELKHELKHLLEVVRPQVIEELVEARNQGDLSENADYDAARNRQAEVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE +I++A++I+ S+ + I G+ V + N+ + +IVG EAD GL+
Sbjct: 61 ARIKELETMISKAKLIEDSSTTDGAIKIGSKVKFIMLNTKQTREVKIVGAVEADPFKGLI 120
Query: 121 SISSPIARALIGKELGDIISV---NAP 144
S SPIA+A++GK++G+ + V NAP
Sbjct: 121 SNESPIAKAILGKKVGESVEVKDINAP 147
>gi|307706015|ref|ZP_07642838.1| transcription elongation factor greA [Streptococcus mitis SK564]
gi|307620434|gb|EFN99547.1| transcription elongation factor greA [Streptococcus mitis SK564]
Length = 160
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 84/129 (65%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ +++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDSVADDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD ++ P G
Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|299135877|ref|ZP_07029061.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
gi|298602001|gb|EFI58155.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
Length = 156
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 89/144 (61%)
Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
++++++ + E + I +A A GDLSENAEY +AK+ Q R+ +L+ +
Sbjct: 8 LEEQIKALEYELTTELPAEIKKAVALGDLSENAEYHSAKQRQEFVNARLGQLKKRMGELA 67
Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134
++++ + D++ FG+T+ + + ++ Y++V +EADV GL+S +SPI RAL+GKE
Sbjct: 68 MVNLDNIPRDKVGFGSTIVVFDSTKDEEITYKLVTSEEADVTKGLISTTSPIGRALLGKE 127
Query: 135 LGDIISVNAPGGEKTYEILQVLWI 158
+GD +V P G++ E+L++ I
Sbjct: 128 IGDTATVVTPNGKRELEVLKLTTI 151
>gi|300814578|ref|ZP_07094829.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon
836 str. F0141]
gi|300511197|gb|EFK38446.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon
836 str. F0141]
Length = 157
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 88/153 (57%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E R+A
Sbjct: 5 IFFTPEGLEKIENEIEYLKTVRRKEVAERIKVALGYGDLSENSEYDEAKNEQAYVEERIA 64
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LE + A+VID ++ D + G+TV + + +SGD+ Y IVG EAD SG +S S
Sbjct: 65 KLEMMARNAKVIDEKDLNHDMVNVGSTVVVKDLDSGDEDEYTIVGSAEADPLSGKISNES 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ LIG ++GDI + P G Y++ + +
Sbjct: 125 PVGAGLIGLKVGDITEIEIPDGIIKYKVCAISF 157
>gi|288803422|ref|ZP_06408854.1| transcription elongation factor GreA [Prevotella melaninogenica
D18]
gi|302345970|ref|YP_003814323.1| transcription elongation factor GreA [Prevotella melaninogenica
ATCC 25845]
gi|288334032|gb|EFC72475.1| transcription elongation factor GreA [Prevotella melaninogenica
D18]
gi|302149498|gb|ADK95760.1| transcription elongation factor GreA [Prevotella melaninogenica
ATCC 25845]
Length = 156
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 92/146 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AEL
Sbjct: 4 MSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAEL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +A+++D+S +S D + +TV + + K Y IV + EA+++ +SI +PI
Sbjct: 64 KMTVAQAKIVDVSRLSTDAVQIMSTVEMTNVKTNAKMKYTIVSETEANLKQNKISIKTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
A+ L+ K++GD + + P G T I
Sbjct: 124 AQGLLNKKVGDEVEITIPRGTITLRI 149
>gi|148270136|ref|YP_001244596.1| transcription elongation factor GreA [Thermotoga petrophila RKU-1]
gi|281412522|ref|YP_003346601.1| GreA/GreB family elongation factor [Thermotoga naphthophila RKU-10]
gi|166201192|sp|A5ILE7|GREA_THEP1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|147735680|gb|ABQ47020.1| transcription elongation factor GreA [Thermotoga petrophila RKU-1]
gi|281373625|gb|ADA67187.1| GreA/GreB family elongation factor [Thermotoga naphthophila RKU-10]
Length = 156
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 100/155 (64%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+ +T +G++K+++EL +++ I + I EAR GDLSEN+EY+AAK Q
Sbjct: 1 MKKVRLTREGYEKLKKELEDLKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E I++ AE+I+ S S D + G V + ++G++ ++IV QEAD + +S
Sbjct: 61 RIMEIEQILSNAEIIEDSEES-DEVTLGKWVVIKNLDTGEEHKFRIVTPQEADFFAQKLS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ++L+G+++GD++ V AP G + Y+++ V+
Sbjct: 120 SDSPLGKSLLGRKVGDVVKVKAPSGVQRYQVMAVM 154
>gi|332163327|ref|YP_004299904.1| transcription elongation factor GreB [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|325667557|gb|ADZ44201.1| transcription elongation factor GreB [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862980|emb|CBX73113.1| transcription elongation factor greB [Yersinia enterocolitica
W22703]
Length = 165
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 90/149 (60%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V VE SG+++ +++VG E D +SI SP+
Sbjct: 67 TKRLEVLKIVDPDPRQEGKVYFGAWVQ-VENESGEQRIFRLVGPDEFDPAKKWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D ++V P GE TY IL++
Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILEI 154
>gi|282880637|ref|ZP_06289343.1| putative transcription elongation factor GreA [Prevotella
timonensis CRIS 5C-B1]
gi|281305532|gb|EFA97586.1| putative transcription elongation factor GreA [Prevotella
timonensis CRIS 5C-B1]
Length = 155
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 87/140 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+D + EL + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ ++
Sbjct: 4 MSQEGYDNLVAELNRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINKM 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A+++D+S +S + + + V + + K Y IV + EAD+++G +SI +PI
Sbjct: 64 KLTIAEAKIVDVSRLSANMVQILSKVEMTNLKTKSKMTYTIVSESEADLKAGKISIKTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K++GD + + P G
Sbjct: 124 AQGLLNKKVGDEVEIKIPAG 143
>gi|226327577|ref|ZP_03803095.1| hypothetical protein PROPEN_01448 [Proteus penneri ATCC 35198]
gi|225204103|gb|EEG86457.1| hypothetical protein PROPEN_01448 [Proteus penneri ATCC 35198]
Length = 159
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + +EL++ +EERPR+ +++SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITRDGWYALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V+L E + + K +++VG E D +SI SP+
Sbjct: 67 SKRLDELKIVDPDPRQEGKVYFGAWVTL-EDDDENVKTFRLVGPDEFDPAKQWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D ISV PGGE Y +L +
Sbjct: 126 ARALIGKQVDDEISVQTPGGEVNYCVLSI 154
>gi|307706224|ref|ZP_07643041.1| transcription elongation factor greA [Streptococcus mitis SK321]
gi|307708401|ref|ZP_07644867.1| transcription elongation factor GreA [Streptococcus mitis NCTC
12261]
gi|307615500|gb|EFN94707.1| transcription elongation factor GreA [Streptococcus mitis NCTC
12261]
gi|307618414|gb|EFN97564.1| transcription elongation factor greA [Streptococcus mitis SK321]
Length = 160
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 84/129 (65%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ +++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDSVADDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD ++ P G
Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|325696362|gb|EGD38253.1| transcription elongation factor GreA [Streptococcus sanguinis
SK160]
Length = 160
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAKDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD +V P G
Sbjct: 88 AIGKTVTIQEVGESEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATVETPVG 147
Query: 147 EKTYEILQV 155
+I++V
Sbjct: 148 SYDVKIIEV 156
>gi|262340920|ref|YP_003283775.1| transcription elongation factor GreA [Blattabacterium sp.
(Blattella germanica) str. Bge]
gi|262272257|gb|ACY40165.1| transcription elongation factor GreA [Blattabacterium sp.
(Blattella germanica) str. Bge]
Length = 160
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K+Q+E+ + ERP+I I+EAR GDLSENAEY A KE Q E +A+L
Sbjct: 7 ITKEGLKKLQKEIERLENIERPKISMQIAEARDKGDLSENAEYDAIKEAQGFLEMNIAKL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ A +ID + ++ R++ +TV + G ++ Y +V + EAD++SG +SI++PI
Sbjct: 67 KKKLSNARIIDGTQINRTRVSILSTVRVKNLTYGGEQIYTLVPEGEADLKSGKISINTPI 126
Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+ L+GK++G I + P YEIL++ +
Sbjct: 127 STGLLGKQVGQIAHIKLPNKMILDYEILEIAF 158
>gi|15644454|ref|NP_229506.1| transcription elongation factor GreA [Thermotoga maritima MSB8]
gi|7387720|sp|Q9X232|GREA_THEMA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|4982283|gb|AAD36773.1|AE001810_12 transcription elongation factor, greA/greB family [Thermotoga
maritima MSB8]
Length = 156
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 100/155 (64%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+ +T +G++K+++EL +++ I + I EAR GDLSEN+EY+AAK Q
Sbjct: 1 MKKVRLTREGYEKLKKELEDLKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E I++ AE+I+ S S D + G V + ++G++ ++IV QEAD + +S
Sbjct: 61 RIMEIEQILSNAEIIEDSEES-DEVTLGKWVVIKNLDTGEEHKFRIVTPQEADFFAQKLS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ++L+G+++GD++ V AP G + Y+++ V+
Sbjct: 120 SDSPLGKSLLGRKVGDVVKVKAPSGVQRYQVIAVM 154
>gi|39996303|ref|NP_952254.1| transcription elongation factor GreB [Geobacter sulfurreducens PCA]
gi|39983183|gb|AAR34577.1| transcription elongation factor GreB [Geobacter sulfurreducens PCA]
gi|298505313|gb|ADI84036.1| transcription elongation factor GreB [Geobacter sulfurreducens
KN400]
Length = 161
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL W +EERPR+ + +++A A GD SENAEY K+ + R+ L
Sbjct: 8 ITPEGAKKLRTELTWLWKEERPRVTQGVADAAAEGDRSENAEYIYGKKRLREIDRRIRFL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + D++ FGA V L E GD+ Y++VG E D G +S+ SP+
Sbjct: 68 TQRLDALTVVDAPPPATDKVFFGAWVRL-ENEEGDEVVYRVVGPDETDAAKGHISLDSPM 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
++L+G+ GD + V P GE + +L+V
Sbjct: 127 GKSLLGRREGDEVHVRRPAGEAVFTVLEV 155
>gi|288933209|ref|YP_003437268.1| GreA/GreB family elongation factor [Klebsiella variicola At-22]
gi|290512013|ref|ZP_06551381.1| transcription elongation factor GreB [Klebsiella sp. 1_1_55]
gi|288887938|gb|ADC56256.1| GreA/GreB family elongation factor [Klebsiella variicola At-22]
gi|289775803|gb|EFD83803.1| transcription elongation factor GreB [Klebsiella sp. 1_1_55]
Length = 157
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 96/156 (61%), Gaps = 2/156 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++K++QE+ + ++ERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYEKLKQEMDYLWRQERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + + +++D S ++ FGA V +E + GD K ++IVG E + +SI
Sbjct: 62 VRYLTKCLEQLKIVDYSPQQEGKVFFGAWVE-IENDEGDTKRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + ++ ++
Sbjct: 121 DSPMARALLKKEVGDLAIVNTPAGEASWYVNEIEYV 156
>gi|51891618|ref|YP_074309.1| transcription elongation factor [Symbiobacterium thermophilum IAM
14863]
gi|51855307|dbj|BAD39465.1| transcription elongation factor [Symbiobacterium thermophilum IAM
14863]
Length = 160
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ ++ +G ++Q+EL + + +R + + + EAR+YGDLSEN+EY A+ Q EGR+A
Sbjct: 7 VVLSPEGLQQLQEELDYLRNVKRKEVAERLKEARSYGDLSENSEYDDARNEQAFVEGRIA 66
Query: 65 ELENIITRAEVIDISTMSGD--RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
LEN + A ++D S + +I G+TV L + GD Y IVG EAD +S
Sbjct: 67 MLENTLRNAVIMDESEDEAEAGKIRLGSTVVLKDLEYGDLLEYTIVGTVEADPAKNKISN 126
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +A++G+ G+++ V AP G YEI+ V
Sbjct: 127 ESPVGKAIMGRTKGEVVVVEAPAGRIEYEIVDV 159
>gi|327462009|gb|EGF08338.1| transcription elongation factor GreA [Streptococcus sanguinis
SK1057]
gi|328946834|gb|EGG40971.1| transcription elongation factor GreA [Streptococcus sanguinis
SK1087]
gi|332362238|gb|EGJ40038.1| transcription elongation factor GreA [Streptococcus sanguinis
SK1056]
Length = 160
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAKDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD +V P G
Sbjct: 88 AIGKTVTIQEVGESEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATVETPVG 147
Query: 147 EKTYEILQV 155
+I++V
Sbjct: 148 SYDVKIIKV 156
>gi|307704459|ref|ZP_07641369.1| transcription elongation factor greA [Streptococcus mitis SK597]
gi|307621979|gb|EFO01006.1| transcription elongation factor greA [Streptococcus mitis SK597]
Length = 160
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 84/129 (65%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ +++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDSVAQDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD ++ P G
Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|330503584|ref|YP_004380453.1| transcription elongation factor GreB [Pseudomonas mendocina NK-01]
gi|328917870|gb|AEB58701.1| transcription elongation factor GreB [Pseudomonas mendocina NK-01]
Length = 165
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 92/149 (61%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ +++ FGA V+ +E G++ Y+IVG E D++ GL+SI SP+
Sbjct: 75 TKRLEKLKVVSEKPSDPNKVYFGAWVT-IEDEDGEQSRYRIVGPDELDLKQGLISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+GKEL + V++P GEKT I+++
Sbjct: 134 ARALVGKELDAEVRVHSPSGEKTCYIVEI 162
>gi|206575923|ref|YP_002236222.1| transcription elongation factor GreB [Klebsiella pneumoniae 342]
gi|206564981|gb|ACI06757.1| transcription elongation factor GreB [Klebsiella pneumoniae 342]
Length = 157
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 95/156 (60%), Gaps = 2/156 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++K++QE+ + + ERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYEKLKQEMDYLWRHERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + + +++D S ++ FGA V +E + GD K ++IVG E + +SI
Sbjct: 62 VRYLTKCLEQLKIVDYSPQQEGKVFFGAWVE-IENDEGDTKRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + ++ ++
Sbjct: 121 DSPMARALLKKEVGDLAIVNTPAGEASWYVNEIEYV 156
>gi|282878396|ref|ZP_06287184.1| putative transcription elongation factor GreA [Prevotella buccalis
ATCC 35310]
gi|281299474|gb|EFA91855.1| putative transcription elongation factor GreA [Prevotella buccalis
ATCC 35310]
Length = 155
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 86/140 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+D + EL + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ ++
Sbjct: 4 MSQEGYDNLVAELTRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINKM 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A+++D+S +S D + + V + + K Y IV + EAD+++G +SI +PI
Sbjct: 64 KLTIAEAKIVDVSRLSADTVQILSKVEMTNMKTKSKMVYTIVSESEADLKAGKISIKTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K+ GD + + P G
Sbjct: 124 AQGLLNKKEGDEVDIKIPAG 143
>gi|304383994|ref|ZP_07366450.1| transcription elongation factor GreA [Prevotella marshii DSM 16973]
gi|304334886|gb|EFM01160.1| transcription elongation factor GreA [Prevotella marshii DSM 16973]
Length = 202
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 90/140 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ EL+ + ERP+I AI+EAR GDLSEN+EY+AAKE Q E R+ ++
Sbjct: 51 MSQEGYDKMIAELQRLEAVERPKISAAIAEARDKGDLSENSEYEAAKEAQAHLEDRINKM 110
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A+++D S +S + + + V + + K Y IV + EA+++ G ++I++PI
Sbjct: 111 KRTIAEAKIVDTSRLSNEAVQILSKVEMTNLGNKAKMTYTIVSENEANLKEGKIAITTPI 170
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K++GD + + P G
Sbjct: 171 AQGLLNKKVGDEVEIAIPRG 190
>gi|331002785|ref|ZP_08326299.1| hypothetical protein HMPREF0491_01161 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413274|gb|EGG92642.1| hypothetical protein HMPREF0491_01161 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 160
Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 90/149 (60%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++EL+ + +R I + I EAR GDLSENAEY AAK+ Q E R+ +L
Sbjct: 8 LTYEGLKNLEEELQDLKVNKRKEIAEKIKEAREQGDLSENAEYDAAKDEQRDIEARIEQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN++ AEV+ + D I G V +++K+ D+ +++IVG EAD +G +S SP+
Sbjct: 68 ENLLKNAEVVVEDEVDLDTIGIGCMVKILDKDFDDELDFKIVGSTEADSLAGKISNESPL 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GK +G+ V G Y +L++
Sbjct: 128 GKALLGKRIGETAVVETQAGVSEYMVLEI 156
>gi|318607818|emb|CBY29316.1| transcription elongation factor GreB [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 165
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 90/149 (60%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V VE SG+++ +++VG E D +SI SP+
Sbjct: 67 TKRLEVLKIVDPDPRQEGKVYFGAWVQ-VENESGEQRIFRLVGPDEFDPAKKWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D ++V P GE TY IL++
Sbjct: 126 ARALIGKQVDDEVTVQTPNGEVTYWILEI 154
>gi|170724521|ref|YP_001758547.1| transcription elongation factor GreB [Shewanella woodyi ATCC 51908]
gi|169809868|gb|ACA84452.1| transcription elongation factor GreB [Shewanella woodyi ATCC 51908]
Length = 161
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG+ + +EL++ +E RP I K + EA A GD SENA+Y K L + R+ L
Sbjct: 6 ITRKGWQALDKELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++D S ++ FGA V L E SGD Y+IVG E D + G ++I SP+
Sbjct: 66 VKRVEDLTIVDYSPQQEGKVFFGAWVEL-ENESGDVVQYRIVGKDELDTKLGYITIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARALIGK++ D + V P G K + +
Sbjct: 125 ARALIGKQVDDEVVVKTPSGAKEWYV 150
>gi|302876582|ref|YP_003845215.1| transcription elongation factor GreA [Clostridium cellulovorans
743B]
gi|307687257|ref|ZP_07629703.1| transcription elongation factor GreA [Clostridium cellulovorans
743B]
gi|302579439|gb|ADL53451.1| transcription elongation factor GreA [Clostridium cellulovorans
743B]
Length = 158
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 89/152 (58%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G K++ EL + + R I + I A ++GDLSEN+EY AK Q EG++
Sbjct: 5 KYVMTYEGLKKLEDELEFLKTVRRNDIKEKIKVALSFGDLSENSEYDEAKNEQAFVEGKI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A+LE ++ + V+D + + GD + G V + + +SGD Y IVG EAD +S
Sbjct: 65 AQLEAMLKKVTVVDETDIQGDIVGIGTKVKVKDIDSGDVDVYSIVGSAEADPLEFKISHE 124
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +A++GK++G+ + V P G EIL++
Sbjct: 125 SPVGKAMLGKKVGETVDVAVPDGTIKLEILEI 156
>gi|218133837|ref|ZP_03462641.1| hypothetical protein BACPEC_01726 [Bacteroides pectinophilus ATCC
43243]
gi|217991212|gb|EEC57218.1| hypothetical protein BACPEC_01726 [Bacteroides pectinophilus ATCC
43243]
Length = 160
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 87/149 (58%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL+ + R + + + EARA GDLSENAEY AAK+ Q E R+ EL
Sbjct: 9 LTYTGLKQLEDELQQLKVVRRQEVAEKLKEARAQGDLSENAEYDAAKDEQRDIEARIEEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
ENI+ AEV+ + + D+I G V L + ++ + IVG EA+ +S SP+
Sbjct: 69 ENILKNAEVVVETEVDSDKINIGCIVKLFDFEFDEELEFSIVGSTEANSLKNKISNESPL 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ALIGK++GD+I V GE Y++L +
Sbjct: 129 GSALIGKKVGDVIKVETQMGEVEYKVLSI 157
>gi|28209977|ref|NP_780921.1| transcription elongation factor GreA [Clostridium tetani E88]
gi|28202412|gb|AAO34858.1| transcription elongation factor greA [Clostridium tetani E88]
Length = 186
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 89/152 (58%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR+
Sbjct: 32 KYVMTYEGVKKLEEELEYLKTVKRKEITQKIKVALSFGDLSENSEYDEAKNEQAFVEGRI 91
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LEN++ A ++D + M D + G+ V + + D++ + IVG EAD +S
Sbjct: 92 IQLENMLKNATIVDENEMPADTVNVGSIVKVKDFEFNDEEEFIIVGSAEADPLENKISNE 151
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +ALIGK+ G+ + V P G YEI+ V
Sbjct: 152 SPVGKALIGKKAGEKVEVIVPDGISKYEIISV 183
>gi|303230991|ref|ZP_07317734.1| transcription elongation factor GreA [Veillonella atypica
ACS-049-V-Sch6]
gi|302514373|gb|EFL56372.1| transcription elongation factor GreA [Veillonella atypica
ACS-049-V-Sch6]
Length = 157
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 91/149 (61%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K++ EL + + R + + I A YGD+SEN+EY AK Q EG ++EL
Sbjct: 9 LTAEGLKKLEDELAYYKSVRRIEVSQRIKTAIEYGDISENSEYDDAKNEQAFIEGYISEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN I A++ID ST GD ++ G+ V++++ D+ Y IVG EAD + +S SP+
Sbjct: 69 ENKINTAKIIDEST-KGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNNRISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++GK GD + V+ P G T+++L +
Sbjct: 128 GKAILGKRKGDEVEVSTPDGPVTFKVLAI 156
>gi|15903412|ref|NP_358962.1| transcription elongation factor GreA [Streptococcus pneumoniae R6]
gi|182684472|ref|YP_001836219.1| transcription elongation factor GreA [Streptococcus pneumoniae
CGSP14]
gi|15459017|gb|AAL00173.1| Transcription elongation factor GreA [Streptococcus pneumoniae R6]
gi|182629806|gb|ACB90754.1| transcription elongation factor GreA [Streptococcus pneumoniae
CGSP14]
Length = 163
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D +
Sbjct: 31 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 90
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD ++ P G
Sbjct: 91 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETPVG 150
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 151 SYDVKILKV 159
>gi|160932785|ref|ZP_02080174.1| hypothetical protein CLOLEP_01626 [Clostridium leptum DSM 753]
gi|156867859|gb|EDO61231.1| hypothetical protein CLOLEP_01626 [Clostridium leptum DSM 753]
Length = 158
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 90/152 (59%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
++ +T +G ++QEL + + E R I + I A ++GDLSEN+EY AK Q + E R+
Sbjct: 5 QVLLTDEGLHNLEQELEFLKTERRKEIAEKIKVALSFGDLSENSEYDEAKNDQAMVEARI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A++E+++ ++ID ++ + I G+ V + + + YQIVG EAD +G +S
Sbjct: 65 ADIESMLKNVKIIDQDELTTELIHIGSKVQVKDVEFDEVCTYQIVGSSEADPSNGRISDE 124
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ + L+G ++G+ + + P G YEIL +
Sbjct: 125 SPVGKGLLGHKVGETVEIETPAGVMQYEILGI 156
>gi|238019652|ref|ZP_04600078.1| hypothetical protein VEIDISOL_01526 [Veillonella dispar ATCC 17748]
gi|237863693|gb|EEP64983.1| hypothetical protein VEIDISOL_01526 [Veillonella dispar ATCC 17748]
Length = 157
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 91/149 (61%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K+++EL + + R + + I A YGD+SEN+EY AK Q EG + EL
Sbjct: 9 LTAEGLKKLEEELMYYKSVRRIEVSERIKTAIEYGDISENSEYDDAKNEQAFIEGHIVEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN I A++ID ++ GD ++ G+ V++++ D+ Y IVG EAD + +S SP+
Sbjct: 69 ENKINTAKIID-ESVKGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNNRISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++GK GD + V+ P G T+++L +
Sbjct: 128 GKAILGKRKGDEVEVSTPDGPVTFKVLAI 156
>gi|116516490|ref|YP_816807.1| transcription elongation factor GreA [Streptococcus pneumoniae D39]
gi|148984861|ref|ZP_01818114.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP3-BS71]
gi|148992595|ref|ZP_01822263.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP9-BS68]
gi|148997422|ref|ZP_01825027.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP11-BS70]
gi|149003267|ref|ZP_01828163.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP14-BS69]
gi|149007576|ref|ZP_01831211.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP18-BS74]
gi|149011752|ref|ZP_01832948.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP19-BS75]
gi|149021786|ref|ZP_01835793.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP23-BS72]
gi|168484934|ref|ZP_02709879.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC1873-00]
gi|168487712|ref|ZP_02712220.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC1087-00]
gi|168488822|ref|ZP_02713021.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae SP195]
gi|168491591|ref|ZP_02715734.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC0288-04]
gi|168493418|ref|ZP_02717561.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC3059-06]
gi|168577325|ref|ZP_02723096.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae MLV-016]
gi|194397327|ref|YP_002038148.1| transcription elongation factor GreA [Streptococcus pneumoniae G54]
gi|221232229|ref|YP_002511382.1| transcription elongation factor [Streptococcus pneumoniae ATCC
700669]
gi|225854961|ref|YP_002736473.1| transcription elongation factor GreA [Streptococcus pneumoniae JJA]
gi|225857142|ref|YP_002738653.1| transcription elongation factor GreA [Streptococcus pneumoniae
P1031]
gi|225859274|ref|YP_002740784.1| transcription elongation factor GreA [Streptococcus pneumoniae
70585]
gi|225861350|ref|YP_002742859.1| transcription elongation factor GreA [Streptococcus pneumoniae
Taiwan19F-14]
gi|237650199|ref|ZP_04524451.1| transcription elongation factor GreA [Streptococcus pneumoniae CCRI
1974]
gi|237820918|ref|ZP_04596763.1| transcription elongation factor GreA [Streptococcus pneumoniae CCRI
1974M2]
gi|298230257|ref|ZP_06963938.1| transcription elongation factor GreA [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298254453|ref|ZP_06978039.1| transcription elongation factor GreA [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298503253|ref|YP_003725193.1| transcription elongation factor GreA [Streptococcus pneumoniae
TCH8431/19A]
gi|303255302|ref|ZP_07341372.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS455]
gi|303260142|ref|ZP_07346114.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP-BS293]
gi|303262532|ref|ZP_07348473.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP14-BS292]
gi|303264934|ref|ZP_07350849.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS397]
gi|303267244|ref|ZP_07353108.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS457]
gi|303269554|ref|ZP_07355317.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS458]
gi|307068161|ref|YP_003877127.1| transcription elongation factor [Streptococcus pneumoniae AP200]
gi|307127722|ref|YP_003879753.1| transcription elongation factor GreA [Streptococcus pneumoniae
670-6B]
gi|73621019|sp|Q8DP42|GREA_STRR6 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|122277695|sp|Q04HS9|GREA_STRP2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238690838|sp|B5E681|GREA_STRP4 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799568|sp|C1C8A8|GREA_STRP7 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799569|sp|B8ZLB8|GREA_STRPJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799571|sp|C1CFA2|GREA_STRZJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799572|sp|C1CLL5|GREA_STRZP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799573|sp|C1CSD7|GREA_STRZT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116077066|gb|ABJ54786.1| transcription elongation factor GreA [Streptococcus pneumoniae D39]
gi|147756477|gb|EDK63518.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP11-BS70]
gi|147758727|gb|EDK65724.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP14-BS69]
gi|147760935|gb|EDK67905.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP18-BS74]
gi|147764183|gb|EDK71115.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP19-BS75]
gi|147922883|gb|EDK73999.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP3-BS71]
gi|147928612|gb|EDK79626.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP9-BS68]
gi|147930022|gb|EDK81009.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP23-BS72]
gi|172041918|gb|EDT49964.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC1873-00]
gi|183569530|gb|EDT90058.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC1087-00]
gi|183572632|gb|EDT93160.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae SP195]
gi|183574144|gb|EDT94672.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC0288-04]
gi|183576363|gb|EDT96891.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC3059-06]
gi|183577158|gb|EDT97686.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae MLV-016]
gi|194356994|gb|ACF55442.1| transcription elongation factor GreA [Streptococcus pneumoniae G54]
gi|220674690|emb|CAR69263.1| transcription elongation factor [Streptococcus pneumoniae ATCC
700669]
gi|225720296|gb|ACO16150.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae 70585]
gi|225722497|gb|ACO18350.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae JJA]
gi|225724300|gb|ACO20152.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae P1031]
gi|225726751|gb|ACO22602.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae Taiwan19F-14]
gi|298238848|gb|ADI69979.1| transcription elongation factor GreA [Streptococcus pneumoniae
TCH8431/19A]
gi|301794529|emb|CBW36971.1| transcription elongation factor [Streptococcus pneumoniae INV104]
gi|301800352|emb|CBW32982.1| transcription elongation factor [Streptococcus pneumoniae OXC141]
gi|301802237|emb|CBW34988.1| transcription elongation factor [Streptococcus pneumoniae INV200]
gi|302597670|gb|EFL64746.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS455]
gi|302636249|gb|EFL66743.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP14-BS292]
gi|302638639|gb|EFL69102.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP-BS293]
gi|302640898|gb|EFL71282.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS458]
gi|302643209|gb|EFL73492.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS457]
gi|302645453|gb|EFL75685.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS397]
gi|306409698|gb|ADM85125.1| Transcription elongation factor [Streptococcus pneumoniae AP200]
gi|306484784|gb|ADM91653.1| transcription elongation factor GreA [Streptococcus pneumoniae
670-6B]
gi|327389702|gb|EGE88047.1| transcription elongation factor GreA domain protein [Streptococcus
pneumoniae GA04375]
gi|332072310|gb|EGI82793.1| transcription elongation factor GreA domain protein [Streptococcus
pneumoniae GA17570]
gi|332073853|gb|EGI84331.1| transcription elongation factor GreA domain protein [Streptococcus
pneumoniae GA41301]
gi|332074270|gb|EGI84747.1| transcription elongation factor GreA domain protein [Streptococcus
pneumoniae GA17545]
gi|332199561|gb|EGJ13636.1| transcription elongation factor GreA domain protein [Streptococcus
pneumoniae GA41317]
gi|332200079|gb|EGJ14152.1| transcription elongation factor GreA domain protein [Streptococcus
pneumoniae GA47368]
gi|332200957|gb|EGJ15028.1| transcription elongation factor GreA domain protein [Streptococcus
pneumoniae GA47901]
Length = 160
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GD ++ P G
Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDTATIETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|312134579|ref|YP_004001917.1| grea/greb family elongation factor [Caldicellulosiruptor owensensis
OL]
gi|311774630|gb|ADQ04117.1| GreA/GreB family elongation factor [Caldicellulosiruptor owensensis
OL]
Length = 162
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 92/152 (60%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+
Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAALEERI 68
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A LE +I A++ID +S D + G V + ++GD Y IVG +E+D + +S
Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDIVEYSIVGSKESDPLNFKISDE 128
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +AL+GK++GD++ V P G+ Y+IL++
Sbjct: 129 SPVGKALMGKKVGDVVEVIVPAGKFRYKILEI 160
>gi|170288918|ref|YP_001739156.1| transcription elongation factor GreA [Thermotoga sp. RQ2]
gi|238688841|sp|B1LAX5|GREA_THESQ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|170176421|gb|ACB09473.1| transcription elongation factor GreA [Thermotoga sp. RQ2]
Length = 156
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 99/155 (63%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+ +T +G++K+++EL +++ I + I EAR GDLSEN+EY+AAK Q
Sbjct: 1 MKKVRLTREGYEKLKKELEDLKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E I++ AE+I+ S D I G V + ++G++ ++IV QEAD + +S
Sbjct: 61 RIMEIEQILSNAEIIEDSE-ENDEITLGKWVVIRNLDTGEEHKFRIVTPQEADFFAQKLS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ++L+G+++GD++ V AP G + Y+++ V+
Sbjct: 120 SDSPLGKSLLGRKVGDVVKVKAPSGVQRYQVIAVM 154
>gi|116333642|ref|YP_795169.1| transcription elongation factor [Lactobacillus brevis ATCC 367]
gi|116098989|gb|ABJ64138.1| transcription elongation factor GreA [Lactobacillus brevis ATCC
367]
Length = 132
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 83/130 (63%), Gaps = 1/130 (0%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
+RP++I I AR+YGDLSEN+EY++AK+ Q++ E R++ +E ++ A++ID D
Sbjct: 3 QRPKVIDRIKIARSYGDLSENSEYESAKDEQSMLETRISTVERMLQYAQIIDNDDTDKDE 62
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
I G V+ E + + + Y IVG EAD SG +S SPIA+ L+G +G+ ++ PG
Sbjct: 63 ITVGKKVTFQEDDD-EPEEYTIVGAAEADPMSGKISNDSPIAKGLLGHRVGETVTFPTPG 121
Query: 146 GEKTYEILQV 155
G+ T +++ V
Sbjct: 122 GDMTVKVIAV 131
>gi|123444179|ref|YP_001008149.1| transcription elongation factor GreB [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122091140|emb|CAL14023.1| transcription elongation factor [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 165
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V VE SG+++ +++VG E D +SI SP+
Sbjct: 67 TKRLEVLKIVDPDPRQEGKVYFGAWVR-VENESGEQRIFRLVGPDEFDPAKKWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D ++V P GE TY IL +
Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILDI 154
>gi|288801019|ref|ZP_06406475.1| transcription elongation factor GreA [Prevotella sp. oral taxon 299
str. F0039]
gi|288331953|gb|EFC70435.1| transcription elongation factor GreA [Prevotella sp. oral taxon 299
str. F0039]
Length = 155
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 89/140 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ ++
Sbjct: 4 MSQEGYDKLVAELKHLESVERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLESKINKI 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ A+++D S +S D + + V + + K Y IV + EA+++ G ++I++PI
Sbjct: 64 KVSLSEAKIVDTSLLSADAVQIMSKVVMTNLGNNAKMTYTIVSESEANLKEGKLAITTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K++GD + + P G
Sbjct: 124 AQGLLNKKVGDEVEIKIPNG 143
>gi|42522667|ref|NP_968047.1| hypothetical protein Bd1119 [Bdellovibrio bacteriovorus HD100]
gi|39573863|emb|CAE79040.1| greB [Bdellovibrio bacteriovorus HD100]
Length = 183
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ E ERP++++ ++ A + GD SENA+YQ K + R+ L
Sbjct: 33 ITPEGLAKLKAEYHALMHVERPKLVEVVAWAASNGDRSENADYQYGKRRLREIDRRVHFL 92
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I AE++D M G + F ATV+LV ++ GD+ YQIVG+ E D ++G +S SP+
Sbjct: 93 TKRIEDAELVDPKQMKGTTVLFSATVTLVNED-GDEVVYQIVGEDEFDPKAGKISWKSPV 151
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+GK+LGD + + P GE+ I V
Sbjct: 152 ARALLGKKLGDEVRIIKPAGEEFVTIENV 180
>gi|294138934|ref|YP_003554912.1| transcription elongation factor GreB [Shewanella violacea DSS12]
gi|293325403|dbj|BAJ00134.1| transcription elongation factor GreB [Shewanella violacea DSS12]
Length = 161
Score = 101 bits (251), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG+ + +EL++ +E RP I K + EA A GD SENA+Y K L +GR+ L
Sbjct: 6 ITRKGWQALDKELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDGRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V L E +G+ Y+IVG E D + G ++I SP+
Sbjct: 66 VKRVEELKIVDYSPQQEGKVFFGAWVEL-ENEAGEVVQYRIVGKDELDTKLGYITIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
+RALIGK++ D I V P G K + +
Sbjct: 125 SRALIGKQVDDEIVVQTPSGAKEWYV 150
>gi|307128689|ref|YP_003880719.1| putative transcription elongation factor GreB [Candidatus Sulcia
muelleri CARI]
gi|306483151|gb|ADM90021.1| putative transcription elongation factor GreB [Candidatus Sulcia
muelleri CARI]
Length = 158
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/122 (42%), Positives = 83/122 (68%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
ER +IIKAISEAR GDLSEN+EY AAKE Q + E ++ L+ ++ +I+IS +S +
Sbjct: 26 ERKKIIKAISEARDKGDLSENSEYDAAKEAQKILELKIFNLKLKLSNTRLIEISKISTSQ 85
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
++ V + ++G+ +NY +V + E++++ +SI+SPIA LIGK++GDIIS+ P
Sbjct: 86 VSIFTKVKIKNIDNGNYQNYTLVPESESNIKKNKISINSPIAIGLIGKKIGDIISIKLPN 145
Query: 146 GE 147
+
Sbjct: 146 NK 147
>gi|300727402|ref|ZP_07060811.1| transcription elongation factor GreA [Prevotella bryantii B14]
gi|299775282|gb|EFI71881.1| transcription elongation factor GreA [Prevotella bryantii B14]
Length = 155
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 90/140 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ EL++ + ERP+ AI+EA GDLSEN+EY AAKE Q E ++ ++
Sbjct: 4 MSQEGYDKLVAELKYLESVERPKASAAIAEAADKGDLSENSEYDAAKENQAHLEAKINQI 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I++A+++D+S +S D + TV + + K Y IV + EAD++SG +SI +PI
Sbjct: 64 KMTISQAKIVDMSRLSADAVQIMTTVEMTNLGNNAKMKYTIVSESEADLKSGKISIKTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K++GD + P G
Sbjct: 124 AQGLLNKKVGDTAEIKIPRG 143
>gi|300857282|ref|YP_003782266.1| putative transcription elongation factor [Clostridium ljungdahlii
DSM 13528]
gi|300437397|gb|ADK17164.1| predicted transcription elongation factor [Clostridium ljungdahlii
DSM 13528]
Length = 151
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 88/149 (59%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL + + +R I++ I A ++GDLSEN+EY +AK Q EGR+ +L
Sbjct: 1 MTYEGITKLEDELEYLKTAKRREIMEKIKVALSFGDLSENSEYDSAKNEQAFVEGRIVQL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN++ A ++D + + G+ V + + + ++ Y IVG EAD + +S SP+
Sbjct: 61 ENMLKNATIVDEEEIPPGVVGIGSIVKVRDYDFNEEVEYLIVGSAEADPINNKISNESPV 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK+ GDI+ V P G YEIL +
Sbjct: 121 GKGLVGKKAGDIVEVQVPDGVSKYEILSI 149
>gi|125975378|ref|YP_001039288.1| transcription elongation factor GreA [Clostridium thermocellum ATCC
27405]
gi|256005475|ref|ZP_05430437.1| transcription elongation factor GreA [Clostridium thermocellum DSM
2360]
gi|281419339|ref|ZP_06250354.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20]
gi|166200659|sp|A3DJG6|GREA_CLOTH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|125715603|gb|ABN54095.1| transcription elongation factor GreA [Clostridium thermocellum ATCC
27405]
gi|255990530|gb|EEU00650.1| transcription elongation factor GreA [Clostridium thermocellum DSM
2360]
gi|281406959|gb|EFB37222.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20]
gi|316939493|gb|ADU73527.1| transcription elongation factor GreA [Clostridium thermocellum DSM
1313]
Length = 159
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 93/152 (61%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
++ +T +G K++QEL + +R + + I +A ++GD+SEN+EY AK Q EGR+
Sbjct: 6 EVVLTYEGLQKLEQELENLKTVKRREVAERIKQALSFGDISENSEYDEAKNEQAYIEGRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LEN++ A+VID + D ++ G+ V +++ ++ Y IVG EAD +S
Sbjct: 66 FQLENMLKNAKVIDEEDIQTDVVSIGSKVKVLDMEFDEEVEYYIVGSTEADPSQYKISNE 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +ALIG ++GDI+ V P G ++IL++
Sbjct: 126 SPVGKALIGGKIGDIVEVTVPDGVIKFKILEI 157
>gi|269797572|ref|YP_003311472.1| transcription elongation factor GreA [Veillonella parvula DSM 2008]
gi|282850020|ref|ZP_06259402.1| transcription elongation factor GreA [Veillonella parvula ATCC
17745]
gi|294793385|ref|ZP_06758530.1| transcription elongation factor GreA [Veillonella sp. 6_1_27]
gi|294795204|ref|ZP_06760338.1| transcription elongation factor GreA [Veillonella sp. 3_1_44]
gi|269094201|gb|ACZ24192.1| transcription elongation factor GreA [Veillonella parvula DSM 2008]
gi|282580209|gb|EFB85610.1| transcription elongation factor GreA [Veillonella parvula ATCC
17745]
gi|294453996|gb|EFG22371.1| transcription elongation factor GreA [Veillonella sp. 3_1_44]
gi|294455816|gb|EFG24181.1| transcription elongation factor GreA [Veillonella sp. 6_1_27]
Length = 157
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 91/149 (61%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K+++EL + + R + + I A YGD+SEN+EY AK Q EG + EL
Sbjct: 9 LTAEGLKKLEEELAYYKSVRRIEVSERIKTAIEYGDISENSEYDDAKNEQAFIEGHIVEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN I A++ID ++ GD ++ G+ V++++ D+ Y IVG EAD + +S SP+
Sbjct: 69 ENKINTAKIID-ESVKGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNNRISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++GK GD + V+ P G T+++L +
Sbjct: 128 GKAILGKRKGDEVEVSTPDGPVTFKVLAI 156
>gi|153815947|ref|ZP_01968615.1| hypothetical protein RUMTOR_02192 [Ruminococcus torques ATCC 27756]
gi|317500711|ref|ZP_07958929.1| transcription elongation factor [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089814|ref|ZP_08338707.1| transcription elongation factor greA [Lachnospiraceae bacterium
3_1_46FAA]
gi|145846766|gb|EDK23684.1| hypothetical protein RUMTOR_02192 [Ruminococcus torques ATCC 27756]
gi|316897905|gb|EFV19958.1| transcription elongation factor [Lachnospiraceae bacterium
8_1_57FAA]
gi|330403511|gb|EGG83069.1| transcription elongation factor greA [Lachnospiraceae bacterium
3_1_46FAA]
Length = 161
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 87/149 (58%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ EL
Sbjct: 9 LTYAGLKALEDELETLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + D+I G TV + + ++ ++IVG EA+ G +S SP+
Sbjct: 69 EGILKNAEVVVEDEVDFDKINVGCTVKVFDITFDEEMEFKIVGSTEANSLVGKISNESPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ALIGK++GD +SV GE Y++L++
Sbjct: 129 GQALIGKKVGDTVSVETQAGEIKYKVLEI 157
>gi|83814801|ref|YP_445548.1| transcription elongation factor GreA [Salinibacter ruber DSM 13855]
gi|83756195|gb|ABC44308.1| transcription elongation factor GreA [Salinibacter ruber DSM 13855]
Length = 164
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 83/130 (63%)
Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
+ EER RI I+EARA GDLSENAEY AAKE Q E R+ ++E+ I RA ++D ST+
Sbjct: 30 KTEERSRIADEIAEARAKGDLSENAEYDAAKEEQGKLEARIKQIEDTIARARIVDESTVD 89
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
+ + V++ ++GD++ + +V ++EA++ +S+ SPI L+ +E GD +S++
Sbjct: 90 DSKAYILSDVTVENLDTGDEQTFTLVSEEEANISENKISVDSPIGEGLLAQEEGDEVSID 149
Query: 143 APGGEKTYEI 152
P G ++I
Sbjct: 150 VPAGTVHFKI 159
>gi|78222321|ref|YP_384068.1| GreA/GreB family elongation factor [Geobacter metallireducens
GS-15]
gi|78193576|gb|ABB31343.1| GreA/GreB family elongation factor [Geobacter metallireducens
GS-15]
Length = 161
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL W +EERPR+ + +S+A A GD SENAEY K+ + R+ L
Sbjct: 8 ITPEGAKKLRDELAWLWKEERPRVTQGVSDAAAEGDRSENAEYIYGKKRLREIDRRIRFL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V++ + ++ FGA + L E GD+ Y++VG E D G +SI SP+
Sbjct: 68 TQRLDHLTVVEDPPPATGKVFFGAWIRL-ETEEGDEVIYRVVGPDETDASKGFISIDSPM 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+AL+G+ GD + V P GE + +L+V +
Sbjct: 127 GKALLGRNEGDEVPVRRPAGEAVFTVLEVAY 157
>gi|260893494|ref|YP_003239591.1| transcription elongation factor GreA [Ammonifex degensii KC4]
gi|260865635|gb|ACX52741.1| transcription elongation factor GreA [Ammonifex degensii KC4]
Length = 159
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 79/129 (61%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
R + + I +A A+GD+SENAEY+ AK Q EGR+ LE I+ A VID + + +
Sbjct: 28 RREVAERIKQALAFGDISENAEYEDAKNEQAFVEGRIITLEKILRHARVIDQEEIGTEEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
G+TV L + G + Y IVG +EAD + +S SP+ RAL+GK+ GD + V+ P G
Sbjct: 88 TIGSTVRLKDLADGAEYEYTIVGSEEADPAAHRISYESPVGRALLGKKKGDTVDVDVPAG 147
Query: 147 EKTYEILQV 155
+ +++IL +
Sbjct: 148 KLSFQILDI 156
>gi|166153878|gb|ABY82795.1| transcription elongation factor [Listonella anguillarum]
Length = 126
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 92/127 (72%), Gaps = 2/127 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +++ +E R + RP+I +AI+ AR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRG-EQLLREELDRLLKLRPQITQAIATARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VIDI+ M ++ FG+TV+L++ ++ + K YQIVG+ EA+++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDITKMENTGKVIFGSTVTLIDSDTDEVKRYQIVGEDEAEIKSGRI 119
Query: 121 SISSPIA 127
S+SSPIA
Sbjct: 120 SVSSPIA 126
>gi|152972284|ref|YP_001337430.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238896873|ref|YP_002921618.1| transcription elongation factor GreB [Klebsiella pneumoniae
NTUH-K2044]
gi|262045242|ref|ZP_06018268.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330012470|ref|ZP_08307384.1| transcription elongation factor GreB [Klebsiella sp. MS 92-3]
gi|150957133|gb|ABR79163.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238549200|dbj|BAH65551.1| transcription elongation factor [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259037452|gb|EEW38697.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328533821|gb|EGF60500.1| transcription elongation factor GreB [Klebsiella sp. MS 92-3]
Length = 157
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 96/156 (61%), Gaps = 2/156 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++K++QE+ + ++ERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYEKLKQEMDYLWRQERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + + +++D S ++ FGA V +E + GD K ++IVG E + +SI
Sbjct: 62 VRYLTKCLEQLKIVDYSPQQEGKVFFGAWVE-IENDEGDIKRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + ++ ++
Sbjct: 121 DSPMARALLKKEVGDLAIVNTPAGEASWYVNEIEYV 156
>gi|294507431|ref|YP_003571489.1| transcription elongation factor greA [Salinibacter ruber M8]
gi|294343759|emb|CBH24537.1| Transcription elongation factor greA [Salinibacter ruber M8]
Length = 178
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 83/130 (63%)
Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
+ EER RI I+EARA GDLSENAEY AAKE Q E R+ ++E+ I RA ++D ST+
Sbjct: 44 KTEERSRIADEIAEARAKGDLSENAEYDAAKEEQGKLEARIKQIEDTIARARIVDESTVD 103
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
+ + V++ ++GD++ + +V ++EA++ +S+ SPI L+ +E GD +S++
Sbjct: 104 DSKAYILSDVTVENLDTGDEQTFTLVSEEEANISENKISVDSPIGEGLLAQEEGDEVSID 163
Query: 143 APGGEKTYEI 152
P G ++I
Sbjct: 164 VPAGTVHFKI 173
>gi|108805000|ref|YP_644937.1| transcription elongation factor GreA [Rubrobacter xylanophilus DSM
9941]
gi|108766243|gb|ABG05125.1| transcription elongation factor GreA [Rubrobacter xylanophilus DSM
9941]
Length = 154
Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 92/150 (61%), Gaps = 1/150 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF K+Q+EL++ + R + + I +AR +GD+SEN+EY AK Q L E R++EL
Sbjct: 1 MTPEGFAKLQEELKYLTEVRRKEVAERIRQAREFGDISENSEYDDAKNEQGLLERRISEL 60
Query: 67 ENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ + A+++D S+ + G V+L G ++ +QIVG EAD SG +S +SP
Sbjct: 61 QRRLRNAKIVDPASSAEEGAVDLGTRVTLRVVGDGRERTFQIVGANEADPASGKLSHASP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ +AL+ + +G+ + V+ P G YEI+ V
Sbjct: 121 VGKALLRRRVGEKVRVSTPRGATEYEIVSV 150
>gi|169829310|ref|YP_001699468.1| transcription elongation factor GreA [Lysinibacillus sphaericus
C3-41]
gi|168993798|gb|ACA41338.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Lysinibacillus sphaericus C3-41]
Length = 154
Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 93/153 (60%), Gaps = 4/153 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K+++EL + E R I++ I AR +GDLSENAEY +AKE Q EGR++ L
Sbjct: 1 MTAEGKRKLEEELVKLETETRKEIVERIKIARDFGDLSENAEYDSAKEEQAFLEGRISTL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVE----KNSGDKKNYQIVGDQEADVQSGLVSI 122
+++I A +I ++ G TV+ VE K S ++++Y IVG EAD +S
Sbjct: 61 KSMIRNAVIISEDETDNSVVSLGKTVTFVEIINGKPSTEEESYTIVGSAEADPMEFRISN 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPIA+ L+G+ G+ ++V PGGE +I+ +
Sbjct: 121 ESPIAKGLLGRAEGEEVAVQTPGGEMKVKIVSI 153
>gi|320450471|ref|YP_004202567.1| transcription cleavage factor GreA [Thermus scotoductus SA-01]
gi|320150640|gb|ADW22018.1| transcription cleavage factor GreA [Thermus scotoductus SA-01]
Length = 156
Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +GF ++Q+EL + +R I +A GDL ENA Y A+ NE
Sbjct: 1 MKKPVYLTPEGFRRLQEELHHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE+++ RA V++ S D++A G V L E SG++ + IVG EAD+ SG +
Sbjct: 61 ARIAQLEDLLARAVVVE-GNGSYDQVALGCQVEL-ETESGERLSLAIVGSHEADIFSGKI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+GK++GD++ + G + Y IL++
Sbjct: 119 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEI 153
>gi|291556889|emb|CBL34006.1| transcription elongation factor GreA [Eubacterium siraeum V10Sc8a]
Length = 156
Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +TS+G +++ L + R I + I A ++GDLSEN+EY AK Q + E
Sbjct: 1 MATQTTLTSQGLKDLEERLEHLKSVTRKEIAEKIKVALSFGDLSENSEYDEAKNEQGIVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+AE+E + A+V+D +S + + G TV ++E SG K + +VG +E D+++ +
Sbjct: 61 AEIAEIEATLKNAKVVDEDELSTEHVNIGNTV-VIEDESGKKIKFFLVGSKEVDMKAMKI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +A IG++LG+ + V AP G K Y+I+++
Sbjct: 120 SDESPIGKACIGRKLGEEVLVEAPAGVKKYKIVEI 154
>gi|323341649|ref|ZP_08081882.1| transcription elongation factor GreA [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|322464074|gb|EFY09267.1| transcription elongation factor GreA [Erysipelothrix rhusiopathiae
ATCC 19414]
Length = 156
Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 100/164 (60%), Gaps = 15/164 (9%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++IPVT G D++ +ELR + ERP +I+ + ARA GDLSENA+Y AA++ Q E
Sbjct: 1 MTERIPVTQAGLDELNRELRQLIEVERPEVIEDLKAARAQGDLSENADYDAARDRQARVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDR------IAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
R+ E+E +T+ E+ID GD+ + GATV++ + ++ + IVG EAD
Sbjct: 61 ARIREIEATLTKVEIID-----GDKAKKHKTVGLGATVTIYDMEMEIEETFSIVGSVEAD 115
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++G +S SP+A+A+ + GD++ V ++ YE+ +VL I
Sbjct: 116 PENGKLSNVSPLAQAMNEAKEGDVVEVQV---DEPYEV-KVLKI 155
>gi|294675384|ref|YP_003576000.1| transcription elongation factor GreA family protein [Prevotella
ruminicola 23]
gi|294473225|gb|ADE82614.1| transcription elongation factor GreA family protein [Prevotella
ruminicola 23]
Length = 155
Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 86/140 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ +L
Sbjct: 4 MSQEGYDKLIAELQRLEGVERPKASAAIAEAREKGDLSENSEYDAAKEAQAHLEDKINQL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A+VID S +S D + + V + + K Y IV + EA+++ G +SI +PI
Sbjct: 64 KMTIAEAKVIDTSRLSTDSVQILSKVEMTNLTNKAKMTYTIVSESEANLREGKISIQTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ ++GD + V P G
Sbjct: 124 AQGLLNHKVGDEVEVKIPRG 143
>gi|303242488|ref|ZP_07328968.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2]
gi|302589956|gb|EFL59724.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2]
Length = 158
Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 95/156 (60%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV K + +T +G K++QEL + + +R + + I +A A+GDLSEN+EY AK Q
Sbjct: 1 MVKKEVVLTYEGLQKLEQELEFLKAVKRREVAERIKQALAFGDLSENSEYDEAKNEQAHV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +LEN++ A+VID + D ++ G+ V++++ ++ Y IVG EA+
Sbjct: 61 EGRIVQLENMLKNAKVIDEDEVKTDVVSVGSKVTILDIEFNEEIEYYIVGSAEANPSQFK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ AL+GK+ G ++ VN P G ++I+ +
Sbjct: 121 ISNESPVGSALMGKKKGTVVDVNVPDGIVKFKIVNI 156
>gi|257457224|ref|ZP_05622399.1| transcript cleavage factor/unknown domain fusion protein [Treponema
vincentii ATCC 35580]
gi|257445375|gb|EEV20443.1| transcript cleavage factor/unknown domain fusion protein [Treponema
vincentii ATCC 35580]
Length = 892
Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 92/149 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VTSK ++ ++EL+ + E PR K + A + GDL EN+EY+AAKE QN ++ L
Sbjct: 739 VTSKMLEEKKKELQRLIEVEIPRNSKEVGFALSLGDLRENSEYKAAKEEQNRLNNTVSRL 798
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + RA+V D +T++ R+ FG V+L + S +K+ Y I+G E+D ++G++S SP+
Sbjct: 799 QEELERAQVFDPTTITTTRVGFGTVVTLEKPGSNEKETYTILGPWESDPENGVISYMSPL 858
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
L+ ++G+ +S EKTY+IL +
Sbjct: 859 GTNLLNHKVGETLSFTVNEEEKTYKILDI 887
>gi|295102173|emb|CBK99718.1| transcription elongation factor GreA [Faecalibacterium prausnitzii
L2-6]
Length = 161
Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 85/146 (58%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +++ G +Q+EL + + R + + I EAR++GDLSEN+EY AK Q L E
Sbjct: 1 MAQEIKMSAAGLKAMQEELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE +I A VID S +S + ++ G V++ + + + Y IVG EAD +G +
Sbjct: 61 NRITELEQMIKNAVVIDESELSVESVSVGTHVTIQMEGEDEVEEYDIVGRTEADPLNGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S SP+ AL+ K +GD V P G
Sbjct: 121 SDESPVGHALLEKAVGDTAEVLLPTG 146
>gi|320335243|ref|YP_004171954.1| transcription elongation factor GreA [Deinococcus maricopensis DSM
21211]
gi|319756532|gb|ADV68289.1| transcription elongation factor GreA [Deinococcus maricopensis DSM
21211]
Length = 156
Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 96/155 (61%), Gaps = 3/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI +T KG+DK+++ L + Q R +I + + A A GD+ E+A Y A+ Q+ NE R
Sbjct: 4 EKITMTRKGYDKLRETLEYLQTTRREQISEYMGSALADGDIRESAAYDEARMQQSENEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE+ ++RA++++ + +G I GA V V+ G++++ +IVG EAD G +S
Sbjct: 64 ILELEDQLSRAQIVEEGSQTG--IGLGAKVR-VKDAKGNERDIEIVGTYEADALKGKISD 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ +AL G GD++ VN P G++ + ++ V +
Sbjct: 121 HSPLGQALAGHGTGDMVVVNLPKGQQKFTVISVKY 155
>gi|121535049|ref|ZP_01666866.1| transcription elongation factor GreA [Thermosinus carboxydivorans
Nor1]
gi|121306299|gb|EAX47224.1| transcription elongation factor GreA [Thermosinus carboxydivorans
Nor1]
Length = 159
Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 88/149 (59%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G KI+Q+L + R + + I +A +GD+SEN+EY+ AK Q EG + L
Sbjct: 8 LTVDGLKKIEQKLEHLKSVRRREVAERIKQAIEFGDISENSEYEDAKNEQAFIEGEILTL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A+VID +S D + G+TV L + GD+ Y +VG EAD +S SP+
Sbjct: 68 EKMLRNAKVIDEGEISTDTVTIGSTVVLKDLEFGDELEYTLVGSAEADPMEFKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++G+++G ++ VN P G Y+IL++
Sbjct: 128 GQAIMGQKVGSVVEVNVPAGILKYKILEI 156
>gi|15829024|ref|NP_326384.1| transcription elongation factor GreA [Mycoplasma pulmonis UAB CTIP]
gi|14089968|emb|CAC13726.1| TRANSCRIPTION ELONGATION FACTOR GREA (TRANSCRIPT CLEAVAGE FACTOR
GREA) [Mycoplasma pulmonis]
Length = 164
Score = 100 bits (249), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 94/154 (61%), Gaps = 5/154 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQ-QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+KI +T + K ++E +W ERP +I I EAR GDLSENAEY AA+E Q E
Sbjct: 12 NKIYLTQETIKKYEEE-KWHLINVERPAVILEIKEARQQGDLSENAEYDAAREKQGQIED 70
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELENI++ A I I D+I G+ V ++ +++G ++ ++IVG + D +S
Sbjct: 71 RITELENILSNA--ISIQESHSDKIGLGSVVRILNQSTGKERTFKIVGSFDTDPTQNKIS 128
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+A+++IG GD++ ++AP + T +IL V
Sbjct: 129 YESPLAKSIIGFSKGDVVEIDAP-DKYTTKILSV 161
>gi|25453004|sp|Q98Q16|GREA_MYCPU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
Length = 157
Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 60/154 (38%), Positives = 94/154 (61%), Gaps = 5/154 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQ-QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+KI +T + K ++E +W ERP +I I EAR GDLSENAEY AA+E Q E
Sbjct: 5 NKIYLTQETIKKYEEE-KWHLINVERPAVILEIKEARQQGDLSENAEYDAAREKQGQIED 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELENI++ A I I D+I G+ V ++ +++G ++ ++IVG + D +S
Sbjct: 64 RITELENILSNA--ISIQESHSDKIGLGSVVRILNQSTGKERTFKIVGSFDTDPTQNKIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+A+++IG GD++ ++AP + T +IL V
Sbjct: 122 YESPLAKSIIGFSKGDVVEIDAP-DKYTTKILSV 154
>gi|15901363|ref|NP_345967.1| transcription elongation factor GreA [Streptococcus pneumoniae
TIGR4]
gi|111658360|ref|ZP_01409047.1| hypothetical protein SpneT_02000439 [Streptococcus pneumoniae
TIGR4]
gi|148988561|ref|ZP_01819994.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP6-BS73]
gi|25453002|sp|Q97PT2|GREA_STRPN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|14973006|gb|AAK75607.1| transcription elongation factor GreA [Streptococcus pneumoniae
TIGR4]
gi|147925762|gb|EDK76837.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP6-BS73]
Length = 160
Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 82/129 (63%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD G VS SPI +ALIGK+ GD ++ P G
Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFVGKVSNESPIGQALIGKKTGDTATIETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|94984775|ref|YP_604139.1| transcription elongation factor GreA [Deinococcus geothermalis DSM
11300]
gi|94555056|gb|ABF44970.1| transcription elongation factor GreA [Deinococcus geothermalis DSM
11300]
Length = 156
Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 92/154 (59%), Gaps = 3/154 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G+DK+++ L + + R +I + + A A GDL E+A Y A+ Q+ NE R+
Sbjct: 5 RIPMTKRGYDKLRETLEYLKTTRREQISEYMGSAIADGDLRESAAYDEARMQQSENEARI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE+ + RA++I+ G GA V V G+++ +++VG E DV G +S +
Sbjct: 65 LELEDQLERAQIIEEDASGG--AGLGAKVK-VRDEKGNERQFELVGTYEVDVLKGKISDA 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPI +AL GK G I++V P G +E+L+V +
Sbjct: 122 SPIGQALSGKRPGQIVTVQLPKGSAKFEVLEVTY 155
>gi|83319925|ref|YP_424238.1| transcription elongation factor GreA [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
gi|123740058|sp|Q2SSM5|GREA_MYCCT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|83283811|gb|ABC01743.1| transcription elongation factor GreA [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
Length = 157
Score = 100 bits (249), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 89/142 (62%), Gaps = 1/142 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E
Sbjct: 1 MSKEIILTQEGLEELKAELKNLLEVTRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60
Query: 61 GRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ E+E +I RA+VID S T S + G+TV + K +IVG EAD S L
Sbjct: 61 ARIKEVETLINRAKVIDNSKTHSTGEVKIGSTVEFLSSLDHKTKEIKIVGAIEADPFSRL 120
Query: 120 VSISSPIARALIGKELGDIISV 141
+S SPIA+A++GK++GD + +
Sbjct: 121 ISNESPIAKAILGKKIGDTVEI 142
>gi|145641637|ref|ZP_01797214.1| transcription elongation factor GreA [Haemophilus influenzae R3021]
gi|145273684|gb|EDK13553.1| transcription elongation factor GreA [Haemophilus influenzae
22.4-21]
Length = 107
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 47/100 (47%), Positives = 74/100 (74%), Gaps = 1/100 (1%)
Query: 60 EGRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++SG
Sbjct: 8 EGRIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSG 67
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
L+S++SPIAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 68 LISVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 107
>gi|313665187|ref|YP_004047058.1| transcription elongation factor GreA [Mycoplasma leachii PG50]
gi|312949485|gb|ADR24081.1| putative transcription elongation factor GreA [Mycoplasma leachii
PG50]
Length = 157
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 89/142 (62%), Gaps = 1/142 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E
Sbjct: 1 MSKEIILTQEGLEELKAELKNLLEVTRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60
Query: 61 GRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ E+E +I RA+VID S T S + G+TV + K +IVG EAD S L
Sbjct: 61 ARIKEVETLINRAKVIDDSKTHSTGEVKIGSTVEFLSSLDHKTKEIKIVGAIEADPFSRL 120
Query: 120 VSISSPIARALIGKELGDIISV 141
+S SPIA+A++GK++GD + +
Sbjct: 121 ISNESPIAKAILGKKIGDTVEI 142
>gi|303228842|ref|ZP_07315655.1| transcription elongation factor GreA [Veillonella atypica
ACS-134-V-Col7a]
gi|302516462|gb|EFL58391.1| transcription elongation factor GreA [Veillonella atypica
ACS-134-V-Col7a]
Length = 157
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 91/149 (61%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K++ EL + + R + + I A YGD+SEN+EY AK Q EG ++EL
Sbjct: 9 LTAEGLKKLEDELAYYKSVRRIEVSQRIKTAIEYGDISENSEYDDAKNEQAFIEGYISEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN I A++ID ++ GD ++ G+ V++++ D+ Y IVG EAD + +S SP+
Sbjct: 69 ENKINTAKIID-ESIKGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNNRISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++GK GD + V+ P G T+++L +
Sbjct: 128 GKAILGKRKGDEVEVSTPDGPVTFKVLAI 156
>gi|71279513|ref|YP_271605.1| transcription elongation factor GreB [Colwellia psychrerythraea
34H]
gi|71145253|gb|AAZ25726.1| transcription elongation factor GreB [Colwellia psychrerythraea
34H]
Length = 160
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 62/159 (38%), Positives = 99/159 (62%), Gaps = 21/159 (13%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+D++ +EL++ ++ERP+I +++SEA A GD SENAEY K R+ E+
Sbjct: 7 ITRAGWDRLDKELKFLWKDERPKITRSVSEAAAQGDRSENAEYIYGKR-------RLREI 59
Query: 67 EN----IITRAEVIDISTMSGD-----RIAFGATVSLVEKNSGD-KKNYQIVGDQEADVQ 116
+ ++ R E D++ + D R+ FGA V+L+ N D + Y++VG E DV+
Sbjct: 60 DRRVRFLMKRTE--DLTIVYPDPQQEGRVFFGAWVTLI--NEDDIEVVYRLVGPDEWDVK 115
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
G +SI SP+ARAL+GK + D I VNAP GE+ ++I+ +
Sbjct: 116 RGEISIDSPMARALLGKAVDDEIVVNAPEGERVFDIVNI 154
>gi|254163334|ref|YP_003046442.1| transcription elongation factor GreB [Escherichia coli B str.
REL606]
gi|297517135|ref|ZP_06935521.1| transcription elongation factor GreB [Escherichia coli OP50]
gi|242378929|emb|CAQ33727.1| transcription elongation factor GreB [Escherichia coli BL21(DE3)]
gi|253975235|gb|ACT40906.1| transcription elongation factor GreB [Escherichia coli B str.
REL606]
gi|253979391|gb|ACT45061.1| transcription elongation factor GreB [Escherichia coli BL21(DE3)]
Length = 158
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++KI+QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKIKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150
>gi|146307584|ref|YP_001188049.1| transcription elongation factor GreB [Pseudomonas mendocina ymp]
gi|145575785|gb|ABP85317.1| transcription elongation factor GreB [Pseudomonas mendocina ymp]
Length = 165
Score = 100 bits (248), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 91/149 (61%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ +++ FGA V+ +E G++ Y+IVG E D++ GL+SI SP+
Sbjct: 75 TKRLEKLKVVSDRPSDPNKVYFGAWVT-IEDEDGEQSRYRIVGPDELDLKQGLISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+GK L + V++P GEKT I+++
Sbjct: 134 ARALVGKPLDAEVRVHSPSGEKTCYIVEI 162
>gi|225569857|ref|ZP_03778882.1| hypothetical protein CLOHYLEM_05951 [Clostridium hylemonae DSM
15053]
gi|225161327|gb|EEG73946.1| hypothetical protein CLOHYLEM_05951 [Clostridium hylemonae DSM
15053]
Length = 160
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 86/149 (57%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ EL
Sbjct: 8 LTYAGLKALEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + D+I G V + +K ++ ++IVG EA+ G +S SP+
Sbjct: 68 EGILKNAEVVVEDEVDFDKINVGCAVKVFDKTFDEEMEFKIVGSTEANSLEGKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GK++GD + V GE Y++L++
Sbjct: 128 GQALMGKKVGDTVKVETQAGEMAYKVLEI 156
>gi|127514564|ref|YP_001095761.1| transcription elongation factor GreB [Shewanella loihica PV-4]
gi|126639859|gb|ABO25502.1| transcription elongation factor GreB [Shewanella loihica PV-4]
Length = 160
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL++ +E RP I K + EA A GD SENA+Y K L + R+ L
Sbjct: 6 ITREGWQALDRELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V L E +G Y+IVG E D + G ++I SP+
Sbjct: 66 VKRVEDLQIVDYSPQQEGKVFFGAWVEL-EDETGKIVRYRIVGKDELDTKLGYITIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARALIGK++ D + VN P G+K + +
Sbjct: 125 ARALIGKQVDDEVVVNTPAGKKEWYV 150
>gi|291541638|emb|CBL14748.1| transcription elongation factor GreA [Ruminococcus bromii L2-63]
Length = 160
Score = 100 bits (248), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 92/151 (60%), Gaps = 2/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G +++EL + +R I + I AR+YGDLSEN+EY AK Q + E R+A +
Sbjct: 8 LTAEGLKNLEEELAELKNVKRKEIAEKIKVARSYGDLSENSEYDDAKNEQAIMEARIATI 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV--GDQEADVQSGLVSISS 124
E+I+ A++ID S S D++ + V++ + + Y+IV G E + G +S S
Sbjct: 68 ESILKTAQIIDESETSNDKVHLTSVVTIEMVGTDRQMTYKIVGSGSNETNPAQGKISDES 127
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ +AL+ + +GD++ V PGG K ++IL++
Sbjct: 128 PVGKALMDRCVGDVVEVETPGGVKAFKILEI 158
>gi|260913554|ref|ZP_05920031.1| transcription elongation factor GreB [Pasteurella dagmatis ATCC
43325]
gi|260632330|gb|EEX50504.1| transcription elongation factor GreB [Pasteurella dagmatis ATCC
43325]
Length = 164
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T G++ + QEL++ ++ERP++ +A+S+A A GD SENAEY K +
Sbjct: 6 MVKSNYITRTGWNALDQELKFLWKDERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 65
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V+L E G++K Y+IVG E D +
Sbjct: 66 RRVRFLMKRLEVLQIVDYNPKQEGKVFFGAWVAL-ENEEGEEKQYRIVGCDEFDPAKNWI 124
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
SI SP+ARALIGK + D I VN P G
Sbjct: 125 SIDSPVARALIGKAVDDEIKVNTPSG 150
>gi|300931063|ref|ZP_07146417.1| transcription elongation factor GreB [Escherichia coli MS 187-1]
gi|300461083|gb|EFK24576.1| transcription elongation factor GreB [Escherichia coli MS 187-1]
Length = 170
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++KI+QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKIKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 74 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYV 162
>gi|268609180|ref|ZP_06142907.1| transcription elongation factor GreA [Ruminococcus flavefaciens
FD-1]
Length = 156
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 90/149 (60%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ + +DK+ EL +R + + + AR+YGDLSENAEY AK Q + E +AEL
Sbjct: 6 MSRESYDKLVAELNDLIINKRKEVAERLKVARSYGDLSENAEYDEAKNEQAILEAHIAEL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I AE++D S +S D I + +++ ++G + + IV A+V+ G +S +SPI
Sbjct: 66 QYTIDNAEIVDDSNISVDEIGMSSKITIKRLDTGKIETFTIVSTNHANVREGKISDASPI 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A + K +GD+ V+AP GE +E++++
Sbjct: 126 GKAAMKKRVGDVFIVDAPAGELKFEVVEI 154
>gi|212696520|ref|ZP_03304648.1| hypothetical protein ANHYDRO_01058 [Anaerococcus hydrogenalis DSM
7454]
gi|325849676|ref|ZP_08170879.1| transcription elongation factor GreA [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|212676456|gb|EEB36063.1| hypothetical protein ANHYDRO_01058 [Anaerococcus hydrogenalis DSM
7454]
gi|325480017|gb|EGC83095.1| transcription elongation factor GreA [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 157
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 87/142 (61%), Gaps = 1/142 (0%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
K+Q EL + + + RP I + I EAR++GDLSENA+Y AK Q E R+A++E++I A
Sbjct: 16 KLQDELEYLKTKRRPEIAEKIKEARSFGDLSENADYDEAKNEQGEVESRIAKVEDMIRHA 75
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+ + ST + D ++ G+ V + ++ + Y+IVG E++ G +S SP+ ALIGK
Sbjct: 76 KTFEDST-NKDEVSVGSKVLIHDEEFDEDFEYKIVGTAESNPLEGFISNESPVGEALIGK 134
Query: 134 ELGDIISVNAPGGEKTYEILQV 155
+ GD + V P G+ Y I ++
Sbjct: 135 KKGDKVEVATPNGKCYYTIKEI 156
>gi|18034645|gb|AAL57611.1|AF456234_1 transcription cleavage factor GreA [Thermus aquaticus]
Length = 156
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +GF ++Q+EL + +R I +A GDL ENA Y A+ NE
Sbjct: 1 MKKPVYLTPEGFRRLQEELNHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE+++ RA V++ S D++A G V L E SG++ + IVG EAD+ SG +
Sbjct: 61 ARIAQLEDLLARAVVVE-GNGSYDQVALGCQVEL-ETESGERLSLAIVGSHEADIFSGKI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+GK++GD++ + G + Y IL++
Sbjct: 119 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEI 153
>gi|147676597|ref|YP_001210812.1| transcription elongation factor [Pelotomaculum thermopropionicum
SI]
gi|146272694|dbj|BAF58443.1| transcription elongation factor [Pelotomaculum thermopropionicum
SI]
Length = 158
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 88/150 (58%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K++ EL + +R + + I +A +GD++EN+EY+ AK Q EGR+ L
Sbjct: 8 LTVNGLKKLESELELLKSVKRREVAERIKQAIEFGDITENSEYEDAKNEQAFIEGRILTL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A++ID + + ++ G+TV L + GD+ Y IVG EAD + +S SP+
Sbjct: 68 EKMLRNAKIIDDENIGTEVVSIGSTVLLKDLECGDEYKYTIVGSAEADPGANKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
RA++G+ G ++ V P G+ Y+I+ +L
Sbjct: 128 GRAILGQPKGSVVEVTVPAGQLKYQIIDIL 157
>gi|157372858|ref|YP_001480847.1| transcription elongation factor GreB [Serratia proteamaculans 568]
gi|157324622|gb|ABV43719.1| transcription elongation factor GreB [Serratia proteamaculans 568]
Length = 157
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK++QEL + +E+RP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYDKLKQELDYLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+D S ++ FGA V +VE G+ K ++IVG E + +SI SP+
Sbjct: 66 TKCLEQLKVVDHSPQQEGKVFFGAWV-VVENEDGEIKRFRIVGYDEIFGRRDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD +VN P G+ + + ++ ++
Sbjct: 125 ARALLKKEVGDSATVNTPAGDALWYVNEIEYV 156
>gi|153952824|ref|YP_001393589.1| transcription elongation factor GreA [Clostridium kluyveri DSM 555]
gi|219853489|ref|YP_002470611.1| hypothetical protein CKR_0146 [Clostridium kluyveri NBRC 12016]
gi|229485766|sp|A5N4L0|GREA_CLOK5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799556|sp|B9DY72|GREA_CLOK1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|146345705|gb|EDK32241.1| GreA1 [Clostridium kluyveri DSM 555]
gi|219567213|dbj|BAH05197.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 159
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 89/152 (58%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G K++ EL + + +R I + I A ++GDLSEN+EY +AK Q EGR+
Sbjct: 6 KYVMTYEGIKKLENELEYLKTVKRKEITEKIKVALSFGDLSENSEYDSAKNEQAFVEGRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LEN++ A ++D + D + G+ V + + + ++ Y IVG EAD + +S
Sbjct: 66 VQLENMLKNASMVDEDEVPLDIVGIGSIVKVKDYDLDEEVEYLIVGSAEADPINNKISNE 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ + L+GK+ GD+I + P G Y+IL +
Sbjct: 126 SPVGKGLVGKKPGDVIEIQVPDGVSKYKILNI 157
>gi|33152279|ref|NP_873632.1| transcription elongation factor GreB [Haemophilus ducreyi 35000HP]
gi|71152092|sp|Q7VM42|GREB_HAEDU RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|33148502|gb|AAP96021.1| transcription elongation factor [Haemophilus ducreyi 35000HP]
Length = 162
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + QEL++ +EERP++ +++SEA A GD SENAEY K + R+ L
Sbjct: 7 ITRAGWQALDQELKYLWKEERPKVTQSVSEAAALGDRSENAEYIYGKRRLREIDRRIRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ID ++ FGA + L E N G+ Y+IVG E D +SI SP+
Sbjct: 67 SKRLEALQIIDYHPQQAGKVFFGAWIEL-ENNEGEINQYRIVGCDEFDPTKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK + D I V P G+ + I ++ +
Sbjct: 126 ARALIGKCVDDEIEVQTPTGKAVFYINKIWY 156
>gi|325268494|ref|ZP_08135124.1| transcription elongation factor GreA [Prevotella multiformis DSM
16608]
gi|324989022|gb|EGC20975.1| transcription elongation factor GreA [Prevotella multiformis DSM
16608]
Length = 169
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 90/140 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AE+
Sbjct: 17 MSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAEM 76
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +A+++D+S +S D + +TV + + K Y IV + EA+++ +SI +P+
Sbjct: 77 KMTVAQAKIVDVSRLSTDAVQIMSTVEMTNVKTHAKMKYTIVSETEANLKQNKISIKTPV 136
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K++GD + + P G
Sbjct: 137 AQGLLNKKVGDEVDIKIPRG 156
>gi|260588922|ref|ZP_05854835.1| transcription elongation factor GreA [Blautia hansenii DSM 20583]
gi|260540701|gb|EEX21270.1| transcription elongation factor GreA [Blautia hansenii DSM 20583]
Length = 181
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 87/152 (57%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G K+++EL + +R + + I EAR GDLSENAEY AAK+ Q E R+
Sbjct: 26 KTLLTYAGLTKLEEELHDLKVNKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEARI 85
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E I+ AEV+ + D+I+ G V + + ++ ++IVG EA+ G +S
Sbjct: 86 EEIEKILKNAEVVVEDEVDLDKISVGCKVKVYDVEFEEEMEFKIVGSTEANSLEGKISNE 145
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +ALIG GD +SV P G Y+IL +
Sbjct: 146 SPVGKALIGARKGDTVSVEMPAGVMEYKILGI 177
>gi|317494411|ref|ZP_07952825.1| transcription elongation factor GreB [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917661|gb|EFV39006.1| transcription elongation factor GreB [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 158
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITRGGYEKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + ++D S ++ FGA V VE + G K ++IVG E Q +SI SP+
Sbjct: 66 TKCLEQLRIVDYSPQQDGKVFFGAWVE-VENDEGTIKRFRIVGYDEIFGQKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+ KE+GD ++V P GE + + ++
Sbjct: 125 ARALLKKEVGDAVTVMTPAGEAVWYVNEI 153
>gi|304403741|ref|ZP_07385403.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus
YK9]
gi|304346719|gb|EFM12551.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus
YK9]
Length = 159
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 87/153 (56%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+++ +T +G+DK+ EL + R + + + A +YGDL EN+EY +AK Q+ E R
Sbjct: 5 EEVILTQEGYDKLMAELEELKTTTRKELAERLKVAISYGDLKENSEYHSAKNDQSFVETR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LEN+ A ++ + + G TV L + + Y IVG EAD+ + +S
Sbjct: 65 IKTLENMFKHARIVQAEKLDTAVVQVGFTVKLHDVEFDEDVTYTIVGPAEADIMNNKLSY 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ + LIGK +G+ I+V AP G +Y+IL++
Sbjct: 125 ESPLGKELIGKSVGNAITVTAPSGLISYKILEI 157
>gi|157148990|ref|YP_001456309.1| transcription elongation factor GreB [Citrobacter koseri ATCC
BAA-895]
gi|157086195|gb|ABV15873.1| hypothetical protein CKO_04828 [Citrobacter koseri ATCC BAA-895]
Length = 157
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++K++ EL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYEKLKHELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + GD + ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDEGDIRRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ V+ P GE ++ + ++ ++
Sbjct: 121 DSPMARALLKKEVGDLAVVHTPAGEASWYVNEIEYV 156
>gi|261341905|ref|ZP_05969763.1| transcription elongation factor GreB [Enterobacter cancerogenus
ATCC 35316]
gi|288315808|gb|EFC54746.1| transcription elongation factor GreB [Enterobacter cancerogenus
ATCC 35316]
Length = 157
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + GD ++IVG E + +SI
Sbjct: 62 VRYLTKCLEHLKIVDYSPQQEGKVFFGAWVE-IENDDGDTLRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ V PGGE ++ + ++ ++
Sbjct: 121 DSPMARALLKKEVGDLAVVQTPGGEASWYVNEIEYV 156
>gi|322437290|ref|YP_004219502.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX9]
gi|321165017|gb|ADW70722.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX9]
Length = 173
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 88/145 (60%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
K+ +E++ + E + I +A A GDLSENAEY AK+ Q R+ +L+ +
Sbjct: 8 KLAEEIKALEYELTTELPAEIKKAVALGDLSENAEYHMAKQRQVFVNARLGQLKKRMGEL 67
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+++++ + D+ FG+ +++ + ++ YQ+V +E+DV GL+S +SPI RAL+ K
Sbjct: 68 AMVNLANIPHDKTGFGSRITVFDSTKDEEIVYQLVTSEESDVSKGLISTTSPIGRALLNK 127
Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158
E+GD ++V P G++ E+L++ I
Sbjct: 128 EVGDTVTVVTPNGKRELEVLKLATI 152
>gi|295094872|emb|CBK83963.1| Transcription elongation factor [Coprococcus sp. ART55/1]
Length = 165
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 92/148 (62%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K +K++QE+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTKKDIEKMEQEIEYRKCVVRKEKLEAVKEARAQGDLSENFEYYAAKKDKNANERRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ A++ID T + D + TV++ ++ +++ Y++V ADV G VS SPI
Sbjct: 65 DRLVRTADIID-DTSADDEVGIDNTVTVYFEDDDEEETYRVVTSVRADVLDGRVSNVSPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
RA++G ++GD + V GE Y +++
Sbjct: 124 GRAIMGHKVGDRVQVVPEKGEPYYLVIR 151
>gi|83589023|ref|YP_429032.1| GreA/GreB family elongation factor [Moorella thermoacetica ATCC
39073]
gi|83571937|gb|ABC18489.1| GreA/GreB family elongation factor [Moorella thermoacetica ATCC
39073]
Length = 160
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 89/149 (59%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G K+++EL + + +R + + + +A +GD+SEN+EY+ AK Q EGR+ L
Sbjct: 8 LTANGLKKLEEELEYLKTVKRQEVAERLKQAIEFGDISENSEYEDAKNEQAFIEGRILTL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + A+VI S + D ++ G+ V+L + + G++ Y+IVG EAD +S SP+
Sbjct: 68 EKKLRNAKVIVASEVPDDVVSLGSRVTLKDLDEGEEIQYEIVGSMEADPAENRISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+G G+ +++ P G Y+IL +
Sbjct: 128 GKALLGHHTGETVTIQVPAGNLRYQILNI 156
>gi|331083388|ref|ZP_08332500.1| transcription elongation factor greA [Lachnospiraceae bacterium
6_1_63FAA]
gi|330404081|gb|EGG83629.1| transcription elongation factor greA [Lachnospiraceae bacterium
6_1_63FAA]
Length = 160
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 86/150 (57%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G K+++EL + +R + + I EAR GDLSENAEY AAK+ Q E R+
Sbjct: 5 KTLLTYAGLTKLEEELHDLKVNKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEARI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E I+ AEV+ + D+I+ G V + + ++ ++IVG EA+ G +S
Sbjct: 65 EEIEKILKNAEVVVEDEVDLDKISVGCKVKVYDVEFEEEMEFKIVGSTEANSLEGKISNE 124
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153
SP+ +ALIG GD +SV P G Y+IL
Sbjct: 125 SPVGKALIGARKGDTVSVEMPAGVMEYKIL 154
>gi|304440038|ref|ZP_07399931.1| transcription elongation factor GreA [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371530|gb|EFM25143.1| transcription elongation factor GreA [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 164
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 88/155 (56%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E
Sbjct: 8 MEKDIFFTPEGLEKIENEIEFLKTVRRKEVAERIKIALGYGDLSENSEYDEAKNEQAQVE 67
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +LEN++ A VI+ ++ + + G+TVS+ + NS + Y IVG E+ G +
Sbjct: 68 ERIVKLENMVRNAVVIESDDLNTEIVNIGSTVSVKDINSDKESTYTIVGSAESSPLEGKI 127
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ LIGK++GD++ + P G T EI+ +
Sbjct: 128 SNESPVGSGLIGKKIGDVVDIEVPKGTITLEIMNI 162
>gi|300919309|ref|ZP_07135822.1| transcription elongation factor GreB [Escherichia coli MS 115-1]
gi|300413604|gb|EFJ96914.1| transcription elongation factor GreB [Escherichia coli MS 115-1]
Length = 153
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150
>gi|191167876|ref|ZP_03029680.1| transcription elongation factor GreB [Escherichia coli B7A]
gi|190902049|gb|EDV61794.1| transcription elongation factor GreB [Escherichia coli B7A]
Length = 158
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGETSWYV 150
>gi|301050385|ref|ZP_07197272.1| transcription elongation factor GreB [Escherichia coli MS 185-1]
gi|300297895|gb|EFJ54280.1| transcription elongation factor GreB [Escherichia coli MS 185-1]
Length = 161
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150
>gi|238765202|ref|ZP_04626133.1| Transcription elongation factor greB [Yersinia kristensenii ATCC
33638]
gi|238696585|gb|EEP89371.1| Transcription elongation factor greB [Yersinia kristensenii ATCC
33638]
Length = 165
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWQALDRELHYLWREERPIVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+D ++ FGA V VE S +++ +++VG E D +SI SP+
Sbjct: 67 TKRLEVLKVVDPDPRQEGKVYFGAWVR-VENESEEQRIFRLVGPDEFDPAKKWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D ++V P GE TY IL++
Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILEI 154
>gi|288928758|ref|ZP_06422604.1| transcription elongation factor GreA [Prevotella sp. oral taxon 317
str. F0108]
gi|288329742|gb|EFC68327.1| transcription elongation factor GreA [Prevotella sp. oral taxon 317
str. F0108]
Length = 154
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 87/140 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G++K+ ELR + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ +L
Sbjct: 4 MSQEGYEKLVAELRRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINKL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A+++D S +S D + + V + + K Y IV + EA+++ G ++I++PI
Sbjct: 64 KVAINEAKIVDTSRLSSDAVQILSKVQMTNLTTKAKMTYTIVSESEANLKEGKIAITTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K+ GD + + P G
Sbjct: 124 AQGLLNKKEGDEVEITIPRG 143
>gi|218295530|ref|ZP_03496343.1| transcription elongation factor GreA [Thermus aquaticus Y51MC23]
gi|218244162|gb|EED10688.1| transcription elongation factor GreA [Thermus aquaticus Y51MC23]
Length = 156
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +GF ++Q+EL + +R I +A GDL ENA Y A+ NE
Sbjct: 1 MKKPVYLTPEGFRRLQEELNHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE+++ RA +++ S D++A G V L E SG++ + IVG EAD+ SG +
Sbjct: 61 ARIAQLEDLLARAVIVE-GNGSYDQVALGCQVEL-ETESGERLSLAIVGSHEADIFSGKI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+GK++GD++ + G + Y IL++
Sbjct: 119 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEI 153
>gi|89110604|ref|AP_004384.1| transcription elongation factor [Escherichia coli str. K-12 substr.
W3110]
gi|90111587|ref|YP_026216.2| transcript cleavage factor [Escherichia coli str. K-12 substr.
MG1655]
gi|157162883|ref|YP_001460201.1| transcription elongation factor GreB [Escherichia coli HS]
gi|170018358|ref|YP_001723312.1| transcription elongation factor GreB [Escherichia coli ATCC 8739]
gi|170082923|ref|YP_001732243.1| transcription elongation factor [Escherichia coli str. K-12 substr.
DH10B]
gi|188492838|ref|ZP_03000108.1| transcription elongation factor GreB [Escherichia coli 53638]
gi|193068770|ref|ZP_03049730.1| transcription elongation factor GreB [Escherichia coli E110019]
gi|194431145|ref|ZP_03063438.1| transcription elongation factor GreB [Shigella dysenteriae 1012]
gi|194435634|ref|ZP_03067737.1| transcription elongation factor GreB [Escherichia coli 101-1]
gi|209920862|ref|YP_002294946.1| transcription elongation factor GreB [Escherichia coli SE11]
gi|218555955|ref|YP_002388868.1| transcription elongation factor GreB [Escherichia coli IAI1]
gi|238902497|ref|YP_002928293.1| transcription elongation factor [Escherichia coli BW2952]
gi|253771765|ref|YP_003034596.1| transcription elongation factor GreB [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|256020750|ref|ZP_05434615.1| transcription elongation factor GreB [Shigella sp. D9]
gi|256025866|ref|ZP_05439731.1| transcription elongation factor GreB [Escherichia sp. 4_1_40B]
gi|301023124|ref|ZP_07186930.1| transcription elongation factor GreB [Escherichia coli MS 196-1]
gi|312972330|ref|ZP_07786504.1| transcription elongation factor GreB [Escherichia coli 1827-70]
gi|544419|sp|P30128|GREB_ECOLI RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|1763682|gb|AAB39763.1| GreB [Escherichia coli]
gi|85676635|dbj|BAE77885.1| transcription elongation factor [Escherichia coli str. K12 substr.
W3110]
gi|87082261|gb|AAC76431.2| transcript cleavage factor [Escherichia coli str. K-12 substr.
MG1655]
gi|157068563|gb|ABV07818.1| transcription elongation factor GreB [Escherichia coli HS]
gi|169753286|gb|ACA75985.1| transcription elongation factor GreB [Escherichia coli ATCC 8739]
gi|169890758|gb|ACB04465.1| transcription elongation factor [Escherichia coli str. K-12 substr.
DH10B]
gi|188488037|gb|EDU63140.1| transcription elongation factor GreB [Escherichia coli 53638]
gi|192957846|gb|EDV88289.1| transcription elongation factor GreB [Escherichia coli E110019]
gi|194420600|gb|EDX36676.1| transcription elongation factor GreB [Shigella dysenteriae 1012]
gi|194425177|gb|EDX41161.1| transcription elongation factor GreB [Escherichia coli 101-1]
gi|209914121|dbj|BAG79195.1| transcription elongation factor GreB [Escherichia coli SE11]
gi|218362723|emb|CAR00349.1| transcription elongation factor [Escherichia coli IAI1]
gi|238863678|gb|ACR65676.1| transcription elongation factor [Escherichia coli BW2952]
gi|253322809|gb|ACT27411.1| transcription elongation factor GreB [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260447575|gb|ACX37997.1| transcription elongation factor GreB [Escherichia coli DH1]
gi|299880978|gb|EFI89189.1| transcription elongation factor GreB [Escherichia coli MS 196-1]
gi|309703817|emb|CBJ03158.1| transcription elongation factor [Escherichia coli ETEC H10407]
gi|310334707|gb|EFQ00912.1| transcription elongation factor GreB [Escherichia coli 1827-70]
gi|315137982|dbj|BAJ45141.1| transcription elongation factor greB [Escherichia coli DH1]
gi|315614674|gb|EFU95314.1| transcription elongation factor GreB [Escherichia coli 3431]
gi|320181896|gb|EFW56802.1| Transcription elongation factor GreB [Shigella boydii ATCC 9905]
gi|320199576|gb|EFW74166.1| Transcription elongation factor GreB [Escherichia coli EC4100B]
gi|323934604|gb|EGB31004.1| transcription elongation protein GreB [Escherichia coli E1520]
gi|323939374|gb|EGB35585.1| transcription elongation proteinGreB [Escherichia coli E482]
gi|323959594|gb|EGB55246.1| transcription elongation proteinGreB [Escherichia coli H489]
gi|323970004|gb|EGB65279.1| transcription elongation proteinGreB [Escherichia coli TA007]
gi|324116399|gb|EGC10318.1| transcription elongation proteinGreB [Escherichia coli E1167]
gi|332085554|gb|EGI90720.1| transcription elongation factor GreB [Shigella boydii 5216-82]
gi|332085689|gb|EGI90853.1| transcription elongation factor GreB [Shigella dysenteriae 155-74]
gi|332345358|gb|AEE58692.1| transcription elongation factor GreB [Escherichia coli UMNK88]
Length = 158
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150
>gi|300907452|ref|ZP_07125097.1| transcription elongation factor GreB [Escherichia coli MS 84-1]
gi|300400790|gb|EFJ84328.1| transcription elongation factor GreB [Escherichia coli MS 84-1]
Length = 162
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFDRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYV 162
>gi|169830348|ref|YP_001716330.1| transcription elongation factor GreA [Candidatus Desulforudis
audaxviator MP104C]
gi|169637192|gb|ACA58698.1| transcription elongation factor GreA [Candidatus Desulforudis
audaxviator MP104C]
Length = 163
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 90/149 (60%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K+++EL + + +R + + I +A +GD+++++EY+ AK Q EGR+ L
Sbjct: 10 LTVAGLRKLERELEYLKMVKRREVAERIKQAIEFGDITDSSEYEDAKNEQAFIEGRIITL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + A+VID + + + G+TV L + N G++ Y IVG E+D +S +S SP+
Sbjct: 70 EKALRNAKVIDAEDVGTEEVGIGSTVRLKDLNGGEELQYTIVGSMESDPRSNKISDESPV 129
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
RA++G+ +G+I+ + P G Y+I+ +
Sbjct: 130 GRAMLGQRVGNIVEIQVPAGTLKYQIIDI 158
>gi|251793288|ref|YP_003008016.1| transcription elongation factor GreB [Aggregatibacter aphrophilus
NJ8700]
gi|247534683|gb|ACS97929.1| transcription elongation factor GreB [Aggregatibacter aphrophilus
NJ8700]
Length = 159
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWNVLDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S +I FGA V L E G+ K Y++VG E D +SI SP+
Sbjct: 67 TKRLEVLQIVDYSPKQEGKIFFGAWVEL-ENEDGEVKQYRLVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGE 147
ARALIGKE D I+V+ P G+
Sbjct: 126 ARALIGKEEEDEITVDTPSGK 146
>gi|303232444|ref|ZP_07319136.1| putative transcription elongation factor GreA [Atopobium vaginae
PB189-T1-4]
gi|302481528|gb|EFL44596.1| putative transcription elongation factor GreA [Atopobium vaginae
PB189-T1-4]
Length = 157
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 89/151 (58%), Gaps = 5/151 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+TS+G K+ EL WR+ E+ I++ + EAR +GDLSEN+EY AAKE Q+ NE R+ E+
Sbjct: 8 LTSEGRQKLVDELTWREGEKHEEIVERLKEARGFGDLSENSEYDAAKEEQSQNESRINEI 67
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I+ A+V++ M+G+ ++ G V L++ + G + IVG E D + +S SP
Sbjct: 68 RQILATAKVVE--HMAGELTVSIGTKVKLID-DKGKTNTFTIVGTTETDSLAHKISNESP 124
Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQV 155
LIG +GD I P G+ K Y I ++
Sbjct: 125 AGAELIGHVVGDSIEFATPAGKTKHYTITEI 155
>gi|187730872|ref|YP_001882083.1| transcription elongation factor GreB [Shigella boydii CDC 3083-94]
gi|187427864|gb|ACD07138.1| transcription elongation factor GreB [Shigella boydii CDC 3083-94]
Length = 158
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150
>gi|82545761|ref|YP_409708.1| transcription elongation factor GreB [Shigella boydii Sb227]
gi|82778777|ref|YP_405126.1| transcription elongation factor GreB [Shigella dysenteriae Sd197]
gi|110643639|ref|YP_671369.1| transcription elongation factor GreB [Escherichia coli 536]
gi|117625673|ref|YP_858996.1| transcription elongation factor GreB [Escherichia coli APEC O1]
gi|157155011|ref|YP_001464863.1| transcription elongation factor GreB [Escherichia coli E24377A]
gi|161367507|ref|NP_289946.2| transcription elongation factor GreB [Escherichia coli O157:H7
EDL933]
gi|161486092|ref|NP_756047.2| transcription elongation factor GreB [Escherichia coli CFT073]
gi|162139752|ref|NP_312275.2| transcription elongation factor GreB [Escherichia coli O157:H7 str.
Sakai]
gi|168747116|ref|ZP_02772138.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4113]
gi|168753159|ref|ZP_02778166.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4401]
gi|168759431|ref|ZP_02784438.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4501]
gi|168765754|ref|ZP_02790761.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4486]
gi|168772702|ref|ZP_02797709.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4196]
gi|168779490|ref|ZP_02804497.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4076]
gi|168785211|ref|ZP_02810218.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC869]
gi|168797177|ref|ZP_02822184.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC508]
gi|170680405|ref|YP_001745654.1| transcription elongation factor GreB [Escherichia coli SMS-3-5]
gi|191171514|ref|ZP_03033062.1| transcription elongation factor GreB [Escherichia coli F11]
gi|193061828|ref|ZP_03042925.1| transcription elongation factor GreB [Escherichia coli E22]
gi|194426931|ref|ZP_03059483.1| transcription elongation factor GreB [Escherichia coli B171]
gi|195934895|ref|ZP_03080277.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4024]
gi|208806096|ref|ZP_03248433.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4206]
gi|208813018|ref|ZP_03254347.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4045]
gi|208821026|ref|ZP_03261346.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4042]
gi|209400461|ref|YP_002272841.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4115]
gi|215488687|ref|YP_002331118.1| transcription elongation factor GreB [Escherichia coli O127:H6 str.
E2348/69]
gi|217325218|ref|ZP_03441302.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
TW14588]
gi|218550664|ref|YP_002384455.1| transcription elongation factor GreB [Escherichia fergusonii ATCC
35469]
gi|218560464|ref|YP_002393377.1| transcription elongation factor GreB [Escherichia coli S88]
gi|218691683|ref|YP_002399895.1| transcription elongation factor GreB [Escherichia coli ED1a]
gi|218697089|ref|YP_002404756.1| transcription elongation factor GreB [Escherichia coli 55989]
gi|218702151|ref|YP_002409780.1| transcription elongation factor GreB [Escherichia coli IAI39]
gi|218706997|ref|YP_002414516.1| transcription elongation factor GreB [Escherichia coli UMN026]
gi|254795321|ref|YP_003080158.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
TW14359]
gi|260846190|ref|YP_003223968.1| transcription elongation factor GreB [Escherichia coli O103:H2 str.
12009]
gi|260857513|ref|YP_003231404.1| transcription elongation factor GreB [Escherichia coli O26:H11 str.
11368]
gi|260870132|ref|YP_003236534.1| transcription elongation factor GreB [Escherichia coli O111:H- str.
11128]
gi|261224687|ref|ZP_05938968.1| transcription elongation factor [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254418|ref|ZP_05946951.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
FRIK966]
gi|291284742|ref|YP_003501560.1| Transcription elongation factor greB [Escherichia coli O55:H7 str.
CB9615]
gi|293406984|ref|ZP_06650908.1| greB [Escherichia coli FVEC1412]
gi|293412823|ref|ZP_06655491.1| transcription elongation factor GreB [Escherichia coli B354]
gi|293416808|ref|ZP_06659445.1| transcription elongation factor GreB [Escherichia coli B185]
gi|293453712|ref|ZP_06664131.1| transcription elongation factor GreB [Escherichia coli B088]
gi|298382726|ref|ZP_06992321.1| transcription elongation factor GreB [Escherichia coli FVEC1302]
gi|306816256|ref|ZP_07450394.1| transcription elongation factor GreB [Escherichia coli NC101]
gi|307311930|ref|ZP_07591568.1| GreA/GreB family elongation factor [Escherichia coli W]
gi|309785849|ref|ZP_07680480.1| transcription elongation factor GreB [Shigella dysenteriae 1617]
gi|331659695|ref|ZP_08360633.1| transcription elongation factor GreB [Escherichia coli TA206]
gi|331665011|ref|ZP_08365912.1| transcription elongation factor GreB [Escherichia coli TA143]
gi|331670228|ref|ZP_08371067.1| transcription elongation factor GreB [Escherichia coli TA271]
gi|331685046|ref|ZP_08385632.1| transcription elongation factor GreB [Escherichia coli H299]
gi|54037215|sp|P64274|GREB_ECO57 RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|54041323|sp|P64273|GREB_ECOL6 RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|166007061|pdb|2P4V|A Chain A, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
gi|166007062|pdb|2P4V|B Chain B, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
gi|166007063|pdb|2P4V|C Chain C, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
gi|166007064|pdb|2P4V|D Chain D, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
gi|166007065|pdb|2P4V|E Chain E, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
gi|166007066|pdb|2P4V|F Chain F, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
gi|81242925|gb|ABB63635.1| transcription elongation factor [Shigella dysenteriae Sd197]
gi|81247172|gb|ABB67880.1| Transcription elongation factor [Shigella boydii Sb227]
gi|110345231|gb|ABG71468.1| transcription elongation factor GreB [Escherichia coli 536]
gi|115514797|gb|ABJ02872.1| transcription elongation factor GreB [Escherichia coli APEC O1]
gi|157077041|gb|ABV16749.1| transcription elongation factor GreB [Escherichia coli E24377A]
gi|170518123|gb|ACB16301.1| transcription elongation factor GreB [Escherichia coli SMS-3-5]
gi|187771428|gb|EDU35272.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4196]
gi|188018359|gb|EDU56481.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4113]
gi|189002402|gb|EDU71388.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4076]
gi|189358929|gb|EDU77348.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4401]
gi|189364381|gb|EDU82800.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4486]
gi|189369538|gb|EDU87954.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4501]
gi|189374281|gb|EDU92697.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC869]
gi|189380006|gb|EDU98422.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC508]
gi|190908141|gb|EDV67732.1| transcription elongation factor GreB [Escherichia coli F11]
gi|192932618|gb|EDV85215.1| transcription elongation factor GreB [Escherichia coli E22]
gi|194414892|gb|EDX31162.1| transcription elongation factor GreB [Escherichia coli B171]
gi|208725897|gb|EDZ75498.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4206]
gi|208734295|gb|EDZ82982.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4045]
gi|208741149|gb|EDZ88831.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4042]
gi|209161861|gb|ACI39294.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4115]
gi|215266759|emb|CAS11199.1| transcription elongation factor [Escherichia coli O127:H6 str.
E2348/69]
gi|217321439|gb|EEC29863.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
TW14588]
gi|218353821|emb|CAV00173.1| transcription elongation factor [Escherichia coli 55989]
gi|218358205|emb|CAQ90852.1| transcription elongation factor [Escherichia fergusonii ATCC 35469]
gi|218367233|emb|CAR05007.1| transcription elongation factor [Escherichia coli S88]
gi|218372137|emb|CAR19999.1| transcription elongation factor [Escherichia coli IAI39]
gi|218429247|emb|CAR10203.2| transcription elongation factor [Escherichia coli ED1a]
gi|218434094|emb|CAR15011.1| transcription elongation factor [Escherichia coli UMN026]
gi|222035108|emb|CAP77853.1| Transcription elongation factor greB [Escherichia coli LF82]
gi|254594721|gb|ACT74082.1| transcription elongation factor [Escherichia coli O157:H7 str.
TW14359]
gi|257756162|dbj|BAI27664.1| transcription elongation factor GreB [Escherichia coli O26:H11 str.
11368]
gi|257761337|dbj|BAI32834.1| transcription elongation factor GreB [Escherichia coli O103:H2 str.
12009]
gi|257766488|dbj|BAI37983.1| transcription elongation factor GreB [Escherichia coli O111:H- str.
11128]
gi|281180438|dbj|BAI56768.1| transcription elongation factor GreB [Escherichia coli SE15]
gi|284923398|emb|CBG36492.1| transcription elongation factor [Escherichia coli 042]
gi|290764615|gb|ADD58576.1| Transcription elongation factor greB [Escherichia coli O55:H7 str.
CB9615]
gi|291321838|gb|EFE61269.1| transcription elongation factor GreB [Escherichia coli B088]
gi|291425795|gb|EFE98829.1| greB [Escherichia coli FVEC1412]
gi|291431384|gb|EFF04369.1| transcription elongation factor GreB [Escherichia coli B185]
gi|291468470|gb|EFF10963.1| transcription elongation factor GreB [Escherichia coli B354]
gi|294493288|gb|ADE92044.1| transcription elongation factor GreB [Escherichia coli IHE3034]
gi|298276562|gb|EFI18080.1| transcription elongation factor GreB [Escherichia coli FVEC1302]
gi|305850652|gb|EFM51109.1| transcription elongation factor GreB [Escherichia coli NC101]
gi|306908074|gb|EFN38574.1| GreA/GreB family elongation factor [Escherichia coli W]
gi|307555492|gb|ADN48267.1| transcription elongation factor and transcript cleavage
[Escherichia coli ABU 83972]
gi|307628467|gb|ADN72771.1| transcription elongation factor GreB [Escherichia coli UM146]
gi|308926969|gb|EFP72445.1| transcription elongation factor GreB [Shigella dysenteriae 1617]
gi|312947954|gb|ADR28781.1| transcription elongation factor GreB [Escherichia coli O83:H1 str.
NRG 857C]
gi|315062685|gb|ADT77012.1| transcription elongation factor [Escherichia coli W]
gi|320175773|gb|EFW50859.1| Transcription elongation factor GreB [Shigella dysenteriae CDC
74-1112]
gi|320186724|gb|EFW61447.1| Transcription elongation factor GreB [Shigella flexneri CDC 796-83]
gi|320191583|gb|EFW66233.1| Transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC1212]
gi|320197364|gb|EFW71979.1| Transcription elongation factor GreB [Escherichia coli WV_060327]
gi|320639688|gb|EFX09282.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
G5101]
gi|320645186|gb|EFX14202.1| transcription elongation factor GreB [Escherichia coli O157:H- str.
493-89]
gi|320650497|gb|EFX18963.1| transcription elongation factor GreB [Escherichia coli O157:H- str.
H 2687]
gi|320655689|gb|EFX23612.1| transcription elongation factor GreB [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320661473|gb|EFX28888.1| transcription elongation factor GreB [Escherichia coli O55:H7 str.
USDA 5905]
gi|320666496|gb|EFX33479.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
LSU-61]
gi|323154239|gb|EFZ40442.1| transcription elongation factor GreB [Escherichia coli EPECa14]
gi|323162791|gb|EFZ48628.1| transcription elongation factor GreB [Escherichia coli E128010]
gi|323174039|gb|EFZ59667.1| transcription elongation factor GreB [Escherichia coli LT-68]
gi|323179069|gb|EFZ64643.1| transcription elongation factor GreB [Escherichia coli 1180]
gi|323182866|gb|EFZ68267.1| transcription elongation factor GreB [Escherichia coli 1357]
gi|323189005|gb|EFZ74289.1| transcription elongation factor GreB [Escherichia coli RN587/1]
gi|323376727|gb|ADX48995.1| transcription elongation factor GreB [Escherichia coli KO11]
gi|323944372|gb|EGB40447.1| transcription elongation protein GreB [Escherichia coli H120]
gi|323950063|gb|EGB45946.1| transcription elongation proteinGreB [Escherichia coli H252]
gi|323954657|gb|EGB50439.1| transcription elongation proteinGreB [Escherichia coli H263]
gi|323966219|gb|EGB61655.1| transcription elongation proteinGreB [Escherichia coli M863]
gi|323974790|gb|EGB69902.1| transcription elongation proteinGreB [Escherichia coli TW10509]
gi|324111718|gb|EGC05698.1| transcription elongation proteinGreB [Escherichia fergusonii B253]
gi|326337631|gb|EGD61466.1| Transcription elongation factor GreB [Escherichia coli O157:H7 str.
1044]
gi|326344618|gb|EGD68367.1| Transcription elongation factor GreB [Escherichia coli O157:H7 str.
1125]
gi|327251041|gb|EGE62734.1| transcription elongation factor GreB [Escherichia coli STEC_7v]
gi|330909439|gb|EGH37953.1| transcription elongation factor GreB [Escherichia coli AA86]
gi|331052910|gb|EGI24943.1| transcription elongation factor GreB [Escherichia coli TA206]
gi|331057521|gb|EGI29507.1| transcription elongation factor GreB [Escherichia coli TA143]
gi|331062290|gb|EGI34210.1| transcription elongation factor GreB [Escherichia coli TA271]
gi|331077417|gb|EGI48629.1| transcription elongation factor GreB [Escherichia coli H299]
gi|332090241|gb|EGI95339.1| transcription elongation factor GreB [Shigella boydii 3594-74]
Length = 158
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150
>gi|309794676|ref|ZP_07689098.1| transcription elongation factor GreB [Escherichia coli MS 145-7]
gi|308121726|gb|EFO58988.1| transcription elongation factor GreB [Escherichia coli MS 145-7]
Length = 170
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGETSWYV 162
>gi|301302284|ref|ZP_07208416.1| transcription elongation factor GreB [Escherichia coli MS 124-1]
gi|300842447|gb|EFK70207.1| transcription elongation factor GreB [Escherichia coli MS 124-1]
gi|315255996|gb|EFU35964.1| transcription elongation factor GreB [Escherichia coli MS 85-1]
Length = 170
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFDRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYV 162
>gi|146295865|ref|YP_001179636.1| transcription elongation factor GreA [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409441|gb|ABP66445.1| transcription elongation factor GreA [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 162
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 91/152 (59%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+
Sbjct: 9 KFQLSREAYEKYLKELENLKTVKRKEVAEKIKIARSFGDLSENSEYDEAKAEQAALEERI 68
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A LE +I A++ID +S D + G V + ++G+ Y IVG +EA+ +S
Sbjct: 69 AYLEKLINNAKIIDKDEVSTDFVGIGTNVKIQNVDTGEIVEYSIVGSKEANPFEFKISDE 128
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +ALIGK++G+++ V P G+ Y+IL++
Sbjct: 129 SPVGKALIGKKVGEVVEVTVPAGKFRYKILEI 160
>gi|169834166|ref|YP_001694924.1| transcription elongation factor GreA [Streptococcus pneumoniae
Hungary19A-6]
gi|238688370|sp|B1ICT9|GREA_STRPI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|168996668|gb|ACA37280.1| transcription elongation factor GreA [Streptococcus pneumoniae
Hungary19A-6]
Length = 160
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 82/129 (63%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD +G VS SPI + LIGK+ GD ++ P G
Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQDLIGKKTGDTATIETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|150392207|ref|YP_001322256.1| transcription elongation factor GreA [Alkaliphilus metalliredigens
QYMF]
gi|149952069|gb|ABR50597.1| transcription elongation factor GreA [Alkaliphilus metalliredigens
QYMF]
Length = 158
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 91/152 (59%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
++ +T++G KI+ +L + R + I +A A+GDLSEN+EY AK Q E R+
Sbjct: 5 EVLLTAQGLKKIEDDLEQLKTVRRREVAGRIKQAIAFGDLSENSEYDEAKNEQAQVEERI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A+LEN++ +A VID S +S D ++ G TV + + + Y IVG EAD +S
Sbjct: 65 AKLENMLRKARVIDESEISSDVVSIGTTVEVKDLEYDEIVEYTIVGSAEADPYELRISNE 124
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ R L+G+++G+++ + P G Y++L++
Sbjct: 125 SPVGRTLLGRKVGEVVDIQIPDGVTQYKVLKI 156
>gi|313894662|ref|ZP_07828225.1| transcription elongation factor GreA [Veillonella sp. oral taxon
158 str. F0412]
gi|313440852|gb|EFR59281.1| transcription elongation factor GreA [Veillonella sp. oral taxon
158 str. F0412]
Length = 157
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G K+++EL + + R + + I A YGD+SEN+EY AK Q EG + EL
Sbjct: 9 LTADGLKKLEEELAYYKSVRRIEVSERIKTAIEYGDISENSEYDDAKNEQAFIEGHIVEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN I A++ID ++ GD ++ G+ V +++ D+ Y IVG EAD + +S SP+
Sbjct: 69 ENKINTAKIID-ESVKGDVVSVGSKVIVLDTMYNDELEYVIVGSSEADPFNNRISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++GK GD + V+ P G T+++L +
Sbjct: 128 GKAILGKRKGDEVEVSTPDGPVTFKVLAI 156
>gi|332798250|ref|YP_004459749.1| transcription elongation factor GreA [Tepidanaerobacter sp. Re1]
gi|332695985|gb|AEE90442.1| transcription elongation factor GreA [Tepidanaerobacter sp. Re1]
Length = 158
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 90/152 (59%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T +G K+++EL + + +R I I +A +GD+SEN+EY AK Q EGR+A
Sbjct: 6 VVLTQEGLKKMEEELEYLKSVKRREIAARIKQAIDFGDISENSEYDEAKNEQAFVEGRIA 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE + A++ID +S D ++ G+ V L + ++GD Y IVG EA+ +S S
Sbjct: 66 LLEEKLRNAKLIDEVDISTDVVSVGSKVKLKDLDTGDIFEYMIVGSAEANPIENKISNES 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+ ALIG++ G I+ V+ P G YEI+ ++
Sbjct: 126 PVGNALIGEKKGSIVEVSVPAGIIKYEIMDIM 157
>gi|294638113|ref|ZP_06716370.1| transcription elongation factor GreB [Edwardsiella tarda ATCC
23685]
gi|291088745|gb|EFE21306.1| transcription elongation factor GreB [Edwardsiella tarda ATCC
23685]
Length = 158
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G+DK++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYDKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L ++ +++D S ++ FGA V VE + G K ++IVG E ++ +SI
Sbjct: 62 VRYLRKCMSMLKIVDYSPQQDGKVFFGAWVE-VENDDGVIKRFRIVGYDEIFGRNDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD +V P GE + I
Sbjct: 121 DSPMARALLKKEVGDAATVITPSGEALWYI 150
>gi|331703265|ref|YP_004399952.1| transcription elongation factor [Mycoplasma mycoides subsp. capri
LC str. 95010]
gi|256384044|gb|ACU78614.1| transcription elongation factor GreA [Mycoplasma mycoides subsp.
capri str. GM12]
gi|256384876|gb|ACU79445.1| transcription elongation factor GreA [Mycoplasma mycoides subsp.
capri str. GM12]
gi|296455679|gb|ADH21914.1| transcription elongation factor GreA [synthetic Mycoplasma mycoides
JCVI-syn1.0]
gi|328801820|emb|CBW53973.1| Transcription elongation factor [Mycoplasma mycoides subsp. capri
LC str. 95010]
Length = 157
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 88/142 (61%), Gaps = 1/142 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +T +G ++++ EL++ + RP++I+ + EAR GDLSENA+Y AA+ Q E
Sbjct: 1 MSKEIILTQEGLEELKAELKYLLEVVRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60
Query: 61 GRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ E+E +I RA+VID S T S + G+TV V K +IVG EAD S L
Sbjct: 61 ARIKEVETLINRAKVIDDSKTHSTGEVKIGSTVQFVSSLDNKLKEIKIVGAIEADPFSNL 120
Query: 120 VSISSPIARALIGKELGDIISV 141
+S SPIA+A+IGK++ + +
Sbjct: 121 ISNESPIAKAIIGKKVNTTVEI 142
>gi|254038573|ref|ZP_04872629.1| transcription elongation factor greB [Escherichia sp. 1_1_43]
gi|300815398|ref|ZP_07095623.1| transcription elongation factor GreB [Escherichia coli MS 107-1]
gi|300946852|ref|ZP_07161092.1| transcription elongation factor GreB [Escherichia coli MS 116-1]
gi|300956734|ref|ZP_07169005.1| transcription elongation factor GreB [Escherichia coli MS 175-1]
gi|301645845|ref|ZP_07245760.1| transcription elongation factor GreB [Escherichia coli MS 146-1]
gi|332281953|ref|ZP_08394366.1| transcription elongation factor and transcript cleavage [Shigella
sp. D9]
gi|606340|gb|AAA58203.1| ORF_o170 [Escherichia coli str. K-12 substr. MG1655]
gi|226839079|gb|EEH71102.1| transcription elongation factor greB [Escherichia sp. 1_1_43]
gi|300316490|gb|EFJ66274.1| transcription elongation factor GreB [Escherichia coli MS 175-1]
gi|300453461|gb|EFK17081.1| transcription elongation factor GreB [Escherichia coli MS 116-1]
gi|300532290|gb|EFK53352.1| transcription elongation factor GreB [Escherichia coli MS 107-1]
gi|301075923|gb|EFK90729.1| transcription elongation factor GreB [Escherichia coli MS 146-1]
gi|324018723|gb|EGB87942.1| transcription elongation factor GreB [Escherichia coli MS 117-3]
gi|332104305|gb|EGJ07651.1| transcription elongation factor and transcript cleavage [Shigella
sp. D9]
Length = 170
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 74 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYV 162
>gi|91212881|ref|YP_542867.1| transcription elongation factor GreB [Escherichia coli UTI89]
gi|227883540|ref|ZP_04001345.1| transcription elongation factor GreB [Escherichia coli 83972]
gi|237703136|ref|ZP_04533617.1| transcription elongation factor and transcript cleavage
[Escherichia sp. 3_2_53FAA]
gi|300822797|ref|ZP_07102933.1| transcription elongation factor GreB [Escherichia coli MS 119-7]
gi|300898907|ref|ZP_07117206.1| transcription elongation factor GreB [Escherichia coli MS 198-1]
gi|300926905|ref|ZP_07142670.1| transcription elongation factor GreB [Escherichia coli MS 182-1]
gi|300937297|ref|ZP_07152138.1| transcription elongation factor GreB [Escherichia coli MS 21-1]
gi|300985400|ref|ZP_07177423.1| transcription elongation factor GreB [Escherichia coli MS 45-1]
gi|301019577|ref|ZP_07183737.1| transcription elongation factor GreB [Escherichia coli MS 69-1]
gi|301329711|ref|ZP_07222460.1| transcription elongation factor GreB [Escherichia coli MS 78-1]
gi|331649204|ref|ZP_08350290.1| transcription elongation factor GreB [Escherichia coli M605]
gi|331654983|ref|ZP_08355982.1| transcription elongation factor GreB [Escherichia coli M718]
gi|331674894|ref|ZP_08375651.1| transcription elongation factor GreB [Escherichia coli TA280]
gi|331679470|ref|ZP_08380140.1| transcription elongation factor GreB [Escherichia coli H591]
gi|12518036|gb|AAG58507.1|AE005563_1 transcription elongation factor and transcript cleavage
[Escherichia coli O157:H7 str. EDL933]
gi|26110436|gb|AAN82621.1|AE016768_39 Transcription elongation factor greB [Escherichia coli CFT073]
gi|13363722|dbj|BAB37671.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
Sakai]
gi|91074455|gb|ABE09336.1| transcription elongation factor and transcript cleavage
[Escherichia coli UTI89]
gi|209756508|gb|ACI76566.1| transcription elongation factor GreB [Escherichia coli]
gi|209756510|gb|ACI76567.1| transcription elongation factor GreB [Escherichia coli]
gi|209756512|gb|ACI76568.1| transcription elongation factor GreB [Escherichia coli]
gi|209756514|gb|ACI76569.1| transcription elongation factor GreB [Escherichia coli]
gi|209756516|gb|ACI76570.1| transcription elongation factor GreB [Escherichia coli]
gi|226902400|gb|EEH88659.1| transcription elongation factor and transcript cleavage
[Escherichia sp. 3_2_53FAA]
gi|227839419|gb|EEJ49885.1| transcription elongation factor GreB [Escherichia coli 83972]
gi|300357446|gb|EFJ73316.1| transcription elongation factor GreB [Escherichia coli MS 198-1]
gi|300399165|gb|EFJ82703.1| transcription elongation factor GreB [Escherichia coli MS 69-1]
gi|300408083|gb|EFJ91621.1| transcription elongation factor GreB [Escherichia coli MS 45-1]
gi|300417088|gb|EFK00399.1| transcription elongation factor GreB [Escherichia coli MS 182-1]
gi|300457620|gb|EFK21113.1| transcription elongation factor GreB [Escherichia coli MS 21-1]
gi|300524563|gb|EFK45632.1| transcription elongation factor GreB [Escherichia coli MS 119-7]
gi|300844223|gb|EFK71983.1| transcription elongation factor GreB [Escherichia coli MS 78-1]
gi|315291670|gb|EFU51026.1| transcription elongation factor GreB [Escherichia coli MS 153-1]
gi|315295897|gb|EFU55210.1| transcription elongation factor GreB [Escherichia coli MS 16-3]
gi|325498948|gb|EGC96807.1| transcription elongation factor GreB [Escherichia fergusonii
ECD227]
gi|331041702|gb|EGI13846.1| transcription elongation factor GreB [Escherichia coli M605]
gi|331046998|gb|EGI19076.1| transcription elongation factor GreB [Escherichia coli M718]
gi|331067803|gb|EGI39201.1| transcription elongation factor GreB [Escherichia coli TA280]
gi|331072642|gb|EGI43967.1| transcription elongation factor GreB [Escherichia coli H591]
Length = 170
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYV 162
>gi|238751148|ref|ZP_04612643.1| Transcription elongation factor greB [Yersinia rohdei ATCC 43380]
gi|238710626|gb|EEQ02849.1| Transcription elongation factor greB [Yersinia rohdei ATCC 43380]
Length = 169
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L
Sbjct: 11 ITREGWQALDTELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V VE SG+++ +++VG E D +SI SP+
Sbjct: 71 TKRLEVLKIVDPDPRQEGKVYFGAWVR-VENESGEQRIFRLVGPDEFDPAKKWISIDSPV 129
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D ++V P GE Y IL++
Sbjct: 130 ARALIGKQVDDEVTVQTPNGEAIYCILEI 158
>gi|15603315|ref|NP_246389.1| transcription elongation factor GreB [Pasteurella multocida subsp.
multocida str. Pm70]
gi|13431537|sp|P57802|GREB_PASMU RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|12721829|gb|AAK03534.1| GreB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 158
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++ + QEL++ ++ERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRSGWNALDQELKFLWKDERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V+L E +G++K+Y+IVG E D +SI SP+
Sbjct: 67 TKRLEVLQIVDYHPKQEGKVFFGAWVAL-ENEAGEEKHYRIVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGK + D I V P G
Sbjct: 126 ARALIGKSIDDEIKVETPSG 145
>gi|322381160|ref|ZP_08055163.1| transcription elongation factor GreA-like protein [Paenibacillus
larvae subsp. larvae B-3650]
gi|321154736|gb|EFX47007.1| transcription elongation factor GreA-like protein [Paenibacillus
larvae subsp. larvae B-3650]
Length = 170
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 87/151 (57%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T +G K++ EL + +R + + I A YGD+SEN+EY+ AK Q EGR+
Sbjct: 18 VILTQEGLSKLENELDHLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFIEGRII 77
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ A +I+ + D ++ G+TV++ + GD Y IVG E+D +S S
Sbjct: 78 TLEKMLRNARIINSDDVDTDTVSVGSTVTMKDLEFGDTVEYTIVGTAESDPFLNKISNES 137
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ +A++GK+ G I+ VN P G YEI+ +
Sbjct: 138 PVGKAILGKQKGAIVDVNVPAGVIKYEIIDI 168
>gi|261867402|ref|YP_003255324.1| transcription elongation factor GreB [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412734|gb|ACX82105.1| transcription elongation factor GreB [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 160
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ + +EL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWNMLDRELKFLWKEERPQVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V L E G+ K Y+IVG E D + +SI SP+
Sbjct: 67 TKRLEVLQIVDYSPKQESKVFFGAWVEL-ENEDGEVKQYRIVGCDEFDPANNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK+ D I+V+ P G K + + +W
Sbjct: 126 ARALIGKQEDDEITVDTPAG-KIWLCVNRIW 155
>gi|110807238|ref|YP_690758.1| transcription elongation factor GreB [Shigella flexneri 5 str.
8401]
gi|161485871|ref|NP_709179.2| transcription elongation factor GreB [Shigella flexneri 2a str.
301]
gi|161486379|ref|NP_839482.2| transcription elongation factor GreB [Shigella flexneri 2a str.
2457T]
gi|110616786|gb|ABF05453.1| Transcription elongation factor [Shigella flexneri 5 str. 8401]
gi|281602756|gb|ADA75740.1| Transcription elongation factor and transcript cleavage factor
[Shigella flexneri 2002017]
gi|313647298|gb|EFS11750.1| transcription elongation factor GreB [Shigella flexneri 2a str.
2457T]
gi|332749495|gb|EGJ79912.1| transcription elongation factor GreB [Shigella flexneri K-671]
gi|332750345|gb|EGJ80756.1| transcription elongation factor GreB [Shigella flexneri 4343-70]
gi|332751378|gb|EGJ81781.1| transcription elongation factor GreB [Shigella flexneri 2747-71]
gi|332763611|gb|EGJ93850.1| transcription elongation factor GreB [Shigella flexneri 2930-71]
gi|332996406|gb|EGK16033.1| transcription elongation factor GreB [Shigella flexneri VA-6]
gi|332996647|gb|EGK16272.1| transcription elongation factor GreB [Shigella flexneri K-272]
gi|332997483|gb|EGK17099.1| transcription elongation factor GreB [Shigella flexneri K-218]
gi|333012511|gb|EGK31892.1| transcription elongation factor GreB [Shigella flexneri K-304]
gi|333013054|gb|EGK32430.1| transcription elongation factor GreB [Shigella flexneri K-227]
Length = 158
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE + +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEANWYV 150
>gi|134298052|ref|YP_001111548.1| transcription elongation factor GreA [Desulfotomaculum reducens
MI-1]
gi|134050752|gb|ABO48723.1| transcription elongation factor GreA [Desulfotomaculum reducens
MI-1]
Length = 158
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 89/152 (58%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T G +++ EL + +R ++ + I +A +GD+SEN+EY+ AK Q EGR+
Sbjct: 6 VMLTVTGLKQLEDELEQLKTVKRRQVAERIKQAIEFGDISENSEYEDAKNEQAFIEGRIL 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ A++ID + + ++ G+ V L + GD+ Y IVG EAD + +S S
Sbjct: 66 TLEKMLRNAKIIDDENLDNEVVSLGSKVILKDLEFGDELEYSIVGSVEADPDANKISNES 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+ RA++G+ G ++ VN P G YEI+ +L
Sbjct: 126 PVGRAILGQSKGSVVEVNVPAGILKYEIVDIL 157
>gi|329121808|ref|ZP_08250424.1| transcription elongation factor GreA [Dialister micraerophilus DSM
19965]
gi|327468081|gb|EGF13569.1| transcription elongation factor GreA [Dialister micraerophilus DSM
19965]
Length = 162
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 88/146 (60%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +K+Q+EL + ++R + + + EA + GDLSEN+EY AK Q+ EGR+ EL
Sbjct: 9 VTREGLEKMQKELDELRSKKRGEVAQRLKEAISMGDLSENSEYDDAKNEQSFVEGRILEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I R V+ G R+ +TV++ + + G ++ IVG E+D G +S SP
Sbjct: 69 ETKI-RTAVLISQKKKGGRVDLASTVTIQDMSDGSEETVTIVGSTESDPFEGKISNESPA 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
RAL+G +LGDI+ V+AP G Y+I
Sbjct: 128 GRALMGSKLGDIVEVDAPTGIIKYKI 153
>gi|170766595|ref|ZP_02901048.1| transcription elongation factor GreB [Escherichia albertii TW07627]
gi|170124033|gb|EDS92964.1| transcription elongation factor GreB [Escherichia albertii TW07627]
Length = 158
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 121 DSPMARALLKKEVGDLAIVNTPAGEASWYV 150
>gi|212637544|ref|YP_002314069.1| transcription elongation factor and transcript cleavage [Shewanella
piezotolerans WP3]
gi|212559028|gb|ACJ31482.1| Transcription elongation factor and transcript cleavage [Shewanella
piezotolerans WP3]
Length = 160
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +GFDK+Q+EL + +E RP I K +S A + GD SENA+Y K+ + R+ L
Sbjct: 6 VTREGFDKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKKKLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I +V+D S ++ FGA V +E + G+K++++IVG E ++ +SI SP+
Sbjct: 66 RKTIENVQVVDYSPAQEGKVFFGAWVE-IENDDGEKRSFKIVGYDEIFGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AR L+ KE+ D ++ P GE+ + I ++
Sbjct: 125 ARGLLKKEVDDEAVIHTPAGEQVWYINRI 153
>gi|291526253|emb|CBK91840.1| transcription elongation factor GreA [Eubacterium rectale DSM
17629]
gi|291526764|emb|CBK92350.1| transcription elongation factor GreA [Eubacterium rectale M104/1]
Length = 162
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 91/149 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ E+
Sbjct: 8 LTYAGLKKLEDELEQLKVVKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + D+I+ G + +++ ++ Y+IVG EA+ G +S SP+
Sbjct: 68 EKILKNAEVVVEEEVDLDKISIGCKIRILDCEFDEELEYKIVGSTEANSLKGKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GK++GD ++V GE TY++L++
Sbjct: 128 GKALLGKKVGDTVTVETQVGELTYKVLEI 156
>gi|317055778|ref|YP_004104245.1| transcription elongation factor GreA [Ruminococcus albus 7]
gi|315448047|gb|ADU21611.1| transcription elongation factor GreA [Ruminococcus albus 7]
Length = 158
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 88/149 (59%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
V+ G++K+ +E + +R + + + EAR++GDLSENAEY AK Q + E R+ EL
Sbjct: 7 VSKAGYNKLVEEKEYLVTVKRKEVAQKLKEARSFGDLSENAEYDEAKNEQAILESRINEL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I+ A V+D +S + G+ V L + + + QIVG E+D +G +S SPI
Sbjct: 67 EILISNATVVDDDEISVHEVGVGSYVKLKDLEFDEIETLQIVGSTESDPDNGKISDESPI 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A + ++GDI V AP G +E+L++
Sbjct: 127 GKAALHMKVGDIFEVEAPAGMIKFEVLEI 155
>gi|197286719|ref|YP_002152591.1| transcription elongation factor GreB [Proteus mirabilis HI4320]
gi|227355091|ref|ZP_03839502.1| transcription elongation factor [Proteus mirabilis ATCC 29906]
gi|194684206|emb|CAR45694.1| transcription elongation factor [Proteus mirabilis HI4320]
gi|227164878|gb|EEI49725.1| transcription elongation factor [Proteus mirabilis ATCC 29906]
Length = 159
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + +EL++ +EERPR+ +++SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITRDGWHALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V+L E + + K +++VG E D +SI SP+
Sbjct: 67 SKRLDELKIVDPDPRQEGKVYFGAWVTL-EDDDENIKTFRLVGPDEFDPAKQWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D +SV PGG Y +L +
Sbjct: 126 ARALIGKKVDDEVSVQTPGGIVNYCVLSI 154
>gi|313892199|ref|ZP_07825792.1| transcription elongation factor GreA [Dialister microaerophilus
UPII 345-E]
gi|313119337|gb|EFR42536.1| transcription elongation factor GreA [Dialister microaerophilus
UPII 345-E]
Length = 162
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 88/146 (60%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +K+Q+EL + ++R + + + EA + GDLSEN+EY AK Q+ EGR+ EL
Sbjct: 9 VTREGLEKMQRELDELRSKKRGEVAQRLKEAISMGDLSENSEYDDAKNEQSFVEGRILEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I R V+ G R+ +TV++ + + G ++ IVG E+D G +S SP
Sbjct: 69 ETKI-RTAVLISQKKKGGRVDLASTVTIQDMSDGSEETVTIVGSTESDPFEGKISNESPA 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
RAL+G +LGDI+ V+AP G Y+I
Sbjct: 128 GRALMGSKLGDIVEVDAPTGIIKYKI 153
>gi|165975847|ref|YP_001651440.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|307256431|ref|ZP_07538213.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|165875948|gb|ABY68996.1| transcription elongation factor [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|306865061|gb|EFM96962.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 162
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + R+ L
Sbjct: 7 ITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+
Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGE 147
ARALIGKE+ D I V+ P G+
Sbjct: 126 ARALIGKEVDDEIKVDTPLGK 146
>gi|238783101|ref|ZP_04627127.1| Transcription elongation factor greB [Yersinia bercovieri ATCC
43970]
gi|238715897|gb|EEQ07883.1| Transcription elongation factor greB [Yersinia bercovieri ATCC
43970]
Length = 165
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+D ++ FGA V VE + +++ +++VG E D +SI SP+
Sbjct: 67 TKRLEVLKVVDPDPRQEGKVFFGAWVR-VENEAEEQRIFRLVGPDEFDPAKKWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D ++V P GE TY IL++
Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILEI 154
>gi|238922488|ref|YP_002936001.1| transcription elongation factor GreA [Eubacterium rectale ATCC
33656]
gi|238874160|gb|ACR73867.1| transcription elongation factor GreA [Eubacterium rectale ATCC
33656]
Length = 185
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 91/149 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ E+
Sbjct: 31 LTYAGLKKLEDELEQLKVVKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 90
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + D+I+ G + +++ ++ Y+IVG EA+ G +S SP+
Sbjct: 91 EKILKNAEVVVEEEVDLDKISIGCKIRILDCEFDEELEYKIVGSTEANSLKGKISNESPV 150
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GK++GD ++V GE TY++L++
Sbjct: 151 GKALLGKKVGDTVTVETQVGELTYKVLEI 179
>gi|303249748|ref|ZP_07335952.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307251936|ref|ZP_07533837.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302651315|gb|EFL81467.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306860628|gb|EFM92640.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 162
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + R+ L
Sbjct: 7 ITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+
Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGE 147
ARALIGKE+ D I V+ P G+
Sbjct: 126 ARALIGKEVDDEIKVDTPLGK 146
>gi|284048763|ref|YP_003399102.1| GreA/GreB family elongation factor [Acidaminococcus fermentans DSM
20731]
gi|283952984|gb|ADB47787.1| GreA/GreB family elongation factor [Acidaminococcus fermentans DSM
20731]
Length = 172
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 96/157 (61%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T +G K++ EL + + E+R ++ + + A +YGD+SEN+EY AK Q E
Sbjct: 1 MAEQTILTEEGLKKLEDELDYLRSEKRQQVAERLKVAISYGDISENSEYDDAKNEQAFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD--VQSG 118
GR+ LEN+I A++I + ++ + ++ G V + + + D++ Y +VG EAD +
Sbjct: 61 GRILTLENMIRNAQIIKDTDITKNVVSLGCKVKIEDMETHDQEEYTVVGTTEADPMAEPP 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +A++G+++G ++ V P GE Y+I+ V
Sbjct: 121 RISNESPVGKAILGQKVGAVVKVTTPIGELDYKIVAV 157
>gi|16766791|ref|NP_462406.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167990706|ref|ZP_02571805.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168241643|ref|ZP_02666575.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194447454|ref|YP_002047527.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197264550|ref|ZP_03164624.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|25452998|sp|Q8ZLJ2|GREB_SALTY RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|16422062|gb|AAL22365.1| transcription elongation factor and transcript cleavage [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|194405758|gb|ACF65977.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197242805|gb|EDY25425.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|205330768|gb|EDZ17532.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205338738|gb|EDZ25502.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|261248658|emb|CBG26496.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267995723|gb|ACY90608.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301160046|emb|CBW19565.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312914527|dbj|BAJ38501.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321226553|gb|EFX51603.1| Transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323131862|gb|ADX19292.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332990355|gb|AEF09338.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 157
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + GD+ ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGDRLKFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE + +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPVGEANWYV 150
>gi|213163601|ref|ZP_03349311.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 109
Score = 98.6 bits (244), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 77/106 (72%), Gaps = 1/106 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVG 109
++E ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVG
Sbjct: 64 DIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVG 109
>gi|296122734|ref|YP_003630512.1| transcription elongation factor GreA [Planctomyces limnophilus DSM
3776]
gi|296015074|gb|ADG68313.1| transcription elongation factor GreA [Planctomyces limnophilus DSM
3776]
Length = 160
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 96/152 (63%), Gaps = 2/152 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P++ +G+DK+++E+R + ++ P+I +AI+EARA GDL ENAEY +E Q + R+
Sbjct: 5 PISREGYDKLKEEIRKLEHDDMPKIAEAIAEARAEGDLKENAEYHGQREEQGRLQARINS 64
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI--S 123
L++ + ++D ST+ +AFG V++ + GD + Y+ VG E D S ++ I +
Sbjct: 65 LKSKLASCYIVDKSTLPKGVVAFGTRVTVKNTDDGDIEKYEFVGPGEEDYMSDVMKILTT 124
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+A AL+GK++ D +S+ P G YEI ++
Sbjct: 125 SPLASALLGKKVNDKVSIQVPRGTINYEITEI 156
>gi|146313451|ref|YP_001178525.1| transcription elongation factor GreB [Enterobacter sp. 638]
gi|145320327|gb|ABP62474.1| transcription elongation factor GreB [Enterobacter sp. 638]
Length = 157
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + ++D S ++ FGA V +E + GD K ++IVG E + +SI
Sbjct: 62 VRYLTKCLEYLRIVDYSPQQEGKVFFGAWVE-IENDDGDTKRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ V P GE ++ + ++ ++
Sbjct: 121 DSPMARALLKKEVGDLAIVQTPSGEASWYVNEIEYV 156
>gi|307249608|ref|ZP_07531594.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306858306|gb|EFM90376.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 162
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + QEL++ ++ERP++ A+SEA A GD SENAEY K + R+ L
Sbjct: 7 ITRSGWQTLDQELKFLWKDERPKVTHAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+
Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGE 147
ARALIGKE+ D I V+ P G+
Sbjct: 126 ARALIGKEVDDEIKVDTPLGK 146
>gi|320539828|ref|ZP_08039487.1| transcription elongation factor [Serratia symbiotica str. Tucson]
gi|320030014|gb|EFW12034.1| transcription elongation factor [Serratia symbiotica str. Tucson]
Length = 157
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 90/149 (60%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITRQGYSKLKQELDYLWREERPEVTKKVACAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +VI+ + ++ FGA V VE ++GD K ++IVG E + +SI +P+
Sbjct: 66 AQCLEQLKVINYAPQQEGKVFFGAWVE-VENDNGDVKRFRIVGYDEIFGRKDYISIDAPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+ KE+GD VN P GE + I ++
Sbjct: 125 ARALLKKEVGDTAIVNTPQGEAWWHINKI 153
>gi|238788974|ref|ZP_04632764.1| Transcription elongation factor greB [Yersinia frederiksenii ATCC
33641]
gi|238723001|gb|EEQ14651.1| Transcription elongation factor greB [Yersinia frederiksenii ATCC
33641]
Length = 165
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWQALDHELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V VE + +++ +++VG E D +SI SP+
Sbjct: 67 TKRLEVLKIVDPDPRQEGKVYFGAWVR-VENEAAEQRIFRLVGPDEFDPAKKWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D ++V P GE TY IL +
Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILDI 154
>gi|24053876|gb|AAN44886.1| transcription elongation factor and transcript cleavage factor
[Shigella flexneri 2a str. 301]
gi|30043573|gb|AAP19293.1| transcription elongation factor and transcript cleavage factor
[Shigella flexneri 2a str. 2457T]
Length = 170
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 74 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE + +
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEANWYV 162
>gi|317131159|ref|YP_004090473.1| transcription elongation factor GreA [Ethanoligenens harbinense
YUAN-3]
gi|315469138|gb|ADU25742.1| transcription elongation factor GreA [Ethanoligenens harbinense
YUAN-3]
Length = 157
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 86/155 (55%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T G K++QEL + E+R I + I A ++GDLSEN+EY AK Q + E
Sbjct: 1 MAKQYVLTDAGLKKLEQELEQLKTEKRKEIAEKIKVALSFGDLSENSEYDEAKNEQAMVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A +E ++ ++ID + + + G+ V + + + YQIVG EAD L+
Sbjct: 61 SRIATIEAMLKNVKLIDDDQLDTEAVNLGSKVQVFDVEFDETVEYQIVGSTEADPDQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ RAL+G ++GD + P G +++L +
Sbjct: 121 SDESPVGRALLGHKVGDEVEAETPAGVLKFKVLNI 155
>gi|325860400|ref|ZP_08173512.1| transcription elongation factor GreA [Prevotella denticola CRIS
18C-A]
gi|327312605|ref|YP_004328042.1| transcription elongation factor GreA [Prevotella denticola F0289]
gi|325482058|gb|EGC85079.1| transcription elongation factor GreA [Prevotella denticola CRIS
18C-A]
gi|326944307|gb|AEA20192.1| transcription elongation factor GreA [Prevotella denticola F0289]
Length = 153
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 91/140 (65%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AE+
Sbjct: 1 MSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAEM 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +A+++D+S +S + + +TV + + + K Y IV + EA+++ +SI +PI
Sbjct: 61 KMTVAQAKIVDLSRLSTEAVQIMSTVEMTDVKTKAKMKYTIVSETEANLKQNKISIKTPI 120
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K++GD + + P G
Sbjct: 121 AQGLLNKKVGDEVEITIPRG 140
>gi|324538258|gb|ADY49528.1| Transcription elongation factor greA [Ascaris suum]
Length = 148
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 86/129 (66%), Gaps = 3/129 (2%)
Query: 20 RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIS 79
++ +RP +++ I EA+++GDLSEN+EY +A+E Q+ E ++ EL+ II+ A++I
Sbjct: 20 QYYVHTKRPEVVERIKEAKSFGDLSENSEYDSAREEQSFVEAKIKELDAIISNAQIIGAV 79
Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQSGLVSISSPIARALIGKELGD 137
T S D + G+TV+ + S +K+ Y I VG D ++ +S ++P+ARAL+G ++GD
Sbjct: 80 TNS-DTVVLGSTVTYEDTTSKEKQTYTILGVGANPLDQKNPSISTNTPVARALLGCKVGD 138
Query: 138 IISVNAPGG 146
I+++ AP G
Sbjct: 139 IVTIEAPMG 147
>gi|322830974|ref|YP_004211001.1| transcription elongation factor GreB [Rahnella sp. Y9602]
gi|321166175|gb|ADW71874.1| transcription elongation factor GreB [Rahnella sp. Y9602]
Length = 157
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK++ EL + ++ERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYDKLKTELDFLWRDERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRIRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + ++D S ++ FGA V VE + GD K ++IVG E + +SI SP+
Sbjct: 66 TKCMEQLRIVDYSPQQDGKVFFGAWVE-VENDDGDIKRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+ KE+GD + V P G+ T+ + ++
Sbjct: 125 ARALLKKEVGDSLVVTTPVGDATWYVNEI 153
>gi|152977979|ref|YP_001343608.1| transcription elongation factor GreB [Actinobacillus succinogenes
130Z]
gi|150839702|gb|ABR73673.1| transcription elongation factor GreB [Actinobacillus succinogenes
130Z]
Length = 158
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWNALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V L E G+ K Y+IVG E D +S+ SP+
Sbjct: 67 MKRLEVLQIVDYHSRQEGKVFFGAWVEL-ENEDGEAKQYRIVGCDEFDPAKNWISVDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK + D + V P G+ T I ++ +
Sbjct: 126 ARALIGKTVDDEVRVETPAGKVTLYINEIWY 156
>gi|284008800|emb|CBA75550.1| transcription elongation factor [Arsenophonus nasoniae]
Length = 160
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 94/149 (63%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K+++EL++ +EERP++ +A+SEA A GD SENAEY K+ + R+ L
Sbjct: 6 ITREGWNKLEKELKFLWREERPKVTQAVSEAAALGDRSENAEYIYGKKRLREIDRRIRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D R+ FGA V + ++N G K +++VG E + +SI+SP+
Sbjct: 66 SKRLEILKIVDPDPRQEGRVYFGAWVKVQDEN-GVIKVFRLVGADEFNPIKKWISINSPV 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AR L+GK++ D ++VN P G TY IL++
Sbjct: 125 ARELLGKQIDDEVTVNTPNGIITYWILEI 153
>gi|256544717|ref|ZP_05472089.1| transcription elongation factor GreA [Anaerococcus vaginalis ATCC
51170]
gi|256399606|gb|EEU13211.1| transcription elongation factor GreA [Anaerococcus vaginalis ATCC
51170]
Length = 157
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 87/142 (61%), Gaps = 1/142 (0%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
K+Q EL + + + RP I + I EAR++GDLSENA+Y AK Q E R+A++E++I A
Sbjct: 16 KLQDELEYLKTKRRPEIAEKIKEARSFGDLSENADYDEAKNEQGEVESRIAKVEDMIRHA 75
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+ + ST + D ++ G+ V + ++ + Y+IVG E++ G +S SP+ AL+GK
Sbjct: 76 KTFEDST-NKDEVSVGSKVLIHDEEFDEDLEYKIVGTAESNPLEGFISNESPVGEALLGK 134
Query: 134 ELGDIISVNAPGGEKTYEILQV 155
+ GD + V P G+ Y I ++
Sbjct: 135 KKGDKVEVVTPNGKCYYTIKEI 156
>gi|212711646|ref|ZP_03319774.1| hypothetical protein PROVALCAL_02721 [Providencia alcalifaciens DSM
30120]
gi|212685748|gb|EEB45276.1| hypothetical protein PROVALCAL_02721 [Providencia alcalifaciens DSM
30120]
Length = 161
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 91/149 (61%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D + +EL++ +EERP + +++SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWDALDKELKYLWKEERPLVTQSVSEAAAQGDRSENAEYIYGKKRLREIDRRIRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +++ R+ FGA V L E ++ + + ++IVG E D +SI SP+
Sbjct: 67 SKRLDQLRIVEPDPRQEGRVFFGAWVKL-EDDNENIRIFRIVGADEFDPAKQWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D + V PGG+ TY IL++
Sbjct: 126 ARALIGKQVEDEVVVTTPGGKITYFILEI 154
>gi|113461635|ref|YP_719704.1| transcription elongation factor GreB [Haemophilus somnus 129PT]
gi|112823678|gb|ABI25767.1| transcription elongation factor GreB [Haemophilus somnus 129PT]
Length = 158
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++ + QEL++ ++ERP+I +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRSGWNILDQELKYLWKDERPKITQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V+L E G++K Y+IVG E D +SI SP+
Sbjct: 67 MKRLEVLQIVDYNPKQEGKVFFGAWVAL-EDEQGEEKQYRIVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGKE+ D I V P G
Sbjct: 126 ARALIGKEVDDEIKVATPSG 145
>gi|293374263|ref|ZP_06620591.1| transcription elongation factor GreA [Turicibacter sanguinis PC909]
gi|325844834|ref|ZP_08168286.1| transcription elongation factor GreA [Turicibacter sp. HGF1]
gi|292647096|gb|EFF65078.1| transcription elongation factor GreA [Turicibacter sanguinis PC909]
gi|325489021|gb|EGC91409.1| transcription elongation factor GreA [Turicibacter sp. HGF1]
Length = 156
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K Q EL QQ I + EARA GDLSENAEY AA+E Q + R+ EL
Sbjct: 8 LTLEGIKKFQDELDHLQQVRMEEIKVKLQEARAQGDLSENAEYDAAREEQAMVYERIQEL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I+ A VI+ S + + I G+TVS E+ + ++ Y+IVG EA+ +S SPI
Sbjct: 68 QYILKNAVVIE-SDENSEVITIGSTVSYQEEETDEQMTYKIVGSAEANPFEAKISNESPI 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+AL+GK +GD+ V+ P G T IL V
Sbjct: 127 AQALMGKRVGDVAMVSTPKGIVTVVILDV 155
>gi|157373311|ref|YP_001471911.1| transcription elongation factor GreB [Shewanella sediminis HAW-EB3]
gi|157315685|gb|ABV34783.1| transcription elongation factor GreB [Shewanella sediminis HAW-EB3]
Length = 163
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG+ + +EL++ +E RP I K + EA A GD SENA+Y K L + R+ L
Sbjct: 6 ITRKGWQALDKELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA + L E +G+ Y+IVG E D + G ++I SP+
Sbjct: 66 VKRVEELQIVDYSPQQEGKVFFGAWIEL-ENEAGEIVQYRIVGKDELDTKLGYITIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARALIGK++ D + V P G K + I
Sbjct: 125 ARALIGKQVDDEVVVPTPLGPKEWYI 150
>gi|260593365|ref|ZP_05858823.1| transcription elongation factor GreA [Prevotella veroralis F0319]
gi|260534641|gb|EEX17258.1| transcription elongation factor GreA [Prevotella veroralis F0319]
Length = 156
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 90/140 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AE+
Sbjct: 4 MSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAEM 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +A+++D+S +S + + +TV + + K Y IV + EA+++ +SI +PI
Sbjct: 64 KMTVAQAKIVDVSRLSTEAVQIMSTVEMTNVKTKAKMKYTIVSETEANLKQNKISIKTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K++GD + + P G
Sbjct: 124 AQGLLNKKVGDEVEITIPRG 143
>gi|170718655|ref|YP_001783851.1| transcription elongation factor GreB [Haemophilus somnus 2336]
gi|168826784|gb|ACA32155.1| transcription elongation factor GreB [Haemophilus somnus 2336]
Length = 158
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 84/140 (60%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++ + QEL++ ++ERP+I +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRSGWNILDQELKYLWKDERPKITQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V+L E G++K Y+IVG E D +SI SP+
Sbjct: 67 MKRLEVLQIVDYNPKQEGKVFFGAWVAL-EDEQGEEKQYRIVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGKE+ D I V P G
Sbjct: 126 ARALIGKEVDDEIKVATPSG 145
>gi|270264441|ref|ZP_06192707.1| transcription elongation factor GreB [Serratia odorifera 4Rx13]
gi|270041577|gb|EFA14675.1| transcription elongation factor GreB [Serratia odorifera 4Rx13]
Length = 157
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 92/152 (60%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYDNLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +++D S ++ FGA V VE +G+ K ++IVG E + +SI SP+
Sbjct: 66 TKCLEQLKIVDYSPQQEGKVFFGAWVE-VENENGECKRFRIVGYDEIFGRRDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD +VN P G+ + + ++ ++
Sbjct: 125 ARALLKKEVGDAATVNTPVGDALWYVNEIEYV 156
>gi|281421109|ref|ZP_06252108.1| transcription elongation factor GreA [Prevotella copri DSM 18205]
gi|281404644|gb|EFB35324.1| transcription elongation factor GreA [Prevotella copri DSM 18205]
Length = 155
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/140 (37%), Positives = 84/140 (60%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ EL+ ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ L
Sbjct: 4 MSQEGYDKLVAELKQLVSVERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINRL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A++ID +S D + + V + + K Y IV + EA+++ G +SI +PI
Sbjct: 64 KLTIAEAKIIDTKQLSTDSVQIMSKVEMTNMANKAKMTYTIVSESEANLKEGKISIKTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K++G++ + P G
Sbjct: 124 AQGLLNKKVGEVAEIKIPRG 143
>gi|167854513|ref|ZP_02477294.1| transcription elongation factor GreB [Haemophilus parasuis 29755]
gi|167854268|gb|EDS25501.1| transcription elongation factor GreB [Haemophilus parasuis 29755]
Length = 162
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + QEL++ +EERP++ +A+SEA A GD SENAEY K + R+ L
Sbjct: 7 ITRSGWQALDQELKYLWKEERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+
Sbjct: 67 SKRLEVLQIVDYHPSQEGKVFFGAWVEL-ENEEGEIKQYRIVGCDEFDPAKQWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGE 147
ARALIGK++ D I V P G+
Sbjct: 126 ARALIGKQIDDEIQVETPAGK 146
>gi|282859825|ref|ZP_06268919.1| putative transcription elongation factor GreA [Prevotella bivia
JCVIHMP010]
gi|282587445|gb|EFB92656.1| putative transcription elongation factor GreA [Prevotella bivia
JCVIHMP010]
Length = 156
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 89/140 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ ++L+ + ERP+ AI+EA GDLSEN+EY AAKE Q E ++ E+
Sbjct: 4 MSQEGYDKLVEDLKQLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEAKILEM 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + A+++D S +S D + +TV + ++ K Y IV + EA+++ G +SI +PI
Sbjct: 64 KMTLAEAKIVDTSRLSTDAVQIMSTVEMTNVDNQTKMKYTIVSETEANIKQGKISIKTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K++GD+ + P G
Sbjct: 124 AQGLLNKKVGDVAEITIPRG 143
>gi|319938683|ref|ZP_08013047.1| transcription elongation factor greA [Streptococcus anginosus
1_2_62CV]
gi|319811733|gb|EFW07999.1| transcription elongation factor greA [Streptococcus anginosus
1_2_62CV]
Length = 160
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE++D ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVDSDAVAQDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E D++ Y IVG AD +G VS SPI +ALIGK+ GD +V P G
Sbjct: 88 AIGKTVTIQEVGETDEEVYMIVGAAGADAFAGKVSNESPIGQALIGKKTGDTATVETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|310765656|gb|ADP10606.1| Transcription elongation factor greB [Erwinia sp. Ejp617]
Length = 187
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 34 ITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDSRVRYL 93
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + ++D S ++ FGA V VE + GD K ++IVG E ++ +SI SP+
Sbjct: 94 TKCLEQLRIVDYSPQQDGKVFFGAWVE-VENDDGDIKRFRIVGYDEIFGRNDYISIDSPM 152
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE+GD +V P GE + +
Sbjct: 153 ARALLKKEVGDAATVFTPAGEALWYV 178
>gi|293390854|ref|ZP_06635188.1| transcription elongation factor GreB [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951388|gb|EFE01507.1| transcription elongation factor GreB [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 160
Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ + +EL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWNMLDRELKFLWKEERPQVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V L E G+ K Y+IVG E D + +SI SP+
Sbjct: 67 TKRLEVLQIVDYSPKQEGKVFFGAWVEL-ENEDGEVKQYRIVGCDEFDPANNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK+ D I+V+ P G K + + +W
Sbjct: 126 ARALIGKQEDDEITVDTPAG-KIWLCVNRIW 155
>gi|303252629|ref|ZP_07338792.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307247388|ref|ZP_07529435.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307260861|ref|ZP_07542547.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|302648597|gb|EFL78790.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|306856085|gb|EFM88241.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306869428|gb|EFN01219.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 162
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + R+ L
Sbjct: 7 ITRGGWQALDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+
Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGE 147
ARALIGKE+ D I V+ P G+
Sbjct: 126 ARALIGKEVDDEIKVDTPLGK 146
>gi|289422572|ref|ZP_06424415.1| transcription elongation factor GreA [Peptostreptococcus anaerobius
653-L]
gi|289157144|gb|EFD05766.1| transcription elongation factor GreA [Peptostreptococcus anaerobius
653-L]
Length = 161
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 92/143 (64%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+I +T +GFDK+++EL + R + + + A ++GDLSENAEY AK+ Q E R+
Sbjct: 8 EIILTQEGFDKLEEELELLKTTRRKEVAERLKVAISFGDLSENAEYDEAKKEQAALEERI 67
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LEN++ +A +ID S++ D I G+ V + +++ ++ Y IVG EAD +G +S
Sbjct: 68 IKLENMVRKAVIIDESSVDLDVITIGSIVRIYDEDFDEEVEYSIVGSAEADPYNGKISNE 127
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ ++L+G ++GD++ VN P G
Sbjct: 128 SPVGKSLLGSKIGDVVEVNVPDG 150
>gi|298373336|ref|ZP_06983325.1| transcription elongation factor GreA [Bacteroidetes oral taxon 274
str. F0058]
gi|298274388|gb|EFI15940.1| transcription elongation factor GreA [Bacteroidetes oral taxon 274
str. F0058]
Length = 156
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 93/153 (60%), Gaps = 4/153 (2%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T G+ K+ E+ + +R I I+EAR GDLSENAEY AAKE Q + E ++A
Sbjct: 4 VYMTEDGYKKLADEIAQMEAVDRKAISAQIAEARDKGDLSENAEYDAAKEAQGMLEMKIA 63
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSGLVSI 122
+++ + A +ID S + D + TV + KN +K+ Y +V + EA+++ G ++I
Sbjct: 64 QMKETLANARIIDESKLKTDSVQILNTVRV--KNLANKQEMTYTLVSENEANIREGKLAI 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
++PI + L+GK++G++ +N P G +E++ +
Sbjct: 122 NTPIGKGLLGKKIGEVAEINVPAGLMRFEVVSI 154
>gi|283480153|emb|CAY76069.1| Transcription elongation factor greB [Erwinia pyrifoliae DSM 12163]
Length = 187
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 34 ITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 93
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + ++D S ++ FGA V VE + GD K ++IVG E ++ +SI SP+
Sbjct: 94 TKCLEQLRIVDYSPQQDGKVFFGAWVE-VENDDGDIKRFRIVGYDEIFGRNDYISIDSPM 152
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE+GD +V P GE + I
Sbjct: 153 ARALLKKEVGDAATVFTPAGEALWYI 178
>gi|226309768|ref|YP_002769662.1| transcription elongation factor [Brevibacillus brevis NBRC 100599]
gi|226092716|dbj|BAH41158.1| transcription elongation factor [Brevibacillus brevis NBRC 100599]
Length = 158
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++QEL + +R + I EA ++GD+SEN+EY+ AK Q EGR+ L
Sbjct: 8 LTPEGLTKLEQELEDLKTVKRKEVAARIKEAISFGDISENSEYEEAKNEQAFIEGRILTL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A +I + ++ G+ V L + GD +Y IVG E+D + +S SP+
Sbjct: 68 EKMLRNARIITNEDVDTGVVSVGSRVKLKDLEFGDVMDYTIVGSAESDPMNNKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GK G I+ VN P G YEIL +
Sbjct: 128 GQALLGKAKGAIVDVNVPAGVIQYEILDI 156
>gi|169836893|ref|ZP_02870081.1| transcription elongation factor GreA [candidate division TM7
single-cell isolate TM7a]
Length = 151
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 93/150 (62%), Gaps = 7/150 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++++ EL + R I + I+EAR YGDLSENAEY AA+E Q + E R+AE+
Sbjct: 7 ITEAGKNELKDELETLKGR-RGEIAEKIAEARDYGDLSENAEYDAAREEQGIVETRIAEI 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN-YQIVGDQEADVQSGLVSISSP 125
ENI+ A +I +SG ++ G+ V L+ +G K Y +VG EAD G VS SP
Sbjct: 66 ENILQNAAII-TGGVSG-QVGLGSVVELM---TGSKTAVYTVVGPVEADPLEGKVSNESP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
I AL+GK++ DI+ +N P G+ Y+I+ +
Sbjct: 121 IGAALMGKKVDDIVEINTPKGKLEYKIISI 150
>gi|56415418|ref|YP_152493.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197364348|ref|YP_002143985.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56129675|gb|AAV79181.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197095825|emb|CAR61398.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 157
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 87/150 (58%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++ ++QEL + EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYETLKQELNYLWHEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + GD ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGDTLKFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE + +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPVGEANWYV 150
>gi|301167994|emb|CBW27580.1| transcription elongation factor [Bacteriovorax marinus SJ]
Length = 154
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/149 (39%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K FD++ E+ + ERP+ + I+ A GD SENA+Y K+ + R+ L
Sbjct: 1 MTPKCFDELSAEMENLLKVERPKTTQIIAWAAGNGDRSENADYIYGKKRLREIDRRLRFL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +EVID MS +++ F ATV+ VE + K Y IVG E +V G +S SPI
Sbjct: 61 KKRLDDSEVIDPLKMSSEKVQFSATVT-VEDEEAEVKVYSIVGIDEVEVSKGKISWRSPI 119
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
RAL+GKE+ DI+S++AP G EIL++
Sbjct: 120 GRALLGKEVEDIVSIDAPNGSFELEILKI 148
>gi|239637583|ref|ZP_04678555.1| transcription elongation factor GreA [Staphylococcus warneri
L37603]
gi|239596801|gb|EEQ79326.1| transcription elongation factor GreA [Staphylococcus warneri
L37603]
gi|330685471|gb|EGG97125.1| transcription elongation factor GreA [Staphylococcus epidermidis
VCU121]
Length = 158
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +GF+K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 8 PMTQEGFEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E++I A +I+ T + + G TV+ VE ++++YQIVG EAD G +S SP
Sbjct: 68 IEHMIRNALIIE-DTGDNNTVQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISNESP 126
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155
+A ALIGK L D + V P GGE +I+ +
Sbjct: 127 MASALIGKSLDDEVRVPLPNGGEMNVKIVDI 157
>gi|260910637|ref|ZP_05917297.1| transcription elongation factor GreA [Prevotella sp. oral taxon 472
str. F0295]
gi|260635237|gb|EEX53267.1| transcription elongation factor GreA [Prevotella sp. oral taxon 472
str. F0295]
Length = 154
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 88/140 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G++K+ ELR + ERP+ AI++AR GDLSEN+EY AAKE Q E ++ +L
Sbjct: 4 MSQEGYEKLVAELRRLESIERPKASAAIADARDKGDLSENSEYDAAKEAQAHLEDKINKL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A+++D S +S D + + V + + K +Y IV + EA+++ G ++I++PI
Sbjct: 64 KVAINEAKIVDTSRLSTDAVQILSKVDMTNLTTKAKMSYTIVSESEANLKEGKIAITTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K+ GD + + P G
Sbjct: 124 AQGLLNKKEGDEVEITIPRG 143
>gi|152997778|ref|YP_001342613.1| transcription elongation factor GreB [Marinomonas sp. MWYL1]
gi|150838702|gb|ABR72678.1| transcription elongation factor GreB [Marinomonas sp. MWYL1]
Length = 196
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 88/147 (59%), Gaps = 3/147 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T +G + EL++ +E+RP + + + EA A GD SENAEY K+L+ ++ R+
Sbjct: 42 ITQEGAQALLAELKYLWKEKRPAVTETVREAAAQGDRSENAEYIYGKKQLREIDR-RVRY 100
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + V+D +R+ FGA V+L E +G+ K Y+IVG E D S +SI SP
Sbjct: 101 LEKRLEVCTVVDRFPSDQERVFFGAWVTL-EDEAGNLKEYRIVGPDELDHHSSYISIDSP 159
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+ K+ GD + + GGEKTY I
Sbjct: 160 VARALLKKQEGDEVVIRLAGGEKTYII 186
>gi|325678470|ref|ZP_08158086.1| transcription elongation factor GreA [Ruminococcus albus 8]
gi|324109838|gb|EGC04038.1| transcription elongation factor GreA [Ruminococcus albus 8]
Length = 158
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 87/149 (58%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
V+ G+ K+ +E + +R + + + EAR++GDLSENAEY AK Q + E R+ EL
Sbjct: 7 VSKAGYAKLVEEKEYLVTVKRKEVAQKLKEARSFGDLSENAEYDEAKNEQAILESRINEL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I+ A V+D +S I G+ V L + + + QIVG E+D +G +S SPI
Sbjct: 67 EILISNATVVDDDEVSVHEIGVGSYVKLKDLELDEVETLQIVGSTESDPDNGKISDESPI 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A + ++GDI V AP G +E+L++
Sbjct: 127 GKAAMHMKVGDIFEVEAPAGMIKFEVLEI 155
>gi|306824895|ref|ZP_07458239.1| transcription elongation factor GreA [Streptococcus sp. oral taxon
071 str. 73H25AP]
gi|304433106|gb|EFM36078.1| transcription elongation factor GreA [Streptococcus sp. oral taxon
071 str. 73H25AP]
Length = 160
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 85/129 (65%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E +++ Y IVG AD +G VS SPI +ALIGK+ GDI+++ P G
Sbjct: 88 AIGKTVTIQEIGEEEEEVYIIVGSAGADAFAGKVSNESPIGQALIGKKTGDIVTIETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|224476708|ref|YP_002634314.1| transcription elongation factor GreA [Staphylococcus carnosus
subsp. carnosus TM300]
gi|254799567|sp|B9DNJ3|GREA_STACT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|222421315|emb|CAL28129.1| putative transcription elongation factor,similar to GreA
[Staphylococcus carnosus subsp. carnosus TM300]
Length = 160
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 92/143 (64%), Gaps = 5/143 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +GF+K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 8 PMTQEGFEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67
Query: 66 LENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+E++I A +I+ SGD + G TV+ +E G+++ YQIVG EAD +G +S
Sbjct: 68 IEHMIRNALIIE---DSGDNNVVQIGKTVTFIEIPDGEEEVYQIVGSAEADAFNGKISNE 124
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SPIA++LIGK L D + V P G
Sbjct: 125 SPIAKSLIGKHLDDEVRVPLPNG 147
>gi|332289717|ref|YP_004420569.1| transcription elongation factor GreB [Gallibacterium anatis UMN179]
gi|330432613|gb|AEC17672.1| transcription elongation factor GreB [Gallibacterium anatis UMN179]
Length = 161
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++ + QEL++ + ERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRAGWNTLDQELKYLWKVERPQVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D +I FGA V L E +GD K Y+IVG E D +SI SP+
Sbjct: 67 TKRLEVLQIVDYHPRQEGKIFFGAWVEL-ETENGDLKQYRIVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK + D + V+ P G+ + + ++ +
Sbjct: 126 ARALIGKSIDDEVKVDTPSGKIVFYVNKIWY 156
>gi|258647783|ref|ZP_05735252.1| transcription elongation factor GreA [Prevotella tannerae ATCC
51259]
gi|260852234|gb|EEX72103.1| transcription elongation factor GreA [Prevotella tannerae ATCC
51259]
Length = 177
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 88/140 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK+ L + ERP AI+EAR GDLSEN+EY AAKE Q + E ++++L
Sbjct: 27 MTQEGYDKMVARLHHMEAVERPAASAAIAEARDKGDLSENSEYDAAKEAQGMLEMKISQL 86
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A++ID S ++ + + +TV++ +G Y IV + EA+++ G +S +PI
Sbjct: 87 KEAIATAKIIDTSKLNNETVQILSTVAMKNLKTGMVMTYTIVSESEANIREGKISSQTPI 146
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+G ++GD++ V P G
Sbjct: 147 AQGLLGHKVGDVVEVKIPQG 166
>gi|259910054|ref|YP_002650410.1| transcription elongation factor GreB [Erwinia pyrifoliae Ep1/96]
gi|224965676|emb|CAX57208.1| Transcription elongation factor [Erwinia pyrifoliae Ep1/96]
Length = 159
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + ++D S ++ FGA V VE + GD K ++IVG E ++ +SI SP+
Sbjct: 66 TKCLEQLRIVDYSPQQDGKVFFGAWVE-VENDDGDIKRFRIVGYDEIFGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE+GD +V P GE + I
Sbjct: 125 ARALLKKEVGDAATVFTPAGEALWYI 150
>gi|193216587|ref|YP_001999829.1| transcription elongation factor [Mycoplasma arthritidis 158L3-1]
gi|259647648|sp|B3PM73|GREA_MYCA5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|193001910|gb|ACF07125.1| transcription elongation factor [Mycoplasma arthritidis 158L3-1]
Length = 159
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 92/146 (63%), Gaps = 5/146 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI +T+ F + Q+ L++ Q+ RP++I+ I EAR GDLSENAEY AA++ Q E
Sbjct: 6 EKIYLTADSFKQYQERLQYLQEVLRPQVIEEIKEARNQGDLSENAEYDAARDKQATIENE 65
Query: 63 MAELENIITRAEVIDIST---MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ E+++I+ E+I T +S RI G+ VS+V N+QIVG + D +G
Sbjct: 66 ITEIQHILDNYEIIKTQTNRQVSVVRI--GSNVSVVSLKDDTVINFQIVGALDTDPFNGK 123
Query: 120 VSISSPIARALIGKELGDIISVNAPG 145
+S +SP+A+A+IG++ G+++ V AP
Sbjct: 124 ISNTSPLAKAVIGRKAGEVVEVEAPN 149
>gi|24376104|ref|NP_720147.1| transcription elongation factor GreB [Shewanella oneidensis MR-1]
gi|24351133|gb|AAN57591.1|AE015894_11 transcription elongation factor GreB [Shewanella oneidensis MR-1]
Length = 167
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L + R+ L
Sbjct: 6 ITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S +I FGA L E ++G++ Y+IVG E D + G ++I SP+
Sbjct: 66 VKRLEELKIVDYSPQQEGKIYFGAWFEL-ENDAGERVRYRIVGKDELDTKLGYITIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D + V P G K + I ++
Sbjct: 125 ARALIGKQVDDEVVVQTPSGPKAWYINEI 153
>gi|32034733|ref|ZP_00134864.1| COG0782: Transcription elongation factor [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126207870|ref|YP_001053095.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae L20]
gi|126096662|gb|ABN73490.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
Length = 162
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + R+ L
Sbjct: 7 ITRSGWQALDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V L E G+ K Y+IVG E D +S+ SP+
Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISLDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGE 147
ARALIGKE+ D I V+ P G+
Sbjct: 126 ARALIGKEVDDEIKVDTPLGK 146
>gi|172058075|ref|YP_001814535.1| transcription elongation factor GreA [Exiguobacterium sibiricum
255-15]
gi|171990596|gb|ACB61518.1| transcription elongation factor GreA [Exiguobacterium sibiricum
255-15]
Length = 157
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G ++ EL + R +++ I AR++GDLSENAEY +AKE Q + EGR+A+L
Sbjct: 8 MTLEGKANVENELNELKSVRRKEVVENIKIARSFGDLSENAEYDSAKEEQAMVEGRIAQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ +I + G TV+ + +++ Y IVG EAD +G +S SPI
Sbjct: 68 EEMLRNVAIISEDEKDISVVGIGTTVTFLILEDNEEETYTIVGSAEADPFTGKISNESPI 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A++L G +G+ +SV APGG+ +I +
Sbjct: 128 AKSLFGHSVGEQVSVQAPGGDFAVKITSI 156
>gi|307254163|ref|ZP_07536008.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307258626|ref|ZP_07540361.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306862863|gb|EFM94812.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306867283|gb|EFM99136.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 162
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + R+ L
Sbjct: 7 ITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+
Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGE 147
ARALIGKE D I V+ P G+
Sbjct: 126 ARALIGKEADDEIKVDTPLGK 146
>gi|190149679|ref|YP_001968204.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|307245216|ref|ZP_07527307.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307262987|ref|ZP_07544609.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189914810|gb|ACE61062.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306853860|gb|EFM86074.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306871613|gb|EFN03335.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 162
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + R+ L
Sbjct: 7 ITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+
Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGE 147
ARALIGKE D I V+ P G+
Sbjct: 126 ARALIGKEADDEIKVDTPLGK 146
>gi|42560844|ref|NP_975295.1| transcription elongation factor GreA [Mycoplasma mycoides subsp.
mycoides SC str. PG1]
gi|81400735|sp|Q6MTU9|GREA_MYCMS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|42492340|emb|CAE76937.1| transcription elongation factor [Mycoplasma mycoides subsp.
mycoides SC str. PG1]
gi|301321466|gb|ADK70109.1| putative transcription elongation factor GreA [Mycoplasma mycoides
subsp. mycoides SC str. Gladysdale]
Length = 157
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/142 (40%), Positives = 87/142 (61%), Gaps = 1/142 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E
Sbjct: 1 MSKEIILTQEGLEELKAELKHLLKVVRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60
Query: 61 GRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ E+E +I RA+VID S T S + G+TV V K +IVG EAD S L
Sbjct: 61 ARIKEVETLINRAKVIDDSKTHSTGEVKIGSTVQFVSSLDNKLKEIKIVGAIEADPFSNL 120
Query: 120 VSISSPIARALIGKELGDIISV 141
+S SPIA+A+IGK++ + +
Sbjct: 121 ISNESPIAKAIIGKKVNTTVEI 142
>gi|153853505|ref|ZP_01994885.1| hypothetical protein DORLON_00874 [Dorea longicatena DSM 13814]
gi|149753660|gb|EDM63591.1| hypothetical protein DORLON_00874 [Dorea longicatena DSM 13814]
Length = 160
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 87/149 (58%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL + +R I + I EAR GDLSENAEY AAK+ Q E R+ EL
Sbjct: 8 LTYAGLKALEDELENLKVVKRREIAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + D+I G TV + + ++ +++VG EA+ G +S SP+
Sbjct: 68 EAILKNAEVVVEDEVDFDKINIGCTVKVFDITFDEEMEFKLVGSTEANSLEGKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GK++GD+++V G Y++L +
Sbjct: 128 GQALMGKQIGDVVTVETQAGVMEYKVLDI 156
>gi|312968284|ref|ZP_07782494.1| transcription elongation factor GreB [Escherichia coli 2362-75]
gi|312287109|gb|EFR15019.1| transcription elongation factor GreB [Escherichia coli 2362-75]
Length = 158
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K + A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVIWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150
>gi|139438508|ref|ZP_01772024.1| Hypothetical protein COLAER_01017 [Collinsella aerofaciens ATCC
25986]
gi|133776047|gb|EBA39867.1| Hypothetical protein COLAER_01017 [Collinsella aerofaciens ATCC
25986]
Length = 156
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 94/154 (61%), Gaps = 6/154 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+I +T++G K+ +EL WR+ + I++ I EARA+GDLSEN+EY AAK+ Q N R+
Sbjct: 5 QIVLTAEGRQKLVEELAWREGDYAKEIVEDIKEARAFGDLSENSEYDAAKDKQAQNAARI 64
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
AE++ I+ A+V + +GD ++ G+TVSL++ N G+ +VG E + +S
Sbjct: 65 AEIQAILANAQV---AATTGDLTVSIGSTVSLIDPN-GEVMEVTLVGTTETNSLEHKISN 120
Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155
SP+ A+IG GD + V P G+ + Y I ++
Sbjct: 121 ESPVGHAIIGHGEGDSVEVVTPSGKTRVYTIAKI 154
>gi|16762784|ref|NP_458401.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29144271|ref|NP_807613.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|62182005|ref|YP_218422.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161616543|ref|YP_001590508.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167549293|ref|ZP_02343052.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|168232640|ref|ZP_02657698.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168235096|ref|ZP_02660154.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168260773|ref|ZP_02682746.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168465229|ref|ZP_02699121.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168818685|ref|ZP_02830685.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194443767|ref|YP_002042754.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194471051|ref|ZP_03077035.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194738363|ref|YP_002116445.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197249725|ref|YP_002148426.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|198242185|ref|YP_002217462.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200387248|ref|ZP_03213860.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204928487|ref|ZP_03219686.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|207858743|ref|YP_002245394.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213417934|ref|ZP_03351023.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213426886|ref|ZP_03359636.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213582289|ref|ZP_03364115.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213610173|ref|ZP_03369999.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213647809|ref|ZP_03377862.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213852069|ref|ZP_03381601.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|224585297|ref|YP_002639096.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238910491|ref|ZP_04654328.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289807151|ref|ZP_06537780.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
gi|289824835|ref|ZP_06544278.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25452995|sp|Q8Z217|GREB_SALTI RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|25321439|pir||AC0998 transcription elongation factor GreB greB [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505090|emb|CAD08111.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29139908|gb|AAO71473.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|62129638|gb|AAX67341.1| transcription elongation factor and transcript cleavage [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161365907|gb|ABX69675.1| hypothetical protein SPAB_04359 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402430|gb|ACF62652.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194457415|gb|EDX46254.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194713865|gb|ACF93086.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195632511|gb|EDX50995.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197213428|gb|ACH50825.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197291264|gb|EDY30616.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197936701|gb|ACH74034.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199604346|gb|EDZ02891.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204321920|gb|EDZ07118.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205325500|gb|EDZ13339.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205333162|gb|EDZ19926.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205344627|gb|EDZ31391.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205350295|gb|EDZ36926.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206710546|emb|CAR34904.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224469825|gb|ACN47655.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|320087918|emb|CBY97680.1| Transcription elongation factor greA Transcript cleavage factor
greA [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|322614123|gb|EFY11059.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618015|gb|EFY14908.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625371|gb|EFY22197.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629836|gb|EFY26609.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632275|gb|EFY29026.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636374|gb|EFY33081.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322643230|gb|EFY39799.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644768|gb|EFY41304.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322651207|gb|EFY47591.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322654925|gb|EFY51240.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322659182|gb|EFY55434.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663117|gb|EFY59321.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668603|gb|EFY64756.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674593|gb|EFY70686.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322678201|gb|EFY74262.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682542|gb|EFY78563.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322684255|gb|EFY80261.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322716493|gb|EFZ08064.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323192190|gb|EFZ77422.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323196384|gb|EFZ81536.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323201815|gb|EFZ86878.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323206357|gb|EFZ91318.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211950|gb|EFZ96777.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323216856|gb|EGA01579.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323222255|gb|EGA06638.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323224269|gb|EGA08558.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323228198|gb|EGA12329.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233535|gb|EGA17628.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323237003|gb|EGA21070.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243782|gb|EGA27798.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323245976|gb|EGA29963.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323250752|gb|EGA34630.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255763|gb|EGA39513.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323261379|gb|EGA44965.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267648|gb|EGA51130.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323268529|gb|EGA51996.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326625243|gb|EGE31588.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 157
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + GD ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGDTLKFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE + +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPVGEANWYV 150
>gi|320162389|ref|YP_004175614.1| transcription elongation factor GreA [Anaerolinea thermophila
UNI-1]
gi|319996243|dbj|BAJ65014.1| transcription elongation factor GreA [Anaerolinea thermophila
UNI-1]
Length = 155
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 93/149 (62%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ K+Q+EL + + ++R I + + EA G+L ENAEY+AAK Q EGR+ EL
Sbjct: 7 LTREGYAKLQEELEYLRTKKREEIAQRLHEAMEGGELIENAEYEAAKNEQAFVEGRIKEL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A++I+ G+ + G+ V++ E+ + + + Y IVG EA+ G +S SP+
Sbjct: 67 EYLLASAKIIEEGGTHGNVVQVGSRVTIQEEGA-EPEVYTIVGAAEANPVLGRISNESPL 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ALIGK+ GD + V+AP G IL+V
Sbjct: 126 GKALIGKKAGDNVQVDAPQGSFRVTILKV 154
>gi|307243775|ref|ZP_07525909.1| transcription elongation factor GreA [Peptostreptococcus stomatis
DSM 17678]
gi|306492851|gb|EFM64870.1| transcription elongation factor GreA [Peptostreptococcus stomatis
DSM 17678]
Length = 161
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 86/143 (60%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+I +T +G+DK++ EL + R + + + A ++GDLSENAEY AK+ Q E R+
Sbjct: 8 EIILTQEGYDKLESELELLKTTRRKEVAERLKVAISFGDLSENAEYDEAKKEQAALEERI 67
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LEN+ A +ID S ++ D I G+ V + +++ ++ Y IVG EAD G +S
Sbjct: 68 LKLENMTRVAVIIDESNVNLDIITVGSVVKIYDEDFDEELEYTIVGSAEADPYDGKISNE 127
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ +AL+G+ GD++ V P G
Sbjct: 128 SPVGKALLGRAKGDVVEVTVPDG 150
>gi|74313909|ref|YP_312328.1| transcription elongation factor GreB [Shigella sonnei Ss046]
gi|73857386|gb|AAZ90093.1| Transcription elongation factor [Shigella sonnei Ss046]
gi|323164968|gb|EFZ50759.1| transcription elongation factor GreB [Shigella sonnei 53G]
Length = 158
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + ++++ S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVNYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYV 150
>gi|238797302|ref|ZP_04640803.1| Transcription elongation factor greB [Yersinia mollaretii ATCC
43969]
gi|238718939|gb|EEQ10754.1| Transcription elongation factor greB [Yersinia mollaretii ATCC
43969]
Length = 169
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL + +EERP + A+SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWQALDRELHYLWREERPVVTLAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+D ++ FGA V VE + +++ +++VG E D +SI SP+
Sbjct: 67 TKRLEVLKVVDPDPRQEGKVFFGAWVR-VENEAEEQRIFRLVGPDEFDPAKKWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D ++V P GE TY IL++
Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILEI 154
>gi|22127785|ref|NP_671208.1| transcription elongation factor GreB [Yersinia pestis KIM 10]
gi|45439998|ref|NP_991537.1| transcription elongation factor GreB [Yersinia pestis biovar
Microtus str. 91001]
gi|51598055|ref|YP_072246.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
IP 32953]
gi|108809325|ref|YP_653241.1| transcription elongation factor GreB [Yersinia pestis Antiqua]
gi|108814090|ref|YP_649857.1| transcription elongation factor GreB [Yersinia pestis Nepal516]
gi|145597385|ref|YP_001161460.1| transcription elongation factor GreB [Yersinia pestis Pestoides F]
gi|150260817|ref|ZP_01917545.1| transcription elongation factor [Yersinia pestis CA88-4125]
gi|165928050|ref|ZP_02223882.1| transcription elongation factor GreB [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936194|ref|ZP_02224763.1| transcription elongation factor GreB [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010458|ref|ZP_02231356.1| transcription elongation factor GreB [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213294|ref|ZP_02239329.1| transcription elongation factor GreB [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399683|ref|ZP_02305207.1| transcription elongation factor GreB [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167418839|ref|ZP_02310592.1| transcription elongation factor GreB [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425709|ref|ZP_02317462.1| transcription elongation factor GreB [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468694|ref|ZP_02333398.1| transcription elongation factor GreB [Yersinia pestis FV-1]
gi|170022432|ref|YP_001718937.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
YPIII]
gi|186897255|ref|YP_001874367.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
PB1/+]
gi|218927346|ref|YP_002345221.1| transcription elongation factor GreB [Yersinia pestis CO92]
gi|229836384|ref|ZP_04456551.1| transcription elongation factor [Yersinia pestis Pestoides A]
gi|229839991|ref|ZP_04460150.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229842072|ref|ZP_04462227.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. India 195]
gi|229904627|ref|ZP_04519738.1| transcription elongation factor [Yersinia pestis Nepal516]
gi|270488160|ref|ZP_06205234.1| transcription elongation factor GreB [Yersinia pestis KIM D27]
gi|294502225|ref|YP_003566287.1| transcription elongation factor GreB [Yersinia pestis Z176003]
gi|25452997|sp|Q8ZJH2|GREB_YERPE RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|21960914|gb|AAM87459.1|AE013996_4 transcription elongation factor [Yersinia pestis KIM 10]
gi|45434853|gb|AAS60414.1| transcription elongation factor [Yersinia pestis biovar Microtus
str. 91001]
gi|51591337|emb|CAH23003.1| transcription elongation factor [Yersinia pseudotuberculosis IP
32953]
gi|108777738|gb|ABG20257.1| transcription elongation factor GreB [Yersinia pestis Nepal516]
gi|108781238|gb|ABG15296.1| transcription elongation factor GreB [Yersinia pestis Antiqua]
gi|115345957|emb|CAL18821.1| transcription elongation factor [Yersinia pestis CO92]
gi|145209081|gb|ABP38488.1| transcription elongation factor GreB [Yersinia pestis Pestoides F]
gi|149290225|gb|EDM40302.1| transcription elongation factor [Yersinia pestis CA88-4125]
gi|165915808|gb|EDR34416.1| transcription elongation factor GreB [Yersinia pestis biovar
Orientalis str. IP275]
gi|165919999|gb|EDR37300.1| transcription elongation factor GreB [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990548|gb|EDR42849.1| transcription elongation factor GreB [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205592|gb|EDR50072.1| transcription elongation factor GreB [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166962833|gb|EDR58854.1| transcription elongation factor GreB [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167052187|gb|EDR63595.1| transcription elongation factor GreB [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055399|gb|EDR65193.1| transcription elongation factor GreB [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169748966|gb|ACA66484.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
YPIII]
gi|186700281|gb|ACC90910.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
PB1/+]
gi|229678745|gb|EEO74850.1| transcription elongation factor [Yersinia pestis Nepal516]
gi|229690382|gb|EEO82436.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. India 195]
gi|229696357|gb|EEO86404.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229706452|gb|EEO92459.1| transcription elongation factor [Yersinia pestis Pestoides A]
gi|262360304|gb|ACY57025.1| transcription elongation factor GreB [Yersinia pestis D106004]
gi|262364255|gb|ACY60812.1| transcription elongation factor GreB [Yersinia pestis D182038]
gi|270336664|gb|EFA47441.1| transcription elongation factor GreB [Yersinia pestis KIM D27]
gi|294352684|gb|ADE63025.1| transcription elongation factor GreB [Yersinia pestis Z176003]
gi|320013271|gb|ADV96842.1| transcription elongation factor [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 171
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V VE +++ +++VG E D +SI SP+
Sbjct: 67 AKRLEVLKIVDPDPRQEGKVFFGAWVR-VENEQEEQRIFRLVGPDEFDPAKKWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D ++V P GE TY IL++
Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILEI 154
>gi|225572778|ref|ZP_03781533.1| hypothetical protein RUMHYD_00969 [Blautia hydrogenotrophica DSM
10507]
gi|225039835|gb|EEG50081.1| hypothetical protein RUMHYD_00969 [Blautia hydrogenotrophica DSM
10507]
Length = 160
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ E+
Sbjct: 8 LTYAGLKNLEEELHDLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + D+I+ G V L + ++ ++IVG EA+ G +S SP+
Sbjct: 68 EKILKNAEVVVEDEVDLDKISVGCKVKLYDYEYEEEIEFKIVGSTEANSLQGKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ALIG ++ D++ V P G Y++L++
Sbjct: 128 GKALIGAKVDDVVKVEMPAGMVEYKVLEI 156
>gi|154499802|ref|ZP_02037840.1| hypothetical protein BACCAP_03459 [Bacteroides capillosus ATCC
29799]
gi|150271400|gb|EDM98657.1| hypothetical protein BACCAP_03459 [Bacteroides capillosus ATCC
29799]
Length = 157
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 89/155 (57%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + ++ + + +++ EL + + + I EAR++GDLSEN+EY AK Q
Sbjct: 1 MAKEFKLSPERWKELKDELVYLKTVREKEVADQIKEARSFGDLSENSEYDEAKNEQGKLY 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+ENI+ VI+ G + G+ + +++ ++ +Y++VG QEAD +G +
Sbjct: 61 SRIAEVENILENCVVIEEEIHDGKTVRLGSKLKVLDVEFNEELDYEVVGSQEADPMNGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP RAL+GK +G+ + V AP G Y++L +
Sbjct: 121 SEDSPFGRALLGKSVGEDVVVEAPAGALHYKVLSI 155
>gi|153950771|ref|YP_001402929.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
IP 31758]
gi|152962266|gb|ABS49727.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
IP 31758]
Length = 171
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V VE +++ +++VG E D +SI SP+
Sbjct: 67 AKRLEVLKIVDPDPRQEGKVFFGAWVR-VENEQEEQRIFRLVGPDEFDPAKKWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D ++V P GE TY IL++
Sbjct: 126 ARALIGKQVDDEVTVQTPNGEATYWILEI 154
>gi|258646084|ref|ZP_05733553.1| transcription elongation factor GreA [Dialister invisus DSM 15470]
gi|260403459|gb|EEW97006.1| transcription elongation factor GreA [Dialister invisus DSM 15470]
Length = 160
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 89/151 (58%), Gaps = 3/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +K+Q+EL + + R + + + EA A GDLSEN+EY AK Q+ EGR+ EL
Sbjct: 9 VTKEGLEKLQKELDELRTKTRGEVAQRLKEAIAMGDLSENSEYDDAKNQQSFVEGRIKEL 68
Query: 67 ENIITRAEVIDISTMSG--DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
E I AE+ID S G R+ G TV++ ++ +IVG E+D G +S S
Sbjct: 69 EQQIRTAEIID-SGKKGRKSRVDVGMTVTIEALEDHVEETVKIVGSTESDPFEGKISNES 127
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ RAL+G + GDI+ AP G Y+++++
Sbjct: 128 PVGRALMGAKAGDIVEAEAPSGVVKYKVIKI 158
>gi|83643478|ref|YP_431913.1| transcription elongation factor GreB [Hahella chejuensis KCTC 2396]
gi|83631521|gb|ABC27488.1| transcription elongation factor GreB [Hahella chejuensis KCTC 2396]
Length = 167
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 92/153 (60%), Gaps = 3/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+TS+G +++EL++ + +RP + KA+SEA A GD SENAEY K+L+ ++ R+
Sbjct: 15 ITSEGERVLREELQYLWKVKRPEVTKAVSEAAAMGDRSENAEYIYGKKQLREIDR-RVRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + +V+D R+ FGA V+L E GD+ Y+IVG E Q G +S+ SP
Sbjct: 74 LTKRLDELKVVDRPPEDQSRVYFGAWVTL-EDEEGDEHRYRIVGSDEIGAQKGYISVDSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+A+AL+ K++ D V P G K+Y ++++ +
Sbjct: 133 MAKALLKKQVDDEAIVTTPSGRKSYFVIEIEYC 165
>gi|313889156|ref|ZP_07822812.1| transcription elongation factor GreA [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312844896|gb|EFR32301.1| transcription elongation factor GreA [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 157
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 86/155 (55%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E
Sbjct: 1 MEKDIFFTPEGLEKIENEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE ++ A++ID ++ D + G+ V + E ++ ++ Y IVG EAD G +
Sbjct: 61 ERIAKLEMMVRNAKIIDEKDLNTDVVNIGSNVKVRELDTMEEDEYTIVGSAEADPLEGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ LIG +GD++ V P G YEI +
Sbjct: 121 SNESPVGSKLIGNRVGDVVEVEVPDGIIKYEICGI 155
>gi|295110734|emb|CBL24687.1| transcription elongation factor GreA [Ruminococcus obeum A2-162]
Length = 160
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ E+
Sbjct: 8 LTYAGLKKLEDELHDLKVVKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + DRI+ G V + + ++ ++VG EA+ G +S SP+
Sbjct: 68 EKILKNAEVVVEDEVDLDRISVGCKVKVYDYEFEEEMELKLVGSTEANSLEGKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ALIG GD++ V P G Y++L++
Sbjct: 128 GKALIGAHTGDVVEVEMPMGIMKYKVLEI 156
>gi|46198565|ref|YP_004232.1| transcription elongation factor greA [Thermus thermophilus HB27]
gi|55980591|ref|YP_143888.1| transcription elongation factor GreA [Thermus thermophilus HB8]
gi|18034649|gb|AAL57613.1|AF456236_1 transcription cleavage factor GreA [Thermus thermophilus]
gi|46196187|gb|AAS80605.1| transcription elongation factor greA [Thermus thermophilus HB27]
gi|55772004|dbj|BAD70445.1| transcription elongation factor GreA [Thermus thermophilus HB8]
Length = 155
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 93/155 (60%), Gaps = 3/155 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G+ ++Q+EL + +R I +A GDL ENA Y A+ NE
Sbjct: 1 MKKPVYLTPEGYRRLQEELNHLKTVKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE++++RA +++ + D++A G V L E +G++ + IVG EAD+ SG +
Sbjct: 61 ARIAQLEDLLSRAVIVENGSF--DQVALGCQVEL-ETETGERLSLAIVGSHEADIFSGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+GK++GD++ + G + Y IL++
Sbjct: 118 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEI 152
>gi|315634956|ref|ZP_07890237.1| transcription elongation factor GreB [Aggregatibacter segnis ATCC
33393]
gi|315476218|gb|EFU66969.1| transcription elongation factor GreB [Aggregatibacter segnis ATCC
33393]
Length = 160
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ + +EL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 8 ITRQGWNVLDRELKFLWKEERPQVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V L E G+ K Y+IVG E D +SI SP+
Sbjct: 68 TKRLEVLQIVDYSPKQEGKVFFGAWVEL-ENEDGEVKQYRIVGCDEFDPAKNWISIDSPV 126
Query: 127 ARALIGKELGDIISVNAPGGE 147
ARALIGKE D I+V P G+
Sbjct: 127 ARALIGKEEDDEITVETPSGK 147
>gi|332654125|ref|ZP_08419869.1| transcription elongation factor GreA [Ruminococcaceae bacterium
D16]
gi|332517211|gb|EGJ46816.1| transcription elongation factor GreA [Ruminococcaceae bacterium
D16]
Length = 167
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 87/136 (63%), Gaps = 3/136 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K + +++EL R+ RP++++A+ EARA+GDLSEN EY+AAK+ +N NE R+ L
Sbjct: 5 LTQKDLELMRKELDHRRIVLRPQLLEAVKEARAFGDLSENFEYKAAKQEKNRNESRIRFL 64
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
EN+I A V IS SG D++ V++ ++ +++ YQIV D GL+S SP
Sbjct: 65 ENMIKTAVV--ISDQSGSDQVGLYDKVTVYMEDDDEEEVYQIVTTMRQDALKGLISKESP 122
Query: 126 IARALIGKELGDIISV 141
+ R L+G+ +GD + +
Sbjct: 123 VGRCLLGRRVGDRVHI 138
>gi|292489910|ref|YP_003532800.1| transcription elongation factor greB [Erwinia amylovora CFBP1430]
gi|292900946|ref|YP_003540315.1| transcription elongation factor [Erwinia amylovora ATCC 49946]
gi|291200794|emb|CBJ47928.1| transcription elongation factor [Erwinia amylovora ATCC 49946]
gi|291555347|emb|CBA23711.1| Transcription elongation factor greB [Erwinia amylovora CFBP1430]
gi|312174094|emb|CBX82347.1| Transcription elongation factor greB [Erwinia amylovora ATCC
BAA-2158]
Length = 159
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 87/146 (59%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYNLLKQELDFLWREERPEVTKKVAWAASLGDRSENADYQYNKKRLREIDRRIRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + ++D S ++ FGA V VE + GD K ++IVG E ++ +SI SP+
Sbjct: 66 TKCLEQLRIVDYSPQQDGKVFFGAWVE-VENDDGDIKRFRIVGYDEIFGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE+GD +V P GE + +
Sbjct: 125 ARALLKKEVGDAATVFTPAGEALWYV 150
>gi|238792874|ref|ZP_04636504.1| Transcription elongation factor greB [Yersinia intermedia ATCC
29909]
gi|238727728|gb|EEQ19252.1| Transcription elongation factor greB [Yersinia intermedia ATCC
29909]
Length = 165
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+D ++ FGA V VE +++ +++VG E D +SI SP+
Sbjct: 67 TKRLEVLKVVDPDPRQEGKVFFGAWVR-VENELEEQRIFRLVGPDEFDPAKKWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D ++V P GE TY IL++
Sbjct: 126 ARALIGKQVEDEVTVQTPNGEATYWILEI 154
>gi|221194505|ref|ZP_03567562.1| transcription elongation factor GreA [Atopobium rimae ATCC 49626]
gi|221185409|gb|EEE17799.1| transcription elongation factor GreA [Atopobium rimae ATCC 49626]
Length = 159
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T +G K+ EL +R+ E+ I++ I EAR +GDLSEN+EY AAKE Q+ NE R+
Sbjct: 7 IVLTPEGRQKLVDELAYREGEKHDEIVERIKEARGFGDLSENSEYDAAKEEQSHNESRIN 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
E+ I++ A+V++ +A G TV L E G K Y IVG E + +S S
Sbjct: 67 EIRQILSVAKVVEGDKKRKITVAIGTTVEL-EDAKGKKAKYVIVGTTETNSLEHKISNES 125
Query: 125 PIARALIGKELGDIISVNAPGGE-KTYEILQV 155
P ALIG + GD + P G K Y I +
Sbjct: 126 PAGEALIGHKKGDEVEFTTPNGNVKKYTITAI 157
>gi|307565015|ref|ZP_07627532.1| putative transcription elongation factor GreA [Prevotella amnii
CRIS 21A-A]
gi|307346328|gb|EFN91648.1| putative transcription elongation factor GreA [Prevotella amnii
CRIS 21A-A]
Length = 156
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 89/140 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ ++L+ + ERP+ AI+EA GDLSEN+EY AAKE Q E ++ E+
Sbjct: 4 MSQEGYDKLVEDLKQLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEAKILEM 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + A+++D S +S + + +TV + ++ K Y IV + EA+++ G +SI +PI
Sbjct: 64 KKTLAEAKIVDTSRLSTEAVQILSTVEMTNIDNQTKMTYTIVSETEANIKQGKISIKTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K++GDI + P G
Sbjct: 124 AQGLLNKKVGDIAEITIPRG 143
>gi|257784990|ref|YP_003180207.1| transcription elongation factor GreA [Atopobium parvulum DSM 20469]
gi|257473497|gb|ACV51616.1| transcription elongation factor GreA [Atopobium parvulum DSM 20469]
Length = 159
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 86/152 (56%), Gaps = 2/152 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T +G K+ EL +R+ E+ I++ I EAR +GDLSEN+EY AAKE Q+ NE R+
Sbjct: 7 IVLTPEGRQKLVDELAYREGEKHDEIVERIKEARGFGDLSENSEYDAAKEEQSHNESRIN 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
E+ I++ A+V++ + +A G TV L + G Y IVG E + +S S
Sbjct: 67 EIRQILSVAKVVEGGSKRKVTVAIGTTVELADAK-GKTTKYVIVGTTETNSLEHKISNES 125
Query: 125 PIARALIGKELGDIISVNAPGGE-KTYEILQV 155
P ALIG + GD + P G+ K Y I+ +
Sbjct: 126 PAGEALIGHKKGDEVEFTTPNGKVKKYTIISI 157
>gi|269140621|ref|YP_003297322.1| transcription elongation factor [Edwardsiella tarda EIB202]
gi|267986282|gb|ACY86111.1| transcription elongation factor [Edwardsiella tarda EIB202]
gi|304560408|gb|ADM43072.1| Transcription elongation factor GreB [Edwardsiella tarda FL6-60]
Length = 158
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYEKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L ++ +++D S ++ FGA V VE GD K ++IVG E ++ +SI
Sbjct: 62 VRYLRKCMSILKIVDYSPQQDGKVFFGAWVE-VENERGDIKRFRIVGYDEIFGRNDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD +V P G+ + +
Sbjct: 121 DSPMARALLKKEVGDAATVATPQGDAEWYV 150
>gi|120596941|ref|YP_961515.1| transcription elongation factor GreB [Shewanella sp. W3-18-1]
gi|120557034|gb|ABM22961.1| transcription elongation factor GreB [Shewanella sp. W3-18-1]
gi|319424532|gb|ADV52606.1| GreA/GreB family elongation factor [Shewanella putrefaciens 200]
Length = 167
Score = 96.7 bits (239), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L + R+ L
Sbjct: 6 ITRQGWLALDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S +I FGA L E ++G++ Y+IVG E D + G ++I SP+
Sbjct: 66 VKRLEELKIVDYSPQQEGKIYFGAWFEL-ENDAGERVRYRIVGKDELDTKLGYITIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D + V P G K + I ++
Sbjct: 125 ARALIGKQVDDEVVVQTPSGPKEWYINEI 153
>gi|330447154|ref|ZP_08310804.1| transcription elongation factor GreB [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328491345|dbj|GAA05301.1| transcription elongation factor GreB [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 160
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 88/146 (60%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G++K++QEL +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 VTREGYNKLKQELDSLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +VID S ++ FGA V +E + GD+K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLDVLKVIDYSPQQDGKVFFGAWVE-IENDDGDQKTFRIVGPDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE+ D I V P G+K + I
Sbjct: 125 ARALLSKEVDDDIVVTTPLGKKEWFI 150
>gi|330998037|ref|ZP_08321868.1| transcription elongation factor GreA [Paraprevotella xylaniphila
YIT 11841]
gi|329569338|gb|EGG51118.1| transcription elongation factor GreA [Paraprevotella xylaniphila
YIT 11841]
Length = 155
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 92/151 (60%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ +L+ + ERP AI+EAR GDLSEN+EY AAKE Q + E ++ +L
Sbjct: 4 MSQEGYDKLVAQLKEMETIERPAASAAIAEARDKGDLSENSEYDAAKEHQAMLEMKINQL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I A++ID S + D + + V + + K Y IV + EA+++ G +S+ +PI
Sbjct: 64 KAVIGDAKIIDTSKLKADTVQILSKVEMRNVKNNMKMTYTIVSETEANLKEGKISVQTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GD+ + P G EI + +
Sbjct: 124 AQGLLGKKVGDVAEIKIPHGTVQLEITNISF 154
>gi|323703648|ref|ZP_08115290.1| GreA/GreB family elongation factor [Desulfotomaculum nigrificans
DSM 574]
gi|323531363|gb|EGB21260.1| GreA/GreB family elongation factor [Desulfotomaculum nigrificans
DSM 574]
Length = 158
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 89/152 (58%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T G ++++EL + +R ++ + I +A +GD+SEN+EY+ AK Q EGR+
Sbjct: 6 VMLTVTGLKQLEEELEQLKTVKRRQVAERIKQAIEFGDISENSEYEDAKNEQAFIEGRIL 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ A++ID + + ++ G+ V L + GD+ Y IVG EAD +S S
Sbjct: 66 TLEKMLRNAKIIDDENLGNEVVSLGSKVRLKDLEFGDEFEYTIVGSVEADPDKNKISNES 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+ +A++G+ G I+ V+ P G YEIL ++
Sbjct: 126 PVGKAILGQPKGSIVEVSVPAGVLKYEILDII 157
>gi|291544387|emb|CBL17496.1| transcription elongation factor GreA [Ruminococcus sp. 18P13]
Length = 156
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 89/152 (58%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K ++ +G++K++Q+L + R + + + EAR++GDLSENAEY AK Q + E +
Sbjct: 3 KKQMSREGYEKLEQKLSYLITVRRAEVAQKLKEARSFGDLSENAEYDEAKNEQGILEAEI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL+ + AE+++ +S D I G+ + + + + QIVG EA+ + G +S
Sbjct: 63 AELQITLENAEIVEDDNISVDEIGMGSIIEIRRVGTDKIERLQIVGTNEANFKEGKISDE 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPI ++ + K +GD V AP GE +E++ +
Sbjct: 123 SPIGKSALKKRVGDTFLVEAPAGELEFEVVAI 154
>gi|169824685|ref|YP_001692296.1| transcription elongation factor [Finegoldia magna ATCC 29328]
gi|302380203|ref|ZP_07268675.1| transcription elongation factor GreA [Finegoldia magna
ACS-171-V-Col3]
gi|303234962|ref|ZP_07321586.1| transcription elongation factor GreA [Finegoldia magna BVS033A4]
gi|254799559|sp|B0S216|GREA_FINM2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|167831490|dbj|BAG08406.1| transcription elongation factor [Finegoldia magna ATCC 29328]
gi|302311986|gb|EFK93995.1| transcription elongation factor GreA [Finegoldia magna
ACS-171-V-Col3]
gi|302493817|gb|EFL53599.1| transcription elongation factor GreA [Finegoldia magna BVS033A4]
Length = 159
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 81/147 (55%), Gaps = 1/147 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T +G D+ ++EL + + R I + I AR +GDLSENAEY AK Q
Sbjct: 1 MADKEFLLTQEGLDQHKEELEFLKTTRRTEIAEKIKVARGFGDLSENAEYDEAKNEQAQV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ LEN++ A+VI D + G+TV+ N + YQIVG E+D +G
Sbjct: 61 EERINYLENLLLHAKVIQDDENQKDVVTVGSTVTYKNLNLNKEMTYQIVGTAESDPFAGR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146
+S SP +AL+ ++GD V PGG
Sbjct: 121 ISNESPTGKALLNLKVGDTTKVETPGG 147
>gi|188535334|ref|YP_001909131.1| transcription elongation factor GreB [Erwinia tasmaniensis Et1/99]
gi|188030376|emb|CAO98267.1| Transcription elongation factor GreB [Erwinia tasmaniensis Et1/99]
Length = 159
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + ++D S ++ FGA V VE + GD K ++IVG E ++ +SI SP+
Sbjct: 66 TKCLEQLRIVDYSPQQEGKVFFGAWVE-VENDDGDIKRFRIVGYDEIFGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD +V P GE + + + +I
Sbjct: 125 ARALLKKEVGDAATVLTPAGEALWYVNDIRYI 156
>gi|52426263|ref|YP_089400.1| transcription elongation factor GreB [Mannheimia succiniciproducens
MBEL55E]
gi|52308315|gb|AAU38815.1| GreA protein [Mannheimia succiniciproducens MBEL55E]
Length = 158
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++ + QEL++ ++ERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRAGWNVLDQELKYLWKDERPKVTQAVSDAAAMGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA + L E SG+ K Y+IVG E D +SI SP+
Sbjct: 67 SKRLEVLQIVDYNPKQEGKVFFGAWIEL-ENESGEIKQYRIVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGE 147
ARALIGK++ D + V P G+
Sbjct: 126 ARALIGKQIDDEVRVETPAGK 146
>gi|167758613|ref|ZP_02430740.1| hypothetical protein CLOSCI_00953 [Clostridium scindens ATCC 35704]
gi|167663809|gb|EDS07939.1| hypothetical protein CLOSCI_00953 [Clostridium scindens ATCC 35704]
Length = 160
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 85/149 (57%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ EL
Sbjct: 8 LTYAGLKALEDELENLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + ++I G TV + +K ++ ++IVG EA+ G +S SP+
Sbjct: 68 EGILKNAEVVVEDEVDYNKINVGCTVKVFDKTFDEEMEFKIVGSTEANSLEGKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ALIG ++GD + V G YE+L +
Sbjct: 128 GQALIGCKVGDTVEVETQAGIMEYEVLNI 156
>gi|210623236|ref|ZP_03293675.1| hypothetical protein CLOHIR_01625 [Clostridium hiranonis DSM 13275]
gi|210153773|gb|EEA84779.1| hypothetical protein CLOHIR_01625 [Clostridium hiranonis DSM 13275]
Length = 159
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 90/151 (59%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T +GFDK++ EL + R + + + A +YGDLSENAEY AK+ Q E ++
Sbjct: 7 ILLTQEGFDKLEAELEELKIVGRKDVAEKLKVAISYGDLSENAEYDEAKKEQAELEEKIL 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
++EN+I +A +ID ++ ++ G+ V L + + ++ Y IVG EAD +G +S S
Sbjct: 67 KIENMIRKATIIDEESIDLSKVTAGSIVKLYDYDFEEEVTYTIVGSTEADPFAGKISNES 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PI +A++GK GD + V P G Y+IL +
Sbjct: 127 PIGKAILGKSEGDEVEVQVPDGVVKYKILSI 157
>gi|281421867|ref|ZP_06252866.1| transcription elongation factor GreA [Prevotella copri DSM 18205]
gi|281404109|gb|EFB34789.1| transcription elongation factor GreA [Prevotella copri DSM 18205]
Length = 154
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 80/140 (57%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+D++ EL+ E P + AI+EAR GDLSEN EY AAK Q R++
Sbjct: 4 MSQEGYDELVAELQHMVNVELPAVRDAIAEARDKGDLSENFEYHAAKREQGKLLSRISFK 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ A VID S + D + + + + + NY IV EAD+ SG +SI SPI
Sbjct: 64 QKVLENARVIDKSRLKSDTVGLLSKIKITNLANKCSMNYTIVNPHEADLHSGKISIKSPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+AL+GK+ G+ + V P G
Sbjct: 124 AKALLGKKAGEEVMVKVPAG 143
>gi|219872157|ref|YP_002476532.1| transcription elongation factor GreB [Haemophilus parasuis SH0165]
gi|219692361|gb|ACL33584.1| transcription elongation factor GreB [Haemophilus parasuis SH0165]
Length = 159
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 86/151 (56%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K + R+ L
Sbjct: 7 ITRSGWQVLDQELKYLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+
Sbjct: 67 SKRLEVLQIVDYHPTQEGKVFFGAWVEL-ENEEGEIKQYRIVGCDEFDPAKQWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK++ D I V P G+ T I ++ +
Sbjct: 126 ARALIGKQIDDEIQVETPVGKVTLYINKIWY 156
>gi|315652680|ref|ZP_07905655.1| transcription elongation factor GreA [Eubacterium saburreum DSM
3986]
gi|315485058|gb|EFU75465.1| transcription elongation factor GreA [Eubacterium saburreum DSM
3986]
Length = 160
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 89/149 (59%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++EL+ + +R I I EAR GDLSENAEY AAK+ Q E R+ +L
Sbjct: 8 LTYEGLKNLEEELQDLKVNKRKEIAGKIKEAREQGDLSENAEYDAAKDEQRDIEARIEQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ AEV+ + D I G V +++K+ ++ +++IVG EAD +G +S SP+
Sbjct: 68 EALLKNAEVVVEDEVDLDTIGIGCKVKILDKDFDEELDFKIVGSTEADSLAGKISNESPL 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GK++G+ V G Y +L++
Sbjct: 128 GKALLGKKIGETAEVETQAGVSEYMVLEI 156
>gi|152989359|ref|YP_001347666.1| transcription elongation factor GreB [Pseudomonas aeruginosa PA7]
gi|150964517|gb|ABR86542.1| transcription elongation factor GreB [Pseudomonas aeruginosa PA7]
Length = 168
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGAARLRAELHELWHVRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ +R+ FGA V+L E G++ Y+IVG E D+++ +SI SP+
Sbjct: 75 RKRLENLKVVGERPADANRVYFGAWVTL-EDEDGEQARYRIVGPDELDLRNNQISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+GKEL + V P GEK + ++++
Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEI 162
>gi|113972137|ref|YP_735930.1| transcription elongation factor GreB [Shewanella sp. MR-4]
gi|113886821|gb|ABI40873.1| transcription elongation factor GreB [Shewanella sp. MR-4]
Length = 167
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L + R+ L
Sbjct: 6 ITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S +I FGA L E +G++ Y+IVG E D + G ++I SP+
Sbjct: 66 VKRLEELKIVDYSPQQEGKIYFGAWFEL-ENEAGERVRYRIVGKDELDTKLGYITIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARALIGK++ D + V P G K + I
Sbjct: 125 ARALIGKQVDDEVVVQTPSGPKEWYI 150
>gi|226944394|ref|YP_002799467.1| transcription elongation factor GreB [Azotobacter vinelandii DJ]
gi|226719321|gb|ACO78492.1| transcription elongation factor protein [Azotobacter vinelandii DJ]
Length = 165
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQAVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ +++ FGA V+L E G++ Y+IVG E D++ L+SI +P+
Sbjct: 75 TKRLEKLQVVGERPADLNKVYFGAWVTL-EDEDGEQVRYRIVGPDELDLKQNLISIDAPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+GKEL + V P GEKT+ ++ +
Sbjct: 134 ARALVGKELDAEVRVPTPTGEKTWYLVAI 162
>gi|254507342|ref|ZP_05119478.1| transcription elongation factor GreB [Vibrio parahaemolyticus 16]
gi|219549802|gb|EED26791.1| transcription elongation factor GreB [Vibrio parahaemolyticus 16]
Length = 160
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GFD++++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGFDRLKKELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ + +V+D S ++ FGA V +E GD K+++IVG E D + G +SI S
Sbjct: 66 RKRLEQVKVVDYSPQQEGKVFFGAWVE-IENEDGDVKSFRIVGPDEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ KE+ D SV P G K + + ++
Sbjct: 124 PMARALLKKEVDDEFSVKTPDGFKDWFVNRI 154
>gi|253580948|ref|ZP_04858210.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847790|gb|EES75758.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 160
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K+++EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ E+
Sbjct: 8 LTYAGLKKLEEELHDLKVVKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + D+I+ G V + + + +IVG EA+ G +S SP+
Sbjct: 68 EKILKNAEVVVEDEVDLDKISVGCKVKVHDFEFEEDIELKIVGSTEANSLEGKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ALIG GD++ V P G Y++L++
Sbjct: 128 GKALIGAHTGDVVEVEMPAGIMKYKVLEI 156
>gi|161505931|ref|YP_001573043.1| transcription elongation factor GreB [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160867278|gb|ABX23901.1| hypothetical protein SARI_04112 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 157
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D + ++ FGA V +E + GD ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYAPQQEGKVFFGAWVE-IENDDGDTLKFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE + +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPVGEANWYV 150
>gi|238921494|ref|YP_002935009.1| transcription elongation factor GreB [Edwardsiella ictaluri 93-146]
gi|238871063|gb|ACR70774.1| transcription elongation factor GreB [Edwardsiella ictaluri 93-146]
Length = 158
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYEKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L ++ +++D + ++ FGA V VE GD K ++IVG E ++ +SI
Sbjct: 62 VRYLRKCMSILKIVDYAPQQNGKVFFGAWVE-VENERGDIKRFRIVGYDEIFGRNDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD +V P G+ + +
Sbjct: 121 DSPMARALLKKEVGDAATVATPQGDAEWYV 150
>gi|308188422|ref|YP_003932553.1| Transcription elongation factor greB [Pantoea vagans C9-1]
gi|308058932|gb|ADO11104.1| Transcription elongation factor greB [Pantoea vagans C9-1]
Length = 157
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GFDK++ EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGFDKLKAELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + ++D S ++ FGA V +E + GD K ++IVG E + +SI SP+
Sbjct: 66 TKSLEQLRIVDYSPQQDGKVFFGAWVE-IENDEGDLKRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGG 146
ARAL+ KE+GD +V P G
Sbjct: 125 ARALLKKEVGDAATVETPLG 144
>gi|119776641|ref|YP_929381.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
gi|119769141|gb|ABM01712.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
Length = 165
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG++ + +EL++ +E RP I + EA A GD SENA+Y K L + R+ L
Sbjct: 8 ITRKGWEALDKELKYLWKEYRPEITLKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V L E + G Y+IVG E D + G ++I SP+
Sbjct: 68 IKRLEVLKIVDYSPQQEGKVFFGAWVEL-ENDEGAVVRYRIVGKDEIDTKKGYITIDSPM 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D + V P G K + I ++
Sbjct: 127 ARALIGKQVDDEVVVQTPSGRKEWFINEI 155
>gi|302336411|ref|YP_003801618.1| GreA/GreB family elongation factor [Olsenella uli DSM 7084]
gi|301320251|gb|ADK68738.1| GreA/GreB family elongation factor [Olsenella uli DSM 7084]
Length = 157
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 6/158 (3%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K I +T +G K+ EL +R+ E R I++ I EAR +GDLSENAEY AAKE Q+ N
Sbjct: 1 MANKEIILTPEGRQKLVDELAYREGERRDEIVERIKEARGFGDLSENAEYDAAKEEQSQN 60
Query: 60 EGRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ E+ I+ A+V++ G+ ++ G TV L E G K ++ IVG E +
Sbjct: 61 ESRVNEIRQILVAAKVVERG--EGELSVSIGTTVEL-EDAKGKKTSFTIVGTTETNSLEH 117
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155
+S SP LIG +GD +S P G+ +TY ++ +
Sbjct: 118 RISNESPAGAVLIGHVVGDEVSFTTPNGKLRTYTVVNI 155
>gi|304397825|ref|ZP_07379701.1| GreA/GreB family elongation factor [Pantoea sp. aB]
gi|304354536|gb|EFM18907.1| GreA/GreB family elongation factor [Pantoea sp. aB]
Length = 157
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 83/140 (59%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GFDK++ EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGFDKLKAELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + ++D S ++ FGA V +E + GD K ++IVG E + +SI SP+
Sbjct: 66 TKSLEQLRIVDYSPQQDGKVFFGAWVE-IENDEGDLKRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGG 146
ARAL+ KE+GD +V P G
Sbjct: 125 ARALLKKEVGDAATVETPVG 144
>gi|324009407|gb|EGB78626.1| transcription elongation factor GreB [Escherichia coli MS 57-2]
Length = 170
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P G ++ +
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGGASWYV 162
>gi|15924600|ref|NP_372134.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus Mu50]
gi|15927190|ref|NP_374723.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus N315]
gi|21283289|ref|NP_646377.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MW2]
gi|49483855|ref|YP_041079.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49486443|ref|YP_043664.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57652001|ref|YP_186505.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus COL]
gi|82751210|ref|YP_416951.1| transcription elongation factor GreA [Staphylococcus aureus RF122]
gi|87161697|ref|YP_494262.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88195419|ref|YP_500223.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148268091|ref|YP_001247034.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus JH9]
gi|150394159|ref|YP_001316834.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus JH1]
gi|151221723|ref|YP_001332545.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979928|ref|YP_001442187.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus Mu3]
gi|161509837|ref|YP_001575496.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221141120|ref|ZP_03565613.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253315240|ref|ZP_04838453.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253733139|ref|ZP_04867304.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus TCH130]
gi|255006395|ref|ZP_05144996.2| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425734|ref|ZP_05602158.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257428395|ref|ZP_05604793.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257431033|ref|ZP_05607412.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 68-397]
gi|257433719|ref|ZP_05610077.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus E1410]
gi|257436634|ref|ZP_05612678.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus M876]
gi|257793685|ref|ZP_05642664.1| transcription elongation factor greA [Staphylococcus aureus A9781]
gi|258411016|ref|ZP_05681296.1| transcription elongation factor GreA [Staphylococcus aureus A9763]
gi|258420182|ref|ZP_05683137.1| transcription elongation factor greA [Staphylococcus aureus A9719]
gi|258424036|ref|ZP_05686918.1| transcription elongation factor greA [Staphylococcus aureus A9635]
gi|258438184|ref|ZP_05689468.1| transcription elongation factor greA [Staphylococcus aureus A9299]
gi|258443647|ref|ZP_05691986.1| transcription elongation factor greA [Staphylococcus aureus A8115]
gi|258446854|ref|ZP_05695008.1| transcription elongation factor greA [Staphylococcus aureus A6300]
gi|258448768|ref|ZP_05696880.1| transcription elongation factor greA [Staphylococcus aureus A6224]
gi|258450563|ref|ZP_05698625.1| transcription elongation factor greA [Staphylococcus aureus A5948]
gi|258453587|ref|ZP_05701565.1| transcription elongation factor greA [Staphylococcus aureus A5937]
gi|262048605|ref|ZP_06021488.1| transcription elongation factor [Staphylococcus aureus D30]
gi|262051265|ref|ZP_06023489.1| transcription elongation factor [Staphylococcus aureus 930918-3]
gi|269203236|ref|YP_003282505.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus ED98]
gi|282893113|ref|ZP_06301347.1| transcription elongation factor greA [Staphylococcus aureus A8117]
gi|282904191|ref|ZP_06312079.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus C160]
gi|282906017|ref|ZP_06313872.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282908929|ref|ZP_06316747.1| transcription elongation factor GreB [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282911247|ref|ZP_06319049.1| transcription elongation factor GreB [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282914415|ref|ZP_06322201.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus M899]
gi|282916879|ref|ZP_06324637.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus D139]
gi|282919385|ref|ZP_06327120.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus C427]
gi|282920157|ref|ZP_06327882.1| transcription elongation factor greA [Staphylococcus aureus A9765]
gi|282924710|ref|ZP_06332378.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus C101]
gi|282928244|ref|ZP_06335849.1| transcription elongation factor greA [Staphylococcus aureus A10102]
gi|283770684|ref|ZP_06343576.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus H19]
gi|283958371|ref|ZP_06375822.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus A017934/97]
gi|284024667|ref|ZP_06379065.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus 132]
gi|293503490|ref|ZP_06667337.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510507|ref|ZP_06669213.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus M809]
gi|293531047|ref|ZP_06671729.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus M1015]
gi|294848639|ref|ZP_06789385.1| transcription elongation factor greA [Staphylococcus aureus A9754]
gi|295406732|ref|ZP_06816537.1| transcription elongation factor greA [Staphylococcus aureus A8819]
gi|295428187|ref|ZP_06820819.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296276729|ref|ZP_06859236.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MR1]
gi|297207670|ref|ZP_06924105.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297245686|ref|ZP_06929551.1| transcription elongation factor greA [Staphylococcus aureus A8796]
gi|297590846|ref|ZP_06949484.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MN8]
gi|300911752|ref|ZP_07129195.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus TCH70]
gi|304380793|ref|ZP_07363460.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|54037220|sp|P64284|GREA_STAAW RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54037228|sp|P99156|GREA_STAAN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54041330|sp|P64283|GREA_STAAM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|56748966|sp|Q6G8V9|GREA_STAAS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|56749020|sp|Q6GG93|GREA_STAAR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71152090|sp|Q5HFF2|GREA_STAAC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123291785|sp|Q2FXW7|GREA_STAA8 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123722377|sp|Q2FGB6|GREA_STAA3 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123740964|sp|Q2YT68|GREA_STAAB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166200745|sp|A7X319|GREA_STAA1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|172048917|sp|A6QHF1|GREA_STAAE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189042249|sp|A6U279|GREA_STAA2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189042250|sp|A5ITD5|GREA_STAA9 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189042251|sp|A8Z4E8|GREA_STAAT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|13701408|dbj|BAB42702.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus N315]
gi|14247381|dbj|BAB57772.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus Mu50]
gi|21204729|dbj|BAB95425.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus MW2]
gi|49241984|emb|CAG40681.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49244886|emb|CAG43347.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57286187|gb|AAW38281.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus COL]
gi|82656741|emb|CAI81170.1| transcription elongation factor [Staphylococcus aureus RF122]
gi|87127671|gb|ABD22185.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87202977|gb|ABD30787.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|147741160|gb|ABQ49458.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus JH9]
gi|149946611|gb|ABR52547.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus JH1]
gi|150374523|dbj|BAF67783.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156722063|dbj|BAF78480.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus Mu3]
gi|160368646|gb|ABX29617.1| elongation factor GreA [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253728895|gb|EES97624.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus TCH130]
gi|257271428|gb|EEV03574.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257275236|gb|EEV06723.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257278236|gb|EEV08878.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 68-397]
gi|257281812|gb|EEV11949.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus E1410]
gi|257283985|gb|EEV14108.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus M876]
gi|257787657|gb|EEV25997.1| transcription elongation factor greA [Staphylococcus aureus A9781]
gi|257840166|gb|EEV64630.1| transcription elongation factor GreA [Staphylococcus aureus A9763]
gi|257843893|gb|EEV68287.1| transcription elongation factor greA [Staphylococcus aureus A9719]
gi|257845657|gb|EEV69689.1| transcription elongation factor greA [Staphylococcus aureus A9635]
gi|257848228|gb|EEV72219.1| transcription elongation factor greA [Staphylococcus aureus A9299]
gi|257851053|gb|EEV74996.1| transcription elongation factor greA [Staphylococcus aureus A8115]
gi|257854429|gb|EEV77378.1| transcription elongation factor greA [Staphylococcus aureus A6300]
gi|257858046|gb|EEV80935.1| transcription elongation factor greA [Staphylococcus aureus A6224]
gi|257861721|gb|EEV84520.1| transcription elongation factor greA [Staphylococcus aureus A5948]
gi|257864318|gb|EEV87068.1| transcription elongation factor greA [Staphylococcus aureus A5937]
gi|259160902|gb|EEW45922.1| transcription elongation factor [Staphylococcus aureus 930918-3]
gi|259163252|gb|EEW47811.1| transcription elongation factor [Staphylococcus aureus D30]
gi|262075526|gb|ACY11499.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus ED98]
gi|269941096|emb|CBI49482.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus TW20]
gi|282313545|gb|EFB43940.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus C101]
gi|282317195|gb|EFB47569.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus C427]
gi|282319366|gb|EFB49718.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus D139]
gi|282321596|gb|EFB51921.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus M899]
gi|282324942|gb|EFB55252.1| transcription elongation factor GreB [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282327193|gb|EFB57488.1| transcription elongation factor GreB [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282331309|gb|EFB60823.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282590051|gb|EFB95133.1| transcription elongation factor greA [Staphylococcus aureus A10102]
gi|282594505|gb|EFB99490.1| transcription elongation factor greA [Staphylococcus aureus A9765]
gi|282595809|gb|EFC00773.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus C160]
gi|282764431|gb|EFC04557.1| transcription elongation factor greA [Staphylococcus aureus A8117]
gi|283460831|gb|EFC07921.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus H19]
gi|283470887|emb|CAQ50098.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Staphylococcus aureus subsp. aureus ST398]
gi|283790520|gb|EFC29337.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus A017934/97]
gi|285817292|gb|ADC37779.1| Transcription elongation factor GreA [Staphylococcus aureus
04-02981]
gi|290920315|gb|EFD97381.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus M1015]
gi|291095156|gb|EFE25421.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466871|gb|EFF09391.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus M809]
gi|294824665|gb|EFG41088.1| transcription elongation factor greA [Staphylococcus aureus A9754]
gi|294968479|gb|EFG44503.1| transcription elongation factor greA [Staphylococcus aureus A8819]
gi|295128545|gb|EFG58179.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296887687|gb|EFH26585.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297177337|gb|EFH36589.1| transcription elongation factor greA [Staphylococcus aureus A8796]
gi|297575732|gb|EFH94448.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MN8]
gi|298694890|gb|ADI98112.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus ED133]
gi|300885998|gb|EFK81200.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus TCH70]
gi|302333284|gb|ADL23477.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302751439|gb|ADL65616.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304340669|gb|EFM06602.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312437922|gb|ADQ76993.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus TCH60]
gi|312829997|emb|CBX34839.1| transcription elongation factor greA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315195510|gb|EFU25897.1| elongation factor GreA [Staphylococcus aureus subsp. aureus CGS00]
gi|315198693|gb|EFU29021.1| elongation factor GreA [Staphylococcus aureus subsp. aureus CGS01]
gi|320140503|gb|EFW32357.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320144042|gb|EFW35811.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MRSA177]
gi|323439043|gb|EGA96775.1| transcription elongation factor GreA [Staphylococcus aureus O11]
gi|323442814|gb|EGB00439.1| transcription elongation factor GreA [Staphylococcus aureus O46]
gi|329314285|gb|AEB88698.1| Transcription elongation factor greA [Staphylococcus aureus subsp.
aureus T0131]
gi|329727213|gb|EGG63669.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus 21172]
gi|329728459|gb|EGG64896.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus 21189]
gi|329733259|gb|EGG69596.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus 21193]
Length = 158
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +GF+K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 8 PMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E+++ A +I+ T + + G TV+ VE ++++YQIVG E+D +G +S SP
Sbjct: 68 IEHMLRNALIIE-DTGDNNVVKIGKTVTFVELPGDEEESYQIVGSAESDAFNGKISNESP 126
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155
+A+ALIGK L D + V P GGE +I+ +
Sbjct: 127 MAKALIGKGLDDEVRVPLPNGGEMNVKIVNI 157
>gi|226324188|ref|ZP_03799706.1| hypothetical protein COPCOM_01967 [Coprococcus comes ATCC 27758]
gi|225207737|gb|EEG90091.1| hypothetical protein COPCOM_01967 [Coprococcus comes ATCC 27758]
Length = 160
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/152 (39%), Positives = 89/152 (58%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G K++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+
Sbjct: 5 KTLLTYTGLKKLEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEARI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE I+ AEV+ + D I G TV + +K ++ +Q+VG EA+ G +S
Sbjct: 65 EELEKILKNAEVVVEDDVDLDTINIGCTVDVYDKEFEEEIVFQLVGSTEANSLEGKISNE 124
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +ALIGK++GD+++V G YE+L++
Sbjct: 125 SPVGKALIGKKVGDVVAVETQAGVIEYEVLKI 156
>gi|332881700|ref|ZP_08449348.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332680339|gb|EGJ53288.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 155
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 92/151 (60%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ +L+ + ERP AI+EAR GDLSEN+EY AAKE Q + E ++ +L
Sbjct: 4 MSQEGYDKLVAQLKEMETIERPAASAAIAEARDKGDLSENSEYDAAKEHQAMLEMKINQL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I A++ID S + D + + V + + K Y IV + EA+++ G +S+ +PI
Sbjct: 64 KAVIGDAKIIDTSKLKADTVQILSKVEMRNVKNNMKMAYTIVSETEANLKEGKISVQTPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GD+ + P G EI + +
Sbjct: 124 AQGLLGKKVGDVAEIKIPHGTVQLEITNISF 154
>gi|315223125|ref|ZP_07864993.1| transcription elongation factor GreA [Streptococcus anginosus
F0211]
gi|315187814|gb|EFU21561.1| transcription elongation factor GreA [Streptococcus anginosus
F0211]
Length = 160
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 83/129 (64%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ ++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDAVAQDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G TV++ E D++ Y IVG AD +G VS SPI +ALIGK+ GD +V P G
Sbjct: 88 AIGKTVTIQEVGETDEEVYMIVGAAGADAFAGKVSNESPIGQALIGKKTGDTATVETPVG 147
Query: 147 EKTYEILQV 155
+IL+V
Sbjct: 148 SYDVKILKV 156
>gi|238758699|ref|ZP_04619873.1| Transcription elongation factor greB [Yersinia aldovae ATCC 35236]
gi|238702996|gb|EEP95539.1| Transcription elongation factor greB [Yersinia aldovae ATCC 35236]
Length = 165
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + EL + +EERP + +A+SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWQALDSELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V VE +++ +++VG E D +SI SP+
Sbjct: 67 TKRLEVLKIVDPDPRQEGKVFFGAWVR-VENELEEQRTFRLVGPDEFDPAKKWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK++ D ++V P GE TY IL +
Sbjct: 126 ARALIGKQVDDEVTVQTPNGEVTYWILAI 154
>gi|302385514|ref|YP_003821336.1| GreA/GreB family elongation factor [Clostridium saccharolyticum
WM1]
gi|302196142|gb|ADL03713.1| GreA/GreB family elongation factor [Clostridium saccharolyticum
WM1]
Length = 160
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MVDK + T +G K + EL+ + +R + + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MVDKKNILTYEGLKKYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ELE ++ AEV+ + D+I G V + + + ++ ++IVG EA+
Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKVYDVDEDEEMEFKIVGSTEANSLQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ ALIG+++GD++ V G Y++L++
Sbjct: 121 ISNESPVGHALIGRKVGDVVDVETQSGVIQYKVLEI 156
>gi|281425411|ref|ZP_06256324.1| transcription elongation factor GreA [Prevotella oris F0302]
gi|299141561|ref|ZP_07034697.1| transcription elongation factor GreA [Prevotella oris C735]
gi|281400404|gb|EFB31235.1| transcription elongation factor GreA [Prevotella oris F0302]
gi|298576897|gb|EFI48767.1| transcription elongation factor GreA [Prevotella oris C735]
Length = 156
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 86/140 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+D + EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ ++
Sbjct: 4 MSQEGYDNLVAELQRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINKM 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A+++D+S +S D + + V + + K Y IV + EA+++ G +SI +PI
Sbjct: 64 KVSIAEAKIVDLSRLSTDAVQIMSKVEMTNMGTKAKMVYTIVSESEANLKQGKISIKTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ + G+I+ V P G
Sbjct: 124 AQGLLNHKEGEIVEVKIPRG 143
>gi|262278089|ref|ZP_06055874.1| transcription elongation factor and transcript cleavage
[Acinetobacter calcoaceticus RUH2202]
gi|262258440|gb|EEY77173.1| transcription elongation factor and transcript cleavage
[Acinetobacter calcoaceticus RUH2202]
Length = 164
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125
+ ++ID S ++ FGA V +E G++K +IVG D+ D +SI SP
Sbjct: 66 GKRLEELKIIDYSPEQAGKVYFGAWVE-IENEEGEQKTLRIVGIDEIYDHHPQHISIESP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+GKE+ D I V+ P G+K + I
Sbjct: 125 MARALLGKEVDDEIEVHTPSGKKLWYI 151
>gi|254362550|ref|ZP_04978651.1| transcription elongation factor [Mannheimia haemolytica PHL213]
gi|261493833|ref|ZP_05990347.1| transcription elongation factor [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261495058|ref|ZP_05991525.1| transcription elongation factor [Mannheimia haemolytica serotype A2
str. OVINE]
gi|153094151|gb|EDN75047.1| transcription elongation factor [Mannheimia haemolytica PHL213]
gi|261309300|gb|EEY10536.1| transcription elongation factor [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310536|gb|EEY11725.1| transcription elongation factor [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 160
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRSGWQALDQELKFLWREERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V L E G+ K Y+IVG E D +SI SP+
Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEEGEAKQYRIVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGE 147
ARALIGK++ D I V P G+
Sbjct: 126 ARALIGKQVDDEIRVETPLGK 146
>gi|163846801|ref|YP_001634845.1| transcription elongation factor GreA [Chloroflexus aurantiacus
J-10-fl]
gi|222524620|ref|YP_002569091.1| transcription elongation factor GreA [Chloroflexus sp. Y-400-fl]
gi|229485761|sp|A9WK05|GREA_CHLAA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799554|sp|B9LBX1|GREA_CHLSY RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|163668090|gb|ABY34456.1| transcription elongation factor GreA [Chloroflexus aurantiacus
J-10-fl]
gi|222448499|gb|ACM52765.1| transcription elongation factor GreA [Chloroflexus sp. Y-400-fl]
Length = 157
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 93/149 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL + ER +I + I+ A+ GD+SE+ EY+ AK+ Q L EGR+ EL
Sbjct: 8 LTREGRARLEAELEYLTTVERKQIAERIAAAKELGDISESGEYEDAKKAQALLEGRIREL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+++++RAEVID S + G++V++ ++ G ++ + IVG EA+ + G +S SP+
Sbjct: 68 KHLLSRAEVIDEDQASNGEVRVGSSVTVRFEDDGTEETWTIVGSAEANPRQGRISNESPL 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL+GK + ++V+ P G IL+V
Sbjct: 128 GAALLGKRARNKVTVHTPSGVMKLTILKV 156
>gi|300718779|ref|YP_003743582.1| transcription elongation factor [Erwinia billingiae Eb661]
gi|299064615|emb|CAX61735.1| Transcription elongation factor [Erwinia billingiae Eb661]
Length = 159
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 92/152 (60%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK++QEL + +E+RP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYDKLKQELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +++ S ++ FGA V +E ++GD K ++I G E ++ +SI SP+
Sbjct: 66 TKCLEQLRIVEYSPQQDGKVFFGAWVE-IENDAGDVKRFRIAGYDEIFGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ V P G+ + ++ + ++
Sbjct: 125 ARALLKKEVGDLAVVPTPVGDAHWYVVAIDYV 156
>gi|219849234|ref|YP_002463667.1| transcription elongation factor GreA [Chloroflexus aggregans DSM
9485]
gi|254799553|sp|B8G358|GREA_CHLAD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|219543493|gb|ACL25231.1| transcription elongation factor GreA [Chloroflexus aggregans DSM
9485]
Length = 157
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 93/149 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL ER +I + I+ A+ GD+SE+ EY+ AK+ Q L EGR+ EL
Sbjct: 8 LTREGRARLEAELEHLMTVERKQIAERIAAAKELGDISESGEYEDAKKAQALLEGRIREL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+++++RAE+ID S + G++V++ ++ G ++ + IVG EA+ + G +S SPI
Sbjct: 68 KHLLSRAEIIDEDQASTGEVRIGSSVTVRFEDDGSEETWTIVGSAEANPRQGRISNESPI 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL+GK + + ++V+ P G IL+V
Sbjct: 128 GAALLGKRVRNKVTVHTPSGVMKLTILKV 156
>gi|253732265|ref|ZP_04866430.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253724054|gb|EES92783.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus USA300_TCH959]
Length = 158
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +GF+K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 8 PMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E+++ A +I+ T + + G TV+ VE ++++YQIVG E+D +G +S SP
Sbjct: 68 IEHMLRNALIIE-DTGDNNIVKIGKTVTFVELPGDEEESYQIVGSAESDAFNGKISNESP 126
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155
+A+ALIGK L D + V P GGE +I+ +
Sbjct: 127 MAKALIGKGLDDEVRVPLPNGGEMNVKIVNI 157
>gi|325576611|ref|ZP_08147329.1| transcription elongation factor GreB [Haemophilus parainfluenzae
ATCC 33392]
gi|325161174|gb|EGC73289.1| transcription elongation factor GreB [Haemophilus parainfluenzae
ATCC 33392]
Length = 158
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V L E G+ K Y++VG E D +SI SP+
Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-EDEEGEVKQYRLVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGE 147
ARALIGK++ D I V P G+
Sbjct: 126 ARALIGKDVDDEIHVETPSGK 146
>gi|296105101|ref|YP_003615247.1| transcription elongation factor GreB [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059560|gb|ADF64298.1| transcription elongation factor GreB [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 157
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G+ ++IVG E + +SI
Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGNTLRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ V P GE ++ + ++ ++
Sbjct: 121 DSPMARALLKKEVGDLAVVQTPAGEASWYVNEITYV 156
>gi|49081530|gb|AAT50165.1| PA2859 [synthetic construct]
Length = 169
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGAARLRAELHELWHVRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ +R+ FGA V+L E G++ Y+IVG E D+++ +SI SP+
Sbjct: 75 RKRLENLKVVGERPADPNRVYFGAWVTL-EDEDGEQARYRIVGPDELDLRNNQISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+GKEL + V P GEK + ++++
Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEI 162
>gi|59710728|ref|YP_203504.1| transcription elongation factor GreB [Vibrio fischeri ES114]
gi|59478829|gb|AAW84616.1| transcription elongation factor [Vibrio fischeri ES114]
Length = 157
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 1/144 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF+K+Q EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGFNKLQDELTFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+D S +I FGA V +E GD +++IVG E ++ +SI SP+
Sbjct: 66 RKRLDQVKVVDYSPQQDGKIFFGAFVE-IENEQGDTLSFRIVGPDEIFGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTY 150
ARALI KE+ + + V P G+K +
Sbjct: 125 ARALIKKEVDEDVIVKTPDGDKEW 148
>gi|325662823|ref|ZP_08151392.1| hypothetical protein HMPREF0490_02132 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331086546|ref|ZP_08335624.1| hypothetical protein HMPREF0987_01927 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325470875|gb|EGC74104.1| hypothetical protein HMPREF0490_02132 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330410379|gb|EGG89811.1| hypothetical protein HMPREF0987_01927 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 160
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + T G +++EL + +R + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKTILTYAGLKALEEELENLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ E+E I+ AEV+ + D+I G +V + +K ++ ++IVG EA+ G
Sbjct: 61 EARIEEIEKILKNAEVVVEDEVDFDKINIGCSVLVYDKEFDEEIQFKIVGSTEANSLQGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +AL+GK++GD I V G Y++L++
Sbjct: 121 ISNESPVGQALLGKKVGDEIQVETQAGVMEYKVLKI 156
>gi|319892663|ref|YP_004149538.1| Transcription elongation factor GreA [Staphylococcus
pseudintermedius HKU10-03]
gi|317162359|gb|ADV05902.1| Transcription elongation factor GreA [Staphylococcus
pseudintermedius HKU10-03]
gi|323464299|gb|ADX76452.1| transcription elongation factor GreA [Staphylococcus
pseudintermedius ED99]
Length = 158
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G++K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 8 PMTQEGYEKLEKELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E ++ A +I+ T + G TV+ VE D+++YQIVG E+D +G +S SP
Sbjct: 68 IETMLRHALIIE-DTGDNHVVQIGKTVTFVELPGNDEESYQIVGSAESDAFNGKISNESP 126
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155
+A+ALIGK++ D + V P GGE +I+ +
Sbjct: 127 MAQALIGKQVDDEVRVPLPNGGEMNVKIVDI 157
>gi|73662460|ref|YP_301241.1| transcription elongation factor GreA [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|123747876|sp|Q49Y48|GREA_STAS1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|72494975|dbj|BAE18296.1| transcription elongation factor [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 158
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +GF+K++ EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 8 PMTQEGFEKLEHELEELKTVKRPEVVEKIKIARSFGDLSENSEYDAAKDEQGFIEQDIQR 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+EN++ A +I+ T + + + G TV++VE +++ YQIVG E+D G +S SP
Sbjct: 68 VENMLRNALIIE-DTGNNNEVQLGKTVTIVELPGEEEEEYQIVGSAESDAFKGKISNESP 126
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155
+A++LIGK+L D + V P GGE +I+ +
Sbjct: 127 MAKSLIGKKLDDEVRVPLPNGGEINVKIVNI 157
>gi|15598055|ref|NP_251549.1| transcription elongation factor GreB [Pseudomonas aeruginosa PAO1]
gi|107102408|ref|ZP_01366326.1| hypothetical protein PaerPA_01003470 [Pseudomonas aeruginosa PACS2]
gi|116050862|ref|YP_790315.1| transcription elongation factor GreB [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218890942|ref|YP_002439808.1| transcription elongation factor GreB [Pseudomonas aeruginosa
LESB58]
gi|254235846|ref|ZP_04929169.1| transcription elongation factor GreB [Pseudomonas aeruginosa C3719]
gi|296388654|ref|ZP_06878129.1| transcription elongation factor GreB [Pseudomonas aeruginosa PAb1]
gi|313108005|ref|ZP_07794172.1| transcription elongation factor GreB [Pseudomonas aeruginosa 39016]
gi|25453010|sp|Q9HZY5|GREB_PSEAE RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|9948947|gb|AAG06247.1|AE004712_7 transcription elongation factor GreB [Pseudomonas aeruginosa PAO1]
gi|115586083|gb|ABJ12098.1| transcription elongation factor GreB [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126167777|gb|EAZ53288.1| transcription elongation factor GreB [Pseudomonas aeruginosa C3719]
gi|218771167|emb|CAW26932.1| transcription elongation factor GreB [Pseudomonas aeruginosa
LESB58]
gi|310880674|gb|EFQ39268.1| transcription elongation factor GreB [Pseudomonas aeruginosa 39016]
Length = 168
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 88/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGAARLRAELHELWHVRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ +R+ FGA V+L E G++ Y+IVG E D+++ +SI SP+
Sbjct: 75 RKRLENLKVVGERPADPNRVYFGAWVTL-EDEDGEQARYRIVGPDELDLRNNQISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+GKEL + V P GEK + ++++
Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEI 162
>gi|269114909|ref|YP_003302672.1| transcription elongation factor GreA [Mycoplasma hominis]
gi|268322534|emb|CAX37269.1| Transcription elongation factor greA(Transcript cleavage factor
greA) [Mycoplasma hominis ATCC 23114]
Length = 156
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 93/150 (62%), Gaps = 5/150 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI +T + + Q++L++ Q+ RP++I+ I EAR GDLSENAEY +A++ Q E
Sbjct: 6 NKIYLTEESLKQYQEKLKYLQEVARPQVIEEIKEARNQGDLSENAEYDSARDKQAAIENE 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+++I+ E+ I + S I G+TV L+ N+ + +IVG +AD + +S
Sbjct: 66 ILEIQHILENVEI--IKSTSTHTIRIGSTVKLININTNEISEVKIVGALDADPFNNKISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
+SP+A AL GK++G +I V AP K Y++
Sbjct: 124 TSPLAIALNGKKVGQVIEVEAP---KKYKV 150
>gi|197333913|ref|YP_002154890.1| transcription elongation factor GreB [Vibrio fischeri MJ11]
gi|197315403|gb|ACH64850.1| transcription elongation factor GreB [Vibrio fischeri MJ11]
Length = 155
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 1/144 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF+K+Q EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGFNKLQDELTFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+D S +I FGA V +E GD +++IVG E ++ +SI SP+
Sbjct: 66 RKRLDQVKVVDYSPQQDGKIFFGAFVE-IENEQGDTLSFRIVGPDEIFGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTY 150
ARALI KE+ + + V P G+K +
Sbjct: 125 ARALIKKEVDEDVIVKTPDGDKEW 148
>gi|158319500|ref|YP_001512007.1| transcription elongation factor GreA [Alkaliphilus oremlandii
OhILAs]
gi|166987608|sp|A8MLU4|GREA_ALKOO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|158139699|gb|ABW18011.1| transcription elongation factor GreA [Alkaliphilus oremlandii
OhILAs]
Length = 159
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M D+ + +T++G K++ EL + R I + I +A A+GD+SEN+EY AK Q
Sbjct: 2 MADREVVLTAQGLKKLEDELELLKTVRRKEIAERIKQAIAFGDISENSEYDEAKNEQAQV 61
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ +LE ++ +A +ID ++ D ++ G+ V + + + Y IVG EAD
Sbjct: 62 EDRINKLETMLRKAVIIDEEDINTDIVSIGSIVQVNDLEFDEIVEYTIVGSTEADPYELK 121
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ RAL+G ++GD++ V P G YEIL++
Sbjct: 122 ISNESPVGRALLGTKVGDVVEVQIPDGVTKYEILKI 157
>gi|315644403|ref|ZP_07897543.1| transcription elongation factor GreA [Paenibacillus vortex V453]
gi|315280280|gb|EFU43572.1| transcription elongation factor GreA [Paenibacillus vortex V453]
Length = 158
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T G K++ EL + +R + + I A YGD+SEN+EY+ AK Q
Sbjct: 1 MSDKEVILTQDGLKKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I+ ++ D I G TV + + GD Y IVG E+D +
Sbjct: 61 EGRIITLEKMLRNARIINNDDINTDIIGVGNTVLVEDLEFGDTMEYTIVGSAESDPLNNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +A+IGK+ G ++ VN P G Y+I+ +
Sbjct: 121 ISNESPVGKAIIGKQKGSVVDVNVPAGVIQYKIVDI 156
>gi|197303207|ref|ZP_03168249.1| hypothetical protein RUMLAC_01930 [Ruminococcus lactaris ATCC
29176]
gi|197297747|gb|EDY32305.1| hypothetical protein RUMLAC_01930 [Ruminococcus lactaris ATCC
29176]
Length = 167
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +KI+ E+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTKSDVEKIKAEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKAKNQNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ AE+++ + D I TV L ++ + + Y+IV +GLVSI SPI
Sbjct: 65 ERMLKTAEIVEDHS-KADEIGLNNTVELYCEDDDEVETYRIVTSVRGSSLNGLVSIESPI 123
Query: 127 ARALIGKELGD--IISVNAPGG 146
+AL+G + GD I VN G
Sbjct: 124 GKALLGHKEGDRVYIKVNDDFG 145
>gi|182420076|ref|ZP_02951310.1| transcription elongation factor GreA [Clostridium butyricum 5521]
gi|237669518|ref|ZP_04529498.1| transcription elongation factor GreA [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182376113|gb|EDT73700.1| transcription elongation factor GreA [Clostridium butyricum 5521]
gi|237654962|gb|EEP52522.1| transcription elongation factor GreA [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 161
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 87/149 (58%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EGR+ L
Sbjct: 10 MTYEGVKKLENELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAFTEGRIVTL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN++ A V+D S + D ++ G+ V + + ++ Y IVG EAD + +S SP+
Sbjct: 70 ENMLKNAVVVDESEIPKDVVSVGSKVKVKDYEFDEEVEYSIVGSAEADPMNFKISNESPV 129
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ALIGK++G+I+ V P G +EIL +
Sbjct: 130 GSALIGKKIGEIVEVQIPDGVNKFEILGI 158
>gi|160878872|ref|YP_001557840.1| GreA/GreB family elongation factor [Clostridium phytofermentans
ISDg]
gi|160427538|gb|ABX41101.1| GreA/GreB family elongation factor [Clostridium phytofermentans
ISDg]
Length = 167
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T DK+Q+E+ +R+ R I A+ EARA+GDLSEN EY AAK+ +N NEGR+ L
Sbjct: 5 LTKNDIDKMQEEIEYRKLTVRKEAIDAVKEARAHGDLSENFEYYAAKKDKNKNEGRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I AEVI+ + S D I TVS+ + + + Y+++ + GL+SI SP+
Sbjct: 65 ERMIKTAEVIEDHS-SEDEIGINNTVSIYFEEDNEIEKYKLITTVRENSLQGLISIESPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+A++G ++ D + V Y I++ +
Sbjct: 124 GKAILGHKVEDRVYVKVRDDYGYYVIIKAI 153
>gi|304405775|ref|ZP_07387433.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus
YK9]
gi|304345018|gb|EFM10854.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus
YK9]
Length = 158
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T G K+++EL + +R + + I A YGD+SEN+EY+ AK Q
Sbjct: 1 MGDKEVILTQDGLRKLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I+ + + ++ G+TVS+ + GD +Y IVG E+D +
Sbjct: 61 EGRIITLEKMLRNARIINNDEIDTETVSIGSTVSVEDLEFGDTVDYTIVGTAESDPLNNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +A++GK++G + V+ P G Y+IL++
Sbjct: 121 ISNESPVGKAILGKKVGATVEVSVPAGVIQYKILEI 156
>gi|255994119|ref|ZP_05427254.1| transcription elongation factor GreA [Eubacterium saphenum ATCC
49989]
gi|255993787|gb|EEU03876.1| transcription elongation factor GreA [Eubacterium saphenum ATCC
49989]
Length = 158
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + + +T KG ++ Q+E R + I EA AYGDLSEN+EY AAK Q E
Sbjct: 1 MSETVFLTQKGLEEKQKEYDELVGVRRKEVADRIKEATAYGDLSENSEYDAAKNEQAELE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ LE+++ E+ID + GD + G V L ++ Y+IVG EAD + L+
Sbjct: 61 ERISVLEDMLNNYEIIDSNAAKGDVVDLGLNVHLKNITKKKEETYRIVGSAEADPFNNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155
S SPI + L+ ++G+ +S++ P G+ Y+IL++
Sbjct: 121 SNESPIGKGLLKHKVGETVSIDIPSGKTVKYKILKI 156
>gi|251796519|ref|YP_003011250.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2]
gi|247544145|gb|ACT01164.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2]
Length = 158
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 90/153 (58%), Gaps = 2/153 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++I +T +G K++ EL + +R + + A +YGDL EN+EY +AK+ Q E R
Sbjct: 4 NEIILTPEGLKKLEDELEELKTVKRSELAHRLKVAISYGDLKENSEYHSAKDDQAFMETR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +LE ++ A V + + ++ GA V L + +K Y++VG EADV +S
Sbjct: 64 ITQLEKMLKTARVSN--SKDTTKVGVGAIVVLNDIEVAEKIEYRLVGPAEADVFENKISY 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +AL+GK +GD ISV+AP G YE+L++
Sbjct: 122 ESPMGQALMGKSVGDTISVDAPIGVIKYELLEI 154
>gi|110835318|ref|YP_694177.1| transcription elongation factor GreB [Alcanivorax borkumensis SK2]
gi|110648429|emb|CAL17905.1| transcription elongation factor GreB [Alcanivorax borkumensis SK2]
Length = 171
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 90/152 (59%), Gaps = 3/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T +G+ K+ EL++ +++RP I +++ EA A GD SENAEY K+L+ ++ R+
Sbjct: 15 ITVEGYHKLNDELQYLWKQKRPEITQSVQEAAAQGDRSENAEYIYGKKQLREIDR-RVRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V+D R+ FGA V L E ++GD + Y++VG E D G +SI +P
Sbjct: 74 LSKRLDDMTVVDRVPEDQSRVFFGAWVEL-ENDTGDTETYRLVGPDETDAGRGYISIDAP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ K++ D + V P GE+ I ++ +
Sbjct: 133 LARALLKKQVDDEVEVRTPAGERCLFINRIWY 164
>gi|326793978|ref|YP_004311798.1| transcription elongation factor GreB [Marinomonas mediterranea
MMB-1]
gi|326544742|gb|ADZ89962.1| transcription elongation factor GreB [Marinomonas mediterranea
MMB-1]
Length = 181
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 87/147 (59%), Gaps = 3/147 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T +G DK+ EL++ +E+RP + + +S+A GD SENAEY K+L+ ++ R+
Sbjct: 29 LTKEGADKLLAELKYLWKEKRPAVTQTVSDAAKQGDRSENAEYIYGKKQLREIDR-RVRY 87
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + V+D + RI FGA V+L E G + ++IVG E D S +SI SP
Sbjct: 88 LEKRLDHCTVVDRAPNDVSRIFFGAWVTL-EHEDGKLETFRIVGPDELDHHSDYISIDSP 146
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+A+AL+ KE GD +++ GEK Y I
Sbjct: 147 VAKALLKKEEGDEVTIRRAEGEKLYYI 173
>gi|126701179|ref|YP_001090076.1| transcription elongation factor GreA [Clostridium difficile 630]
gi|254977179|ref|ZP_05273651.1| transcription elongation factor [Clostridium difficile QCD-66c26]
gi|255094509|ref|ZP_05323987.1| transcription elongation factor [Clostridium difficile CIP 107932]
gi|255102765|ref|ZP_05331742.1| transcription elongation factor [Clostridium difficile QCD-63q42]
gi|255308586|ref|ZP_05352757.1| transcription elongation factor [Clostridium difficile ATCC 43255]
gi|255316260|ref|ZP_05357843.1| transcription elongation factor [Clostridium difficile QCD-76w55]
gi|255518921|ref|ZP_05386597.1| transcription elongation factor [Clostridium difficile QCD-97b34]
gi|255652100|ref|ZP_05399002.1| transcription elongation factor [Clostridium difficile QCD-37x79]
gi|255657503|ref|ZP_05402912.1| transcription elongation factor [Clostridium difficile QCD-23m63]
gi|260685073|ref|YP_003216358.1| transcription elongation factor GreA [Clostridium difficile CD196]
gi|260688731|ref|YP_003219865.1| transcription elongation factor GreA [Clostridium difficile R20291]
gi|296452825|ref|ZP_06894512.1| transcription elongation factor GreA [Clostridium difficile NAP08]
gi|296879923|ref|ZP_06903895.1| transcription elongation factor GreA [Clostridium difficile NAP07]
gi|306521834|ref|ZP_07408181.1| transcription elongation factor GreA [Clostridium difficile
QCD-32g58]
gi|123066490|sp|Q181F4|GREA_CLOD6 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|115252616|emb|CAJ70459.1| Transcription elongation factor greA (Transcript cleavage factor
GreA) [Clostridium difficile]
gi|260211236|emb|CBA66757.1| transcription elongation factor grea [Clostridium difficile CD196]
gi|260214748|emb|CBE07439.1| transcription elongation factor grea [Clostridium difficile R20291]
gi|296258373|gb|EFH05281.1| transcription elongation factor GreA [Clostridium difficile NAP08]
gi|296429037|gb|EFH14912.1| transcription elongation factor GreA [Clostridium difficile NAP07]
Length = 159
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 90/149 (60%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK+++EL + +R + + I A ++GDLSENAEY AK+ Q E R+ +L
Sbjct: 9 LTQEGYDKLEEELENLKVVKRKEVAERIKVAISFGDLSENAEYDEAKKEQAQVEERILKL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN++ +A +ID S + + + G+ V + + ++ Y IVG EAD G +S SP+
Sbjct: 69 ENMVRKAVIIDESKIDLNVVTIGSIVKVKDLEFDEEVEYTIVGSTEADPYDGKISNESPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+G+ +++ V P G +EIL++
Sbjct: 129 GKALLGRAAKEVVEVQVPDGVAKFEILEI 157
>gi|310641883|ref|YP_003946641.1| transcription elongation factor [Paenibacillus polymyxa SC2]
gi|309246833|gb|ADO56400.1| Transcription elongation factor [Paenibacillus polymyxa SC2]
Length = 159
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 80/130 (61%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
+R + + + A +YGDL EN+EY +AK+ Q E R+ LE ++T+A ++D S +
Sbjct: 27 KRKELAERLKLAISYGDLKENSEYHSAKDDQAFMETRIMVLEKMLTKARIVDESNLDLKT 86
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
++ G+TV L + +K Y++V EADV +S SP+ +AL+GKE+G II V+AP
Sbjct: 87 VSIGSTVILNDIEFSEKVEYKVVSPAEADVLDNKISYESPLGKALLGKEVGSIIHVDAPM 146
Query: 146 GEKTYEILQV 155
YE+L++
Sbjct: 147 AVIKYELLEI 156
>gi|297588655|ref|ZP_06947298.1| transcription elongation factor GreA [Finegoldia magna ATCC 53516]
gi|297574028|gb|EFH92749.1| transcription elongation factor GreA [Finegoldia magna ATCC 53516]
Length = 159
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 82/147 (55%), Gaps = 1/147 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T +G D+ ++EL + + R I + I AR +GDLSENAEY AK Q
Sbjct: 1 MADKEFLLTQEGLDQHKEELEFLKTTRRTEIAEKIKVARGFGDLSENAEYDEAKNEQAQV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ LEN++ A+VI D + G+TV+ S + Y+IVG E+D +G
Sbjct: 61 EERINYLENLLLYAKVIQDDENQKDVVTVGSTVTYKNLKSNKEMTYKIVGTAESDPFAGR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146
+S SP +AL+ ++GD +V PGG
Sbjct: 121 ISNESPTGKALLNLKVGDTTTVETPGG 147
>gi|205354873|ref|YP_002228674.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205274654|emb|CAR39708.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|326630019|gb|EGE36362.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 157
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 87/150 (58%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ F A V +E + GD ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFSAWVE-IENDDGDTLKFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE + +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPVGEANWYV 150
>gi|300725195|ref|YP_003714523.1| transcription elongation factor and transcript cleavage
[Xenorhabdus nematophila ATCC 19061]
gi|297631740|emb|CBJ92459.1| transcription elongation factor and transcript cleavage
[Xenorhabdus nematophila ATCC 19061]
Length = 165
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ + ERP + +A+SEA A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWHTLDQELKYLWKIERPNVTQAVSEAAALGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V VE G++ +++VG E D +SI SP+
Sbjct: 67 SKRLDILQIVDPDPRQEGKVFFGAWVK-VENEQGEEHIFRLVGPDEFDPAKKWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+GK++ D ++V P G TY I Q+
Sbjct: 126 ARALLGKQVDDEVTVMTPNGMATYWIRQI 154
>gi|117922445|ref|YP_871637.1| transcription elongation factor GreB [Shewanella sp. ANA-3]
gi|117614777|gb|ABK50231.1| transcription elongation factor GreB [Shewanella sp. ANA-3]
Length = 167
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L + R+ L
Sbjct: 6 ITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDSRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S +I FGA L E +G+ Y+IVG E D + G ++I SP+
Sbjct: 66 VKRLEELKIVDYSPQQEGKIYFGAWFEL-ENEAGECVRYRIVGKDELDTKLGYITIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARALIGK++ D + V P G K + I
Sbjct: 125 ARALIGKQVDDEVVVQTPSGPKEWYI 150
>gi|239626631|ref|ZP_04669662.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516777|gb|EEQ56643.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 160
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + T G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKHILTYAGLKQYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ELE ++ AEV+ + D+I G V L++ ++ + IVG EA+
Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKLLDVEYDEEMEFYIVGSTEANSLQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ RALIGK +GD + V G+ Y++L++
Sbjct: 121 ISNESPVGRALIGKVVGDCVEVETQAGDIQYKVLEI 156
>gi|261403947|ref|YP_003240188.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10]
gi|329925508|ref|ZP_08280382.1| transcription elongation factor GreA [Paenibacillus sp. HGF5]
gi|261280410|gb|ACX62381.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10]
gi|328939791|gb|EGG36131.1| transcription elongation factor GreA [Paenibacillus sp. HGF5]
Length = 158
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T G K++ EL + +R + + I A YGD+SEN+EY+ AK Q
Sbjct: 1 MSDKEVILTQDGLKKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I+ ++ D + G TV + + GD Y IVG E+D +
Sbjct: 61 EGRIITLEKMLRNARIINNDDINTDVVGVGNTVIVEDLEFGDTMEYTIVGTAESDPLNNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +A+IGK+ G ++ VN P G Y+I+ +
Sbjct: 121 ISNESPVGKAIIGKQKGSVVDVNVPAGVIQYKIVDI 156
>gi|325261221|ref|ZP_08127959.1| transcription elongation factor GreA [Clostridium sp. D5]
gi|324032675|gb|EGB93952.1| transcription elongation factor GreA [Clostridium sp. D5]
Length = 161
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 87/149 (58%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ EL
Sbjct: 9 LTYAGLKSLEDELENLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+I+ AEV+ + D+I G V + + ++ +++IVG EA+ G +S SP+
Sbjct: 69 ESILKNAEVVVEDEVDFDKINVGCKVKVFDITYDEEMDFKIVGSTEANSLEGKISNESPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+G++ GD++ V G+ Y++L++
Sbjct: 129 GQALMGRKTGDLVEVETQAGQIQYKVLEI 157
>gi|313633191|gb|EFS00071.1| transcription elongation factor GreA [Listeria seeligeri FSL
N1-067]
Length = 133
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 78/129 (60%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
R +++ I AR++GDLSEN+EY +AK+ Q EGR+ +EN A++ID + +
Sbjct: 2 RKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRITTIENXXRNAQIIDAAESHNGLV 61
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
G TV+ VE G+++ Y IVG EAD G +S SPIA+ L+G + G+ +++ P G
Sbjct: 62 TLGNTVTFVELPDGEEETYTIVGSAEADPFEGKISNDSPIAKGLLGHKEGEEVTIQTPAG 121
Query: 147 EKTYEILQV 155
+ +I ++
Sbjct: 122 DMNVKIEKI 130
>gi|293609918|ref|ZP_06692220.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828370|gb|EFF86733.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 164
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125
+ +++D S ++ FGA V +E G++K +IVG D+ D +SI SP
Sbjct: 66 GKRLEELKIVDYSPEQDGKVYFGAWVE-IENEEGEQKTLRIVGIDEIYDHHPQHISIESP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+GKE+ D I V+ P G+K + I
Sbjct: 125 MARALLGKEVDDEIEVHTPSGKKLWYI 151
>gi|146294891|ref|YP_001185315.1| transcription elongation factor GreB [Shewanella putrefaciens
CN-32]
gi|145566581|gb|ABP77516.1| transcription elongation factor GreB [Shewanella putrefaciens
CN-32]
Length = 160
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 88/146 (60%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GFDK+ EL + +E RP I K ++ A + GD SENA+Y+ K L + R+ L
Sbjct: 6 ITREGFDKLNAELNYLWREYRPEITKKVAWAASLGDRSENADYKENKRLLRQIDSRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I ++++ S ++ FGA V +E ++G+ K+++IVG E ++ +SI +P+
Sbjct: 66 RKRIEAVKIVEYSPQQDGKVFFGAWVQ-IENDAGEIKSFRIVGPDEIYGRNDYISIDAPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE+ D + V+ P GE T+ +
Sbjct: 125 ARALLKKEVDDEVVVSTPLGEHTWYV 150
>gi|331091969|ref|ZP_08340801.1| hypothetical protein HMPREF9477_01444 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402868|gb|EGG82435.1| hypothetical protein HMPREF9477_01444 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 160
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + T G K+++EL + +R + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKTILTYAGLKKLEEELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ELE I+ AEV+ + D+I+ G TV++ + ++ ++IVG EA+ G
Sbjct: 61 EARIEELEKILKNAEVVVEDEVDLDKISIGCTVTVYDNEFEEEIEFKIVGSTEANSLEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +ALIG+++ D++ V G Y++L++
Sbjct: 121 ISNESPVGKALIGRKVDDVVEVETQAGVMEYKVLKI 156
>gi|104774331|ref|YP_619311.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|103423412|emb|CAI98285.1| Transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|325126126|gb|ADY85456.1| Transcriptional elongation factor [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 162
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 91/147 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q E R+ +
Sbjct: 8 MTAEGKKQLEEELQTLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRLEERINAI 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A ++D + + D ++ G TV++ E + + Y+IVG ++D G VS SPI
Sbjct: 68 SEQLKYAVIVDTAAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGKVSNESPI 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153
+AL+G + G+ + +N +Y+++
Sbjct: 128 GKALLGHKKGETVKINVDSANVSYDVV 154
>gi|166030714|ref|ZP_02233543.1| hypothetical protein DORFOR_00388 [Dorea formicigenerans ATCC
27755]
gi|166029506|gb|EDR48263.1| hypothetical protein DORFOR_00388 [Dorea formicigenerans ATCC
27755]
Length = 160
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 83/149 (55%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++EL + +R + I EAR GDLSENAEY AAK+ Q E R+ EL
Sbjct: 8 LTYAGLKALEEELENLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + D+I G TV + ++ +++VG EA+ G +S SP+
Sbjct: 68 EAILKNAEVVVEDEVDFDKINVGCTVKAYDITFDEEIEFKLVGSTEANSLEGKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ALIGK +GD++ V G Y++L +
Sbjct: 128 GHALIGKTIGDVVEVETQAGVMQYKVLDI 156
>gi|82702992|ref|YP_412558.1| transcription elongation factor GreB [Nitrosospira multiformis ATCC
25196]
gi|82411057|gb|ABB75166.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC
25196]
Length = 213
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 86/153 (56%), Gaps = 3/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G ++ E W ERP++ +S A A GD SENA+Y K+ + R+ L
Sbjct: 34 ITPEGHKRLMDEFLWLMNRERPQVTATVSWAAANGDRSENADYIYGKKRLREIDRRIRFL 93
Query: 67 ENIITRAEVIDISTMSGD--RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ AE+ID S D RI FGATV+ + + G++K IVG E D G +S S
Sbjct: 94 TRRLDMAEIIDPSMPREDESRIFFGATVTYINE-KGEEKIVSIVGVNEIDTTRGYISWVS 152
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+AR L+ GD+++++APGG + EIL+V +
Sbjct: 153 PLARTLLKAREGDVVTLHAPGGTEELEILEVRY 185
>gi|229846659|ref|ZP_04466767.1| transcription elongation factor GreB [Haemophilus influenzae
7P49H1]
gi|229810752|gb|EEP46470.1| transcription elongation factor GreB [Haemophilus influenzae
7P49H1]
gi|309972280|gb|ADO95481.1| Transcription elongation factor GreB [Haemophilus influenzae R2846]
Length = 162
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 82/140 (58%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++++ QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWNELDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+
Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGEIKQYRIVGCDEFAPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGK L D + V P G
Sbjct: 126 ARALIGKTLDDEVRVETPSG 145
>gi|320160999|ref|YP_004174223.1| transcription elongation factor GreA [Anaerolinea thermophila
UNI-1]
gi|319994852|dbj|BAJ63623.1| transcription elongation factor GreA [Anaerolinea thermophila
UNI-1]
Length = 155
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 89/149 (59%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G ++Q+EL + + R + K + A GDLSENA+Y AKE Q EGR+ EL
Sbjct: 7 LTADGLRRLQEELEYLKGPAREELSKRLRFAIQQGDLSENADYIQAKEEQGFLEGRILEL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I+ +I+ + D + GA V++ E+ + + YQ+VG +EAD + +S SPI
Sbjct: 67 TQILNNYVLIEENNNHKDVVNLGAKVTIQEEGF-EPETYQVVGPKEADPKKNRISHESPI 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ALIG+ +G++++ P G+ T++IL +
Sbjct: 126 GKALIGRGVGEVVTAETPTGKITFKILSI 154
>gi|251811021|ref|ZP_04825494.1| elongation factor GreA [Staphylococcus epidermidis BCM-HMP0060]
gi|293366432|ref|ZP_06613110.1| transcription elongation factor GreA [Staphylococcus epidermidis
M23864:W2(grey)]
gi|251805439|gb|EES58096.1| elongation factor GreA [Staphylococcus epidermidis BCM-HMP0060]
gi|291319466|gb|EFE59834.1| transcription elongation factor GreA [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 161
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 11 PMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S SP
Sbjct: 71 IEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISNESP 129
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155
+A+ALIGK L D + V P GGE +I+++
Sbjct: 130 MAKALIGKGLNDQVRVPLPNGGEMNVKIVEI 160
>gi|323494580|ref|ZP_08099684.1| transcription elongation factor [Vibrio brasiliensis LMG 20546]
gi|323311183|gb|EGA64343.1| transcription elongation factor [Vibrio brasiliensis LMG 20546]
Length = 159
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 92/151 (60%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D++++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYDRLKRELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ + +V+D S ++ FGA V +E +G+ K+++IVG E D + G +SI S
Sbjct: 66 RKRLEQVKVVDYSPQQEGKVFFGAWVE-IENEAGEIKSFRIVGPDEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ KE+ D SV P G K + + Q+
Sbjct: 124 PMARALLKKEVDDEFSVKTPDGYKEWFVNQI 154
>gi|27468211|ref|NP_764848.1| transcription elongation factor [Staphylococcus epidermidis ATCC
12228]
gi|57867085|ref|YP_188750.1| transcription elongation factor GreA [Staphylococcus epidermidis
RP62A]
gi|282875965|ref|ZP_06284832.1| transcription elongation factor GreA [Staphylococcus epidermidis
SK135]
gi|32129576|sp|Q8CSB3|GREA_STAES RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71152091|sp|Q5HNU0|GREA_STAEQ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|27315757|gb|AAO04892.1|AE016748_126 transcription elongation factor [Staphylococcus epidermidis ATCC
12228]
gi|57637743|gb|AAW54531.1| transcription elongation factor GreA [Staphylococcus epidermidis
RP62A]
gi|281294990|gb|EFA87517.1| transcription elongation factor GreA [Staphylococcus epidermidis
SK135]
gi|329724691|gb|EGG61197.1| transcription elongation factor GreA [Staphylococcus epidermidis
VCU144]
gi|329735364|gb|EGG71656.1| transcription elongation factor GreA [Staphylococcus epidermidis
VCU045]
gi|329737227|gb|EGG73481.1| transcription elongation factor GreA [Staphylococcus epidermidis
VCU028]
Length = 158
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 8 PMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S SP
Sbjct: 68 IEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISNESP 126
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155
+A+ALIGK L D + V P GGE +I+++
Sbjct: 127 MAKALIGKGLNDQVRVPLPNGGEMNVKIVEI 157
>gi|163814034|ref|ZP_02205426.1| hypothetical protein COPEUT_00187 [Coprococcus eutactus ATCC 27759]
gi|158450483|gb|EDP27478.1| hypothetical protein COPEUT_00187 [Coprococcus eutactus ATCC 27759]
Length = 165
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 91/144 (63%), Gaps = 1/144 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K +KI+QE+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTQKDIEKIEQEIEYRKCVVRKEKLEAVKEARAQGDLSENFEYYAAKKDKNANERRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ A++I+ ++ S D + TV++ ++ +++ Y++V AD+ GLVS SPI
Sbjct: 65 DRLVRTADIIEDNS-SDDEVGIDNTVTVYFEDDDEEETYRVVTSVRADILEGLVSNVSPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTY 150
+A++G ++GD + V G+ +
Sbjct: 124 GKAILGHKVGDRVQVVPERGDPYF 147
>gi|227499306|ref|ZP_03929418.1| transcription elongation factor [Anaerococcus tetradius ATCC 35098]
gi|227218657|gb|EEI83891.1| transcription elongation factor [Anaerococcus tetradius ATCC 35098]
Length = 157
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 91/143 (63%), Gaps = 2/143 (1%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K++ EL + + ++RP I + I AR++GDLSENA+Y AK Q E R+A++E++I
Sbjct: 14 LEKLEDELEYLKTKKRPEIAEKIKIARSFGDLSENADYDEAKNEQGEIESRIAKVEDMIR 73
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+ I++ S D + G TV++ ++ ++ +Y+IVG E++ G +S SP+ ALI
Sbjct: 74 NAKTIEVKENS-DEVGVGNTVTVYDEEFDEEFDYKIVGTAESNPLEGFISNESPVGAALI 132
Query: 132 GKELGDIISVNAPGGEKTYEILQ 154
GK++ + + V+ P G K Y +++
Sbjct: 133 GKKVNERVEVSTPNG-KMYFVIK 154
>gi|284043142|ref|YP_003393482.1| transcription elongation factor GreA [Conexibacter woesei DSM
14684]
gi|283947363|gb|ADB50107.1| transcription elongation factor GreA [Conexibacter woesei DSM
14684]
Length = 161
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 83/148 (56%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T G K++ EL E+R + I EAR +GD+SENAEY AK Q + E
Sbjct: 1 MPKDVILTPDGLAKLKSELEHLSTEKRREVAARIKEAREFGDISENAEYDDAKNEQAMLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE + A VID ++ D + G++V + + SG Y IVG EA+ +
Sbjct: 61 SKIAQLEEKLRAATVIDSRSVGTDVVGIGSSVQVADSQSGKSDTYVIVGSAEANPAERKL 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK 148
S SP+ +ALIG++ G+ +V P G++
Sbjct: 121 SNESPVGKALIGRKAGETATVQLPNGKQ 148
>gi|328952713|ref|YP_004370047.1| GreA/GreB family elongation factor [Desulfobacca acetoxidans DSM
11109]
gi|328453037|gb|AEB08866.1| GreA/GreB family elongation factor [Desulfobacca acetoxidans DSM
11109]
Length = 159
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 94/154 (61%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+ +T +G+ K+ +EL+ ++ RPRI++ + EA A G L +N +Y A+ Q +
Sbjct: 1 MPKVILTQEGYRKLLRELKHLRRIVRPRILEDVMEAAADGRLEKNDQYWEARSRQVQVDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ L+ II ++EV+ S ++ ++ F V + + + + +V EADV+ G +S
Sbjct: 61 QIHHLQEIIAQSEVLVGSNLTASQVRFNCRVKICNVITQEISIFHLVSSIEADVRQGHLS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
I SP+ +AL+GK++G+ I N PGG + Y++L++
Sbjct: 121 IESPLGQALLGKKVGERIGFNPPGGPRWYQVLEI 154
>gi|295093556|emb|CBK82647.1| transcription elongation factor GreA [Coprococcus sp. ART55/1]
Length = 161
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 83/149 (55%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G KI++EL+ + +R I I EAR GDLSENAEY AAK+ Q E R+ +L
Sbjct: 8 VTYSGLKKIEEELQNLKVNKRREIAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ EV+D + + G V + + +K Y IVG +AD+ + +S SP+
Sbjct: 68 EAMLKNIEVVDEDEVDTGVVGIGCKVVVYDYEFDEKIEYDIVGSSQADIMNNKISDESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL G ++G+ + V AP GE Y +L +
Sbjct: 128 GMALKGAKVGEEVLVEAPDGEFKYRVLDI 156
>gi|291550053|emb|CBL26315.1| transcription elongation factor GreA [Ruminococcus torques L2-14]
Length = 167
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +KIQ E+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTKNDVEKIQAEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKAKNQNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ AE+++ + D I TV L ++ + + Y+IV +GLVSI SPI
Sbjct: 65 ERMLKTAEIVEDHSKE-DEIGLNNTVELYCEDDDEVETYRIVTSVRGSSLNGLVSIESPI 123
Query: 127 ARALIGKELGD--IISVNAPGG 146
+AL+G + G+ I VN G
Sbjct: 124 GKALLGHKEGERVYIKVNDDFG 145
>gi|210618382|ref|ZP_03291947.1| hypothetical protein CLONEX_04180 [Clostridium nexile DSM 1787]
gi|210148938|gb|EEA79947.1| hypothetical protein CLONEX_04180 [Clostridium nexile DSM 1787]
Length = 144
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/140 (40%), Positives = 82/140 (58%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++EL + R + I EAR GDLSENAEY AAK+ Q E R+
Sbjct: 5 KTLLTYAGLKALEEELENLKVVRRKEVAVKIKEAREQGDLSENAEYDAAKDEQRDIEARI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E I+ AEV+ + D+I G TVSL + ++ Y+IVG EA+ +G +S
Sbjct: 65 EEIEKILKNAEVVVEDEVDFDKINVGCTVSLYDVEFEEEVEYKIVGSTEANSLAGKISNE 124
Query: 124 SPIARALIGKELGDIISVNA 143
SP+ +ALIGK++GD + V A
Sbjct: 125 SPLGKALIGKKVGDKVEVEA 144
>gi|299769038|ref|YP_003731064.1| transcription elongation factor GreB [Acinetobacter sp. DR1]
gi|298699126|gb|ADI89691.1| transcription elongation factor GreB [Acinetobacter sp. DR1]
Length = 164
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/147 (38%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125
+ ++ID + ++ FGA V +E G++K +IVG D+ D +SI SP
Sbjct: 66 GKRLEELKIIDYAPEQDGKVYFGAWVE-IENEEGEQKTLRIVGIDEIYDHHPQHISIESP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+GKE+ D I V+ P G+K + I
Sbjct: 125 MARALLGKEVDDEIEVHTPSGKKLWYI 151
>gi|253576833|ref|ZP_04854158.1| transcription elongation factor GreA [Paenibacillus sp. oral taxon
786 str. D14]
gi|251843700|gb|EES71723.1| transcription elongation factor GreA [Paenibacillus sp. oral taxon
786 str. D14]
Length = 158
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T G ++++EL + +R + + I A YGD+SEN+EY+ AK Q
Sbjct: 1 MSDKEVILTQDGLKRLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I+ + D ++ G+ V++ + GD Y IVG E+D
Sbjct: 61 EGRIITLEKMLRNARIINNDEIDTDTVSIGSIVTVEDLEFGDTMEYAIVGTAESDPMQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +A++GK+ G I+ VN P G Y+I+ +
Sbjct: 121 ISNESPVGKAILGKKKGAIVDVNVPAGVIQYKIVDI 156
>gi|89076063|ref|ZP_01162423.1| transcription elongation factor GreB [Photobacterium sp. SKA34]
gi|89048215|gb|EAR53797.1| transcription elongation factor GreB [Photobacterium sp. SKA34]
Length = 160
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 90/149 (60%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G++K+++EL + +E+RP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 VTREGYNKLKKELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +VID S +I FGA V +E +G+ K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLDVLKVIDYSPQQDGKIFFGAWVE-IENEAGETKTFRIVGPDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+ KE+ D I V P G+K + I ++
Sbjct: 125 ARALLSKEVDDDIVVTTPLGKKEWFINEI 153
>gi|70726310|ref|YP_253224.1| transcription elongation factor GreA [Staphylococcus haemolyticus
JCSC1435]
gi|123762316|sp|Q4L6V7|GREA_STAHJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|68447034|dbj|BAE04618.1| transcription elongation factor [Staphylococcus haemolyticus
JCSC1435]
Length = 158
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 97/151 (64%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G++++++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 8 PMTQEGYEQLEKELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E+++ A +I+ T + + G TV+ +E ++++YQIVG EAD +G +S SP
Sbjct: 68 IEHMLRYALIIE-DTGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFNGKISNESP 126
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155
+A+ALIGK L D + V P GGE +I+ +
Sbjct: 127 MAKALIGKSLKDEVRVPLPNGGEINVKIVNI 157
>gi|257791983|ref|YP_003182589.1| transcription elongation factor GreA [Eggerthella lenta DSM 2243]
gi|317489992|ref|ZP_07948484.1| transcription elongation factor GreA [Eggerthella sp. 1_3_56FAA]
gi|325829881|ref|ZP_08163339.1| transcription elongation factor GreA [Eggerthella sp. HGA1]
gi|257475880|gb|ACV56200.1| transcription elongation factor GreA [Eggerthella lenta DSM 2243]
gi|316910990|gb|EFV32607.1| transcription elongation factor GreA [Eggerthella sp. 1_3_56FAA]
gi|325488048|gb|EGC90485.1| transcription elongation factor GreA [Eggerthella sp. HGA1]
Length = 156
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 90/150 (60%), Gaps = 4/150 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G DK+++EL + + E+R I + I AR +GD+SEN+EY AK Q + E R+AE+
Sbjct: 8 LTQEGKDKLEEELHFLETEKRAEIGERIKVAREFGDISENSEYDDAKNEQGMMEARIAEI 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I++ A V++ S + + G+TV++ G ++ + IVG E+D +G +S SP+
Sbjct: 68 SRILSEATVVNTPKRS-NSVHIGSTVTV--DMGGRERVFTIVGGAESDAAAGKISNESPV 124
Query: 127 ARALIGKELGDIISVNAPGGEK-TYEILQV 155
L+G + GD++ P G K T IL++
Sbjct: 125 GSVLLGHKKGDVVETTGPTGRKITMTILKL 154
>gi|145631751|ref|ZP_01787512.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
gi|144982612|gb|EDJ90158.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
Length = 158
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+
Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFSPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGK L D + V P G
Sbjct: 126 ARALIGKTLDDEVRVETPSG 145
>gi|303236653|ref|ZP_07323234.1| transcription elongation factor GreA [Prevotella disiens
FB035-09AN]
gi|302483157|gb|EFL46171.1| transcription elongation factor GreA [Prevotella disiens
FB035-09AN]
Length = 156
Score = 94.0 bits (232), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 89/141 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+D + EL+ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+ E+
Sbjct: 4 MSQEGYDNLVAELQHLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQAHLETRINEM 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I +A+++D+S +S + + +TV + + K Y IV + EA+++ G +SI +PI
Sbjct: 64 KMTIAQAKIVDMSRLSNEAVQIMSTVEMTNLGNNSKMKYTIVSESEANLKLGKISIKTPI 123
Query: 127 ARALIGKELGDIISVNAPGGE 147
A+ L+ K++GD + + P G+
Sbjct: 124 AQGLLNKKVGDEVEIEIPRGK 144
>gi|325479434|gb|EGC82530.1| transcription elongation factor GreA [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 157
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 90/143 (62%), Gaps = 2/143 (1%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K++ EL + + ++RP I + I AR++GDLSENA+Y AK Q E R+A++E++I
Sbjct: 14 LEKLEDELEYLKTKKRPEIAEKIKVARSFGDLSENADYDEAKNEQGEVESRIAKVEDMIR 73
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+ I+++ S D + G TV++ ++ + Y+IVG E++ G +S SP+ ALI
Sbjct: 74 NAKTIEVNENS-DEVGVGNTVTVYDEEFDEDLEYKIVGTAESNPLEGFISNESPVGAALI 132
Query: 132 GKELGDIISVNAPGGEKTYEILQ 154
GK++ + + V+ P G K Y +++
Sbjct: 133 GKKVNERVEVSTPNG-KMYFVIK 154
>gi|291547775|emb|CBL20883.1| transcription elongation factor GreA [Ruminococcus sp. SR1/5]
Length = 161
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 82/149 (55%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ E+
Sbjct: 9 LTYAGLRKLEDELHDLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + DRI+ G V + + + +IVG EA+ G +S SP+
Sbjct: 69 EKILKNAEVVVEDEVDLDRISVGCKVKVHDYEFEEDMELKIVGSTEANSLEGKISNESPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ALIG DI+ V P G Y++L++
Sbjct: 129 GKALIGAHTNDIVEVEMPSGIMKYKVLEI 157
>gi|154504438|ref|ZP_02041176.1| hypothetical protein RUMGNA_01942 [Ruminococcus gnavus ATCC 29149]
gi|153795213|gb|EDN77633.1| hypothetical protein RUMGNA_01942 [Ruminococcus gnavus ATCC 29149]
Length = 167
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 84/143 (58%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T KIQQE+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE R+
Sbjct: 4 KLTQSDVKKIQQEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKEKNRNESRIRY 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE ++ A +++ + D + TV + ++ + + Y+IV +GL+SI SP
Sbjct: 64 LERMLKTAVIVEDHS-GADEVGLNNTVQVYCEDDDELETYRIVTSVRGSSLNGLISIESP 122
Query: 126 IARALIGKELGD--IISVNAPGG 146
I +AL+G ++GD + VN G
Sbjct: 123 IGKALLGHKVGDRVFVKVNDEFG 145
>gi|255657691|ref|ZP_05403100.1| transcription elongation factor GreA [Mitsuokella multacida DSM
20544]
gi|260849878|gb|EEX69885.1| transcription elongation factor GreA [Mitsuokella multacida DSM
20544]
Length = 156
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 92/156 (58%), Gaps = 3/156 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T +G++K+ ++L + + +R I + + A A GDLSEN+EY AK Q
Sbjct: 1 MADKQVMLTEEGYNKLVEKLNYLKSVKRIEIAQRLKAAIALGDLSENSEYDDAKNEQAFL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG + +L I + +I +GD + G+ V++ + GD++ + +VG EAD G
Sbjct: 61 EGEIQDLTAKIRNSHII--KAGAGDVVQMGSKVTVKDIEFGDEETFMLVGSTEADPDEGK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +AL+G++ G +I V+AP G YEIL +
Sbjct: 119 ISNESPLGQALLGQKSGSVIDVHAPAGIIKYEILDI 154
>gi|258513604|ref|YP_003189826.1| transcription elongation factor GreA [Desulfotomaculum acetoxidans
DSM 771]
gi|257777309|gb|ACV61203.1| transcription elongation factor GreA [Desulfotomaculum acetoxidans
DSM 771]
Length = 158
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++EL + R I I +A +GD+SEN+EY+ AK Q EGR+ L
Sbjct: 8 LTVAGLKNLEEELEQLKSVRRREIAARIKQAIEFGDISENSEYEDAKNEQAFIEGRILTL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A++ID + + + G+ V L + GD+ Y IVG EAD + +S SP+
Sbjct: 68 EKMLRNAKIIDDENIDIEAVHIGSKVLLKDLEFGDEFEYTIVGSVEADPGASKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+A++GK G ++ VN P G YEI+ ++
Sbjct: 128 GKAILGKPKGSVVEVNVPAGILKYEIMDII 157
>gi|88861075|ref|ZP_01135710.1| transcription elongation factor GreB [Pseudoalteromonas tunicata
D2]
gi|88817003|gb|EAR26823.1| transcription elongation factor GreB [Pseudoalteromonas tunicata
D2]
Length = 160
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 91/153 (59%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QE + +E+RP + K ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITFEGYNKLKQEHDYLWKEQRPEVTKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISSP 125
I+ +++ S ++ FGA V +E + GD KN +IVG +E S +S+ SP
Sbjct: 66 RKIMPDLKIVYYSPEQEGKVFFGAWVE-IENDDGDIKNLRIVGPEEIYGDSKNYISVDSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALI KE+ D + V P GEKT+ I ++ ++
Sbjct: 125 MARALIKKEVDDEVIVKTPEGEKTWYINKITYV 157
>gi|228475181|ref|ZP_04059907.1| transcription elongation factor GreA [Staphylococcus hominis SK119]
gi|314936274|ref|ZP_07843621.1| transcription elongation factor GreA [Staphylococcus hominis subsp.
hominis C80]
gi|228270792|gb|EEK12194.1| transcription elongation factor GreA [Staphylococcus hominis SK119]
gi|313654893|gb|EFS18638.1| transcription elongation factor GreA [Staphylococcus hominis subsp.
hominis C80]
Length = 158
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 8 PMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E+++ A +I+ + I G TV+ VE ++++YQIVG EAD G +S SP
Sbjct: 68 IEHMLRYALIIE-DNGDNNVIQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISNESP 126
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155
+A+ALIGK L D + V P GGE +I+ +
Sbjct: 127 MAKALIGKNLNDEVRVPLPNGGEMKVKIVDI 157
>gi|26553820|ref|NP_757754.1| transcription elongation factor GreA [Mycoplasma penetrans HF-2]
gi|26453827|dbj|BAC44158.1| transcription elongation factor GreA [Mycoplasma penetrans HF-2]
Length = 161
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 81/134 (60%), Gaps = 3/134 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++++EL++ RP IIK I EAR GDLSENA+Y AAK Q E R+ E+
Sbjct: 8 MTESGKKELEKELKYLIDVRRPEIIKQIQEAREQGDLSENADYDAAKNFQAQIESRIKEI 67
Query: 67 ENIITRAEVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+NI+ ++I SG ++ GATV++ + + G+ Y+IVG E+D +S
Sbjct: 68 QNILNNTKIIKEEKSSGSNEKKVHVGATVTIKDYSDGESHTYKIVGPIESDPSQNKISNE 127
Query: 124 SPIARALIGKELGD 137
P+A+ ++GK++G+
Sbjct: 128 CPLAKCIMGKKVGE 141
>gi|153813031|ref|ZP_01965699.1| hypothetical protein RUMOBE_03439 [Ruminococcus obeum ATCC 29174]
gi|149830833|gb|EDM85923.1| hypothetical protein RUMOBE_03439 [Ruminococcus obeum ATCC 29174]
Length = 160
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ E+
Sbjct: 8 LTYAGLKKLEDELHDLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + D+I G V + + + +IVG EA+ G +S SP+
Sbjct: 68 EKILKNAEVVVEDEVDLDKINVGCKVKVHDYEFDEDMELKIVGSTEANSLEGKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ALIG GD++ V P G Y++L++
Sbjct: 128 GKALIGAHTGDVVDVEMPMGIMKYKVLEI 156
>gi|114565687|ref|YP_752841.1| GreA/GreB family elongation factor [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|122319142|sp|Q0B0N4|GREA_SYNWW RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|114336622|gb|ABI67470.1| GreA/GreB family elongation factor [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 159
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 91/151 (60%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T +G +K++ EL + +R + + I +A A+GD++EN+EY+ AK Q EGR+
Sbjct: 7 VVLTKEGLEKLENELEHLKSVKREEVAERIKQAIAFGDITENSEYEDAKNEQAFIEGRII 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE + +A +++ + D ++ G+ ++L E SG + +V E+ ++ G +S S
Sbjct: 67 SLEKTLKKARLMEDEDIRTDVVSLGSRITLKEMKSGREVTVTLVSSVESKLKDGKISDES 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ +A++GK++ +SV AP G Y+I++V
Sbjct: 127 PVGKAIMGKKVKSTVSVEAPAGTIKYKIIKV 157
>gi|301155419|emb|CBW14885.1| transcription elongation factor [Haemophilus parainfluenzae T3T1]
Length = 158
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V L E G+ K Y++VG E D +SI SP+
Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-EDEEGEVKQYRLVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGE 147
ARALIGK + D I V P G+
Sbjct: 126 ARALIGKGVDDEIHVETPSGK 146
>gi|223044081|ref|ZP_03614120.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Staphylococcus capitis SK14]
gi|314933776|ref|ZP_07841141.1| transcription elongation factor GreA [Staphylococcus caprae C87]
gi|222442475|gb|EEE48581.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Staphylococcus capitis SK14]
gi|313653926|gb|EFS17683.1| transcription elongation factor GreA [Staphylococcus caprae C87]
Length = 158
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G+++++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 8 PMTQEGYEQLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E++I A +I+ + + G TV+ VE ++++YQIVG EAD G +S SP
Sbjct: 68 IEHMIRNALIIE-DNGDNNVVQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISNESP 126
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155
+A ALIGK L D + V P GGE +I+ +
Sbjct: 127 MANALIGKGLNDEVRVPLPNGGEMNVKIVDI 157
>gi|290969240|ref|ZP_06560765.1| transcription elongation factor GreA [Megasphaera genomosp. type_1
str. 28L]
gi|290780746|gb|EFD93349.1| transcription elongation factor GreA [Megasphaera genomosp. type_1
str. 28L]
Length = 161
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 87/151 (57%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL + R + K I EA A GDLSEN+EY AK Q EGR+AEL
Sbjct: 7 ITQEGLQKLKDELNELKSVRRITVSKRIQEAIALGDLSENSEYDDAKNEQAFIEGRIAEL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I A++I + S ++ G+ V L + +G++ +Y +VG EAD + +S SP+
Sbjct: 67 EGKIRTAKIIQAADDSAAKVRLGSHVVLEDVETGERFDYTVVGTAEADPFNNKISNESPV 126
Query: 127 ARALIGKELGD----IISVNAPGGEKTYEIL 153
+A++G+ + +++V AP GE Y IL
Sbjct: 127 GKAILGQLISQQEPVVVTVKAPAGELQYRIL 157
>gi|195940962|ref|ZP_03086344.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4024]
Length = 157
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVE-IENDDGQTLRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ V P GE ++ + ++ ++
Sbjct: 121 DSPMARALLKKEVGDLAVVQTPAGEASWYVNEIEYV 156
>gi|301299802|ref|ZP_07206044.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852615|gb|EFK80257.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 157
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 6/151 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T G+ +I+ E+ + + +RP IK + EARA GDLSENAEY AAK +L++L E R+
Sbjct: 9 MTPNGYKQIEDEIE-QLKLDRPAKIKQLQEARALGDLSENAEYSAAKRDLRHL-ESRLRY 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + AE+I + + D + G TV++ + + D + YQIVG QE +V +S S
Sbjct: 67 LNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDDNKISFVS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PI +A++ K++G +V AP G T +I+ +
Sbjct: 125 PIGKAIMHKKVGHTATVVAPAGSYTVKIISI 155
>gi|325288417|ref|YP_004264598.1| transcription elongation factor GreA [Syntrophobotulus glycolicus
DSM 8271]
gi|324963818|gb|ADY54597.1| transcription elongation factor GreA [Syntrophobotulus glycolicus
DSM 8271]
Length = 156
Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K++ EL + R + + I +A +GD+SEN+EY AK Q EGR+ L
Sbjct: 8 LTLDGLKKLEDELENLKTHRRKEVAERIKQAIEFGDISENSEYDDAKNEQAFIEGRIITL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ A VID D ++ G+TV L + G+ + Y IVG EAD +S SP+
Sbjct: 68 EKILRNARVID-DNEERDFVSLGSTVLLKDIEFGETEEYTIVGSAEADPAGNKISNESPV 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++G+ G ++ VN P G YEI+ +
Sbjct: 127 GKAVLGQAKGSVVEVNVPAGILRYEIMDI 155
>gi|260582727|ref|ZP_05850514.1| transcription elongation factor GreB [Haemophilus influenzae NT127]
gi|260094177|gb|EEW78078.1| transcription elongation factor GreB [Haemophilus influenzae NT127]
Length = 162
Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+
Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFSPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGK L D + V P G
Sbjct: 126 ARALIGKTLDDEVRVETPSG 145
>gi|299144545|ref|ZP_07037624.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298517633|gb|EFI41373.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 158
Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K I T++G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q
Sbjct: 1 MVEKDIFFTAEGLEKIESEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ +LE ++ A+VI + ++ D + G+TV + + + G+++ + IVG EAD G
Sbjct: 61 EERIVKLETMVRNAKVISETDLNTDVVNIGSTVKVKDLSDGEEEEFLIVGSAEADPLEGR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ LIG ++G++ V P G YE++ +
Sbjct: 121 ISNESPVGGKLIGLKIGEVAEVEVPDGIIKYEVVGI 156
>gi|311696372|gb|ADP99245.1| transcription elongation factor GreB [marine bacterium HP15]
Length = 171
Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/144 (39%), Positives = 88/144 (61%), Gaps = 3/144 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T +G ++ EL++ + +RP + +A+ EA A GD SENAEY K+L+ ++ R+
Sbjct: 15 ITPEGERALRDELQYLWKVKRPEVTQAVREAAALGDRSENAEYIYGKKQLREIDR-RVRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V+D D++ FGA V+ VE GD++ Y++VG E D+ G +SI+SP
Sbjct: 74 LGKRLEELTVVDRLPDDRDKVFFGAWVT-VEDEEGDEQTYRLVGADEFDLNKGYLSINSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKT 149
+ARALIGK L D +SV P G K+
Sbjct: 133 LARALIGKRLDDEVSVRTPEGWKS 156
>gi|145640545|ref|ZP_01796129.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
gi|145642261|ref|ZP_01797826.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
gi|145273017|gb|EDK12898.1| transcription elongation factor GreB [Haemophilus influenzae
22.4-21]
gi|145275131|gb|EDK14993.1| transcription elongation factor GreB [Haemophilus influenzae
22.4-21]
Length = 162
Score = 93.6 bits (231), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 81/140 (57%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY +K + R+ L
Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYSKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+
Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFAPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGK L D + V P G
Sbjct: 126 ARALIGKTLDDEVRVETPSG 145
>gi|116514426|ref|YP_813332.1| transcription elongation factor [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|116093741|gb|ABJ58894.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 162
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 90/147 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q E R+ +
Sbjct: 8 MTAEGKKQLEEELQTLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRLEERINAI 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A ++D + D ++ G TV++ E + + Y+IVG ++D G VS SPI
Sbjct: 68 SEQLKYAVIVDTVAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGKVSNESPI 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153
+AL+G + G+ + +N +Y+++
Sbjct: 128 GKALLGHKKGETVKINVDSANVSYDVV 154
>gi|229825233|ref|ZP_04451302.1| hypothetical protein GCWU000182_00585 [Abiotrophia defectiva ATCC
49176]
gi|229790605|gb|EEP26719.1| hypothetical protein GCWU000182_00585 [Abiotrophia defectiva ATCC
49176]
Length = 178
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 85/149 (57%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G ++++EL + R I + I EAR GDLSENAEY AAK+ Q E R+ E+
Sbjct: 28 MTYEGLQELEKELEHLKVNRRREIAEKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 87
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV + G+T +L++ ++ Y++VG EA+ G +S SP+
Sbjct: 88 EKILKNAEVFLEEDAEKGTVNLGSTFTLLDMEYDEEIVYKLVGATEANSLEGKISNESPV 147
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
RAL G + GDI+ V P G Y+++++
Sbjct: 148 GRALKGAKEGDIVEVETPAGTLQYKVIKI 176
>gi|269217202|ref|ZP_06161056.1| transcription elongation factor GreA [Slackia exigua ATCC 700122]
gi|269129339|gb|EEZ60424.1| transcription elongation factor GreA [Slackia exigua ATCC 700122]
Length = 161
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 90/146 (61%), Gaps = 3/146 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++I +T +G K+++EL + + E+R + + I AR +GD+SEN+EY AK Q L E
Sbjct: 7 MANEIVLTPEGKQKLEEELHFLETEKRAEVGERIRVAREFGDISENSEYDDAKNEQGLME 66
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A++ +I++ A +++ S +R+ G+TV++ G ++ + IVG EADV SG +
Sbjct: 67 ARIAQINDILSNAVLVEAPKRS-NRVNIGSTVTV--DMGGRERVFTIVGAAEADVSSGKI 123
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S SP+ AL+G + GD + P G
Sbjct: 124 SNESPVGAALLGGKKGDHFTAEGPTG 149
>gi|89892964|ref|YP_516451.1| hypothetical protein DSY0218 [Desulfitobacterium hafniense Y51]
gi|219666231|ref|YP_002456666.1| transcription elongation factor GreA [Desulfitobacterium hafniense
DCB-2]
gi|89332412|dbj|BAE82007.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219536491|gb|ACL18230.1| transcription elongation factor GreA [Desulfitobacterium hafniense
DCB-2]
Length = 156
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL + +R + + I +A +GD+SEN+EY AK Q EGR+ L
Sbjct: 8 LTIEGLKRLEDELETLKTVKRREVAERIKQAIEFGDISENSEYDDAKNEQAFIEGRIITL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A VID + +A G TV L +K G+++ Y IVG EAD S +S SP+
Sbjct: 68 EKMLRNARVID-DLEGSEVVALGTTVILKDKEFGEEEEYTIVGSAEADPGSNKISNESPV 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++G+ G ++ +N P G YEI+ +
Sbjct: 127 GKAVLGQPKGTVVEINVPAGILYYEIVDI 155
>gi|284046269|ref|YP_003396609.1| transcription elongation factor GreA [Conexibacter woesei DSM
14684]
gi|283950490|gb|ADB53234.1| transcription elongation factor GreA [Conexibacter woesei DSM
14684]
Length = 154
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/155 (38%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D +T +G D ++ EL + R I I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MTDGYAITQEGLDALRAELEQLETVARREIAARIRTAREWGDLKENAEYHAAKEDQAHLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +L A V + S+ D +AFG+TV + + G Y +VG EA + G +
Sbjct: 61 TRILKLRERERNATVTEASS-DVDIVAFGSTVEV--ETGGKNARYTLVGAAEASARDGKL 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SI SP+ARALIG G+ + V P G + +++V
Sbjct: 118 SIESPVARALIGARAGEDVQVQTPSGARILRVVRV 152
>gi|160915319|ref|ZP_02077532.1| hypothetical protein EUBDOL_01328 [Eubacterium dolichum DSM 3991]
gi|158433118|gb|EDP11407.1| hypothetical protein EUBDOL_01328 [Eubacterium dolichum DSM 3991]
Length = 159
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 13/156 (8%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K VT +G D++ +E R +I + EARA GDLSENA+Y AA+E Q E R
Sbjct: 5 EKFLVTKEGLDELVKEHDHLIHVVRDEVIIELQEARAQGDLSENADYDAAREHQAQVEAR 64
Query: 63 MAELENIITRAEVIDISTMSGDR------IAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
+ +LE +I +AE+I+ GD+ + G+TV++++ +S +++ Y IVG EAD
Sbjct: 65 IRDLEAMIAKAEIIE-----GDKKTKKKAVTLGSTVTILDMDSNEEETYTIVGSIEADPL 119
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
+G +S +P+A AL+ + DI+ V+ G E YE+
Sbjct: 120 NGKLSNITPLAVALMDHKTNDIVEVS--GAETPYEV 153
>gi|315286030|gb|EFU45468.1| transcription elongation factor GreB [Escherichia coli MS 110-3]
gi|324014609|gb|EGB83828.1| transcription elongation factor GreB [Escherichia coli MS 60-1]
Length = 154
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 84/142 (59%), Gaps = 2/142 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V +E + G ++IVG E + +SI
Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAP 144
SP+ARAL+ KE+GD+ VN P
Sbjct: 133 DSPMARALLKKEVGDLAVVNTP 154
>gi|90581398|ref|ZP_01237193.1| transcription elongation factor GreB [Vibrio angustum S14]
gi|90437375|gb|EAS62571.1| transcription elongation factor GreB [Vibrio angustum S14]
Length = 160
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 90/149 (60%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G++K+++EL + +E+RP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 VTREGYNKLKKELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +VID S ++ FGA V +E +G+ K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLDVLKVIDYSPQQDGKVFFGAWVE-IENEAGETKTFRIVGPDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+ KE+ D I V P G+K + I ++
Sbjct: 125 ARALLSKEVDDDIVVTTPLGKKEWFINEI 153
>gi|90961105|ref|YP_535021.1| transcription elongation factor GreA [Lactobacillus salivarius
UCC118]
gi|90820299|gb|ABD98938.1| Transcription elongation factor [Lactobacillus salivarius UCC118]
Length = 157
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 6/151 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T G+ +I+ E+ + + +RP IK + EARA GDLSENAEY AAK +L++L E R+
Sbjct: 9 MTPNGYKQIEDEIE-QLKLDRPAKIKQLQEARALGDLSENAEYSAAKRDLRHL-ESRLRY 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + AE+I + + D + G TV++ + + D + YQIVG QE +V +S S
Sbjct: 67 LNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDDNKISFVS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PI +A++ K++G +V AP G T +I+ +
Sbjct: 125 PIGKAIMHKKVGHTATVIAPAGSYTVKIISI 155
>gi|283795848|ref|ZP_06345001.1| transcription elongation factor GreA [Clostridium sp. M62/1]
gi|291076479|gb|EFE13843.1| transcription elongation factor GreA [Clostridium sp. M62/1]
gi|295091062|emb|CBK77169.1| transcription elongation factor GreA [Clostridium cf.
saccharolyticum K10]
Length = 160
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + T G + + EL+ + +R I + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKHILTYTGLKQYEDELQDLKVNKRQEIAQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ +LE ++ AEV+ + ++I G V L++ ++ ++IVG EA+
Sbjct: 61 EARIEQLEKLLKNAEVVVEEEIDLEKINIGCRVKLLDVEEDEEMEFKIVGSTEANSLQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ AL+GK++GD++ V G Y++L++
Sbjct: 121 ISNESPVGHALLGKKVGDVVDVETQAGMIQYKVLEI 156
>gi|325123157|gb|ADY82680.1| transcription elongation factor GreB [Acinetobacter calcoaceticus
PHEA-2]
Length = 164
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ISRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125
+ +++D S ++ FGA V +E G++K +IVG D+ D +SI SP
Sbjct: 66 GKRLEELKIVDYSPEQDGKVYFGAWVE-IENEEGEQKTLRIVGIDEIYDHHPQHISIESP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ARAL+GKE+ D I V+ P G+K + I ++
Sbjct: 125 MARALLGKEVDDEIEVHTPSGKKLWYINKI 154
>gi|16272512|ref|NP_438726.1| transcription elongation factor GreB [Haemophilus influenzae Rd
KW20]
gi|260581015|ref|ZP_05848838.1| transcription elongation factor GreB [Haemophilus influenzae RdAW]
gi|1170017|sp|P43882|GREB_HAEIN RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|1573556|gb|AAC22227.1| transcription elongation factor (greB) [Haemophilus influenzae Rd
KW20]
gi|260092374|gb|EEW76314.1| transcription elongation factor GreB [Haemophilus influenzae RdAW]
Length = 158
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+
Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFAPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGK L D + V P G
Sbjct: 126 ARALIGKTLDDEVRVETPSG 145
>gi|225028128|ref|ZP_03717320.1| hypothetical protein EUBHAL_02398 [Eubacterium hallii DSM 3353]
gi|224954598|gb|EEG35807.1| hypothetical protein EUBHAL_02398 [Eubacterium hallii DSM 3353]
Length = 165
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T + DK++ E+ R+ E RP +++ + EARA+GDLSEN EY AAK+ +N NE R+
Sbjct: 2 KHKLTQQDVDKMKAEIEHRKVEVRPELLEHVKEARAHGDLSENFEYHAAKKEKNRNESRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LE +I E+++ + + D++ TV+L + + + V D VSI
Sbjct: 62 RYLERMIRTCEIVEDHS-NADQVGLNKTVTLYFEEDDETDKFSFVTTVLVDTMQNRVSIE 120
Query: 124 SPIARALIGKELGD--IISVNAPGG 146
SP+ +AL+G + G+ I VNA G
Sbjct: 121 SPLGKALLGHKKGERVYIPVNAQYG 145
>gi|325685811|gb|EGD27883.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 162
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 90/147 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q E R+ +
Sbjct: 8 MTAEGKKQLEEELQNLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRLEERIDAV 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A ++D + D ++ G TV++ E + + Y+IVG ++D G VS SPI
Sbjct: 68 SEQLKYAVIVDTDAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGKVSNESPI 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153
+AL+G + G+ + +N +Y+++
Sbjct: 128 GKALLGHKKGETVKINVDSANVSYDVV 154
>gi|167768162|ref|ZP_02440215.1| hypothetical protein CLOSS21_02718 [Clostridium sp. SS2/1]
gi|317499617|ref|ZP_07957879.1| transcription elongation factor GreA [Lachnospiraceae bacterium
5_1_63FAA]
gi|167709686|gb|EDS20265.1| hypothetical protein CLOSS21_02718 [Clostridium sp. SS2/1]
gi|291560188|emb|CBL38988.1| transcription elongation factor GreA [butyrate-producing bacterium
SSC/2]
gi|316893092|gb|EFV15312.1| transcription elongation factor GreA [Lachnospiraceae bacterium
5_1_63FAA]
Length = 159
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL+ + R I + I EAR GDLSENAEY AAK+ Q E R+ E+
Sbjct: 9 LTPDGLKALEDELQELKVVRRKEIAQKIKEAREQGDLSENAEYDAAKDEQRDMEARIEEI 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ A VID G I+ G V L + G + Y IVG EAD+ +S +PI
Sbjct: 69 EKILKNAVVIDEKFEKG-VISLGCHVLLEDITLGKEVTYHIVGSTEADILQNKISNEAPI 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
RAL+GK++GD++SV + ++ V
Sbjct: 128 GRALLGKKIGDVVSVEGINQVNDFRVIDV 156
>gi|148263835|ref|YP_001230541.1| transcription elongation factor GreB [Geobacter uraniireducens Rf4]
gi|146397335|gb|ABQ25968.1| transcription elongation factor GreB [Geobacter uraniireducens Rf4]
Length = 170
Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 88/155 (56%), Gaps = 9/155 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T +G ++ EL + + ERPR+ +A+S+A A GD SENAEY K L+ ++
Sbjct: 15 ITPEGAKCLRDELDYLWKVERPRVTQAVSDAAAEGDRSENAEYIYGKKRLREIDR----R 70
Query: 66 LENIITRAEVIDISTMSGDR---IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +I R + + + +R I FGA V L E GD+ Y+IVG E DV G +S+
Sbjct: 71 VRFLIKRLDALTVVNNQPERQGKIFFGAWVRL-ETEDGDEVVYRIVGPDEFDVAKGFISM 129
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ RAL+GK+ GD + V P G T+ +L + +
Sbjct: 130 DSPVGRALLGKQEGDEVVVRRPAGATTFTVLDISY 164
>gi|323497027|ref|ZP_08102050.1| transcription elongation factor [Vibrio sinaloensis DSM 21326]
gi|323317871|gb|EGA70859.1| transcription elongation factor [Vibrio sinaloensis DSM 21326]
Length = 160
Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 89/146 (60%), Gaps = 4/146 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GFD++++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGFDRLKKELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ + +V+D + ++ FGA V +E +G+ K+++IVG E D + G +SI S
Sbjct: 66 RKRLEQVKVVDYAPQQEGKVFFGAWVE-IENEAGEVKSFRIVGPDEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTY 150
P+ARAL+ KE+ D SV P G K +
Sbjct: 124 PMARALLKKEVDDEFSVKTPEGYKEW 149
>gi|210611522|ref|ZP_03288942.1| hypothetical protein CLONEX_01132 [Clostridium nexile DSM 1787]
gi|210151969|gb|EEA82976.1| hypothetical protein CLONEX_01132 [Clostridium nexile DSM 1787]
Length = 194
Score = 93.2 bits (230), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 82/142 (57%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K D ++ E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L
Sbjct: 32 LTQKDIDAMKAEIEYRKVVVRKELLEDVKEARAHGDLSENFEYHAAKKEKNRNESRIRYL 91
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I AEVI + D I V L ++ D + Y+IV + GLVS SPI
Sbjct: 92 ERMIKTAEVISDES-KDDEIGLNKIVELYFEDEDDVETYKIVTTVRGNSLQGLVSTESPI 150
Query: 127 ARALIGKELGDI--ISVNAPGG 146
+AL+G ++GD I +NA G
Sbjct: 151 GKALLGHKVGDKVWIPINANAG 172
>gi|145638522|ref|ZP_01794131.1| transcription elongation factor GreB [Haemophilus influenzae
PittII]
gi|145272117|gb|EDK12025.1| transcription elongation factor GreB [Haemophilus influenzae
PittII]
gi|309750026|gb|ADO80010.1| Transcription elongation factor GreB [Haemophilus influenzae R2866]
Length = 162
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 81/140 (57%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+
Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGEIKQYRIVGCDEFAPPKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGK L D + V+ P G
Sbjct: 126 ARALIGKTLDDEVRVDTPSG 145
>gi|331700830|ref|YP_004397789.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL
B-30929]
gi|329128173|gb|AEB72726.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL
B-30929]
Length = 155
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 85/139 (61%), Gaps = 5/139 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T G+++I+ E+R + RP IK++++ARA GDLSENAEY AAK +L++L E R+
Sbjct: 8 ITKFGYEQIESEIR-ELENSRPAKIKSLADARALGDLSENAEYSAAKRDLRHL-ESRLRF 65
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + A+V S + D + G TV + + Y+IVG E D+ G +SI+SP
Sbjct: 66 LRKQLQYAQVYTPS--NNDTVEVGKTVKFEFLDDHSTETYEIVGTPEVDIDHGKISIASP 123
Query: 126 IARALIGKELGDIISVNAP 144
I AL+ GDI++V+AP
Sbjct: 124 IGSALLNHHSGDIVTVSAP 142
>gi|149917972|ref|ZP_01906466.1| transcription elongation factor GreB [Plesiocystis pacifica SIR-1]
gi|149821238|gb|EDM80642.1| transcription elongation factor GreB [Plesiocystis pacifica SIR-1]
Length = 164
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ K++ EL + ERPR+ ++ A A GD SENAEYQ K + R+ L
Sbjct: 8 ITPFGYAKLKAELEELWKVERPRVTDEVAAAAALGDRSENAEYQYGKRRLREIDRRVRWL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ + G ++ FGA V+ VE +G++K +Q+VG E DV+ G +S++SP
Sbjct: 68 NKRLKELTVVRGAPADG-KVHFGAWVT-VEDEAGEQKRWQLVGSDEFDVKDGKISVNSPF 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
RAL+G+E+GD + V P G+ IL +
Sbjct: 126 GRALLGREVGDDVEVQRPKGDLELVILAI 154
>gi|312898247|ref|ZP_07757638.1| transcription elongation factor GreA [Megasphaera micronuciformis
F0359]
gi|310620744|gb|EFQ04313.1| transcription elongation factor GreA [Megasphaera micronuciformis
F0359]
Length = 161
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 4/157 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T+ G +K+++EL + R + + I EA A GDLSEN+EY AK Q E
Sbjct: 1 MSNETLITADGLEKLKEELNELKSVRRIAVSQRIKEAIALGDLSENSEYDDAKNEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELEN I A++I+ ST ++ G+ V L + + ++ Y +VG EAD + +
Sbjct: 61 GRIVELENKIRTAKIIEESTDDVAKVRLGSKVILEDVETKERFEYTVVGTAEADPFNNRI 120
Query: 121 SISSPIARALIG----KELGDIISVNAPGGEKTYEIL 153
S SP+ A++G KE I+SV AP GE Y+IL
Sbjct: 121 SNESPVGAAILGQNVDKENPVIVSVKAPAGEVQYKIL 157
>gi|229845698|ref|ZP_04465821.1| transcription elongation factor GreB [Haemophilus influenzae
6P18H1]
gi|229811384|gb|EEP47090.1| transcription elongation factor GreB [Haemophilus influenzae
6P18H1]
Length = 162
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+
Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFAPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGK L D + V P G
Sbjct: 126 ARALIGKTLDDEVRVETPSG 145
>gi|145633475|ref|ZP_01789204.1| transcription elongation factor GreB [Haemophilus influenzae 3655]
gi|144985844|gb|EDJ92452.1| transcription elongation factor GreB [Haemophilus influenzae 3655]
Length = 168
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+
Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFAPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGK L D + V P G
Sbjct: 126 ARALIGKTLDDEVRVETPSG 145
>gi|116328972|ref|YP_798692.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Leptospira borgpetersenii serovar Hardjo-bovis
L550]
gi|116121716|gb|ABJ79759.1| greA transcription elongation factor-related protein [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
Length = 927
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 91/160 (56%), Gaps = 5/160 (3%)
Query: 1 MVDKIP-----VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKEL 55
++++IP VT + ++ ++E E P K I EA+ GDL ENAEY+AA E
Sbjct: 758 ILNRIPEGAILVTRRALNRKKEEFEHLLNVEMPENSKDIGEAQERGDLRENAEYKAAMER 817
Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
Q + + LE I A ++D++ + D+I G T L +++G+ Y I+G +AD
Sbjct: 818 QVQLQAAIKRLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADT 877
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ ++S SP+A++L+GK++GD +N G E Y +L++
Sbjct: 878 EKHIISYQSPLAKSLLGKKVGDAAVLNLTGAETRYTVLEI 917
>gi|116330420|ref|YP_800138.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
gi|116124109|gb|ABJ75380.1| greA transcription elongation factor-related protein [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
Length = 927
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 91/160 (56%), Gaps = 5/160 (3%)
Query: 1 MVDKIP-----VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKEL 55
++++IP VT + ++ ++E E P K I EA+ GDL ENAEY+AA E
Sbjct: 758 ILNRIPEGAILVTRRALNRKKEEFEHLLNVEMPENSKDIGEAQERGDLRENAEYKAAMER 817
Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
Q + + LE I A ++D++ + D+I G T L +++G+ Y I+G +AD
Sbjct: 818 QVQLQAAIKRLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADT 877
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ ++S SP+A++L+GK++GD +N G E Y +L++
Sbjct: 878 EKHIISYQSPLAKSLLGKKVGDAAVLNLTGAETRYTVLEI 917
>gi|86159099|ref|YP_465884.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775610|gb|ABC82447.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-C]
Length = 163
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T +GF ++ E E+RPRI+ + A A GD SENAEY K+L+ L+ R+
Sbjct: 8 ITPEGFRRLAAEHTRIWTEQRPRIVAEVEAAAALGDRSENAEYIYGKKKLRELDR-RLRF 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V++ R FGA V+ VE+ G ++ Y++VG E DV +GL+S+ +P
Sbjct: 67 LSEKMDSLSVVEPRAHPDGRAFFGAWVT-VEQEDGQERRYRLVGPDEFDVSAGLISVDAP 125
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ RAL+GK GD++ V+ P G + +++V W
Sbjct: 126 LGRALLGKREGDVVVVHRPAGMVEFTVVEVSW 157
>gi|145628952|ref|ZP_01784752.1| transcription elongation factor GreB [Haemophilus influenzae
22.1-21]
gi|144979422|gb|EDJ89108.1| transcription elongation factor GreB [Haemophilus influenzae
22.1-21]
Length = 156
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+
Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFAPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGK L D + V P G
Sbjct: 126 ARALIGKTLDDEVRVETPSG 145
>gi|300214037|gb|ADJ78453.1| Transcription elongation factor [Lactobacillus salivarius CECT
5713]
Length = 157
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 92/151 (60%), Gaps = 6/151 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T G+ +I+ E+ + + +RP IK + EARA GDLSENAEY AAK +L++L E R+
Sbjct: 9 MTPNGYKQIEDEIE-QLKLDRPAKIKQLQEARALGDLSENAEYSAAKRDLRHL-ESRLRY 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + AE+I + + D + G TV++ + + D + YQIVG QE +V +S S
Sbjct: 67 LNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDDNKISFVS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PI +A++ K++G +V AP G T +I+ +
Sbjct: 125 PIGKAIMHKKVGHTATVVAPTGSYTVKIISI 155
>gi|227892405|ref|ZP_04010210.1| transcription elongation factor GreA [Lactobacillus salivarius ATCC
11741]
gi|227865812|gb|EEJ73233.1| transcription elongation factor GreA [Lactobacillus salivarius ATCC
11741]
Length = 157
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 6/151 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T G+ +I+ E+ + + +RP IK + EARA GDLSENAEY AAK +L++L E R+
Sbjct: 9 MTPNGYKQIEDEIE-QLKLDRPAKIKQLQEARALGDLSENAEYSAAKRDLRHL-ESRLRY 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + AE+I + + D + G TV++ + + D + YQIVG QE +V +S S
Sbjct: 67 LNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDDNKISFVS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PI +A++ K++G ++ AP G T +I+ +
Sbjct: 125 PIGKAIMHKKVGHTATIVAPAGSYTVKIISI 155
>gi|315129891|gb|EFT85881.1| elongation factor GreA [Staphylococcus aureus subsp. aureus CGS03]
Length = 158
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 96/151 (63%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +GF+K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 8 PMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E+++ A +I+ T + + G TV+ VE ++++YQIVG E+D +G +S SP
Sbjct: 68 IEHMLRNALIIE-DTGDNNVVKIGKTVTFVELPGDEEESYQIVGSAESDAFNGKISNESP 126
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155
+A+ALI K L D + V P GGE +I+ +
Sbjct: 127 MAKALIDKGLDDEVRVPLPNGGEMNVKIVNI 157
>gi|70731632|ref|YP_261373.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5]
gi|68345931|gb|AAY93537.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5]
Length = 157
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+D ++QEL + +E+RP I + ++ A + GD SENA+YQ K+L + R+ +
Sbjct: 6 ITQDGYDALKQELDYLWREKRPDITQKVTWAASLGDRSENADYQYNKKLLREIDRRVRYI 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ + R+ FGA V VE + + K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDMKVVSYAPEQEGRVFFGAWVE-VENEAAEIKRFRIVGYDEIYLRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+ KE+GD V+ P GE + I Q+
Sbjct: 125 ARALLKKEVGDEAVVHTPAGETCWWINQI 153
>gi|260774750|ref|ZP_05883653.1| transcription elongation factor GreB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260609312|gb|EEX35464.1| transcription elongation factor GreB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 158
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/154 (35%), Positives = 91/154 (59%), Gaps = 6/154 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GFD++++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGFDRLKKELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG---LVSIS 123
+ + +V+D + ++ FGA V VE +G+ K ++IVG E + G +SI
Sbjct: 66 RKRLEQVKVVDYAPQQEGKVFFGAWVE-VENEAGEVKKFRIVGPDE--IYGGAKDYISID 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ KE+ D SV P GEK + + + +
Sbjct: 123 SPMARALLKKEVDDEFSVKTPEGEKEWFVNSICY 156
>gi|160939909|ref|ZP_02087256.1| hypothetical protein CLOBOL_04800 [Clostridium bolteae ATCC
BAA-613]
gi|158437343|gb|EDP15108.1| hypothetical protein CLOBOL_04800 [Clostridium bolteae ATCC
BAA-613]
Length = 160
Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + T G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKHILTYAGLKQYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ELE ++ AEV+ + D+I G V L++ ++ + IVG EA+
Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKLLDVEYDEEMEFYIVGSTEANSLQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ RALIGK +G+ + V G+ Y++L++
Sbjct: 121 ISNESPVGRALIGKVVGECVDVETQAGDIQYKVLEI 156
>gi|300987223|ref|ZP_07178060.1| transcription elongation factor GreB [Escherichia coli MS 200-1]
gi|300306258|gb|EFJ60778.1| transcription elongation factor GreB [Escherichia coli MS 200-1]
Length = 170
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 82/138 (59%), Gaps = 1/138 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 18 VTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 77
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V +E + G ++IVG E + +SI SP+
Sbjct: 78 TKCMENLKIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISIDSPM 136
Query: 127 ARALIGKELGDIISVNAP 144
ARAL+ KE+GD+ VN P
Sbjct: 137 ARALLKKEVGDLAVVNNP 154
>gi|156972942|ref|YP_001443849.1| transcription elongation factor [Vibrio harveyi ATCC BAA-1116]
gi|156524536|gb|ABU69622.1| hypothetical protein VIBHAR_00620 [Vibrio harveyi ATCC BAA-1116]
Length = 161
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+++++ EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYNRLKTELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ + +V+D S ++ FGA V +E +GD KN++IVG E D + G +SI S
Sbjct: 66 RKRLEQVKVVDYSPKQEGKVFFGAWVE-IENEAGDVKNFRIVGPDEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ KE+ D +V P G K + I
Sbjct: 124 PMARALLKKEVDDEFAVRTPEGYKEWFI 151
>gi|251794119|ref|YP_003008850.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2]
gi|247541745|gb|ACS98763.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2]
Length = 158
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK I +T G K+++EL + +R + + I A YGD+SEN+EY+ AK Q
Sbjct: 1 MSDKEIILTQDGLKKLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I+ + D ++ G+ V++ + GD Y IVG E+D
Sbjct: 61 EGRIITLEKMLRNARIINNDEIDTDTVSIGSVVTVEDLEFGDTMEYAIVGSAESDPLRNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +A++GK+ G ++ V+ P G Y+I+ +
Sbjct: 121 ISNESPVGKAILGKKRGTVVDVSVPAGIIQYKIVDI 156
>gi|37524231|ref|NP_927575.1| transcription elongation factor GreB [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36783654|emb|CAE12506.1| Transcription elongation factor (transcript cleavage factor)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 157
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 86/151 (56%), Gaps = 8/151 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYNKLKEELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +D S R+ FGA V +E + G+ K ++IVG E + +SI SP+
Sbjct: 66 TKSLEELRCVDYSPQQDGRVFFGAWVE-IENDQGEIKRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ KE+GD V+ P G +VLW
Sbjct: 125 ARALLKKEVGDSAIVHTPTG-------KVLW 148
>gi|326792442|ref|YP_004310263.1| transcription elongation factor GreA [Clostridium lentocellum DSM
5427]
gi|326543206|gb|ADZ85065.1| transcription elongation factor GreA [Clostridium lentocellum DSM
5427]
Length = 158
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 86/151 (56%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T +G K++ EL + R + + + EARA GDLSENAEY AAKE Q E R+
Sbjct: 6 VLLTYEGIKKLEAELENLKTTRRNDVAEKLKEARAQGDLSENAEYDAAKEEQAEIEVRIV 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELE ++ A VI+ + + + G TV L + ++ +Y IVG EAD +G +S S
Sbjct: 66 ELETMLKNAVVIEAEEGAVEIVKPGYTVRLYDHTFEEEVDYLIVGSTEADPVNGRISNES 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ AL+ + +GDI+ V G YEIL +
Sbjct: 126 PVGAALMNRRVGDIVEVETSEGVDKYEILGI 156
>gi|330808345|ref|YP_004352807.1| GreA-GreB family transcriptional regulator [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327376453|gb|AEA67803.1| putative Transcription factor, GreA-GreB family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 165
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ E RP++ +A+SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGEARMRAEFHELWHVRRPQVTQAVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ +++ FGA V+ VE G + Y+IVG E D++ L+SI SP+
Sbjct: 75 TKRLEALKVVSEKPSDPNKVYFGAWVT-VEDEDGKESRYRIVGPDELDLKQNLISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK L +SV P GEK I+ + +
Sbjct: 134 ARALIGKALDAEVSVQTPTGEKRVYIVDIAY 164
>gi|169335600|ref|ZP_02862793.1| hypothetical protein ANASTE_02015 [Anaerofustis stercorihominis DSM
17244]
gi|169258338|gb|EDS72304.1| hypothetical protein ANASTE_02015 [Anaerofustis stercorihominis DSM
17244]
Length = 157
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + ++ KG+ +++++L + + +R + I AR +GDLSENAEY AK+ Q
Sbjct: 1 MADKEVILSKKGYKELEEKLNYLKDVKRHEVASKIKAAREFGDLSENAEYDEAKQEQGFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG + E+E + A + D + + ++ G+ V + + + ++ Y IVG +E D+ +
Sbjct: 61 EGEIREIEYKLKNAVIFDDANKASGVVSLGSDVKVYDTDFDEEVVYTIVGSEEVDLDNNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPI AL+GK++G+I V P G +IL+V
Sbjct: 121 ISNESPIGSALLGKKVGEIAKVQVPDGIVDLKILEV 156
>gi|238917593|ref|YP_002931110.1| transcription elongation factor GreA [Eubacterium eligens ATCC
27750]
gi|238872953|gb|ACR72663.1| transcription elongation factor GreA [Eubacterium eligens ATCC
27750]
Length = 158
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 84/155 (54%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K +T KG+D+ L + R + + + EAR GDLSENAEY AAK+ Q E
Sbjct: 1 MAEKQFLTKKGYDERVARLEELKVVRRKEVAQKLKEAREQGDLSENAEYDAAKDEQRDIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+AELE I+ EVI + + D + + V L + + Y IVG EAD + +
Sbjct: 61 TEIAELEAILANCEVIQDNDKNKDVVKMESVVVLHDVEIDEDIEYTIVGSSEADSLNNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ ALIGK+ GD + V AP GE Y ++ V
Sbjct: 121 SNESPLGAALIGKKKGDTVKVEAPVGEIEYTVVSV 155
>gi|302189947|ref|ZP_07266620.1| transcription elongation factor GreB [Pseudomonas syringae pv.
syringae 642]
Length = 157
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 84/144 (58%), Gaps = 1/144 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRDGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTY 150
ARAL+ KE+GD + VN P GEK +
Sbjct: 125 ARALLKKEVGDEVLVNTPEGEKLW 148
>gi|254241524|ref|ZP_04934846.1| transcription elongation factor GreB [Pseudomonas aeruginosa 2192]
gi|126194902|gb|EAZ58965.1| transcription elongation factor GreB [Pseudomonas aeruginosa 2192]
Length = 168
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL P++ +A+SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGAARLRAELHELWHVRCPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ +R+ FGA V+L E G++ Y+IVG E D+++ +SI SP+
Sbjct: 75 RKRLENLKVVGERPADPNRVYFGAWVTL-EDEDGEQARYRIVGPDELDLRNNQISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+GKEL + V P GEK + ++++
Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEI 162
>gi|253987638|ref|YP_003038994.1| transcription elongation factor GreB [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253779088|emb|CAQ82248.1| transcription elongation factor greb (transcript cleavage facto
greb) [Photorhabdus asymbiotica]
Length = 157
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYNKLKKELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +D S ++ FGA V +E G+ K ++IVG E + +SI SP+
Sbjct: 66 TKSLEELRCVDYSPQQDGKVFFGAWVE-IENAQGEIKRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD + V+ P GE + + ++ ++
Sbjct: 125 ARALLKKEVGDSVIVHTPTGEVMWYVNEIEYV 156
>gi|300813174|ref|ZP_07093548.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|313124166|ref|YP_004034425.1| transcription elongation factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|300495832|gb|EFK30980.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|312280729|gb|ADQ61448.1| Transcription elongation factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 162
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 90/147 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q E R+ +
Sbjct: 8 MTAEGKKQLEEELQNLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRLEERIDAV 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A ++D + D ++ G TV++ E + + Y+IVG ++D G +S SPI
Sbjct: 68 SEQLKYAVIVDTDAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGKISNESPI 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153
+AL+G + G+ + +N +Y+++
Sbjct: 128 GKALLGHKKGETVKINVDSANVSYDVV 154
>gi|66045305|ref|YP_235146.1| transcription elongation factor GreB [Pseudomonas syringae pv.
syringae B728a]
gi|63256012|gb|AAY37108.1| Prokaryotic transcription elongation factor GreB [Pseudomonas
syringae pv. syringae B728a]
gi|330899247|gb|EGH30666.1| transcription elongation factor GreB [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330944671|gb|EGH46613.1| transcription elongation factor GreB [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330973780|gb|EGH73846.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aceris str. M302273PT]
gi|330977558|gb|EGH77502.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 157
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 84/144 (58%), Gaps = 1/144 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRDGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTY 150
ARAL+ KE+GD + VN P GEK +
Sbjct: 125 ARALLKKEVGDEVLVNTPEGEKLW 148
>gi|254428022|ref|ZP_05041729.1| transcription elongation factor GreB [Alcanivorax sp. DG881]
gi|196194191|gb|EDX89150.1| transcription elongation factor GreB [Alcanivorax sp. DG881]
Length = 165
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T +G+ K+ EL++ +E+RP + +A+ EA A GD SENAEY K+L+ ++ R+
Sbjct: 15 ITVEGYHKLNDELQYLWKEKRPVVTQAVQEAAAQGDRSENAEYIYGKKQLREIDR-RVRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V+D RI FGA V L E G + Y++VG E D G +SI +P
Sbjct: 74 LSKRLDDMTVVDRVPEDQSRIFFGAWVEL-ETEDGGTETYRLVGPDETDAGRGYISIDAP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ K++ D ++V P GE+ I ++ +
Sbjct: 133 LARALLKKQVDDEVAVRTPAGERCLFINRIWY 164
>gi|227529977|ref|ZP_03960026.1| transcription elongation factor GreA [Lactobacillus vaginalis ATCC
49540]
gi|227350100|gb|EEJ40391.1| transcription elongation factor GreA [Lactobacillus vaginalis ATCC
49540]
Length = 172
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 88/147 (59%), Gaps = 7/147 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T G+ +I+QE+ + Q +RP I + ARA GDLSEN EY AK EL++L E R+
Sbjct: 18 MTPTGYHEIEQEIE-KLQAQRPAKIAQLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 75
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + AE+I + I G TV+L + ++ NY IVG QEAD+Q +S SP
Sbjct: 76 LNKQLQYAEIIKPT--DSQTIDLGTTVTLQFIDDDEQVNYTIVGKQEADLQKQKISFDSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ +AL+ +++G +SV AP + TY++
Sbjct: 134 LGQALLHQKVGQTVSVQAP--QSTYQV 158
>gi|269959400|ref|ZP_06173783.1| Transcription elongation factor greB [Vibrio harveyi 1DA3]
gi|269835837|gb|EEZ89913.1| Transcription elongation factor greB [Vibrio harveyi 1DA3]
Length = 161
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 88/146 (60%), Gaps = 4/146 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+++++ EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYNRLKTELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ + +V+D S ++ FGA V +E +GD KN++IVG E D + G +SI S
Sbjct: 66 RKRLEQVKVVDYSPQQEGKVFFGAWVE-IENEAGDVKNFRIVGPDEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTY 150
P+ARAL+ KE+ D +V P G K +
Sbjct: 124 PMARALLKKEVDDEFAVRTPEGYKEW 149
>gi|262273560|ref|ZP_06051374.1| transcription elongation factor GreB [Grimontia hollisae CIP
101886]
gi|262222538|gb|EEY73849.1| transcription elongation factor GreB [Grimontia hollisae CIP
101886]
Length = 161
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G++K++QEL + E RP I K +S A + GD SENA+Y K L + R+ L
Sbjct: 7 VTREGYNKLKQELDYLWNERRPEITKIVSWAASLGDRSENADYTYNKRLLREIDRRVRYL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ VID S ++ FGA V VE + GD +++IVG E + +SI SP+
Sbjct: 67 RKRLEVLRVIDYSPQQDGKVFFGAWVD-VENDDGDTLSFRIVGPDEIYGRKDYISIDSPM 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALI KE+ D V P G K + + ++
Sbjct: 126 ARALIKKEVDDEAVVATPEGPKVWYVNRI 154
>gi|146282377|ref|YP_001172530.1| transcription elongation factor GreB [Pseudomonas stutzeri A1501]
gi|145570582|gb|ABP79688.1| transcription elongation factor GreB [Pseudomonas stutzeri A1501]
Length = 172
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 87/149 (58%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L
Sbjct: 22 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 81
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ +++ FGA V+L E G++ Y+IVG E D++ G++SI SP+
Sbjct: 82 TKRLEKLKVVRERPSDPNKVYFGAWVTL-EDEDGEQARYRIVGPDELDLRQGMISIDSPL 140
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+GK L + V P G K + ++ +
Sbjct: 141 ARALVGKALDAEVQVQTPTGTKLWYVVAI 169
>gi|218506771|ref|ZP_03504649.1| transcription elongation factor GreA [Rhizobium etli Brasil 5]
Length = 60
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 50/57 (87%)
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++K YQIVGDQEADV++G +SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 3 EEKTYQIVGDQEADVKAGRISISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 59
>gi|148827761|ref|YP_001292514.1| transcription elongation factor GreB [Haemophilus influenzae
PittGG]
gi|148719003|gb|ABR00131.1| transcription elongation factor GreB [Haemophilus influenzae
PittGG]
Length = 158
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+
Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGEIKQYRIVGCDEFAPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGK L D + V P G
Sbjct: 126 ARALIGKTLDDEVRVETPSG 145
>gi|242373910|ref|ZP_04819484.1| elongation factor GreA [Staphylococcus epidermidis M23864:W1]
gi|242348464|gb|EES40066.1| elongation factor GreA [Staphylococcus epidermidis M23864:W1]
Length = 158
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 94/151 (62%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G+++++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 8 PMTQEGYEQLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S SP
Sbjct: 68 IEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISNESP 126
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155
+A ALIGK L D + V P GGE +I+ +
Sbjct: 127 MANALIGKGLNDEVRVPLPNGGEINVKIVDI 157
>gi|291563891|emb|CBL42707.1| transcription elongation factor GreA [butyrate-producing bacterium
SS3/4]
Length = 160
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + T G K + EL+ + R I + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKHILTYAGLKKYEDELQDLKVNRRREIAQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ELE ++ AEV+ ++ D+I G V + + + ++ +++VG EA+
Sbjct: 61 ELRIEELEKLLKNAEVVVEDEVNLDKINVGCIVKVYDVDFDEEMEFKLVGSTEANSLENK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ ALIGK +GD++ V G Y++L +
Sbjct: 121 ISNESPVGHALIGKRVGDVVDVETQSGVIQYKVLDI 156
>gi|242242884|ref|ZP_04797329.1| elongation factor GreA [Staphylococcus epidermidis W23144]
gi|242233659|gb|EES35971.1| elongation factor GreA [Staphylococcus epidermidis W23144]
Length = 161
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 11 PMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S SP
Sbjct: 71 IEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISNESP 129
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155
+A ALIGK L D + V P GGE +I+++
Sbjct: 130 MAIALIGKGLNDQVRVPLPNGGEMNVKIVEI 160
>gi|319795595|ref|YP_004157235.1| transcription elongation factor greb [Variovorax paradoxus EPS]
gi|315598058|gb|ADU39124.1| transcription elongation factor GreB [Variovorax paradoxus EPS]
Length = 192
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +++ EL EERP++++A+ A GD SEN +Y K+ + R+ L
Sbjct: 33 ITPEGYARLRDELLQLMDEERPKVVEAVHWAAKNGDRSENGDYLYGKKRLREIDRRIRFL 92
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV D S G D+I FGATV V++ D++ I+G EAD VS SP
Sbjct: 93 TKRLEIAEVTDPSVHHGSDQIFFGATVRYVDETGDDERTITILGIDEADSAQSQVSWISP 152
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ GD++ + PGG EIL V +
Sbjct: 153 IARALLKSREGDVVKLVTPGGAHEVEILSVSY 184
>gi|261250558|ref|ZP_05943133.1| transcription elongation factor GreB [Vibrio orientalis CIP 102891]
gi|260939127|gb|EEX95114.1| transcription elongation factor GreB [Vibrio orientalis CIP 102891]
Length = 158
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 4/146 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D++++EL + +E+RP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYDRLKKELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ + +V+D S ++ FGA V +E GD K ++IVG E D + G +SI S
Sbjct: 66 RKRLEQVKVVDYSPQQEGKVFFGAWVE-IENEDGDTKAFRIVGPDEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTY 150
P+ARAL+ KE+ D SV P G K +
Sbjct: 124 PMARALLKKEVDDEFSVKTPEGFKEW 149
>gi|163815694|ref|ZP_02207066.1| hypothetical protein COPEUT_01875 [Coprococcus eutactus ATCC 27759]
gi|158448999|gb|EDP25994.1| hypothetical protein COPEUT_01875 [Coprococcus eutactus ATCC 27759]
Length = 161
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 83/149 (55%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G KI++EL+ + +R I I EAR GDLSENAEY AAK+ Q E R+ +L
Sbjct: 8 VTYSGLKKIEEELQDLKVNKRREIAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ EV+D + + G V + + ++ Y IVG +AD+ + +S SP+
Sbjct: 68 EAMLKNIEVVDEDEVDTGVVGIGCKVIVYDYEYDEEIEYDIVGSSQADIMNNKISDESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL G ++G+ + V AP GE Y +L +
Sbjct: 128 GMALKGAKVGEEVLVEAPDGEFKYRVLDI 156
>gi|237797206|ref|ZP_04585667.1| transcription elongation factor GreB [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331020056|gb|EGI00113.1| transcription elongation factor GreB [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 157
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRDGHEALKKELDYLWREHRPDITRKVTWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ S R+ FGA V +E GD K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDMRVVLYSPEQEGRVFFGAWVE-IENEEGDLKKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ KE+GD + VN P GEK + + +++
Sbjct: 125 ARALLKKEVGDEVLVNTPEGEKLWFVNSIVY 155
>gi|293364014|ref|ZP_06610750.1| putative transcription elongation factor GreA [Mycoplasma
alligatoris A21JP2]
gi|292552504|gb|EFF41278.1| putative transcription elongation factor GreA [Mycoplasma
alligatoris A21JP2]
Length = 160
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 2/142 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI + + +K + E ERP + A+ EARA GDLSENAEY AA++ Q EGR
Sbjct: 8 EKIYLAKETLEKYKNEYDHLVNVERPSVQAALKEARAQGDLSENAEYDAARDRQGTIEGR 67
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++ELE I+ RAE+I +T+ G +I G+T++ + +K I+G +A+ +S
Sbjct: 68 ISELEAILDRAEIIS-TTLDG-KIGIGSTITYFSELDKEKHKVTIMGSHDANPFENKISN 125
Query: 123 SSPIARALIGKELGDIISVNAP 144
SP+A A++ + GD I V+AP
Sbjct: 126 ESPLAVAMLDAKKGDKIEVDAP 147
>gi|257066134|ref|YP_003152390.1| transcription elongation factor GreA [Anaerococcus prevotii DSM
20548]
gi|256798014|gb|ACV28669.1| transcription elongation factor GreA [Anaerococcus prevotii DSM
20548]
Length = 157
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K++ EL + + ++RP I + I AR++GDLSENA+Y AK Q E R+A++E++I
Sbjct: 14 LEKLEDELEYLKTKKRPEIAEKIKVARSFGDLSENADYDEAKNEQGEVESRIAKVEDMIR 73
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+ I++ S D + G TV++ ++ + Y+IVG E++ G +S SP+ ALI
Sbjct: 74 NAKTIEVIENS-DEVGVGNTVTVYDEEFDEDLEYKIVGTAESNPLEGFISNESPVGAALI 132
Query: 132 GKELGDIISVNAPGGEKTYEILQ 154
GK++ + + V+ P G K Y +++
Sbjct: 133 GKKVDERVEVSTPNG-KMYFVIK 154
>gi|227498561|ref|ZP_03928705.1| GreA/GreB family elongation factor [Acidaminococcus sp. D21]
gi|226904017|gb|EEH89935.1| GreA/GreB family elongation factor [Acidaminococcus sp. D21]
Length = 173
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 93/151 (61%), Gaps = 2/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL + + E+R ++ + + A +YGD+SEN+EY AK Q EGR+ L
Sbjct: 8 LTEEGLKKLEDELDYLRSEKRQQVAERLKVAISYGDISENSEYDDAKNEQAFVEGRILTL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS--S 124
E +I A+VI S ++ ++ G+ V++ + + +++ Y +VG EAD + IS S
Sbjct: 68 EKMIRNAKVIKDSEINKKVVSLGSQVTIKDMETEEEEEYTVVGTTEADPMADPPRISNES 127
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ +A++G+++G + V P GE +Y+I+ +
Sbjct: 128 PVGKAILGQKVGSVCKVPTPAGELSYKIVSI 158
>gi|319400941|gb|EFV89160.1| transcription elongation factor greA [Staphylococcus epidermidis
FRI909]
Length = 158
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/151 (39%), Positives = 95/151 (62%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E +
Sbjct: 8 PMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQDIQR 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S SP
Sbjct: 68 IEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISNESP 126
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQV 155
+A ALIGK L D + V P GGE +I+++
Sbjct: 127 MAIALIGKGLNDQVRVPLPNGGEMNVKIVEI 157
>gi|145635344|ref|ZP_01791046.1| transcription elongation factor GreB [Haemophilus influenzae
PittAA]
gi|145637929|ref|ZP_01793571.1| transcription elongation factor GreB [Haemophilus influenzae
PittHH]
gi|145267350|gb|EDK07352.1| transcription elongation factor GreB [Haemophilus influenzae
PittAA]
gi|145268869|gb|EDK08830.1| transcription elongation factor GreB [Haemophilus influenzae
PittHH]
Length = 162
Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+
Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGEIKQYRIVGCDEFAPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGK L D + V P G
Sbjct: 126 ARALIGKTLDDEVRVETPSG 145
>gi|68249169|ref|YP_248281.1| transcription elongation factor GreB [Haemophilus influenzae
86-028NP]
gi|148825152|ref|YP_001289905.1| transcription elongation factor GreB [Haemophilus influenzae
PittEE]
gi|68057368|gb|AAX87621.1| transcription elongation factor GreB [Haemophilus influenzae
86-028NP]
gi|148715312|gb|ABQ97522.1| transcription elongation factor GreB [Haemophilus influenzae
PittEE]
Length = 158
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWLVLDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+
Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGEIKQYRIVGCDEFAPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGK L D + V P G
Sbjct: 126 ARALIGKTLDDEVRVETPSG 145
>gi|330951745|gb|EGH52005.1| transcription elongation factor GreB [Pseudomonas syringae Cit 7]
Length = 157
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 84/144 (58%), Gaps = 1/144 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRDGHEALKKELDYLGREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTY 150
ARAL+ KE+GD + VN P GEK +
Sbjct: 125 ARALLKKEVGDEVLVNTPEGEKLW 148
>gi|28869465|ref|NP_792084.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213968119|ref|ZP_03396264.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato T1]
gi|301383559|ref|ZP_07231977.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato Max13]
gi|302058446|ref|ZP_07249987.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato K40]
gi|302133441|ref|ZP_07259431.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|37999581|sp|Q883T5|GREB_PSESM RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|28852706|gb|AAO55779.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927099|gb|EEB60649.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato T1]
gi|330875597|gb|EGH09746.1| transcription elongation factor GreB [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|331016245|gb|EGH96301.1| transcription elongation factor GreB [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 157
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 88/151 (58%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITQGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ S R+ FGA V +E +GD K +++VG E ++ +SI SP+
Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRVVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ KE+GD + VN P GEK + + +++
Sbjct: 125 ARALLKKEVGDEVLVNTPEGEKLWFVNSIVY 155
>gi|291166186|gb|EFE28232.1| transcription elongation factor GreA [Filifactor alocis ATCC 35896]
Length = 161
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ KI++EL + + R + + I A ++GD+SENAEY AK Q E R+++L
Sbjct: 13 ITQSGYQKIEEELEYLKATRRLEVAERIKVALSFGDISENAEYDEAKNEQAQLEERISKL 72
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
ENI+ A ++D S + D + G+ V L G+ + Y IVG E+D S +S +PI
Sbjct: 73 ENILRTAVIVDESKLEHDVVNIGSWVKL--DYEGEIEEYTIVGSAESDPSSSKISNEAPI 130
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+G+ G+ I V P G +IL+V
Sbjct: 131 GKALMGRREGESIEVQVPNGVVNIKILEV 159
>gi|289673217|ref|ZP_06494107.1| transcription elongation factor GreB [Pseudomonas syringae pv.
syringae FF5]
Length = 157
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRDGHQALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTY 150
ARAL+ KE+GD + VN P GEK +
Sbjct: 125 ARALLKKEVGDEVLVNTPEGEKLW 148
>gi|167622182|ref|YP_001672476.1| transcription elongation factor GreB [Shewanella halifaxensis
HAW-EB4]
gi|167352204|gb|ABZ74817.1| transcription elongation factor GreB [Shewanella halifaxensis
HAW-EB4]
Length = 159
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +GF+K+Q+EL + +E RP I K +S A + GD SENA+Y K+ + R+ L
Sbjct: 6 VTREGFEKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKKKLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+D S ++ FGA V +E + G+K ++IVG E + +SI SP+
Sbjct: 66 RKTLENVQVVDYSPAQEGKVFFGAWVE-IENDDGNKLQFKIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AR L+ KE+ D + P GE+ + I ++
Sbjct: 125 ARGLLKKEVDDEAVIKTPTGEQVWYINRI 153
>gi|297538751|ref|YP_003674520.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
gi|297258098|gb|ADI29943.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
Length = 168
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 1/150 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G I+ E + ERP ++K +S A GD SEN +Y K + R+ L
Sbjct: 13 ITPEGHAAIEAEFTELLKVERPALVKVVSWAAGNGDRSENGDYIYGKRRLRQIDSRLRFL 72
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A ++D + G +++ FGA V+L + Y+IVG E G +S SP
Sbjct: 73 MQRMDLAVIVDPAAQQGLEKVFFGAWVTLFSLKDDTEHTYRIVGKDELQPSLGYISWVSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ARAL+GK++GDI+ V+ P GE+ YEI+ V
Sbjct: 133 LARALLGKQIGDIVKVSVPAGEEEYEIIDV 162
>gi|266624959|ref|ZP_06117894.1| transcription elongation factor GreA [Clostridium hathewayi DSM
13479]
gi|288863148|gb|EFC95446.1| transcription elongation factor GreA [Clostridium hathewayi DSM
13479]
Length = 160
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + T +G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKNILTYEGLKRYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ELE ++ AEV+ + D+I G V + + + ++ ++IVG EA+
Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKVYDVDEDEEMEFKIVGSTEANSLQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +AL+GK+ GD++ V G Y++L++
Sbjct: 121 ISNESPVGQALMGKKAGDVVDVETQAGVIQYKVLEI 156
>gi|210632436|ref|ZP_03297364.1| hypothetical protein COLSTE_01261 [Collinsella stercoris DSM 13279]
gi|210159531|gb|EEA90502.1| hypothetical protein COLSTE_01261 [Collinsella stercoris DSM 13279]
Length = 156
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 92/153 (60%), Gaps = 4/153 (2%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+I +T++G K+++EL + + E+ I++ I EARA+GDLSENAEY AAKE Q N R+
Sbjct: 5 QIVLTAEGRKKLEEELAYLEGEKAKEIVEHIKEARAFGDLSENAEYDAAKEDQARNAARI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AE+ + A+ D S ++ G+ V+LV+ G+ ++ IVG E +V +S
Sbjct: 65 AEIRATLANAQ--DAVAGSNMIVSIGSNVTLVD-GEGEASDFTIVGTTETNVLEHKISNE 121
Query: 124 SPIARALIGKELGDIISVN-APGGEKTYEILQV 155
SP+ RA+IG G+ + V A G ++ Y I ++
Sbjct: 122 SPVGRAIIGHAEGESVEVVLASGKKRVYTIAKI 154
>gi|227894423|ref|ZP_04012228.1| transcription elongation factor GreA [Lactobacillus ultunensis DSM
16047]
gi|227863793|gb|EEJ71214.1| transcription elongation factor GreA [Lactobacillus ultunensis DSM
16047]
Length = 153
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 3/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK + R+ L
Sbjct: 7 MTPEGYKQIEDEI-ARLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ AE++ T ++ G +V L + D + Y+IVG EAD+ +G +S SP+
Sbjct: 66 GKQLKYAEIV--KTKDDGKVDLGKSVVLKFDDDDDTEQYKIVGRMEADLAAGKISFDSPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++ KE G ++V AP GE I++V
Sbjct: 124 GQAIMKKEAGTTVAVEAPAGEYKVTIVEV 152
>gi|197301310|ref|ZP_03166395.1| hypothetical protein RUMLAC_00041 [Ruminococcus lactaris ATCC
29176]
gi|197299628|gb|EDY34143.1| hypothetical protein RUMLAC_00041 [Ruminococcus lactaris ATCC
29176]
Length = 160
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 84/149 (56%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ EL
Sbjct: 9 LTYAGLKALEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + D+I G TV + + ++ ++IVG EA+ G +S SP+
Sbjct: 69 EAILKNAEVVVEDEVDLDKINVGCTVKVFDITFDEEMEFKIVGSTEANSLEGKISNESPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GK++ D++ V G Y++L +
Sbjct: 129 GQALMGKKVNDVVDVETQAGVIQYKVLDI 157
>gi|257464600|ref|ZP_05628971.1| transcription elongation factor GreB [Actinobacillus minor 202]
gi|257450260|gb|EEV24303.1| transcription elongation factor GreB [Actinobacillus minor 202]
Length = 162
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRAGWQALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V L E G+ Y+IVG E D +SI SP+
Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEEGEVAQYRIVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARALIGK D I+V P G+ + I
Sbjct: 126 ARALIGKMQDDEITVETPVGKVMWFI 151
>gi|322514598|ref|ZP_08067631.1| transcription elongation factor GreB [Actinobacillus ureae ATCC
25976]
gi|322119537|gb|EFX91624.1| transcription elongation factor GreB [Actinobacillus ureae ATCC
25976]
Length = 162
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 80/141 (56%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + QEL++ ++ERP++ +A+SEA A D SENAEY K + R+ L
Sbjct: 7 ITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALDDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ F A V L E G+ K Y+IVG E D +SI SP+
Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFRAWVEL-ENEQGETKQYRIVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGE 147
AR+LIGKE+ D I V+ P G+
Sbjct: 126 ARSLIGKEVDDEIKVDTPLGK 146
>gi|153833935|ref|ZP_01986602.1| transcription elongation factor GreB [Vibrio harveyi HY01]
gi|148869773|gb|EDL68750.1| transcription elongation factor GreB [Vibrio harveyi HY01]
Length = 161
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 89/148 (60%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+++++ EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYNRLKTELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ + +++D S ++ FGA V +E +GD KN++IVG E D + G +SI S
Sbjct: 66 RKRLEQVKMVDYSPQQEGKVFFGAWVE-IENEAGDVKNFRIVGPDEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ KE+ D +V P G K + I
Sbjct: 124 PMARALLKKEVDDEFAVRTPEGYKEWFI 151
>gi|319936519|ref|ZP_08010934.1| transcription elongation factor [Coprobacillus sp. 29_1]
gi|319808411|gb|EFW04966.1| transcription elongation factor [Coprobacillus sp. 29_1]
Length = 194
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K D ++ E+ R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L
Sbjct: 32 LTQKDIDAMKAEIEHRKVVVRKELLEDVKEARAHGDLSENFEYHAAKKEKNRNESRIRYL 91
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I AEVI + D I V L ++ D + Y+IV + GLVS SPI
Sbjct: 92 ERMIKTAEVISDES-KDDEIGLNKIVELYFEDEDDVETYKIVTTVRGNSLQGLVSTESPI 150
Query: 127 ARALIGKELGDI--ISVNAPGG 146
+AL+G ++GD I +NA G
Sbjct: 151 GKALLGHKVGDKVWIPINANAG 172
>gi|209693811|ref|YP_002261739.1| transcription elongation factor GreB [Aliivibrio salmonicida
LFI1238]
gi|208007762|emb|CAQ77881.1| transcription elongation factor GreB [Aliivibrio salmonicida
LFI1238]
Length = 155
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 85/144 (59%), Gaps = 1/144 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF+K+Q EL + +E+RP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGFNKLQDELTFLWKEDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+D S ++ FGA V ++E GD +++IVG E + +SI SP+
Sbjct: 66 RKRLDQVKVVDYSPQQDGKVFFGAFV-VIENEQGDTLSFRIVGPDEIFGRHDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTY 150
ARALI KE+ + V P G+K +
Sbjct: 125 ARALIKKEVDEEAIVKTPEGDKEW 148
>gi|240949386|ref|ZP_04753727.1| transcription elongation factor GreB [Actinobacillus minor NM305]
gi|240296135|gb|EER46791.1| transcription elongation factor GreB [Actinobacillus minor NM305]
Length = 162
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRDGWQALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V L E G+ Y+IVG E D +SI SP+
Sbjct: 67 SKRLEVLQIVDYHPKQEGKVFFGAWVEL-ENEEGEVAQYRIVGCDEFDPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK D I+V P G+ + I ++
Sbjct: 126 ARALIGKMQDDEITVETPIGKVMWFINKI 154
>gi|260770789|ref|ZP_05879718.1| transcription elongation factor GreB [Vibrio furnissii CIP 102972]
gi|260614026|gb|EEX39216.1| transcription elongation factor GreB [Vibrio furnissii CIP 102972]
gi|315178831|gb|ADT85745.1| transcription elongation factor GreB [Vibrio furnissii NCTC 11218]
Length = 161
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K+++E + E RP + K ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYEKLKKEHDYLWHERRPEVTKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
++ +++D S ++ FGA V +E ++GD K ++IVG +E D +SI S
Sbjct: 66 RKLLPELKIVDYSPQQEGKVFFGAWVE-IENSAGDVKRFRIVGPEEIYGDDVKEYISIDS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ KE+ D V P GEK + I ++
Sbjct: 125 PMARALLKKEVDDEFVVRTPSGEKEWFINRI 155
>gi|238926931|ref|ZP_04658691.1| elongation factor GreA [Selenomonas flueggei ATCC 43531]
gi|238885165|gb|EEQ48803.1| elongation factor GreA [Selenomonas flueggei ATCC 43531]
Length = 156
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+ +T G++K+ ++L + + R I + + A A GDLSEN+EY AK Q EG +
Sbjct: 5 KVMLTEDGYNKLVEKLNYLKSVRRIEIAERLKAAIALGDLSENSEYDDAKNEQAFLEGEI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELEN I +++I G + G+ V++ + +++ + IVG EAD G +S
Sbjct: 65 QELENKIRNSDII--KAGDGKTVTMGSRVTVKDLEFDEEETFLIVGSTEADPDEGKISNE 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ AL+G+++G I+VNAP G Y+I+ +
Sbjct: 123 SPLGEALLGQKIGRTINVNAPAGVIQYKIIDI 154
>gi|221632874|ref|YP_002522096.1| transcription elongation factor greA [Thermomicrobium roseum DSM
5159]
gi|221156489|gb|ACM05616.1| transcription elongation factor greA [Thermomicrobium roseum DSM
5159]
Length = 156
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 97/159 (61%), Gaps = 8/159 (5%)
Query: 1 MVDKIPV--TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
MV + P+ T +G ++QEL +Q + P +++ + + GD+S+N+EY+ KE L
Sbjct: 1 MVRERPIVLTPEGKAALEQELEHLRQHKLPLLLERLQQLSNEGDISDNSEYEDTKEELVL 60
Query: 59 NEGRMAELENIITRAEVIDISTMSG--DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
E R+ E+E+I+ RA++I T +G D + G+ V+++++ G + + IV +EA+
Sbjct: 61 TEARIREIEHILRRAQMI---TRAGPQDEVRLGSRVTVIDEE-GSVETWVIVSPEEANAA 116
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
G +SI SP+ AL+GK +G ++V APGGE + I ++
Sbjct: 117 QGRISIESPVGAALLGKRVGTTVTVRAPGGEMRFTIQRI 155
>gi|197294551|ref|YP_001799092.1| transcription elongation factor GreA [Candidatus Phytoplasma
australiense]
gi|171853878|emb|CAM11840.1| Transcription elongation factor [Candidatus Phytoplasma
australiense]
Length = 156
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 89/149 (59%), Gaps = 3/149 (2%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +KI +T G K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L
Sbjct: 1 MKNKIYELTQPGILKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ E++NI+ V+ +S I G VSL NSG ++ +++V E+D S
Sbjct: 61 EYRITEIQNILKNVRVVKVS--KDKEINIGKKVSLKMLNSGTEEEFELVSTLESDPFSNK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK 148
+SI SP+ + + G E+GD++ + + G K
Sbjct: 119 ISIESPLGKKIKGHEIGDVVFITSETGTK 147
>gi|327480631|gb|AEA83941.1| transcription elongation factor GreB [Pseudomonas stutzeri DSM
4166]
Length = 165
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ +++ FGA V+L E G + Y+IVG E D++ G++SI SP+
Sbjct: 75 TKRLEKLKVVSERPGDPNKVYFGAWVTL-EDEDGAQARYRIVGPDELDLRQGMISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+GK L + V P G K + ++ +
Sbjct: 134 ARALVGKALDAEVQVQTPTGTKLWYVVAI 162
>gi|291520199|emb|CBK75420.1| transcription elongation factor GreA [Butyrivibrio fibrisolvens
16/4]
Length = 159
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G ++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ E+
Sbjct: 8 LTAEGLRVLEDELEDLKVNKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ I G TV+L++ ++ Y+IVG EA+ G +S SP+
Sbjct: 68 EKILKNAEVV-TDEHDTKNINIGWTVTLLDVEFDEEVEYKIVGSTEANSLKGKISNESPV 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153
+A++G + GD ++V GE Y+IL
Sbjct: 127 GKAILGHKKGDTVTVETEAGEFQYKIL 153
>gi|291533674|emb|CBL06787.1| transcription elongation factor GreA [Megamonas hypermegale
ART12/1]
Length = 178
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T +G K++++L + + R + + A A GDLSEN+EY AK Q
Sbjct: 1 MADKRVVLTEEGLKKLEEKLEYLKSVRRLEVADRLKAAIALGDLSENSEYDDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG + LE+ I +E+I + D + G TV + + + + Y IVG EAD G
Sbjct: 61 EGEILTLESQIRNSEIIKADDSNKDVVHLGNTVVIKDMEYDEDETYTIVGSTEADTTEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ A++GK +G ++ V P G Y+I+++
Sbjct: 121 ISNESPVGMAILGKTVGTVVQVKVPAGTLEYKIVEI 156
>gi|227486472|ref|ZP_03916788.1| transcription elongation factor [Anaerococcus lactolyticus ATCC
51172]
gi|227235653|gb|EEI85668.1| transcription elongation factor [Anaerococcus lactolyticus ATCC
51172]
Length = 157
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 88/148 (59%), Gaps = 2/148 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +K++ EL + + ++RP + + I AR++GDLSENA+Y AK Q E R+ ++
Sbjct: 9 LTKEKLEKLEDELEYLKTKKRPEMAEKIKIARSFGDLSENADYDEAKNEQGEVESRIMKI 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E++I A+ I++ S D + G TV L ++ + Y+IVG E++ G +S SP+
Sbjct: 69 EDMIRNAKTIEVDENS-DTVGVGNTVCLYDEEFEEDVEYKIVGTAESNPLEGYISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
A+IG ++ D + V P G K Y +++
Sbjct: 128 GEAIIGHKINDRVEVETPNG-KMYFVIK 154
>gi|332665125|ref|YP_004447913.1| transcription elongation factor GreA [Haliscomenobacter hydrossis
DSM 1100]
gi|332333939|gb|AEE51040.1| transcription elongation factor GreA [Haliscomenobacter hydrossis
DSM 1100]
Length = 156
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 92/149 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF+++ EL + R +AI+EAR GDLSENAEY AAKE Q L E R+ +L
Sbjct: 6 LTKEGFERLTGELDDMKTRGRAEAARAIAEAREKGDLSENAEYDAAKEAQGLLELRINDL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + A V+D S + ++ A V+++ + K YQ+V + EAD+++ VS+SSP+
Sbjct: 66 EKQLANARVLDASEVDTSKVTVLAKVTIMNTKNKAKITYQLVSESEADLKAKKVSVSSPM 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+GK +G+ +V P G+ ++I+ +
Sbjct: 126 GQGLLGKTIGETATVRTPNGDMQFKIVDI 154
>gi|157963827|ref|YP_001503861.1| transcription elongation factor GreB [Shewanella pealeana ATCC
700345]
gi|157848827|gb|ABV89326.1| transcription elongation factor GreB [Shewanella pealeana ATCC
700345]
Length = 159
Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +GF+K+Q+EL + +E RP I K +S A + GD SENA+Y K + R+ L
Sbjct: 6 VTREGFEKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKRKLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+D S ++ FGA V +E + G+K ++IVG E + +SI SP+
Sbjct: 66 RKTLENVQVVDYSPAQEGKVFFGAWVE-IENDDGNKLAFKIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AR L+ KE+ D + P GE+ + I ++
Sbjct: 125 ARGLLKKEVDDEAVIKTPTGEQVWYINRI 153
>gi|319897915|ref|YP_004136112.1| transcription elongation factor [Haemophilus influenzae F3031]
gi|317433421|emb|CBY81802.1| transcription elongation factor [Haemophilus influenzae F3031]
Length = 158
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWLVLDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V L E G+ Y+IVG E +SI SP+
Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETNQYRIVGCDEFAPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGK L D + V P G
Sbjct: 126 ARALIGKTLDDEVRVETPSG 145
>gi|261879064|ref|ZP_06005491.1| transcription elongation factor GreA [Prevotella bergensis DSM
17361]
gi|270334344|gb|EFA45130.1| transcription elongation factor GreA [Prevotella bergensis DSM
17361]
Length = 155
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 87/140 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ +L + ERP+ AI+EA GDLSEN+EY+AAKE Q E ++ E+
Sbjct: 4 MSKEGYDKLVAQLHQLEAIERPKASAAIAEAADKGDLSENSEYEAAKEAQVHLENKINEM 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I +A+++D+S +S D + + V + + K Y IV + EA+++ +SI +PI
Sbjct: 64 KMTIAQAKIVDMSRLSADEVQIMSKVEMTNLATKKKMTYTIVSESEANLKENKISIHTPI 123
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ L+ K++G+ + + P G
Sbjct: 124 AQGLLNKKVGEEVEIKVPRG 143
>gi|253996794|ref|YP_003048858.1| transcription elongation factor GreB [Methylotenera mobilis JLW8]
gi|253983473|gb|ACT48331.1| transcription elongation factor GreB [Methylotenera mobilis JLW8]
Length = 161
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF+ ++ E + ERP I++ +S A + GD SEN +Y K + R L
Sbjct: 10 ITPEGFEALRAEFHQLYKIERPEIVRTVSWAASNGDRSENGDYIYGKRRLRQIDSRCRHL 69
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AE++D S +++ FGA V+L + + Y+IVG E + G +S SP
Sbjct: 70 MRRMDLAEIVDASQQQHLEKVYFGAWVTLYNLDDDTEYTYRIVGKDELEPSKGYISWVSP 129
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++++GK +GD + P GE T+EI+++
Sbjct: 130 LAKSILGKSIGDTVRAATPKGEATFEIIEI 159
>gi|229815845|ref|ZP_04446169.1| hypothetical protein COLINT_02898 [Collinsella intestinalis DSM
13280]
gi|229808540|gb|EEP44318.1| hypothetical protein COLINT_02898 [Collinsella intestinalis DSM
13280]
Length = 156
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 4/155 (2%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V +I +T++G K+++EL + + E+ I++ I EARA+GDLSENAEY AAKE Q N
Sbjct: 3 VSQIVLTAEGRKKLEEELAYLEGEKSREIVEHIKEARAFGDLSENAEYDAAKEDQARNAA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AE+ + A+ D S ++ G+ V+L++ G+ ++ IVG E +V +S
Sbjct: 63 RIAEIRATLANAQ--DAVAGSSMIVSIGSVVTLID-GEGEASDFTIVGTTETNVLEHKIS 119
Query: 122 ISSPIARALIGKELGDIISVN-APGGEKTYEILQV 155
SP+ RA+IG G+ + V A G + Y I ++
Sbjct: 120 NESPVGRAIIGHGEGESVEVVLANGKTRVYTIAKI 154
>gi|327395566|dbj|BAK12988.1| transcription elongation factor GreB [Pantoea ananatis AJ13355]
Length = 158
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF+ ++ EL +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGFNTLKAELDHLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I + ++D S ++ FGA V VE + GD K ++IVG E + +SI SP+
Sbjct: 66 SKSIEQLRIVDYSPQQDGKVFFGAWVE-VENDDGDVKRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ K +GD V P G + + ++ ++
Sbjct: 125 ARALLKKAVGDAAVVETPAGPACWYVNEISYV 156
>gi|291520868|emb|CBK79161.1| transcription elongation factor GreA [Coprococcus catus GD/7]
Length = 160
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 83/149 (55%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ EL
Sbjct: 9 MTFAGLRALEDELFDLKVYKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ EV+ + D + G+ V L + ++ Y IVG EAD +G +S SP+
Sbjct: 69 EKLLKNVEVVGQDEVDADTVGIGSRVKLYDVEMDEEVEYTIVGSTEADALNGKISNESPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ALIG ++G+ I V G+ ++IL++
Sbjct: 129 GAALIGSKVGETIVVETISGDLEFKILEI 157
>gi|309792630|ref|ZP_07687091.1| transcription elongation factor GreA [Oscillochloris trichoides
DG6]
gi|308225352|gb|EFO79119.1| transcription elongation factor GreA [Oscillochloris trichoides
DG6]
Length = 157
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T G K++ EL ER + + I+ A+ GD+SE+ EY+ AK+ Q L
Sbjct: 1 MTDKPTYLTRDGRAKLEAELEELTTVERKHVAERIAAAKELGDISESGEYEDAKKSQALL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ EL++I++RAE+ID S + G++V++ + +++ + IVG EA+ + G
Sbjct: 61 EGRIRELKHILSRAELIDEDAHSTGEVRVGSSVTVRLEEDNEEETWTIVGSAEANPRQGR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPI AL+GK ++V P G IL+V
Sbjct: 121 ISNESPIGAALLGKRARSKVTVQTPSGVMKLTILKV 156
>gi|78045034|ref|YP_361163.1| transcription elongation factor GreA [Carboxydothermus
hydrogenoformans Z-2901]
gi|77997149|gb|ABB16048.1| transcription elongation factor GreA [Carboxydothermus
hydrogenoformans Z-2901]
Length = 157
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T +G K++QEL + +R + + I +A +GD+SEN+EY+ AK Q EGR+
Sbjct: 6 VILTREGLKKLEQELEELKSVKRREVAERIKQAIEFGDISENSEYEDAKNAQAFIEGRII 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ A++I+ + D + G+ V L + G + Y +VG EAD + +S S
Sbjct: 66 TLEKMLRNAKIIE-NDQQKDVVTLGSKVVLKDLEYGVVEEYYLVGSAEADPSANKISNES 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+ A++GK+ G ++ V P G YEI+ +L
Sbjct: 125 PVGSAILGKKKGTVVEVKVPAGTLKYEIVDIL 156
>gi|330965418|gb|EGH65678.1| transcription elongation factor GreB [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 157
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITQGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ S R+ FGA V +E +GD K +++VG E ++ +SI SP+
Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRVVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ KE GD + VN P GEK + + +++
Sbjct: 125 ARALLKKEAGDEVLVNTPEGEKLWFVNSIVY 155
>gi|77460238|ref|YP_349745.1| transcription elongation factor GreB [Pseudomonas fluorescens
Pf0-1]
gi|77384241|gb|ABA75754.1| transcription elongation factor [Pseudomonas fluorescens Pf0-1]
Length = 165
Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGEARMRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++V+ +++ FGA V+ +E G + Y+IVG E D++ GL+SI SP+
Sbjct: 75 TKRLEASKVVSEKPSDPNKVYFGAWVT-IEDEDGKQSRYRIVGPDELDLKLGLISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARALIGK L + V P GE+ I+ +
Sbjct: 134 ARALIGKALDAEVRVQTPTGEQFVYIVAI 162
>gi|71734764|ref|YP_274255.1| transcription elongation factor GreB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71555317|gb|AAZ34528.1| transcription elongation factor GreB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320329094|gb|EFW85092.1| transcription elongation factor GreB [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 157
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ KE GD + VN P GEK + + +++
Sbjct: 125 ARALLKKEEGDEVLVNTPEGEKLWFVNSIVY 155
>gi|254521999|ref|ZP_05134054.1| transcription elongation factor GreB [Stenotrophomonas sp. SKA14]
gi|219719590|gb|EED38115.1| transcription elongation factor GreB [Stenotrophomonas sp. SKA14]
Length = 168
Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T+ G +++ EL WR + RP ++KA++ A A GD SENAEY K+ + R+
Sbjct: 15 ITAAGHARLKAELDELWRVR--RPEVVKALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+D + + FGA V L +SGD Y+IVG E D G +SI S
Sbjct: 73 YLTKRLEALRVVDTTPTDPQAVFFGAWVDLENVDSGDTSRYRIVGPDETDAGLGWISIDS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ K L D SV PGG+ T+ ++ V
Sbjct: 133 PLARALLKKRLDDEFSVELPGGQFTFAVIGV 163
>gi|126642687|ref|YP_001085671.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
17978]
gi|169794997|ref|YP_001712790.1| transcription elongation factor and transcript cleavage
[Acinetobacter baumannii AYE]
gi|184159217|ref|YP_001847556.1| transcription elongation factor [Acinetobacter baumannii ACICU]
gi|213158338|ref|YP_002320389.1| transcription elongation factor GreB [Acinetobacter baumannii
AB0057]
gi|215482547|ref|YP_002324737.1| transcription elongation factor GreB [Acinetobacter baumannii
AB307-0294]
gi|260556477|ref|ZP_05828695.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
19606]
gi|301346025|ref|ZP_07226766.1| transcription elongation factor GreB [Acinetobacter baumannii
AB056]
gi|301511853|ref|ZP_07237090.1| transcription elongation factor GreB [Acinetobacter baumannii
AB058]
gi|301594320|ref|ZP_07239328.1| transcription elongation factor GreB [Acinetobacter baumannii
AB059]
gi|332855917|ref|ZP_08436091.1| transcription elongation factor GreB [Acinetobacter baumannii
6013150]
gi|332867120|ref|ZP_08437399.1| transcription elongation factor GreB [Acinetobacter baumannii
6013113]
gi|332876188|ref|ZP_08443967.1| transcription elongation factor GreB [Acinetobacter baumannii
6014059]
gi|126388571|gb|ABO13069.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
17978]
gi|169147924|emb|CAM85787.1| transcription elongation factor and transcript cleavage
[Acinetobacter baumannii AYE]
gi|183210811|gb|ACC58209.1| Transcription elongation factor [Acinetobacter baumannii ACICU]
gi|213057498|gb|ACJ42400.1| transcription elongation factor GreB [Acinetobacter baumannii
AB0057]
gi|213986627|gb|ACJ56926.1| transcription elongation factor GreB [Acinetobacter baumannii
AB307-0294]
gi|260409736|gb|EEX03036.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
19606]
gi|322509131|gb|ADX04585.1| Transcription elongation factor GreB [Acinetobacter baumannii
1656-2]
gi|323519159|gb|ADX93540.1| transcription elongation factor [Acinetobacter baumannii
TCDC-AB0715]
gi|332727236|gb|EGJ58685.1| transcription elongation factor GreB [Acinetobacter baumannii
6013150]
gi|332734193|gb|EGJ65323.1| transcription elongation factor GreB [Acinetobacter baumannii
6013113]
gi|332735622|gb|EGJ66670.1| transcription elongation factor GreB [Acinetobacter baumannii
6014059]
Length = 164
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125
+ +++D S ++ FGA V +E G++K +IVG D+ D +SI SP
Sbjct: 66 GKRLEELKIVDYSPEQEGKVYFGAWVD-IENEEGEQKTLRIVGVDEIYDHHPQHISIESP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+ KE+ D + V+ P G+K + I
Sbjct: 125 MARALLSKEVDDEVEVHTPLGKKLWYI 151
>gi|118581707|ref|YP_902957.1| transcription elongation factor GreB [Pelobacter propionicus DSM
2379]
gi|118504417|gb|ABL00900.1| transcription elongation factor GreB [Pelobacter propionicus DSM
2379]
Length = 157
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 92/152 (60%), Gaps = 8/152 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T++G K++ E + + ERP++++ +S+A A GD SENAEY K L+ ++ +
Sbjct: 5 ITAEGLKKLEAEFDYLWRVERPKVVRGVSDAAAEGDRSENAEYIYGKKRLREIDR----K 60
Query: 66 LENIITRAEVIDISTMSG--DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L+++ +R +++ + ++ + + FG VS E G + YQ+VG E DV SG +SI
Sbjct: 61 LKHLGSRLKLLKVRSLPAKPESVGFGCWVSY-EDEDGAGRCYQLVGPDEFDVSSGRISID 119
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +AL+GK + D ++++ P G+ T I +
Sbjct: 120 SPVGQALLGKRVDDEVTISRPNGDLTVYITAI 151
>gi|269836289|ref|YP_003318517.1| transcription elongation factor GreA [Sphaerobacter thermophilus
DSM 20745]
gi|269785552|gb|ACZ37695.1| transcription elongation factor GreA [Sphaerobacter thermophilus
DSM 20745]
Length = 157
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 81/143 (56%), Gaps = 3/143 (2%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++IP+T +G +Q EL R I +A+ AR GDL ENA Y AAK Q EGR
Sbjct: 4 ERIPITKEGLKALQDELDDLVNRRRVEIAQALQAAREEGDLRENAGYDAAKHDQAFIEGR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ E+E+I+ RAEVID + R+ G+TV++ + G ++ Y IVG EA +G +S
Sbjct: 64 IREIEDILRRAEVIDEAPNGDARVVRLGSTVTI--EIDGAQETYTIVGAVEAKPAAGRIS 121
Query: 122 ISSPIARALIGKELGDIISVNAP 144
SP RAL+G G+ + + P
Sbjct: 122 NESPFGRALLGHREGEEVEIQTP 144
>gi|154495827|ref|ZP_02034523.1| hypothetical protein BACCAP_00107 [Bacteroides capillosus ATCC
29799]
gi|150275025|gb|EDN02073.1| hypothetical protein BACCAP_00107 [Bacteroides capillosus ATCC
29799]
Length = 197
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 1/135 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K +++EL +R+ RP++++A+ EAR +GDLSEN EY+AAK+ +N NE R+ L
Sbjct: 35 LTRKDLQMMREELDYRRITLRPQLLEAVKEARGFGDLSENFEYKAAKQEKNRNESRIRFL 94
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN+I A VI + D + V++ + + + YQ+V D G +S SP+
Sbjct: 95 ENMIRTAVVIS-DQAAPDTVGLYDKVTVYLEEDDETETYQVVTTMRQDALHGRISKESPV 153
Query: 127 ARALIGKELGDIISV 141
AL+GK +GD I +
Sbjct: 154 GSALLGKRVGDRIYI 168
>gi|257486310|ref|ZP_05640351.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|298486552|ref|ZP_07004612.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298159029|gb|EFI00090.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330888219|gb|EGH20880.1| transcription elongation factor GreB [Pseudomonas syringae pv. mori
str. 301020]
gi|330988435|gb|EGH86538.1| transcription elongation factor GreB [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331010600|gb|EGH90656.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 157
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 83/144 (57%), Gaps = 1/144 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTY 150
ARAL+ KE GD + VN P GEK +
Sbjct: 125 ARALLKKEEGDEVLVNTPEGEKLW 148
>gi|241764061|ref|ZP_04762099.1| transcription elongation factor GreB [Acidovorax delafieldii 2AN]
gi|241366592|gb|EER61073.1| transcription elongation factor GreB [Acidovorax delafieldii 2AN]
Length = 187
Score = 90.5 bits (223), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 90/152 (59%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G+ ++++EL ERP+++ + A + GD SEN +Y K+ + R+ L
Sbjct: 30 MTAQGYARLREELLELIDTERPKMVDIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S G D++ FGATV+ +E N G ++ I+G EAD + G VS SP
Sbjct: 90 TKRLEIAEVVDPSLHDGSDQVFFGATVTYLE-NGGTERTITILGIDEADSRQGQVSWMSP 148
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ +GD IS+ +PGG E+L V +
Sbjct: 149 VARALLKSRVGDEISMGSPGGVLLLEVLNVRY 180
>gi|320324941|gb|EFW81013.1| transcription elongation factor GreB [Pseudomonas syringae pv.
glycinea str. B076]
Length = 157
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ KE GD + VN P GEK + + +++
Sbjct: 125 ARALLKKEEGDEVLVNMPEGEKLWFVNSIVY 155
>gi|256420286|ref|YP_003120939.1| transcription elongation factor GreA [Chitinophaga pinensis DSM
2588]
gi|256035194|gb|ACU58738.1| transcription elongation factor GreA [Chitinophaga pinensis DSM
2588]
Length = 157
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 55/148 (37%), Positives = 96/148 (64%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT + D++++EL + + + R I +AI+EAR GDL ENAEY AAKE Q ++E ++A L
Sbjct: 7 VTKETLDQMREELSFLKTKGRAEIARAIAEAREKGDLKENAEYDAAKEAQGMHEAKVAIL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSGLVSISS 124
E+ I A +++ ++ +++ V++ N +KK YQ+V ++EAD++ +S++S
Sbjct: 67 ESAIATARIVEADSIDTSKVSILCKVTIT--NMANKKTVTYQLVSEKEADLKLNKISVTS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
PI + L+GK +G+I V+AP G ++I
Sbjct: 125 PIGKGLLGKAVGEIADVHAPNGSLKFKI 152
>gi|45656682|ref|YP_000768.1| transcript cleavage factor/unknown domain fusion protein
[Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
gi|294828301|ref|NP_713558.2| transcript cleavage factor/unknown domain fusion protein
[Leptospira interrogans serovar Lai str. 56601]
gi|45599918|gb|AAS69405.1| transcriptional elongation factor [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|293386153|gb|AAN50576.2| transcript cleavage factor/unknown domain fusion protein
[Leptospira interrogans serovar Lai str. 56601]
Length = 926
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 84/151 (55%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I VT + ++ ++E E P K I EA+ GDL ENAEY+AA E Q + +
Sbjct: 766 ILVTRRALNRKKEEFEHLLNVEMPENSKDIGEAQERGDLRENAEYKAAMEKQVQLQAAIK 825
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE I A ++D++ + D+I G T L +++G+ Y I+G +AD + ++S S
Sbjct: 826 RLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADTEKHIISYQS 885
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+A++L+GK+ GD +N G E Y +L +
Sbjct: 886 PLAKSLLGKKTGDSAVLNLTGAETRYTVLDI 916
>gi|315127991|ref|YP_004069994.1| transcription elongation factor GreB [Pseudoalteromonas sp. SM9913]
gi|315016505|gb|ADT69843.1| transcription elongation factor GreB [Pseudoalteromonas sp. SM9913]
Length = 156
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G DK+ +EL + ++ RP I K ++ A + GD S+NA+Y+ K L + R+ L
Sbjct: 6 ITREGLDKLNKELNYLWRDYRPEITKKVAWAASLGDRSDNADYKENKRLLRQIDSRIRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I +VID S ++ FGA V +E + G+ K ++IVG E ++ +SI SP+
Sbjct: 66 RKRIEAVKVIDYSPQQAGKVFFGAWVE-IENDDGETKAFRIVGPDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARA++ KE+ D V P G K + I ++
Sbjct: 125 ARAMLKKEVDDEFQVKTPVGVKEWFINKI 153
>gi|304436291|ref|ZP_07396269.1| transcription elongation factor GreA [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304370696|gb|EFM24343.1| transcription elongation factor GreA [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 156
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+ +T G++K+ ++L + + R I + + A A GDLSEN+EY AK Q EG +
Sbjct: 5 KVMLTEDGYNKLVEKLNYLKSVRRIEIAERLKAAIALGDLSENSEYDDAKNEQAFLEGEI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELEN I +++ I G + G+ V + + +++ + IVG EAD G +S
Sbjct: 65 QELENKIRNSDI--IKAGDGKTVTMGSRVMVKDLEFDEEETFLIVGSTEADPDEGKISNE 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ AL+G+++G I+VNAP G Y+I+ +
Sbjct: 123 SPLGEALLGQKIGRTINVNAPAGVIQYKIIDI 154
>gi|295106038|emb|CBL03581.1| transcription elongation factor GreA [Gordonibacter pamelaeae
7-10-1-b]
Length = 156
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 84/144 (58%), Gaps = 3/144 (2%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D +T +G DK+++EL + + E+R I + I AR +GD+SEN+EY AK Q + E R
Sbjct: 4 DNFILTQEGKDKLEEELHYLETEKRAEIGERIKVAREFGDISENSEYDDAKNEQGMMEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+AE+ I++ A V++ S ++ G+ V++ G ++ + IVG E+D +G +S
Sbjct: 64 IAEISRILSEATVVNTPKRS-SKVNIGSMVTV--DMGGKERVFTIVGGAESDAAAGKISN 120
Query: 123 SSPIARALIGKELGDIISVNAPGG 146
SP+ AL+G + GD + P G
Sbjct: 121 ESPVGAALLGHKKGDKVETTGPTG 144
>gi|330958996|gb|EGH59256.1| transcription elongation factor GreB [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 157
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRDGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ S R+ GA V +E +GD K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDMRVVSYSPEQEGRVFLGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ KE+GD + VN P GEK + + +++
Sbjct: 125 ARALLKKEVGDEVLVNTPEGEKLWFVNSIVY 155
>gi|258614382|ref|ZP_05712152.1| transcription elongation factor GreA [Enterococcus faecium DO]
Length = 130
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +EN+I A++ID + D ++ G TV+ +E G+++ Y IVG EAD SG
Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARA 129
+S SPIA+A
Sbjct: 121 ISNDSPIAQA 130
>gi|297616355|ref|YP_003701514.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus
DSM 12680]
gi|297144192|gb|ADI00949.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus
DSM 12680]
Length = 158
Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 83/151 (54%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T +G K++ EL + R + I +A +GD++EN+EY+ AK Q EGR+
Sbjct: 6 IILTKEGLKKLEDELEHLKSVRRKEVASRIKQAIEFGDITENSEYEDAKNEQAFVEGRIL 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE + A +I+ + D ++ G+ V L++ +G + + +V E+D + +S S
Sbjct: 66 CLEKTLRNARLIEDDDIHTDVVSLGSRVRLLDIATGKEITFTVVASAESDPKQSKISDES 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ RA+IGK + + V P G KTY I+ +
Sbjct: 126 PVGRAIIGKPINSEVEVAVPAGTKTYRIVSI 156
>gi|167629420|ref|YP_001679919.1| transcription elongation factor grea [Heliobacterium modesticaldum
Ice1]
gi|167592160|gb|ABZ83908.1| transcription elongation factor grea [Heliobacterium modesticaldum
Ice1]
Length = 160
Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 88/152 (57%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
++ +T++G K+++EL + + +R ++ + I +A YGD+SEN+EY+ AK Q EGR+
Sbjct: 5 QVMLTAEGLKKLEEELEFLKSHKRGQVAERIKQAIDYGDISENSEYEDAKNEQAFVEGRI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LE ++ A++I+ + + GA V L + + Y IVG EAD +S
Sbjct: 65 ITLEKMLRNAKLIEGGEGETNVVTIGARVLLKDLEDDSEFEYTIVGSAEADPSQSKISNV 124
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +AL+G+ G ++ V P G+ YEI+ +
Sbjct: 125 SPVGKALLGQPKGAVVEVQVPMGKIKYEIVDI 156
>gi|163802255|ref|ZP_02196150.1| transcription elongation factor GreB [Vibrio sp. AND4]
gi|159174060|gb|EDP58870.1| transcription elongation factor GreB [Vibrio sp. AND4]
Length = 161
Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++ E E+RP I K ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYNKLKAEHDHLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ +++D S ++ FGA V +E +GD K ++IVG +E D + G +SI S
Sbjct: 66 RKFLPEVKIVDYSPQQEGKVFFGAWVE-IENEAGDVKQFRIVGPEEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARAL+ KE+ D I+V P G+K + I + ++
Sbjct: 124 PMARALLKKEVDDEITVRTPEGDKEWFINSITYM 157
>gi|117620745|ref|YP_854834.1| transcription elongation factor GreB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562152|gb|ABK39100.1| transcription elongation factor GreB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 157
Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QEL + +EERP + ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYNKLKQELDFLWREERPETTRKVAWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++D S ++ FGA V VE G+ K ++IVG E + +SI SP+
Sbjct: 66 RKCLEELGIVDYSPAQEGKVFFGAWVE-VENEEGETKRFRIVGYDEIFERKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+ KE+GD V P G+ + I ++
Sbjct: 125 ARALLKKEVGDEAIVRTPVGDACWYINEI 153
>gi|167745534|ref|ZP_02417661.1| hypothetical protein ANACAC_00225 [Anaerostipes caccae DSM 14662]
gi|317472902|ref|ZP_07932208.1| transcription elongation factor GreA [Anaerostipes sp. 3_2_56FAA]
gi|167655255|gb|EDR99384.1| hypothetical protein ANACAC_00225 [Anaerostipes caccae DSM 14662]
gi|316899622|gb|EFV21630.1| transcription elongation factor GreA [Anaerostipes sp. 3_2_56FAA]
Length = 159
Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G ++ EL+ + +R + + I EAR GDLSENAEY AAK+ Q E R+ EL
Sbjct: 9 LTQEGLKTLEDELQDLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEVID G I+ G V L + ++ Y IVG EAD+ + +S +PI
Sbjct: 69 EQILKNAEVIDEEFQHG-VISLGCLVKLEDLTFKEEVTYHIVGSTEADILNNKISNEAPI 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+G ++GD++ V G Y++L V
Sbjct: 128 GKALLGAKIGDVVEVEGVGQVNQYKVLDV 156
>gi|90412689|ref|ZP_01220690.1| transcription elongation factor GreB [Photobacterium profundum
3TCK]
gi|90326264|gb|EAS42683.1| transcription elongation factor GreB [Photobacterium profundum
3TCK]
Length = 156
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 85/144 (59%), Gaps = 1/144 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK+++EL + +EERP I K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYDKLKKELDFLWREERPEITKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+D S ++ FGA V +E ++K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEVVKVVDYSPQQDGKVFFGAFVE-IENEEAEQKTFRIVGPDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTY 150
ARAL+ KE+ + V P G+K +
Sbjct: 125 ARALLKKEVDEEFEVVTPQGKKLW 148
>gi|291520769|emb|CBK79062.1| transcription elongation factor GreA [Coprococcus catus GD/7]
Length = 167
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 77/128 (60%), Gaps = 1/128 (0%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
K+++E+ R+ R + A+ EAR GDLSEN EYQAAK +N NE R+ LE ++ A
Sbjct: 12 KMKEEIEHRKVVVRKEALAAVKEAREQGDLSENFEYQAAKREKNRNESRIRYLERMVKTA 71
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+VI + D + TV++ ++ +++ Y+IV DV GL+SI SP+ +AL+G
Sbjct: 72 KVIKDHS-KDDEVGLNNTVTVYFEDEDEEETYRIVTTVREDVLHGLISIDSPVGKALLGH 130
Query: 134 ELGDIISV 141
+GD + V
Sbjct: 131 RVGDTVHV 138
>gi|290473268|ref|YP_003466134.1| transcription elongation factor and transcript cleavage
[Xenorhabdus bovienii SS-2004]
gi|289172567|emb|CBJ79336.1| transcription elongation factor and transcript cleavage
[Xenorhabdus bovienii SS-2004]
Length = 160
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ + ERP + +A+S+A A GD SENAEY K+ + R+ L
Sbjct: 7 ITREGWHALDQELKYLWKVERPNVTQAVSDAAALGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D ++ FGA V VE ++ +++VG E + +SI SP+
Sbjct: 67 SKRLDALQIVDPDPRQEGKVFFGAWVK-VENEKAEEHIFRLVGPDEFEPAKKWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+GK++ D I+V P G Y IL++
Sbjct: 126 ARALLGKQVDDEITVMTPNGMAIYWILEI 154
>gi|220927851|ref|YP_002504760.1| transcription elongation factor GreA [Clostridium cellulolyticum
H10]
gi|219998179|gb|ACL74780.1| transcription elongation factor GreA [Clostridium cellulolyticum
H10]
Length = 158
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 89/152 (58%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
++ +T +G K+++EL + + +R + + I +A ++GD+SEN+EY AK Q EGR+
Sbjct: 5 EVVLTYEGLKKLEEELEFLRGTKRKEVAERIKQALSFGDISENSEYDEAKNEQAQVEGRI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LE+++ A +ID ++ D ++ G+ V + + ++ Y IVG EA+ +S
Sbjct: 65 VQLESMLKHARIIDEDEVNTDVVSIGSKVRIFDIEFDEEVEYLIVGSTEANPLKSKISNE 124
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ ALIG G+ + V P G ++IL++
Sbjct: 125 SPVGAALIGHTKGETVEVQVPDGVLKFKILEI 156
>gi|239503414|ref|ZP_04662724.1| transcription elongation factor GreB [Acinetobacter baumannii
AB900]
Length = 164
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125
+ +++D S ++ FGA V +E G +K +IVG D+ D +SI SP
Sbjct: 66 GKRLEELKIVDYSPEQEGKVYFGAWVD-IENEEGQQKTLRIVGVDEIYDHHPQHISIESP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+ KE+ D + V+ P G+K + I
Sbjct: 125 MARALLSKEVDDEVEVHTPLGKKLWYI 151
>gi|91776106|ref|YP_545862.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
gi|91710093|gb|ABE50021.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
Length = 165
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 85/150 (56%), Gaps = 1/150 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +++ E + ERP+++ ++ A + GD SEN +Y K+ + R+ L
Sbjct: 8 ITPEGYARLKDEFEQLYKVERPKVVSDVAWAASNGDRSENGDYIYGKKRLRQIDSRLRFL 67
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + ++I FGA V L + + +Y+IVG E D G +S SP
Sbjct: 68 MKRMDIAVVVDPAQQQDLEKIYFGAWVELYSIDKDSEHHYRIVGQDELDPGKGYISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ARAL+GK+ GD+I V P GE+ +EI+ V
Sbjct: 128 LARALLGKQPGDVIRVETPAGEERFEIVDV 157
>gi|330721758|gb|EGG99749.1| Transcription elongation factor GreB [gamma proteobacterium
IMCC2047]
Length = 170
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++Q E +RP++ +A+SEA A GD ENAEY K+ + R+ L
Sbjct: 15 ITPDGRQRLQDEFDQLWHVKRPQVTQAVSEAAAQGDRPENAEYIYGKKQLREIDSRLRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+D R+ F A V ++E +G++ Y+IVG E DV +S+ SP
Sbjct: 75 SKRLEHLKVVDRLPADQTRLFFCAWV-MLENEAGEQLEYRIVGPDEFDVHPAYISMDSPT 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+AL+ K+ GD + V AP G YEI+ V +
Sbjct: 134 AKALMKKQTGDEVEVVAPSGSVYYEIIAVRY 164
>gi|153814499|ref|ZP_01967167.1| hypothetical protein RUMTOR_00713 [Ruminococcus torques ATCC 27756]
gi|317500540|ref|ZP_07958762.1| transcription elongation factor [Lachnospiraceae bacterium
8_1_57FAA]
gi|145847993|gb|EDK24911.1| hypothetical protein RUMTOR_00713 [Ruminococcus torques ATCC 27756]
gi|316898050|gb|EFV20099.1| transcription elongation factor [Lachnospiraceae bacterium
8_1_57FAA]
Length = 167
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 84/143 (58%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +KI++E+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE R+
Sbjct: 4 KLTKSDVEKIREEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKEKNRNESRIRY 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE ++ A +++ + D I TV + ++ + + Y+IV +GLVSI SP
Sbjct: 64 LERMLKTAVIVEDESKE-DEIGLNNTVEVYCEDDEEVETYRIVTSVRGSSLNGLVSIESP 122
Query: 126 IARALIGKELGD--IISVNAPGG 146
+ +AL+G + GD I VN G
Sbjct: 123 LGKALLGHKEGDRVFIKVNDDFG 145
>gi|291619237|ref|YP_003521979.1| GreB [Pantoea ananatis LMG 20103]
gi|291154267|gb|ADD78851.1| GreB [Pantoea ananatis LMG 20103]
Length = 158
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF+ ++ EL +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGFNTLKAELDHLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + ++D S ++ FGA V VE + GD K ++IVG E + +SI SP+
Sbjct: 66 SKSLEQLRIVDYSPQQDGKVFFGAWVE-VENDEGDVKRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ K +GD V P G + + ++ ++
Sbjct: 125 ARALLKKAVGDAAVVETPAGPACWYVNEISYV 156
>gi|313201051|ref|YP_004039709.1| transcription elongation factor greb [Methylovorus sp. MP688]
gi|312440367|gb|ADQ84473.1| transcription elongation factor GreB [Methylovorus sp. MP688]
Length = 164
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ ++ E + ERP+++ +S A + GD SEN +Y K + R+ L
Sbjct: 8 ITPEGYATLKAEFEQLYKIERPKVVSDVSWAASNGDRSENGDYIYGKRRLRQIDSRLRFL 67
Query: 67 ENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A ++D S +++ FGA VSL + +Y+IVG E D G +S SP
Sbjct: 68 MKSMDLAVIVDPKEQQSLEKVFFGAWVSLYSLERDIEHHYRIVGQNELDPTRGYISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ARA++GK++GD++ P GE++YEI+ +
Sbjct: 128 LARAMLGKQIGDVVRAQTPAGEESYEIIDI 157
>gi|253998948|ref|YP_003051011.1| transcription elongation factor GreB [Methylovorus sp. SIP3-4]
gi|253985627|gb|ACT50484.1| transcription elongation factor GreB [Methylovorus sp. SIP3-4]
Length = 169
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 1/150 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ ++ E + ERP+++ +S A + GD SEN +Y K + R+ L
Sbjct: 13 ITPEGYATLKAEFEQLYKIERPKVVSDVSWAASNGDRSENGDYIYGKRRLRQIDSRLRFL 72
Query: 67 ENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A ++D S +++ FGA VSL + +Y+IVG E D G +S SP
Sbjct: 73 MKSMDLAVIVDPKEQQSLEKVFFGAWVSLYSLERDIEHHYRIVGQNELDPTRGYISWISP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ARA++GK++GD++ P GE++YEI+ +
Sbjct: 133 LARAMLGKQIGDVVRAQTPAGEESYEIIDI 162
>gi|108758975|ref|YP_631387.1| transcription elongation factor GreB [Myxococcus xanthus DK 1622]
gi|108462855|gb|ABF88040.1| transcription elongation factor GreB [Myxococcus xanthus DK 1622]
Length = 176
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/157 (36%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ +EL EERP++ +S A A GD SENAEY K+ + R+ L
Sbjct: 25 LTRAGAERLHRELVHLLNEERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRRLRFL 84
Query: 67 E------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ I+T AE D S R+ FGATVSL E G + YQIVG E D G +
Sbjct: 85 QKRLDTATIVTPAEQTDRS-----RVFFGATVSL-EDEDGGRSTYQIVGSDEIDASGGRI 138
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+ SP+ RAL+ K +GD + V P G+ ++ + +
Sbjct: 139 SVESPMGRALLRKAVGDSVEVRRPRGDIELTVVDIRY 175
>gi|167756790|ref|ZP_02428917.1| hypothetical protein CLORAM_02339 [Clostridium ramosum DSM 1402]
gi|237734508|ref|ZP_04564989.1| transcription elongation factor greA [Mollicutes bacterium D7]
gi|167702965|gb|EDS17544.1| hypothetical protein CLORAM_02339 [Clostridium ramosum DSM 1402]
gi|229382328|gb|EEO32419.1| transcription elongation factor greA [Coprobacillus sp. D7]
Length = 161
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 88/141 (62%), Gaps = 2/141 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K+ +T G +K++QE ERP++I+ + AR+ GDLSENA+Y AA+E Q E R
Sbjct: 4 EKVLLTQSGVEKLEQERDNLINVERPKVIEELQLARSQGDLSENADYDAAREKQAHLESR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD--KKNYQIVGDQEADVQSGLV 120
+ E++ ++ AEVI M + G TV++++ + D ++YQIVG E D +G +
Sbjct: 64 IKEIDYMLQNAEVISEEQMDLKVVKPGTTVTILDLSEKDAEPESYQIVGYTETDPLNGKI 123
Query: 121 SISSPIARALIGKELGDIISV 141
S SP+A+A++G + +I++V
Sbjct: 124 SNESPLAKAVLGHGVNEIVTV 144
>gi|160938130|ref|ZP_02085486.1| hypothetical protein CLOBOL_03024 [Clostridium bolteae ATCC
BAA-613]
gi|158438934|gb|EDP16690.1| hypothetical protein CLOBOL_03024 [Clostridium bolteae ATCC
BAA-613]
Length = 167
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 84/135 (62%), Gaps = 1/135 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY+AAK+ +N NE R+ L
Sbjct: 5 LTANDIKKMQEEIEYRKLVVRREALEAVKEARAHGDLSENFEYKAAKQDKNRNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A +I ++ G+ + G TV + + + + Y++V + GL+SI SP+
Sbjct: 65 EKMIKTARIISNNSREGE-VGLGDTVEVYIPDDDETERYKLVTTVRGNSLQGLISIDSPL 123
Query: 127 ARALIGKELGDIISV 141
+A+ G+++GD + V
Sbjct: 124 GKAIRGRKMGDKVYV 138
>gi|225181739|ref|ZP_03735178.1| transcription elongation factor GreA [Dethiobacter alkaliphilus AHT
1]
gi|225167610|gb|EEG76422.1| transcription elongation factor GreA [Dethiobacter alkaliphilus AHT
1]
Length = 156
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 93/156 (59%), Gaps = 2/156 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV K + +T G +K+++EL + + +R + I A ++GD+SEN+EY+ AK Q
Sbjct: 1 MVSKEVILTQGGLEKLEKELDYLKSTKRREVADRIKTAISFGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ ++I+ T S + ++ G+TV L + + Y IVG EA+
Sbjct: 61 EGRIITLEKMLRNVKLINEETDS-ETVSVGSTVILKDLEFDEDFEYTIVGSAEANPAENK 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +A++GK+L D++ V+ P G Y+I+++
Sbjct: 120 ISNESPVGKAILGKKLNDVVEVSVPAGILKYQIVKI 155
>gi|323465752|gb|ADX69439.1| Transcription elongation factor [Lactobacillus helveticus H10]
Length = 153
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 86/149 (57%), Gaps = 3/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK + R+ L
Sbjct: 7 MTPEGYKQIEDEI-VRLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ AE++ T ++ +G TV L + + + Y+IVG EAD+ G +S SP+
Sbjct: 66 GKQLKYAEIV--KTTDDGKVDWGKTVVLKFDDDDETEEYKIVGHMEADLADGKISFDSPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++ +E G + +V AP GE I++V
Sbjct: 124 GQAIMKQEAGGVATVEAPAGEYKVTIVEV 152
>gi|291551193|emb|CBL27455.1| transcription elongation factor GreA [Ruminococcus torques L2-14]
Length = 160
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 82/149 (55%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G I+ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ EL
Sbjct: 9 LTYAGLKAIEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + ++I G V + + ++ ++IVG EA+ G +S SP+
Sbjct: 69 EAILKNAEVVVEDEVDLNKINVGCAVKVYDITFDEEMEFKIVGSTEANSLEGKISNESPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ALIGK++ D++ V G Y++L +
Sbjct: 129 GHALIGKKINDVVDVETQAGVIQYKVLDI 157
>gi|120556642|ref|YP_960993.1| transcription elongation factor GreB [Marinobacter aquaeolei VT8]
gi|120326491|gb|ABM20806.1| transcription elongation factor GreB [Marinobacter aquaeolei VT8]
Length = 171
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 85/143 (59%), Gaps = 3/143 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T +G ++ EL++ + +RP + +A+ EA A GD SENAEY K+L+ ++ R+
Sbjct: 15 ITPEGEQALRDELQFLWKVKRPEVTQAVREAAALGDRSENAEYIYGKKQLREIDR-RVRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V+D R+ F A V+ +E G ++ Y+IVG E D++ G +SI+SP
Sbjct: 74 LSKRLDEVSVVDRLPEDRSRVFFAAWVT-IEDEDGSEQEYRIVGADEFDLEKGYLSINSP 132
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ARALIGK L D +SV P G K
Sbjct: 133 LARALIGKHLDDEVSVRTPEGWK 155
>gi|313895523|ref|ZP_07829079.1| transcription elongation factor GreA [Selenomonas sp. oral taxon
137 str. F0430]
gi|312975649|gb|EFR41108.1| transcription elongation factor GreA [Selenomonas sp. oral taxon
137 str. F0430]
Length = 156
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+ +T G++K+ ++L + + R + + + A A GDLSEN+EY AK Q EG +
Sbjct: 5 KVMLTEDGYNKLVEKLNYLKSVRRIEVAERLKAAIALGDLSENSEYDDAKNEQAFLEGEI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELEN I +++ I G + G+ V++ + + + + IVG EAD G +S
Sbjct: 65 QELENKIRNSDI--IKAGDGKSVTIGSRVTVKDLEFDEDETFLIVGSTEADPDEGKISNE 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ AL+G+++G +I+V+AP G Y+I+ +
Sbjct: 123 SPLGMALLGQKIGKVINVSAPAGMIRYKIVDI 154
>gi|297566642|ref|YP_003685614.1| transcription elongation factor GreA [Meiothermus silvanus DSM
9946]
gi|296851091|gb|ADH64106.1| transcription elongation factor GreA [Meiothermus silvanus DSM
9946]
Length = 159
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 91/153 (59%), Gaps = 1/153 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T++G ++Q EL + +R I A +A GDL ENA Y A+ Q N+ R++
Sbjct: 7 VYLTAEGLKRLQDELTTLKTVKRQEIAAAFEQAIEEGDLRENAGYDEARRAQWDNDRRIS 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELE+I+ RA V++ + + G +V L E ++G + + IVG EADV +G +S S
Sbjct: 67 ELESILARAVVVEAGNGTPLEVGLGVSVEL-ETDTGARMSLTIVGSHEADVFNGKISNES 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ + L+GK++GD + +P G ++Y I+++ +
Sbjct: 126 PMGQRLMGKKVGDRVEYPSPKGVQSYTIVELSY 158
>gi|149378112|ref|ZP_01895832.1| transcription elongation factor GreB [Marinobacter algicola DG893]
gi|149357597|gb|EDM46099.1| transcription elongation factor GreB [Marinobacter algicola DG893]
Length = 156
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 95/151 (62%), Gaps = 5/151 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ ++QQEL + ++ERP + K + A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITPEGYAELQQELDYLWRKERPEVTKKVQWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSGLVSISS 124
N +++ V++ +++ ++ FGA V+LV++ D+K ++++VG E + VS+++
Sbjct: 66 RNRLSKLRVVEYNSVQEGKVYFGAWVTLVDE---DEKTLSFRMVGPDEIYGKKNYVSVNA 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+A+A +GK +GD + V P ++ ++I ++
Sbjct: 123 PVAKACLGKSVGDTVVVRTPENQREWDISKI 153
>gi|222056183|ref|YP_002538545.1| transcription elongation factor GreB [Geobacter sp. FRC-32]
gi|221565472|gb|ACM21444.1| transcription elongation factor GreB [Geobacter sp. FRC-32]
Length = 161
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G ++++E + + ERPR+ +A+S+A A GD SENAEY K+ + R+ L
Sbjct: 7 ITPEGARRLREEFEYLWKVERPRVTQAVSDAAAEGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V++ +I FGA V L E G++ Y+IVG E D G +S+ SP+
Sbjct: 67 MKRLDVLTVVEDQPERKGKIFFGAWVRL-ENEEGNEVVYRIVGPDEFDPGKGYISVDSPM 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ALIGK+ GD + V P G T+ I+ V
Sbjct: 126 AKALIGKQEGDEVVVRRPAGVATFTIIDV 154
>gi|58040290|ref|YP_192254.1| transcription elongation factor GreB [Gluconobacter oxydans 621H]
gi|58002704|gb|AAW61598.1| Transcription elongation factor GreB [Gluconobacter oxydans 621H]
Length = 168
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 93/162 (57%), Gaps = 6/162 (3%)
Query: 1 MVDKIPVTS----KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQ 56
M +K P++ KG ++ EL+ Q+ERPRI++ +S A GD SENA+YQ K
Sbjct: 1 MAEKTPLSHYLSPKGAVVMRAELKELAQKERPRIVEIVSWAAGNGDRSENADYQYGKRRL 60
Query: 57 NLNEGRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
+ RM L + A ++D + + DR+ FGATV+ V+++ + I+G E+D+
Sbjct: 61 REIDRRMRFLGKRLENAVIVDPAAQTTRDRVFFGATVTYVDEDDVE-HTVTILGVDESDL 119
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
G VS+ SP+ARAL+ +GD+ + P G EIL++++
Sbjct: 120 ARGEVSLMSPVARALMRTRVGDVAMLQTPRGPVEIEILKIVY 161
>gi|302388756|ref|YP_003824577.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM
16646]
gi|302199384|gb|ADL06954.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM
16646]
Length = 158
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 89/151 (58%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T +G K+++EL + + +R + I +A ++GDLSEN+EY AK Q EG++A
Sbjct: 6 VVLTQEGLRKLEKELEYLKSVKRKEVADRIKQAISFGDLSENSEYDEAKNEQAFVEGKIA 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE + A+VID + +S + + G+ V + + ++ + Y IV EA+ +S S
Sbjct: 66 MLEEKLRNAKVIDDADISTETVTLGSKVLIRDLDTEEAIEYTIVSSAEANPIDFKISNES 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ +AL+G + GD+I ++ P G+ Y + ++
Sbjct: 126 PVGKALMGAKKGDVIEISVPAGQVRYRVEEI 156
>gi|238855578|ref|ZP_04645880.1| transcription elongation factor GreA [Lactobacillus jensenii 269-3]
gi|260664770|ref|ZP_05865621.1| transcription elongation factor GreB [Lactobacillus jensenii
SJ-7A-US]
gi|282932736|ref|ZP_06338144.1| transcription elongation factor GreA 1 [Lactobacillus jensenii
208-1]
gi|238831795|gb|EEQ24130.1| transcription elongation factor GreA [Lactobacillus jensenii 269-3]
gi|260561253|gb|EEX27226.1| transcription elongation factor GreB [Lactobacillus jensenii
SJ-7A-US]
gi|281303146|gb|EFA95340.1| transcription elongation factor GreA 1 [Lactobacillus jensenii
208-1]
Length = 153
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 91/147 (61%), Gaps = 7/147 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T +G+ I++E++ ++ RP IKA+ EAR+ GDLSEN+EY +A KEL++L E R+
Sbjct: 7 MTPQGYKLIEEEIK-NLKKSRPIKIKALQEARSLGDLSENSEYTEAKKELRHL-ESRLRY 64
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + AE+I + ++ G V L ++ Y+IVG EAD+++G +S SP
Sbjct: 65 LDKQLKYAEII--TPNDDKKVDLGKKVKLRFEDDETSDTYEIVGRLEADLEAGKISFDSP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ A++ KE G ++V AP G +YE+
Sbjct: 123 LGVAIMKKEAGSCVTVEAPAG--SYEV 147
>gi|313897330|ref|ZP_07830873.1| transcription elongation factor GreA [Clostridium sp. HGF2]
gi|312957700|gb|EFR39325.1| transcription elongation factor GreA [Clostridium sp. HGF2]
Length = 159
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K VT +G D++ +E R +I+ + EARA GDLSENA+Y AA++ Q E R
Sbjct: 4 EKFLVTKEGLDELLKEQDNLIHVVRDEVIRELQEARAQGDLSENADYDAARDRQARVEAR 63
Query: 63 MAELENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ +LE +I AE+I D + ++ G+TV++++ ++ +++ Y IVG EAD +G +
Sbjct: 64 IRDLEAMIANAEIISEDKKAATKKTVSLGSTVTILDMSTNEEETYNIVGSIEADPLNGKL 123
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152
S +P+A +L+ ++GD++ + E+ Y++
Sbjct: 124 SNITPLATSLMDHKIGDVVEIET--AEEPYQV 153
>gi|329297354|ref|ZP_08254690.1| transcription elongation factor GreB [Plautia stali symbiont]
Length = 211
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 3/146 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++ E E+RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYNKLRAEHDHLWNEKRPEITRIVSWAASLGDRSENADYTYNKRLLRQIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ +++D + ++ FGA V VE GD K ++IVG E D +SI S
Sbjct: 66 RKCLAELKIVDYAPQQEGKVFFGAWVE-VENEQGDVKRFRIVGPDEIYGDTVKDYISIDS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTY 150
P+ARALI KE+ + ++VN P G+K +
Sbjct: 125 PMARALIKKEVDEEVTVNTPEGQKVW 150
>gi|319775510|ref|YP_004137998.1| transcription elongation factor [Haemophilus influenzae F3047]
gi|329122448|ref|ZP_08251035.1| transcription elongation factor GreB [Haemophilus aegyptius ATCC
11116]
gi|317450101|emb|CBY86315.1| transcription elongation factor [Haemophilus influenzae F3047]
gi|327473730|gb|EGF19149.1| transcription elongation factor GreB [Haemophilus aegyptius ATCC
11116]
Length = 162
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ + QEL++ +EER ++ +A+S+A A GD SENAEY K + R+ L
Sbjct: 7 ITRQGWLALDQELKFLWKEERSKVTQAVSDAAALGDRSENAEYIYGKRRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V L E G+ K Y+IVG E +SI SP+
Sbjct: 67 TKRLEVLQIVDYNPKQEGKVFFGAWVEL-ENEEGETKQYRIVGCDEFAPAKNWISIDSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
ARALIGK L D + V P G
Sbjct: 126 ARALIGKTLDDEVRVETPSG 145
>gi|312882877|ref|ZP_07742609.1| transcription elongation factor GreB [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369396|gb|EFP96916.1| transcription elongation factor GreB [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 162
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++ E + E RP + K ++ A GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYNKLKAEHDYLWHERRPEVTKIVTWAAGLGDRSENADYTFNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ ++D S ++ FGA V +E ++GD K ++IVG +E D + +SI S
Sbjct: 66 RKFLPEVTIVDYSPQQEGKVFFGAWVE-IENDAGDTKKFRIVGPEEIYGDAKE-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ KE+ D V+ P GEK + I
Sbjct: 124 PMARALLKKEVDDEFVVHTPEGEKEWFI 151
>gi|169350015|ref|ZP_02866953.1| hypothetical protein CLOSPI_00755 [Clostridium spiroforme DSM 1552]
gi|169293228|gb|EDS75361.1| hypothetical protein CLOSPI_00755 [Clostridium spiroforme DSM 1552]
Length = 161
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 88/141 (62%), Gaps = 2/141 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K+ +T G +K++QE ERP++I+ + AR+ GDLSENA+Y AA+E Q E R
Sbjct: 4 EKVLLTQSGLEKLEQERDRLINVERPKVIEELQLARSQGDLSENADYDAAREKQAHLESR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD--KKNYQIVGDQEADVQSGLV 120
+ E++ ++ E+I M + G TV++++ + D ++Y+IVG E D +G +
Sbjct: 64 IKEIDYMLQNVEIISEDQMDLKVVKPGTTVTILDLSETDAEPESYKIVGFTETDPLNGKI 123
Query: 121 SISSPIARALIGKELGDIISV 141
S SP+A+A+IG ++ +I++V
Sbjct: 124 SNESPLAKAVIGHDVNEIVTV 144
>gi|300362488|ref|ZP_07058664.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03]
gi|300353479|gb|EFJ69351.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03]
Length = 153
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
MV +T +G+ +I+ E+ R +++RPR IK + EAR+ GDLSEN+EY AK EL +L
Sbjct: 1 MVYYQKMTPEGYQEIKDEI-ARLKKDRPRRIKILQEARSMGDLSENSEYTTAKMELGHL- 58
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ R+ L+ + +E+I SG I G+ V L+ + D + Y+IVG EAD+ G
Sbjct: 59 QSRLRYLDKQLRYSEIIQ-KDKSGT-IDLGSNVKLLFEGDDDAEEYRIVGRMEADLTKGK 116
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +AL+ ++ G ++V AP G +I+ V
Sbjct: 117 ISFDSPLGQALMKQKAGATVTVEAPAGSYDVKIIAV 152
>gi|323485861|ref|ZP_08091196.1| transcription elongation factor [Clostridium symbiosum WAL-14163]
gi|323693200|ref|ZP_08107418.1| transcription elongation factor [Clostridium symbiosum WAL-14673]
gi|323400849|gb|EGA93212.1| transcription elongation factor [Clostridium symbiosum WAL-14163]
gi|323502683|gb|EGB18527.1| transcription elongation factor [Clostridium symbiosum WAL-14673]
Length = 160
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 84/149 (56%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G + + EL+ + +R I + I EAR GDLSENAEY AAK+ Q E R+ L
Sbjct: 8 LTYAGLKQYEDELQDLKVNKRREIAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEAL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ AEV+ + D+I+ G V L++ ++ ++IVG EA+ +S SP+
Sbjct: 68 EKLLKNAEVVVEDEIDLDKISVGCKVKLLDVEEDEEMEFKIVGSTEANSLQNKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL+GK+ G+ + V G Y+IL++
Sbjct: 128 GHALLGKKEGETVQVETQAGMIHYKILEI 156
>gi|116332834|ref|YP_794361.1| transcription elongation factor GreA [Lactobacillus brevis ATCC
367]
gi|116098181|gb|ABJ63330.1| transcription elongation factor GreA [Lactobacillus brevis ATCC
367]
Length = 160
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 92/151 (60%), Gaps = 5/151 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMA 64
P+T+ G+ +Q ++ + +RP I ++EARA+GDLSENAEY AAK +L++L E ++
Sbjct: 9 PITAAGYQDLQAKIA-ALEADRPEKIAILAEARAHGDLSENAEYSAAKRDLRHL-ESQLR 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ A+V+ S + D + G V++ + ++ YQ+VG QEAD+ +G ++ S
Sbjct: 67 FYTKQLQYAKVVAPS--NSDVVDLGKWVTVTFLDDHEQATYQLVGTQEADLAAGKITRVS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ +AL+G GD ++++AP +I QV
Sbjct: 125 PLGKALLGHHPGDTVTISAPHANYRVKINQV 155
>gi|225389819|ref|ZP_03759543.1| hypothetical protein CLOSTASPAR_03567 [Clostridium asparagiforme
DSM 15981]
gi|225044129|gb|EEG54375.1| hypothetical protein CLOSTASPAR_03567 [Clostridium asparagiforme
DSM 15981]
Length = 160
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + T G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKHILTYAGLKQYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ELE ++ AEV+ + D+I G V L++ ++ Y IVG EA+
Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDTDKINIGCKVKLLDVEFDEEMEYFIVGSTEANSLQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ AL+GK +G+ + V G Y++L +
Sbjct: 121 ISNESPVGHALLGKGVGETVDVETQAGTIQYKVLNI 156
>gi|328463913|gb|EGF35431.1| transcription elongation factor GreA [Lactobacillus helveticus MTCC
5463]
Length = 153
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK + R+ L
Sbjct: 7 MTPEGYKQIEDEI-ARLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ AE++ T ++ G TV L + + + Y+IVG EAD+ G +S SP+
Sbjct: 66 GKQLKYAEIV--KTTDDGKVDCGKTVVLKFDDDDETEEYKIVGRMEADLADGKISCDSPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++ +E G + +V AP GE I++V
Sbjct: 124 GQAIMKQEAGGVATVEAPAGEHKVTIVEV 152
>gi|291458829|ref|ZP_06598219.1| transcription elongation factor GreA [Oribacterium sp. oral taxon
078 str. F0262]
gi|291418083|gb|EFE91802.1| transcription elongation factor GreA [Oribacterium sp. oral taxon
078 str. F0262]
Length = 167
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +I +E+ R+ RP++I+A+ EAR++GDLSEN EY AAK N NE R+A L
Sbjct: 5 LTKADVKRIWEEIEKRKLSLRPKLIEAVKEARSHGDLSENFEYYAAKREMNQNESRIAYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A ++ + D + TV L+ + G++++Y+IV S L+S SP+
Sbjct: 65 ERMLRFATIVSDRS-ERDEVGLNDTVRLLFEEEGEEESYRIVTSIRGHSLSNLISNKSPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
+AL+ +GD ++V PGG K+Y +
Sbjct: 124 GKALLKHRVGDRVTVR-PGGGKSYTV 148
>gi|153828361|ref|ZP_01981028.1| transcription elongation factor GreB [Vibrio cholerae 623-39]
gi|229513643|ref|ZP_04403107.1| transcription elongation factor GreB [Vibrio cholerae TMA 21]
gi|229521789|ref|ZP_04411207.1| transcription elongation factor GreB [Vibrio cholerae TM 11079-80]
gi|229527359|ref|ZP_04416751.1| transcription elongation factor GreB [Vibrio cholerae 12129(1)]
gi|261211278|ref|ZP_05925567.1| transcription elongation factor GreB [Vibrio sp. RC341]
gi|262166724|ref|ZP_06034461.1| transcription elongation factor GreB [Vibrio mimicus VM223]
gi|148876191|gb|EDL74326.1| transcription elongation factor GreB [Vibrio cholerae 623-39]
gi|229334991|gb|EEO00476.1| transcription elongation factor GreB [Vibrio cholerae 12129(1)]
gi|229341383|gb|EEO06387.1| transcription elongation factor GreB [Vibrio cholerae TM 11079-80]
gi|229349520|gb|EEO14476.1| transcription elongation factor GreB [Vibrio cholerae TMA 21]
gi|260839779|gb|EEX66390.1| transcription elongation factor GreB [Vibrio sp. RC341]
gi|262026440|gb|EEY45108.1| transcription elongation factor GreB [Vibrio mimicus VM223]
Length = 160
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
++ +++D S ++ FGA V +E +GD K ++IVG +E D + +SI S
Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGDVKKFRIVGPEEIYGDAKD-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ K++ + V+ P G K + I
Sbjct: 124 PMARALLKKQVDEEFQVHTPTGMKEWFI 151
>gi|162147888|ref|YP_001602349.1| transcription elongation factor greB [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786465|emb|CAP56047.1| putative transcription elongation factor greB [Gluconacetobacter
diazotrophicus PAl 5]
Length = 199
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G ++ EL ++ERPRI+ +S A GD SEN +Y K+ + R+ L
Sbjct: 42 VTPAGMAAMRGELNALLRDERPRIVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRFL 101
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I +A V+D + + DR+ FGATV+ V ++ ++ IVG E+D+ +G VS++SP
Sbjct: 102 TRRIEKAIVVDPAAQTRRDRVFFGATVTYVTEDD-TERTVVIVGVDESDLAAGQVSLASP 160
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+G +GD + + P G + EIL++ +
Sbjct: 161 VARALLGGRVGDEVRLLTPAGAEMIEILRIAY 192
>gi|298245773|ref|ZP_06969579.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM
44963]
gi|297553254|gb|EFH87119.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM
44963]
Length = 172
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/158 (35%), Positives = 91/158 (57%), Gaps = 7/158 (4%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T +G+ K ++ L + + +R + EA+ GD+SE++ Y+ AK Q EG +
Sbjct: 16 VRLTPQGYTKNKERLDYLRNVKRREAADYVHEAKEAGDISESSAYEDAKNEQAKVEGEII 75
Query: 65 ELENIITRAEVIDISTMSGDR----IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
ELE+++ AEVI ++ DR + G V L E SG K+ ++IV EAD +SGL+
Sbjct: 76 ELEHLLAVAEVITPESL--DRHDGTVRIGMKVEL-ESESGAKRVFKIVETYEADPKSGLI 132
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SP+ +AL+G + GD ++V PGG Y IL + +
Sbjct: 133 SDQSPVGKALMGHKEGDEVTVTTPGGVTGYTILSITTM 170
>gi|74316538|ref|YP_314278.1| transcription elongation factor GreB [Thiobacillus denitrificans
ATCC 25259]
gi|74056033|gb|AAZ96473.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC
25259]
Length = 187
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ E + ERP++++ IS A + GD SEN +Y K+ + R+ L
Sbjct: 33 MTPAGYARLDAEFNQLWKVERPKLVETISWAASNGDRSENGDYIYGKKRLREVDRRIRFL 92
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D +T + D++ FGATV++ + + G + Y IVG EAD G ++ SP
Sbjct: 93 SKRLEHAEVVDPATRAATDQVFFGATVTVADAD-GSESTYAIVGLDEADASRGRIAWMSP 151
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARAL+ GD + V P G + EI++V ++
Sbjct: 152 MARALLKAREGDTVVVQTPDGRREVEIIEVRYV 184
>gi|262376606|ref|ZP_06069834.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145]
gi|262308316|gb|EEY89451.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145]
Length = 164
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K++ + R+ L
Sbjct: 6 ITRAGHDKLVAELKNLWHEERPEITKKVNWAASLGDRSENADYQYNKQILRKIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125
+ ++ID S ++ FGA V +E G++K +IVG D+ D +SISSP
Sbjct: 66 GKRLEELKIIDFSPEQEGKVYFGAWVE-IENEEGEQKTLRIVGVDEIYDHHPQHISISSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+GK++ D V P G+K + I
Sbjct: 125 MARALLGKQVDDEAEVLTPSGKKLWFI 151
>gi|262199269|ref|YP_003270478.1| transcription elongation factor GreB [Haliangium ochraceum DSM
14365]
gi|262082616|gb|ACY18585.1| transcription elongation factor GreB [Haliangium ochraceum DSM
14365]
Length = 173
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 83/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++EL ERPR+ + +++A A GD SENAEY K + R+ L
Sbjct: 15 ITPEGARVLREELEQLWLVERPRVTQEVADAAAQGDRSENAEYIYGKRRLREIDRRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ R+ FGA V+L + G + Y+IVG E DV +G +S+ +P+
Sbjct: 75 GKRLDSLTVVSEPPSDPKRVFFGAWVTLEDDEDGKEVVYRIVGPDEFDVSAGKISMDAPV 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
RAL+GK GD ++V P GE Y I++V +
Sbjct: 135 GRALLGKREGDEVTVKRPKGEVVYTIVEVRY 165
>gi|197117113|ref|YP_002137540.1| transcription elongation factor GreA/GreB domain-containing protein
[Geobacter bemidjiensis Bem]
gi|197086473|gb|ACH37744.1| transcription elongation factor GreA/GreB domain protein [Geobacter
bemidjiensis Bem]
Length = 158
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 94/152 (61%), Gaps = 8/152 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
++++G ++Q+ + + ERPR++K +++A A GD SENAEY + K L+ ++ E
Sbjct: 6 ISAEGRKRLQERYDFLWETERPRMVKNMADAAAEGDRSENAEYIYSKKRLREIDR----E 61
Query: 66 LENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L ++ R +V+ + ++ ++FG VS E G+++ YQ+VG E DV +G +S+
Sbjct: 62 LRHLGDRLKVVKVVYPPLNPSTVSFGCWVSY-EDEEGEERCYQLVGPDEFDVTAGKISVD 120
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +AL+G+++ D I++ P G+ T I+ +
Sbjct: 121 SPVGKALLGRKVDDEITIKRPAGDLTVTIVAI 152
>gi|311778834|gb|ADQ08317.2| transcription elongation factor [Mycoplasma hyorhinis HUB-1]
gi|330723604|gb|AEC45974.1| transcription elongation factor GreA [Mycoplasma hyorhinis MCLD]
Length = 164
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 86/140 (61%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++I +T + + ++EL ER ++I I AR GDLSENAEY AA+E Q + E R
Sbjct: 8 EEIFLTKESLESYKKELNQLINVERNKVIDEIKSAREQGDLSENAEYDAAREKQGIIEAR 67
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+E+I+++A++I+ + + D I G+ VS++ + N QIVG +A+ +S
Sbjct: 68 ILEIESILSKAKLIENTGLKSDEITIGSKVSILNLKTQTSHNVQIVGSLDANPFQNKISN 127
Query: 123 SSPIARALIGKELGDIISVN 142
SP+A ALIG++ G+ + ++
Sbjct: 128 LSPLASALIGRKAGEEVEID 147
>gi|307298990|ref|ZP_07578792.1| GreA/GreB family elongation factor [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306915415|gb|EFN45800.1| GreA/GreB family elongation factor [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 157
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 9/155 (5%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T +GF+ +++EL +++ I + I EAR GDLSEN+EY AK Q + R+
Sbjct: 6 IYLTQEGFNGMKEELESLRKKLMYDIAERIKEARELGDLSENSEYDEAKNEQGRIDSRIK 65
Query: 65 ELENIITRAEVI----DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+LE I+ AE+I D+ST + G V L+ ++ +K ++IV QEA++ G +
Sbjct: 66 QLEEILNNAEIIEDDGDLST-----VKLGYVVELLNIDTNEKSQFRIVNAQEANIFEGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI R ++ ++ +++ V P G Y+IL +
Sbjct: 121 SSDSPIGRGVLTHKVNEVVRVKTPAGWAKYKILTI 155
>gi|54307404|ref|YP_128424.1| transcription elongation factor GreB [Photobacterium profundum SS9]
gi|46911824|emb|CAG18622.1| putative transcription elongation factor GreB [Photobacterium
profundum SS9]
Length = 156
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 85/144 (59%), Gaps = 1/144 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK+++EL + +EERP I K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYDKLKKELDFLWREERPEITKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+D S ++ FGA V +E ++K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEIVKVVDYSPQQDGKVFFGAFVE-IENEEAEQKAFRIVGPDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTY 150
ARAL+ KE+ + V P G+K +
Sbjct: 125 ARALLKKEVDEEFEVVTPQGKKLW 148
>gi|295425713|ref|ZP_06818400.1| transcription elongation factor GreA [Lactobacillus amylolyticus
DSM 11664]
gi|295064729|gb|EFG55650.1| transcription elongation factor GreA [Lactobacillus amylolyticus
DSM 11664]
Length = 153
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 89/155 (57%), Gaps = 3/155 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ KI+ E+ R +++RPR IK + +AR+ GDLSEN EY AK +
Sbjct: 1 MVYYQKMTPEGYKKIEDEI-ARLKKDRPRRIKILQQARSMGDLSENTEYTEAKRDLGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + AEVI+ ++ G+TV L + + YQIVG EAD+ G
Sbjct: 60 SRLRYLGKQLKYAEVIEAKNYG--KVNMGSTVVLKFDDDEKTEEYQIVGRMEADLAKGKT 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ SP+ +A++ ++ G ++V+AP G+ + I++V
Sbjct: 118 AFDSPLGQAIMKQQAGSTVTVSAPAGDYSVTIVEV 152
>gi|91791609|ref|YP_561260.1| transcription elongation factor GreB [Shewanella denitrificans
OS217]
gi|91713611|gb|ABE53537.1| transcription elongation factor GreB [Shewanella denitrificans
OS217]
Length = 166
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 4/153 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K+ EL + +E RP I K ++ A + GD SENA+Y+ K L +GR+ L
Sbjct: 12 ITAEGLAKLTHELNYLWREYRPEITKKVAWAASLGDRSENADYKENKRLLRQIDGRVRFL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
I +V+ + ++ FGA V +E + G KK ++IVG E D + G +SI S
Sbjct: 72 RKRIEALKVVPYAAEQEGKVFFGAWVE-IENDEGVKKRFRIVGPDEIYGDAK-GYISIDS 129
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL+ KE+ D SV P GE+ + I ++ +
Sbjct: 130 PMARALLKKEVDDDASVLTPTGEQFWYINKIFY 162
>gi|260886921|ref|ZP_05898184.1| transcription elongation factor GreA [Selenomonas sputigena ATCC
35185]
gi|330839288|ref|YP_004413868.1| transcription elongation factor GreA [Selenomonas sputigena ATCC
35185]
gi|260863350|gb|EEX77850.1| transcription elongation factor GreA [Selenomonas sputigena ATCC
35185]
gi|329747052|gb|AEC00409.1| transcription elongation factor GreA [Selenomonas sputigena ATCC
35185]
Length = 156
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
++ +T +G+ K+Q++L + + R + + + A A GDLSEN+EY AK Q EG +
Sbjct: 5 RVMLTEEGYKKLQEKLDYLKSVRRIEVSERLKAAIALGDLSENSEYDDAKNEQAFLEGEI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LE I +++I S D + G+TV + + +++ Y +VG EAD +S
Sbjct: 65 LDLEAKIRNSDIIQ-GGASSDTVQMGSTVVVKDVEFDEQETYTLVGSAEADPTEFKISNE 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ A+IGK++GD + V+AP G YE++++
Sbjct: 124 SPVGAAIIGKKVGDRVDVHAPAGIIQYEVVEI 155
>gi|302672112|ref|YP_003832072.1| transcription elongation factor GreA/GreB1 [Butyrivibrio
proteoclasticus B316]
gi|302396585|gb|ADL35490.1| transcription elongation factor GreA/GreB1 [Butyrivibrio
proteoclasticus B316]
Length = 161
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 83/149 (55%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K + EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ L
Sbjct: 8 LTYEGLKKYEDELHELKVVKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEARIEAL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + ++I+ G V + + ++ Y+IVG EA+ G +S SP+
Sbjct: 68 EKILKNAEVVVEEDVDLNKISIGCKVKIKDLEFDEELEYKIVGSSEANSLKGKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ALIG + G +SV G Y++L +
Sbjct: 128 GKALIGAKKGQTVSVETQAGVIKYKVLSI 156
>gi|255318589|ref|ZP_05359822.1| transcription elongation factor GreB [Acinetobacter radioresistens
SK82]
gi|262378815|ref|ZP_06071972.1| transcription elongation factor GreB [Acinetobacter radioresistens
SH164]
gi|255304581|gb|EET83765.1| transcription elongation factor GreB [Acinetobacter radioresistens
SK82]
gi|262300100|gb|EEY88012.1| transcription elongation factor GreB [Acinetobacter radioresistens
SH164]
Length = 159
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 82/147 (55%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G D++ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRAGHDRLVAELQQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125
+ ++D S R+ FGA V +E G++K +IVG D+ D +SI SP
Sbjct: 66 GKRLEELRIVDHSPEQDGRVYFGAWVD-IENEYGEQKTLRIVGVDEIYDHHPQHISIDSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+ K++ D I V P G+K + I
Sbjct: 125 MARALLSKQVNDEIEVMTPSGKKQWYI 151
>gi|209542505|ref|YP_002274734.1| transcription elongation factor GreB [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530182|gb|ACI50119.1| transcription elongation factor GreB [Gluconacetobacter
diazotrophicus PAl 5]
Length = 180
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G ++ EL ++ERPRI+ +S A GD SEN +Y K+ + R+ L
Sbjct: 23 VTPAGMAAMRGELNALLRDERPRIVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRFL 82
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I +A V+D + + DR+ FGATV+ V ++ ++ IVG E+D+ +G VS++SP
Sbjct: 83 TRRIEKAIVVDPAAQTRRDRVFFGATVTYVTEDD-TERTVVIVGVDESDLAAGQVSLASP 141
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+G +GD + + P G + EIL++ +
Sbjct: 142 VARALLGGRVGDEVRLLTPAGAEMIEILRIAY 173
>gi|110005071|emb|CAK99401.1| probable transcription elongation factor grea protein [Spiroplasma
citri]
Length = 156
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 88/142 (61%), Gaps = 2/142 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++I +T +G +++EL RP +I+ + EARA GDLSENA+Y AA+ Q E
Sbjct: 1 MNEEILLTKEGIKDLKEELDNLINVIRPEVIEELKEARAQGDLSENADYDAARNRQAEVE 60
Query: 61 GRMAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E+++T+A E+ ++ + +G I G+TV+ K +IVG EA+
Sbjct: 61 GRIKEIESLLTKAKEIKEVKSKTG-IIKLGSTVTFTNLLINKKYELKIVGAVEANPFENT 119
Query: 120 VSISSPIARALIGKELGDIISV 141
+S SPIA+A+IGK+ GD+I +
Sbjct: 120 ISNESPIAKAIIGKKAGDLIEI 141
>gi|320157698|ref|YP_004190077.1| transcription elongation factor GreB [Vibrio vulnificus MO6-24/O]
gi|319933010|gb|ADV87874.1| transcription elongation factor GreB [Vibrio vulnificus MO6-24/O]
Length = 160
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ +++D + ++ FGA V +E +G+ ++IVG +E D + G +SI S
Sbjct: 66 SKFLPEVKIVDYAPQQEGKVFFGAWVE-IENEAGEVMKFRIVGPEEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ KE+ D + V P G K + I
Sbjct: 124 PMARALLKKEVDDEVQVPTPSGIKEWFI 151
>gi|190575306|ref|YP_001973151.1| transcription elongation factor GreB [Stenotrophomonas maltophilia
K279a]
gi|190013228|emb|CAQ46862.1| putative transcription elongation factor [Stenotrophomonas
maltophilia K279a]
Length = 168
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/151 (37%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T+ G +++ EL WR + RP ++KA++ A A GD SENAEY K+ + R+
Sbjct: 15 ITASGHARLKAELDDLWRVR--RPEVVKALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+D + + FGA V L +SG+ Y+IVG E D G +SI S
Sbjct: 73 YLTKRLESLRVVDTTPTDPLAVFFGAWVELENVDSGETSRYRIVGPDETDAGLGWISIDS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ K L D SV PGG+ T+ ++ V
Sbjct: 133 PLARALLKKRLDDEFSVELPGGQFTFAVISV 163
>gi|310658260|ref|YP_003935981.1| transcription elongation factor [Clostridium sticklandii DSM 519]
gi|308825038|emb|CBH21076.1| transcription elongation factor [Clostridium sticklandii]
Length = 164
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+I +T +GF KI+ EL + R + + I A ++GD+SEN+EY AK Q E R+
Sbjct: 7 EILLTEEGFKKIEDELELLKTVRRKEVAERIKVAISFGDISENSEYDEAKNEQAQLEERI 66
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS----GDKKNYQIVGDQEADVQSGL 119
+LENI+ A +ID S++ + + G+ V + K++ ++ Y IVG EAD
Sbjct: 67 LKLENILRVAVIIDESSIDTNLVTVGSVVKIEFKDALTDEVEEDEYTIVGSAEADPSESK 126
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPI +AL+G+ +GD I V P G +IL++
Sbjct: 127 ISNESPIGKALLGRVVGDEIDVQVPDGISKIKILEI 162
>gi|258510226|ref|YP_003183660.1| transcription elongation factor GreA [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257476952|gb|ACV57271.1| transcription elongation factor GreA [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 158
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T +G K+++EL + +R + + I A +YGD+SEN+EY+ AK Q
Sbjct: 1 MADKEVLLTPEGLRKLEEELELLKSVKRREVAERIKVAISYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE + A VI+ + + ++ G+TV +++ + ++ Y IVG EA+
Sbjct: 61 EGRIMTLEKQLRNARVINEDEVDTNVVSIGSTVKVLDLDLDEEVEYTIVGSAEANPAENK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +AL+GK++G I+ VN P G ++IL++
Sbjct: 121 ISNESPVGKALLGKQIGSIVEVNVPAGVIKFKILEI 156
>gi|227888966|ref|ZP_04006771.1| transcription elongation factor GreA [Lactobacillus johnsonii ATCC
33200]
gi|268318753|ref|YP_003292409.1| Transcription elongation factor greA [Lactobacillus johnsonii
FI9785]
gi|227850554|gb|EEJ60640.1| transcription elongation factor GreA [Lactobacillus johnsonii ATCC
33200]
gi|262397128|emb|CAX66142.1| Transcription elongation factor greA [Lactobacillus johnsonii
FI9785]
Length = 153
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
MV +T +G+ +I+ E+ R +++RPR IK + EAR+ GDLSEN+EY AK EL +L
Sbjct: 1 MVYYQKMTPEGYQEIKDEI-ARLKKDRPRRIKILQEARSMGDLSENSEYTTAKMELGHL- 58
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ R+ L+ + +E+I SG I G+ V+L+ + + Y+IVG EAD+ G
Sbjct: 59 QSRLRYLDKQLRYSEIIQ-KDESGT-IDLGSNVTLLFDGDDEAEKYRIVGRMEADLAKGK 116
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +AL+ K+ G ++V AP G +I+ V
Sbjct: 117 ISFDSPLGQALMKKKAGATVTVEAPAGSYDVKIIAV 152
>gi|116628860|ref|YP_814032.1| transcription elongation factor GreA [Lactobacillus gasseri ATCC
33323]
gi|238852826|ref|ZP_04643231.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4]
gi|282852524|ref|ZP_06261866.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus gasseri 224-1]
gi|311111317|ref|ZP_07712714.1| transcription elongation factor GreA 1 (Transcript cleavage factor
greA 1) [Lactobacillus gasseri MV-22]
gi|116094442|gb|ABJ59594.1| transcription elongation factor GreA [Lactobacillus gasseri ATCC
33323]
gi|238834520|gb|EEQ26752.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4]
gi|282556266|gb|EFB61886.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus gasseri 224-1]
gi|311066471|gb|EFQ46811.1| transcription elongation factor GreA 1 (Transcript cleavage factor
greA 1) [Lactobacillus gasseri MV-22]
Length = 153
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
MV +T +G+ +I+ E+ R +++RPR IK + EAR+ GDLSEN+EY AK EL +L
Sbjct: 1 MVYYQKMTPEGYQEIKDEI-ARLKKDRPRRIKILQEARSMGDLSENSEYTTAKMELGHL- 58
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ R+ L+ + +E+I SG I G+ V L+ + D + Y+IVG EAD+ G
Sbjct: 59 QSRLRYLDKQLRYSEIIQ-KDESGT-IDLGSNVKLLFEGDDDAEEYRIVGRMEADLAKGK 116
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +AL+ ++ G ++V AP G +I+ V
Sbjct: 117 ISFDSPLGQALMKQKAGATVTVQAPAGSYDVKIIAV 152
>gi|154505278|ref|ZP_02042016.1| hypothetical protein RUMGNA_02792 [Ruminococcus gnavus ATCC 29149]
gi|153794476|gb|EDN76896.1| hypothetical protein RUMGNA_02792 [Ruminococcus gnavus ATCC 29149]
Length = 161
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 81/149 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E R+ EL
Sbjct: 9 LTYAGLKALEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + D+I G V + + ++ + IVG E + G +S SP+
Sbjct: 69 EGILKNAEVVVEDEVDLDKINVGCKVKVFDITFDEEMEFNIVGSTEVNSLEGKISNESPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GK++GD + V G Y++L +
Sbjct: 129 GQALMGKKVGDTVDVETQAGVIQYKVLDI 157
>gi|161486671|ref|NP_933028.2| transcription elongation factor GreB [Vibrio vulnificus YJ016]
gi|60392329|sp|Q7MPX6|GREB_VIBVY RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
Length = 160
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ +++D + ++ FGA V +E +G+ ++IVG +E D + G +SI S
Sbjct: 66 SKFLPEVKIVDYAPQQEGKVFFGAWVE-IENEAGEVMKFRIVGPEEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ KE+ D + V P G K + I
Sbjct: 124 PMARALLKKEVDDEVQVPTPSGIKEWFI 151
>gi|239817299|ref|YP_002946209.1| transcription elongation factor GreB [Variovorax paradoxus S110]
gi|239803876|gb|ACS20943.1| transcription elongation factor GreB [Variovorax paradoxus S110]
Length = 190
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 86/152 (56%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL EERP++++A+ A GD SEN +Y K+ + R+ L
Sbjct: 33 MTPAGYARLRDELLQLMDEERPKVVEAVHWAAKNGDRSENGDYLYGKKRLREIDRRIRFL 92
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV D S G D++ FGATV V++ +GD+++ I+G EAD VS SP
Sbjct: 93 TKRLEIAEVTDPSVHHGSDQVFFGATVRYVDE-TGDERSVTILGIDEADSAQSQVSWISP 151
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ GD++ + PGG E+L V +
Sbjct: 152 IARALLKSREGDVVKLVTPGGAHEVELLSVSY 183
>gi|218960396|ref|YP_001740171.1| putative transcription elongation factor [Candidatus Cloacamonas
acidaminovorans]
gi|167729053|emb|CAO79964.1| putative transcription elongation factor [Candidatus Cloacamonas
acidaminovorans]
Length = 159
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 5/153 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++Q+ + ERP +IKA++ AR +GDLSENAEY+AA+E Q + + L
Sbjct: 7 ITKTGMQRLQKRIN-ELLAERPEVIKAVAIAREFGDLSENAEYKAARERQRAIDNEIDYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV--QSGL--VSI 122
+VID S D + FG + N+ + Y +VG +E + + G+ VSI
Sbjct: 66 RRRSANLKVIDTSEFPKDMVRFGTYCVAEDINTKECICYHLVGPEELNYYNEEGIQEVSI 125
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPI +AL+ K++G+I V AP GE+ +I ++
Sbjct: 126 VSPIGKALLSKKIGEIAIVKAPIGERKLKIREI 158
>gi|161501839|ref|NP_759835.2| transcription elongation factor GreB [Vibrio vulnificus CMCP6]
gi|31340138|sp|Q8DDU7|GREB_VIBVU RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|319999141|gb|AAO09362.2| transcription elongation factor GreB [Vibrio vulnificus CMCP6]
Length = 160
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ +++D + ++ FGA V +E +G+ ++IVG +E D + G +SI S
Sbjct: 66 SKFLPEVKIVDYAPQQEGKVFFGAWVE-IENEAGEVMKFRIVGPEEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ KE+ D + V P G K + I
Sbjct: 124 PMARALLKKEVDDEVQVPTPSGIKEWFI 151
>gi|325265032|ref|ZP_08131759.1| transcription elongation factor GreA [Clostridium sp. D5]
gi|324029722|gb|EGB91010.1| transcription elongation factor GreA [Clostridium sp. D5]
Length = 167
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 85/148 (57%), Gaps = 5/148 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DK+ T +KI++E+ R+ R I+A+ EARA+GDLSEN EY AAK+ +N NE
Sbjct: 1 MYDKL--TKSDIEKIREEIEHRKLVVRREAIEAVKEARAHGDLSENFEYHAAKKDKNKNE 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE ++ A ++D T D + TV L + + + Y++V +GL+
Sbjct: 59 SRIRYLERMLKTAVIVD-DTSQEDEVGINNTVELYFEEDDEVETYRLVTSVRGSSINGLI 117
Query: 121 SISSPIARALIGKELGD--IISVNAPGG 146
SI SPI +A++G+++ D + VN G
Sbjct: 118 SIESPIGKAILGRKVNDRVFVKVNEDFG 145
>gi|327485185|gb|AEA79592.1| Transcription elongation factor GreB [Vibrio cholerae LMA3894-4]
Length = 169
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
++ +++D S ++ FGA V +E +GD K ++IVG +E D + +SI S
Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGDVKKFRIVGPEEIYGDAKD-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ K++ + V+ P G K + I
Sbjct: 124 PMARALLKKQVDEEFQVHTPTGIKEWFI 151
>gi|293115788|ref|ZP_05793017.2| transcription elongation factor GreA [Butyrivibrio crossotus DSM
2876]
gi|292808216|gb|EFF67421.1| transcription elongation factor GreA [Butyrivibrio crossotus DSM
2876]
Length = 165
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 85/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL+ + R + + I EAR GDLSENAEY AAK+ Q E R+ E+
Sbjct: 15 MTYEGLKKLEDELQDLKVNRRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV D +G I G+TV++ + ++ +++VG EA +S +P+
Sbjct: 75 EKILKNAEVADDEFGAG-VINLGSTVTVYDCEFDEELVFKLVGSTEAKSLENKISNEAPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ALIGK GD + V P G Y+++ V
Sbjct: 134 GKALIGKVAGDEVEVETPSGIMKYKVINV 162
>gi|37197158|dbj|BAC92999.1| transcription elongation factor [Vibrio vulnificus YJ016]
Length = 185
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 31 ITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 90
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ +++D + ++ FGA V +E +G+ ++IVG +E D + G +SI S
Sbjct: 91 SKFLPEVKIVDYAPQQEGKVFFGAWVE-IENEAGEVMKFRIVGPEEIYGDAK-GYISIDS 148
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ KE+ D + V P G K + I
Sbjct: 149 PMARALLKKEVDDEVQVPTPSGIKEWFI 176
>gi|145300940|ref|YP_001143781.1| transcription elongation factor GreB [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853712|gb|ABO92033.1| transcription elongation factor GreB [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 157
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K+++EL + +EERP + ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYNKLKEELDFLWREERPETTRKVAWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++D + ++ FGA V VE GD K ++IVG E + +SI SP+
Sbjct: 66 RKCLEELGIVDYAPAQEGKVFFGAWVE-VENEEGDTKRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE+GD V P G+ + I
Sbjct: 125 ARALLKKEVGDEAIVPTPVGDACWYI 150
>gi|161506805|ref|YP_001576759.1| transcription elongation factor GreA [Lactobacillus helveticus DPC
4571]
gi|260102224|ref|ZP_05752461.1| transcription elongation factor GreA 1 [Lactobacillus helveticus
DSM 20075]
gi|160347794|gb|ABX26468.1| transcription elongation factor [Lactobacillus helveticus DPC 4571]
gi|260083965|gb|EEW68085.1| transcription elongation factor GreA 1 [Lactobacillus helveticus
DSM 20075]
Length = 153
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK + R+ L
Sbjct: 7 MTPEGYKQIEDEI-ARLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ AE++ T ++ G TV L + + + Y+IVG EAD+ G +S SP+
Sbjct: 66 GKQLKYAEIV--KTTDDGKVDCGKTVVLKFDDDDETEEYKIVGRMEADLADGKISCDSPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++ +E G + +V AP GE I++V
Sbjct: 124 GQAIMKQEAGGVATVEAPAGEYKVTIVEV 152
>gi|114049374|ref|YP_739924.1| transcription elongation factor GreB [Shewanella sp. MR-7]
gi|113890816|gb|ABI44867.1| transcription elongation factor GreB [Shewanella sp. MR-7]
Length = 161
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF+K+ EL +E RP I K ++ A + GD SENA+Y+ K L + R+ L
Sbjct: 8 ITREGFEKLNAELNHLWREYRPEITKKVAWAASLGDRSENADYKENKRLLRQIDSRVRYL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I +V++ S ++ FGA V +E + GD K+++IVG E ++ +SI +P+
Sbjct: 68 RKRIEAVKVVEYSPQQDGKVFFGAWVQ-IENDDGDIKSFRIVGPDEIYGRNDYISIDAPM 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ K + D + V P GE+ + +
Sbjct: 127 ARALLKKAVDDEVIVQTPVGEQMWYV 152
>gi|293400456|ref|ZP_06644601.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305482|gb|EFE46726.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 158
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 86/141 (60%), Gaps = 1/141 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K VT +G D++ +E R +I + EARA GDLSENA+Y AA++ Q E R
Sbjct: 4 EKFYVTKEGLDELLKEQDNLIHVVRDEVILELQEARAQGDLSENADYDAARDHQARVEAR 63
Query: 63 MAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ELE +I AE+I+ S + G+TV++ + +S +++ Y IVG EAD +G +S
Sbjct: 64 IRELEAMIANAEIIEGDKETSSKTVGLGSTVTIKDLSSEEEETYTIVGSIEADPLNGKLS 123
Query: 122 ISSPIARALIGKELGDIISVN 142
+P+A AL+ +LGDI+ V+
Sbjct: 124 NITPLAVALLDNKLGDIVEVS 144
>gi|153802191|ref|ZP_01956777.1| transcription elongation factor GreB [Vibrio cholerae MZO-3]
gi|124122265|gb|EAY41008.1| transcription elongation factor GreB [Vibrio cholerae MZO-3]
Length = 161
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
++ +++D S ++ FGA V +E +GD K ++IVG +E D + +SI S
Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGDVKKFRIVGPEEIYGDAKD-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ K++ + V+ P G K + I
Sbjct: 124 PMARALLKKQVDEEFQVHTPTGIKEWFI 151
>gi|254468751|ref|ZP_05082157.1| transcription elongation factor GreB [beta proteobacterium KB13]
gi|207087561|gb|EDZ64844.1| transcription elongation factor GreB [beta proteobacterium KB13]
Length = 160
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T GF +++EL + +RPR++K +S A + GD SEN +Y K+ + R+ L
Sbjct: 8 LTKNGFIYLREELNHLLKVDRPRVVKDVSWAASNGDRSENGDYIYGKKRLRQIDSRVKYL 67
Query: 67 ENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+I +++ID + + D++ FGATV + QIVG E D + +S SP
Sbjct: 68 LTVIEDSKIIDPLEQENKDKVFFGATVEYENLDKNQINKIQIVGVPEVDPKENKISWLSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+++A++GK++G+I+S +P G+K EI+ +++
Sbjct: 128 LSKAILGKQVGEIVSYESPSGQKEIEIMSIIY 159
>gi|225016228|ref|ZP_03705420.1| hypothetical protein CLOSTMETH_00131 [Clostridium methylpentosum
DSM 5476]
gi|224950986|gb|EEG32195.1| hypothetical protein CLOSTMETH_00131 [Clostridium methylpentosum
DSM 5476]
Length = 163
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 85/149 (57%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K+++EL + +R + I A ++GDLSEN+EY AK Q + E R+A++
Sbjct: 13 LTGEGLSKLEEELEELKTVKRQEVAAKIKVALSFGDLSENSEYDEAKNEQAMVEARIAQV 72
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ V+D S + D ++ G+ V L + + Y IVG EAD G +S SP+
Sbjct: 73 EAMLKNVHVLDDSDLPTDIVSIGSKVLLKDIEFDEDVEYYIVGSTEADPSEGKISDESPV 132
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+G +GD + V P G +E+L++
Sbjct: 133 GKALLGHRVGDRVEVEVPSGMIEFEVLEI 161
>gi|119471395|ref|ZP_01613867.1| transcription elongation factor and transcript cleavage
[Alteromonadales bacterium TW-7]
gi|119445671|gb|EAW26955.1| transcription elongation factor and transcript cleavage
[Alteromonadales bacterium TW-7]
Length = 160
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ ++QQE +RP + K +S A + GD SENA+YQ K L + R+ L
Sbjct: 6 ITREGYLQLQQEHDHLWNVKRPEVTKIVSWAASLGDRSENADYQYNKRLLRQIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I +ID S + ++ FGA V +E GD K ++IVG E + +SI SP+
Sbjct: 66 RKRIPDLNIIDYSPVQDGKVFFGAWVE-IENEQGDIKKFRIVGPDEIYDRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARALI K++ D V P G+K + I
Sbjct: 125 ARALIKKQVDDDFEVMTPQGKKEWYI 150
>gi|54020301|ref|YP_116197.1| transcription elongation factor [Mycoplasma hyopneumoniae 232]
gi|81378424|sp|Q5ZZL8|GREA_MYCH2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|53987474|gb|AAV27675.1| transcription elongation factor [Mycoplasma hyopneumoniae 232]
gi|312601624|gb|ADQ90879.1| Transcription elongation factor greA [Mycoplasma hyopneumoniae 168]
Length = 160
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 4/132 (3%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
ER +I+ I +AR+ GDLSENAEY A+E Q + E R+ ELE II++A++I + + R
Sbjct: 30 ERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESRIRELETIISKAKIIK-ADLGSSR 88
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
++ G+ VSL SG+ + +QIV +AD +S SPIA+AL+G+ GD + V+
Sbjct: 89 VSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISNFSPIAQALLGQHQGDEVEVDV-- 146
Query: 146 GEK-TYEILQVL 156
EK + IL+V+
Sbjct: 147 NEKYSVRILEVI 158
>gi|296533019|ref|ZP_06895667.1| transcription elongation factor GreB [Roseomonas cervicalis ATCC
49957]
gi|296266648|gb|EFH12625.1| transcription elongation factor GreB [Roseomonas cervicalis ATCC
49957]
Length = 174
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +Q+ELR EERP++++ +S A + GD SENA+YQ K + R+ L
Sbjct: 22 MTPSGQAALQEELRALWSEERPKVVEIVSWAASLGDRSENADYQYGKRRLREIDRRVRFL 81
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ R +V+D + + D++ FGA+V+ ++ + + IVG EAD G +S SP
Sbjct: 82 RKRLERVQVVDPAAQTRRDQVFFGASVTYAREDDSE-VSVTIVGIDEADADRGRISWVSP 140
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ +GD++ + P G + E+L + +
Sbjct: 141 VARALLKARIGDLVRIRTPAGPEEVEVLAITY 172
>gi|153825544|ref|ZP_01978211.1| transcription elongation factor GreB [Vibrio cholerae MZO-2]
gi|254285910|ref|ZP_04960872.1| transcription elongation factor GreB [Vibrio cholerae AM-19226]
gi|149740829|gb|EDM54920.1| transcription elongation factor GreB [Vibrio cholerae MZO-2]
gi|150424092|gb|EDN16031.1| transcription elongation factor GreB [Vibrio cholerae AM-19226]
Length = 160
Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
++ +++D S ++ FGA V +E +GD K ++IVG +E D + +SI S
Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGDVKKFRIVGPEEIYGDAKD-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ K++ + V P G K + I
Sbjct: 124 PMARALLKKQVDEEFQVQTPTGMKEWFI 151
>gi|262190726|ref|ZP_06048956.1| transcription elongation factor GreB [Vibrio cholerae CT 5369-93]
gi|262033403|gb|EEY51911.1| transcription elongation factor GreB [Vibrio cholerae CT 5369-93]
Length = 161
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
++ +++D S ++ FGA V +E +GD K ++IVG +E D + +SI S
Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGDVKKFRIVGPEEIYGDAKD-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ K++ + V P G K + I
Sbjct: 124 PMARALLKKQVDEEFQVQTPTGMKEWFI 151
>gi|72080995|ref|YP_288053.1| transcription elongation factor GreA [Mycoplasma hyopneumoniae
7448]
gi|123761607|sp|Q4A759|GREA_MYCH7 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71914119|gb|AAZ54030.1| transcription elongation factor [Mycoplasma hyopneumoniae 7448]
Length = 160
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 4/132 (3%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
ER +I+ I +AR+ GDLSENAEY A+E Q + E R+ ELE II++A++I + + R
Sbjct: 30 ERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESRIRELETIISKAKIIK-ADLGSSR 88
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
++ G+ VSL SG+ + +QIV +AD +S SPIA+AL+G+ GD + V+
Sbjct: 89 VSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISNFSPIAQALLGQHQGDEVEVDV-- 146
Query: 146 GEK-TYEILQVL 156
EK + IL+V+
Sbjct: 147 NEKYSVRILEVI 158
>gi|116747675|ref|YP_844362.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans
MPOB]
gi|116696739|gb|ABK15927.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans
MPOB]
Length = 155
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 83/152 (54%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T G+ ++ +EL + + RP +I+ + EAR G EN +Y A+E + + ++
Sbjct: 2 KVPITRLGYHRLLRELFFLRHVVRPEVIEELQEARTGGIKIENQQYMLARERHMVLQKKI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LE + E++ + FG V + +G+ + YQ+VG E++V G +SI
Sbjct: 62 QDLERKLASCEIVVGRKFFFKQAEFGTIVVIQNIETGETQRYQLVGPYESNVVDGKLSID 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ R L+G+ G+ + V P G + Y ++ +
Sbjct: 122 SPVGRHLVGRREGEEVLVYTPAGVRMYRVVSI 153
>gi|238026489|ref|YP_002910720.1| transcription elongation factor GreB [Burkholderia glumae BGR1]
gi|237875683|gb|ACR28016.1| Transcription elongation factor [Burkholderia glumae BGR1]
Length = 186
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL EERP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLQLIDEERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S S D++ FGATV ++ G++ IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQESTDQVFFGATVDYATED-GEEHTITIVGVDEVDLDRGHVSWVSP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ +GD +++ PGG + ++L V +
Sbjct: 150 IARALLKARIGDTVTLVTPGGPQPVDVLDVRY 181
>gi|302387987|ref|YP_003823809.1| GreA/GreB family elongation factor [Clostridium saccharolyticum
WM1]
gi|302198615|gb|ADL06186.1| GreA/GreB family elongation factor [Clostridium saccharolyticum
WM1]
Length = 167
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 85/148 (57%), Gaps = 5/148 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DK+ T K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE
Sbjct: 1 MFDKL--TENDIKKMQEEIDYRKLVVRKEALEAVKEARAHGDLSENFEYHAAKKDKNQNE 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE +I A++I + D I TV L ++ +++ Y++V + GL+
Sbjct: 59 SRIRYLEKMIKTAQIISDES-KDDEIGLYNTVDLYFEDEDEEETYKLVTTVRGNSMKGLI 117
Query: 121 SISSPIARALIGKELGD--IISVNAPGG 146
+ SP+ +A++G +GD + VN G
Sbjct: 118 TSESPLGKAIMGHRVGDRVYVRVNEKTG 145
>gi|71894015|ref|YP_279461.1| transcription elongation factor GreA [Mycoplasma hyopneumoniae J]
gi|123775457|sp|Q4A921|GREA_MYCHJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71852142|gb|AAZ44750.1| transcription elongation factor [Mycoplasma hyopneumoniae J]
Length = 160
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/132 (41%), Positives = 84/132 (63%), Gaps = 4/132 (3%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
ER +I+ I +AR+ GDLSENAEY A+E Q + E R+ ELE II++A++I + + R
Sbjct: 30 ERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESRIRELETIISKAKIIK-ADLGSSR 88
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
++ G+ VSL SG+ + +QIV +AD +S SPIA+AL+G+ GD + V+
Sbjct: 89 VSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISNFSPIAQALLGQHQGDEVEVDV-- 146
Query: 146 GEK-TYEILQVL 156
EK + IL+V+
Sbjct: 147 NEKYSVRILEVI 158
>gi|58336547|ref|YP_193132.1| transcription elongation factor GreA [Lactobacillus acidophilus
NCFM]
gi|227903098|ref|ZP_04020903.1| transcription elongation factor GreA [Lactobacillus acidophilus
ATCC 4796]
gi|58253864|gb|AAV42101.1| transcriptional elongation factor [Lactobacillus acidophilus NCFM]
gi|227869084|gb|EEJ76505.1| transcription elongation factor GreA [Lactobacillus acidophilus
ATCC 4796]
Length = 153
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 87/149 (58%), Gaps = 3/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +I+ E+ R +++RPR IK + +ARA GDLSEN EY AK + R+ L
Sbjct: 7 MTPEGYKQIEDEI-ARLKKDRPRRIKILQDARALGDLSENTEYTEAKRDLGHLQSRLRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + AE+++ T ++ G TV L + + + Y+IVG EA+++ G +S SP+
Sbjct: 66 DKQLKYAEIVE--TKDDGKVDLGKTVVLKFDDDDETEEYKIVGRMEANLEDGKISFDSPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++ KE G V AP GE I++V
Sbjct: 124 GQAIMKKEAGVTSIVEAPAGEYKVTIVEV 152
>gi|325109310|ref|YP_004270378.1| transcription elongation factor GreA [Planctomyces brasiliensis DSM
5305]
gi|324969578|gb|ADY60356.1| transcription elongation factor GreA [Planctomyces brasiliensis DSM
5305]
Length = 160
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++ P+T +G +K+ E++ + P I ++EAR GDL ENAEY +E Q + +
Sbjct: 1 MERQPITRQGHEKLLAEIKHIETVILPEINTRLAEARDEGDLKENAEYHGQREQQGMAQA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ L+ + ++D + M + FG+TV++ + D++ Y+ VG E D +
Sbjct: 61 KVNLLKTKLANCYIVDKADMPKGVVTFGSTVTVKDLKWDDEEAYEFVGPGEEDYDCEPMK 120
Query: 122 I--SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
I SSP+A+A+ GK++GD ++V+ P G + EI+++
Sbjct: 121 ILTSSPLAKAMEGKKVGDKVAVDTPQGVRELEIVKI 156
>gi|256827725|ref|YP_003151684.1| transcription elongation factor GreA [Cryptobacterium curtum DSM
15641]
gi|256583868|gb|ACU95002.1| transcription elongation factor GreA [Cryptobacterium curtum DSM
15641]
Length = 156
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 3/140 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K+++EL + + E+R + I AR +GD+SEN+EY AK Q L E R+AE+
Sbjct: 8 LTEEGKQKLEEELHYLETEKRAEVGARIKVAREFGDISENSEYDDAKNEQGLLEARIAEI 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I++ A V+ S ++ G+TV++ G ++ + IVG E++V+ G +S SP+
Sbjct: 68 NRILSEATVVAAPKRS-SKVGIGSTVTVA--IGGSQRVFNIVGAAESNVREGRISNESPV 124
Query: 127 ARALIGKELGDIISVNAPGG 146
ALIG + GD + P G
Sbjct: 125 GSALIGHKKGDTVVAEGPTG 144
>gi|114561422|ref|YP_748935.1| transcription elongation factor GreB [Shewanella frigidimarina
NCIMB 400]
gi|114332715|gb|ABI70097.1| transcription elongation factor GreB [Shewanella frigidimarina
NCIMB 400]
Length = 161
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++ E + +E+RP + K ++ A GD SENA+Y K L + R+ L
Sbjct: 6 ITLEGYNKLRIEHDYLWKEQRPEVTKIVTWAAGLGDRSENADYTFNKRLLRQIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLVSISSP 125
++ +++ + ++ FGATV +E ++GD K ++IVG +E D + +SI SP
Sbjct: 66 RKLLPELKIVYYAPEQEGKVFFGATVE-IENDAGDIKTFKIVGPEEIYDERKDYISIDSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ARAL+ K++ D V+ P G+KT+ I ++
Sbjct: 125 MARALLKKQVDDEAVVSTPQGDKTWYINKI 154
>gi|166032355|ref|ZP_02235184.1| hypothetical protein DORFOR_02058 [Dorea formicigenerans ATCC
27755]
gi|166028078|gb|EDR46835.1| hypothetical protein DORFOR_02058 [Dorea formicigenerans ATCC
27755]
Length = 166
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 88/147 (59%), Gaps = 3/147 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KI++E+ +R+ R + ++A+ EARA GDLSEN EY+AAK+ +N NE R+ L
Sbjct: 5 LTESDVKKIKEEIEYRKIVVRKKELEAVKEARAQGDLSENFEYKAAKQDKNRNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A ++ + D I TV L ++ + + Y+IV + +GL+SI SP+
Sbjct: 65 ERMLKTANIVSDDSKE-DEIGINNTVDLYFEDDEEVETYRIVTSVRGNSLAGLISIESPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153
+A++G ++GD + + P G+ Y ++
Sbjct: 124 GKAVLGHKVGDRVKI--PAGDDGYYVV 148
>gi|56551614|ref|YP_162453.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241761261|ref|ZP_04759349.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|260752794|ref|YP_003225687.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|56543188|gb|AAV89342.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241374168|gb|EER63665.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|258552157|gb|ACV75103.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 165
Score = 88.2 bits (217), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/158 (32%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 1 MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M K P +T +G +K+++ ERP+I++ +S A GD SEN +Y ++
Sbjct: 1 MTTKNPNYITPQGLEKLKERYHHLMNTERPKIVEIVSWAAGNGDRSENGDYIYGRKKMRE 60
Query: 59 NEGRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
+ ++ L + A V+D S + ++ FGATV++ +++ +++ +VG+ EAD
Sbjct: 61 IDRELSWLSRRLKAARVVDPSAVEDRSKVWFGATVTIADEDD-NQRQVALVGEDEADASQ 119
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
G +S SP+ARAL G LGD+ V P GEK +E++++
Sbjct: 120 GRISWKSPLARALRGAALGDLRIVRLPAGEKEWEVIEI 157
>gi|260549248|ref|ZP_05823468.1| transcription elongation factor and transcript cleavage
[Acinetobacter sp. RUH2624]
gi|260407654|gb|EEX01127.1| transcription elongation factor and transcript cleavage
[Acinetobacter sp. RUH2624]
Length = 164
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 84/147 (57%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125
+ +++D + ++ FGA V +E G++K +IVG D+ D +SI SP
Sbjct: 66 GKRLEELKIVDYAPEQEGKVYFGAWVE-IENEEGEQKTLRIVGIDEIYDHHPQHISIESP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+ K++ D + V+ P G+K + I
Sbjct: 125 MARALLSKQVDDEVEVHTPLGKKLWYI 151
>gi|294056141|ref|YP_003549799.1| GreA/GreB family elongation factor [Coraliomargarita akajimensis
DSM 45221]
gi|293615474|gb|ADE55629.1| GreA/GreB family elongation factor [Coraliomargarita akajimensis
DSM 45221]
Length = 619
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 86/149 (57%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
V+ FD + E ++ P +AI AR +GDL EN+EY+ A++ Q++ R EL
Sbjct: 464 VSQASFDAAKAEYEDLIAKKIPENKEAIVIAREHGDLKENSEYKMARQDQDILLARKNEL 523
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++RA V D S + D + G+ V L E ++G + Y I+G ++D ++ ++S +P+
Sbjct: 524 EVDLSRARVTDFSEATKDNVGIGSVVELKEGSTGKVRRYSILGAWDSDPENDILSYKTPL 583
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK GD ++ G E+T+ IL +
Sbjct: 584 AQQLLGKSGGDSVTTKIGGSEETWTILSI 612
>gi|302874691|ref|YP_003843324.1| transcription elongation factor GreA [Clostridium cellulovorans
743B]
gi|307690697|ref|ZP_07633143.1| transcription elongation factor GreA [Clostridium cellulovorans
743B]
gi|302577548|gb|ADL51560.1| transcription elongation factor GreA [Clostridium cellulovorans
743B]
Length = 154
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 91/161 (56%), Gaps = 17/161 (10%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
KI +T G K++ EL + + +R I +A+ ARA GDLSENA+Y AAK+ Q++ E R+
Sbjct: 3 KIQLTEAGKQKLEDELNYLKSVKRVEIKEALKVARAQGDLSENADYSAAKDDQSITETRI 62
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--------IVGDQEADV 115
AE+E+I+ AE+I+ ST A V V K S K Y +V EAD
Sbjct: 63 AEIESILKYAEIIEAST--------DANVFDVNK-SAKVKFYDFDEIEVVTLVSSVEADA 113
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
++ +SI SP+ AL E+G +SV +P G E++++L
Sbjct: 114 KNMKISIDSPLGMALHRLEVGKKVSVTSPDGSYDVEVIEIL 154
>gi|307544299|ref|YP_003896778.1| transcription elongation factor GreB [Halomonas elongata DSM 2581]
gi|307216323|emb|CBV41593.1| transcription elongation factor GreB [Halomonas elongata DSM 2581]
Length = 193
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G ++++ L + +RP + + EA A GD SENA+Y K+ N R+ L
Sbjct: 39 ITAEGAERLRGILDHLSRVKRPALSTKVGEAAALGDRSENADYTYNKKELNRVIARIRYL 98
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D DR+ FGA V+L ++N G++ +IVG E D +S+ +P+
Sbjct: 99 TKRLDELQIVDRLPADTDRVFFGAFVTLEDEN-GEELRLRIVGHDETDTGKHWISVDAPL 157
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+AL+GK L D +V APGGE TY I ++
Sbjct: 158 AKALLGKGLDDEATVAAPGGETTYLITEI 186
>gi|123430789|ref|XP_001307960.1| transcription elongation factor [Trichomonas vaginalis G3]
gi|121889615|gb|EAX95030.1| transcription elongation factor, putative [Trichomonas vaginalis
G3]
Length = 150
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 79/137 (57%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E R+A
Sbjct: 12 IFFTPEGLEKIENEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQVEERIA 71
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LE ++ A++ID ++ D + G++V + E ++ ++ Y IVG EAD G +S S
Sbjct: 72 KLEMMVRNAKIIDEKDLNTDVVNIGSSVKVRELDTMEEDEYTIVGSAEADPLEGKISNES 131
Query: 125 PIARALIGKELGDIISV 141
P+ LIG GD++ V
Sbjct: 132 PVGSKLIGNRAGDVVEV 148
>gi|13508140|ref|NP_110089.1| transcription elongation factor GreA [Mycoplasma pneumoniae M129]
gi|2494921|sp|P78019|GREA_MYCPN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|1674124|gb|AAB96085.1| transcription elongation factor [Mycoplasma pneumoniae M129]
Length = 160
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 88/147 (59%), Gaps = 4/147 (2%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K +T +G +++ EL Q +RP IIK + EAR GDLSENA+Y AAK Q E
Sbjct: 3 LNKNYLTEEGLKQLEAELEHLIQVKRPAIIKLLQEARDQGDLSENADYDAAKAQQGEIET 62
Query: 62 RMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+++I+ ++I+ S T +++ G+TV + + +S + Y IVG EA+ + +
Sbjct: 63 RIAEIQDILANVKLINESQTKKANKVTLGSTVEIYDYSSKTHEKYTIVGALEANPEEHRI 122
Query: 121 SISSPIARALIGK---ELGDIISVNAP 144
S SP+A A+ G+ + D++ + P
Sbjct: 123 SNESPLAHAIYGRLVDDECDVVGIEVP 149
>gi|298242601|ref|ZP_06966408.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM
44963]
gi|297555655|gb|EFH89519.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM
44963]
Length = 154
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T+ G + +L + E R ++ + + +A+ GD+ +NA Y AK+ Q L E R+
Sbjct: 6 VFLTNDGLQRALSQLDNLRTEGRAKVAQYLHDAKESGDVIDNAAYDDAKKEQALLESRIL 65
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELE+++TRA++I+ D ++ G+ V L + G Y IVG EA +G +S S
Sbjct: 66 ELEHLVTRAKLIN--NARTDEVSLGSIVHL-RSSEGRDYCYTIVGAFEASPSAGRISNES 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ RAL+G + GD + V+ PGG K Y I ++
Sbjct: 123 PVGRALLGHKAGDHVIVSTPGGVKEYTISRI 153
>gi|301633495|gb|ADK87049.1| transcription elongation factor GreA [Mycoplasma pneumoniae FH]
Length = 160
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 88/147 (59%), Gaps = 4/147 (2%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K +T +G +++ EL Q +RP IIK + EAR GDLSENA+Y AAK Q E
Sbjct: 3 LNKNYLTEEGLKQLEAELEHLIQVKRPAIIKLLQEARDQGDLSENADYDAAKAQQGEIET 62
Query: 62 RMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+++I+ ++I+ S T +++ G+TV + + +S + Y IVG EA+ + +
Sbjct: 63 RIAEIQDILANVKLINESQTKKANKVTLGSTVEIYDYSSKTHEKYTIVGALEANPEEHRI 122
Query: 121 SISSPIARALIGK---ELGDIISVNAP 144
S SP+A A+ G+ + D++ + P
Sbjct: 123 SNESPLAHAIYGRLVDDECDVVGIEVP 149
>gi|189485414|ref|YP_001956355.1| transcription elongation factor GreA [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287373|dbj|BAG13894.1| transcription elongation factor GreA [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 158
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 94/155 (60%), Gaps = 4/155 (2%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKE-LQNLNE 60
+ +I +T +G K+ +EL Q+ +P I I+ AR +GDL ENAEY AAKE L NL
Sbjct: 1 MSEIYLTREGRKKLIKELNELQKR-KPLIQDEIASAREHGDLRENAEYCAAKETLANLIR 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ EL + I A++I+ + D++ G TV++ ++ D + Y IV +EAD + +
Sbjct: 60 -RIMELTSKIACAKIIEEQNIDSDKVFIGVTVTIKDEYGADYQ-YAIVDLEEADPVANRI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SI SP+A+ L+G G+ ++V P G+ ++IL++
Sbjct: 118 SIQSPLAQGLLGHTAGETVAVELPAGKTKFKILKI 152
>gi|209965876|ref|YP_002298791.1| transcription elongation factor GreB [Rhodospirillum centenum SW]
gi|209959342|gb|ACI99978.1| transcription elongation factor GreB [Rhodospirillum centenum SW]
Length = 180
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF ++Q+ELR + ERP++++ ++ A GD SEN +Y K+ + R+ L
Sbjct: 25 MTPEGFRRMQEELRSLLRVERPKVVEVVAWAAGNGDRSENGDYIYGKKRLREIDRRIRFL 84
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S D++ FGATV+ + G ++ IVG EAD+ G VS SP
Sbjct: 85 SKRLENAEVVDASRQPRRDQVFFGATVTYA-REDGTERTVTIVGIDEADMDQGKVSWISP 143
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ GD++++ P G + E++ + +
Sbjct: 144 IARALLKAREGDLVTLRTPQGPEEIEVVAIAY 175
>gi|227508629|ref|ZP_03938678.1| transcription elongation factor GreA [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227191961|gb|EEI72028.1| transcription elongation factor GreA [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 155
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 88/147 (59%), Gaps = 7/147 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T G+ KI+ E+ + + +RP IK++++ARA GDLSENAEY AAK +L++L E R+
Sbjct: 8 ITKAGYQKIKDEIN-QLENDRPIKIKSLADARALGDLSENAEYSAAKRDLRHL-ESRLRF 65
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + +++ S D + G V+ + + YQIVG E D+ +G +SI+SP
Sbjct: 66 LRKELQYSKIYTPS--DNDNVEVGKYVTFEFLDDKSTETYQIVGTPEVDIDNGKISIASP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
I AL+ G+I+++ AP TY++
Sbjct: 124 ICAALLNHHTGEIVTIQAPN--LTYQV 148
>gi|189424976|ref|YP_001952153.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ]
gi|189421235|gb|ACD95633.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ]
Length = 157
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+TS+G ++Q E + + ERP++++ +S+A A GD SENAEY K+ + ++ +L
Sbjct: 5 ITSQGLKRLQDEFEYLWRVERPKVVQGVSDAAAEGDRSENAEYIYGKKRLREIDRKLKQL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ E+ + R++FG VS E G+ YQ+ G E DV+ G++SI SP+
Sbjct: 65 GGRLKVLEIAPAPPQNPVRVSFGCWVSY-EDLEGNSYCYQLGGPDEFDVKQGVISIDSPV 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+ +++ D +++ PGG+ I ++
Sbjct: 124 GQALLHRQVDDEVTIRRPGGDLVVYITEI 152
>gi|154484187|ref|ZP_02026635.1| hypothetical protein EUBVEN_01898 [Eubacterium ventriosum ATCC
27560]
gi|149734664|gb|EDM50581.1| hypothetical protein EUBVEN_01898 [Eubacterium ventriosum ATCC
27560]
Length = 165
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 81/137 (59%), Gaps = 1/137 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T +KI++E+ R+ RP I+A+ EARA GDLSEN EY AAK+ +N NEGR+
Sbjct: 1 MKLTQSDVEKIKEEIEHRKLVVRPEAIEAVKEARAQGDLSENFEYYAAKKDKNKNEGRIR 60
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ A +I + + D + TV + ++ + + ++IV D SG +S S
Sbjct: 61 YLERVLKTATIISDES-ADDEVGLNNTVQVYFEDDDETETFKIVSTMRGDSISGRISGDS 119
Query: 125 PIARALIGKELGDIISV 141
P+ AL+G ++GD + V
Sbjct: 120 PMGAALMGHKVGDRVEV 136
>gi|326387218|ref|ZP_08208828.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
DSM 19370]
gi|326208399|gb|EGD59206.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
DSM 19370]
Length = 161
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 2/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D P+T G ++ ERP+I++ +S A GD SEN +Y ++ +
Sbjct: 4 DGNPITPAGMAALRARYDHLLGTERPQIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRE 63
Query: 63 MAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ L + A VID + +R+ FGATV + +++ +++ +VGD E D GL+
Sbjct: 64 LSHLARRMKAARVIDPVQQQERERVLFGATVEIADEDD-NRRTLTLVGDDEQDAGKGLIG 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+PIARAL G +GD+ V PGGEK +EI+ +
Sbjct: 123 WGAPIARALRGARVGDLRRVRLPGGEKEWEIMTI 156
>gi|326789147|ref|YP_004306968.1| transcription elongation factor GreA [Clostridium lentocellum DSM
5427]
gi|326539911|gb|ADZ81770.1| transcription elongation factor GreA [Clostridium lentocellum DSM
5427]
Length = 155
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D +++E+ +R+ R + + + EARA+GDLSEN EY+AAK + NEGR+ L
Sbjct: 5 LTQQDIDNMKKEIEYRKVVVRKQRNEEVKEARAHGDLSENYEYKAAKRERGRNEGRIKYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A +I +T +G+ + G V + Y+IV E D + +SI SP+
Sbjct: 65 ERMIKTATIITDNTEAGE-VGLGKLVDVYFIEDDMNIEYEIVTTMETDAINNKISIESPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
+ + K +GDI+++++P GE + I
Sbjct: 124 GKMIYKKRVGDIVNIDSPDGEYSVRI 149
>gi|320528944|ref|ZP_08030036.1| transcription elongation factor GreA [Selenomonas artemidis F0399]
gi|320138574|gb|EFW30464.1| transcription elongation factor GreA [Selenomonas artemidis F0399]
Length = 150
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K+ ++L + + R + + + A A GDLSEN+EY AK Q EG + EL
Sbjct: 2 LTEDGYNKLVEKLNYLKSVRRIEVAERLKAAIALGDLSENSEYDDAKNEQAFLEGEIQEL 61
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN I +++I G + G+ V++ + + + + IVG EAD G +S SP+
Sbjct: 62 ENKIRNSDII--KAGDGKSVTIGSRVTVKDLEFDEDETFLIVGSTEADPDEGKISNESPL 119
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL+G+++G +I+V+AP G Y+I+ +
Sbjct: 120 GMALLGQKIGKVINVSAPAGMIRYKIVDI 148
>gi|238917160|ref|YP_002930677.1| transcription elongation factor GreA [Eubacterium eligens ATCC
27750]
gi|238872520|gb|ACR72230.1| transcription elongation factor GreA [Eubacterium eligens ATCC
27750]
Length = 166
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K+++E+ +R E R + + E RA GDLSEN EY AAK +N NE R+ L
Sbjct: 5 LTKNDIKKMEEEIEYRIHEVRKAALDDVKETRAQGDLSENFEYHAAKRFKNKNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A VID S+ + D + TV ++ ++ + +IV AD SG++SI SP+
Sbjct: 65 QRTIKNATVIDDSS-ADDEVGVNNTVEVLYEDDESTETIKIVTTIRADSLSGMISIESPL 123
Query: 127 ARALIGKELGD--IISVN 142
+AL+G + GD ++ VN
Sbjct: 124 GKALLGHKKGDRVLVQVN 141
>gi|42518266|ref|NP_964196.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC
533]
gi|41582550|gb|AAS08162.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC
533]
Length = 153
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 95/156 (60%), Gaps = 5/156 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
MV +T +G+ +I+ E+ R +++RPR IK + EAR+ GDLSEN+EY AK EL +L
Sbjct: 1 MVYYQKMTPEGYQEIKDEI-ARLKKDRPRRIKILQEARSMGDLSENSEYTTAKMELGHL- 58
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ R+ L+ + +E+I SG I G+ V+L+ + + + Y+IVG EAD+ G
Sbjct: 59 QSRLRYLDKQLRYSEIIQ-KDESG-TIDLGSNVTLLFEGDDEAEEYRIVGRMEADLAKGK 116
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +AL+ ++ G ++V AP G +I+ V
Sbjct: 117 ISFDSPLGQALMKQKAGATVTVEAPAGSYDVKIIDV 152
>gi|302672254|ref|YP_003832214.1| transcription elongation factor GreA/GreB2 [Butyrivibrio
proteoclasticus B316]
gi|302396727|gb|ADL35632.1| transcription elongation factor GreA/GreB2 [Butyrivibrio
proteoclasticus B316]
Length = 167
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K + ++ E+ R+ R +++ + EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTRKDIEDMEAEIEHRKVVVRKELLEHVKEARAQGDLSENFEYYAAKKAKNQNESRIRFL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A+VID +T + D++ +V++ + G ++ Y+IV + GL+S+ SP+
Sbjct: 65 ERMIKTAKVIDDNT-TEDQVGMNKSVTVRIEEDGSEETYKIVTTMRQNSLKGLISVESPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
+ L+G +GD +++ +YEI
Sbjct: 124 GKQLLGHRVGDRVNIKVSDN-YSYEI 148
>gi|326203392|ref|ZP_08193257.1| transcription elongation factor GreA [Clostridium papyrosolvens DSM
2782]
gi|325986650|gb|EGD47481.1| transcription elongation factor GreA [Clostridium papyrosolvens DSM
2782]
Length = 158
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 88/152 (57%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
++ +T +G K+++EL + + +R + + I +A ++GD+SEN+EY AK Q EGR+
Sbjct: 5 EVVLTYEGLKKLEEELEFLRGTKRKEVAERIKQALSFGDISENSEYDEAKNEQAQVEGRI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LE+++ A +ID ++ D ++ G+ V + + ++ Y IVG EA+ +S
Sbjct: 65 VQLESMLKHARIIDEDEVNTDVVSLGSKVKIYDIEFDEEVEYLIVGSTEANPLKSKISNE 124
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ ALIG + + V P G ++IL++
Sbjct: 125 SPVGAALIGHSKDETVEVQVPDGVLKFKILEI 156
>gi|12045138|ref|NP_072949.1| transcription elongation factor GreA [Mycoplasma genitalium G37]
gi|255660457|ref|ZP_05405866.1| transcription elongation factor GreA [Mycoplasma genitalium G37]
gi|1346176|sp|P47524|GREA_MYCGE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|1045978|gb|AAC71504.1| transcription elongation factor GreA [Mycoplasma genitalium G37]
gi|166078978|gb|ABY79596.1| transcription elongation factor GreA [synthetic Mycoplasma
genitalium JCVI-1.0]
Length = 161
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 90/148 (60%), Gaps = 5/148 (3%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K +T +GF ++++EL Q +RP II+ + EAR GDLSENA+Y AAK Q E
Sbjct: 3 LNKNYLTQEGFKQLEKELENLIQVKRPEIIRLLQEARDQGDLSENADYDAAKAQQGEIET 62
Query: 62 RMAELENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+AE+++I+ A++I + +++ G+TV + + +S + Y IVG EA+ +
Sbjct: 63 RIAEIQDILANAKLISDHQAKTKVTKVSLGSTVEIYDYSSKSNEKYTIVGTLEANPEEHK 122
Query: 120 VSISSPIARALIGKELG---DIISVNAP 144
+S SP+A A+ G+ +G D++ + P
Sbjct: 123 ISNESPLALAIYGRLIGDECDVVGIEVP 150
>gi|289626983|ref|ZP_06459937.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289646809|ref|ZP_06478152.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330867499|gb|EGH02208.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 157
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 86/151 (56%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ S R+ FGA V +E +GD K ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDMRVVHYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ KE GD + VN P EK + + +++
Sbjct: 125 ARALLKKEEGDEVLVNTPEVEKLWFVNSIVY 155
>gi|163792651|ref|ZP_02186628.1| Transcription elongation factor [alpha proteobacterium BAL199]
gi|159182356|gb|EDP66865.1| Transcription elongation factor [alpha proteobacterium BAL199]
Length = 185
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 92/152 (60%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF ++ ELR ++ ERP++++ +S A GD SEN +Y K+ + R+ L
Sbjct: 32 ITPRGFQAMRDELRQLRRVERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D + + D++ FGATV+ ++ +++ +IVG EAD++ G VS +P
Sbjct: 92 LKRLEIAEVVDPAQQKNHDQVFFGATVTYADEQD-NERTVRIVGVDEADLERGEVSWIAP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ + GD++ + P G + E++++ +
Sbjct: 151 IARALLKAQEGDVVELRTPAGPQNIEVVRIAY 182
>gi|85374381|ref|YP_458443.1| transcription elongation factor [Erythrobacter litoralis HTCC2594]
gi|84787464|gb|ABC63646.1| transcription elongation factor [Erythrobacter litoralis HTCC2594]
Length = 159
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G+ ++ ERP I++ +S A GD SEN +Y ++ + +A
Sbjct: 7 PITPGGYAALKARYDRLLGTERPEIVEIVSWAAGNGDRSENGDYIYGRKRMREIDRELAH 66
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + A VI+ S DR FGAT++L +++ +K +VGD E D +G + SS
Sbjct: 67 LARRMKHARVIEPSEQPDKDRAFFGATLTLADEDDA-RKTVTLVGDDEQDASAGKIGWSS 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL G +GD+ +V+ P GE+ +E++ + +
Sbjct: 126 PLARALRGARVGDLRTVHLPSGEREWEVMAIAY 158
>gi|229524693|ref|ZP_04414098.1| transcription elongation factor GreB [Vibrio cholerae bv. albensis
VL426]
gi|229338274|gb|EEO03291.1| transcription elongation factor GreB [Vibrio cholerae bv. albensis
VL426]
Length = 161
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
++ +++D S ++ FGA V +E +GD K ++IVG +E D + +SI S
Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGDVKKFRIVGPEEIYGDAKD-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ K++ + V P G K + I
Sbjct: 124 PMARALLKKQVDEEFQVQTPTGIKEWFI 151
>gi|225570871|ref|ZP_03779894.1| hypothetical protein CLOHYLEM_06975 [Clostridium hylemonae DSM
15053]
gi|225160333|gb|EEG72952.1| hypothetical protein CLOHYLEM_06975 [Clostridium hylemonae DSM
15053]
Length = 185
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 86/150 (57%), Gaps = 1/150 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KI++E+ +R+ R + ++A+ EARA GDLSEN EY+AAK+ +N NE R+ L
Sbjct: 23 LTKSDVQKIKEEIEYRKLVVRKKELEAVKEARAQGDLSENFEYKAAKQDKNRNESRIRYL 82
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A ++ T D + TV L + + + Y++V + G +SI SP+
Sbjct: 83 EKMLKTARIVS-DTSREDEVGINNTVELYFEEDDETEKYRLVTSVRGNSLEGRISIESPL 141
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+A++G + G+ + V A GG Y +++ +
Sbjct: 142 GKAILGHKEGERVKVTANGGSGYYVVIRAI 171
>gi|307295011|ref|ZP_07574853.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum
L-1]
gi|306879485|gb|EFN10703.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum
L-1]
Length = 160
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF K++ E ERP+I++ +S A GD SEN +Y ++ +G++ L
Sbjct: 8 ITPEGFAKLRAEYDQLLGHERPKIVEVVSWAAGNGDRSENGDYLYGRKRMREIDGQLKRL 67
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+D ++ FGATV++ +++ ++ +VG+ E + +G + S+P
Sbjct: 68 SRKMKDAKVVDPRQQPDKSKVYFGATVTIADEDD-KRRTVTLVGNDETEASAGRIGWSTP 126
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL G +GD+ V P GEK YE++++ +
Sbjct: 127 IARALRGAAVGDLRRVILPAGEKEYEVMEIRY 158
>gi|330815852|ref|YP_004359557.1| Transcription elongation factor [Burkholderia gladioli BSR3]
gi|327368245|gb|AEA59601.1| Transcription elongation factor [Burkholderia gladioli BSR3]
Length = 186
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL EERP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLHLIDEERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S S D++ FGATV ++ G+ IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQESADQVFFGATVDYATED-GEDHTITIVGVDEVDLDHGHVSWVSP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ +GD +++ P G + ++L V +
Sbjct: 150 IARALLKARIGDTVTLMTPAGPQPIDVLDVRY 181
>gi|153855392|ref|ZP_01996541.1| hypothetical protein DORLON_02555 [Dorea longicatena DSM 13814]
gi|149752212|gb|EDM62143.1| hypothetical protein DORLON_02555 [Dorea longicatena DSM 13814]
Length = 167
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KI++E+ +R+ R + ++A+ EARA GDLSEN EY+AAK+ +N NE R+ L
Sbjct: 5 LTESDVKKIKEEIEYRKIVVRKKELEAVKEARAQGDLSENFEYKAAKQDKNRNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A+++ T D + TV + ++ + + Y++V + GL+SI SP+
Sbjct: 65 ERMLKNAKIVS-DTSKADEVGINNTVEVYFEDDDETETYRLVTSIRGNSLQGLISIESPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+A+ G ++GD + V G + Y +++
Sbjct: 124 GKAIQGHKVGDRVLVKTNGNDGYYIVIK 151
>gi|291520255|emb|CBK75476.1| Transcription elongation factor [Butyrivibrio fibrisolvens 16/4]
Length = 167
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 86/148 (58%), Gaps = 6/148 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T DKIQ E+ R+ RP++++ + E RA GDLSEN EY AK +N+N+ R+ L
Sbjct: 5 LTQGDIDKIQAEIDERKLVLRPKLLEEVKETRAQGDLSENFEYHEAKRAKNMNDSRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ AEV+D S+ + D + TV++ ++ Y++V + GL+SI SP+
Sbjct: 65 EKMLKFAEVVDDSS-AEDEVGINNTVTIYIPEDDCEETYKLVTSIRGNSLKGLISIESPL 123
Query: 127 ARALIGKELGD--IISVNAPGGEKTYEI 152
A+ GK +GD ++ VN + +YE+
Sbjct: 124 GAAIRGKHVGDKALVKVN---DDYSYEV 148
>gi|187929352|ref|YP_001899839.1| transcription elongation factor GreB [Ralstonia pickettii 12J]
gi|309781794|ref|ZP_07676527.1| transcription elongation factor GreB [Ralstonia sp. 5_7_47FAA]
gi|187726242|gb|ACD27407.1| transcription elongation factor GreB [Ralstonia pickettii 12J]
gi|308919435|gb|EFP65099.1| transcription elongation factor GreB [Ralstonia sp. 5_7_47FAA]
Length = 187
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+++++ EL ERP ++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 32 ITPAGYERLRTELMHLIDTERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I +AEV+D S D+I FGATV+ + G++K IVG E D+ G VS SP
Sbjct: 92 TRRIEKAEVVDASLQGDNDQIFFGATVTYANQR-GEEKTITIVGMDEVDLDIGHVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARALI +GD + + P G + +IL+V +
Sbjct: 151 IARALIKARVGDTVPLRTPTGVEQIDILEVKY 182
>gi|309775361|ref|ZP_07670366.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium
3_1_53]
gi|308916878|gb|EFP62613.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium
3_1_53]
Length = 159
Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 93/152 (61%), Gaps = 4/152 (2%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K VT +G D++ +E R +I+ + EARA GDLSENA+Y AA++ Q E R
Sbjct: 4 EKFLVTKEGLDELLKEQDNLIHVVRDEVIRELQEARAQGDLSENADYDAARDRQARVEAR 63
Query: 63 MAELENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ +LE +I AE+I D + + I+ G+TV++ + ++ +++ Y IVG EAD +G +
Sbjct: 64 IRDLEAMIANAEIISGDKKSTNKKTISLGSTVTIQDLSTNEEETYTIVGSIEADPLNGKL 123
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152
S +P+A +L+ ++GD++ + E+ Y++
Sbjct: 124 SNITPLATSLMDHKVGDVVEIEL--AEEPYQV 153
>gi|258620411|ref|ZP_05715449.1| Transcription elongation factor greB [Vibrio mimicus VM573]
gi|258626042|ref|ZP_05720898.1| Transcription elongation factor greB [Vibrio mimicus VM603]
gi|262170353|ref|ZP_06038031.1| transcription elongation factor GreB [Vibrio mimicus MB-451]
gi|262402001|ref|ZP_06078566.1| transcription elongation factor GreB [Vibrio sp. RC586]
gi|258581693|gb|EEW06586.1| Transcription elongation factor greB [Vibrio mimicus VM603]
gi|258587290|gb|EEW12001.1| Transcription elongation factor greB [Vibrio mimicus VM573]
gi|261891429|gb|EEY37415.1| transcription elongation factor GreB [Vibrio mimicus MB-451]
gi|262351973|gb|EEZ01104.1| transcription elongation factor GreB [Vibrio sp. RC586]
Length = 160
Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
++ +++D S ++ FGA V +E +G+ K ++IVG +E D + +SI S
Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGEVKKFRIVGPEEIYGDAKD-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ K++ + V+ P G K + I
Sbjct: 124 PMARALLKKQVDEEFQVHTPTGMKEWFI 151
>gi|227873285|ref|ZP_03991550.1| transcription elongation factor GreA [Oribacterium sinus F0268]
gi|227840852|gb|EEJ51217.1| transcription elongation factor GreA [Oribacterium sinus F0268]
Length = 161
Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 82/149 (55%), Gaps = 2/149 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +K++ EL + +R I + I EAR GDLSENAEY AAK+ Q E R+ +
Sbjct: 9 LTRAGLNKLESELHNLKVNKRQEIAEKIKEAREQGDLSENAEYDAAKDEQREIEERIVAI 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+++ AEV+D + I G V L +K ++ Y IVG EA+ G +S SP+
Sbjct: 69 ESLLKNAEVVDDAEEGT--INIGCKVKLFDKEFDEEVEYMIVGSTEANSLQGKISNESPV 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL+ +GD ++V G Y++L V
Sbjct: 127 GMALLRHRVGDEVTVETQAGVLEYKVLSV 155
>gi|329666577|gb|AEB92525.1| transcription elongation factor GreA [Lactobacillus johnsonii DPC
6026]
Length = 153
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/156 (37%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
MV +T +G+ +I+ E+ R +++RPR IK + EAR+ GDLSEN+EY AK EL +L
Sbjct: 1 MVYYQKMTPEGYQEIKDEI-ARLKKDRPRRIKILQEARSMGDLSENSEYTTAKMELGHL- 58
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ R+ L+ + +E+I SG I G+ V+L+ + + Y+IVG EAD+ G
Sbjct: 59 QSRLRYLDKQLRYSEIIQ-KDESGT-IDLGSNVTLLFDGDDEAEKYRIVGRMEADLAKGK 116
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +AL+ ++ G ++V AP G +I+ V
Sbjct: 117 ISFDSPLGQALMKQKAGATVTVEAPAGSYDVKIIAV 152
>gi|242237779|ref|YP_002985960.1| transcription elongation factor GreB [Dickeya dadantii Ech703]
gi|242129836|gb|ACS84138.1| transcription elongation factor GreB [Dickeya dadantii Ech703]
Length = 160
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D S ++ FGA V VE +GD K ++IVG E + +SI +P+
Sbjct: 66 RKRLQIVRVVDYSPQQEGKVFFGAWVE-VENEAGDIKRFRIVGPDEIYGRKDYISIDAPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+ K + + + VN P G + + + ++
Sbjct: 125 ARALLKKTVDEDVVVNTPAGPRVWYVNKI 153
>gi|149911350|ref|ZP_01899970.1| transcription elongation factor GreB [Moritella sp. PE36]
gi|149805590|gb|EDM65593.1| transcription elongation factor GreB [Moritella sp. PE36]
Length = 161
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++ + + L++ ++ERPR+ K +S A + GD S+NA+Y+ K L + + L
Sbjct: 7 ITRVGWETLDKRLKFLWKQERPRVTKVVSWAASLGDRSDNADYKENKHLLRTIDREIRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ E++D S + FGA L E ++G +IVG E D + V++ SP+
Sbjct: 67 VKRLEVLEIVDYSPQQDGTVYFGAYAEL-EDDNGTVIQCRIVGRDELDSKRNFVTVDSPM 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
A+ALIGK++ D V+ P G KT+ I
Sbjct: 126 AKALIGKQVDDEAIVHTPAGSKTWYI 151
>gi|332533239|ref|ZP_08409106.1| transcription elongation factor GreB [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037318|gb|EGI73773.1| transcription elongation factor GreB [Pseudoalteromonas
haloplanktis ANT/505]
Length = 159
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G+ ++QQE +RP + K +S A + GD SENA+YQ K L + R+ L
Sbjct: 6 VTREGYLQLQQEHDQLWNVKRPEVTKIVSWAASLGDRSENADYQYNKRLLRQIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I ++ID S + ++ FGA V +E G+ K ++IVG E + +SI SP+
Sbjct: 66 RKRIPDLKIIDYSPVQDGKVFFGAWVE-IENEEGEVKKFRIVGPDEIYDRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARALI K++ D V P G+K + +
Sbjct: 125 ARALIKKQVDDEFEVTTPQGKKQWYV 150
>gi|315650384|ref|ZP_07903455.1| transcription elongation factor GreA [Eubacterium saburreum DSM
3986]
gi|315487311|gb|EFU77622.1| transcription elongation factor GreA [Eubacterium saburreum DSM
3986]
Length = 168
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/135 (37%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + KI+ E+ R+ RP++I+A+ EARA GDLSEN EY AAK +N NE R+ L
Sbjct: 9 LTKEDIKKIEAEIEERKLVLRPQLIEAVKEARAQGDLSENFEYYAAKREKNKNESRINYL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ V + T + D + G V L ++ + + ++IV D G +SI SPI
Sbjct: 69 ERMLKFCHVYEDKT-NDDEVGIGKEVELYFEDDDESEKFKIVTSIRGDSLKGRLSIESPI 127
Query: 127 ARALIGKELGDIISV 141
+A+IG++ GD + V
Sbjct: 128 GKAIIGRKKGDRVKV 142
>gi|330827878|ref|YP_004390830.1| transcription elongation factor GreB [Aeromonas veronii B565]
gi|328803014|gb|AEB48213.1| transcription elongation factor GreB [Aeromonas veronii B565]
Length = 157
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 86/149 (57%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K+++EL + ++ERP + + ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYNKLKEELDFLWRQERPEVTRKVAWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++D + ++ FGA V VE G+ K ++IVG E + +SI SP+
Sbjct: 66 RKCLEELGIVDYAPAQEGKVFFGAWVE-VENEEGETKRFRIVGYDEIFERKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+ KE+GD V P G+ + I ++
Sbjct: 125 ARALLKKEVGDEAIVRTPVGDVCWYINEI 153
>gi|207723815|ref|YP_002254213.1| transcription elongation factor (transcript cleavage factor)
protein [Ralstonia solanacearum MolK2]
gi|206589020|emb|CAQ35982.1| transcription elongation factor (transcript cleavage factor)
protein [Ralstonia solanacearum MolK2]
Length = 187
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 32 ITPTGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I RAEV+D S D+I FGATV+ ++ GD+ IVG E D+ G VS SP
Sbjct: 92 TRRIERAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLDKGYVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARALI GD +++ P G +IL V +
Sbjct: 151 IARALIKAREGDTVALRTPTGVAQIDILAVTY 182
>gi|119897715|ref|YP_932928.1| transcription elongation factor GreB [Azoarcus sp. BH72]
gi|119670128|emb|CAL94041.1| putative transcription elongation factor [Azoarcus sp. BH72]
Length = 222
Score = 87.0 bits (214), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D ++ EL + ERP++++ ++ A GD SEN +Y K+ + R+ L
Sbjct: 70 MTRRGYDALRTELDQLVRVERPKLVETVAWAAGNGDRSENGDYIYGKKRLREIDRRIRFL 129
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I AEV+D D++ FGATV++ + + D++ +QIVG EA+ G +S SP
Sbjct: 130 IKRIESAEVVDPERQENVDQVFFGATVTITDADGEDEQTWQIVGVDEANASEGRISWISP 189
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARAL+ +LG+ + +P G + E++ + ++
Sbjct: 190 LARALLKVKLGETVRFMSPAGPREIEVVDIRYV 222
>gi|218708218|ref|YP_002415839.1| transcription elongation factor GreB [Vibrio splendidus LGP32]
gi|218321237|emb|CAV17187.1| Transcription elongation factor greB [Vibrio splendidus LGP32]
Length = 160
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 84/148 (56%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++ E E+RP I K ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYNKLKAEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ ++D S ++ FGA V +E + G+ K ++IVG +E D + G +SI S
Sbjct: 66 RKFLPDVTIVDYSPQQEGKVFFGAWVE-IENDDGEIKKFRIVGPEEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ KE+ D +V P G+K + I
Sbjct: 124 PMARALLKKEVDDEFTVTTPEGDKEWFI 151
>gi|332308523|ref|YP_004436374.1| transcription elongation factor GreB [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175852|gb|AEE25106.1| transcription elongation factor GreB [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 158
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 85/151 (56%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ K+ E ++RP I K ++ A + GD SENA+YQ K + R+ L
Sbjct: 6 ITPEGYKKLNDEHDELWLKQRPEITKIVTWAASLGDRSENADYQYNKRKLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
++ ++++ S ++ FGA V +E + G+ K ++IVG +E D + G +SI S
Sbjct: 66 RKLLPELQIVNYSPQQAGKVFFGAWVE-IENDEGETKQFRIVGPEEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARALI KE+ D+ SV P G K + I +
Sbjct: 124 PMARALIKKEVDDVASVKTPTGYKDWYITSI 154
>gi|299066253|emb|CBJ37437.1| Transcription elongation factor (Transcript cleavage factor)
[Ralstonia solanacearum CMR15]
Length = 187
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 32 ITPAGYTRLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I RAEV+D S D+I FGATV+ + GD+ IVG E D+ G VS SP
Sbjct: 92 TRRIERAEVVDASLQGDNDQIFFGATVTYANQ-GGDETTITIVGMDEVDLDKGQVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARALI GD +++ P G ++ +IL V +
Sbjct: 151 IARALIKAREGDTVALRTPTGVESIDILAVTY 182
>gi|227511608|ref|ZP_03941657.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC
11577]
gi|227085102|gb|EEI20414.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC
11577]
Length = 155
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 88/147 (59%), Gaps = 7/147 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T G+ KI+ E+ + + +RP IK++++ARA GDLSENAEY AAK +L++L E R+
Sbjct: 8 ITKAGYQKIKDEIN-QLENDRPIKIKSLADARALGDLSENAEYSAAKRDLRHL-ESRLRF 65
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + +++ S D + G V+ + + YQIVG E D+ +G +SI+SP
Sbjct: 66 LRKELQYSKIYTPS--DNDNVEVGKYVTFEFLDDKSTETYQIVGTPEVDIDNGKISIASP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
I AL+ G+I+++ AP TY++
Sbjct: 124 IGAALLNHHTGEIVTIQAPN--LTYQV 148
>gi|325265886|ref|ZP_08132572.1| transcription elongation factor GreB [Kingella denitrificans ATCC
33394]
gi|324982524|gb|EGC18150.1| transcription elongation factor GreB [Kingella denitrificans ATCC
33394]
Length = 163
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++Q EL +ERP I++ ++ A GD SEN +Y K + R+ L
Sbjct: 9 LTPAGHRRLQDELYQLVHKERPEIVQVVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D T + D++ F ATV+L E+ G ++ +IVG+ E D G +S SP
Sbjct: 69 TQRLANACVVDPETREATDQVFFAATVTL-ERGDGSEQVVRIVGEDEIDSAKGKISWKSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ARALI GDI+ +N P G +T EIL V
Sbjct: 128 LARALIKACDGDIVRLNTPEGTETIEILAV 157
>gi|94497870|ref|ZP_01304436.1| transcription elongation factor [Sphingomonas sp. SKA58]
gi|94422759|gb|EAT07794.1| transcription elongation factor [Sphingomonas sp. SKA58]
Length = 161
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF K++ + ERP I++ +S A GD SEN +Y ++ +G++ L
Sbjct: 9 ITPEGFAKLRADYDHLLGVERPSIVEVVSWAAGNGDRSENGDYLYGRKRMREIDGQLKRL 68
Query: 67 ENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+D R+ FGATV++ +++ + + +VG+ E DV +G + SP
Sbjct: 69 SKKMKDAKVVDPWQQPDKSRVYFGATVTIADEDD-NHRTVTLVGNDETDVDAGRIGWGSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL G +GD+ V P GE+ YE++ + +
Sbjct: 128 IARALRGAAVGDLRRVMLPAGEREYEVMAIRY 159
>gi|83748900|ref|ZP_00945911.1| GreB [Ralstonia solanacearum UW551]
gi|207743760|ref|YP_002260152.1| transcription elongation factor (transcript cleavage factor)
protein [Ralstonia solanacearum IPO1609]
gi|300703579|ref|YP_003745181.1| transcription elongation factor (transcript cleavage factor)
[Ralstonia solanacearum CFBP2957]
gi|83724466|gb|EAP71633.1| GreB [Ralstonia solanacearum UW551]
gi|206595159|emb|CAQ62086.1| transcription elongation factor (transcript cleavage factor)
protein [Ralstonia solanacearum IPO1609]
gi|299071242|emb|CBJ42560.1| Transcription elongation factor (Transcript cleavage factor)
[Ralstonia solanacearum CFBP2957]
Length = 187
Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 32 ITPTGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I RAEV+D S D+I FGATV+ ++ GD+ IVG E D+ G VS SP
Sbjct: 92 TRRIERAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLDKGYVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARALI GD +++ P G +IL V +
Sbjct: 151 IARALIKAREGDTVALRTPTGVAQIDILAVTY 182
>gi|149189239|ref|ZP_01867526.1| transcription elongation factor GreB [Vibrio shilonii AK1]
gi|148836993|gb|EDL53943.1| transcription elongation factor GreB [Vibrio shilonii AK1]
Length = 161
Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 84/148 (56%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QE + E RP + K ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYNKLKQEHDYLWNERRPEVTKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ ++D S ++ FGA V +E G+ +++IVG +E D + G +SI S
Sbjct: 66 RKFLPEVTIVDYSPQQEGKVFFGAWVE-IENEEGETMHFRIVGPEEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ K++ D + V P G+K + I
Sbjct: 124 PMARALLKKQVDDEVVVKTPQGDKEWFI 151
>gi|153212566|ref|ZP_01948313.1| transcription elongation factor GreB [Vibrio cholerae 1587]
gi|124116437|gb|EAY35257.1| transcription elongation factor GreB [Vibrio cholerae 1587]
Length = 160
Score = 87.0 bits (214), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
++ +++D S ++ FGA V +E +G+ K ++IVG +E D + +SI S
Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGEVKKFRIVGPEEIYGDAKD-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ K++ + V+ P G K + I
Sbjct: 124 PMARALLKKQVDEEFQVHTPMGMKEWFI 151
>gi|256851960|ref|ZP_05557347.1| transcription elongation factor GreB [Lactobacillus jensenii
27-2-CHN]
gi|260661470|ref|ZP_05862383.1| transcription elongation factor GreB [Lactobacillus jensenii
115-3-CHN]
gi|282931733|ref|ZP_06337221.1| transcription elongation factor GreA 1 [Lactobacillus jensenii
208-1]
gi|297205169|ref|ZP_06922565.1| transcription elongation factor GreA [Lactobacillus jensenii
JV-V16]
gi|256615372|gb|EEU20562.1| transcription elongation factor GreB [Lactobacillus jensenii
27-2-CHN]
gi|260547925|gb|EEX23902.1| transcription elongation factor GreB [Lactobacillus jensenii
115-3-CHN]
gi|281304176|gb|EFA96290.1| transcription elongation factor GreA 1 [Lactobacillus jensenii
208-1]
gi|297149747|gb|EFH30044.1| transcription elongation factor GreA [Lactobacillus jensenii
JV-V16]
Length = 153
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 91/147 (61%), Gaps = 7/147 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T +G+ I++E+ +++RP IKA+ EAR+ GDLSEN+EY +A KEL++L E R+
Sbjct: 7 MTPQGYKLIEEEI-ANLKKKRPIKIKALQEARSLGDLSENSEYTEAKKELRHL-ESRLRY 64
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + AE+I + ++ G V L ++ Y+IVG EA++++G +S SP
Sbjct: 65 LDKQLKYAEII--TPNDDKKVDLGKKVKLRFEDDETSDTYEIVGRLEANLEAGKISFDSP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ A++ KE G ++V AP G +YE+
Sbjct: 123 LGAAIMKKEAGTCVTVEAPAG--SYEV 147
>gi|160897466|ref|YP_001563048.1| transcription elongation factor GreB [Delftia acidovorans SPH-1]
gi|160363050|gb|ABX34663.1| transcription elongation factor GreB [Delftia acidovorans SPH-1]
Length = 188
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 91/152 (59%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF++++ EL ERPRI++ + A + GD SEN +Y K+ + R+ L
Sbjct: 30 ITPQGFERLKTELLDLIDNERPRIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S +G ++I FGATV+ V+ + G+++ I+G EAD VS +P
Sbjct: 90 TKRLEIAEVVDPSVHAGSEQIYFGATVTYVD-DEGEERTITIMGIDEADSARQQVSWIAP 148
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++RAL+ +GD +++ P G +T E+L+V +
Sbjct: 149 VSRALLKARVGDEVALPTPAGVRTLEVLEVTY 180
>gi|31544396|ref|NP_852974.1| transcription elongation factor greA [Mycoplasma gallisepticum str.
R(low)]
gi|81420953|sp|Q7NBS1|GREA_MYCGA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|31541240|gb|AAP56542.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Mycoplasma gallisepticum str. R(low)]
gi|284930439|gb|ADC30378.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Mycoplasma gallisepticum str. R(high)]
gi|284931203|gb|ADC31141.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Mycoplasma gallisepticum str. F]
Length = 159
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 82/146 (56%), Gaps = 2/146 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K+Q ELR +R +IK I EAR GDLSENA+Y +AK Q+ E R+ E+
Sbjct: 9 LTQEGLKKLQAELRLLVDVKRADVIKLIQEAREQGDLSENADYDSAKATQSEIESRITEI 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++I+ E+I R+ GA V++ + + Y+IVG E+D +S SP+
Sbjct: 69 QDILNHYEIIKEVDTKNKRVIVGAKVTIHDHSDECNYTYEIVGPIESDPAENKISHESPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
A+A++ K+ G+ S G E Y++
Sbjct: 129 AKAIMDKKEGE--SAEVIGIEHPYKV 152
>gi|317049903|ref|YP_004117551.1| GreA/GreB family elongation factor [Pantoea sp. At-9b]
gi|316951520|gb|ADU70995.1| GreA/GreB family elongation factor [Pantoea sp. At-9b]
Length = 167
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 89/154 (57%), Gaps = 4/154 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++ E E+RP I K +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYNKLRAEHDHLWNEKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ +++D + ++ FGA V VE G+ K ++IVG E +V+ +SI S
Sbjct: 66 RKCLAELKIVDYAPQQEGKVFFGAWVE-VENEQGEVKRFRIVGPDEIYGEVKD-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARALI KE+ D ++VN P G+K + + ++ ++
Sbjct: 124 PMARALIKKEVDDEVTVNTPEGQKLWFVNRIEYV 157
>gi|294341373|emb|CAZ89790.1| Transcription elongation factor greB (Transcript cleavage factor
greB) [Thiomonas sp. 3As]
Length = 188
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +++ EL+ ++ERP++++ +S A GD SEN +Y K+ + R+ L
Sbjct: 34 LTPQGYARLRAELKTLVEDERPKVVETVSWAAKNGDRSENGDYIYGKKRLREIDRRIRFL 93
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S G D++ FGATV + + G + IVG E + G +S SP
Sbjct: 94 TKRLDIAEVVDASLQHGNDQVFFGATVRYAD-DKGAEHTITIVGIDETEPLQGKISWISP 152
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ GD +S+ PGG T EIL+V +
Sbjct: 153 VARALLKAREGDSVSLPTPGGIATLEILEVTY 184
>gi|187478047|ref|YP_786071.1| transcription elongation factor GreB [Bordetella avium 197N]
gi|115422633|emb|CAJ49158.1| transcription elongation factor [Bordetella avium 197N]
Length = 187
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 86/152 (56%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + RM L
Sbjct: 31 MTPEGYARLRDELAHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S D+I FGATV K SG+ + IVG EA+ +G +S SP
Sbjct: 91 TKRLDIAEVVDASLQPNRDQIFFGATVVYAGK-SGEAQRVSIVGVDEAEPLAGKISWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALI GD +++ PGG + +IL+V +
Sbjct: 150 VARALIKAREGDTVTLRTPGGVEALDILEVHY 181
>gi|77361754|ref|YP_341329.1| transcription elongation factor and transcript cleavage
[Pseudoalteromonas haloplanktis TAC125]
gi|76876665|emb|CAI87887.1| transcription elongation factor and transcript cleavage
[Pseudoalteromonas haloplanktis TAC125]
Length = 159
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 81/146 (55%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ ++QQE +RP I K +S A + GD SENA+YQ K L + R+ L
Sbjct: 6 ITREGYLQLQQEHTHLWNVKRPEITKIVSWAASLGDRSENADYQYNKRLLRQIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I ++ID S + ++ FGA V +E G+ K ++IVG E + +SI SP+
Sbjct: 66 RKRIPDLKIIDYSPVQDGKVFFGAWVE-IENEQGETKKFKIVGPDEIYERKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ K++ D V P G+K + +
Sbjct: 125 ARALLKKQVDDEFDVITPQGKKQWYV 150
>gi|256821719|ref|YP_003145682.1| transcription elongation factor GreB [Kangiella koreensis DSM
16069]
gi|256795258|gb|ACV25914.1| transcription elongation factor GreB [Kangiella koreensis DSM
16069]
Length = 162
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 89/150 (59%), Gaps = 3/150 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T+ G +++ EL + + RP + +AI+ A A GD SENAEY K+L+ ++ R+
Sbjct: 7 ITAAGAVRLRNELAYLWKTLRPEVTRAINAAAAEGDRSENAEYIYRKKQLREIDR-RVRY 65
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ VI+ + D+I FGA VSL ++N G + Y++VG E D + +SI SP
Sbjct: 66 LQKRTADLRVIEHTPQEKDKIFFGAQVSLEDEN-GQEIIYRLVGSDEFDHKPHYISIDSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ARAL+ K++ D + + P GEK + I+ +
Sbjct: 125 MARALLKKQIDDEVKLRLPDGEKLFWIMGI 154
>gi|153005528|ref|YP_001379853.1| transcription elongation factor GreB [Anaeromyxobacter sp. Fw109-5]
gi|152029101|gb|ABS26869.1| transcription elongation factor GreB [Anaeromyxobacter sp. Fw109-5]
Length = 169
Score = 86.7 bits (213), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T +GF ++ E +RP+I+ + A A GD SENAEY K+L+ L+ R+
Sbjct: 14 ITPEGFRRLASEHERIWSVDRPKIVAEVEAAAALGDRSENAEYVYGKKKLRELDR-RLRF 72
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V+D R FGA V+ +E + G+ + +++VG E DV +GL+S+ +P
Sbjct: 73 LSERMDALTVVDPRPHPHGRAFFGAWVT-IEDDEGEARTFRLVGPDEFDVAAGLISVEAP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ RAL+GK+ GD + P GE I+ V W
Sbjct: 132 LGRALLGKQEGDTVLFLRPAGEAELTIMAVRW 163
>gi|71906765|ref|YP_284352.1| transcription elongation factor GreB [Dechloromonas aromatica RCB]
gi|71846386|gb|AAZ45882.1| transcription elongation factor GreB [Dechloromonas aromatica RCB]
Length = 185
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G D+++ EL + ERP +++ +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHDRLKSELEHLVKRERPHVVEIVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEVID + D+I FGATV++ N G Y IVG E DV G +S SP
Sbjct: 91 TKRLDVAEVIDPLRQGDNDQIFFGATVTIAGIN-GVANTYTIVGVDETDVSRGRISWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALI GD I +P G + +IL+V++
Sbjct: 150 LARALIKSREGDSIRFQSPLGVREIDILEVVY 181
>gi|160895078|ref|ZP_02075852.1| hypothetical protein CLOL250_02628 [Clostridium sp. L2-50]
gi|156863509|gb|EDO56940.1| hypothetical protein CLOL250_02628 [Clostridium sp. L2-50]
Length = 160
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/149 (38%), Positives = 84/149 (56%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G KI++EL+ + +R I I EAR GDLSENAEY AAK+ Q E R+ +L
Sbjct: 8 VTYTGLKKIEEELQDLKVNKRREIAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ EV+D + + + G TV++ + ++ + IVG EAD+ +S SP+
Sbjct: 68 EAILKNVEVVDEDEVDTEVVGIGRTVTVYDYEFDEEVVFHIVGSTEADIMKNKISDESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL G +G+ + V AP GE Y IL +
Sbjct: 128 GMALKGARVGEEVIVEAPDGEFKYRILDI 156
>gi|15642709|ref|NP_232342.1| transcription elongation factor GreB [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121586617|ref|ZP_01676402.1| transcription elongation factor GreB [Vibrio cholerae 2740-80]
gi|121726717|ref|ZP_01679942.1| transcription elongation factor GreB [Vibrio cholerae V52]
gi|147675721|ref|YP_001218203.1| transcription elongation factor GreB [Vibrio cholerae O395]
gi|153817456|ref|ZP_01970123.1| transcription elongation factor GreB [Vibrio cholerae NCTC 8457]
gi|153821253|ref|ZP_01973920.1| transcription elongation factor GreB [Vibrio cholerae B33]
gi|227082829|ref|YP_002811380.1| transcription elongation factor GreB [Vibrio cholerae M66-2]
gi|229507237|ref|ZP_04396742.1| transcription elongation factor GreB [Vibrio cholerae BX 330286]
gi|229509842|ref|ZP_04399323.1| transcription elongation factor GreB [Vibrio cholerae B33]
gi|229516963|ref|ZP_04406409.1| transcription elongation factor GreB [Vibrio cholerae RC9]
gi|229606743|ref|YP_002877391.1| transcription elongation factor GreB [Vibrio cholerae MJ-1236]
gi|254851252|ref|ZP_05240602.1| transcription elongation factor GreB [Vibrio cholerae MO10]
gi|255744327|ref|ZP_05418279.1| transcription elongation factor GreB [Vibrio cholera CIRS 101]
gi|262158563|ref|ZP_06029678.1| transcription elongation factor GreB [Vibrio cholerae INDRE 91/1]
gi|262170043|ref|ZP_06037732.1| transcription elongation factor GreB [Vibrio cholerae RC27]
gi|298500470|ref|ZP_07010274.1| transcription elongation factor GreB [Vibrio cholerae MAK 757]
gi|25453013|sp|Q9KNL7|GREB_VIBCH RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|9657312|gb|AAF95855.1| transcription elongation factor GreB [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121549176|gb|EAX59209.1| transcription elongation factor GreB [Vibrio cholerae 2740-80]
gi|121630878|gb|EAX63260.1| transcription elongation factor GreB [Vibrio cholerae V52]
gi|126512042|gb|EAZ74636.1| transcription elongation factor GreB [Vibrio cholerae NCTC 8457]
gi|126521185|gb|EAZ78408.1| transcription elongation factor GreB [Vibrio cholerae B33]
gi|146317604|gb|ABQ22143.1| transcription elongation factor GreB [Vibrio cholerae O395]
gi|227010717|gb|ACP06929.1| transcription elongation factor GreB [Vibrio cholerae M66-2]
gi|227014601|gb|ACP10811.1| transcription elongation factor GreB [Vibrio cholerae O395]
gi|229346026|gb|EEO10998.1| transcription elongation factor GreB [Vibrio cholerae RC9]
gi|229353316|gb|EEO18255.1| transcription elongation factor GreB [Vibrio cholerae B33]
gi|229354742|gb|EEO19663.1| transcription elongation factor GreB [Vibrio cholerae BX 330286]
gi|229369398|gb|ACQ59821.1| transcription elongation factor GreB [Vibrio cholerae MJ-1236]
gi|254846957|gb|EET25371.1| transcription elongation factor GreB [Vibrio cholerae MO10]
gi|255737852|gb|EET93245.1| transcription elongation factor GreB [Vibrio cholera CIRS 101]
gi|262021451|gb|EEY40163.1| transcription elongation factor GreB [Vibrio cholerae RC27]
gi|262029724|gb|EEY48373.1| transcription elongation factor GreB [Vibrio cholerae INDRE 91/1]
gi|297540639|gb|EFH76696.1| transcription elongation factor GreB [Vibrio cholerae MAK 757]
Length = 161
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 87/148 (58%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
++ +++D S ++ FGA V +E +G+ K ++IVG +E D + +SI S
Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGEVKKFRIVGPEEIYGDAKD-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ K++ + V+ P G K + I
Sbjct: 124 PMARALLKKQVDEEFQVHTPTGIKEWFI 151
>gi|256844340|ref|ZP_05549826.1| transcription elongation factor GreA [Lactobacillus crispatus
125-2-CHN]
gi|262047271|ref|ZP_06020229.1| transcription elongation factor GreA [Lactobacillus crispatus
MV-3A-US]
gi|295692071|ref|YP_003600681.1| transcription elongation factor [Lactobacillus crispatus ST1]
gi|256613418|gb|EEU18621.1| transcription elongation factor GreA [Lactobacillus crispatus
125-2-CHN]
gi|260572516|gb|EEX29078.1| transcription elongation factor GreA [Lactobacillus crispatus
MV-3A-US]
gi|295030177|emb|CBL49656.1| Transcription elongation factor [Lactobacillus crispatus ST1]
Length = 153
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK + R+ L
Sbjct: 7 MTPEGYQQIEDEI-ARLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ AE++ ++ G TV L + + + Y++VG EAD+ +G VS SP+
Sbjct: 66 GKQLKYAEIV--KAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++ KE G +V AP GE I++V
Sbjct: 124 GQAIMKKEAGTTATVAAPAGEYQVTIVEV 152
>gi|227523817|ref|ZP_03953866.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC
8290]
gi|227089018|gb|EEI24330.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC
8290]
Length = 155
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 87/147 (59%), Gaps = 7/147 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T G+ KI+ E+ + + +RP IK++++ARA GDLSENAEY AAK +L++L E R+
Sbjct: 8 ITKAGYQKIKDEIN-QLENDRPIKIKSLADARALGDLSENAEYSAAKRDLRHL-ESRLRF 65
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + +++ S D + G V+ + + YQIVG E D+ G +SI+SP
Sbjct: 66 LRKELQYSKIYTPS--DNDNVEVGKYVTFEFLDDKSTETYQIVGTPEVDIDDGKISIASP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
I AL+ G+I+++ AP TY++
Sbjct: 124 IGAALLNHHTGEIVTIQAPN--LTYQV 148
>gi|187933763|ref|YP_001884424.1| transcription elongation factor GreA [Clostridium botulinum B str.
Eklund 17B]
gi|238691601|sp|B2TI25|GREA_CLOBB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|187721916|gb|ACD23137.1| transcription elongation factor GreA [Clostridium botulinum B str.
Eklund 17B]
Length = 160
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/149 (37%), Positives = 88/149 (59%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EG++ +L
Sbjct: 9 MTYEGVKKLEGELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAFTEGKILQL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN + A V+D S + D ++ G+ V + + + ++ Y IVG EAD S +S SP+
Sbjct: 69 ENKLKNAVVVDESEIPKDIVSVGSKVKVKDYDFDEEVEYSIVGSAEADPMSFKISNESPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL+GK++GD++ V P G +EIL +
Sbjct: 129 GNALVGKKIGDVVEVVVPDGVSKFEILDI 157
>gi|331003037|ref|ZP_08326549.1| hypothetical protein HMPREF0491_01411 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413081|gb|EGG92456.1| hypothetical protein HMPREF0491_01411 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 164
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 3/144 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + KI+ E+ R+ RP++I+A+ EARA+GDLSEN EY AAK +N NE R+ L
Sbjct: 5 LTKEDIKKIEAEIEERKLVLRPQLIEAVKEARAHGDLSENFEYYAAKREKNKNESRINYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ V + T D++ V L + + + ++IV D G +SI SPI
Sbjct: 65 ERMLRFCNVYEDKT-EDDQVGIDKVVELYFEEDDESEKFKIVTSIRGDSLEGRLSIESPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTY 150
+A++GK+ GD V P G+ Y
Sbjct: 124 GKAIVGKKKGD--RVRVPVGDGGY 145
>gi|253795713|ref|YP_003038809.1| putative transcription elongation factor GreA [Candidatus Hodgkinia
cicadicola Dsem]
gi|253740021|gb|ACT34356.1| putative transcription elongation factor GreA [Candidatus Hodgkinia
cicadicola Dsem]
Length = 155
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 81/135 (60%), Gaps = 2/135 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G+ + +L WR+Q ++P + + AR+ GDLSENA+YQAA+ LNE R+ E+
Sbjct: 6 LTALGYISLVAQLNWRRQHKKPALKAQLKAARSLGDLSENADYQAARREDKLNEARINEI 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ RA++ + + +R ++ +TV L ++ G + IVGD EA V +SS +
Sbjct: 66 LQTLARAKLAPARS-AANRPSYNSTVVL-KRADGKLLAFNIVGDDEAIATEANVGLSSDV 123
Query: 127 ARALIGKELGDIISV 141
AR + K++GD++ V
Sbjct: 124 ARQCLNKKVGDVVVV 138
>gi|17546871|ref|NP_520273.1| transcription elongation factor GreB [Ralstonia solanacearum
GMI1000]
gi|17429171|emb|CAD15859.1| probable transcription elongation factor (transcript cleavage
factor) protein [Ralstonia solanacearum GMI1000]
Length = 187
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 32 ITPAGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I RAEV+D S D+I FGATV+ ++ GD+ IVG E D+ G VS SP
Sbjct: 92 TRRIERAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLDKGQVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARALI GD +++ P G + +IL V +
Sbjct: 151 IARALIKAREGDTVALRTPTGVEPIDILAVTY 182
>gi|294013274|ref|YP_003546734.1| transcription elongation factor GreB [Sphingobium japonicum UT26S]
gi|292676604|dbj|BAI98122.1| transcription elongation factor GreB [Sphingobium japonicum UT26S]
Length = 161
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF K++ E ERP+I++ +S A GD SEN +Y ++ +G++ L
Sbjct: 9 ITPEGFAKLRAEYDQLLGVERPKIVEVVSWAAGNGDRSENGDYLYGRKRMREIDGQLKRL 68
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+D ++ FGATV++ +++ ++ +VG+ E + +G + S+P
Sbjct: 69 SRKMKDAKVVDPRQQPDKSKVYFGATVTIADEDD-KRRTVTLVGNDETEASAGRIGWSTP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL G +GD+ V P GEK YE++++ +
Sbjct: 128 IARALRGAAVGDLRRVMLPAGEKEYEVMEIRY 159
>gi|109896438|ref|YP_659693.1| transcription elongation factor GreB [Pseudoalteromonas atlantica
T6c]
gi|109698719|gb|ABG38639.1| transcription elongation factor GreB [Pseudoalteromonas atlantica
T6c]
Length = 158
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ K+ E ++RP I K ++ A + GD SENA+YQ K + R+ L
Sbjct: 6 ITPEGYKKLNDEHDELWLKQRPEITKIVTWAASLGDRSENADYQYNKRKLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
++ ++++ S ++ FGA V +E + G+ K ++IVG +E D + G +SI S
Sbjct: 66 RKLLPELQIVNYSPQQAGKVFFGAWVE-IENDEGETKQFRIVGPEEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARALI KE+ D+ SV P G K + + +
Sbjct: 124 PMARALIKKEVDDVASVKTPTGYKDWYVTSI 154
>gi|323693914|ref|ZP_08108101.1| transcription elongation factor [Clostridium symbiosum WAL-14673]
gi|323502011|gb|EGB17886.1| transcription elongation factor [Clostridium symbiosum WAL-14673]
Length = 169
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 3/136 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KI++E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 7 LTESDIKKIREEIEYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNRNESRIRYL 66
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
EN+I A V +S SG D + TV+L ++ +++ Y++V + GL+SI SP
Sbjct: 67 ENMIKNARV--VSDKSGSDEVGLNDTVTLYFEDDDEEEVYRLVTSIRGNSLKGLISIESP 124
Query: 126 IARALIGKELGDIISV 141
+ +A+ G + GD + V
Sbjct: 125 LGKAVRGHKEGDSVYV 140
>gi|297581551|ref|ZP_06943474.1| transcription elongation factor GreB [Vibrio cholerae RC385]
gi|297534389|gb|EFH73227.1| transcription elongation factor GreB [Vibrio cholerae RC385]
Length = 160
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 86/148 (58%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
++ +++D S ++ FGA V +E +G+ K ++IVG +E D + +SI S
Sbjct: 66 SKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGEVKKFRIVGPEEIYGDAKD-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ K++ + V P G K + I
Sbjct: 124 PMARALLKKQVDEEFQVQTPTGMKEWFI 151
>gi|194467226|ref|ZP_03073213.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23]
gi|194454262|gb|EDX43159.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23]
Length = 165
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 85/139 (61%), Gaps = 5/139 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T+ G+ +I++++ + Q++RP I+ + ARA GDLSEN EY AK EL++L E R+
Sbjct: 18 MTANGYHEIEEQI-AKLQQQRPAKIEQLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 75
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP
Sbjct: 76 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 133
Query: 126 IARALIGKELGDIISVNAP 144
+ +AL+ K G ++V AP
Sbjct: 134 LGQALLHKTAGTTVTVEAP 152
>gi|92114676|ref|YP_574604.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM
3043]
gi|91797766|gb|ABE59905.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM
3043]
Length = 178
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G+ +++ + +RP + + EA A GD SENA+Y K+ N R+ L
Sbjct: 25 ITARGYARLKGIHEHLSRVKRPALSTKVGEAAALGDRSENADYTYNKKELNRVIARIRYL 84
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+D R+ FGA V+L E + G++ +IVG E D +S+ +P+
Sbjct: 85 GKRLDELQVVDRLPADTSRVYFGAYVTL-EDDDGEEMTIRIVGHDETDTDKRWISVDAPL 143
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+A++GK L + ++VNAPGG+ TY I + +
Sbjct: 144 AQAMLGKGLDEDVTVNAPGGDTTYIITDIAY 174
>gi|323486296|ref|ZP_08091622.1| transcription elongation factor [Clostridium symbiosum WAL-14163]
gi|323400406|gb|EGA92778.1| transcription elongation factor [Clostridium symbiosum WAL-14163]
Length = 178
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/136 (38%), Positives = 82/136 (60%), Gaps = 3/136 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KI++E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 16 LTESDIKKIREEIEYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNRNESRIRYL 75
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
EN+I A V +S SG D + TV+L ++ +++ Y++V + GL+SI SP
Sbjct: 76 ENMIKNARV--VSDKSGSDEVGLNDTVTLYFEDDDEEEVYRLVTSIRGNSLKGLISIESP 133
Query: 126 IARALIGKELGDIISV 141
+ +A+ G + GD + V
Sbjct: 134 LGKAVRGHKEGDSVYV 149
>gi|104781028|ref|YP_607526.1| transcription elongation factor GreB [Pseudomonas entomophila L48]
gi|95110015|emb|CAK14720.1| transcription elongation factor and transcript cleavage
[Pseudomonas entomophila L48]
Length = 157
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITTEGHEALKKELDHLWRVYRPEITQKVTWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ S ++ FGA V +E + GD+ ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDVKVVSYSPQQEGKVFFGAWVE-IENDEGDQLKFRIVGYDEIHGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE GD + V+ P GE T+ +
Sbjct: 125 ARALLKKEEGDEVVVHTPTGEATWYV 150
>gi|78484860|ref|YP_390785.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2]
gi|78363146|gb|ABB41111.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2]
Length = 154
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF ++ +EL + + +RP I++AIS A A GD SENAEY K+ + ++ L
Sbjct: 4 ITQEGFYRLTEELSFLWKTKRPEIVRAISTAAAEGDRSENAEYIYRKKELRETDRKIRYL 63
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + V+ D++ FGA V L+E G +K Y+IVG EA + +S+ SP+
Sbjct: 64 ERHLKDINVVRDKPRQRDKVFFGAYV-LLEDEDGQQKQYRIVGGIEARGEENEISVKSPV 122
Query: 127 ARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
A+ALIGK L + V P K Y IL + +
Sbjct: 123 AQALIGKLLDQDVEVLLPDNRKIHYTILDIKY 154
>gi|319779409|ref|YP_004130322.1| Transcription elongation factor GreB [Taylorella equigenitalis
MCE9]
gi|317109433|gb|ADU92179.1| Transcription elongation factor GreB [Taylorella equigenitalis
MCE9]
Length = 182
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++ +++EL ERP +++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 30 MTVTGYNSLRKELSDLVTVERPEVVQVVSWAASNGDRSENGDYIYGKKRLREIDRRIRFL 89
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEVID S DR+ FGATV+ + N+ D+ IVG EAD +G +S SP
Sbjct: 90 TKRLEIAEVIDPSQQPNKDRVYFGATVTYLNPNN-DEVTVTIVGIDEADPLNGKISWISP 148
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ALI E G I+++ P G++ E+L++++
Sbjct: 149 VAKALIKSEEGQIVTLKTPNGKQEIEVLEIVY 180
>gi|164686645|ref|ZP_02210673.1| hypothetical protein CLOBAR_00238 [Clostridium bartlettii DSM
16795]
gi|164604374|gb|EDQ97839.1| hypothetical protein CLOBAR_00238 [Clostridium bartlettii DSM
16795]
Length = 158
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 89/149 (59%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K+++EL + + +R + + + A ++GDLSENAEY AK Q E ++ +L
Sbjct: 8 LTQEGYNKLEEELEYLKAVKRKEVAERLKVAISFGDLSENAEYDEAKNEQAKLEEQILKL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +A +ID S + + + G+ V + + + ++ Y IVG EAD G +S SP+
Sbjct: 68 DEKLRKAVIIDESQIDLNIVTVGSIVKVFDFDFDEEVEYVIVGSAEADPFEGKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+G +G+ + V P G +++L++
Sbjct: 128 GKALLGARVGETVEVQVPDGVSKFKVLEI 156
>gi|253699374|ref|YP_003020563.1| GreA/GreB family elongation factor [Geobacter sp. M21]
gi|251774224|gb|ACT16805.1| GreA/GreB family elongation factor [Geobacter sp. M21]
Length = 158
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 93/152 (61%), Gaps = 8/152 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
++++G ++Q+ + + ERPR++K +++A A GD SENAEY + K L+ ++ E
Sbjct: 6 ISAEGRKRLQERYDFLWETERPRMVKNMADAAAEGDRSENAEYIYSKKRLREIDR----E 61
Query: 66 LENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L ++ R +V+ + ++ ++FG V+ E G+++ YQ+VG E DV +G +S+
Sbjct: 62 LRHLGDRLKVVKVVYPPLNPSTVSFGCWVTY-EDEEGEERCYQLVGPDEFDVTAGKISVD 120
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +AL+G+++ D I++ P G+ I+ +
Sbjct: 121 SPVGKALLGRKVDDEITIKRPAGDLAVTIVAI 152
>gi|297625161|ref|YP_003706595.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM
17093]
gi|297166341|gb|ADI16052.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM
17093]
Length = 158
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 90/154 (58%), Gaps = 3/154 (1%)
Query: 4 KIPV--TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K PV T +G++KI++ELR+ + +R +I + + A A GDL E+A Y A+ Q+ NE
Sbjct: 3 KKPVYLTPQGYEKIKEELRYLVEVKRQQIAENMGTAIADGDLRESAAYDEARMEQSANEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+A+LE I+ RA V++ GA+++L E SG + + +VG EAD+ +S
Sbjct: 63 RIADLEEILHRAVVVENQEGELAVARLGASLTL-EDESGQQTTFYLVGTHEADIFENRIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ R L+GK +GD +++ Y +++V
Sbjct: 122 DESPLGRELLGKRVGDKVNLALGRTRSEYTVVEV 155
>gi|255282088|ref|ZP_05346643.1| transcription elongation factor GreA [Bryantella formatexigens DSM
14469]
gi|255267407|gb|EET60612.1| transcription elongation factor GreA [Bryantella formatexigens DSM
14469]
Length = 191
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T KI++E+ +R+ R I A+ EARA GDLSEN EY AAK +N NE R+
Sbjct: 28 TLTRSDVRKIEEEIEYRKLVVRKEAIAAVKEARAQGDLSENFEYYAAKRDKNKNESRIRY 87
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE ++ A V+ + G+ + TV + ++ + + Y+IV + SG +SI SP
Sbjct: 88 LERMLKTARVVSDVSRDGE-VGLNNTVEVYFEDDDETETYKIVTSIRGNSMSGKISIESP 146
Query: 126 IARALIGKELGD--IISVNAPGG 146
+ RAL+GK+ GD + VN G
Sbjct: 147 MGRALLGKKAGDRVYVKVNENAG 169
>gi|322421115|ref|YP_004200338.1| GreA/GreB family elongation factor [Geobacter sp. M18]
gi|320127502|gb|ADW15062.1| GreA/GreB family elongation factor [Geobacter sp. M18]
Length = 157
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 92/152 (60%), Gaps = 8/152 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
++++G ++Q+ + ++ERPR++K +++A A GD SENAEY + K L+ ++ E
Sbjct: 5 ISAEGRKRLQERYDFLWEKERPRMVKNMADAAAEGDRSENAEYIYSKKRLREIDR----E 60
Query: 66 LENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L ++ R +V+ + ++ ++FG V+ E G ++ YQ+VG E DV G +S+
Sbjct: 61 LRHLGDRLKVLKVVYPPLNPASVSFGCWVTY-EDEEGGERCYQLVGPDEFDVSLGKISVD 119
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +AL+GK++ D +++ P G+ IL V
Sbjct: 120 SPVGKALLGKKVDDEVTIRRPAGDLAVTILAV 151
>gi|194366636|ref|YP_002029246.1| transcription elongation factor GreB [Stenotrophomonas maltophilia
R551-3]
gi|194349440|gb|ACF52563.1| transcription elongation factor GreB [Stenotrophomonas maltophilia
R551-3]
Length = 168
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T+ G +++ EL WR + RP ++KA++ A A GD SENAEY K+ + R+
Sbjct: 15 ITASGHARLKAELDELWRVR--RPEVVKALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+D + + FGA V L +SG Y+IVG E D G +SI S
Sbjct: 73 YLTKRLESLRVVDTTPTDPQAVFFGAWVELENVDSGQTSRYRIVGPDETDAGLGWISIDS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ K L D SV P G T+ ++ V
Sbjct: 133 PLARALLKKRLDDEFSVELPSGPHTFAVIGV 163
>gi|283769390|ref|ZP_06342289.1| putative transcription elongation factor GreA [Bulleidia extructa
W1219]
gi|283104047|gb|EFC05431.1| putative transcription elongation factor GreA [Bulleidia extructa
W1219]
Length = 157
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI VT +G K+Q E R ++ ++EARA GDLSENA+Y AA+E+Q E R
Sbjct: 4 NKIYVTQEGLKKLQDEYNHLVHVVREQVKTELAEARAQGDLSENADYDAAREMQAQVEAR 63
Query: 63 MAELE-NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+AELE N+ + T + GATV L ++ + Y IVG EAD +G +S
Sbjct: 64 IAELEINLQNYVLIDTTKTKDSTTVRIGATVQLEFLDTKEVNEYMIVGSTEADPLNGKLS 123
Query: 122 ISSPIARALIGKELGDIISVN 142
+P+A+A++ ++GD + VN
Sbjct: 124 NETPLAQAILEHKVGDTVFVN 144
>gi|86146554|ref|ZP_01064876.1| transcription elongation factor GreB [Vibrio sp. MED222]
gi|85835611|gb|EAQ53747.1| transcription elongation factor GreB [Vibrio sp. MED222]
Length = 160
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 83/148 (56%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++ E E+RP I K ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYNKLKAEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ ++D S ++ FGA V +E + G+ K ++IVG +E D + G +SI S
Sbjct: 66 RKFLPDVTIVDYSPQQEGKVFFGAWVE-IENDDGEIKKFRIVGPEEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ KE D +V P G+K + I
Sbjct: 124 PMARALLKKETDDEFTVTTPEGDKEWFI 151
>gi|217969791|ref|YP_002355025.1| transcription elongation factor GreB [Thauera sp. MZ1T]
gi|217507118|gb|ACK54129.1| transcription elongation factor GreB [Thauera sp. MZ1T]
Length = 184
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D ++ EL + ERP++++ ++ A GD SEN +Y K+ + R+ L
Sbjct: 32 MTRRGYDALRVELDQLVRVERPKLVETVAWAAGNGDRSENGDYIYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I AEV+D G +++ FGATVS + ++ +++ QIVG EAD G +S SP
Sbjct: 92 IKRIESAEVVDPERQQGLEQVFFGATVSFSDLDTAEEQTLQIVGVDEADASQGRISWISP 151
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARA++ +GD++ ++P G + EI
Sbjct: 152 LARAVLKARVGDVVRFHSPAGVREIEI 178
>gi|239625679|ref|ZP_04668710.1| GreA/GreB family elongation factor [Clostridiales bacterium
1_7_47_FAA]
gi|239519909|gb|EEQ59775.1| GreA/GreB family elongation factor [Clostridiales bacterium
1_7_47FAA]
Length = 167
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 3/137 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY+AAK+ +N NE R+ L
Sbjct: 5 LTKSDIEKMQEEIEYRKLVVRKEALEAVKEARAHGDLSENFEYKAAKQDKNRNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E +I A + IS S D + G TV + + + + Y++V + GL+SI SP
Sbjct: 65 EKMIKTARI--ISDESKDNEVGLGDTVEIYIPDDDETERYKLVTTVRGNSLQGLISIDSP 122
Query: 126 IARALIGKELGDIISVN 142
+ +A+ ++GD + VN
Sbjct: 123 LGKAIRRHKVGDRVHVN 139
>gi|300690932|ref|YP_003751927.1| transcription elongation factor (transcript cleavage factor)
[Ralstonia solanacearum PSI07]
gi|299077992|emb|CBJ50633.1| Transcription elongation factor (Transcript cleavage factor)
[Ralstonia solanacearum PSI07]
Length = 187
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 32 ITPAGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I +AEV+D S D+I FGATV+ ++ GD+ IVG E D++ G VS SP
Sbjct: 92 TRRIEKAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLEKGHVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARALI GD +++ P G + +IL V +
Sbjct: 151 IARALIKAREGDTVALRTPTGVEQIDILAVTY 182
>gi|225377148|ref|ZP_03754369.1| hypothetical protein ROSEINA2194_02794 [Roseburia inulinivorans DSM
16841]
gi|225211053|gb|EEG93407.1| hypothetical protein ROSEINA2194_02794 [Roseburia inulinivorans DSM
16841]
Length = 167
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 82/135 (60%), Gaps = 1/135 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+++E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTEQDIKKMEEEIEYRKLVVRKNALEAVKEARAHGDLSENFEYHAAKKDKNQNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A++I + + D + TV++ ++ +++ Y+IV + L+S SP+
Sbjct: 65 EKMIRTAKIISTDS-ADDEVGMNNTVTVYFEDDDEEETYKIVTTIRGNSLKNLISNESPL 123
Query: 127 ARALIGKELGDIISV 141
+AL+G ++GD V
Sbjct: 124 GKALLGHKIGDRCEV 138
>gi|163857070|ref|YP_001631368.1| transcription elongation factor GreB [Bordetella petrii DSM 12804]
gi|163260798|emb|CAP43100.1| greB [Bordetella petrii]
Length = 185
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + RM L
Sbjct: 31 MTPAGYARLRDELAHLMNVERPAVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D + D++ FGATV+ ++K GD IVG EA+ +G +S SP
Sbjct: 91 TKRLDIAEVVDPAAQPNRDQVFFGATVTYLDK-GGDTHEVTIVGVDEAEPLAGKISWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALI GD + + PGG + +IL+V +
Sbjct: 150 VARALIKAREGDTVVLRTPGGVEELDILEVRY 181
>gi|114331547|ref|YP_747769.1| transcription elongation factor GreB [Nitrosomonas eutropha C91]
gi|114308561|gb|ABI59804.1| transcription elongation factor GreB [Nitrosomonas eutropha C91]
Length = 182
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 86/152 (56%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ E + ERP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 29 ITPGGYQRLKDEFDQLWKVERPELVKIVSWAASNGDRSENGDYIYGKRRLREIDRRLRFL 88
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AE+ID + D++ FGATV++ + G ++ Y IVG EA+ G +S SP
Sbjct: 89 SRRMDHAEIIDPAQRGECDQVFFGATVTVYDAQ-GKEQTYSIVGMDEAEPSCGRISWISP 147
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ GD++S+ PGG + E++++ +
Sbjct: 148 LARALLKAREGDVVSLQTPGGLEELEVIKIRY 179
>gi|225573152|ref|ZP_03781907.1| hypothetical protein RUMHYD_01343 [Blautia hydrogenotrophica DSM
10507]
gi|225039481|gb|EEG49727.1| hypothetical protein RUMHYD_01343 [Blautia hydrogenotrophica DSM
10507]
Length = 167
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +KI++E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTKNDVEKIKEEIEYRKLVVRKEALEAVKEARAHGDLSENFEYHAAKKDKNRNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ +E++ + D + TV L + + + +++V + GL+S SP+
Sbjct: 65 ERMLKTSEIVSDES-KDDEVGLFNTVELYFEEDDETEKFKVVTSVRGNSLKGLISTESPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+A++GK+ GD + + Y +++
Sbjct: 124 GKAIMGKKTGDRVEIKVSDSYSYYVVIK 151
>gi|307132913|ref|YP_003884929.1| transcription elongation factor GreB [Dickeya dadantii 3937]
gi|306530442|gb|ADN00373.1| Transcription elongation factor GreB [Dickeya dadantii 3937]
Length = 166
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D S ++ FGA V VE GD K ++IVG E + +SI +P+
Sbjct: 66 RKRLQVVRVVDYSPQQDGKVFFGAWVE-VENEDGDVKRFRIVGPDEIYGRKDYISIDAPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+ K + + VN P G K + + ++
Sbjct: 125 ARALLKKAVDEEAVVNTPTGPKVWYVNKI 153
>gi|148976494|ref|ZP_01813190.1| transcription elongation factor GreB [Vibrionales bacterium SWAT-3]
gi|145964070|gb|EDK29327.1| transcription elongation factor GreB [Vibrionales bacterium SWAT-3]
Length = 160
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+++++ E E+RP I K ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYNRLKAEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ ++D S ++ FGA V +E + G+ K ++IVG +E D + G +SI S
Sbjct: 66 RKFLPDVTIVDYSPQQEGKVFFGAWVE-IENDDGEIKKFRIVGPEEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ KE+ D +V P G+K + I
Sbjct: 124 PMARALLKKEVDDEFTVKTPEGDKEWFI 151
>gi|28896926|ref|NP_796531.1| transcription elongation factor GreB [Vibrio parahaemolyticus RIMD
2210633]
gi|153837875|ref|ZP_01990542.1| transcription elongation factor GreB [Vibrio parahaemolyticus
AQ3810]
gi|260365887|ref|ZP_05778381.1| transcription elongation factor GreB [Vibrio parahaemolyticus
K5030]
gi|260877826|ref|ZP_05890181.1| transcription elongation factor GreB [Vibrio parahaemolyticus
AN-5034]
gi|260895525|ref|ZP_05904021.1| transcription elongation factor GreB [Vibrio parahaemolyticus
Peru-466]
gi|260902549|ref|ZP_05910944.1| transcription elongation factor GreB [Vibrio parahaemolyticus
AQ4037]
gi|31076677|sp|Q87TB8|GREB_VIBPA RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|28805134|dbj|BAC58415.1| transcription elongation factor GreB [Vibrio parahaemolyticus RIMD
2210633]
gi|149748738|gb|EDM59583.1| transcription elongation factor GreB [Vibrio parahaemolyticus
AQ3810]
gi|308088536|gb|EFO38231.1| transcription elongation factor GreB [Vibrio parahaemolyticus
Peru-466]
gi|308089794|gb|EFO39489.1| transcription elongation factor GreB [Vibrio parahaemolyticus
AN-5034]
gi|308109683|gb|EFO47223.1| transcription elongation factor GreB [Vibrio parahaemolyticus
AQ4037]
gi|308113424|gb|EFO50964.1| transcription elongation factor GreB [Vibrio parahaemolyticus
K5030]
gi|328471701|gb|EGF42578.1| transcription elongation factor GreB [Vibrio parahaemolyticus
10329]
Length = 163
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QE + E+RP I K ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYNKLKQEHDYLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ ++D S ++ FGA V +E +GD K ++IVG +E D + +SI S
Sbjct: 66 RKFLPEVTIVDYSPQQEGKVFFGAWVE-IENEAGDVKKFRIVGPEEIYGDAKD-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARA++ K++ + +V P G+K + I
Sbjct: 124 PMARAMLKKQVDEEFTVRTPEGDKEWFI 151
>gi|291460291|ref|ZP_06599681.1| transcription elongation factor GreA [Oribacterium sp. oral taxon
078 str. F0262]
gi|291417046|gb|EFE90765.1| transcription elongation factor GreA [Oribacterium sp. oral taxon
078 str. F0262]
Length = 162
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/149 (38%), Positives = 79/149 (53%), Gaps = 2/149 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +K + EL + R I I EAR GDLSENAEY AAK+ Q E R+ +L
Sbjct: 9 LTRAGLNKYEAELHDLKVNRRQEIAGKIKEAREQGDLSENAEYDAAKDEQREIEERIVQL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ AEV+D T G I G V L++K ++ Y IVG EA+ G +S SP+
Sbjct: 69 ELLLKNAEVVD-DTEEGS-INIGCHVKLLDKEFDEEVEYTIVGSTEANSLQGKISNESPV 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+ GD + V G + +L V
Sbjct: 127 GKALLHHREGDTVEVETQNGVLQFTVLSV 155
>gi|33592252|ref|NP_879896.1| transcription elongation factor GreB [Bordetella pertussis Tohama
I]
gi|33595908|ref|NP_883551.1| transcription elongation factor GreB [Bordetella parapertussis
12822]
gi|33601290|ref|NP_888850.1| transcription elongation factor GreB [Bordetella bronchiseptica
RB50]
gi|33565987|emb|CAE36540.1| transcription elongation factor [Bordetella parapertussis]
gi|33571897|emb|CAE41415.1| transcription elongation factor [Bordetella pertussis Tohama I]
gi|33575726|emb|CAE32803.1| transcription elongation factor [Bordetella bronchiseptica RB50]
gi|332381670|gb|AEE66517.1| transcription elongation factor GreB [Bordetella pertussis CS]
Length = 184
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + RM L
Sbjct: 31 MTPQGYARLRDELSHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D + D++ FGATV +++ +G+++ IVG EA+ +G +S SP
Sbjct: 91 TKRLDIAEVVDPAAQPNRDQVFFGATVLYMDR-AGEERTVTIVGVDEAEPLAGKISWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL GD +++ PGG + EIL+V +
Sbjct: 150 VARALTKAHEGDTVTLRTPGGVEELEILEVRY 181
>gi|227871734|ref|ZP_03990142.1| possible transcription elongation factor [Oribacterium sinus F0268]
gi|227842422|gb|EEJ52644.1| possible transcription elongation factor [Oribacterium sinus F0268]
Length = 167
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 86/147 (58%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + KI+ E++ R+ E RP++I+A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTREDVRKIEAEIQKRKLEIRPKLIEAVKEARAQGDLSENFEYYAAKKEKNQNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A+VI + G + TV + +++ Y++V G +S SP+
Sbjct: 65 ERVLKFAKVISTKSEEGV-VGINDTVVVYFPEDKEEECYRLVTSIRGQSLEGRISNQSPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153
+AL+GK +G+ + V GG +Y +L
Sbjct: 124 GKALMGKRVGEEVEVFLEGG-SSYTVL 149
>gi|325928883|ref|ZP_08190046.1| transcription elongation factor GreB [Xanthomonas perforans 91-118]
gi|325540744|gb|EGD12323.1| transcription elongation factor GreB [Xanthomonas perforans 91-118]
Length = 198
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 4/154 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+
Sbjct: 45 ITPEGHARLKAELDDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 102
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S
Sbjct: 103 YLSKRLEALRVVDTAPTDANAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDS 162
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARAL+ K + D + P G+ T+ ++ V ++
Sbjct: 163 PLARALLKKRVDDEFDAHLPAGKHTFVVVSVQYV 196
>gi|289168331|ref|YP_003446600.1| transcription elongation factor related to GreA [Streptococcus
mitis B6]
gi|288907898|emb|CBJ22738.1| transcription elongation factor related to GreA [Streptococcus
mitis B6]
Length = 150
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 71/107 (66%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +++ I AR+YGDLSEN+EY+AAK+ Q EG+++ LE I AE+++ +++ D +
Sbjct: 28 RPEVVERIKIARSYGDLSENSEYEAAKDEQAFVEGQISSLETKIRYAEIVNSDSVAQDEV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
A G TV++ E +++ Y IVG AD +G VS SPI +AL+ +
Sbjct: 88 AIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGKVSNESPIGQALLAR 134
>gi|262392646|ref|YP_003284500.1| transcription elongation factor GreB [Vibrio sp. Ex25]
gi|262336240|gb|ACY50035.1| transcription elongation factor GreB [Vibrio sp. Ex25]
Length = 163
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QE + E+RP I K ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYNKLKQEHDYLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ ++D S ++ FGA V +E +G+ K ++IVG +E D + +SI S
Sbjct: 66 RKFLPEVTIVDYSPQQEGKVFFGAWVE-IENEAGEVKKFRIVGPEEIYGDAKD-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARA++ K++ + +V P GEK + I
Sbjct: 124 PMARAMLKKQVDEEFTVRTPEGEKEWFI 151
>gi|330826535|ref|YP_004389838.1| transcription elongation factor GreB [Alicycliphilus denitrificans
K601]
gi|329311907|gb|AEB86322.1| transcription elongation factor GreB [Alicycliphilus denitrificans
K601]
Length = 188
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +++ EL EERP+++ + A + GD SEN +Y K+ + R+ L
Sbjct: 30 ITPQGYARLRAELLSLIDEERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS-- 123
+ AEV+D S +G D+I FGATV+ V+ + G ++ I+G EAD +GL IS
Sbjct: 90 TKRLEIAEVVDPSVHAGSDQIFFGATVTYVD-DEGVERTVTILGVDEAD--NGLQQISWI 146
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ GD +S+ P G +T EIL V +
Sbjct: 147 SPVARALLKAREGDEVSLQTPAGTRTLEILSVHY 180
>gi|311107031|ref|YP_003979884.1| transcription elongation factor GreB [Achromobacter xylosoxidans
A8]
gi|310761720|gb|ADP17169.1| transcription elongation factor GreB [Achromobacter xylosoxidans
A8]
Length = 183
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+++++ EL ERP +++ +S A + GD SEN +Y K+ + RM L
Sbjct: 31 MTPGGYERLRSELTHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D + D++ FGATV L +G++ N IVG EA+ +G +S SP
Sbjct: 91 TKRLDIAEVVDPAAQPNRDQVFFGATV-LYSDKAGEEHNVTIVGVDEAEPLAGKISWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALI + GD + + PGG + +IL V +
Sbjct: 150 VARALIKAKEGDTVVLRTPGGIEELDILDVSY 181
>gi|255671638|gb|ACU26399.1| transcription elongation factor [uncultured bacterium
HF186_25m_30B18]
gi|255671676|gb|ACU26436.1| transcription elongation factor [uncultured bacterium
HF186_75m_14K15]
gi|255671727|gb|ACU26485.1| transcription elongation factor [uncultured bacterium
HF186_25m_13D19]
Length = 163
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF++++ E ERP I+ ++ A A GD SENAEY K+ + R+ L
Sbjct: 8 ITPRGFNRLRAEHDQLWFVERPHIVDEVARAAAMGDRSENAEYIYGKKRLREIDRRLRWL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ E++D + G+RI FGATV+L + G +K +VG E +V +S SP+
Sbjct: 68 NKRLDMTEIVDPAIDRGERIFFGATVTLGYMD-GTEKQVALVGVDEIEVDKQRISWRSPL 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
R LIGK GD +++N G EIL+V ++
Sbjct: 127 GRLLIGKSEGDEVTLNHAGEVTPIEILEVAYL 158
>gi|168183357|ref|ZP_02618021.1| transcription elongation factor GreA [Clostridium botulinum Bf]
gi|237793993|ref|YP_002861545.1| transcription elongation factor GreA [Clostridium botulinum Ba4
str. 657]
gi|182673543|gb|EDT85504.1| transcription elongation factor GreA [Clostridium botulinum Bf]
gi|229261106|gb|ACQ52139.1| transcription elongation factor GreA [Clostridium botulinum Ba4
str. 657]
Length = 154
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 88/152 (57%), Gaps = 4/152 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD--KKNYQIVGDQEADVQSGLVSISS 124
+I+ A VID + D+ G K D + N +V +AD ++ L+S+ S
Sbjct: 65 LTMISTASVID--EKNQDKSVLGVNSKCKIKFVEDEFETNVSLVTTMDADPENMLISVES 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +AL+GK++GDI V+APG + T E+L+++
Sbjct: 123 DLGKALMGKKVGDIAEVDAPGEKYTVEVLEII 154
>gi|319761755|ref|YP_004125692.1| transcription elongation factor greb [Alicycliphilus denitrificans
BC]
gi|317116316|gb|ADU98804.1| transcription elongation factor GreB [Alicycliphilus denitrificans
BC]
Length = 188
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +++ EL EERP+++ + A + GD SEN +Y K+ + R+ L
Sbjct: 30 ITPQGYARLRAELLSLIDEERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS-- 123
+ AEV+D S +G D+I FGATV+ V+ + G ++ I+G EAD +GL IS
Sbjct: 90 TKRLEIAEVVDPSVHAGSDQIFFGATVTYVD-DEGVERTVTILGVDEAD--NGLQQISWI 146
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ GD +S+ P G +T EIL V +
Sbjct: 147 SPVARALLKAREGDEVSLQTPAGTRTLEILSVHY 180
>gi|91224988|ref|ZP_01260247.1| transcription elongation factor GreB [Vibrio alginolyticus 12G01]
gi|269965882|ref|ZP_06179975.1| Transcription elongation factor greB [Vibrio alginolyticus 40B]
gi|91190234|gb|EAS76504.1| transcription elongation factor GreB [Vibrio alginolyticus 12G01]
gi|269829435|gb|EEZ83676.1| Transcription elongation factor greB [Vibrio alginolyticus 40B]
Length = 163
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QE + E+RP I K ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYNKLKQEHDYLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ ++D S ++ FGA V +E +G+ K ++IVG +E D + +SI S
Sbjct: 66 RKFLPEVTIVDYSPQQEGKVFFGAWVE-IENEAGEVKKFRIVGPEEIYGDAKD-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARA++ K++ + +V P GEK + I
Sbjct: 124 PMARAMLKKQVDEEFTVRTPEGEKEWFI 151
>gi|256849256|ref|ZP_05554689.1| transcription elongation factor GreA [Lactobacillus crispatus
MV-1A-US]
gi|312978351|ref|ZP_07790093.1| transcription elongation factor GreA 1 (Transcript cleavage
factorgreA 1) [Lactobacillus crispatus CTV-05]
gi|256714032|gb|EEU29020.1| transcription elongation factor GreA [Lactobacillus crispatus
MV-1A-US]
gi|310894694|gb|EFQ43766.1| transcription elongation factor GreA 1 (Transcript cleavage
factorgreA 1) [Lactobacillus crispatus CTV-05]
Length = 153
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK + R+ L
Sbjct: 7 MTPEGYQQIEDEI-ARLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ AE++ ++ G TV L + + + Y++VG EAD+ +G VS SP+
Sbjct: 66 GKQLKYAEIV--KAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++ KE G +V AP GE I++V
Sbjct: 124 GQAIMKKEAGTTATVAAPVGEYQVTIVEV 152
>gi|292670844|ref|ZP_06604270.1| transcription elongation factor GreA [Selenomonas noxia ATCC 43541]
gi|292647465|gb|EFF65437.1| transcription elongation factor GreA [Selenomonas noxia ATCC 43541]
Length = 156
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+ +T G++K+ ++L + + R + + + A A GDLSEN+EY AK Q EG +
Sbjct: 5 KVMLTEDGYNKLVEKLDYLKSVRRIEVAERLKAAIALGDLSENSEYDDAKNEQAFLEGEI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE I +++I G + G+ V + + +++ + IVG EAD G +S
Sbjct: 65 QELETKIRNSDII--KAGDGKSVTMGSRVKVKDLEFDEEETFLIVGSTEADPDEGKISNE 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ AL+G+++ +I VNAP G Y+I+ +
Sbjct: 123 SPLGMALLGQKINRVIKVNAPAGIIQYKIIDI 154
>gi|84386352|ref|ZP_00989380.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
gi|84378776|gb|EAP95631.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
Length = 165
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G++K++ E E+RP I K ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ISREGYNKLKAEHDHLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ ++D S ++ FGA V +E +GD K ++IVG +E D + G +SI S
Sbjct: 66 RKFLPEVTIVDYSPQQEGKVFFGAWVE-IENQAGDVKKFRIVGPEEIYGDAK-GYISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ KE+ D V P G K + I
Sbjct: 124 PMARALLKKEVDDEFEVKTPDGVKEWYI 151
>gi|218282252|ref|ZP_03488551.1| hypothetical protein EUBIFOR_01133 [Eubacterium biforme DSM 3989]
gi|218216790|gb|EEC90328.1| hypothetical protein EUBIFOR_01133 [Eubacterium biforme DSM 3989]
Length = 162
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 84/144 (58%), Gaps = 5/144 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K VT +G++ + E + R +I + EARA GDLSENA+Y AA+E Q EGR
Sbjct: 4 EKFYVTQEGYNDLVNEHENLVHKVRQEVIVELQEARAQGDLSENADYDAAREHQAQVEGR 63
Query: 63 MAELENIITRAEVIDISTMSGDR-----IAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
+ ELE +I AE+I S D+ + G+TV +++ + + + IVG EAD +
Sbjct: 64 IRELEAMIKNAEIITESADVEDKKKKNVVKLGSTVKILDLSDNQEVTFNIVGTIEADPFN 123
Query: 118 GLVSISSPIARALIGKELGDIISV 141
G +S ++P+A ++ ++GD+ +V
Sbjct: 124 GKLSNTTPLAEVIMDHKVGDVCTV 147
>gi|78048442|ref|YP_364617.1| transcription elongation factor GreB [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036872|emb|CAJ24565.1| transcription elongation factor [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 168
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 86/154 (55%), Gaps = 4/154 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+
Sbjct: 15 ITPEGHARLKAELDDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S
Sbjct: 73 YLSKRLEALRVVDTAPTDANAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARAL+ K + D + P G+ T+ ++ V ++
Sbjct: 133 PLARALLKKRVDDEFDAHLPAGKHTFVVVSVQYV 166
>gi|15639013|ref|NP_218459.1| transcription elongation factor (greA) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189025253|ref|YP_001933025.1| transcription elongation factor GreA [Treponema pallidum subsp.
pallidum SS14]
gi|7387718|sp|O83063|GREA_TREPA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238689311|sp|B2S1W7|GREA_TREPS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|3322274|gb|AAC65015.1| transcription elongation factor (greA) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189017828|gb|ACD70446.1| transcription elongation factor GreA [Treponema pallidum subsp.
pallidum SS14]
Length = 162
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 81/149 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT+K + ++EL+ P + I A GDL ENAEY+AA+E Q + L
Sbjct: 9 VTAKMLNAKKKELQDLLDVRIPENSREIGRALELGDLRENAEYKAAREEQTRLNNMVTRL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I RA+V D +T+ R++FG +SL SG+ + Y I+G E+ + G++S SP+
Sbjct: 69 QEEIERAQVFDPTTVVAGRVSFGTVISLKNHTSGEDETYTILGPWESAPERGIISYMSPL 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
L+ ++ G+ ++ EK YEIL +
Sbjct: 129 GSNLLNRKTGEQLAFTVGEHEKVYEILSI 157
>gi|294155490|ref|YP_003559874.1| transcription elongation factor GreA [Mycoplasma crocodyli MP145]
gi|291600011|gb|ADE19507.1| transcription elongation factor GreA [Mycoplasma crocodyli MP145]
Length = 160
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 2/143 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI + + +K ++E ERP I A+ +ARA GDLSENAEY AA++ Q + EGR
Sbjct: 8 EKIFLAKETLEKYKKEYDHLVNVERPAIQAALKDARAQGDLSENAEYDAARDKQGVIEGR 67
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE+I+ +A +I+ T +I G+TV+ + I+G +A+ +S
Sbjct: 68 ITELESILDKAVIIE--TSKDGKIGIGSTVTYFSHLDKQQHIVTIMGSHDANPFENKISN 125
Query: 123 SSPIARALIGKELGDIISVNAPG 145
SP+A A++ +E G+ I V+AP
Sbjct: 126 ESPLAVAMLDREKGEKIEVDAPS 148
>gi|160892694|ref|ZP_02073484.1| hypothetical protein CLOL250_00224 [Clostridium sp. L2-50]
gi|156865735|gb|EDO59166.1| hypothetical protein CLOL250_00224 [Clostridium sp. L2-50]
Length = 195
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 86/147 (58%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K+++E+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 35 LTESDIKKMEEEIEYRKVVVRKEKLEAVKEARAQGDLSENFEYYAAKKDKNANEKRIRYL 94
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ AE+I + + D + TV + + ++ Y+IV DV +G++S SP+
Sbjct: 95 DRMVRTAEIIKDES-ADDEVGLNNTVRVYFEEDEEEDTYRIVTTVREDVLNGIISNISPM 153
Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153
+AL+G ++GD + V PG + I+
Sbjct: 154 GKALLGHKVGDRVEV-VPGKGDPFHIV 179
>gi|183221706|ref|YP_001839702.1| fused transcript cleavage factor/unknown domain fusion protein
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|189911782|ref|YP_001963337.1| transcript cleavage factor/unknown domain fusion protein
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167776458|gb|ABZ94759.1| greA transcription elongation factor-related protein [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Ames)']
gi|167780128|gb|ABZ98426.1| Transcriptional elongation factor, GreA/GreB family [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 921
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 82/153 (53%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + VT + F+ + E E + I EA+ GDL ENAEY+AA E Q +
Sbjct: 759 DVVLVTRRAFNAKKLEFEHLVNVEMAENSRDIGEAQEKGDLRENAEYKAAMEKQAQLQAA 818
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LE + A ++D+S + +++ G TV L K +G+ Y I+G +AD + ++S
Sbjct: 819 IKRLEAELKSARILDLSDVKTEKVGIGTTVRLKNKQTGESVTYSILGAWDADTEKNIISY 878
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+A++L+GK G+ ++ E YE+L +
Sbjct: 879 QSPLAKSLLGKHTGNEATLVFGSTETVYEVLDI 911
>gi|313906219|ref|ZP_07839565.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6]
gi|313468949|gb|EFR64305.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6]
Length = 167
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K+Q+E+ R ERP+I+KA+ EARA GDLSEN EY AA++ N R+ L
Sbjct: 5 LTRSDIRKMQEEIDHRTLVERPKILKAVQEARAQGDLSENFEYYAARKANRENNSRINYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+I A +++ + + D++ V++ + + + Y+IV AD G ++ +SP+
Sbjct: 65 TKMIETAIIVEDRS-AEDQVGLNKKVTVKFPDEEETETYKIVTSVRADSMEGRITPNSPL 123
Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQV 155
RAL+GK GD+ V E EI+QV
Sbjct: 124 GRALMGKRAGDLAHVKVNDKLEYDVEIVQV 153
>gi|310820881|ref|YP_003953239.1| transcription elongation factor GreB [Stigmatella aurantiaca
DW4/3-1]
gi|309393953|gb|ADO71412.1| Transcription elongation factor GreB [Stigmatella aurantiaca
DW4/3-1]
Length = 178
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ +EL ERP++ +S A A GD SENAEY K+ + R+ L
Sbjct: 27 LTRLGAERMHRELLRLLNVERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRRIRFL 86
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ + A ++ + + R+ FGATV+L E G + YQIVG E D Q G +S+ SP
Sbjct: 87 QKRLDTATIVTPAEQTDQGRVYFGATVTL-EDEDGVQTTYQIVGSDEIDTQGGRISVESP 145
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I +AL+ K +GD + V P GE I+ + ++
Sbjct: 146 IGKALLRKAVGDSVEVMRPRGEIELTIVAIAYM 178
>gi|220917962|ref|YP_002493266.1| transcription elongation factor GreB [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955816|gb|ACL66200.1| transcription elongation factor GreB [Anaeromyxobacter dehalogenans
2CP-1]
Length = 163
Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 3/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T +GF ++ E E RPRI+ + A A GD SENAEY K+L+ L+ R+
Sbjct: 8 ITPEGFRRLAAEHARIWTELRPRIVAEVEAAAALGDRSENAEYIYGKKKLRELDR-RLRF 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V++ R FGA V+ VE+ G + ++VG E DV +GL+S+ +P
Sbjct: 67 LSEKMDSLSVVEPRAHPDGRAFFGAWVT-VEQEDGQARRVRLVGPDEFDVAAGLISVDAP 125
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ RAL+GK GD++ V+ P G +++V W
Sbjct: 126 LGRALLGKREGDVVVVHRPAGMVELTVVEVSW 157
>gi|170693644|ref|ZP_02884802.1| transcription elongation factor GreB [Burkholderia graminis C4D1M]
gi|170141426|gb|EDT09596.1| transcription elongation factor GreB [Burkholderia graminis C4D1M]
Length = 206
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL ERP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 49 ITPAGYRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 108
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AE++D S D++ FGATV ++ GD+ IVG E D+ G VS SP
Sbjct: 109 TKRLDLAEIVDSSKQENVDQVFFGATVEYATQD-GDEHTVTIVGIDEVDLDIGHVSWISP 167
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IARAL+ ++GD +++ P G + +IL V
Sbjct: 168 IARALLKAKVGDTVTLYTPAGPQPIDILDV 197
>gi|323527030|ref|YP_004229183.1| transcription elongation factor GreB [Burkholderia sp. CCGE1001]
gi|323384032|gb|ADX56123.1| transcription elongation factor GreB [Burkholderia sp. CCGE1001]
Length = 189
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL EERP +++ +S A + GD SEN +Y K + R+ L
Sbjct: 32 ITPAGYRRMRDELLHLIDEERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S D++ FGATV ++ G++ IVG E D+ G VS SP
Sbjct: 92 TKRLDLAEVVDSSKQENVDQVFFGATVEYATED-GEEHTVTIVGIDEVDLDVGHVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ ++GD +++ P G + +IL V +
Sbjct: 151 IARALLKAKVGDTVTLYTPAGPQPIDILDVKY 182
>gi|94309804|ref|YP_583014.1| transcription elongation factor GreB [Cupriavidus metallidurans
CH34]
gi|93353656|gb|ABF07745.1| Transcription elongation factor [Cupriavidus metallidurans CH34]
Length = 186
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G+ +++ EL ERP I++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 32 ITAAGYKRLRDELMHLIDVERPDIVQIVSWAASNGDRSENGDYLYGKKRMREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTMSG--DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ +AEV+D S M G D+I FGATV+ + SG++ IVG E D+ S VS S
Sbjct: 92 TRRLDKAEVVDPS-MQGDNDQIFFGATVTYANQ-SGEETTITIVGMDEVDLDSNHVSWIS 149
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
PIA+ALI GD + + P G + +IL+V +
Sbjct: 150 PIAKALIKAREGDTVPLRTPAGIEQIDILEVRY 182
>gi|332995753|gb|AEF05808.1| transcription elongation factor GreB [Alteromonas sp. SN2]
Length = 159
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 80/147 (54%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ QE E+RP I K ++ A GD SENA+Y K L + R+ L
Sbjct: 6 ITRAGYQRLVQEHDHLWFEKRPEITKIVTWAAGLGDRSENADYTFNKRLLRQIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLVSISSP 125
++ +++D S ++ FGA V +E G+ K ++IVG +E D Q +SI SP
Sbjct: 66 RKLLPELKIVDYSAEQEGKVFFGAWVE-IENYEGEVKRFRIVGPEEIYDDQKKYISIDSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+GK++ + V P G K + I
Sbjct: 125 MARALLGKQIDEDFGVTTPDGFKLWYI 151
>gi|260438639|ref|ZP_05792455.1| transcription elongation factor GreA [Butyrivibrio crossotus DSM
2876]
gi|292809233|gb|EFF68438.1| transcription elongation factor GreA [Butyrivibrio crossotus DSM
2876]
Length = 166
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 3/154 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D++ T K+Q+E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE
Sbjct: 1 MFDEL--TENDIKKMQEEIEYRKVVLRKELLEHVKEARAHGDLSENFEYHAAKKEKNRNE 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE +I A VI + + D + V L ++ + + ++IV + +GL+
Sbjct: 59 SRIRYLEKMIKTANVISDES-ADDEVGLNNKVELYFEDDDETETFKIVTTVRGNSLNGLI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
S SPI +A++ + GD + V G Y +++
Sbjct: 118 SNESPIGKAVLSHKAGDRVFVEVSPGNGYYVVIK 151
>gi|160881677|ref|YP_001560645.1| transcription elongation factor GreA [Clostridium phytofermentans
ISDg]
gi|254799557|sp|A9KIP3|GREA_CLOPH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|160430343|gb|ABX43906.1| transcription elongation factor GreA [Clostridium phytofermentans
ISDg]
Length = 160
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 85/149 (57%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL+ + +R + + I EAR GDLSENAEY AAK+ Q E R+ E+
Sbjct: 8 LTYEGLKQLEDELQDLKVNKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I+ AEV+ + D + G V +++ D+ Y+IVG EA+ G +S SP+
Sbjct: 68 DKILKNAEVVVEDEVDVDTVNIGCLVRILDMEFNDELEYKIVGSTEANSLKGKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ALIG D+I + G Y++L++
Sbjct: 128 GKALIGARKDDVIEIEINGNSFKYKVLEI 156
>gi|291561619|emb|CBL40418.1| Transcription elongation factor [butyrate-producing bacterium
SS3/4]
Length = 167
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 79/135 (58%), Gaps = 1/135 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K+++E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTKNDIKKMEEEIEYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNKNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A+V+ + D + TV + ++ + + Y+IV + GL+S SP+
Sbjct: 65 ERMIRTAKVVSDES-KDDEVGLYNTVDVYFEDDDETETYKIVTTIRGNSLKGLISSESPL 123
Query: 127 ARALIGKELGDIISV 141
RAL+G ++GD + V
Sbjct: 124 GRALLGHKVGDRVHV 138
>gi|260771984|ref|ZP_05880901.1| transcription elongation factor GreB [Vibrio metschnikovii CIP
69.14]
gi|260612851|gb|EEX38053.1| transcription elongation factor GreB [Vibrio metschnikovii CIP
69.14]
Length = 158
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 4/148 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K++QE E+RP I K ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITRAGYEKLKQEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
++ +++D S ++ FGA V +E +G+ K +IVG +E D + +SI S
Sbjct: 66 RKLLPELKIVDYSPQQEGKVFFGAWVE-IENEAGEMKTLRIVGPEEIYGDAKD-YISIDS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ARAL+ K++ + ++V P G+K + I
Sbjct: 124 PMARALLKKQVDEEVTVKTPTGDKLWFI 151
>gi|296137091|ref|YP_003644333.1| GreA/GreB family elongation factor [Thiomonas intermedia K12]
gi|295797213|gb|ADG32003.1| GreA/GreB family elongation factor [Thiomonas intermedia K12]
Length = 187
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL+ ++ERP++++ +S A GD SEN +Y K+ + R+ L
Sbjct: 33 LTPLGYARLRAELKTLVEDERPKVVETVSWAAKNGDRSENGDYIYGKKRLREIDRRIRFL 92
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S G D++ FGATV + + G + IVG E + G +S SP
Sbjct: 93 TKRLDIAEVVDASLQHGNDQVFFGATVRYAD-DKGAEHTITIVGIDETEPLQGKISWISP 151
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ GD +S+ PGG T EIL+V +
Sbjct: 152 VARALLKAREGDSVSLPTPGGIATLEILEVSY 183
>gi|332295594|ref|YP_004437517.1| transcription elongation factor GreA [Thermodesulfobium narugense
DSM 14796]
gi|332178697|gb|AEE14386.1| transcription elongation factor GreA [Thermodesulfobium narugense
DSM 14796]
Length = 159
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 83/147 (56%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + I +T +G+D+++ EL + + + I + I EA+ + + N EY+ AK Q +
Sbjct: 1 MKEIINLTQEGYDRLKNELEYLRDVKLKEISERIQEAKDFAEDFGNLEYEEAKSEQAMVL 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE ++ A +ID + R+ G V + + N K Y I+ EAD +G +
Sbjct: 61 ARVNELEAQLSNARIIDKDKIEISRVGIGCKVVVKDLNKKTIKEYTILEPIEADPVNGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGE 147
S SP+ +AL GK++GD ++V+ PGG+
Sbjct: 121 SFQSPVGKALFGKQVGDEVTVHTPGGQ 147
>gi|266619156|ref|ZP_06112091.1| transcription elongation factor GreA [Clostridium hathewayi DSM
13479]
gi|288869302|gb|EFD01601.1| transcription elongation factor GreA [Clostridium hathewayi DSM
13479]
Length = 186
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DK+ T K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE
Sbjct: 20 MYDKL--TKNDIQKMQEEIDYRKLVVRREALEAVKEARAHGDLSENFEYHAAKKDKNQNE 77
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE +I A+++ + D I TV L ++ + + Y++V + GL+
Sbjct: 78 SRIRYLERMIKTAQIVSDESRE-DEIGLYNTVDLYFEDDDEVETYKLVTTVRGNSMKGLI 136
Query: 121 SISSPIARALIGKELGD--IISVNAPGG 146
S SP+ A++G +GD + +N G
Sbjct: 137 SSESPLGSAIMGHRVGDRVYVRINEKAG 164
>gi|85057700|ref|YP_456616.1| transcription elongation factor GreA [Aster yellows witches'-broom
phytoplasma AYWB]
gi|84789805|gb|ABC65537.1| transcription elongation factor GreA [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 156
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 89/147 (60%), Gaps = 3/147 (2%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +KI +T G +K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L
Sbjct: 1 MNNKIYELTQTGIEKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD +
Sbjct: 61 EHRISEIQNILKNVRVVKVS--KEREVSIGKKVSLELLHTKQQQEIELVSTLEADPFTNK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146
+SI SP+ + + G ++GDI+ V + G
Sbjct: 119 ISIESPLGQNIKGHQIGDIVFVTSETG 145
>gi|184154324|ref|YP_001842665.1| transcription elongation factor GreA [Lactobacillus reuteri JCM
1112]
gi|183225668|dbj|BAG26185.1| transcription elongation factor GreA [Lactobacillus reuteri JCM
1112]
Length = 156
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 90/150 (60%), Gaps = 5/150 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T+ G+ +I++++ + Q++RP I+ + ARA GDLSEN EY AK EL++L E R+
Sbjct: 9 MTANGYHEIEEQI-AKLQQQRPAKIEQLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP
Sbjct: 67 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ +A++ + G ++V AP +I++V
Sbjct: 125 LGQAILHQTAGTTVTVEAPQSSYKVKIVKV 154
>gi|226355589|ref|YP_002785329.1| transcription elongation factor [Deinococcus deserti VCD115]
gi|226317579|gb|ACO45575.1| putative transcription elongation factor [Deinococcus deserti
VCD115]
Length = 156
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK+++ L + R +I + + +A A GDL E+A Y A+ Q+ NE R+A++
Sbjct: 8 MTQRGYDKLKETLDHLKTTRREQISEYMGQAIADGDLRESAAYDEARMQQSENEARIADI 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + A +I + G GA + V+ + G + +++VG E D+ G +S +SPI
Sbjct: 68 EYQLEHALIIAEDSAGG--AGLGARIR-VKDDKGKEHQFELVGTYEVDILKGKISDASPI 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+AL GK G+ ++V P G +EIL V +
Sbjct: 125 GKALAGKHAGETVNVQLPKGTSRFEILAVEY 155
>gi|154484003|ref|ZP_02026451.1| hypothetical protein EUBVEN_01711 [Eubacterium ventriosum ATCC
27560]
gi|149735045|gb|EDM50931.1| hypothetical protein EUBVEN_01711 [Eubacterium ventriosum ATCC
27560]
Length = 166
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 80/149 (53%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R+ ++
Sbjct: 14 LTYAGLQELEAELEDLKVNKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEARIEDI 73
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ EV+ S + +I G + + + + + IVG + + SG +S SP+
Sbjct: 74 EKILKNVEVVAESDIDDTKINVGCHIIIHDFEYDEDLEFSIVGSTQTNSLSGKISNESPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ALIG E+GDI+ V Y++L +
Sbjct: 134 GHALIGHEVGDIVEVEMGDTVSKYKVLDI 162
>gi|50085861|ref|YP_047371.1| transcription elongation factor and transcript cleavage
[Acinetobacter sp. ADP1]
gi|49531837|emb|CAG69549.1| transcription elongation factor and transcript cleavage
[Acinetobacter sp. ADP1]
Length = 157
Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G+ ++Q EL ++ERP I K +S A + GD SENA+Y K + R+ L
Sbjct: 6 LTAEGYQRLQDELNDLVRKERPEITKIVSWAASLGDRSENADYIYNKRKLREIDRRIRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A ++ S + FGA V L E + G+ ++IVGD+E + +S+ SPI
Sbjct: 66 TKLFEVAHKVEYSPEQDGKAYFGAWVEL-ENDEGEIIKFRIVGDEEIYGRKDYISLQSPI 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+A +GK + D I V P G+K + I Q+
Sbjct: 125 AKACLGKSVDDEIQVQTPTGKKIWYICQI 153
>gi|227364132|ref|ZP_03848230.1| transcription elongation factor GreA [Lactobacillus reuteri MM2-3]
gi|325683336|ref|ZP_08162852.1| transcription elongation factor [Lactobacillus reuteri MM4-1A]
gi|227070857|gb|EEI09182.1| transcription elongation factor GreA [Lactobacillus reuteri MM2-3]
gi|324977686|gb|EGC14637.1| transcription elongation factor [Lactobacillus reuteri MM4-1A]
Length = 192
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 90/150 (60%), Gaps = 5/150 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T+ G+ +I++++ + Q++RP I+ + ARA GDLSEN EY AK EL++L E R+
Sbjct: 45 MTANGYHEIEEQI-AKLQQQRPAKIEQLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 102
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP
Sbjct: 103 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 160
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ +A++ + G ++V AP +I++V
Sbjct: 161 LGQAILHQTAGTTVTVEAPQSSYKVKIVKV 190
>gi|257064643|ref|YP_003144315.1| transcription elongation factor GreA [Slackia heliotrinireducens
DSM 20476]
gi|256792296|gb|ACV22966.1| transcription elongation factor GreA [Slackia heliotrinireducens
DSM 20476]
Length = 155
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 86/148 (58%), Gaps = 3/148 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G +K++ EL + + E+R + + I AR +GD+SEN+EY AK Q + E
Sbjct: 1 MANDYVLTPEGKEKLEAELLYLENEKRAEVGERIKIAREFGDISENSEYDDAKNEQGMLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A++ +I+ A V++ S +R+ G+TV++ G ++ + IVG EA+ G +
Sbjct: 61 VRIAQINDILANATVVEAPKRS-NRVTVGSTVTV--DMGGRERVFTIVGGAEANAAEGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK 148
S SP+ L+G + GD ++ P G K
Sbjct: 118 SNDSPVGSVLLGSKKGDQLTTEGPTGRK 145
>gi|149184390|ref|ZP_01862708.1| transcription elongation factor [Erythrobacter sp. SD-21]
gi|148831710|gb|EDL50143.1| transcription elongation factor [Erythrobacter sp. SD-21]
Length = 159
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G+ ++ +ERP I++ +S A GD SEN +Y ++ + +
Sbjct: 7 PITPAGYAAMKARYDHLLGKERPEIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRELGH 66
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + A VI S R FGATV+L +++ ++K +VGD E D +G + SS
Sbjct: 67 LARRMKAARVIVPSDQPDKSRAFFGATVTLADEDD-NEKTVTLVGDDEQDASAGRIGWSS 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL G +GD+ +V PGGE+ +EI+ +
Sbjct: 126 PLARALKGAGVGDLRTVRLPGGEREWEIVSI 156
>gi|147669340|ref|YP_001214158.1| transcription elongation factor GreA [Dehalococcoides sp. BAV1]
gi|146270288|gb|ABQ17280.1| transcription elongation factor GreA [Dehalococcoides sp. BAV1]
Length = 266
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+KIP+T+ G+ K++ EL + +R +I+ + A D+ ENA Y AAKE + EG
Sbjct: 111 VEKIPMTASGYKKLEDEL-CILKVKRIAVIEEMRLAALDKDMRENAPYHAAKEQRGQIEG 169
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E+ + AEV + + + ++ G TV L + +G++ Y +V +E + G +S
Sbjct: 170 RIKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRIS 229
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEI 152
SSPI +AL + GD I + P G Y I
Sbjct: 230 ASSPIGKALFNRSKGDNIEIEVPSGTLQYVI 260
>gi|312868578|ref|ZP_07728773.1| transcription elongation factor GreA [Lactobacillus oris
PB013-T2-3]
gi|311095875|gb|EFQ54124.1| transcription elongation factor GreA [Lactobacillus oris
PB013-T2-3]
Length = 168
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T G+ +I+ E+ R Q +RP I + ARA GDLSEN EY AK EL++L E R+
Sbjct: 18 MTKAGYQEIEDEI-ARLQAQRPAKIDQLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 75
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + +E+I + ++ G TV+L + D YQIVG QEAD+ VS SP
Sbjct: 76 LNKQLQYSEII--TPADAKQVDLGTTVTLRFDDDNDVVTYQIVGKQEADLAKQKVSFDSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ RA++ + ++V AP I+++
Sbjct: 134 LGRAIMHQPAATTVTVQAPQSSYQVTIIEI 163
>gi|57234441|ref|YP_181502.1| transcription elongation factor GreA [Dehalococcoides ethenogenes
195]
gi|123759708|sp|Q3Z8E7|GREA_DEHE1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|57224889|gb|AAW39946.1| transcription elongation factor GreA [Dehalococcoides ethenogenes
195]
Length = 156
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 1/150 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+KIP+T+ G+ K++ EL + + R +I+ + A D+ ENA Y AAKE + E
Sbjct: 1 MVEKIPMTASGYKKLEDELSTLKVK-RIDVIEEMRLAAMDKDMRENAPYHAAKEQRGQIE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ E+E+ + A+V + + + ++ G+TV L + +G+ Y +V +E + G +
Sbjct: 60 GRIKEIEHELKYADVSEYTDTNTSKVNMGSTVKLRDPKNGECCTYTLVSPKEIEPLKGKI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTY 150
S SSPI +A+ + G+ I + P G Y
Sbjct: 120 SASSPIGKAVFNRNKGEQIEIEVPSGTLQY 149
>gi|148544990|ref|YP_001272360.1| transcription elongation factor GreA [Lactobacillus reuteri DSM
20016]
gi|148532024|gb|ABQ84023.1| transcription elongation factor GreA [Lactobacillus reuteri DSM
20016]
Length = 165
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 90/150 (60%), Gaps = 5/150 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T+ G+ +I++++ + Q++RP I+ + ARA GDLSEN EY AK EL++L E R+
Sbjct: 18 MTANGYHEIEEQI-AKLQQQRPAKIEQLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 75
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP
Sbjct: 76 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ +A++ + G ++V AP +I++V
Sbjct: 134 LGQAILHQTAGTTVTVEAPQSSYKVKIVKV 163
>gi|18310245|ref|NP_562179.1| transcription elongation factor GreA [Clostridium perfringens str.
13]
gi|110801097|ref|YP_695914.1| transcription elongation factor GreA [Clostridium perfringens ATCC
13124]
gi|110802369|ref|YP_698592.1| transcription elongation factor GreA [Clostridium perfringens
SM101]
gi|168205506|ref|ZP_02631511.1| transcription elongation factor GreA [Clostridium perfringens E
str. JGS1987]
gi|168213038|ref|ZP_02638663.1| transcription elongation factor GreA [Clostridium perfringens CPE
str. F4969]
gi|168217085|ref|ZP_02642710.1| transcription elongation factor GreA [Clostridium perfringens NCTC
8239]
gi|169344009|ref|ZP_02865000.1| transcription elongation factor GreA [Clostridium perfringens C
str. JGS1495]
gi|182624203|ref|ZP_02951989.1| transcription elongation factor GreA [Clostridium perfringens D
str. JGS1721]
gi|18144924|dbj|BAB80969.1| transcription elongation factor [Clostridium perfringens str. 13]
gi|110675744|gb|ABG84731.1| transcription elongation factor GreA [Clostridium perfringens ATCC
13124]
gi|110682870|gb|ABG86240.1| transcription elongation factor GreA [Clostridium perfringens
SM101]
gi|169297917|gb|EDS80012.1| transcription elongation factor GreA [Clostridium perfringens C
str. JGS1495]
gi|170663031|gb|EDT15714.1| transcription elongation factor GreA [Clostridium perfringens E
str. JGS1987]
gi|170715452|gb|EDT27634.1| transcription elongation factor GreA [Clostridium perfringens CPE
str. F4969]
gi|177910617|gb|EDT72985.1| transcription elongation factor GreA [Clostridium perfringens D
str. JGS1721]
gi|182380772|gb|EDT78251.1| transcription elongation factor GreA [Clostridium perfringens NCTC
8239]
Length = 154
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 88/154 (57%), Gaps = 8/154 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+++EL +R R +I K EA A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENVRKLREELDYRMSVVRAKIAKEKLEAAAHGDRSENAEYKEACRNYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+I+ A ++D S D+ G A + VE + D+ +V + D+++ +SI
Sbjct: 65 LTMISTAIIVD--EESNDKSTLGLNSKARIKFVEDD--DEDVVTLVTTMDLDLENMCISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL+GK++GD++ V APGG T E+L++L
Sbjct: 121 ESDLGKALMGKKVGDVVEVEAPGGNYTVEVLEIL 154
>gi|241663543|ref|YP_002981903.1| transcription elongation factor GreB [Ralstonia pickettii 12D]
gi|240865570|gb|ACS63231.1| transcription elongation factor GreB [Ralstonia pickettii 12D]
Length = 187
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+++++ EL ERP ++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 32 ITPAGYERLRSELMHLIDTERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I +AEV+D S D+I FGATV+ + G++ IVG E D+ G VS SP
Sbjct: 92 TRRIEKAEVVDASLQGDNDQIFFGATVTYANQR-GEETTITIVGTDEVDLDIGHVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARALI GD + + P G + +IL+V +
Sbjct: 151 IARALIKAREGDTVPLRTPTGVEQIDILEVKY 182
>gi|148378676|ref|YP_001253217.1| transcription elongation factor GreA [Clostridium botulinum A str.
ATCC 3502]
gi|153933080|ref|YP_001383060.1| transcription elongation factor GreA [Clostridium botulinum A str.
ATCC 19397]
gi|153936284|ref|YP_001386609.1| transcription elongation factor GreA [Clostridium botulinum A str.
Hall]
gi|187777798|ref|ZP_02994271.1| hypothetical protein CLOSPO_01390 [Clostridium sporogenes ATCC
15579]
gi|148288160|emb|CAL82228.1| transcription elongation factor [Clostridium botulinum A str. ATCC
3502]
gi|152929124|gb|ABS34624.1| transcription elongation factor GreA [Clostridium botulinum A str.
ATCC 19397]
gi|152932198|gb|ABS37697.1| transcription elongation factor GreA [Clostridium botulinum A str.
Hall]
gi|187774726|gb|EDU38528.1| hypothetical protein CLOSPO_01390 [Clostridium sporogenes ATCC
15579]
Length = 154
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 85/150 (56%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+I+ A VID + + + + + N +V +AD + L+S+ S +
Sbjct: 65 LTMISTASVIDEKNQNKSVLGVNSKCKIKFIEDEFETNVSLVTTMDADPEKMLISVESDL 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+AL+GK++GD+ V+APG + T E+L+++
Sbjct: 125 GKALMGKKVGDVAEVDAPGEKYTVEVLEII 154
>gi|116623798|ref|YP_825954.1| transcription elongation factor GreB [Candidatus Solibacter
usitatus Ellin6076]
gi|116226960|gb|ABJ85669.1| transcription elongation factor GreB [Candidatus Solibacter
usitatus Ellin6076]
Length = 227
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 5/155 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++++E R+ ERP + K ++ A + GD SENA+YQ K +GR+ L
Sbjct: 47 ITPDGLQRLKEEHRFLLTRERPAVTKVVAWAASNGDRSENADYQYGKRRLRQIDGRIRFL 106
Query: 67 ENIITRAEVIDI----STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
I AEV+D + + R FGATV +G ++ IVG E D+ +S
Sbjct: 107 TKRIDAAEVVDPERPRAGQAATRAFFGATVHYANA-AGTERVVSIVGTDEVDLNRNHISW 165
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ RAL+ GD + + APGG + +L+V +
Sbjct: 166 VSPLGRALMKSAAGDRVVLQAPGGTEHLVVLKVCY 200
>gi|293606024|ref|ZP_06688389.1| transcription elongation factor GreB [Achromobacter piechaudii ATCC
43553]
gi|292815479|gb|EFF74595.1| transcription elongation factor GreB [Achromobacter piechaudii ATCC
43553]
Length = 183
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+++++ EL ERP +++ +S A + GD SEN +Y K+ + RM L
Sbjct: 32 MTPEGYERLRAELTHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFL 91
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D + D++ FGATV +K +G++ IVG EA+ +G +S SP
Sbjct: 92 TKRLDIAEVVDPALQPNRDQVFFGATVRYSDK-AGEEHTVTIVGVDEAEPLAGKISWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALI GD + + PGG + +IL+V +
Sbjct: 151 VARALIKAREGDTVVLRTPGGIEELDILEVRY 182
>gi|85710775|ref|ZP_01041836.1| GreB [Idiomarina baltica OS145]
gi|85695179|gb|EAQ33116.1| GreB [Idiomarina baltica OS145]
Length = 169
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 82/146 (56%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GFD +Q+EL + ER ++ +S A + GD SENA+Y+ K+ + R+ L
Sbjct: 6 ITRRGFDMLQRELNQLWRVERRETVEKVSWAASLGDRSENADYKYNKQKLRRIDSRIRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+D S ++ FGA V +E G + +QIVG E +VSI +P+
Sbjct: 66 TKRLDQLKVVDYSPQQDGQVFFGAFVE-IEDEQGTIRRFQIVGPDEIYDSKDVVSIDAPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ K + D ++V P GE+ + I
Sbjct: 125 ARALLKKHVDDEVTVVTPKGEQCWFI 150
>gi|160946713|ref|ZP_02093916.1| hypothetical protein PEPMIC_00671 [Parvimonas micra ATCC 33270]
gi|158447097|gb|EDP24092.1| hypothetical protein PEPMIC_00671 [Parvimonas micra ATCC 33270]
Length = 160
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 72/121 (59%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
+R I + I AR +GDLSEN+EY AK Q E ++ +L+N+I A++ID +
Sbjct: 27 KRKEIAEKIKIARDFGDLSENSEYDEAKNEQAQIEEKIVKLDNMIANAKIIDEVELDTKT 86
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ GATV+LV+ S K Y IVG E++ G +S SP+ +A++GK+ G+ + V P
Sbjct: 87 VNVGATVTLVQVESKKKLEYTIVGSAESNPLEGKISNESPVGKAILGKKKGNKVQVQLPN 146
Query: 146 G 146
G
Sbjct: 147 G 147
>gi|294625096|ref|ZP_06703742.1| transcription elongation factor GreB [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664556|ref|ZP_06729899.1| transcription elongation factor GreB [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292600605|gb|EFF44696.1| transcription elongation factor GreB [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605664|gb|EFF48972.1| transcription elongation factor GreB [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 168
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+
Sbjct: 15 ITPEGHARLKAELDDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S
Sbjct: 73 YLSKRLEALRVVDTAPTDANAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ K + D + P G+ T+ ++ V
Sbjct: 133 PLARALLKKRVDDEFDAHLPAGKHTFVVVSV 163
>gi|296282663|ref|ZP_06860661.1| transcription elongation factor GreB [Citromicrobium bathyomarinum
JL354]
Length = 165
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G+ ++ RP I++ +S A GD SEN +Y ++ + +A
Sbjct: 6 PITPAGYSAMKARYDHLLGTARPEIVETVSWAAGNGDRSENGDYLYGRKKMREIDRELAH 65
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + A VID + DR+ FGATV+LV+++ +K +VG+ EA+ G + S
Sbjct: 66 LARRMKSARVIDPADQPNRDRVFFGATVTLVDEDD-REKVLTLVGNDEAEASEGRIGWGS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL G E+GD+ V P G + +E+L++
Sbjct: 125 PMARALRGAEVGDLRMVKGPTGLREWEVLKI 155
>gi|255281437|ref|ZP_05345992.1| transcription elongation factor GreA [Bryantella formatexigens DSM
14469]
gi|255267925|gb|EET61130.1| transcription elongation factor GreA [Bryantella formatexigens DSM
14469]
Length = 159
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/147 (37%), Positives = 79/147 (53%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ E+ + R + I EAR GDLSENAEY AAK+ Q E R+ E+
Sbjct: 8 LTYSGLKALEDEMHDLKVVRRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEARIEEI 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I+ AEV+ + ++I G TV L ++ ++ YQIVG EA+ G +S SP+
Sbjct: 68 EKILKNAEVVVEDDVDLNKINVGCTVKLFDEEYEEEIEYQIVGSTEANSLMGKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153
+ALIG +G I V G Y +L
Sbjct: 128 GKALIGASIGQEIEVETQVGVCKYRVL 154
>gi|152002554|dbj|BAF73578.1| transcription elongation factor [Onion yellows phytoplasma OY-W]
Length = 170
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 88/147 (59%), Gaps = 3/147 (2%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +KI +T G +K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L
Sbjct: 15 MNNKIYELTQSGIEKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 74
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD +
Sbjct: 75 EHRISEIQNILKNVRVVKVS--KEREVSIGKKVSLELLHTKQQQEIELVSTLEADPFTNK 132
Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146
+SI SP+ + + G ++GD++ V G
Sbjct: 133 ISIESPLGKNIKGHQIGDVVFVTGETG 159
>gi|306821055|ref|ZP_07454673.1| transcription elongation factor GreA [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304550891|gb|EFM38864.1| transcription elongation factor GreA [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 165
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 83/145 (57%), Gaps = 3/145 (2%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T +G++ I++EL + R + + EAR++GDLSENAEY AK Q E R+A
Sbjct: 9 ILLTKEGYENIEKELDELKSVRRKEVSDKLKEARSFGDLSENAEYDEAKNEQAQLEERIA 68
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG---DKKNYQIVGDQEADVQSGLVS 121
+LEN++ +A +I + + + + G V + K ++++Y IVG E++ G +S
Sbjct: 69 KLENMLRKAVIISETDLKMNIVNLGTQVKVSIKYPDGEVEEEDYTIVGSAESNPAEGKIS 128
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
SPI +ALIG + G I V P G
Sbjct: 129 NDSPIGKALIGAKKGQKIDVQVPDG 153
>gi|300855815|ref|YP_003780799.1| putative transcription elongation factor [Clostridium ljungdahlii
DSM 13528]
gi|300435930|gb|ADK15697.1| predicted transcription elongation factor [Clostridium ljungdahlii
DSM 13528]
Length = 154
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 86/150 (57%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + DK+++EL +R +R I K A A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTQENIDKLREELDYRMTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++I+ A VID+ + I + + D++ +V +AD ++ L+SI S +
Sbjct: 65 LSMISTATVIDVKSADKSVIGVNSKFKIKFVEDEDEEIVSLVTTIDADPENMLISIESDL 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+AL+GK++GD + V+AP + T EIL++L
Sbjct: 125 GKALVGKKVGDTVEVDAPSEKYTVEILEML 154
>gi|168209613|ref|ZP_02635238.1| transcription elongation factor GreA [Clostridium perfringens B
str. ATCC 3626]
gi|170712210|gb|EDT24392.1| transcription elongation factor GreA [Clostridium perfringens B
str. ATCC 3626]
Length = 154
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 87/154 (56%), Gaps = 8/154 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+++EL +R R +I K EA A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENVRKLREELDYRMSVVRAKIAKEKLEAAAHGDRSENAEYKEACRNYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+I+ A ++D S D+ G A + VE + D+ +V + D+++ +SI
Sbjct: 65 LTMISTAIIVD--EESNDKSTLGLNSKARIKFVEDD--DEDVVTLVTTMDLDLENMCISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL+GK +GD++ V APGG T E+L++L
Sbjct: 121 ESDLGKALMGKNVGDVVEVEAPGGNYTVEVLEIL 154
>gi|323143848|ref|ZP_08078514.1| transcription elongation factor GreB [Succinatimonas hippei YIT
12066]
gi|322416366|gb|EFY07034.1| transcription elongation factor GreB [Succinatimonas hippei YIT
12066]
Length = 207
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 83/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D + QEL + E+RP + + +S A + GD SENA+YQ K L + R+ L
Sbjct: 9 ITREGYDLLHQELDYLWLEKRPDVTQKVSWAASLGDRSENADYQYNKRLLAQIDRRIRYL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V++ + ++ FGA V + + +IVG E ++ +S+ SP+
Sbjct: 69 RGCMNNLQVVEYNHQQDGKVFFGAYVEIEADDDESLMQVRIVGGDEIFGRTNYISVDSPM 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+AL+GK GD SV+ P G + + I ++ +
Sbjct: 129 AKALLGKAEGDDASVHTPKGARIWYINRIAY 159
>gi|239997048|ref|ZP_04717572.1| transcription elongation factor GreB [Alteromonas macleodii ATCC
27126]
Length = 161
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T KG+ K++QEL + +EERP I + ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITRKGYLKLKQELDFLWREERPEITRKVTWAASLGDRSENADYQYNKKKLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +V+D + ++ FGA V +E +G ++VG E + +SI
Sbjct: 62 VRYLRKCLENLKVVDYDSQQEGKVFFGAWVE-IENEAGKVMELRLVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+GKE D V G K + I
Sbjct: 121 DSPMARALLGKEEDDEFVVKTETGTKEWWI 150
>gi|58582894|ref|YP_201910.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58427488|gb|AAW76525.1| transcription elongation factor and transcript cleavage
[Xanthomonas oryzae pv. oryzae KACC10331]
Length = 188
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+
Sbjct: 35 ITPEGHARLKAELDDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 92
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S
Sbjct: 93 YLSKRLEALRVVDTAPTDPNAVFFGAQVDLEDADSGELLRYRIVGPDETDAGRGWISIDS 152
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ K + D + P G+ T+ ++ V
Sbjct: 153 PLARALLKKRVDDEFDAHLPAGKHTFVVVSV 183
>gi|304310877|ref|YP_003810475.1| Transcription elongation factor [gamma proteobacterium HdN1]
gi|301796610|emb|CBL44822.1| Transcription elongation factor [gamma proteobacterium HdN1]
Length = 158
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ ++QQEL +ERP++ K + A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITPEGYTELQQELDELWYKERPKVTKLVQWAASLGDRSENADYQYNKKRLREIDRRVRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + V++ +++ ++ FGA V LV+ + + +++IVG E + VS+++PI
Sbjct: 66 RGRLGKLRVVEYNSVQEGKVYFGAWVGLVDVDD-QRLSFRIVGPDEIYGKKNYVSVNAPI 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
RA +GK GD I+V P K +EI
Sbjct: 125 VRACLGKSEGDEITVRTPEATKEWEI 150
>gi|229829708|ref|ZP_04455777.1| hypothetical protein GCWU000342_01805 [Shuttleworthia satelles DSM
14600]
gi|229791697|gb|EEP27811.1| hypothetical protein GCWU000342_01805 [Shuttleworthia satelles DSM
14600]
Length = 160
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL + +R + I+EAR GDLSENAEY+AAKE Q E R+ E+
Sbjct: 9 MTYEGLQKLEAELEDLKTNKRKANSRDIAEAREQGDLSENAEYEAAKEEQRQIENRINEI 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I+ AE+ D + + G+TV+L++ ++ Y+IVG E + G +S SP+
Sbjct: 69 TKILKNAEIAD-DIVDKSIVNIGSTVTLLDLEYDEELTYKIVGSTEVNSLGGKISNESPV 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A++ + G+ ++V G Y+IL +
Sbjct: 128 GAAILHHKAGETVTVETEAGSFKYKILSI 156
>gi|289663189|ref|ZP_06484770.1| transcription elongation factor GreB [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289669412|ref|ZP_06490487.1| transcription elongation factor GreB [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 167
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+
Sbjct: 15 ITPEGHARLKAELEDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S
Sbjct: 73 YLSKRLEALRVVDTAPTDPNAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL+ K + D P G+ T+ ++ V +
Sbjct: 133 PLARALLKKRVDDEFDAQLPAGKHTFVVMSVHY 165
>gi|255526929|ref|ZP_05393824.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
gi|296184898|ref|ZP_06853309.1| putative transcription elongation factor GreA [Clostridium
carboxidivorans P7]
gi|255509377|gb|EET85722.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
gi|296050680|gb|EFG90103.1| putative transcription elongation factor GreA [Clostridium
carboxidivorans P7]
Length = 155
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/154 (36%), Positives = 90/154 (58%), Gaps = 5/154 (3%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T G K+++EL + + +R I A+ ARA GDLSENA+Y AAK+ Q++ E R+
Sbjct: 4 IMLTEVGKKKLEEELEYLKTVKRAEIKAALKYARAQGDLSENADYDAAKDDQSMTETRIM 63
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEK--NSGDKKNYQIVGDQEADVQSGLVSI 122
ELE + A +I+ S D + FG + + K + D + +V E+DV++ +SI
Sbjct: 64 ELEQQLKNAVIIEDS--DEDHV-FGINKTALVKFYDIDDTEEVTLVSSVESDVKNMKISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ AL E+G ++V +P GE E+L++L
Sbjct: 121 ESPLGAALYKIEVGKKVAVESPDGEYEVEVLKIL 154
>gi|154249834|ref|YP_001410659.1| transcription elongation factor GreA [Fervidobacterium nodosum
Rt17-B1]
gi|154153770|gb|ABS61002.1| transcription elongation factor GreA [Fervidobacterium nodosum
Rt17-B1]
Length = 156
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+ +T +G++ +++EL +++ I + I AR GDLSEN+EYQ AK Q
Sbjct: 1 MEKVKLTKEGYELLKKELDELKRQLMFEIPERIKAARELGDLSENSEYQEAKNEQGRIAS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE ++ AE+I ++ S + G V L ++G++ Q+V QEAD+ + +S
Sbjct: 61 RINELEQMLMNAEIITEASNSST-VNLGDWVILKNLDTGEEMKIQLVNPQEADIFANKIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
I SP+ R + G + G + + AP G Y+++++
Sbjct: 120 IESPLGRGVNGAKKGQTVKIKAPKGIVKYQVIEI 153
>gi|251787893|ref|YP_003002614.1| transcription elongation factor GreB [Dickeya zeae Ech1591]
gi|247536514|gb|ACT05135.1| transcription elongation factor GreB [Dickeya zeae Ech1591]
Length = 160
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D S ++ FGA V VE GD K ++IVG E + +SI +P+
Sbjct: 66 RKRLQVVRVVDYSPQQDGKVFFGAWVE-VENEDGDIKCFRIVGPDEIYGRKDYISIDAPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+ K + + V+ P G K + + ++
Sbjct: 125 ARALLKKAVDEEAVVSTPAGPKVWYVNKI 153
>gi|289432606|ref|YP_003462479.1| GreA/GreB family elongation factor [Dehalococcoides sp. GT]
gi|288946326|gb|ADC74023.1| GreA/GreB family elongation factor [Dehalococcoides sp. GT]
Length = 266
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+KIP+T+ G+ K++ EL + + R +I+ + A D+ ENA Y AAKE + EG
Sbjct: 111 VEKIPMTASGYKKLEDELGILKVK-RIAVIEEMRLAALDKDMRENAPYHAAKEQRGQIEG 169
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E+ + AEV + + + ++ G TV L + +G++ Y +V +E + G +S
Sbjct: 170 RIKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRIS 229
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEI 152
SSPI +AL + GD I + P G Y I
Sbjct: 230 ASSPIGKALFNRSKGDNIEIEVPSGTLQYVI 260
>gi|166712646|ref|ZP_02243853.1| transcription elongation factor GreB [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 200
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+
Sbjct: 45 ITPEGHARLKAELDDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 102
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S
Sbjct: 103 YLSKRLEALRVVDTAPTEPNAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDS 162
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL+ K + D + P G+ T+ ++ V +
Sbjct: 163 PLARALLKKRVDDEFDAHLPAGKHTFVVVSVHY 195
>gi|332143379|ref|YP_004429117.1| transcription elongation factor GreB [Alteromonas macleodii str.
'Deep ecotype']
gi|327553401|gb|AEB00120.1| transcription elongation factor GreB [Alteromonas macleodii str.
'Deep ecotype']
Length = 161
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P +T KG+ K++QEL + +EERP I + ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLITRKGYLKLKQELDFLWREERPEITRKVTWAASLGDRSENADYQYNKKKLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +V+D ++ FGA V +E +G ++VG E + +SI
Sbjct: 62 VRYLRKCLENLKVVDYDPQQEGKVFFGAWVE-IENEAGKVMELRLVGYDEIFGRRDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ARALIGKE D V G K + I ++
Sbjct: 121 DSPMARALIGKEEDDEFVVKTETGTKEWWINRI 153
>gi|319787549|ref|YP_004147024.1| transcription elongation factor GreB [Pseudoxanthomonas suwonensis
11-1]
gi|317466061|gb|ADV27793.1| transcription elongation factor GreB [Pseudoxanthomonas suwonensis
11-1]
Length = 166
Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T G D+++ EL WR Q RP ++KA++ A A GD SENAEY K+ + R+
Sbjct: 15 ITRAGHDRLKAELDDLWRVQ--RPEVVKALAAAAAEGDRSENAEYTYRKKQLAGIDRRVR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V++ + + + FGA V L ++G+ Y+IVG E D G +SI S
Sbjct: 73 YLSKRLPALRVVETAPSDPEAVFFGAWVELERIDTGELARYRIVGPDETDAALGHISIDS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ K + D + V PGG + ++ V
Sbjct: 133 PLARALLRKRIDDEVEVQLPGGPARFVVVDV 163
>gi|84624754|ref|YP_452126.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188577733|ref|YP_001914662.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|84368694|dbj|BAE69852.1| Transcription elongation factor greB [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188522185|gb|ACD60130.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 168
Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+
Sbjct: 15 ITPEGHARLKAELDDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S
Sbjct: 73 YLSKRLEALRVVDTAPTDPNAVFFGAQVDLEDADSGELLRYRIVGPDETDAGRGWISIDS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ K + D + P G+ T+ ++ V
Sbjct: 133 PLARALLKKRVDDEFDAHLPAGKHTFVVVSV 163
>gi|90407158|ref|ZP_01215346.1| transcription elongation factor [Psychromonas sp. CNPT3]
gi|90311734|gb|EAS39831.1| transcription elongation factor [Psychromonas sp. CNPT3]
Length = 163
Score = 83.6 bits (205), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF +Q EL +E RP I + ++ A + GD S+NA+Y+ K + + R+ L
Sbjct: 6 ITPEGFKTLQTELEHLWREYRPEITRKVTWAASLGDRSDNADYKENKRILRQIDSRIRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE------ADVQSGLV 120
+ + +I S +++ FGA +S +E + G+ KN++IVG E + +
Sbjct: 66 TKRLQQVSIISPSKQQANKVFFGAKLS-IENDEGEIKNFKIVGPDEIYQRGTLQTRKDYI 124
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SI SP+ARAL+ E+ D V P G +T+ IL +
Sbjct: 125 SIDSPMARALLKLEVDDEAQVKTPTGIQTWYILTI 159
>gi|294788550|ref|ZP_06753792.1| transcription elongation factor GreB [Simonsiella muelleri ATCC
29453]
gi|294483427|gb|EFG31112.1| transcription elongation factor GreB [Simonsiella muelleri ATCC
29453]
Length = 162
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G +QQEL +ERP I++ ++ A + GD SEN +Y K + R+
Sbjct: 5 KYYMTPQGHQTLQQELYQLVHKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 64
Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A VID T D+I F ATV+ +E+++G ++ +IVG+ E D +S
Sbjct: 65 RFLTKRLENALVIDPETREFTDQIFFSATVT-IERSNGVEQTVKIVGEDEIDATKNKISW 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARALI GD + +N P G + +IL V +I
Sbjct: 124 KSPLARALIKAREGDRVWLNVPNGREAIDILVVEYI 159
>gi|325663588|ref|ZP_08151995.1| hypothetical protein HMPREF0490_02736 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470274|gb|EGC73506.1| hypothetical protein HMPREF0490_02736 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 167
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K+++E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTKNDIKKMREEIEYRKIVLRKELLEDVKEARAHGDLSENFEYHAAKKEKNKNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A+++ + D + TV L + + + +++V + GL+S SPI
Sbjct: 65 ERMIKTAKIVSDESKE-DEVGLNNTVHLYFEEDDEVEVFKLVTTVRGNSLKGLISTESPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+A++GK+ GD + + G Y +++
Sbjct: 124 GKAILGKKAGDRVFIRVSGDAGYYVVVK 151
>gi|167769661|ref|ZP_02441714.1| hypothetical protein ANACOL_00995 [Anaerotruncus colihominis DSM
17241]
gi|167668022|gb|EDS12152.1| hypothetical protein ANACOL_00995 [Anaerotruncus colihominis DSM
17241]
Length = 151
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 86/149 (57%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D +++EL + R I + I AR +GDLSEN+EY AK Q + E R+ +L
Sbjct: 1 MTQEGYDALKKELNELKSVTRGEISEKIRVARGFGDLSENSEYDEAKNEQAVVEARIKKL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ + ++I+ +S D ++ G+ V +++ + ++ Y I E+ +S SP+
Sbjct: 61 EDQLKHVKIIERDQISTDVVSVGSRVKILDMDYDEEMVYTIASSVESHNDLESISDESPV 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ LIG ++GD++ ++AP +IL++
Sbjct: 121 GKGLIGHKVGDVVEIHAPAAVLKLKILEI 149
>gi|308189955|ref|YP_003922886.1| transcription elongation factor [Mycoplasma fermentans JER]
gi|319777236|ref|YP_004136887.1| transcription elongation factor [Mycoplasma fermentans M64]
gi|238809906|dbj|BAH69696.1| hypothetical protein [Mycoplasma fermentans PG18]
gi|307624697|gb|ADN69002.1| transcription elongation factor [Mycoplasma fermentans JER]
gi|318038311|gb|ADV34510.1| Transcription elongation factor [Mycoplasma fermentans M64]
Length = 163
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 51/144 (35%), Positives = 82/144 (56%), Gaps = 2/144 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI + + +K Q E + ERP I A+ EARA GDLSENAEY AA++ Q + E R
Sbjct: 7 EKIILAKETLEKYQAEYEHLIKVERPEIQAALKEARAQGDLSENAEYDAARDRQGIVEAR 66
Query: 63 MAELENIITRAEVIDISTMSGDRI--AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ ELE I+ AEVI+ + ++ GATV + + + +I+G +++ G +
Sbjct: 67 IVELEGILANAEVIETNQNKKGKLKAGIGATVKYLNLKTNKEITVKIMGIHDSNPMEGNI 126
Query: 121 SISSPIARALIGKELGDIISVNAP 144
S SP+A+A++ + G + V+ P
Sbjct: 127 SNESPVAQAIMEGDEGATVEVDVP 150
>gi|168178054|ref|ZP_02612718.1| transcription elongation factor GreA [Clostridium botulinum NCTC
2916]
gi|170755319|ref|YP_001780312.1| transcription elongation factor GreA [Clostridium botulinum B1 str.
Okra]
gi|169120531|gb|ACA44367.1| transcription elongation factor GreA [Clostridium botulinum B1 str.
Okra]
gi|182671032|gb|EDT83006.1| transcription elongation factor GreA [Clostridium botulinum NCTC
2916]
Length = 154
Score = 83.6 bits (205), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 90/154 (58%), Gaps = 8/154 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+I+ A VID + D+ G A + VE + N +V +A+ ++ L+S+
Sbjct: 65 LTMISTASVID--EKNQDKSVLGVNSKAKIKFVEDEF--ETNVSLVTTMDAEPENMLISV 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL+GK++GD+ V+APG + T E+L+++
Sbjct: 121 ESDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154
>gi|329894420|ref|ZP_08270267.1| Transcription elongation factor GreB [gamma proteobacterium
IMCC3088]
gi|328923067|gb|EGG30391.1| Transcription elongation factor GreB [gamma proteobacterium
IMCC3088]
Length = 171
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G ++ EL + ERP++ A+ EA GD SEN +Y K+ + R+ L
Sbjct: 15 ITAAGAAALKSELDELWRVERPKVTDAVREAAKNGDRSENGDYIYGKKRLREIDSRVRYL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ + DRI FGA+V+L E+ G + IVG E D ++G +SI +PI
Sbjct: 75 TKRLESLKVVSAAPSEPDRIFFGASVTL-EEEDGSLQTLHIVGADEIDPKTGKISIDAPI 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+RAL+GK + D I AP G + ++ V +
Sbjct: 134 SRALLGKRIDDEIEYQAPAGRQVRYVIDVNY 164
>gi|73748580|ref|YP_307819.1| transcription elongation factor GreA [Dehalococcoides sp. CBDB1]
gi|73660296|emb|CAI82903.1| transcription elongation factor GreA [Dehalococcoides sp. CBDB1]
Length = 170
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+KIP+T+ G+ K++ EL + + R +I+ + A D+ ENA Y AAKE + EG
Sbjct: 15 VEKIPMTASGYKKLEDELGILKVK-RIAVIEEMRLAALDKDMRENAPYHAAKEQRGQIEG 73
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E+ + AEV + + + ++ G TV L + +G++ Y +V +E + G +S
Sbjct: 74 RIKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRIS 133
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEI 152
SSPI +AL + GD I + P G Y I
Sbjct: 134 ASSPIGKALFNRSKGDNIEIEVPSGTLQYVI 164
>gi|332284095|ref|YP_004416006.1| transcription elongation factor GreB [Pusillimonas sp. T7-7]
gi|330428048|gb|AEC19382.1| transcription elongation factor GreB [Pusillimonas sp. T7-7]
Length = 193
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G+ +++ EL EERP +++ +S A + GD SEN +Y K+ + RM L
Sbjct: 40 ITTAGYQRLRAELAHLMNEERPEVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFL 99
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV++ +T D++ FGATV +K +G+ IVG EA+ G +S SP
Sbjct: 100 TKRLEVAEVVNPATQPNKDQVFFGATVEYSDK-AGETFRVTIVGVDEAEPLQGRISWISP 158
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ GD +++ P G +IL+V +
Sbjct: 159 VARALLKAREGDTVTLRTPAGVDELDILEVSY 190
>gi|21243461|ref|NP_643043.1| transcription elongation factor GreB [Xanthomonas axonopodis pv.
citri str. 306]
gi|25452986|sp|Q8PJ11|GREB_XANAC RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|21109017|gb|AAM37579.1| transcription elongation factor and transcript cleavage
[Xanthomonas axonopodis pv. citri str. 306]
Length = 168
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+
Sbjct: 15 ITPEGHARLKAELDDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+D + + + FGA V L + SG+ Y+IVG E D G +SI S
Sbjct: 73 YLSKRLEALRVVDTAPTDANAVFFGAQVELEDAGSGELLRYRIVGPDETDAGRGWISIDS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ K + D + P G+ T+ ++ V
Sbjct: 133 PLARALLKKRVDDEFDAHLPAGKHTFVVVSV 163
>gi|88798240|ref|ZP_01113826.1| transcription elongation factor GreB [Reinekea sp. MED297]
gi|88779016|gb|EAR10205.1| transcription elongation factor GreB [Reinekea sp. MED297]
Length = 170
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL + ERPR+ + +S+A GD SENAEY K+ + R+ L
Sbjct: 15 ITPEGEARMRAELHELWKVERPRVTQEVSDAAKQGDRSENAEYIYGKKRLRQIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ R+ FGA V +V+++ + ++IVG E DV +S+ SP+
Sbjct: 75 TKRLEKLQVVHARPDDQSRVFFGAWVRVVDEDES-PRVFRIVGTDEFDVDPRYISVDSPM 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K++ D + V P GE Y + Q+ +
Sbjct: 134 ARALLKKQVDDEVIVRLPDGEAVYYVDQISY 164
>gi|103487218|ref|YP_616779.1| transcription elongation factor GreB [Sphingopyxis alaskensis
RB2256]
gi|98977295|gb|ABF53446.1| transcription elongation factor GreB [Sphingopyxis alaskensis
RB2256]
Length = 160
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
++ GF ++ E +ERP++++ IS A GD SEN +Y K L+ ++ R+
Sbjct: 9 ISPAGFAALRAEYDALLGDERPKLVEVISWAAGNGDRSENGDYIYGRKRLREIDR-RLGF 67
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + A V+D + RI FGATV L + + ++ +VGD EA+ SG + +S
Sbjct: 68 LARRMKAARVVDPAQQPDKSRIWFGATVELADDDDA-RRTVTLVGDDEAEAGSGRIGWNS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL G +GD+ +V P G K +E++ +
Sbjct: 127 PLARALRGAAVGDLRTVQLPAGPKLWEVIAI 157
>gi|134095318|ref|YP_001100393.1| transcription elongation factor and transcript cleavage
[Herminiimonas arsenicoxydans]
gi|133739221|emb|CAL62270.1| Transcription elongation factor GreB (Transcript cleavage factor
GreB) [Herminiimonas arsenicoxydans]
Length = 182
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 5 IPVTSKGFDKIQQELRWRQQ------EERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
IPV +K + Q LR + + ERP +++ +S A + GD SEN +Y K
Sbjct: 19 IPVGAKNYMTPQGHLRMKNELLNLIDVERPEVVQIVSWAASNGDRSENGDYIYGKRRLRQ 78
Query: 59 NEGRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
+GR+ L + AEV+D + G D+I FGATV E +GD+ I+G E D
Sbjct: 79 IDGRIRFLTKRLDLAEVVDPTVHYGSDQIFFGATVRY-ETQAGDEHTVTILGIDELDPLH 137
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
G +S SP+ARAL GD +++ PGG + IL+V +
Sbjct: 138 GKISWISPVARALTKAREGDSVTLKTPGGLEELLILEVTY 177
>gi|294668892|ref|ZP_06733982.1| transcription elongation factor GreB [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309189|gb|EFE50432.1| transcription elongation factor GreB [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 162
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L
Sbjct: 8 ITPAGWRSLKDELYRLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 67
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+D T + D+I FGATV+L+ N G ++ +IVG E D +S SP
Sbjct: 68 TKRLEAAQVVDPETREATDQIFFGATVTLLRGN-GSEQTVKIVGIDEIDTAQNKISWISP 126
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD +S+N P G + EIL+V ++
Sbjct: 127 LARCLIKAREGDEVSLNTPEGREDIEILEVAYV 159
>gi|319935513|ref|ZP_08009948.1| transcription elongation factor [Coprobacillus sp. 29_1]
gi|319809544|gb|EFW05961.1| transcription elongation factor [Coprobacillus sp. 29_1]
Length = 161
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 96/160 (60%), Gaps = 7/160 (4%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + +T G +K+++E ERP++I+ + AR+ GDLSENA+Y +A++ Q E R
Sbjct: 4 DAVLLTQSGVEKLKKEREQLINIERPKVIEELQLARSQGDLSENADYDSARDKQAHIESR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVE--KNSGDKKNYQIVGDQEADVQSGLV 120
+ E++ ++ ++ID S M GATV++++ + + +++ IVG E D +G +
Sbjct: 64 IKEIDQMLLHVQIIDESQMDSAVAKPGATVTILDLSEEGAEPESFTIVGTFETDPLNGKI 123
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYE--ILQVLWI 158
S SP+A+A++ + +I+SV G + YE IL++ +I
Sbjct: 124 SNESPLAKAILEHGVNEIVSV---GVAEPYEVKILKIEYI 160
>gi|295110686|emb|CBL24639.1| Transcription elongation factor [Ruminococcus obeum A2-162]
Length = 166
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/139 (37%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +KI++E+ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+
Sbjct: 4 KLTKRDVEKIEEEIEHRKLVIRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRIRY 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE ++ A V+D S+ S D + V + + G+ + Y++V + VSI SP
Sbjct: 64 LERMLKTATVVDDSSKS-DEVGMDDIVEVEFEEDGEVEKYKLVTSIRGNSMENRVSIESP 122
Query: 126 IARALIGKELGD--IISVN 142
I +AL G +GD ++ VN
Sbjct: 123 IGKALKGHRVGDRVLVKVN 141
>gi|170759281|ref|YP_001786034.1| transcription elongation factor GreA [Clostridium botulinum A3 str.
Loch Maree]
gi|169406270|gb|ACA54681.1| transcription elongation factor GreA [Clostridium botulinum A3 str.
Loch Maree]
Length = 154
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+I+ A VID + D+ G A + VE + N +V +A+ + L+S+
Sbjct: 65 LTMISTASVID--ERNQDKSVLGVNSKAKIKFVEDEF--ETNVSLVTTMDAEPEKMLISV 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL+GK++GD+ V+APG + T E+L+++
Sbjct: 121 ESDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154
>gi|171057421|ref|YP_001789770.1| transcription elongation factor GreB [Leptothrix cholodnii SP-6]
gi|170774866|gb|ACB33005.1| transcription elongation factor GreB [Leptothrix cholodnii SP-6]
Length = 189
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ ++ EL ERPR+++A+S A GD SEN +Y K+ + R+ L
Sbjct: 33 MTPQGWSSLRAELMTLLDVERPRVVEAVSWAAKNGDRSENGDYIYGKKRLREIDRRIRFL 92
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV D S G D++ FGATV+ + GD++ I G E+D G VS SP
Sbjct: 93 TKRLDIAEVADPSLHHGSDQVFFGATVTYA-NSRGDERTVTIKGIDESDSLKGEVSWVSP 151
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IARALI GD + + PGG + E+L+V
Sbjct: 152 IARALIKAREGDEVQLMTPGGLERLEVLEV 181
>gi|153941346|ref|YP_001390030.1| transcription elongation factor GreA [Clostridium botulinum F str.
Langeland]
gi|152937242|gb|ABS42740.1| transcription elongation factor GreA [Clostridium botulinum F str.
Langeland]
gi|295318115|gb|ADF98492.1| transcription elongation factor GreA [Clostridium botulinum F str.
230613]
Length = 154
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+I+ A VID + D+ G A + VE + N +V +A+ + L+S+
Sbjct: 65 LTMISTASVID--EKNQDKSVLGVNSKAKIKFVEDEF--ETNVSLVTTMDAEPEKMLISV 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL+GK++GD+ V+APG + T E+L+++
Sbjct: 121 ESDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154
>gi|149927812|ref|ZP_01916063.1| transcription elongation factor GreB [Limnobacter sp. MED105]
gi|149823434|gb|EDM82665.1| transcription elongation factor GreB [Limnobacter sp. MED105]
Length = 185
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG+ +++ EL + ERP ++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 32 ITPKGYRRLRDELTHLVKTERPEVVSVVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
AEV+D +T + I FGATV+ + + G++ +IVG E D G +S SP
Sbjct: 92 TKRTEIAEVVDPATQQELESIFFGATVTYI-NSKGEELTVKIVGVDEVDTAKGHISWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARAL+ + GD++ + P G EI++V ++
Sbjct: 151 VARALLKAKEGDVVQLMTPAGRDELEIVEVRYV 183
>gi|262369479|ref|ZP_06062807.1| transcription elongation factor and transcript cleavage
[Acinetobacter johnsonii SH046]
gi|262315547|gb|EEY96586.1| transcription elongation factor and transcript cleavage
[Acinetobacter johnsonii SH046]
Length = 157
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G+ ++Q EL ++ERP I K +S A + GD SENA+Y K + R+ L
Sbjct: 6 LTAEGYQRLQDELNDLVRKERPEITKIVSWAASLGDRSENADYIYNKRKLREIDRRIRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A ++ S + FGA V L E + G+ ++IVGD E + +S+ SPI
Sbjct: 66 TKLFEVAYKVEYSPEQDGKAYFGAWVEL-ENDEGEIIKFRIVGDDEIYGRKDYISLQSPI 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+A +GK + D I V+ P G+K + I ++ +
Sbjct: 125 AKACLGKSVDDEIQVHTPTGKKNWYIAKIFY 155
>gi|293381483|ref|ZP_06627478.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus crispatus 214-1]
gi|290921953|gb|EFD98960.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus crispatus 214-1]
Length = 147
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK + R+ L +
Sbjct: 5 GYQQIEDEI-ARLKKDRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYLGKQL 63
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
AE++ ++ G TV L + + + Y++VG EAD+ +G VS SP+ +A+
Sbjct: 64 KYAEIV--KAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPLGQAI 121
Query: 131 IGKELGDIISVNAPGGEKTYEILQV 155
+ KE G +V AP GE I++V
Sbjct: 122 MKKEAGTTATVAAPVGEYQVTIVEV 146
>gi|224542870|ref|ZP_03683409.1| hypothetical protein CATMIT_02064 [Catenibacterium mitsuokai DSM
15897]
gi|224524200|gb|EEF93305.1| hypothetical protein CATMIT_02064 [Catenibacterium mitsuokai DSM
15897]
Length = 162
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 93/156 (59%), Gaps = 8/156 (5%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K+ ++ +GF+K++ E ERP +I+ I AR+ GDLSENA+Y AA++ Q E
Sbjct: 4 MDKKVQISREGFEKLKAERENLINVERPAVIEEIKLARSQGDLSENADYDAARDKQARIE 63
Query: 61 GRMAELENIITRAEVI--DISTMSGDRIAFGATVSLVE--KNSGDKKNYQIVGDQEADVQ 116
R+ ELE ++ A +I D+ + + GATV++++ + + + + I+G E D
Sbjct: 64 ERIKELEVMMQNAVIIGSDVK-VDTHVVNLGATVTVLDLSEENPEPDTFTILGSTETDPL 122
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
G +S SP+A+AL+ ++GD+++V G K Y++
Sbjct: 123 HGKISNESPLAKALMTHKIGDVVTV---GVAKPYDV 155
>gi|307718793|ref|YP_003874325.1| hypothetical protein STHERM_c11070 [Spirochaeta thermophila DSM
6192]
gi|306532518|gb|ADN02052.1| hypothetical protein STHERM_c11070 [Spirochaeta thermophila DSM
6192]
Length = 898
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I VT + Q+EL++ + E P+ K IS+A GDL ENAEY+AAKE Q + +
Sbjct: 742 IMVTPAAYAAKQKELKYLHEVEVPKNSKEISQALLLGDLRENAEYKAAKERQEMLNSTIG 801
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+L+ + RA+++ + +I+FG V+L+ K + ++ Y I+G E++ G++S S
Sbjct: 802 KLKEELERAQIVRPDEVDASQISFGTKVTLLNKETKKRETYVILGPWESNPDKGIISYLS 861
Query: 125 PIARALIGKELGDIISVNAPGGEKTYE 151
P L G + G+ + E+TY
Sbjct: 862 PFGSELYGHKEGEELEFTI--NERTYH 886
>gi|325971211|ref|YP_004247402.1| transcription elongation factor GreA [Spirochaeta sp. Buddy]
gi|324026449|gb|ADY13208.1| transcription elongation factor GreA [Spirochaeta sp. Buddy]
Length = 906
Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/130 (34%), Positives = 70/130 (53%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T+ + ++EL + Q E P + + I AR GDL EN+EY+ KE QNL + L
Sbjct: 754 TAASLEAKKKELEYIQHVELPEVAREIGTAREMGDLRENSEYKYGKEKQNLLNNTLRRLA 813
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I RA VI + +I FG V LV+ G + Y I+G E++ ++++S+P
Sbjct: 814 EEIDRATVISKDKVDTTKIGFGTKVVLVDHTKGSEVVYTIMGPWESNPDENIINLSAPFG 873
Query: 128 RALIGKELGD 137
RAL+ E+G+
Sbjct: 874 RALLNHEIGE 883
>gi|317406344|gb|EFV86575.1| transcription elongation factor [Achromobacter xylosoxidans C54]
Length = 183
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+++++ EL ERP +++ +S A + GD SEN +Y K+ + RM L
Sbjct: 31 MTPEGYERLRGELTHLMNVERPAVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D + D++ FGATV L +G+ IVG EA+ +G +S SP
Sbjct: 91 TKRLDIAEVVDPAAQPNRDQVFFGATV-LYSDKAGEDHTVTIVGVDEAEPLAGKISWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALI GD + + PGG + +IL+V +
Sbjct: 150 VARALIKAREGDTVVLRTPGGIEELDILEVRY 181
>gi|39938788|ref|NP_950554.1| transcription elongation factor [Onion yellows phytoplasma OY-M]
gi|39721897|dbj|BAD04387.1| transcription elongation factor [Onion yellows phytoplasma OY-M]
Length = 170
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 88/147 (59%), Gaps = 3/147 (2%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +KI +T G +K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L
Sbjct: 15 MNNKIYELTQSGIEKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 74
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD +
Sbjct: 75 EHRISEIQNILKNVRVVKVSKER--EVSIGKKVSLELLHTKQQQEIELVSTLEADPFNNK 132
Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146
+SI SP+ + + G ++GD++ V G
Sbjct: 133 ISIESPLGQNIKGHQIGDVVFVTGETG 159
>gi|254252970|ref|ZP_04946288.1| Transcription elongation factor [Burkholderia dolosa AUO158]
gi|124895579|gb|EAY69459.1| Transcription elongation factor [Burkholderia dolosa AUO158]
Length = 187
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLKDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S + D++ FGATV + GD+ IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQENTDQVFFGATVDYATPD-GDEHTITIVGIDEVDLDRGHVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARALI ++GD +++ P G + ++L V +
Sbjct: 150 IARALIKAKVGDTVTLMTPAGPQPIDVLDVRY 181
>gi|148548662|ref|YP_001268764.1| transcription elongation factor GreB [Pseudomonas putida F1]
gi|148512720|gb|ABQ79580.1| transcription elongation factor GreB [Pseudomonas putida F1]
Length = 162
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ S R+ FGA V +E + G+ ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDVKVVAYSPEQEGRVFFGAWVE-IENDDGETMKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE GD + V+ P GE T+ +
Sbjct: 125 ARALLKKEEGDEVVVHTPTGEATWYV 150
>gi|325923368|ref|ZP_08185038.1| transcription elongation factor GreB [Xanthomonas gardneri ATCC
19865]
gi|325546138|gb|EGD17322.1| transcription elongation factor GreB [Xanthomonas gardneri ATCC
19865]
Length = 187
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+
Sbjct: 34 ITPDGHARLKAELEDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 91
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+D + + FGA V L + +SGD +Y++VG E D G +SI S
Sbjct: 92 YLSKRLEALRVVDTAPTDPRAVFFGAQVELEDADSGDLLHYRVVGPDETDAGRGWISIDS 151
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ K + D P G+ T+ ++ V
Sbjct: 152 PLARALLKKRVDDEFEAQLPSGKYTFVVVSV 182
>gi|332298363|ref|YP_004440285.1| transcription elongation factor GreA [Treponema brennaborense DSM
12168]
gi|332181466|gb|AEE17154.1| transcription elongation factor GreA [Treponema brennaborense DSM
12168]
Length = 899
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 73/126 (57%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT+K F++ +Q+L + P K I EA A GDL ENAEY+AAKE Q L +L
Sbjct: 746 VTAKMFEQKKQQLEHITSVDIPANSKEIGEALAQGDLRENAEYKAAKERQTLLASTATKL 805
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ I RA + D +T + R++FG V+L SG+ + Y I+G E+D + ++S SP
Sbjct: 806 QDEINRARIFDPTTGTTARVSFGTVVTLKNDVSGESEEYTILGPWESDPDNKVISYMSPF 865
Query: 127 ARALIG 132
A++
Sbjct: 866 GNAILN 871
>gi|113866980|ref|YP_725469.1| transcription elongation factor GreB [Ralstonia eutropha H16]
gi|113525756|emb|CAJ92101.1| transcription elongation factor [Ralstonia eutropha H16]
Length = 187
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G+++++ EL +RP +++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 32 ITAEGYNRLRNELMQLIDVDRPDVVQIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ +AEV+D S D+I FGATV+ + +G++ IVG E D+ S VS SP
Sbjct: 92 TRRLDKAEVVDPSLQGDNDQIFFGATVTYANR-AGEETTITIVGMDEVDLDSNHVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ALI GD +++ P G + +IL+V +
Sbjct: 151 IAKALIKAREGDTVALRTPAGVEQIDILEVRY 182
>gi|126664546|ref|ZP_01735530.1| transcription elongation factor GreB [Marinobacter sp. ELB17]
gi|126630872|gb|EBA01486.1| transcription elongation factor GreB [Marinobacter sp. ELB17]
Length = 157
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 83/147 (56%), Gaps = 3/147 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D +QQEL + ERP + + ++ A GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYDLLQQELDQLWRHERPEVTRKVTWAAGLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGLVSISSP 125
+V+ S ++ FGA +SL++++ DK ++IVG E ++ S+ +P
Sbjct: 66 RKRFEELKVVAYSPEQEGKVFFGAWISLLDED--DKPLTFRIVGPDEIYGRNDYASVDAP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ RA + KE+GD + V P GEKT+ I
Sbjct: 124 LVRACLKKEVGDEVVVILPAGEKTWLI 150
>gi|206561354|ref|YP_002232119.1| transcription elongation factor GreB [Burkholderia cenocepacia
J2315]
gi|198037396|emb|CAR53331.1| transcription elongation factor [Burkholderia cenocepacia J2315]
Length = 187
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S D++ FGATV E G+ IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQENVDQVFFGATVDY-ETPDGEDHTVTIVGIDEVDLDRGCVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALI ++GD +++ P G + +IL V +
Sbjct: 150 VARALIKAKIGDTVTLMTPAGPQPIDILDVRY 181
>gi|291536540|emb|CBL09652.1| transcription elongation factor GreA [Roseburia intestinalis M50/1]
Length = 167
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+++E+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTEQDIKKMEEEIEYRKLVVRKEALEAVKEARAQGDLSENFEYHAAKKDKNQNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A+VI + + D + TV++ + +++ Y+IV + L+S SP+
Sbjct: 65 ERMIKTAKVISTDS-AEDEVGMNNTVTVYFEEDDEEEVYKIVTTVRGNSLKNLISNESPL 123
Query: 127 ARALIGKELGDIISV 141
+AL+G ++GD + V
Sbjct: 124 GKALLGHKVGDRVEV 138
>gi|89095170|ref|ZP_01168094.1| transcription elongation factor GreB [Oceanospirillum sp. MED92]
gi|89080528|gb|EAR59776.1| transcription elongation factor GreB [Oceanospirillum sp. MED92]
Length = 169
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 93/153 (60%), Gaps = 6/153 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T++G+ ++ EL++ + +RP + +++ EA A GD SENAEY K+L+ ++ R+
Sbjct: 15 ITAEGYKRLNDELKYLWKVKRPEVTQSVKEAAAQGDRSENAEYIYGKKQLREIDR-RVRY 73
Query: 66 LENIITRAEVIDISTMSG--DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L + V+D + D + FGA V+L+++ +K+ ++IVG E ++ +S+
Sbjct: 74 LSKRLEDMVVVDRAPTPDKQDTVFFGAWVTLLDEEELEKR-FRIVGPDEIGDEADYISVD 132
Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQV 155
SP+AR ++ K+LGD + + P G E YEIL++
Sbjct: 133 SPLARLILKKQLGDEVCLEKPDGSEAWYEILRI 165
>gi|107022081|ref|YP_620408.1| transcription elongation factor GreB [Burkholderia cenocepacia AU
1054]
gi|116689025|ref|YP_834648.1| transcription elongation factor GreB [Burkholderia cenocepacia
HI2424]
gi|170732314|ref|YP_001764261.1| transcription elongation factor GreB [Burkholderia cenocepacia
MC0-3]
gi|254246039|ref|ZP_04939360.1| Transcription elongation factor [Burkholderia cenocepacia PC184]
gi|105892270|gb|ABF75435.1| transcription elongation factor GreB [Burkholderia cenocepacia AU
1054]
gi|116647114|gb|ABK07755.1| transcription elongation factor GreB [Burkholderia cenocepacia
HI2424]
gi|124870815|gb|EAY62531.1| Transcription elongation factor [Burkholderia cenocepacia PC184]
gi|169815556|gb|ACA90139.1| transcription elongation factor GreB [Burkholderia cenocepacia
MC0-3]
Length = 187
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S D++ FGATV E G+ IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQENVDQVFFGATVDY-ETPDGEDHTVTIVGIDEVDLDRGCVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALI ++GD +++ P G + +IL V +
Sbjct: 150 VARALIKAKIGDTVTLMTPAGPQPIDILDVRY 181
>gi|162447758|ref|YP_001620890.1| transcription elongation factor GreA [Acholeplasma laidlawii PG-8A]
gi|229485767|sp|A9NGN4|GREA_ACHLI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|161985865|gb|ABX81514.1| transcription elongation factor [Acholeplasma laidlawii PG-8A]
Length = 158
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/146 (35%), Positives = 85/146 (58%), Gaps = 7/146 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G D+++ EL + +R ++A+ EAR GDLSENA+Y AA+ Q E R+ E+
Sbjct: 9 LTQSGLDQLKDELTHLKDVKRVENLEALKEAREQGDLSENADYDAARNEQARIEARILEI 68
Query: 67 ENIITRAEVI---DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+I+ ++I D ST I + VEKN + Y +VG EAD ++ +SI
Sbjct: 69 ESILKNVKIIRTNDDSTTVN--IGKKVLLHFVEKNKDVE--YHVVGTIEADPKNFKISIE 124
Query: 124 SPIARALIGKELGDIISVNAPGGEKT 149
SP+ RA+ GKE+GD++ + + +++
Sbjct: 125 SPLGRAIKGKEVGDLVQIKSATNKQS 150
>gi|325916905|ref|ZP_08179150.1| transcription elongation factor GreB [Xanthomonas vesicatoria ATCC
35937]
gi|325536851|gb|EGD08602.1| transcription elongation factor GreB [Xanthomonas vesicatoria ATCC
35937]
Length = 167
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+
Sbjct: 15 ITPEGHSRLKVELEDLWRVR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+D + + + FGA V L + +SG+ Y+IVG E D G +SI S
Sbjct: 73 YLSKRLEALRVVDTAPTDPNAVFFGAQVELEDADSGELLRYRIVGPDETDAVLGWISIDS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ K + D P G+ T+ ++ V
Sbjct: 133 PLARALLKKRVDDEFEAQLPAGKHTFVVVSV 163
>gi|291087950|ref|ZP_06347975.2| transcription elongation factor GreA [Clostridium sp. M62/1]
gi|291073509|gb|EFE10873.1| transcription elongation factor GreA [Clostridium sp. M62/1]
gi|295092686|emb|CBK78793.1| transcription elongation factor GreA [Clostridium cf.
saccharolyticum K10]
Length = 172
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KIQ+E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 10 LTQSDIRKIQEEIDYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNRNESRIRYL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN+I A V+ + S D + T++L ++ ++ Y++V + +SI SP+
Sbjct: 70 ENMIKNARVVSDKSRS-DEVGLNDTITLYFEDDDEEDVYRLVTSIRGNSLENKISIESPL 128
Query: 127 ARALIGKELGD--IISVNAPGG 146
+A+ G ++GD + VN G
Sbjct: 129 GKAVRGHKVGDRVYVEVNDRAG 150
>gi|226947932|ref|YP_002803023.1| transcription elongation factor GreA [Clostridium botulinum A2 str.
Kyoto]
gi|226844208|gb|ACO86874.1| transcription elongation factor GreA [Clostridium botulinum A2 str.
Kyoto]
Length = 154
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 90/154 (58%), Gaps = 8/154 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+I+ A VID + D+ G A + VE + N +V +A+ ++ L+S+
Sbjct: 65 LTMISTASVID--EKNQDKSVLGVNSKAKIKFVEDEF--ETNVSLVTTMDAEPENMLISV 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL+GK++GD+ V+APG + T E+++++
Sbjct: 121 ESDLGKALMGKKVGDVAEVDAPGEKYTVEVIEII 154
>gi|87199462|ref|YP_496719.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
gi|87135143|gb|ABD25885.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
Length = 182
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D P+T GF ++ ERP I++ +S A GD SEN +Y ++ +
Sbjct: 25 DGHPITPAGFAALRARYDHLLGTERPAIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRE 84
Query: 63 MAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+A L + + V+D + R+ FGATV + +++ ++K +VGD E D GL+
Sbjct: 85 LAFLARRMKASRVVDPARQEDRSRVLFGATVEIADEDD-NRKVLTLVGDDEQDASKGLIG 143
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S+PIA+AL G +GD+ V P G+K +EI+ +
Sbjct: 144 WSAPIAKALRGSRVGDLRIVRLPSGQKEWEIMAI 177
>gi|300311440|ref|YP_003775532.1| transcription elongation/transcript cleavage factor protein
[Herbaspirillum seropedicae SmR1]
gi|300074225|gb|ADJ63624.1| transcription elongation/transcript cleavage factor protein
[Herbaspirillum seropedicae SmR1]
Length = 185
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +I+ EL EERP +++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 31 MTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S G D+I FGATV+ E G+ IVG E D G +S SP
Sbjct: 91 TKRLDNAEVVDPSVHHGSDQIFFGATVTY-ENQRGEAHTVTIVGIDELDPLKGRISWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL GD + + P G + IL+V +
Sbjct: 150 VARALTKAREGDEVVLQTPAGLEQLTILEVSY 181
>gi|225420455|ref|ZP_03762758.1| hypothetical protein CLOSTASPAR_06800 [Clostridium asparagiforme
DSM 15981]
gi|225040905|gb|EEG51151.1| hypothetical protein CLOSTASPAR_06800 [Clostridium asparagiforme
DSM 15981]
Length = 155
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 1/127 (0%)
Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
+ +E+ R+ R ++A+ EARA+GDLSEN EY+AAK+ +N NE R+ LE +I A+
Sbjct: 1 MMEEIEHRKLVVRRECLEAVKEARAHGDLSENFEYKAAKQDKNRNESRIRYLERMIKTAK 60
Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134
+I + S D + TV + + + Y+IV + GL+SI SP+ +AL+G +
Sbjct: 61 IISDKS-SSDEVGLNDTVEVYIPEDDETERYKIVTTVRGNSLKGLISIDSPLGKALLGHK 119
Query: 135 LGDIISV 141
G+ + V
Sbjct: 120 AGETVYV 126
>gi|288957371|ref|YP_003447712.1| transcription elongation factor [Azospirillum sp. B510]
gi|288909679|dbj|BAI71168.1| transcription elongation factor [Azospirillum sp. B510]
Length = 183
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T GF ++Q+ELR + ERP++++ +S A GD SEN +Y K+ + R+ L
Sbjct: 31 MTPPGFQRMQEELRHLLRVERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V++ +++ FGATV+ + G + IVG E D G VS SP
Sbjct: 91 NKRLESAVVVNPQDQKNREQVFFGATVTYA-REDGSENTVTIVGADEVDPDRGHVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ GD++ V P G + E+L++ +
Sbjct: 150 IARALLKAREGDMVDVRTPAGMEQVEVLEIRY 181
>gi|322804996|emb|CBZ02556.1| transcription elongation factor GreA [Clostridium botulinum H04402
065]
Length = 154
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 4/152 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD--KKNYQIVGDQEADVQSGLVSISS 124
+I+ A VID + D+ G K D + N +V +A+ + L+S+ S
Sbjct: 65 LTMISTASVID--EKNQDKSVLGVNSKCKIKFVEDEFETNVSLVTTMDAEPEKMLISVES 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +AL+GK++GD+ V+APG + T E+L+++
Sbjct: 123 DLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154
>gi|144898302|emb|CAM75166.1| Prokaryotic transcription elongation factor GreA/GreB
[Magnetospirillum gryphiswaldense MSR-1]
Length = 180
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 86/153 (56%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G + +EL + ERPRI++ +S A GD SEN +Y K+ + R+ L
Sbjct: 27 VTPQGHRALIEELDQLWRVERPRIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRFL 86
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I +EV+ + R+ FGATV+ E++ ++K +VG EAD+ G VS SP
Sbjct: 87 RKRIENSEVVAPELQTDRSRVYFGATVTYAEEDGAERK-VTLVGVDEADINHGKVSWVSP 145
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARAL+ E+GD + + +P G + E++ + ++
Sbjct: 146 VARALLRAEVGDTVIIRSPTGRREIEVVAIEYL 178
>gi|170720942|ref|YP_001748630.1| transcription elongation factor GreB [Pseudomonas putida W619]
gi|169758945|gb|ACA72261.1| transcription elongation factor GreB [Pseudomonas putida W619]
Length = 157
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ S ++ FGA V +E + G+ ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDVKVVAYSPQQEGKVFFGAWVE-IENDDGETLKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE GD + V+ P GE T+ +
Sbjct: 125 ARALLKKEKGDEVVVHTPTGEATWYV 150
>gi|212716148|ref|ZP_03324276.1| hypothetical protein BIFCAT_01063 [Bifidobacterium catenulatum DSM
16992]
gi|225351851|ref|ZP_03742874.1| hypothetical protein BIFPSEUDO_03453 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|212661515|gb|EEB22090.1| hypothetical protein BIFCAT_01063 [Bifidobacterium catenulatum DSM
16992]
gi|225157098|gb|EEG70437.1| hypothetical protein BIFPSEUDO_03453 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 159
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 82/142 (57%), Gaps = 7/142 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +DK+++EL WR+ E R I+ +S ARA GDLSEN YQAA+E Q +N+GR+ EL
Sbjct: 9 LTQEAYDKMKEELAWREGEYRDEILSKVSAARAEGDLSENGGYQAAREAQRVNQGRIEEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSISS 124
+ A++ ++ + G+ V+L + ++ ++G ++ + + ++S S
Sbjct: 69 TVKLRNAKI--LTAPKAGEVGDGSLVTL---DVNGREMVYVLGTRDLSIATDYSIISPES 123
Query: 125 PIARALIGKELGDIISVNAPGG 146
PI A+ G GD +S AP G
Sbjct: 124 PIGAAINGAHEGDTVSYTAPNG 145
>gi|167032925|ref|YP_001668156.1| transcription elongation factor GreB [Pseudomonas putida GB-1]
gi|166859413|gb|ABY97820.1| transcription elongation factor GreB [Pseudomonas putida GB-1]
Length = 156
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ S ++ FGA V +E + G+ ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDVKVVAYSPQQEGKVFFGAWVE-IENDEGETMKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE GD + V+ P GE T+ +
Sbjct: 125 ARALLKKEEGDEVVVHTPTGEATWYV 150
>gi|188990994|ref|YP_001903004.1| transcription elongation factor GreB [Xanthomonas campestris pv.
campestris str. B100]
gi|167732754|emb|CAP50948.1| greB [Xanthomonas campestris pv. campestris]
Length = 168
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+
Sbjct: 15 ITPEGHARLKAELDELWRLR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+D + + FGA + L + +SG+ Y+IVG E D SG +SI S
Sbjct: 73 YLSKRLEALRVVDTAPTDPQAVFFGAQIELEDADSGELLRYRIVGPDETDAGSGWISIDS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ K + D P G+ T+ ++ V
Sbjct: 133 PLARALLKKRVDDEFEAQLPSGKHTFVVVVV 163
>gi|119025670|ref|YP_909515.1| transcription elongation factor GreA [Bifidobacterium adolescentis
ATCC 15703]
gi|154487515|ref|ZP_02028922.1| hypothetical protein BIFADO_01370 [Bifidobacterium adolescentis
L2-32]
gi|118765254|dbj|BAF39433.1| transcription elongation factor GreA [Bifidobacterium adolescentis
ATCC 15703]
gi|154084033|gb|EDN83078.1| hypothetical protein BIFADO_01370 [Bifidobacterium adolescentis
L2-32]
Length = 159
Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 84/144 (58%), Gaps = 7/144 (4%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T + +DK+++EL WR+ E R I+ +S ARA GDLSEN YQAA+E Q +N+GR+
Sbjct: 7 ILLTQEAYDKMKEELAWREGEYRDEILSKVSAARAEGDLSENGGYQAAREAQRVNQGRID 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSI 122
EL + A++ ++ + G+ V+L E N ++ ++G ++ + + ++S
Sbjct: 67 ELTVKLRNAKI--LTAPKAGEVGDGSLVTL-EVNG--REMVYVLGTRDLSIATDYSIISP 121
Query: 123 SSPIARALIGKELGDIISVNAPGG 146
SPI A+ G GD ++ AP G
Sbjct: 122 ESPIGAAINGAHAGDTVTYTAPNG 145
>gi|90416385|ref|ZP_01224317.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2207]
gi|90332110|gb|EAS47324.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2207]
Length = 165
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 81/149 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ E+ + ERP++ + EA GD SEN +Y K + R+ L
Sbjct: 15 ITPEGASKMRAEVHQLWKVERPKVTHIVHEAAKNGDRSENGDYIYGKRRLREIDSRVRYL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I A +++ ++ F A V++ +++SG++ Y++VG E D +SI SP+
Sbjct: 75 TKRIEDATIVEDKPRDPSKVFFAAWVTVEDEDSGEEHIYRLVGSDEIDSALNWISIDSPM 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+GK + D ++V P G++ I ++
Sbjct: 135 ARALVGKSIDDEVNVKTPAGDRCLIITEI 163
>gi|331087098|ref|ZP_08336171.1| hypothetical protein HMPREF0987_02474 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409187|gb|EGG88638.1| hypothetical protein HMPREF0987_02474 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 167
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K+++E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTKNDIKKMREEIEYRKIVLRKELLEDVKEARAHGDLSENFEYHAAKKEKNKNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A+++ + D + TV L + + + +++V + GL+S SPI
Sbjct: 65 ERMIKTAKIVSDESKE-DEVGLNNTVHLYFEEDDEVEVFKLVTTVRGNSLKGLISTESPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+ ++GK+ GD + + G Y +++
Sbjct: 124 GKVILGKKAGDRVFIRVSGDAGYYVVIK 151
>gi|152981655|ref|YP_001353015.1| transcription elongation factor GreB [Janthinobacterium sp.
Marseille]
gi|151281732|gb|ABR90142.1| transcription elongation factor GreB [Janthinobacterium sp.
Marseille]
Length = 183
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 8/160 (5%)
Query: 5 IPVTSKGFDKIQQELRWRQQ------EERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
IP +K + Q LR + + ERP +++ +S A + GD SEN +Y K
Sbjct: 21 IPAGAKNYMTPQGHLRMKTELLKLIDVERPEVVQIVSWAASNGDRSENGDYIYGKRRLRQ 80
Query: 59 NEGRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
+GR+ L + AEV+D S G D+I FGATV E +GD+ I+G E D +
Sbjct: 81 IDGRIRFLTKRLDLAEVVDPSIHHGSDQIFFGATVRY-ETQAGDEHTVTILGIDELDPLN 139
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
G +S SP+ARAL GD + + PGG + IL+V +
Sbjct: 140 GKISWISPVARALTKAREGDTVVLKTPGGLEELLILEVTY 179
>gi|307730694|ref|YP_003907918.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
gi|307585229|gb|ADN58627.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
Length = 206
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL ERP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 49 ITPAGYRRMRDELLQLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 108
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S D++ FGATV ++ G++ IVG E D+ G VS SP
Sbjct: 109 TKRLDLAEVVDSSKQENVDQVFFGATVEYATED-GEEHTVTIVGIDEVDLDIGHVSWISP 167
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IARAL+ ++GD +++ P G + +IL V
Sbjct: 168 IARALLKGKVGDTVTLYTPAGPQPIDILDV 197
>gi|226951512|ref|ZP_03821976.1| transcription elongation factor GreB [Acinetobacter sp. ATCC 27244]
gi|226837748|gb|EEH70131.1| transcription elongation factor GreB [Acinetobacter sp. ATCC 27244]
Length = 158
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G D + EL+ +ERP I K ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRTGHDLLVAELKRLWHDERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125
+ +++D ++ FGA V +E +G++K +IVG D+ D +SI SP
Sbjct: 66 GKRLEELKIVDYVPEQEGKVYFGAWVE-IENEAGEQKILRIVGVDEIYDHHPQHISIESP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+ K++ D + V+ P G+K + I
Sbjct: 125 MARALLTKQVDDEVEVHTPLGKKVWYI 151
>gi|85060298|ref|YP_456000.1| transcription elongation factor GreB [Sodalis glossinidius str.
'morsitans']
gi|84780818|dbj|BAE75595.1| transcription elongation factor GreB [Sodalis glossinidius str.
'morsitans']
Length = 155
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/146 (36%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ ++Q EL + RP I + ++ A + GD SENA+Y K++ + R+ L
Sbjct: 6 ITRQGYQELQDELDHLWKRYRPEITEKVAWAASLGDRSENADYHYNKKILREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ A V+D S RI FGA V VE G+ K ++I G E +SI SP+
Sbjct: 66 RRVLKEARVVDYSPQQEGRIFFGAWVE-VENAEGETKRFRIAGPDEIYKHKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARALI K + D V PGG +T+ I
Sbjct: 125 ARALIKKAVDDEAEVVTPGGHRTWYI 150
>gi|269925131|ref|YP_003321754.1| transcription elongation factor GreA [Thermobaculum terrenum ATCC
BAA-798]
gi|269788791|gb|ACZ40932.1| transcription elongation factor GreA [Thermobaculum terrenum ATCC
BAA-798]
Length = 159
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 5/156 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+++ +T +G ++++EL + ER +I I EA+ GD+SE+ EY+ AK Q EGR
Sbjct: 5 ERVRLTEQGLKELREELERLRTVERAKISARIREAKEGGDISESGEYEDAKHSQAFLEGR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-QSGLVS 121
+ ELE ++ AEVID S + G+ V+ VE+N G Y IV EA + G V
Sbjct: 65 IKELEKLLANAEVIDRSAQPAGTVGLGSKVT-VEEN-GRTYTYTIVDGAEAGRGRDGEVR 122
Query: 122 IS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
IS S + AL+G+ +GD + V P G+ T++IL V
Sbjct: 123 ISSKSAVGSALLGRRVGDSVEVEVPAGKLTFKILSV 158
>gi|294651152|ref|ZP_06728486.1| transcription elongation factor GreB [Acinetobacter haemolyticus
ATCC 19194]
gi|292822948|gb|EFF81817.1| transcription elongation factor GreB [Acinetobacter haemolyticus
ATCC 19194]
Length = 158
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G D + EL+ +ERP I K ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRTGHDLLVAELKKLWHDERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125
+ +++D ++ FGA V +E +G++K +IVG D+ D +SI SP
Sbjct: 66 GKRLEELKIVDYVPEQEGKVYFGAWVE-IENEAGEQKILRIVGIDEIYDHHPQHISIESP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+ K++ D + V+ P G+K + I
Sbjct: 125 MARALLTKQVDDEVEVHTPLGKKVWYI 151
>gi|73542156|ref|YP_296676.1| transcription elongation factor GreB [Ralstonia eutropha JMP134]
gi|72119569|gb|AAZ61832.1| transcription elongation factor GreB [Ralstonia eutropha JMP134]
Length = 188
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G+++++ EL +RP +++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 32 ITADGYNRLRNELMHLIDVDRPDVVQIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ +AEV+D S D+I FGATV+ + SG++ IVG E D+ + VS SP
Sbjct: 92 TRRLDKAEVVDPSLQGDNDQIFFGATVTYANQ-SGEETTITIVGMDEVDLDTNHVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ALI GD +++ P G + +IL V +
Sbjct: 151 IAKALIKAREGDTVALRTPAGVEQIDILDVSY 182
>gi|240047822|ref|YP_002961210.1| transcription elongation factor GreA [Mycoplasma conjunctivae
HRC/581]
gi|239985394|emb|CAT05407.1| Transcription elongation factor [Mycoplasma conjunctivae]
Length = 161
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 86/142 (60%), Gaps = 2/142 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++I +T + ++++QEL ER +I+ I AR GDLSENAEY AA+E Q + E R
Sbjct: 7 NQILLTKEKLEELKQELNNLINIERNNVIEEIKYARQQGDLSENAEYDAAREKQGVIESR 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGLVS 121
+ EL+ IIT+A++I +T S I+ G+ V++ + +QIVG +AD +S
Sbjct: 67 IRELDAIITKAQIIRTNTGSSS-ISVGSKVTIENLKNNKINTFQIVGSSIDADPFQNKIS 125
Query: 122 ISSPIARALIGKELGDIISVNA 143
ISS A+A++G+ GD + V+
Sbjct: 126 ISSAFAQAIMGQHEGDELDVDT 147
>gi|240147556|ref|ZP_04746157.1| transcription elongation factor GreA [Roseburia intestinalis L1-82]
gi|257200241|gb|EEU98525.1| transcription elongation factor GreA [Roseburia intestinalis L1-82]
gi|291538590|emb|CBL11701.1| transcription elongation factor GreA [Roseburia intestinalis XB6B4]
Length = 167
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 81/135 (60%), Gaps = 1/135 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+++E+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTEQDIKKMEEEIEYRKLVVRKEALEAVKEARAQGDLSENFEYHAAKKDKNQNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A+VI + + D + TV++ + +++ Y++V + L+S SP+
Sbjct: 65 ERMIKTAKVISTDS-AEDEVGMNNTVTVYFEEDDEEEVYKLVTTVRGNSLKNLISNESPL 123
Query: 127 ARALIGKELGDIISV 141
+AL+G ++GD + V
Sbjct: 124 GKALLGHKVGDRVEV 138
>gi|262371975|ref|ZP_06065254.1| transcription elongation factor GreB [Acinetobacter junii SH205]
gi|262312000|gb|EEY93085.1| transcription elongation factor GreB [Acinetobacter junii SH205]
Length = 162
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 83/147 (56%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G D + EL+ +ERP I K ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRTGHDLLVAELKKLWHDERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125
+ +++D ++ FGA V +E ++G++K +IVG D+ D +SI SP
Sbjct: 66 GKRLEELKIVDYVPEQEGKVYFGAWVE-IENDAGEQKTLRIVGVDEIYDHHPQHISIESP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+ K++ D + V P G+K + I
Sbjct: 125 MARALLSKQVDDEVEVITPLGKKLWYI 151
>gi|34498839|ref|NP_903054.1| transcription elongation factor GreB [Chromobacterium violaceum
ATCC 12472]
gi|34104691|gb|AAQ61048.1| transcription elongation factor [Chromobacterium violaceum ATCC
12472]
Length = 184
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL ERP I++ ++ A + GD SEN +Y K + R+ L
Sbjct: 30 ITPMGWQRLKDELYHLVNRERPEIVQVVNWAASNGDRSENGDYLYGKRRLREIDRRIRFL 89
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D D++ F ATV L+++ G ++ IVG E D+Q G +S SP
Sbjct: 90 TKRLEIAEVVDPEAREATDQVFFSATV-LIQRGDGSEQRLSIVGVDEIDLQRGRISWISP 148
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARAL+ GD + P G++ E+L+V ++
Sbjct: 149 IARALLKSREGDTVLFRGPDGDEDIEVLEVSYV 181
>gi|222110079|ref|YP_002552343.1| transcription elongation factor greb [Acidovorax ebreus TPSY]
gi|221729523|gb|ACM32343.1| transcription elongation factor GreB [Acidovorax ebreus TPSY]
Length = 186
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ ++++EL +ERP++++ + A + GD SEN +Y K+ + R+ L
Sbjct: 30 ITPQGYARLRRELLDLIDDERPKVVEIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+D S +G D++ FGATV+ E++ G ++ I+G EAD +S SP
Sbjct: 90 TKRLEIADVVDPSVHTGSDQVFFGATVTYAEED-GVERTVTILGIDEADNSLQQISWISP 148
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ARAL+ GD +++ P G +T EIL+V
Sbjct: 149 VARALLKAREGDEVTLQTPAGLRTLEILRV 178
>gi|167837497|ref|ZP_02464380.1| transcription elongation factor GreB [Burkholderia thailandensis
MSMB43]
Length = 187
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL EERP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLHLIDEERPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S + D++ FGATV ++ G + IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GTEHTVTIVGVDEVDLDRGHVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ +GD +++ P G + ++L V +
Sbjct: 150 VARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181
>gi|167581001|ref|ZP_02373875.1| transcription elongation factor GreB [Burkholderia thailandensis
TXDOH]
Length = 187
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL EERP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLHLIDEERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S + D++ FGATV ++ G + IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GIEHTVTIVGIDEVDLDRGHVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ +GD +++ P G + ++L V +
Sbjct: 150 IARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181
>gi|254480189|ref|ZP_05093437.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2148]
gi|214039751|gb|EEB80410.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2148]
Length = 165
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G ++ EL + ERP I + EA GD SEN +Y K + R+ L
Sbjct: 15 ITPEGEKALRDELHQLWKVERPVITNTVHEAAKNGDRSENGDYIYGKRRLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ EV++ S +I FGA V+L E G + ++IVG E ++++G +S+ SP+
Sbjct: 75 NKRLDELEVVERSPDDTSKIRFGAWVTL-ETEDGQEHRWRIVGPDEFELKTGKLSMDSPM 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AR+++GK L D + V +P GE+ Y ++ +
Sbjct: 134 ARSMLGKGLDDEVVVQSPSGEQVYYVVGI 162
>gi|115374183|ref|ZP_01461470.1| transcription elongation factor GreB [Stigmatella aurantiaca
DW4/3-1]
gi|115368850|gb|EAU67798.1| transcription elongation factor GreB [Stigmatella aurantiaca
DW4/3-1]
Length = 144
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/134 (37%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD- 84
ERP++ +S A A GD SENAEY K+ + R+ L+ + A ++ + +
Sbjct: 12 ERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRRIRFLQKRLDTATIVTPAEQTDQG 71
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
R+ FGATV+L E G + YQIVG E D Q G +S+ SPI +AL+ K +GD + V P
Sbjct: 72 RVYFGATVTL-EDEDGVQTTYQIVGSDEIDTQGGRISVESPIGKALLRKAVGDSVEVMRP 130
Query: 145 GGEKTYEILQVLWI 158
GE I+ + ++
Sbjct: 131 RGEIELTIVAIAYM 144
>gi|320528378|ref|ZP_08029540.1| putative transcription elongation factor GreA [Solobacterium moorei
F0204]
gi|320131292|gb|EFW23860.1| putative transcription elongation factor GreA [Solobacterium moorei
F0204]
Length = 158
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 91/155 (58%), Gaps = 4/155 (2%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K +T +G K+Q E R + + ++EARA GDLSENA+Y AA++ Q E R
Sbjct: 5 NKTYLTEEGLKKLQDEYYNLVHVVREEVKQELAEARAQGDLSENADYDAARDEQAKVEAR 64
Query: 63 MAELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+A LE ++ E+ID + +G + + G++V+L ++ ++ Y IVG E+D +G +
Sbjct: 65 IATLEYMLRNYELID-TKKAGKKSAVHIGSSVTLFFNDTKEEVTYNIVGSTESDPLNGRL 123
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S +P+A+A++ ++GD+ V T EI+++
Sbjct: 124 SNETPLAQAILDHKVGDVCEVRV-ANPYTVEIIKI 157
>gi|264679927|ref|YP_003279836.1| Kelongation factor GreB [Comamonas testosteroni CNB-2]
gi|262210442|gb|ACY34540.1| Kelongation factor GreB [Comamonas testosteroni CNB-2]
Length = 231
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +I+ EL ERP+I++ + A + GD SEN +Y K+ + R+ L
Sbjct: 74 ITPQGYQRIKDELLDLIDNERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 133
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D + +G D++ FGATVS V+ + G ++ I+G EAD VS +P
Sbjct: 134 TKRLEIAEVVDPAVHAGSDQVFFGATVSYVD-DEGVERTITIMGIDEADSAQNQVSWIAP 192
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++RAL+ +GD +++ P G + EIL V +
Sbjct: 193 VSRALLKARVGDEVALPTPAGVRMLEILDVSY 224
>gi|115350916|ref|YP_772755.1| transcription elongation factor GreB [Burkholderia ambifaria AMMD]
gi|170698517|ref|ZP_02889588.1| transcription elongation factor GreB [Burkholderia ambifaria
IOP40-10]
gi|171315539|ref|ZP_02904775.1| transcription elongation factor GreB [Burkholderia ambifaria MEX-5]
gi|172059929|ref|YP_001807581.1| transcription elongation factor GreB [Burkholderia ambifaria
MC40-6]
gi|115280904|gb|ABI86421.1| transcription elongation factor GreB [Burkholderia ambifaria AMMD]
gi|170136601|gb|EDT04858.1| transcription elongation factor GreB [Burkholderia ambifaria
IOP40-10]
gi|171099376|gb|EDT44114.1| transcription elongation factor GreB [Burkholderia ambifaria MEX-5]
gi|171992446|gb|ACB63365.1| transcription elongation factor GreB [Burkholderia ambifaria
MC40-6]
Length = 187
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S D++ FGATV + G+ IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEDHTITIVGIDEVDLDHGCVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALI ++GD +++ P G + ++L V +
Sbjct: 150 VARALIKAKIGDTVTLMTPAGPQPIDVLDVRY 181
>gi|325955918|ref|YP_004286528.1| transcription elongation factor GreA [Lactobacillus acidophilus
30SC]
gi|325332483|gb|ADZ06391.1| transcription elongation factor GreA [Lactobacillus acidophilus
30SC]
gi|327182753|gb|AEA31200.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
1118]
Length = 143
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 13/149 (8%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +I+ E+ R ++ RPR IK + ARA GDLSEN EY AK L
Sbjct: 7 MTPEGYKQIEDEI-ARLKKGRPRRIKILQAARALGDLSENTEYTEAKRY----------L 55
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ E+++ T ++ G TV L + D + Y+IVG EAD+ G +S SP+
Sbjct: 56 GKQLKYTEIVE--TKDDGKVDLGKTVVLKFDDDEDTEEYKIVGRMEADLADGKISFGSPL 113
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++ KE G +V AP GE I++V
Sbjct: 114 GQAIMKKEAGTTSTVGAPAGEYKVTIVEV 142
>gi|261337288|ref|ZP_05965172.1| transcription elongation factor GreA [Bifidobacterium gallicum DSM
20093]
gi|270277656|gb|EFA23510.1| transcription elongation factor GreA [Bifidobacterium gallicum DSM
20093]
Length = 161
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 7/142 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T DK+Q+EL WRQ E R I + I+ ARA GDLSEN YQAA+E Q NEGR+ EL
Sbjct: 12 LTQDAVDKLQEELTWRQGEYRDEITERIAAARAEGDLSENGGYQAAREEQGKNEGRINEL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124
+ A++I+ + G+ V++ + G + ++G ++ V + + +S S
Sbjct: 72 IVKLRNAKIIEAPEAG--VVGNGSVVTI---DLGGNEMTYVIGSRDIAVATDIDVISPDS 126
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ A++G ++GD +S P G
Sbjct: 127 PVGAAIMGAKVGDTVSYTLPNG 148
>gi|221065450|ref|ZP_03541555.1| transcription elongation factor GreB [Comamonas testosteroni KF-1]
gi|220710473|gb|EED65841.1| transcription elongation factor GreB [Comamonas testosteroni KF-1]
Length = 188
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +I+ EL ERP+I++ + A + GD SEN +Y K+ + R+ L
Sbjct: 31 ITPQGYQRIKDELLDLIDNERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D + +G D++ FGATVS V+ + G ++ I+G EAD VS +P
Sbjct: 91 TKRLEIAEVVDPAVHAGSDQVFFGATVSYVD-DEGVERTITIMGIDEADSAQNQVSWIAP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++RAL+ +GD +++ P G + EIL V +
Sbjct: 150 VSRALLKARVGDEVALPTPAGVRMLEILDVSY 181
>gi|75761030|ref|ZP_00741032.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74491486|gb|EAO54700.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 151
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/116 (39%), Positives = 69/116 (59%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+ +
Sbjct: 25 PMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRITQ 84
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S
Sbjct: 85 LENMIRNAVIIKDNGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRIS 140
>gi|134295030|ref|YP_001118765.1| transcription elongation factor GreB [Burkholderia vietnamiensis
G4]
gi|134138187|gb|ABO53930.1| transcription elongation factor GreB [Burkholderia vietnamiensis
G4]
Length = 187
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S D++ FGATV + G+ IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEDHTVTIVGIDEVDLDRGCVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARALI ++GD +++ P G + ++L V +
Sbjct: 150 IARALIKAKIGDTVTLMTPAGPQPIDVLDVRY 181
>gi|121593370|ref|YP_985266.1| transcription elongation factor GreB [Acidovorax sp. JS42]
gi|120605450|gb|ABM41190.1| transcription elongation factor GreB [Acidovorax sp. JS42]
Length = 186
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ ++++EL +ERP++++ + A + GD SEN +Y K+ + R+ L
Sbjct: 30 ITPQGYARLRRELLDLIDDERPKVVEIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+D S +G D++ FGATV+ E++ G ++ I+G EAD +S SP
Sbjct: 90 TKRLEIADVVDPSVHAGSDQVFFGATVTYAEED-GVERTVTILGIDEADNSLQQISWISP 148
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ARAL+ GD +++ P G +T EIL+V
Sbjct: 149 VARALLKAREGDEVTLQTPAGLRTLEILRV 178
>gi|259502254|ref|ZP_05745156.1| transcription elongation factor GreA 1 [Lactobacillus antri DSM
16041]
gi|259169872|gb|EEW54367.1| transcription elongation factor GreA 1 [Lactobacillus antri DSM
16041]
Length = 168
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 5/150 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T G+ +I+ E+ R Q +RP I+ + ARA GDLSEN EY AK EL++L E R+
Sbjct: 18 MTRAGYQEIEDEI-ARLQAQRPAKIEQLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 75
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + AE+I + + + G +V+L ++ D Y+IVG QEAD+ V+ SP
Sbjct: 76 LNKQLQYAEII--APTNAGTVDLGTSVTLRFEDDDDVATYRIVGKQEADLAKQKVAFDSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ +A++ + G ++V AP I+++
Sbjct: 134 LGQAIMHQRAGTTVTVQAPQAPYQVTIIKI 163
>gi|270308083|ref|YP_003330141.1| transcription elongation factor [Dehalococcoides sp. VS]
gi|270153975|gb|ACZ61813.1| transcription elongation factor [Dehalococcoides sp. VS]
Length = 265
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+KIP+T+ G+ K++ EL + + R +I+ + A D+ ENA Y AAKE + EG
Sbjct: 111 VEKIPMTASGYKKLEDELSTLKGK-RIEVIEEMRLAAMDKDMRENAPYHAAKEQRGQIEG 169
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E+ + AEV + + + ++ G TV L + +G+ Y +V +E + G +S
Sbjct: 170 RIKEIEHELKYAEVSEYTDNNTSKVNMGNTVKLRDLKNGECCTYTLVSPKEIEPLKGKIS 229
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTY 150
SSPI +A+ + G+ I + P G Y
Sbjct: 230 ASSPIGKAVFNRNKGEQIEIEVPSGTLQY 258
>gi|312874044|ref|ZP_07734079.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2052A-d]
gi|329920936|ref|ZP_08277485.1| transcription elongation factor GreA [Lactobacillus iners SPIN
1401G]
gi|311090384|gb|EFQ48793.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2052A-d]
gi|328935501|gb|EGG31972.1| transcription elongation factor GreA [Lactobacillus iners SPIN
1401G]
Length = 153
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ KI+ E+ +++RPR IK + EAR+ GDLSEN+EY AK + R+ L
Sbjct: 7 MTPEGYKKIETEI-AELKKDRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQSRLRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A+++ + + I G+ V + ++ + + Y IVG EADV +S SP+
Sbjct: 66 NKQLQYAQIVQKN--NDGMIDLGSQVEIQFEDEVEIEPYTIVGTLEADVIDNKISFDSPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL+ K+ GD++ VNAP G I+ V
Sbjct: 124 GAALMHKKAGDLVKVNAPAGSYQVRIISV 152
>gi|255523780|ref|ZP_05390745.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
gi|255512483|gb|EET88758.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
Length = 154
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 84/150 (56%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + DK+++EL +R +R +I K A A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTQENIDKLKEELDYRMTVKRAQIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+I+ A V+D + I + + + D++ +V +AD ++ L+S+ S +
Sbjct: 65 LTMISTAIVVDDKSQDKSVIGVNSKFKIKFVDDEDEEVVSLVTTVDADPENMLISVESDL 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+AL+ K+ GDI+ VNAP T EIL++L
Sbjct: 125 GKALMSKKAGDIVEVNAPSENYTVEILEIL 154
>gi|183601464|ref|ZP_02962834.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis HN019]
gi|219683518|ref|YP_002469901.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis AD011]
gi|241191036|ref|YP_002968430.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241196442|ref|YP_002969997.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|183219070|gb|EDT89711.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis HN019]
gi|219621168|gb|ACL29325.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis AD011]
gi|240249428|gb|ACS46368.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240250996|gb|ACS47935.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|295794025|gb|ADG33560.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis V9]
Length = 160
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 91/142 (64%), Gaps = 7/142 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q+ NEGR+ EL
Sbjct: 10 LTQEAYDKMKEELAHREGEYRDEITERIAAARAEGDLSENGGYQAAREEQSKNEGRINEL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSISS 124
+ A++I+ + +G+ + G+ V++ + G++ Y ++G ++ V + ++S S
Sbjct: 70 IVKLRNAKIIE-APKAGE-VGNGSLVTI--ELGGNEMQY-VIGSRDITVATDYDVISPES 124
Query: 125 PIARALIGKELGDIISVNAPGG 146
PI A+IG ++GD+++ AP G
Sbjct: 125 PIGGAIIGHKVGDVVTYKAPNG 146
>gi|315185942|gb|EFU19706.1| transcription elongation factor GreA [Spirochaeta thermophila DSM
6578]
Length = 898
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 81/147 (55%), Gaps = 2/147 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I VT + Q+EL++ + E P+ K IS+A GDL ENAEY+AAKE Q + +
Sbjct: 742 IMVTPAAYAAKQKELKYLHEVEVPKNSKEISQALLLGDLRENAEYKAAKERQEMLNSTIG 801
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+L+ + RA+++ + +I+FG V+L+ + + ++ Y I+G E++ G++S S
Sbjct: 802 KLKEELERAQIVRPDEVDASQISFGTKVTLLNEETKKRETYVILGPWESNPDKGIISYLS 861
Query: 125 PIARALIGKELGDIISVNAPGGEKTYE 151
P L G + G+ + E+TY
Sbjct: 862 PFGSELYGHKEGEELEFTI--NERTYH 886
>gi|313499599|gb|ADR60965.1| GreB [Pseudomonas putida BIRD-1]
Length = 162
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ S ++ FGA V +E + G+ ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDVKVVAYSPEQEGKVFFGAWVE-IENDEGETMKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE GD + V+ P GE T+ +
Sbjct: 125 ARALLKKEEGDEVVVHTPTGEATWYV 150
>gi|171743230|ref|ZP_02919037.1| hypothetical protein BIFDEN_02358 [Bifidobacterium dentium ATCC
27678]
gi|283455792|ref|YP_003360356.1| transcription elongation factor GreA [Bifidobacterium dentium Bd1]
gi|306823073|ref|ZP_07456449.1| possible transcription elongation factor GreA [Bifidobacterium
dentium ATCC 27679]
gi|309801121|ref|ZP_07695250.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Bifidobacterium dentium JCVIHMP022]
gi|171278844|gb|EDT46505.1| hypothetical protein BIFDEN_02358 [Bifidobacterium dentium ATCC
27678]
gi|283102426|gb|ADB09532.1| Transcription elongation factor GreA [Bifidobacterium dentium Bd1]
gi|304553705|gb|EFM41616.1| possible transcription elongation factor GreA [Bifidobacterium
dentium ATCC 27679]
gi|308222010|gb|EFO78293.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Bifidobacterium dentium JCVIHMP022]
Length = 159
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 7/142 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +DK+++EL WR+ E R I+ +S ARA GDLSEN YQAA+E Q +N+GR+ EL
Sbjct: 9 LTQEAYDKMKEELAWREGEYRDEILSKVSAARAEGDLSENGGYQAAREAQRVNQGRIDEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSISS 124
+ A+++ + G+ + G+ V+L E N ++ ++G ++ + + ++S S
Sbjct: 69 TVKLRNAKIL-TAPKEGE-VGDGSVVTL-ELNG--RELVYVLGTRDLSIATDYDIISPES 123
Query: 125 PIARALIGKELGDIISVNAPGG 146
PI A+ G GD +S AP G
Sbjct: 124 PIGAAINGAHAGDTVSYTAPNG 145
>gi|313678570|ref|YP_004056310.1| transcription elongation factor GreA [Mycoplasma bovis PG45]
gi|312950163|gb|ADR24758.1| transcription elongation factor GreA [Mycoplasma bovis PG45]
Length = 163
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 82/143 (57%), Gaps = 1/143 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI ++ + ++K + E ERP + ++ EARA GDLSENAEY AA++ Q+ E R
Sbjct: 7 EKIYLSEETYNKYKNEYTELVTVERPAVQASLKEARAQGDLSENAEYDAARDRQSEVERR 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE I+ AE+ID + ++ GATV + + + I+G +++ +S
Sbjct: 67 ILELERILENAEIIDTKSAVQNKAGIGATVKYLNMKTNKELVVTIMGPHDSNPIENKISN 126
Query: 123 SSPIARALI-GKELGDIISVNAP 144
SP+A+A++ +GD++ V P
Sbjct: 127 ESPVAQAIMEANGIGDVVEVEVP 149
>gi|312795407|ref|YP_004028329.1| transcription elongation factor greB [Burkholderia rhizoxinica HKI
454]
gi|312167182|emb|CBW74185.1| Transcription elongation factor greB [Burkholderia rhizoxinica HKI
454]
Length = 186
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +++ EL ERP +++ +S A + GD SEN +Y K + R+ L
Sbjct: 31 MTPEGYRRLKDELLQLIDVERPEVVRMVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S + D++ FGATV + G + IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDSSRQENTDQVFFGATVHYATSD-GAENQITIVGVDEVDLDRGRVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ +GD + ++ PGG + +IL V +
Sbjct: 150 IARALLKARIGDTVPLHTPGGIEQIDILDVHY 181
>gi|78065582|ref|YP_368351.1| transcription elongation factor GreB [Burkholderia sp. 383]
gi|77966327|gb|ABB07707.1| transcription elongation factor GreB [Burkholderia sp. 383]
Length = 187
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S D++ FGATV E G+ IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQENVDQVFFGATVDY-ETPDGEDHTITIVGIDEVDLDHGCVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALI ++GD + + P G + ++L V +
Sbjct: 150 VARALIKAKIGDTVMLMTPAGPQPIDVLDVRY 181
>gi|26989039|ref|NP_744464.1| transcription elongation factor GreB [Pseudomonas putida KT2440]
gi|37999626|sp|Q88KH5|GREB_PSEPK RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|24983864|gb|AAN67928.1|AE016425_5 transcription elongation factor GreB [Pseudomonas putida KT2440]
Length = 162
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ S ++ FGA V +E + G+ ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDVKVVAYSPEQEGKVFFGAWVE-IENDEGETMKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE GD + V+ P GE T+ +
Sbjct: 125 ARALLKKEEGDEVVVHTPTGEATWYV 150
>gi|302878073|ref|YP_003846637.1| transcription elongation factor GreB [Gallionella capsiferriformans
ES-2]
gi|302580862|gb|ADL54873.1| transcription elongation factor GreB [Gallionella capsiferriformans
ES-2]
Length = 178
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K+Q EL + ERP ++ I+ A + GD SEN +Y K + R+ L
Sbjct: 24 ITPGGHQKLQTELEQLWKVERPVLVNTITWAASNGDRSENGDYIYGKRRLREIDRRVRFL 83
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ +AEV+D + + +++ FGATV+ V G + Y IVG EAD+ G +S SP
Sbjct: 84 HKRLEQAEVVDPAKRGACEQVFFGATVT-VGHEDGSEATYAIVGVDEADLTRGHISWVSP 142
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR L+ GD+ + P G E+L+V ++
Sbjct: 143 LARTLLKLHEGDVARLMTPAGIVELEVLRVCYL 175
>gi|224826318|ref|ZP_03699420.1| transcription elongation factor GreB [Lutiella nitroferrum 2002]
gi|224601419|gb|EEG07600.1| transcription elongation factor GreB [Lutiella nitroferrum 2002]
Length = 185
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +++ EL ERP ++ ++ A + GD SEN +Y K + R+ L
Sbjct: 31 LTPQGWQRLKNELYHLVHRERPEMVNVVNWAASNGDRSENGDYLYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D T + D+I F ATV L+ + G ++ +IVG E D+ G +S SP
Sbjct: 91 TKRLEIAEVVDPETRETTDQIFFSATV-LILRGDGSEQLLRIVGVDEIDLPRGHISWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IAR LI GD + P GE+T E+L+V +
Sbjct: 150 IARCLIKAREGDEVVFRGPDGEETIEVLEVRY 181
>gi|88706726|ref|ZP_01104428.1| Transcription elongation factor greB [Congregibacter litoralis
KT71]
gi|88699047|gb|EAQ96164.1| Transcription elongation factor greB [Congregibacter litoralis
KT71]
Length = 185
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 5/154 (3%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T+ G +++ EL WRQ ERP + A+ +A GD SEN +Y K+ + R+
Sbjct: 15 ITAAGEARLRAELDRLWRQ--ERPVVALAVQDAAKNGDRSENGDYIYGKKRLREIDSRVR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ + +V+ RI FGATV VE + +I+G E + G VSI +
Sbjct: 73 FISKRLEVLQVVREPPTDRTRIFFGATVE-VEDQHAVSRTIRILGPDEFESSRGEVSIDA 131
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
PIARAL+GK +GD +++ +PGG + E+L V ++
Sbjct: 132 PIARALLGKSVGDCVNLESPGGLRELEVLAVSYL 165
>gi|15895695|ref|NP_349044.1| transcription elongation factor, greA [Clostridium acetobutylicum
ATCC 824]
gi|15025446|gb|AAK80384.1|AE007743_6 Transcription elongation factor, greA [Clostridium acetobutylicum
ATCC 824]
gi|325509845|gb|ADZ21481.1| Transcription elongation factor, greA [Clostridium acetobutylicum
EA 2018]
Length = 154
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T G K+++EL + + +R I +A+ AR+ GDLSENA+Y AAK+ Q++NE
Sbjct: 1 MSSKI-LTESGKKKLEEELEYLKTVKRAEIKEALKFARSQGDLSENADYSAAKDDQSMNE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+I+ V++ S+ + + + ++ + + +V E+D+++ V
Sbjct: 60 TRIQEIEDILKSCTVVE-SSENENVFDLNKKALVKFCDTDETEEVTLVSSVESDIKNMKV 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SI SP+ +AL EL V +P G E+L++L
Sbjct: 119 SIDSPLGKALYKSELNKRTLVQSPDGSYEVEVLKIL 154
>gi|330993418|ref|ZP_08317353.1| Transcription elongation factor greB [Gluconacetobacter sp. SXCC-1]
gi|329759448|gb|EGG75957.1| Transcription elongation factor greB [Gluconacetobacter sp. SXCC-1]
Length = 178
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G ++ EL ++ERP+I++ +S A GD SEN +YQ K + R+ L
Sbjct: 24 VTPAGIAVMRAELNALLRDERPKIVEIVSWAAGNGDRSENGDYQYGKRRLREIDRRIRFL 83
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I A V+D + R+ FGATV+ V + +++ I+G EAD+ +G +S+ SP
Sbjct: 84 TKRIDNAVVVDPAAQPQRGRVFFGATVTYVTERD-EERTVTILGVDEADMAAGQISLVSP 142
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ +GD + + P GE+ E+L + +
Sbjct: 143 VARALMRAAVGDEVRLATPRGEEMIEVLAISY 174
>gi|114328469|ref|YP_745626.1| transcription elongation factor greB [Granulibacter bethesdensis
CGDNIH1]
gi|114316643|gb|ABI62703.1| transcription elongation factor greB [Granulibacter bethesdensis
CGDNIH1]
Length = 169
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 85/151 (56%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL+ +EERP+I++ +S A GD SEN +Y K+ + R+ L
Sbjct: 15 MTPVGHAQMVAELKQLMREERPKIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRFL 74
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGLVSISS 124
+ A VID +T DRI FGATV+ + N+ D+ IVG EAD+ G +S+ S
Sbjct: 75 TKRLENAVVIDPATQPHKDRIYFGATVTYI--NAADETVQVTIVGADEADMALGRISLLS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+A+AL+G GD ++V P + +IL V
Sbjct: 133 PVAKALLGASKGDEVTVITPVKTEILDILDV 163
>gi|161525566|ref|YP_001580578.1| transcription elongation factor GreB [Burkholderia multivorans ATCC
17616]
gi|189349706|ref|YP_001945334.1| transcription elongation factor GreB [Burkholderia multivorans ATCC
17616]
gi|221201206|ref|ZP_03574246.1| transcription elongation factor GreB [Burkholderia multivorans
CGD2M]
gi|221206340|ref|ZP_03579353.1| transcription elongation factor GreB [Burkholderia multivorans
CGD2]
gi|221213620|ref|ZP_03586594.1| transcription elongation factor GreB [Burkholderia multivorans
CGD1]
gi|160342995|gb|ABX16081.1| transcription elongation factor GreB [Burkholderia multivorans ATCC
17616]
gi|189333728|dbj|BAG42798.1| transcription elongation factor [Burkholderia multivorans ATCC
17616]
gi|221166409|gb|EED98881.1| transcription elongation factor GreB [Burkholderia multivorans
CGD1]
gi|221173649|gb|EEE06083.1| transcription elongation factor GreB [Burkholderia multivorans
CGD2]
gi|221179056|gb|EEE11463.1| transcription elongation factor GreB [Burkholderia multivorans
CGD2M]
Length = 187
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLKDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S D++ FGATV + G++ IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEEHTITIVGIDEVDLDRGCVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALI +GD +++ P G + ++L V +
Sbjct: 150 VARALIKARIGDTVTLMTPAGPQPIDVLDVRY 181
>gi|299529934|ref|ZP_07043362.1| Kelongation factor GreB [Comamonas testosteroni S44]
gi|298722106|gb|EFI63035.1| Kelongation factor GreB [Comamonas testosteroni S44]
Length = 188
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +I+ EL ERP+I++ + A + GD SEN +Y K+ + R+ L
Sbjct: 31 ITPQGYQRIKDELLDLIDNERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D +G D++ FGATVS V+ + G ++ I+G EAD VS +P
Sbjct: 91 TKRLEIAEVVDPGVHAGSDQVFFGATVSYVD-DEGVERTITIMGIDEADSAQNQVSWIAP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++RAL+ +GD +++ P G + EIL V +
Sbjct: 150 VSRALLKARVGDEVALPTPAGVRMLEILDVSY 181
>gi|309809127|ref|ZP_07703000.1| transcription elongation factor GreA [Lactobacillus iners SPIN
2503V10-D]
gi|308170572|gb|EFO72592.1| transcription elongation factor GreA [Lactobacillus iners SPIN
2503V10-D]
Length = 153
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ KI+ E+ +++RPR IK + EAR+ GDLSEN+EY AK + R+ L
Sbjct: 7 MTPEGYKKIETEI-AELKKDRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQSRLRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A+++ + I G+ V + ++ + + Y IVG EADV +S SP+
Sbjct: 66 NKQLQYAQIV--QKNNDGVIDLGSQVEIQFEDEEEIEPYTIVGTLEADVIDNKISFDSPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL+ K+ GD++ VNAP G I+ V
Sbjct: 124 GAALMHKKAGDLVKVNAPAGSYQVRIISV 152
>gi|196231612|ref|ZP_03130470.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
gi|196224465|gb|EDY18977.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
Length = 609
Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 70/125 (56%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P +K I AR+YGDL EN E++AAKE+Q + R AE E + +A D + +++
Sbjct: 477 PENVKEIQVARSYGDLRENFEFKAAKEMQRVLSRRRAETERDLAQARGTDFANPDTAQVS 536
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
G V+L E G Y I+G + D G+VS S +A+ALIG + G+ ++V G+
Sbjct: 537 VGTIVTLKETGDGRTDVYTILGAWDGDPDKGIVSYQSALAQALIGHKPGEQVNVPTEHGD 596
Query: 148 KTYEI 152
+T I
Sbjct: 597 RTARI 601
>gi|227545317|ref|ZP_03975366.1| transcription elongation factor [Lactobacillus reuteri CF48-3A]
gi|300908606|ref|ZP_07126069.1| transcription elongation factor [Lactobacillus reuteri SD2112]
gi|227184713|gb|EEI64784.1| transcription elongation factor [Lactobacillus reuteri CF48-3A]
gi|300894013|gb|EFK87371.1| transcription elongation factor [Lactobacillus reuteri SD2112]
Length = 192
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 7/151 (4%)
Query: 7 VTSKGFDKIQQEL-RWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMA 64
+T+ G+ +I++++ + +QQ RP I + ARA GDLSEN EY AK EL++L E R+
Sbjct: 45 MTANGYHEIEEQIAKLKQQ--RPAKIGQLKAARALGDLSENTEYSTAKRELRHL-ESRLR 101
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + AE++ + + I G TV + ++ +++ Y IVG QEAD+ +S S
Sbjct: 102 YLNKQLQYAEIV--TPKNDHTIDLGTTVIIEFEDDHEQETYHIVGKQEADLAKQKISFDS 159
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ +AL+ K G ++V AP +I+++
Sbjct: 160 PLGQALLHKTAGITVTVEAPQSSYKVKIVKI 190
>gi|148377651|ref|YP_001256527.1| transcription elongation factor greA [Mycoplasma agalactiae PG2]
gi|291320341|ref|YP_003515603.1| transcription elongation factor greA [Mycoplasma agalactiae]
gi|259647749|sp|A5IYH4|GREA_MYCAP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|148291697|emb|CAL59083.1| Transcription elongation factor greA [Mycoplasma agalactiae PG2]
gi|290752674|emb|CBH40647.1| Transcription elongation factor greA [Mycoplasma agalactiae]
Length = 163
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 82/143 (57%), Gaps = 1/143 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI ++ + ++K + E ERP + ++ EARA GDLSENAEY AA++ Q+ E R
Sbjct: 7 EKIYLSEETYNKYKNEYTELVTVERPAVQASLKEARAQGDLSENAEYDAARDRQSEVERR 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE I+ AE+ID + ++ GATV + + + I+G +++ +S
Sbjct: 67 ILELERILENAEIIDTKSAVQNKAGIGATVRYLNMKTNKELVVTIMGPHDSNPIENKISN 126
Query: 123 SSPIARALI-GKELGDIISVNAP 144
SP+A+A++ +GD++ V P
Sbjct: 127 ESPVAQAIMEANGIGDVVEVEVP 149
>gi|152002511|dbj|BAF73535.1| transcription elongation factor [Onion yellows phytoplasma OY-W]
Length = 156
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 86/147 (58%), Gaps = 3/147 (2%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +KI +T G K+++EL + ++ +R ++A+ E R GDLSENA+Y AA+ Q L
Sbjct: 1 MNNKIYELTQSGIKKLKKELTFLKEVKRKENLEALKEEREQGDLSENADYDAARNEQTLI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD +
Sbjct: 61 EHRISEIQNILKNVRVVKVSKER--EVSIGKKVSLELLHTKQQQEIELVSTLEADPFANK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146
+SI SP+ + + G ++GD++ V G
Sbjct: 119 ISIESPLGQNIKGHQIGDVVFVTGETG 145
>gi|332528408|ref|ZP_08404400.1| transcription elongation factor [Hylemonella gracilis ATCC 19624]
gi|332042087|gb|EGI78421.1| transcription elongation factor [Hylemonella gracilis ATCC 19624]
Length = 185
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL EERP++++ + A + GD SEN +Y K+ + R+ L
Sbjct: 30 ITPAGYARLRAELMQLIDEERPKVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV D S G D++ FGATV+ + +G ++ I+G EAD G VS SP
Sbjct: 90 TKRLEIAEVADPSVHHGSDQVFFGATVTYAD-GAGVERTITILGIDEADNLRGQVSWISP 148
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+AR L+ +GD++ + P G + E+L+V +
Sbjct: 149 VARTLLKARVGDVLKLVTPAGVEEIEVLEVSY 180
>gi|289178779|gb|ADC86025.1| GreA [Bifidobacterium animalis subsp. lactis BB-12]
Length = 203
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 91/142 (64%), Gaps = 7/142 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q+ NEGR+ EL
Sbjct: 53 LTQEAYDKMKEELAHREGEYRDEITERIAAARAEGDLSENGGYQAAREEQSKNEGRINEL 112
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSISS 124
+ A++I+ + +G+ + G+ V++ + G++ Y ++G ++ V + ++S S
Sbjct: 113 IVKLRNAKIIE-APKAGE-VGNGSLVTI--ELGGNEMQY-VIGSRDITVATDYDVISPES 167
Query: 125 PIARALIGKELGDIISVNAPGG 146
PI A+IG ++GD+++ AP G
Sbjct: 168 PIGGAIIGHKVGDVVTYKAPNG 189
>gi|21231994|ref|NP_637911.1| transcription elongation factor GreB [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66767879|ref|YP_242641.1| transcription elongation factor GreB [Xanthomonas campestris pv.
campestris str. 8004]
gi|25452985|sp|Q8P7P8|GREB_XANCP RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|21113729|gb|AAM41835.1| transcription elongation factor and transcript cleavage
[Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|66573211|gb|AAY48621.1| transcription elongation factor and transcript cleavage
[Xanthomonas campestris pv. campestris str. 8004]
Length = 168
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 82/151 (54%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+
Sbjct: 15 ITPEGHARLKAELDELWRLR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+D + + FGA V L + +SG+ Y+IVG E D G +SI S
Sbjct: 73 YLSKRLEALRVVDTAPTDPQAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ K + D P G+ T+ ++ V
Sbjct: 133 PLARALLKKRVDDEFEAQLPSGKHTFVVVVV 163
>gi|325283061|ref|YP_004255602.1| transcription elongation factor GreA [Deinococcus proteolyticus
MRP]
gi|324314870|gb|ADY25985.1| transcription elongation factor GreA [Deinococcus proteolyticus
MRP]
Length = 155
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 6/155 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
KI +T +G+D++++ L + R +I + + A GDL E+A Y A+ Q+ NE R+
Sbjct: 5 KISITQRGYDRLKETLHHLKTTRREQISENMGRAIEDGDLRESAAYDEARMEQSENEARI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD-KKNYQIVGDQEADVQSGLVSI 122
+LE+ + RA +++ D + V+ SG ++ +++VG EADV++G VS
Sbjct: 65 RDLEDQLERAVIVE-----EDAGGGAGLGAKVKVRSGKTERTFELVGTFEADVRAGKVSD 119
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SPI +AL+G G + V P G+ +E+L+V +
Sbjct: 120 ASPIGQALLGAREGAKVKVPGPKGDMEFEVLEVTY 154
>gi|259500870|ref|ZP_05743772.1| transcription elongation factor GreA [Lactobacillus iners DSM
13335]
gi|302190677|ref|ZP_07266931.1| transcription elongation factor GreA [Lactobacillus iners AB-1]
gi|309803670|ref|ZP_07697760.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners LactinV 11V1-d]
gi|309805761|ref|ZP_07699798.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners LactinV 09V1-c]
gi|312874748|ref|ZP_07734767.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners LEAF 2053A-b]
gi|315654050|ref|ZP_07906966.1| transcription elongation factor GreA [Lactobacillus iners ATCC
55195]
gi|325912329|ref|ZP_08174726.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners UPII 143-D]
gi|259167564|gb|EEW52059.1| transcription elongation factor GreA [Lactobacillus iners DSM
13335]
gi|308164268|gb|EFO66525.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners LactinV 11V1-d]
gi|308164881|gb|EFO67127.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners LactinV 09V1-c]
gi|311089493|gb|EFQ47918.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners LEAF 2053A-b]
gi|315488746|gb|EFU78392.1| transcription elongation factor GreA [Lactobacillus iners ATCC
55195]
gi|325475988|gb|EGC79157.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners UPII 143-D]
Length = 153
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ KI+ E+ +++RPR IK + EAR+ GDLSEN+EY AK + R+ L
Sbjct: 7 MTPEGYKKIETEI-AELKKDRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQSRLRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A+++ + + I G+ V + ++ + + Y IVG EADV +S SP+
Sbjct: 66 NKQLQYAQIVQKN--NDGVIDLGSQVEIQFEDEVEIEPYTIVGTLEADVIDNKISFDSPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL+ K+ GD++ VNAP G I+ V
Sbjct: 124 GAALMHKKAGDLVKVNAPAGSYQVRIISV 152
>gi|182415840|ref|YP_001820906.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
gi|177843054|gb|ACB77306.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
Length = 616
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 77/149 (51%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
V+ +++ ++E ++ P KAI+ AR +GDL EN+EY+ AK+ Q + L
Sbjct: 460 VSKASYERKREEYETIVSKKIPENSKAIAAAREHGDLRENSEYKMAKQEQQVLMAHKTNL 519
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + RA + D S D+++ G V + G Y ++G + D + +S +P
Sbjct: 520 ERDLGRARISDFKDASIDQVSVGTVVEVASVKDGHHTTYTVLGAWDGDPEKHFISYKTPF 579
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL+GK+ GD+I+V ++ Y I+ +
Sbjct: 580 GAALLGKKTGDVINVKTDASDEDYAIVSI 608
>gi|186475439|ref|YP_001856909.1| transcription elongation factor GreB [Burkholderia phymatum STM815]
gi|184191898|gb|ACC69863.1| transcription elongation factor GreB [Burkholderia phymatum STM815]
Length = 190
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL E RP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 32 ITPAGYRRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I AEV++ S + D++ FGATV ++ G+ +IVG E ++ G VS SP
Sbjct: 92 TKRIDLAEVVNSSRQENTDQVFFGATVDYATED-GETHTVRIVGIDEVNLDEGHVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ ++GD ++++ P G + ++L V +
Sbjct: 151 IARALLKAKVGDQVTLHTPAGPQPIDVLDVRY 182
>gi|194289080|ref|YP_002004987.1| transcription elongation factor greb [Cupriavidus taiwanensis LMG
19424]
gi|193222915|emb|CAQ68920.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIPT CLEAVAGE FACTOR)
[Cupriavidus taiwanensis LMG 19424]
Length = 187
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 32 ITAEGYARLRNELMQLIDVERPDVVQIVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ +AEV+D S D+I FGATV+ SG++ IVG E D+ VS SP
Sbjct: 92 TRRLDKAEVVDPSLQGDNDQIFFGATVTYAHA-SGEETTITIVGMDEVDLDHNHVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+AL+ GD +++ P G + +IL+V +
Sbjct: 151 IAKALLKAREGDTVALRTPAGVEQIDILEVRY 182
>gi|76810661|ref|YP_334421.1| transcription elongation factor GreB [Burkholderia pseudomallei
1710b]
gi|134280310|ref|ZP_01767021.1| transcription elongation factor GreB [Burkholderia pseudomallei
305]
gi|167739719|ref|ZP_02412493.1| transcription elongation factor GreB [Burkholderia pseudomallei 14]
gi|167825326|ref|ZP_02456797.1| transcription elongation factor GreB [Burkholderia pseudomallei 9]
gi|167903804|ref|ZP_02491009.1| transcription elongation factor GreB [Burkholderia pseudomallei
NCTC 13177]
gi|217421177|ref|ZP_03452682.1| transcription elongation factor GreB [Burkholderia pseudomallei
576]
gi|226193760|ref|ZP_03789362.1| transcription elongation factor GreB [Burkholderia pseudomallei
Pakistan 9]
gi|237813377|ref|YP_002897828.1| transcription elongation factor GreB [Burkholderia pseudomallei
MSHR346]
gi|254258154|ref|ZP_04949208.1| transcription elongation factor GreB [Burkholderia pseudomallei
1710a]
gi|76580114|gb|ABA49589.1| transcription elongation factor GreB [Burkholderia pseudomallei
1710b]
gi|134248317|gb|EBA48400.1| transcription elongation factor GreB [Burkholderia pseudomallei
305]
gi|217396589|gb|EEC36606.1| transcription elongation factor GreB [Burkholderia pseudomallei
576]
gi|225934065|gb|EEH30050.1| transcription elongation factor GreB [Burkholderia pseudomallei
Pakistan 9]
gi|237504521|gb|ACQ96839.1| transcription elongation factor GreB [Burkholderia pseudomallei
MSHR346]
gi|254216843|gb|EET06227.1| transcription elongation factor GreB [Burkholderia pseudomallei
1710a]
Length = 187
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLHLIDEARPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S + D++ FGATV ++ G++ IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GNEHTVTIVGVDEVDLDRGHVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ +GD +++ P G + ++L V +
Sbjct: 150 VARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181
>gi|116513443|ref|YP_812349.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|116092758|gb|ABJ57911.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|325125081|gb|ADY84411.1| Transcriptional elongation factor [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 153
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 5/156 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
MV +T +G+ +I+ E+ + + RPR ++ + EARA GDLSEN EY AK EL++L+
Sbjct: 1 MVYYQKMTPEGYKQIEDEIAALKAD-RPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G
Sbjct: 60 -SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGK 116
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ SP+ AL+ + GD ++V AP G+ IL V
Sbjct: 117 LPFDSPLGHALMKHKAGDRVTVKAPMGDYEVTILSV 152
>gi|261823310|ref|YP_003261416.1| transcription elongation factor GreB [Pectobacterium wasabiae
WPP163]
gi|261607323|gb|ACX89809.1| transcription elongation factor GreB [Pectobacterium wasabiae
WPP163]
Length = 159
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK++ E +RP I K +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYDKLRAEHEHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISSP 125
+T +++D S + FGA V +E GD K +IVG E S +SI SP
Sbjct: 66 RKCLTELKIVDYSPQQDGSVFFGAWVE-IENEQGDVKRLRIVGPDEIYGDSKDYISIDSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARA++ K + + +VN P G + + +
Sbjct: 125 MARAMLKKAVDEEFTVNTPDGPREWFV 151
>gi|328955979|ref|YP_004373312.1| transcription elongation factor GreA [Coriobacterium glomerans PW2]
gi|328456303|gb|AEB07497.1| transcription elongation factor GreA [Coriobacterium glomerans PW2]
Length = 157
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 3/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++I +T +G K+ EL WR+ I++ I AR +GDLSEN+EY AK+ Q N R
Sbjct: 4 NEIVLTPEGRQKLVDELDWRETTLSKEIVERIKIARDFGDLSENSEYDDAKDEQAKNAAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E++ I+ A+ + +T ++ G++VSLV+ + G + +VG E + +S
Sbjct: 64 IVEIQAILANAQEVK-ATGHSLTVSIGSSVSLVDAD-GVATDVSLVGTTETNSLEHKISN 121
Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155
SP+ A+IG+ G+ + V P G + Y I +V
Sbjct: 122 ESPVGHAIIGRAEGETVEVTMPSGTVRAYTITKV 155
>gi|53720171|ref|YP_109157.1| transcription elongation factor GreB [Burkholderia pseudomallei
K96243]
gi|53726019|ref|YP_103667.1| transcription elongation factor GreB [Burkholderia mallei ATCC
23344]
gi|67643934|ref|ZP_00442677.1| transcription elongation factor GreB [Burkholderia mallei GB8 horse
4]
gi|121600632|ref|YP_992161.1| transcription elongation factor GreB [Burkholderia mallei SAVP1]
gi|124385438|ref|YP_001028606.1| transcription elongation factor GreB [Burkholderia mallei NCTC
10229]
gi|126440515|ref|YP_001059961.1| transcription elongation factor GreB [Burkholderia pseudomallei
668]
gi|126450620|ref|YP_001081495.1| transcription elongation factor GreB [Burkholderia mallei NCTC
10247]
gi|126454976|ref|YP_001067253.1| transcription elongation factor GreB [Burkholderia pseudomallei
1106a]
gi|166998289|ref|ZP_02264149.1| transcription elongation factor GreB [Burkholderia mallei PRL-20]
gi|167720736|ref|ZP_02403972.1| transcription elongation factor GreB [Burkholderia pseudomallei
DM98]
gi|167816923|ref|ZP_02448603.1| transcription elongation factor GreB [Burkholderia pseudomallei 91]
gi|167846828|ref|ZP_02472336.1| transcription elongation factor GreB [Burkholderia pseudomallei
B7210]
gi|167912070|ref|ZP_02499161.1| transcription elongation factor GreB [Burkholderia pseudomallei
112]
gi|167920044|ref|ZP_02507135.1| transcription elongation factor GreB [Burkholderia pseudomallei
BCC215]
gi|242316946|ref|ZP_04815962.1| transcription elongation factor GreB [Burkholderia pseudomallei
1106b]
gi|254175421|ref|ZP_04882081.1| transcription elongation factor GreB [Burkholderia mallei ATCC
10399]
gi|254191879|ref|ZP_04898382.1| transcription elongation factor GreB [Burkholderia pseudomallei
Pasteur 52237]
gi|254196029|ref|ZP_04902454.1| transcription elongation factor GreB [Burkholderia pseudomallei
S13]
gi|254202365|ref|ZP_04908728.1| transcription elongation factor GreB [Burkholderia mallei FMH]
gi|254207699|ref|ZP_04914049.1| transcription elongation factor GreB [Burkholderia mallei JHU]
gi|254298847|ref|ZP_04966297.1| transcription elongation factor GreB [Burkholderia pseudomallei
406e]
gi|254356401|ref|ZP_04972677.1| transcription elongation factor GreB [Burkholderia mallei
2002721280]
gi|52210585|emb|CAH36568.1| transcription elongation factor [Burkholderia pseudomallei K96243]
gi|52429442|gb|AAU50035.1| transcription elongation factor GreB [Burkholderia mallei ATCC
23344]
gi|121229442|gb|ABM51960.1| transcription elongation factor GreB [Burkholderia mallei SAVP1]
gi|124293458|gb|ABN02727.1| transcription elongation factor GreB [Burkholderia mallei NCTC
10229]
gi|126220008|gb|ABN83514.1| transcription elongation factor GreB [Burkholderia pseudomallei
668]
gi|126228618|gb|ABN92158.1| transcription elongation factor GreB [Burkholderia pseudomallei
1106a]
gi|126243490|gb|ABO06583.1| transcription elongation factor GreB [Burkholderia mallei NCTC
10247]
gi|147746612|gb|EDK53689.1| transcription elongation factor GreB [Burkholderia mallei FMH]
gi|147751593|gb|EDK58660.1| transcription elongation factor GreB [Burkholderia mallei JHU]
gi|148025398|gb|EDK83552.1| transcription elongation factor GreB [Burkholderia mallei
2002721280]
gi|157809034|gb|EDO86204.1| transcription elongation factor GreB [Burkholderia pseudomallei
406e]
gi|157939550|gb|EDO95220.1| transcription elongation factor GreB [Burkholderia pseudomallei
Pasteur 52237]
gi|160696465|gb|EDP86435.1| transcription elongation factor GreB [Burkholderia mallei ATCC
10399]
gi|169652773|gb|EDS85466.1| transcription elongation factor GreB [Burkholderia pseudomallei
S13]
gi|238525403|gb|EEP88831.1| transcription elongation factor GreB [Burkholderia mallei GB8 horse
4]
gi|242140185|gb|EES26587.1| transcription elongation factor GreB [Burkholderia pseudomallei
1106b]
gi|243065364|gb|EES47550.1| transcription elongation factor GreB [Burkholderia mallei PRL-20]
Length = 187
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLHLIDEARPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S + D++ FGATV ++ G++ IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GNEHTVTIVGVDEVDLDRGHVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ +GD +++ P G + ++L V +
Sbjct: 150 VARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181
>gi|300812144|ref|ZP_07092589.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496872|gb|EFK31949.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|325684830|gb|EGD26979.1| transcription elongation factor GreA 1 [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 153
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 5/156 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
MV +T +G+ +I+ E+ + + RPR ++ + EARA GDLSEN EY AK EL++L+
Sbjct: 1 MVYYQKMTPEGYKQIEDEIAALKAD-RPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G
Sbjct: 60 -SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGK 116
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ SP+ AL+ + GD ++V AP G+ IL V
Sbjct: 117 LPFDSPLGHALMKHKAGDRVTVEAPMGDYEVTILSV 152
>gi|167895419|ref|ZP_02482821.1| transcription elongation factor GreB [Burkholderia pseudomallei
7894]
gi|254181033|ref|ZP_04887631.1| transcription elongation factor GreB [Burkholderia pseudomallei
1655]
gi|184211572|gb|EDU08615.1| transcription elongation factor GreB [Burkholderia pseudomallei
1655]
Length = 186
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 30 ITPAGHKRLRDELLHLIDEARPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 89
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S + D++ FGATV ++ G++ IVG E D+ G VS SP
Sbjct: 90 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GNEHTVTIVGVDEVDLDRGHVSWISP 148
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ +GD +++ P G + ++L V +
Sbjct: 149 VARALLKARVGDTVTLLTPVGPEPIDVLDVRY 180
>gi|289806266|ref|ZP_06536895.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 79
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 56/74 (75%)
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGKE D++ + P
Sbjct: 6 RVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVIKTP 65
Query: 145 GGEKTYEILQVLWI 158
GG+ YE+L+V ++
Sbjct: 66 GGDVEYEVLKVEYL 79
>gi|313123017|ref|YP_004033276.1| transcription elongation factor grea [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312279580|gb|ADQ60299.1| Transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 153
Score = 80.5 bits (197), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 5/156 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
MV +T +G+ +I+ E+ + + RPR ++ + EARA GDLSEN EY AK EL++L+
Sbjct: 1 MVYYQKMTPEGYKQIEDEIAVLKAD-RPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G
Sbjct: 60 -SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGK 116
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ SP+ AL+ + GD ++V AP G+ IL V
Sbjct: 117 LPFDSPLGHALMKHKAGDRVTVEAPMGDYEVTILSV 152
>gi|325524704|gb|EGD02693.1| transcription elongation factor GreB [Burkholderia sp. TJI49]
Length = 187
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S D++ FGATV + G+ IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEDHTITIVGIDEVDLDRGCVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALI +GD +++ P G + ++L V +
Sbjct: 150 VARALIKARIGDTVTLMTPAGPQPIDVLDVRY 181
>gi|308066908|ref|YP_003868513.1| transcription elongation factor greA (transcript cleavage factor
greA) [Paenibacillus polymyxa E681]
gi|310639545|ref|YP_003944303.1| transcription elongation factor [Paenibacillus polymyxa SC2]
gi|305856187|gb|ADM67975.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Paenibacillus polymyxa E681]
gi|309244495|gb|ADO54062.1| Transcription elongation factor [Paenibacillus polymyxa SC2]
Length = 158
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T +G K++ EL + +R + + I A YGD+SEN+EY+ AK Q
Sbjct: 1 MSDKEVILTQEGLRKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I+ + D + GATV++ + GD Y IVG E+D
Sbjct: 61 EGRVITLEKMLRNARIINSDEIDTDVVGVGATVTVEDLEFGDITEYAIVGSAESDPLQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +A++GK+ G ++ V P G Y+I+ +
Sbjct: 121 ISNESPVGKAILGKKKGTVVDVTVPAGVIQYKIVDI 156
>gi|291548409|emb|CBL21517.1| Transcription elongation factor [Ruminococcus sp. SR1/5]
Length = 166
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 81/148 (54%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K +KI+QE+ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTRKDVEKIEQEIEHRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A ++ ++ S D + V ++ + + + Y++V + +SI SPI
Sbjct: 65 ERMLKTASIVSDASRS-DEVGMDDIVEVLFEEDNEVEKYKLVTSIRGNSMENRISIESPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+AL G +GD + V Y +++
Sbjct: 124 GKALRGHRVGDRVEVKVNDDYSYYLVIK 151
>gi|184156278|ref|YP_001844618.1| transcription elongation factor GreA [Lactobacillus fermentum IFO
3956]
gi|183227622|dbj|BAG28138.1| elongation factor GreA [Lactobacillus fermentum IFO 3956]
Length = 160
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 10/154 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T G+ I++++ +Q+ RP +I + ARA GDLSEN EY AK EL++L E R+
Sbjct: 9 MTPAGYRAIEEQIEALKQK-RPTLITRLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL----VS 121
L+ +T A+VID+S ++A G V++ + ++ YQIVG +A+ Q+ L ++
Sbjct: 67 LDKQLTYAKVIDVS--DDGKVALGKVVTIRFLDDQEEATYQIVGRHQAE-QASLTEEVLA 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ AL G G ++V+AP I+ V
Sbjct: 124 FDSPLGLALKGHTAGTTVTVHAPAASYQVTIITV 157
>gi|227514075|ref|ZP_03944124.1| transcription elongation factor [Lactobacillus fermentum ATCC
14931]
gi|260662496|ref|ZP_05863391.1| elongation factor GreA [Lactobacillus fermentum 28-3-CHN]
gi|227087556|gb|EEI22868.1| transcription elongation factor [Lactobacillus fermentum ATCC
14931]
gi|260553187|gb|EEX26130.1| elongation factor GreA [Lactobacillus fermentum 28-3-CHN]
Length = 160
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 10/154 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T G+ I++++ +Q+ RP +I + ARA GDLSEN EY AK EL++L E R+
Sbjct: 9 MTPAGYRAIEEQIEALKQK-RPTLITRLKAARALGDLSENTEYSTAKRELRHL-ESRLRY 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL----VS 121
L+ +T A+VID+S ++A G V++ + ++ YQIVG +A+ Q+ L ++
Sbjct: 67 LDKQLTYAKVIDVS--DDGKVALGKVVTIRFLDDQEEATYQIVGRHQAE-QASLTEEVLA 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ AL G G ++V+AP I+ V
Sbjct: 124 FDSPLGLALKGHTAGTTVTVHAPAASYQVTIITV 157
>gi|168830125|gb|ACA34353.1| transcription elongation factor [Paenibacillus polymyxa]
Length = 165
Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T +G K++ EL + +R + + I A YGD+SEN+EY+ AK Q
Sbjct: 8 MSDKEVILTQEGLRKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 67
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I+ + D + GATV++ + GD Y IVG E+D
Sbjct: 68 EGRVITLEKMLRNARIINSDEIDTDVVGVGATVTVEDLEFGDITEYAIVGSAESDPLQNK 127
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +A++GK+ G ++ V P G Y+I+ +
Sbjct: 128 ISNESPVGKAILGKKKGTVVDVTVPAGVIQYKIVDI 163
>gi|309805958|ref|ZP_07699985.1| transcription elongation factor GreA [Lactobacillus iners LactinV
03V1-b]
gi|309808528|ref|ZP_07702427.1| transcription elongation factor GreA [Lactobacillus iners LactinV
01V1-a]
gi|312871258|ref|ZP_07731356.1| transcription elongation factor GreA [Lactobacillus iners LEAF
3008A-a]
gi|312872694|ref|ZP_07732759.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2062A-h1]
gi|325912492|ref|ZP_08174882.1| transcription elongation factor GreA [Lactobacillus iners UPII
60-B]
gi|308167640|gb|EFO69792.1| transcription elongation factor GreA [Lactobacillus iners LactinV
03V1-b]
gi|308168356|gb|EFO70475.1| transcription elongation factor GreA [Lactobacillus iners LactinV
01V1-a]
gi|311091736|gb|EFQ50115.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2062A-h1]
gi|311093272|gb|EFQ51618.1| transcription elongation factor GreA [Lactobacillus iners LEAF
3008A-a]
gi|325478165|gb|EGC81287.1| transcription elongation factor GreA [Lactobacillus iners UPII
60-B]
Length = 153
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ KI+ E+ +++RPR IK + EAR+ GDLSEN+EY AK + R+ L
Sbjct: 7 MTPEGYKKIETEI-AELKKDRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQSRLRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A+++ + + + G+ V + ++ + + Y IVG EADV +S SP+
Sbjct: 66 NKQLQYAQIVQKN--NDGVVDLGSQVEIQFEDEEEIEPYTIVGTLEADVIDNKISFDSPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL+ K+ GD++ VNAP G I+ V
Sbjct: 124 GAALMHKKAGDLVKVNAPAGSYQVRIISV 152
>gi|167586480|ref|ZP_02378868.1| transcription elongation factor GreB [Burkholderia ubonensis Bu]
Length = 187
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL ERP +++ +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLNLIDAERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S + D++ FGATV + G++ IVG E D+ G VS SP
Sbjct: 91 TKRLDIAEVVDASRQENTDQVFFGATVDYATPD-GEEHTITIVGIDEVDLDHGHVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ ++GD +++ P G + ++L V +
Sbjct: 150 VARALLKAKIGDTVTLMTPAGPQPIDVLDVHY 181
>gi|285017768|ref|YP_003375479.1| transcription elongation factor greb (transcript cleavage factor
greb) protein [Xanthomonas albilineans GPE PC73]
gi|283472986|emb|CBA15491.1| probable transcription elongation factor greb (transcript cleavage
factor greb) protein [Xanthomonas albilineans]
Length = 168
Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 4/151 (2%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T +G +++ EL WR + RP +++A++ A A GD SENAEY K+ + R+
Sbjct: 15 ITPEGHARLKAELDDLWRLR--RPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + V+ + + FGA ++L + +SG+ + Y+IVG E D G +SI S
Sbjct: 73 YLSKRLEALRVVADAPSDPQAVFFGARIALEDVDSGELRRYRIVGPDETDAARGWISIDS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+ K + D + PGG ++ ++ V
Sbjct: 133 PLARALLKKRIDDEVEAQLPGGRHSFVVVAV 163
>gi|295677338|ref|YP_003605862.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
gi|295437181|gb|ADG16351.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
Length = 189
Score = 80.1 bits (196), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL ERP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 32 MTPAGHRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S D++ FGATV ++ G++ IVG E D+ G VS SP
Sbjct: 92 TKRLDLAEVVDSSRQENVDQVFFGATVDYATED-GEEHKVTIVGVDEVDLDIGHVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ ++GD +++ P G + +IL V +
Sbjct: 151 IARALLKAKVGDTVTLFTPAGPQPIDILDVKY 182
>gi|47459270|ref|YP_016132.1| transcription elongation factor [Mycoplasma mobile 163K]
gi|47458599|gb|AAT27921.1| transcription elongation factor [Mycoplasma mobile 163K]
Length = 174
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 90/155 (58%), Gaps = 6/155 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+ +T + + + EL ERP+II+ I +ARA GDLSEN+EY +A+E Q E R+
Sbjct: 22 KLYLTLESVETYKTELNNLINVERPKIIEEIKDARAQGDLSENSEYDSAREKQGQIEDRI 81
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSGLVS 121
E+E I+ I ++ S ++ G+ V L K +KK ++ IVG E D +S
Sbjct: 82 KEIEYILENYTEIQNASKSK-KVTIGSKVLL--KRIDNKKQFEVKIVGTLETDPFLNKIS 138
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SSPI++ ++G ++GD+ +NAP + EIL+ L
Sbjct: 139 YSSPISQGIMGSKIGDVREINAPTKYEV-EILKFL 172
>gi|120612233|ref|YP_971911.1| transcription elongation factor GreB [Acidovorax citrulli AAC00-1]
gi|120590697|gb|ABM34137.1| transcription elongation factor GreB [Acidovorax citrulli AAC00-1]
Length = 188
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL ERP++++ + A + GD SEN +Y K+ + R+ L
Sbjct: 32 ITPAGYARLRSELLDLMDNERPKVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S G D++ FGATV+ V+ + ++ I+G E D VS SP
Sbjct: 92 TKRLDIAEVVDPSLHHGSDQVFFGATVTYVD-DLDVERTVTILGIDEVDSGQSQVSWVSP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ARAL+ GD + + PGG +T EIL+V
Sbjct: 151 VARALLKAREGDEVRLGTPGGLRTLEILRV 180
>gi|104773455|ref|YP_618435.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|103422536|emb|CAI97129.1| Transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 153
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 5/156 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
MV +T +G+ +I+ E+ + + RPR ++ + EARA GDLSEN EY AK EL++L+
Sbjct: 1 MVYYQKMTPEGYKQIEDEIAALKAD-RPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G
Sbjct: 60 -SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGK 116
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ SP+ AL+ + GD + V AP G+ IL V
Sbjct: 117 LPFDSPLGHALMKHKAGDRVKVKAPMGDYEVTILSV 152
>gi|188590574|ref|YP_001920968.1| transcription elongation factor GreA [Clostridium botulinum E3 str.
Alaska E43]
gi|188500855|gb|ACD53991.1| transcription elongation factor GreA [Clostridium botulinum E3 str.
Alaska E43]
Length = 155
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 88/155 (56%), Gaps = 8/155 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+Q+EL +R +R I K A A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENMKKLQEELEYRLTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+I+ A VID + + D+ + G A + VE + D+ +V + D ++ L+SI
Sbjct: 65 MTMISTATVIDDTEI--DKSSLGINSKARIKFVEDD--DEDVITLVTTMDLDPENMLISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S + +AL+GK+ G+ + V APG + T +IL++L+
Sbjct: 121 ESDLGKALMGKKAGETVEVEAPGAKYTVKILEILY 155
>gi|251779859|ref|ZP_04822779.1| transcription elongation factor GreA [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243084174|gb|EES50064.1| transcription elongation factor GreA [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 155
Score = 80.1 bits (196), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 4/153 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+Q+EL +R +R I K A A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENMKKLQEELEYRLTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFG--ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+I+ A VID + + + A + VE + D+ +V + D ++ L+SI S
Sbjct: 65 MTMISTATVIDDTEIDKSTLGINSKARIKFVEDD--DEDVITLVTTMDLDPENMLISIES 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ +AL+GK+ G+ + V APG + T +IL++L+
Sbjct: 123 DLGKALMGKKAGETVEVEAPGAKYTVQILEILY 155
>gi|209519140|ref|ZP_03267945.1| transcription elongation factor GreB [Burkholderia sp. H160]
gi|209500440|gb|EEA00491.1| transcription elongation factor GreB [Burkholderia sp. H160]
Length = 189
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL ERP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 32 MTPAGHRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S D++ FGATV ++ G++ IVG E D+ G VS SP
Sbjct: 92 TKRLDLAEVVDSSRQENVDQVFFGATVDYATED-GEEHKVTIVGIDEVDLDIGHVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ ++GD +++ P G + +IL V +
Sbjct: 151 IARALLKAKVGDTVTLFTPAGPQPIDILDVKY 182
>gi|253579767|ref|ZP_04857035.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848766|gb|EES76728.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 166
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 1/138 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T K +KIQQE+ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+
Sbjct: 2 KEKLTQKDVEKIQQEIDHRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LEN++ A ++ + D + V + + + + Y++V + +SI
Sbjct: 62 RYLENMLKTATIVSDDS-KDDEVGMDDIVEVYFEEDDEIEKYKLVTSIRGNSMENRISIE 120
Query: 124 SPIARALIGKELGDIISV 141
SPI AL G ++GD + V
Sbjct: 121 SPIGMALKGHKVGDRVEV 138
>gi|167563692|ref|ZP_02356608.1| transcription elongation factor GreB [Burkholderia oklahomensis
EO147]
gi|167570842|ref|ZP_02363716.1| transcription elongation factor GreB [Burkholderia oklahomensis
C6786]
Length = 187
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S + D++ FGATV ++ G + IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GTEHTVTIVGVDEVDLDRGHVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ +GD +++ P G + ++L V +
Sbjct: 150 VARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181
>gi|303256877|ref|ZP_07342891.1| transcription elongation factor GreB [Burkholderiales bacterium
1_1_47]
gi|330998874|ref|ZP_08322601.1| transcription elongation factor GreB [Parasutterella
excrementihominis YIT 11859]
gi|302860368|gb|EFL83445.1| transcription elongation factor GreB [Burkholderiales bacterium
1_1_47]
gi|329576088|gb|EGG57607.1| transcription elongation factor GreB [Parasutterella
excrementihominis YIT 11859]
Length = 191
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 81/153 (52%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T ++++ E + ERP ++ ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 30 MTRACYNRLLDERKNLVLVERPNVVNVVAWAASNGDRSENADYQYGKQRLREIDRRIRFL 89
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I +EVIDI D+I FGAT+ + GD+ +IVG EAD G VS SP
Sbjct: 90 NKRIEASEVIDIDKRPPTDQIFFGATI-VYANEQGDESKIRIVGIDEADASVGDVSWISP 148
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR + GD + + P G K EIL+V ++
Sbjct: 149 IARVFLKHFEGDTVLLPTPKGVKKLEILEVTYV 181
>gi|325274307|ref|ZP_08140416.1| transcription elongation factor GreB [Pseudomonas sp. TJI-51]
gi|324100565|gb|EGB98302.1| transcription elongation factor GreB [Pseudomonas sp. TJI-51]
Length = 157
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 83/146 (56%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+TS+G +++EL + RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITSEGHAALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ S ++ FGA V +E + G+ ++IVG E ++ +SI SP+
Sbjct: 66 RKRLEDVKVVAYSPEQEGKVFFGAWVE-IENDDGETMKFRIVGYDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ K+ GD + V+ P GE T+ +
Sbjct: 125 ARALLKKQEGDEVLVHTPTGEATWYV 150
>gi|227329053|ref|ZP_03833077.1| transcription elongation factor GreB [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 158
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK++ E +RP I K +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYDKLRAEHDHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125
+T +++D S + FGA V +E GD K +IVG D+ +SI SP
Sbjct: 66 RKCLTELKIVDYSPQQDGSVFFGAWVE-IENEQGDVKRLRIVGPDEIYGDNKDYISIDSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARA++ K + + +VN P G + + +
Sbjct: 125 MARAMLKKAVDEEFTVNTPDGPREWFV 151
>gi|320538381|ref|ZP_08038256.1| prokaryotic transcription elongation factor, GreA/GreB protein
[Treponema phagedenis F0421]
gi|320144766|gb|EFW36507.1| prokaryotic transcription elongation factor, GreA/GreB protein
[Treponema phagedenis F0421]
Length = 893
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 81/149 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT+K + ++EL+ + P K I +A GDL ENAEY+AA+E Q + L
Sbjct: 740 VTAKMLEAKKKELQEIIDIKIPENSKEIGKALELGDLRENAEYKAAREEQTRLNNMVTRL 799
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I RA+V D + + +++FG V L SG+ + Y I+G E++ + G++S SP+
Sbjct: 800 QEEIERAQVFDPTATTIGKVSFGTIVELKNHTSGENEVYTILGPWESNPEGGVISYMSPL 859
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
L+ + G+ +S EK YEIL +
Sbjct: 860 GTNLLNHKKGEKLSFTISEDEKIYEILNI 888
>gi|187925055|ref|YP_001896697.1| transcription elongation factor GreB [Burkholderia phytofirmans
PsJN]
gi|187716249|gb|ACD17473.1| transcription elongation factor GreB [Burkholderia phytofirmans
PsJN]
Length = 189
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL +RP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 32 ITPAGYRRMRDELLHLIDVDRPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S D++ FGATV ++ G+ IVG E D+ G VS SP
Sbjct: 92 TKRLDLAEVVDSSKQENVDQVFFGATVEYATQD-GETHIVTIVGIDEVDLDIGHVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ ++GD +++ P G + +IL V +
Sbjct: 151 IARALLKAKVGDTVTLYTPAGPQPIDILDVKY 182
>gi|119952935|ref|YP_945144.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
turicatae 91E135]
gi|119861706|gb|AAX17474.1| transcription elongation factor GreA [Borrelia turicatae 91E135]
Length = 900
Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 69/126 (54%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L + I
Sbjct: 751 LSKKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNSLMSEID 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V+++ K++ +++Y I G E++ G++S SP L+
Sbjct: 811 FAKVIDTKELQSSVVGFGTKVTMINKDTKREESYLIFGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGD 137
+ GD
Sbjct: 871 DAKEGD 876
>gi|28211542|ref|NP_782486.1| transcription elongation factor greA [Clostridium tetani E88]
gi|28203983|gb|AAO36423.1| transcription elongation factor greA [Clostridium tetani E88]
Length = 154
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 87/154 (56%), Gaps = 8/154 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +K+++EL +R +R I K EA A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENMNKLKEELEYRMTTKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+I+ A VID + D+ G + VE + + N +V +A+ + +S+
Sbjct: 65 LTMISTASVID--EKNQDKSVLGVNSKCKIKFVEDDF--ETNVSLVTTMDAEPEKMHISV 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL+GK++GD++ V APG + T E+L+++
Sbjct: 121 ESDLGKALMGKKVGDVVEVYAPGEKYTVEVLEMI 154
>gi|331007819|ref|ZP_08330923.1| Transcription elongation factor GreB [gamma proteobacterium
IMCC1989]
gi|330418373|gb|EGG92935.1| Transcription elongation factor GreB [gamma proteobacterium
IMCC1989]
Length = 168
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G + EL+ + ERP + + EA GD SEN +Y K+ + R+ L
Sbjct: 15 ITAEGAAHLTAELKQLWKVERPVVTDTVHEAAKNGDRSENGDYIYGKKRLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++D + + + + FGA V+L++ + ++ YQIVG E D+ +S+ SPI
Sbjct: 75 TKRLEELTIVDQAPANQNTVYFGAWVTLIDDDDNTQR-YQIVGPDEFDISQQKISMDSPI 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
A+AL+ K+LGD + + P G+ + I ++ +I
Sbjct: 134 AKALLKKQLGDEVLIVTPNGDTLFYIEKIEYI 165
>gi|253690269|ref|YP_003019459.1| transcription elongation factor GreB [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251756847|gb|ACT14923.1| transcription elongation factor GreB [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 163
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK++ E +RP I K +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYDKLRAEHDHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125
+T +++D S + FGA V +E GD K +IVG D+ +SI SP
Sbjct: 66 RKCLTELKIVDYSPQQDGSVFFGAWVE-IENEQGDVKRLRIVGPDEIYGDNKDYISIDSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARA++ K + + +VN P G + + +
Sbjct: 125 MARAMLKKAVDEEFTVNTPDGPREWFV 151
>gi|83720256|ref|YP_442130.1| transcription elongation factor GreB [Burkholderia thailandensis
E264]
gi|167619078|ref|ZP_02387709.1| transcription elongation factor GreB [Burkholderia thailandensis
Bt4]
gi|83654081|gb|ABC38144.1| transcription elongation factor GreB [Burkholderia thailandensis
E264]
Length = 187
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S + D++ FGATV ++ G + IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GIEHTVTIVGIDEVDLDRGHVSWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ +GD +++ P G + ++L V +
Sbjct: 150 IARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181
>gi|332185240|ref|ZP_08386989.1| transcription elongation factor GreB [Sphingomonas sp. S17]
gi|332014964|gb|EGI57020.1| transcription elongation factor GreB [Sphingomonas sp. S17]
Length = 160
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 86/153 (56%), Gaps = 4/153 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T G+ ++QE ERP+++ I+ A GD SEN +Y K L+ ++ R+
Sbjct: 7 ITPAGYAALRQEYEALFAVERPKLVDTIAWAAGNGDRSENGDYIYGRKRLREIDR-RLGW 65
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + A+VID + ++ FGATV++ +++ +++ +VGD EAD G V ++
Sbjct: 66 LSKRMKAAKVIDPARQEDRSKVWFGATVTIADEDD-NERVLTLVGDDEADAGQGRVGWNA 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ RAL G +GD+ V P GE+ YE++ + +
Sbjct: 125 PLVRALRGAAIGDLRRVVLPAGEREYEVIAITY 157
>gi|312959745|ref|ZP_07774261.1| transcription elongation factor GreB [Pseudomonas fluorescens WH6]
gi|311285911|gb|EFQ64476.1| transcription elongation factor GreB [Pseudomonas fluorescens WH6]
Length = 157
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G + +++EL + +E+RP + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITKEGHEALKKELDYLWREKRPDTTRKVTWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V++ ++ FGA V +E G+ K ++IVG E + +SI SP+
Sbjct: 66 RKRLEDMRVVEYMPEQEGKVFFGAWVD-IENEKGETKRFRIVGYDEIYDRMDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE+ D V P GE + I
Sbjct: 125 ARALLRKEVDDEAIVQTPNGEVCWWI 150
>gi|85708976|ref|ZP_01040042.1| transcription elongation factor [Erythrobacter sp. NAP1]
gi|85690510|gb|EAQ30513.1| transcription elongation factor [Erythrobacter sp. NAP1]
Length = 147
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG-D 84
ERP I++ +S A GD SEN +Y ++ + + L + V+D +
Sbjct: 15 ERPEIVEIVSWAAGNGDRSENGDYIYGRKRMREIDRELGYLSRRMKACRVVDPANQPDRS 74
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
R+ FGATV L +++ +++ IVGD E D GLV SSPIA+AL G +GD+ V P
Sbjct: 75 RVFFGATVELADEDD-ERRTVTIVGDDEQDAGKGLVGWSSPIAKALKGASVGDLRIVKLP 133
Query: 145 GGEKTYEILQV 155
GG K +E++ +
Sbjct: 134 GGLKEWEVMGI 144
>gi|219856286|ref|YP_002473408.1| hypothetical protein CKR_2943 [Clostridium kluyveri NBRC 12016]
gi|219570010|dbj|BAH07994.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 157
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T G K+++EL + + +R I A+ ARA GDLSENA+Y AAKE Q++ E R+
Sbjct: 7 VILTEAGKKKLEEELEYLKTVKRVEIKAALKAARAQGDLSENADYSAAKEDQSMTETRIQ 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELE + A +I+ S++ D T + + + + +V E+DV++ +SI S
Sbjct: 67 ELEYQLKNAVIIE-SSLETDVFDINRTALVKFYDVDEVEEVTLVSSVESDVKNMRISIES 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+ +AL ++GD +V +P G E+ ++L
Sbjct: 126 PLGKALFRLKVGDKATVISPDGNYDVEVEKLL 157
>gi|224532243|ref|ZP_03672875.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia valaisiana VS116]
gi|224511708|gb|EEF82114.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia valaisiana VS116]
Length = 900
Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 69/126 (54%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 751 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVIILNEATGKDESYLILGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGD 137
+ GD
Sbjct: 871 DSKEGD 876
>gi|227328601|ref|ZP_03832625.1| transcription elongation factor GreA [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 79
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 56/74 (75%)
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
R+ FG+TV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGKE D++ + P
Sbjct: 6 RVIFGSTVTVMNLDNEEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVIRTP 65
Query: 145 GGEKTYEILQVLWI 158
GG+ YEIL+V ++
Sbjct: 66 GGDVEYEILKVEYL 79
>gi|225024039|ref|ZP_03713231.1| hypothetical protein EIKCOROL_00906 [Eikenella corrodens ATCC
23834]
gi|224943064|gb|EEG24273.1| hypothetical protein EIKCOROL_00906 [Eikenella corrodens ATCC
23834]
Length = 163
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L
Sbjct: 9 ITPVGWQALKDELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+D T + D+I FGATV L+ N G+++ +IVG E D +S +SP
Sbjct: 69 TKRLEAAQVVDPETREATDQIFFGATVELLRGN-GEEQTVRIVGVDEIDTARHKISWTSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARAL+ GD I + P G + E+L V ++
Sbjct: 128 LARALLKAREGDEIVFHGPEGREEIEVLSVAYV 160
>gi|153955944|ref|YP_001396709.1| GreA2 [Clostridium kluyveri DSM 555]
gi|146348802|gb|EDK35338.1| GreA2 [Clostridium kluyveri DSM 555]
Length = 154
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T G K+++EL + + +R I A+ ARA GDLSENA+Y AAKE Q++ E R+
Sbjct: 4 VILTEAGKKKLEEELEYLKTVKRVEIKAALKAARAQGDLSENADYSAAKEDQSMTETRIQ 63
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELE + A +I+ S++ D T + + + + +V E+DV++ +SI S
Sbjct: 64 ELEYQLKNAVIIE-SSLETDVFDINRTALVKFYDVDEVEEVTLVSSVESDVKNMRISIES 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+ +AL ++GD +V +P G E+ ++L
Sbjct: 123 PLGKALFRLKVGDKATVISPDGNYDVEVEKLL 154
>gi|229826123|ref|ZP_04452192.1| hypothetical protein GCWU000182_01488 [Abiotrophia defectiva ATCC
49176]
gi|229789696|gb|EEP25810.1| hypothetical protein GCWU000182_01488 [Abiotrophia defectiva ATCC
49176]
Length = 167
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T ++++E+ R+ R I+A+ EARA GDLSEN EY AAK +N NE R+ L
Sbjct: 5 LTKNDIRRLEEEIEHRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKRHKNQNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A++I+ + S D + TV++ + +++ +++V D + L++I SP+
Sbjct: 65 EKMIKTAKIIEDDS-SEDEVGPDNTVTVYFIDDDEEETFKLVTAVRGDSLNNLITIDSPL 123
Query: 127 ARALIGKELGD--IISVNAPGG 146
+AL+ K++GD + VN G
Sbjct: 124 GKALLKKKVGDKVYVKVNERSG 145
>gi|329119869|ref|ZP_08248543.1| transcription elongation factor GreB [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464025|gb|EGF10336.1| transcription elongation factor GreB [Neisseria bacilliformis ATCC
BAA-1200]
Length = 190
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L
Sbjct: 36 ITPAGWQALKDELYSLVNKERPEIVQVVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 95
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+VID T + D++ FGATV+L+ N G ++ IVG E D +S SP
Sbjct: 96 TKRLEAAQVIDPETREATDQVFFGATVTLLRGN-GSEQVVSIVGIDETDAARNKISWISP 154
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + + P G + EIL+V +I
Sbjct: 155 LARCLIKAREGDAVVLRTPEGREDIEILEVAYI 187
>gi|189219263|ref|YP_001939904.1| transcription elongation factor GreA fused to uncharacterized
associated domain [Methylacidiphilum infernorum V4]
gi|189186121|gb|ACD83306.1| Transcription elongation factor GreA fused to uncharacterized
associated domain [Methylacidiphilum infernorum V4]
Length = 614
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 69/122 (56%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P K I+ AR+YGDL EN EY+AAKE+Q + R AELE++I+RA D S + +
Sbjct: 476 PENSKDIAHARSYGDLRENHEYKAAKEMQVVLMRRKAELESMISRARATDFSNVDTTTVN 535
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
G VS + + + I+G +++ G++S + ++L+G + GD++ V+ G
Sbjct: 536 IGTVVSYTDLKTNRTNSVAILGAWDSNPSKGIISYLAAFGQSLLGHKTGDVLQVSLEDGI 595
Query: 148 KT 149
T
Sbjct: 596 TT 597
>gi|332972986|gb|EGK10926.1| transcription elongation factor GreB [Kingella kingae ATCC 23330]
Length = 168
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++Q EL +ERP I + ++ A + GD SEN +Y K + R+ L
Sbjct: 14 ITPTGHRRLQDELYQLVHKERPEIAQIVNWAASNGDRSENGDYLYGKRRMCEIDRRIRFL 73
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V++ T D+I F ATV+L E+ +G ++ +IVG+ E D G +S SP
Sbjct: 74 TKRLEHALVVNPETREPTDQIFFAATVTL-ERGNGAEQVVKIVGEDEIDSAQGKISWKSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V +I
Sbjct: 133 LARVLIKAREGDTVWLNTPDGREQIEILIVEYI 165
>gi|256848431|ref|ZP_05553873.1| transcription elongation factor GreB [Lactobacillus coleohominis
101-4-CHN]
gi|256714698|gb|EEU29677.1| transcription elongation factor GreB [Lactobacillus coleohominis
101-4-CHN]
Length = 155
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/147 (35%), Positives = 87/147 (59%), Gaps = 7/147 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T +G+ +I+ ++ ++ERP I + ARA GDLSEN EY AK +L++L E R+
Sbjct: 9 MTPEGYHEIELQIE-ELKKERPTKIARLKAARALGDLSENTEYSTAKRDLRHL-ESRLRY 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +T A+VI G I G+TV++ + + YQIVG EAD+ + ++ SP
Sbjct: 67 LNKQLTYAKVI--QHRDGGPIDLGSTVTIEFLDDHSQITYQIVGTHEADLANHKLAFDSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ +A++GK +++V AP + TY++
Sbjct: 125 LGQAMMGKMANLVVNVVAP--DSTYQV 149
>gi|332528000|ref|ZP_08404034.1| transcription elongation factor GreB [Rubrivivax benzoatilyticus
JA2]
gi|332112574|gb|EGJ12367.1| transcription elongation factor GreB [Rubrivivax benzoatilyticus
JA2]
Length = 193
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +++EL ERP+I++ +S A GD SEN +Y K+ + R+ L
Sbjct: 33 MTPQGWRMLREELMTLLDVERPKIVETVSWAAKNGDRSENGDYLYGKKRLREIDRRIRFL 92
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV D S G D++ FGATV+ G+++ I G EAD G VS +P
Sbjct: 93 TKRLDIAEVADPSAHHGSDQVFFGATVTYANAK-GEERTITIKGIDEADNLKGEVSWVAP 151
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ GD + + PGG +T E+++V +
Sbjct: 152 IARALLKSREGDEVQLMTPGGLETIEVVEVRY 183
>gi|296160041|ref|ZP_06842861.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
gi|295889787|gb|EFG69585.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
Length = 189
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL ERP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 32 ITPAGYRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AE++D S D++ FGATV ++ G+ IVG E D+ VS SP
Sbjct: 92 TKRLDLAEIVDSSKQENVDQVFFGATVEYATED-GEVHTVTIVGIDEVDLDIAHVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ ++GD +++ P G + +IL V +
Sbjct: 151 IARALLKAKIGDTVTLYTPAGPQPIDILDVKY 182
>gi|23015545|ref|ZP_00055318.1| COG0782: Transcription elongation factor [Magnetospirillum
magnetotacticum MS-1]
Length = 182
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
+GF ++ EL + ERP++++ +S A GD SEN +Y K+ + R+ L
Sbjct: 33 QGFAALKAELSHLHKVERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRIRFLTKR 92
Query: 70 ITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGLVSISSPIA 127
+ A V+D D++ FGATV+ N+ D++ IVG EAD++ GL+S SP+A
Sbjct: 93 MESAHVVDPDQQKNRDQVFFGATVTYA--NARDEEITVTIVGIDEADLERGLISWISPVA 150
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157
RAL+ GD + V P G + E++ + +
Sbjct: 151 RALLKASEGDTVPVRTPSGTEMIEVVAIRY 180
>gi|294790721|ref|ZP_06755879.1| transcription elongation factor GreA [Scardovia inopinata F0304]
gi|294458618|gb|EFG26971.1| transcription elongation factor GreA [Scardovia inopinata F0304]
Length = 160
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 83/142 (58%), Gaps = 7/142 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +DK+++EL +R+ E R I + I+ ARA GDLSEN YQAA+E Q NEGR+ EL
Sbjct: 9 LTQEAYDKLREELTYREGELREEIKEKIAAARAEGDLSENGGYQAAREEQGKNEGRIQEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSISS 124
+ ++++ ++ G+ V L + +G + Y ++G + V + +VS S
Sbjct: 69 TVKLRDSQILKAPNPG--KVGPGSLVVL--EIAGREMTY-VLGSHDLAVATDYDIVSPES 123
Query: 125 PIARALIGKELGDIISVNAPGG 146
PI A+ GK+ GD +S AP G
Sbjct: 124 PIGAAINGKKTGDTVSYTAPNG 145
>gi|203287597|ref|YP_002222612.1| transcription elongation factor EF [Borrelia recurrentis A1]
gi|201084817|gb|ACH94391.1| transcription elongation factor EF [Borrelia recurrentis A1]
Length = 900
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L + I A
Sbjct: 753 KKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNTLMSEIDVA 812
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+VIDI + + FG V+++ K++ +++Y I G E++ G++S SP L+
Sbjct: 813 KVIDIKELQSSVVGFGTKVTMINKDTEREESYLIFGPWESNPDEGIISYKSPFGENLLDS 872
Query: 134 ELGD 137
GD
Sbjct: 873 REGD 876
>gi|224532797|ref|ZP_03673413.1| transcription elongation factor GreA [Borrelia burgdorferi WI91-23]
gi|224512285|gb|EEF82670.1| transcription elongation factor GreA [Borrelia burgdorferi WI91-23]
Length = 901
Score = 78.6 bits (192), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 69/126 (54%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGD 137
+ GD
Sbjct: 872 DSKEGD 877
>gi|124267908|ref|YP_001021912.1| transcription elongation factor [Methylibium petroleiphilum PM1]
gi|124260683|gb|ABM95677.1| transcription elongation factor [Methylibium petroleiphilum PM1]
Length = 213
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T GF +++ EL +ERP++++ +S A GD SEN +Y K+ + R+ L
Sbjct: 58 ITPAGFARLRAELMQLLDDERPKVVETVSWAAKNGDRSENGDYLYGKKRLREIDRRIRFL 117
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV D S G D++ FGATV+ + G ++ I G EAD VS SP
Sbjct: 118 TKRLEIAEVADPSVHRGSDQVFFGATVTYAAPD-GVERTITIKGIDEADNLQAEVSWISP 176
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ +GD +++ P G +T E+++V +
Sbjct: 177 VARALLKARVGDEVTLLTPQGPQTIEVIEVRY 208
>gi|203284058|ref|YP_002221798.1| transcription elongation factor EF [Borrelia duttonii Ly]
gi|201083501|gb|ACH93092.1| transcription elongation factor EF [Borrelia duttonii Ly]
Length = 900
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 69/124 (55%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L + I A
Sbjct: 753 KKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNTLMSEIDVA 812
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+VIDI + + FG V+++ K++ +++Y I G E++ G++S SP L+
Sbjct: 813 KVIDIKELQSSVVGFGTKVTMINKDTEREESYLIFGPWESNPDEGIISYKSPFGENLLDS 872
Query: 134 ELGD 137
GD
Sbjct: 873 REGD 876
>gi|269837141|ref|YP_003319369.1| GreA/GreB family elongation factor [Sphaerobacter thermophilus DSM
20745]
gi|269786404|gb|ACZ38547.1| GreA/GreB family elongation factor [Sphaerobacter thermophilus DSM
20745]
Length = 156
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 86/151 (56%), Gaps = 2/151 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T++G +++EL + + P + I E GD+S+N+EY+ KE E R+
Sbjct: 7 VTLTAEGKADLERELHHLRTVKLPDVTARIQELSMDGDVSDNSEYEDTKEELIQLEARIR 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
E+EN++ R VI G + G+ V++V++ +G + + +V +EA+ G +S S
Sbjct: 67 EIENLLRRVRVIAPGKSDG-VVKLGSRVTIVDE-TGQAETWILVSPEEANTLQGKISTES 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ AL+ K +GD + V APGGE ++ I +V
Sbjct: 125 PVGAALLDKRVGDSVVVRAPGGETSFTIEKV 155
>gi|239618392|ref|YP_002941714.1| transcription elongation factor GreA [Kosmotoga olearia TBF 19.5.1]
gi|239507223|gb|ACR80710.1| transcription elongation factor GreA [Kosmotoga olearia TBF 19.5.1]
Length = 158
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 5/153 (3%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T +G++ ++ EL +++ + + I EAR GDLSEN+EY AK Q + R+
Sbjct: 7 IYLTKEGYENLKNELNTLRKKLMYEVAERIKEARELGDLSENSEYDEAKNEQGKIDSRIK 66
Query: 65 ELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
ELE I+ AE+I+ GD + GA V L + ++ +IV QEAD+ +S
Sbjct: 67 ELEYILDNAEIIE---DDGDNSVVKLGAKVRLRNLKTNEEIEIRIVNSQEADIFENKISA 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPI +A++ + + D + V P G Y+I+ +
Sbjct: 124 DSPIGKAVLERSVDDEVVVRTPSGIIKYKIITI 156
>gi|160901647|ref|YP_001567228.1| transcription elongation factor GreA [Petrotoga mobilis SJ95]
gi|189042243|sp|A9BFC0|GREA_PETMO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|160359291|gb|ABX30905.1| transcription elongation factor GreA [Petrotoga mobilis SJ95]
Length = 159
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 89/151 (58%), Gaps = 2/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K+++E ++ + + I EAR GDLSEN+EY+ AK Q + + R+ E+
Sbjct: 8 LTREGYEKLKREREELKKRLMGEVAERIKEARELGDLSENSEYEEAKNEQGMIDSRIKEI 67
Query: 67 ENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ I+ AE+I+ ++ G V + + ++ + +V QEA+++ +SI SP
Sbjct: 68 DYILDNAEIIENGGNHDNSTVSLGKKVKIKDYRLNREQEFVLVTPQEANIEENKISIESP 127
Query: 126 IARALIGKELGDIISV-NAPGGEKTYEILQV 155
I R+L+G++ G++I++ A G K EI ++
Sbjct: 128 IGRSLLGRKKGEVINIKTARGSSKKIEIKEI 158
>gi|223940861|ref|ZP_03632689.1| GreA/GreB family elongation factor [bacterium Ellin514]
gi|223890471|gb|EEF57004.1| GreA/GreB family elongation factor [bacterium Ellin514]
Length = 606
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 76/129 (58%)
Query: 24 QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83
Q++ P K I+ AR+YGDL EN EY+AAKE+Q + R AELE+ + RA D
Sbjct: 469 QKKIPANSKEIAIARSYGDLRENHEYKAAKEMQKILMRRKAELESELVRARGTDYLNPKT 528
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
D ++ G V + + NS +++ I+G ++D + ++S +P+A++L+ ++ G+ +
Sbjct: 529 DAVSIGTIVKVTDLNSSHIEHFNILGAWDSDPEKNVISYLAPLAQSLLNRKPGEEVDYEM 588
Query: 144 PGGEKTYEI 152
G ++ + I
Sbjct: 589 DGQKRRFRI 597
>gi|315037460|ref|YP_004031028.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
1112]
gi|312275593|gb|ADQ58233.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
1112]
Length = 143
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 79/149 (53%), Gaps = 13/149 (8%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +I+ E+ R ++ RPR IK + A A GDLSEN EY AK L
Sbjct: 7 MTPEGYKQIEDEI-ARLKKGRPRRIKILQAACALGDLSENTEYTEAKRY----------L 55
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ E+++ T ++ G TV L + D + Y+IVG EAD+ G +S SP+
Sbjct: 56 GKQLKYTEIVE--TKDDGKVDLGKTVVLKFDDDEDTEEYKIVGRMEADLADGKISFGSPL 113
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+A++ KE G +V AP GE I++V
Sbjct: 114 GQAIMKKEAGTTSTVGAPAGEYKVTIVEV 142
>gi|195942372|ref|ZP_03087754.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
burgdorferi 80a]
Length = 901
Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 68/126 (53%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGD 137
GD
Sbjct: 872 DSREGD 877
>gi|87122832|ref|ZP_01078703.1| transcription elongation factor GreB [Marinomonas sp. MED121]
gi|86161884|gb|EAQ63178.1| transcription elongation factor GreB [Marinomonas sp. MED121]
Length = 168
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 3/150 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T +G K+ EL++ +E+RP++ +++ EA A GD SENAEY K+L+ ++ R+
Sbjct: 15 ITKEGAQKLTTELKYLWKEKRPQVTESVREAAAQGDRSENAEYIYGKKQLREIDR-RVRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + V+D I FGA V+L E + + K ++IVG E D S +SI SP
Sbjct: 74 LEKRLEAFTVVDRLPEDQLSIYFGAWVTL-EDDDENTKYFRIVGPDELDHDSRYISIDSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+A+AL+ K+ GD I + G Y I +V
Sbjct: 133 MAKALLKKQEGDEIELKLVTGIVNYIIDKV 162
>gi|148553320|ref|YP_001260902.1| transcription elongation factor GreB [Sphingomonas wittichii RW1]
gi|148498510|gb|ABQ66764.1| transcription elongation factor GreB [Sphingomonas wittichii RW1]
Length = 163
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 87/153 (56%), Gaps = 4/153 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T GF ++ ERP +++ IS A GD SEN +Y K+L+ ++ +A
Sbjct: 10 ITPAGFAAMRARYDHLFGTERPALVEVISWAAGNGDRSENGDYIYGRKKLREIDR-ELAY 68
Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + A+V+D + + ++ FGATV++V+++ ++ +VG EAD SG +S S
Sbjct: 69 LSRRMKAAKVVDPARQAERGKVFFGATVTVVDEDDVER-TVTLVGADEADAGSGRISWLS 127
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL G +GD+ V PGG++ EIL + +
Sbjct: 128 PLARALRGAAVGDVRRVALPGGDREQEILSIRY 160
>gi|312149070|gb|ADQ29141.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia burgdorferi N40]
Length = 901
Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 68/126 (53%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGD 137
GD
Sbjct: 872 DSREGD 877
>gi|226320676|ref|ZP_03796234.1| transcription elongation factor GreA [Borrelia burgdorferi 29805]
gi|226233892|gb|EEH32615.1| transcription elongation factor GreA [Borrelia burgdorferi 29805]
Length = 901
Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 68/126 (53%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGD 137
GD
Sbjct: 872 DSREGD 877
>gi|195941869|ref|ZP_03087251.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
burgdorferi 80a]
gi|195942362|ref|ZP_03087744.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
burgdorferi 80a]
gi|195942405|ref|ZP_03087787.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
burgdorferi 80a]
Length = 901
Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 68/126 (53%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGD 137
GD
Sbjct: 872 DSREGD 877
>gi|225549223|ref|ZP_03770196.1| transcription elongation factor GreA [Borrelia burgdorferi 94a]
gi|225370081|gb|EEG99521.1| transcription elongation factor GreA [Borrelia burgdorferi 94a]
Length = 901
Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 68/126 (53%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGD 137
GD
Sbjct: 872 DSREGD 877
>gi|15594477|ref|NP_212266.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
burgdorferi B31]
gi|218249878|ref|YP_002374660.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia burgdorferi ZS7]
gi|223889075|ref|ZP_03623664.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia burgdorferi 64b]
gi|7531126|sp|O51157|GREA_BORBU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|2688004|gb|AAC66506.1| transcription elongation factor (greA) [Borrelia burgdorferi B31]
gi|218165066|gb|ACK75127.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia burgdorferi ZS7]
gi|223885324|gb|EEF56425.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia burgdorferi 64b]
Length = 901
Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 68/126 (53%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGD 137
GD
Sbjct: 872 DSREGD 877
>gi|311747108|ref|ZP_07720893.1| transcription elongation factor GreB [Algoriphagus sp. PR1]
gi|126578813|gb|EAZ82977.1| transcription elongation factor GreB [Algoriphagus sp. PR1]
Length = 171
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 82/149 (55%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+TS+G K+++E + ERP + ++ A + GD SENA+Y K+ + R+ L
Sbjct: 19 ITSEGLQKLKEEHDHLWRVERPDVTAKVAWAASLGDRSENADYHYNKKRLREIDNRLRYL 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I +VI+ ++ FGA V + + G K ++IVG +E +S+ SP+
Sbjct: 79 RKCIDDFKVIEYHPNQEGKVNFGAWVEIKNEKKGLKNRFRIVGYEELIGNKNYISMDSPM 138
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A++L+GK +GD + V+ G+ ++IL++
Sbjct: 139 AKSLLGKAVGDEVIVSTKLGDFVWKILKI 167
>gi|225549861|ref|ZP_03770823.1| transcription elongation factor GreA [Borrelia burgdorferi 118a]
gi|225369552|gb|EEG99003.1| transcription elongation factor GreA [Borrelia burgdorferi 118a]
gi|312148364|gb|ADQ31023.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia burgdorferi JD1]
Length = 901
Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 68/126 (53%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGD 137
GD
Sbjct: 872 DSREGD 877
>gi|254513872|ref|ZP_05125933.1| transcription elongation factor GreB [gamma proteobacterium NOR5-3]
gi|219676115|gb|EED32480.1| transcription elongation factor GreB [gamma proteobacterium NOR5-3]
Length = 167
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 5/153 (3%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T+ G +++ EL WR+ ERP + A+ +A GD SEN +Y K+ + R+
Sbjct: 15 ITAAGEARLRAELDNLWRK--ERPVVALAVQDAAKNGDRSENGDYIYGKKRLREIDSRVR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ + +V+ + RI FGATV VE + I+G E + G VSI S
Sbjct: 73 FISKRLESLQVVRETPSDTSRIFFGATVE-VEDQHAVIQTITILGPDEFESSRGEVSIDS 131
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
PIAR L+GK +GD + + +PGGE+ E+L + +
Sbjct: 132 PIARVLLGKSVGDSVRLESPGGERELEVLDIRY 164
>gi|30249800|ref|NP_841870.1| transcription elongation factor GreB [Nitrosomonas europaea ATCC
19718]
gi|30180837|emb|CAD85759.1| Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas
europaea ATCC 19718]
Length = 182
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ E + ERP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 29 ITPGGYQRLKDEFDQLWRVERPELVKVVSWAASNGDRSENGDYIYGKRRLREIDRRLRFL 88
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AE+ID D++ FGATV++ + G+++ Y IVG EA+ G +S SP
Sbjct: 89 SRRLDNAEIIDPKQRGECDQVFFGATVTVCNQR-GEEQTYSIVGIDEAEPGRGWISWISP 147
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+A+AL+ GD++ + PGG + E++++
Sbjct: 148 LAKALLKAREGDVVPLQTPGGPQELEVVEI 177
>gi|229589215|ref|YP_002871334.1| transcription elongation factor [Pseudomonas fluorescens SBW25]
gi|229361081|emb|CAY47944.1| transcription elongation factor [Pseudomonas fluorescens SBW25]
Length = 157
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G + +++EL + +E+RP + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITKEGHEALKKELDYLWREKRPDTTRKVTWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V++ ++ FGA V +E G+ K ++IVG E + +SI SP+
Sbjct: 66 RKRLEDMRVVEYMPEQEGKVFFGAWVD-IENEQGETKRFRIVGYDEIYERMDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE+ D V P G+ + I
Sbjct: 125 ARALLRKEVDDEAIVQTPSGDVCWWI 150
>gi|237746721|ref|ZP_04577201.1| transcription elongation factor and transcript cleavage
[Oxalobacter formigenes HOxBLS]
gi|229378072|gb|EEO28163.1| transcription elongation factor and transcript cleavage
[Oxalobacter formigenes HOxBLS]
Length = 184
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 81/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K++ EL ERP++++ +S A + GD SEN +Y K + R+ L
Sbjct: 30 ITPAGLKKLKDELLELIDTERPQVVQTVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 89
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I AE D S G D+I FGATV+ E+ +G++ IVG E D G +S SP
Sbjct: 90 IKRIEAAEEFDPSVHYGNDQIFFGATVTY-ERQNGEENTVTIVGIDEFDPLQGKISWISP 148
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+AR LI GD ++++ P G + IL+V +
Sbjct: 149 MARTLIKAHEGDTVTLHTPAGIEELVILEVSY 180
>gi|225551922|ref|ZP_03772862.1| transcription elongation factor GreA [Borrelia sp. SV1]
gi|225370920|gb|EEH00350.1| transcription elongation factor GreA [Borrelia sp. SV1]
Length = 901
Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 68/126 (53%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPGNSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEATGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGD 137
GD
Sbjct: 872 DSREGD 877
>gi|50123038|ref|YP_052205.1| transcription elongation factor GreB [Pectobacterium atrosepticum
SCRI1043]
gi|49613564|emb|CAG77015.1| transcription elongation factor [Pectobacterium atrosepticum
SCRI1043]
Length = 159
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK++ E +RP I K +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYDKLRAEHEHLWNIKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISSP 125
+ +++D S + FGA + +E GD K +IVG E S +SI SP
Sbjct: 66 RKCLAELKIVDYSPQQDGSVFFGAWIE-IENEQGDVKRLRIVGPDEIYGDSKDYISIDSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARA++ K + + +VN P G + + I
Sbjct: 125 MARAMLKKAVDEEFTVNTPDGPREWFI 151
>gi|118594719|ref|ZP_01552066.1| transcription elongation factor GreB [Methylophilales bacterium
HTCC2181]
gi|118440497|gb|EAV47124.1| transcription elongation factor GreB [Methylophilales bacterium
HTCC2181]
Length = 144
Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 1/142 (0%)
Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
+Q+EL + +RP +K IS A GD SEN +Y K+ + R+ L I A+
Sbjct: 1 MQRELSSLIKLDRPETVKVISWAAGNGDRSENGDYIYGKKKLRQIDSRIKFLLTAIEDAD 60
Query: 75 VIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
++ ST + ++ FGA V L+++ S + +IVG E + G +S SP+A+ALIG+
Sbjct: 61 IVHPSTSIDKKKVYFGANVKLLDEQSKSTLDIRIVGAHEINHNIGNISWLSPLAKALIGR 120
Query: 134 ELGDIISVNAPGGEKTYEILQV 155
D+I V P KTY IL+V
Sbjct: 121 TSSDLIEVQTPMNIKTYIILKV 142
>gi|308235569|ref|ZP_07666306.1| transcription elongation factor GreA [Gardnerella vaginalis ATCC
14018]
gi|311114342|ref|YP_003985563.1| transcription elongation factor GreA [Gardnerella vaginalis ATCC
14019]
gi|310945836|gb|ADP38540.1| transcription elongation factor GreA [Gardnerella vaginalis ATCC
14019]
Length = 159
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 86/144 (59%), Gaps = 7/144 (4%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q NEGR+
Sbjct: 7 ILLTKEAYDKLKEELAHREGEYRDEITERIAAARAEGDLSENGGYQAAREEQGKNEGRIN 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSI 122
EL + A++++ + G+ V+L + +G + Y ++G ++ V + ++S
Sbjct: 67 ELIVKLRNAKILEAPEAGS--VGNGSLVTL--ELAGREMTY-VLGSRDIAVATDYDVISP 121
Query: 123 SSPIARALIGKELGDIISVNAPGG 146
SPI A++G + GD +S +AP G
Sbjct: 122 ESPIGAAIMGAKAGDTVSYSAPNG 145
>gi|213584093|ref|ZP_03365919.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 71
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 54/71 (76%)
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGKE D++ + PGG+
Sbjct: 1 FGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVIKTPGGD 60
Query: 148 KTYEILQVLWI 158
YE+L+V ++
Sbjct: 61 VEYEVLKVEYL 71
>gi|297626874|ref|YP_003688637.1| Transcription elongation factor GreA [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296922639|emb|CBL57216.1| Transcription elongation factor GreA [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 167
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 88/163 (53%), Gaps = 9/163 (5%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M DK I +T + K+Q+EL + + E R I K I A+A GDLSEN Y AA+E Q
Sbjct: 1 MSDKQTIWMTQDAYTKLQEELDYLKGEGRSLIAKKIGAAKAEGDLSENGGYHAAREEQGQ 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-----A 113
E R+ +LE ++ AEV + + D + G+TV++ D + ++G +E
Sbjct: 61 QELRIRQLEQMLQHAEVGEPQG-APDEVTAGSTVTVAYDGDPDDTDVFLLGSREMMGVDK 119
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
V + + S SP+ A++G+ GD + AP G E + +I++V
Sbjct: 120 SVDTQVFSPQSPLGAAVLGRSAGDTVEYQAPNGREVSVKIMKV 162
>gi|153813303|ref|ZP_01965971.1| hypothetical protein RUMOBE_03720 [Ruminococcus obeum ATCC 29174]
gi|149830593|gb|EDM85684.1| hypothetical protein RUMOBE_03720 [Ruminococcus obeum ATCC 29174]
Length = 208
Score = 77.8 bits (190), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
R I+A+ EARA GDLSEN EY AAK+ +N NE R+ LE ++ A V+D S+ S D +
Sbjct: 67 RKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRIRYLERMLKTATVVDDSSKS-DEV 125
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
V + + G+ + Y++V + VSI SPI +AL G +GD + VN
Sbjct: 126 GMDDIVEVEFEEDGEVEKYKLVTSIRGNSMENRVSIESPIGKALKGHRVGDRVLVNV 182
>gi|91784882|ref|YP_560088.1| transcription elongation factor GreB [Burkholderia xenovorans
LB400]
gi|91688836|gb|ABE32036.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400]
Length = 189
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 81/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL ERP +++ +S A + GD SEN +Y K + R+ L
Sbjct: 32 ITPAGYRRMRDELLHLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AE++D S D++ FGATV ++ G+ IVG E D+ VS SP
Sbjct: 92 TKRLDLAEIVDSSKQENVDQVFFGATVEYATED-GEVHTVTIVGIDEVDLDIAHVSWISP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARAL+ ++GD +++ P G + +IL V +
Sbjct: 151 IARALLKAKIGDTVTLYTPAGPQPIDILDVKY 182
>gi|71894394|ref|YP_278502.1| transcription elongation factor GreA [Mycoplasma synoviae 53]
gi|71851182|gb|AAZ43791.1| transcription elongation factor GreA [Mycoplasma synoviae 53]
Length = 157
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 5/150 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI ++ + DK ++E + +R I A+ EARA GDLSENAEY A++ Q + E R
Sbjct: 4 EKIFLSQETLDKYKKEYEKLVKVDRVEIQNALKEARAQGDLSENAEYDVARDKQAVVEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE I+ +A++ I + I+ G+ V+ ++ ++ + I+G +AD + +S
Sbjct: 64 ILELEGILDKAQL--IKHKDENTISIGSKVTFLDLSTNKEDEVTIMGIHDADPFNKKISN 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+A A++ K+ GD + V G + YEI
Sbjct: 122 YSPLATAMMSKKEGDTVEVE---GLEKYEI 148
>gi|254786831|ref|YP_003074260.1| transcription elongation factor GreB [Teredinibacter turnerae
T7901]
gi|237686835|gb|ACR14099.1| transcription elongation factor GreB [Teredinibacter turnerae
T7901]
Length = 172
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL + + ERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 22 ITEEGLTKLKSELDYLWRTERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 81
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I +V+ + + FG+ V +E +G+ K +IVG E + +SI SP+
Sbjct: 82 RKRIDSLKVVRYAKEQEGSVYFGSWVK-IENEAGENKELRIVGYDEIFGEKNYISIDSPM 140
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+AL+ K++GD V GE +EI+++
Sbjct: 141 AKALLRKKVGDEAIVKTEVGEFCWEIMEI 169
>gi|326318293|ref|YP_004235965.1| transcription elongation factor GreB [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375129|gb|ADX47398.1| transcription elongation factor GreB [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 189
Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL ERP++++ + A + GD SEN +Y K+ + R+ L
Sbjct: 33 MTPAGYARLRSELLELMDNERPKVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 92
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S G D++ FGATV+ V+ + ++ I+G E D VS SP
Sbjct: 93 TKRLDMAEVVDPSLHHGSDQVFFGATVTYVD-DLDVERTVTILGIDEVDSSQSQVSWVSP 151
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ GD + + PGG +T EIL+V +
Sbjct: 152 VARALLKAREGDEVRLGTPGGLRTLEILRVEY 183
>gi|238021831|ref|ZP_04602257.1| hypothetical protein GCWU000324_01735 [Kingella oralis ATCC 51147]
gi|237866445|gb|EEP67487.1| hypothetical protein GCWU000324_01735 [Kingella oralis ATCC 51147]
Length = 162
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +Q EL +ERP I++ ++ A + GD SEN +Y K + R+ L
Sbjct: 8 MTPAGHAALQNELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 67
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V++ T D++ F ATV+L E+ +G ++ +IVG+ E D +S SP
Sbjct: 68 TKRLQDAVVVNPETREPTDQVFFAATVTL-ERGNGAEQTVRIVGEDEIDAAHNKISWKSP 126
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALI GD + +N P G + EIL V +I
Sbjct: 127 LARALIKAREGDSVWLNTPEGREQIEILAVEYI 159
>gi|227112177|ref|ZP_03825833.1| transcription elongation factor GreB [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 159
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 2/145 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK++ E +RP I K +S A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYDKLRAEHDHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSP 125
+T +++D S + FGA V +E G+ K +IVG D+ +SI SP
Sbjct: 66 RKCLTELKIVDYSPQQDGSVFFGAWVE-IENEQGEVKRLRIVGPDEIYGDNKDYISIDSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTY 150
+ARA++ K + + +VN P G + +
Sbjct: 125 MARAMLKKAVDEEFTVNTPDGPREW 149
>gi|329901876|ref|ZP_08272963.1| Transcription elongation factor GreB [Oxalobacteraceae bacterium
IMCC9480]
gi|327548968|gb|EGF33585.1| Transcription elongation factor GreB [Oxalobacteraceae bacterium
IMCC9480]
Length = 187
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T GF ++++EL +RP ++ + A + GD SEN +Y K + R+ L
Sbjct: 31 MTPAGFQRMREELLHLIDVDRPEVVHIVHWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D + G+ ++ FGATV E ++G++ IVG E D G +S SP
Sbjct: 91 TKRLDVAEVVDPTIHHGNEQVFFGATVRY-ENSAGEQHVITIVGIDELDPLHGKISWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARA+ +GD I++ P G + +IL+V +
Sbjct: 150 VARAITKSRVGDTITLKTPSGVEELQILEVTY 181
>gi|145309060|gb|ABP57740.1| transcription elongation factor GreB [Chromobacterium violaceum]
Length = 190
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL ERP +++ ++ A + GD SEN +Y K + R+ L
Sbjct: 36 ITPGGWQRLKDELYHLVNRERPEMVQVVNWAASNGDRSENGDYLYGKRRLREIDRRIRFL 95
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D T D++ F ATV L+E+ G ++ +IVG E D+ G +S SP
Sbjct: 96 TKRLEIAEVVDPETREATDQVFFSATV-LIERGDGSEQLLRIVGVDEIDLARGHISWISP 154
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IAR L+ GD + P G++ E+L+V
Sbjct: 155 IARTLLKAREGDSVLFRGPDGDEDIEVLEV 184
>gi|224282816|ref|ZP_03646138.1| transcription elongation factor GreA [Bifidobacterium bifidum NCIMB
41171]
gi|310287270|ref|YP_003938528.1| transcription elongation factor greA [Bifidobacterium bifidum S17]
gi|311064119|ref|YP_003970844.1| transcription elongation factor [Bifidobacterium bifidum PRL2010]
gi|313139975|ref|ZP_07802168.1| transcription elongation factor GreA [Bifidobacterium bifidum NCIMB
41171]
gi|309251206|gb|ADO52954.1| Transcription elongation factor greA [Bifidobacterium bifidum S17]
gi|310866438|gb|ADP35807.1| GreA Transcription elongation factor [Bifidobacterium bifidum
PRL2010]
gi|313132485|gb|EFR50102.1| transcription elongation factor GreA [Bifidobacterium bifidum NCIMB
41171]
Length = 159
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 7/142 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + FD ++ EL RQ + R I K I+ ARA GDLSEN YQAA+E Q NEGR+ EL
Sbjct: 9 LTQEAFDTLKDELAHRQGQYREEITKRIAAARAEGDLSENGGYQAAREEQAKNEGRINEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSISS 124
+ A +++ ++ G+ V+L + +G + Y + G ++ V + ++S S
Sbjct: 69 TVKLRNATIVEAPKAG--KVGNGSLVTL--ELAGREMTYAL-GSRDIKVATKYDVISPES 123
Query: 125 PIARALIGKELGDIISVNAPGG 146
PI A++G GD +S AP G
Sbjct: 124 PIGAAILGANEGDTVSYKAPNG 145
>gi|187918011|ref|YP_001883574.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
hermsii DAH]
gi|119860859|gb|AAX16654.1| transcription elongation factor GreA [Borrelia hermsii DAH]
Length = 901
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 68/124 (54%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L I A
Sbjct: 754 KKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNSLMLEIDVA 813
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+V+D + + FG V+++ K++G ++ Y I G E++ G++S SP L+
Sbjct: 814 KVVDTKELQSSVVGFGTKVTMINKDTGREEFYLIFGPWESNPDEGIISYKSPFGENLLDA 873
Query: 134 ELGD 137
+ GD
Sbjct: 874 KEGD 877
>gi|325982789|ref|YP_004295191.1| transcription elongation factor GreB [Nitrosomonas sp. AL212]
gi|325532308|gb|ADZ27029.1| transcription elongation factor GreB [Nitrosomonas sp. AL212]
Length = 182
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ E + +RP ++K I+ A + GD SEN +Y K+ + R+ L
Sbjct: 29 ITPDGYQRLRDEFDQLWKVDRPELVKTITWAASNGDRSENGDYIYGKKRLREIDRRLRFL 88
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AE++D S ++ FGATV++ + +K+ Y IVG EA+ G +S SP
Sbjct: 89 SRRLDSAEIVDPSQRGECHQVFFGATVTVCNAQN-EKQTYSIVGMDEAEPGCGRISWISP 147
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+AL+ GD+++++ PGG + E+++V +
Sbjct: 148 LAKALLKAHEGDVVTLHTPGGVEELEVIEVHY 179
>gi|145589258|ref|YP_001155855.1| transcription elongation factor GreB [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047664|gb|ABP34291.1| transcription elongation factor GreB [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 166
Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 87/166 (52%), Gaps = 8/166 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K +T G ++I+ EL +RP ++K + A + GD SEN +Y K+ +
Sbjct: 1 MEEKNYITPVGHERIKTELLQLLNLDRPEVVKVVHWAASNGDRSENGDYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTM-SGDR----IAFGATVS---LVEKNSGDKKNYQIVGDQE 112
R+ L + A V+D S SGD+ I FGATV+ L ++G + IVG E
Sbjct: 61 RRIRFLNQRLEFAVVVDNSARKSGDQDAEQIFFGATVTYSPLKGADAGKEITITIVGVDE 120
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
D++ VS SPIA+ALI LGD + + P G EIL+V ++
Sbjct: 121 VDLEKNHVSWVSPIAKALIKARLGDCVKIQTPTGPTEIEILEVQYL 166
>gi|219685364|ref|ZP_03540183.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia garinii Far04]
gi|219673137|gb|EED30157.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia garinii Far04]
Length = 900
Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 68/126 (53%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGD 137
+ GD
Sbjct: 871 DSKEGD 876
>gi|219684768|ref|ZP_03539710.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia garinii PBr]
gi|219671713|gb|EED28768.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia garinii PBr]
Length = 900
Score = 77.4 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 68/126 (53%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGD 137
+ GD
Sbjct: 871 DSKEGD 876
>gi|51598396|ref|YP_072584.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
garinii PBi]
gi|51572967|gb|AAU06992.1| transcription elongation factor [Borrelia garinii PBi]
Length = 900
Score = 77.0 bits (188), Expect = 7e-13, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 68/126 (53%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGD 137
+ GD
Sbjct: 871 DSKEGD 876
>gi|254443766|ref|ZP_05057242.1| transcription elongation factor GreA domain protein
[Verrucomicrobiae bacterium DG1235]
gi|198258074|gb|EDY82382.1| transcription elongation factor GreA domain protein
[Verrucomicrobiae bacterium DG1235]
Length = 617
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 72/128 (56%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P +AI+EAR GDL EN+EY+ AK+ Q + R LE I RA++ D ++ + + I
Sbjct: 483 PENSQAIAEARELGDLKENSEYKMAKQDQQILMSRRNLLEADIKRAQITDFTSATTETIG 542
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
G V+L ++ G + Y ++G + D + ++S +P+ ++++GK +GD +SV E
Sbjct: 543 IGNIVTLKDEKDGSEVTYTLLGAWDGDPDNFIISYLTPLGKSMLGKRIGDEVSVTVGSTE 602
Query: 148 KTYEILQV 155
I +
Sbjct: 603 NKLTITDI 610
>gi|301628310|ref|XP_002943300.1| PREDICTED: transcription elongation factor greB-like [Xenopus
(Silurana) tropicalis]
Length = 154
Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G + ++ EL + ERP+++ +S A GD SEN +Y K+ + R+ L
Sbjct: 1 MTPAGLESLRSELNHLSRSERPKVVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRIRFL 60
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I A+V+D + G +R+ FGATV+ + +++ +VG EAD++ +S SP
Sbjct: 61 TKRIESAKVVDPAEQQGLERVFFGATVTYANQRD-EERTVTLVGVDEADMEQSKISWRSP 119
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL +GD + + P G + E++ + +
Sbjct: 120 VARALFKAGIGDEVLLRTPAGTERLEVIAIAY 151
>gi|321310951|ref|YP_004193280.1| transcription elongation factor GreA [Mycoplasma haemofelis str.
Langford 1]
gi|319802795|emb|CBY93441.1| transcription elongation factor GreA [Mycoplasma haemofelis str.
Langford 1]
Length = 157
Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + + ++ E +R +I+ I ARA GDLSENA+Y+ A + Q + EGR+AE+
Sbjct: 6 LTVESLENLKAEYNNLVNVDRVEVIEEIKAARANGDLSENADYETALDKQKVIEGRIAEI 65
Query: 67 ENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ I+ E+I + +T S + G+ V ++E + + Y+I+G + + G +S
Sbjct: 66 KAILDNHEIISSEGTTDSSGVVKIGSKVKILEMDENVEFEYEILGSVDNNPSMGRISNEC 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+A+A++GK+ G+++ V +ILQ+L
Sbjct: 126 PLAKAMLGKKAGEVVEVQNIAVPYKVKILQIL 157
>gi|207110701|ref|ZP_03244863.1| transcription elongation factor GreA [Helicobacter pylori
HPKX_438_CA4C1]
Length = 84
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 56/84 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDR 85
R+ +L I+ A+VID S ++ ++
Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHNK 84
>gi|297243708|ref|ZP_06927639.1| YhbC family protein [Gardnerella vaginalis AMD]
gi|296888459|gb|EFH27200.1| YhbC family protein [Gardnerella vaginalis AMD]
Length = 159
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 84/144 (58%), Gaps = 7/144 (4%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q NEGR+
Sbjct: 7 ILLTQEAYDKLKEELAHREGEYREEITERIAAARAEGDLSENGGYQAAREEQGKNEGRIN 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSI 122
EL + A++++ + G+ V+L + +G + Y ++G ++ V + ++S
Sbjct: 67 ELIVKLRNAKILEAP--KDGTVGNGSLVTL--ELAGREMTY-VLGSRDIAVATDYDVISP 121
Query: 123 SSPIARALIGKELGDIISVNAPGG 146
SPI A++G GD +S AP G
Sbjct: 122 ESPIGAAIMGAHTGDTVSYAAPNG 145
>gi|223986210|ref|ZP_03636228.1| hypothetical protein HOLDEFILI_03538 [Holdemania filiformis DSM
12042]
gi|223961824|gb|EEF66318.1| hypothetical protein HOLDEFILI_03538 [Holdemania filiformis DSM
12042]
Length = 156
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
DKI VT +G +++++E R +I+ + ARA GDLSENA+Y AA++ Q E R
Sbjct: 4 DKIYVTQEGLEELKKEQENLIHVVRQEVIEDLKAARAQGDLSENADYDAARDRQAQVEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE ++ E+ID S G+TV + E ++ + IVG EAD +G +S
Sbjct: 64 IRELEVMLNNIEIIDDKQGSVRVAKIGSTVKIEELDTHQIDEFTIVGSVEADPLNGKLSN 123
Query: 123 SSPIARALIGKELGDIIS--VNAPGGEKTYEI 152
+P+A A++ ++G + V+ P K EI
Sbjct: 124 VTPLAEAILEHKVGQTVEVLVDEPYQVKILEI 155
>gi|199597924|ref|ZP_03211349.1| transcription elongation factor GreA [Lactobacillus rhamnosus
HN001]
gi|229550850|ref|ZP_04439575.1| transcription elongation factor GreA [Lactobacillus rhamnosus
LMS2-1]
gi|258507251|ref|YP_003170002.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG]
gi|258538438|ref|YP_003172937.1| transcription elongation factor GreA [Lactobacillus rhamnosus Lc
705]
gi|199591181|gb|EDY99262.1| transcription elongation factor GreA [Lactobacillus rhamnosus
HN001]
gi|229315800|gb|EEN81773.1| transcription elongation factor GreA [Lactobacillus rhamnosus
LMS2-1]
gi|257147178|emb|CAR86151.1| Transcription elongation factor [Lactobacillus rhamnosus GG]
gi|257150114|emb|CAR89086.1| Transcription elongation factor [Lactobacillus rhamnosus Lc 705]
gi|259648617|dbj|BAI40779.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG]
Length = 165
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 9/154 (5%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
MV +T G ++QE+ + RP IK ++EA A GD SENAEY AAK EL+ L
Sbjct: 1 MVTYHEITPAGLANLKQEVA-DLKAIRPAKIKNLAEAAALGDRSENAEYSAAKRELRQL- 58
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ L+ +I A+V +T + +A G V+L + D+ Y++VG EA + +
Sbjct: 59 EGRLRYLDKLIRYAKV---TTPAAANLADIGNWVTLEFDDDQDEDTYELVGPAEAGMGAA 115
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
++I+SP+ A+ +GD ++V AP G TY++
Sbjct: 116 KLAINSPLGAAVRRHHVGDTVTVTAPSG--TYQV 147
>gi|156740036|ref|YP_001430165.1| transcription elongation factor GreA [Roseiflexus castenholzii DSM
13941]
gi|229485906|sp|A7NFC5|GREA_ROSCS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|156231364|gb|ABU56147.1| transcription elongation factor GreA [Roseiflexus castenholzii DSM
13941]
Length = 157
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T G +++ EL + R I + I+ A+ GD+SE+ EY+ AK Q
Sbjct: 1 MSDKPAYLTRDGRARLEAELEELVTKGRKEIAERINAAKELGDISESGEYEDAKNQQAHL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ E+++I+ RA++ID S + G+ V++ +++ + IVG EA G
Sbjct: 61 EGRIREIKSILARAQIIDEENGSNHEVRIGSRVTVRIDGEHEEETWTIVGSTEAKPSEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPI AL+GK ++V P G IL +
Sbjct: 121 ISNESPIGAALLGKRPSQQVTVETPSGTMKLTILNI 156
>gi|150015636|ref|YP_001307890.1| GreA/GreB family elongation factor [Clostridium beijerinckii NCIMB
8052]
gi|149902101|gb|ABR32934.1| GreA/GreB family elongation factor [Clostridium beijerinckii NCIMB
8052]
Length = 154
Score = 76.6 bits (187), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 8/154 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+++EL +R +R I K A A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENIKKLREELDYRMTVKRAEIAKEKLVAAAHGDRSENAEYKEACRNYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFG----ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+I+ A VID ++ D+ G A + VE + D+ +V + D ++ ++SI
Sbjct: 65 LTMISTATVIDDGSI--DKSVLGINSKARIRFVEDD--DEVVVTLVTTMDLDPENMIISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL G + GDI+ VNAPG + + EIL+VL
Sbjct: 121 ESDLGKALSGNKAGDIVEVNAPGEKYSVEILEVL 154
>gi|226941107|ref|YP_002796181.1| transcription elongation factor GreB [Laribacter hongkongensis
HLHK9]
gi|226716034|gb|ACO75172.1| GreB [Laribacter hongkongensis HLHK9]
Length = 185
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++ EL ERP + + ++ A GD SEN +Y K + R+ L
Sbjct: 31 LTPAGWQRMKDELYRLVNHERPEVTQVVNWAAGNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D D++ FGATV ++ + G ++ IVG E D+ G +S SP
Sbjct: 91 TKRLEIAEVVDPERREATDQVFFGATVVML-RGDGSEQTVSIVGVDELDLSRGHISWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IAR L+ GD++ P GE+ EIL+V
Sbjct: 150 IARTLLKAREGDVVWFRGPDGEEEIEILEV 179
>gi|119478768|ref|ZP_01618607.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2143]
gi|119448347|gb|EAW29602.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2143]
Length = 167
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G ++ E+ + ERP + + EA GD SEN +Y K + R+ L
Sbjct: 15 ITPEGEKALRAEVYQLWKIERPEVTAVVHEAAKNGDRSENGDYIYGKRRMREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ E++D + D I FGA V+ VE + K++Y+IVG E D+ S +S+ SP+
Sbjct: 75 TKRLDSVEIVDRTPADKDIIYFGAWVT-VEDEAESKQSYRIVGPDEFDLASNKLSMDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+AL+GK + D I P G++ I +V +
Sbjct: 134 AKALLGKRVEDEILFKTPEGQRELYISEVWY 164
>gi|94499115|ref|ZP_01305653.1| transcription elongation factor GreB [Oceanobacter sp. RED65]
gi|94428747|gb|EAT13719.1| transcription elongation factor GreB [Oceanobacter sp. RED65]
Length = 163
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 76/140 (54%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G ++ EL + + ERP++ + + +A A GD SENAEY K+ + R+ L
Sbjct: 7 ITPEGEQTLKDELDYLWRTERPKVTQQVKDAAALGDRSENAEYIYGKKRLREIDRRVRFL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + V+ ++ F A + +E G Y+IVG E D + +SI+SP+
Sbjct: 67 SKRLEKLTVVRDKPADQTKVFFSAWIQ-IENEQGQVHIYRIVGPDEIDHRPEYISINSPV 125
Query: 127 ARALIGKELGDIISVNAPGG 146
A+AL+GK+ GD ++V P G
Sbjct: 126 AKALLGKQAGDDVAVQTPKG 145
>gi|227497804|ref|ZP_03927989.1| transcription elongation factor GreA [Actinomyces urogenitalis DSM
15434]
gi|226832764|gb|EEH65147.1| transcription elongation factor GreA [Actinomyces urogenitalis DSM
15434]
Length = 165
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/149 (34%), Positives = 81/149 (54%), Gaps = 15/149 (10%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D++ EL RQ+ +R I + + AR GDL ENA Y AA+E LNE R+A+L
Sbjct: 14 LTKDAYDRLTAELARRQEVDRKEIAQRVEAARQEGDLRENAGYHAAREEAALNEARIAQL 73
Query: 67 ENIITRA---EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSG--L 119
++ +A EV D T+S ++V G K+ +G QE ADV G +
Sbjct: 74 TELLEKAEIGEVADDGTVSAG--------TIVTAKIGAKEQVFALGGQEITADVPEGVKV 125
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK 148
S +P+ +AL+G + G+ +S AP G++
Sbjct: 126 FSPDAPLGKALMGHKAGETVSYQAPNGKE 154
>gi|239621777|ref|ZP_04664808.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239514968|gb|EEQ54835.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 159
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 87/142 (61%), Gaps = 7/142 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEGR+ EL
Sbjct: 9 LTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAARETQSKNEGRITEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ +++I+ + + G+ V+ +E N G++ Y ++G ++ A +++ S
Sbjct: 69 TVKLRDSKIIENAPEG--TVGEGSVVT-IELN-GNEMTY-VLGSRDIVAGTDYDIMTPDS 123
Query: 125 PIARALIGKELGDIISVNAPGG 146
PI +A+ G ++GD++S AP G
Sbjct: 124 PIGKAIEGAKVGDVVSYTAPNG 145
>gi|224534276|ref|ZP_03674854.1| transcription elongation factor GreA [Borrelia spielmanii A14S]
gi|224514378|gb|EEF84694.1| transcription elongation factor GreA [Borrelia spielmanii A14S]
Length = 900
Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 67/126 (53%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G + Y I+G E++ G++S SP L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEITGKDETYLILGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGD 137
+ GD
Sbjct: 871 DSKEGD 876
>gi|283783053|ref|YP_003373807.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Gardnerella vaginalis 409-05]
gi|298253524|ref|ZP_06977314.1| YhbC family protein [Gardnerella vaginalis 5-1]
gi|283441369|gb|ADB13835.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Gardnerella vaginalis 409-05]
gi|297532291|gb|EFH71179.1| YhbC family protein [Gardnerella vaginalis 5-1]
Length = 159
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 84/144 (58%), Gaps = 7/144 (4%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q NEGR+
Sbjct: 7 ILLTQEAYDKLKEELAHREGEYREEITERIAAARAEGDLSENGGYQAAREEQGKNEGRIN 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSI 122
EL + A++++ + G+ V+L + +G + Y ++G ++ V + ++S
Sbjct: 67 ELIVKLRNAKILEAP--KDGTVGNGSLVTL--ELAGREMTY-VLGSRDIAVATDYDVISP 121
Query: 123 SSPIARALIGKELGDIISVNAPGG 146
SPI A++G GD +S AP G
Sbjct: 122 ESPIGAAIMGAHAGDTVSYAAPNG 145
>gi|83313517|ref|YP_423781.1| transcription elongation factor GreB [Magnetospirillum magneticum
AMB-1]
gi|82948358|dbj|BAE53222.1| Transcription elongation factor [Magnetospirillum magneticum AMB-1]
Length = 182
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 4/150 (2%)
Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
+GF ++ EL + ERP++++ +S A GD SEN +Y K+ + R+ L
Sbjct: 33 QGFAALKAELSHLHKIERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRIRFLTKR 92
Query: 70 ITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGLVSISSPIA 127
+ A V+D D+I FGATV+ N+ D++ IVG EAD++ GL+S SP+A
Sbjct: 93 MESAHVVDPEQQKKRDQIFFGATVTYA--NARDEEITVTIVGIDEADLEKGLISWISPVA 150
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157
RAL+ GD + V P G + E++ + +
Sbjct: 151 RALLKAAEGDSVPVRTPSGVEMIEVVAISY 180
>gi|187934761|ref|YP_001886308.1| transcription elongation factor GreA [Clostridium botulinum B str.
Eklund 17B]
gi|187722914|gb|ACD24135.1| transcription elongation factor GreA [Clostridium botulinum B str.
Eklund 17B]
Length = 154
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 79/150 (52%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +++EL +R +R I K A A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENMKNLREELDYRLTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
N+I+ A +ID T+ + + + D+ +V + D ++ +SI S +
Sbjct: 65 MNMISTATIIDSETIDKSVLGINSKAKIKFIEDEDETIITLVTTMDLDPEAMRISIESDL 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+AL GK+ GDI+ VNAPG EIL++L
Sbjct: 125 GKALTGKKQGDIVEVNAPGENYKVEILEIL 154
>gi|111114955|ref|YP_709573.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
afzelii PKo]
gi|216263923|ref|ZP_03435917.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia afzelii ACA-1]
gi|110890229|gb|ABH01397.1| transcription elongation factor [Borrelia afzelii PKo]
gi|215979967|gb|EEC20789.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia afzelii ACA-1]
Length = 900
Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/126 (34%), Positives = 67/126 (53%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVIILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGD 137
GD
Sbjct: 871 DSREGD 876
>gi|291456474|ref|ZP_06595864.1| putative transcription elongation factor GreA [Bifidobacterium
breve DSM 20213]
gi|291381751|gb|EFE89269.1| putative transcription elongation factor GreA [Bifidobacterium
breve DSM 20213]
Length = 159
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 88/144 (61%), Gaps = 11/144 (7%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEGR+ EL
Sbjct: 9 LTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSKNEGRITEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----LVSI 122
+ +++I+ + + G+ V+ +E N G++ Y ++G + D+ +G +++
Sbjct: 69 TVKLRDSKIIENAPEG--TVGNGSVVT-IELN-GNEMTY-VLGSR--DIVAGTDYEIMTP 121
Query: 123 SSPIARALIGKELGDIISVNAPGG 146
SPI RA+ G ++GD +S AP G
Sbjct: 122 DSPIGRAIEGAKVGDTVSYTAPNG 145
>gi|23465584|ref|NP_696187.1| transcription elongation factor GreA [Bifidobacterium longum
NCC2705]
gi|189439631|ref|YP_001954712.1| transcription elongation factor [Bifidobacterium longum DJO10A]
gi|213692643|ref|YP_002323229.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|296453851|ref|YP_003660994.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp.
longum JDM301]
gi|312133029|ref|YP_004000368.1| grea [Bifidobacterium longum subsp. longum BBMN68]
gi|317481865|ref|ZP_07940892.1| prokaryotic transcription elongation factor [Bifidobacterium sp.
12_1_47BFAA]
gi|322688807|ref|YP_004208541.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
infantis 157F]
gi|322690797|ref|YP_004220367.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
longum JCM 1217]
gi|23326251|gb|AAN24823.1| transcription elongation factor GreA [Bifidobacterium longum
NCC2705]
gi|189428066|gb|ACD98214.1| Transcription elongation factor [Bifidobacterium longum DJO10A]
gi|213524104|gb|ACJ52851.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|291517127|emb|CBK70743.1| Transcription elongation factor [Bifidobacterium longum subsp.
longum F8]
gi|296183282|gb|ADH00164.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp.
longum JDM301]
gi|311774017|gb|ADQ03505.1| GreA [Bifidobacterium longum subsp. longum BBMN68]
gi|316916656|gb|EFV38051.1| prokaryotic transcription elongation factor [Bifidobacterium sp.
12_1_47BFAA]
gi|320455653|dbj|BAJ66275.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320458793|dbj|BAJ69414.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320460143|dbj|BAJ70763.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
infantis 157F]
Length = 159
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 87/142 (61%), Gaps = 7/142 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEGR+ EL
Sbjct: 9 LTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSKNEGRITEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ +++I+ + + G+ V+ +E N G++ Y ++G ++ A +++ S
Sbjct: 69 TVKLRDSKIIENAPEG--TVGEGSVVT-IELN-GNEMTY-VLGSRDIVAGTDYDIMTPDS 123
Query: 125 PIARALIGKELGDIISVNAPGG 146
PI +A+ G ++GD++S AP G
Sbjct: 124 PIGKAIEGAKVGDVVSYTAPNG 145
>gi|216264351|ref|ZP_03436343.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia burgdorferi 156a]
gi|221217376|ref|ZP_03588847.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia burgdorferi 72a]
gi|224533979|ref|ZP_03674563.1| transcription elongation factor GreA [Borrelia burgdorferi
CA-11.2a]
gi|215980824|gb|EEC21631.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia burgdorferi 156a]
gi|221192654|gb|EEE18870.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia burgdorferi 72a]
gi|224512815|gb|EEF83182.1| transcription elongation factor GreA [Borrelia burgdorferi
CA-11.2a]
Length = 901
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%)
Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 751 SLNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEI 810
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L
Sbjct: 811 ENAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENL 870
Query: 131 IGKELGD 137
+ GD
Sbjct: 871 LDSREGD 877
>gi|319638512|ref|ZP_07993274.1| transcription elongation factor greB [Neisseria mucosa C102]
gi|317400261|gb|EFV80920.1| transcription elongation factor greB [Neisseria mucosa C102]
Length = 163
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L
Sbjct: 9 ITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D+I FGATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLEAAVVVDPEAREATDQIFFGATVGLL-RGDGREQTVKIVGVDEIDTAKNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR+LI GD + +N P G++ EIL V +I
Sbjct: 128 LARSLIKAREGDEVVLNTPEGQEVIEILSVEYI 160
>gi|254669933|emb|CBA04519.1| transcription elongation factor GreA [Neisseria meningitidis
alpha153]
Length = 72
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
FG TV+L + + + YQIVG+ EAD++ G + + SPIARALIGKE GD V APGG
Sbjct: 2 FGTTVTLEDLETEEHVTYQIVGEDEADIKQGKIYVGSPIARALIGKEEGDTAEVQAPGGV 61
Query: 148 KTYEILQVLWI 158
+ Y+I++V +I
Sbjct: 62 REYDIIEVRYI 72
>gi|325474603|gb|EGC77789.1| transcription elongation factor [Treponema denticola F0402]
Length = 901
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 82/149 (55%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT+K D +EL + + P+ K I A + GDL ENAEY+AAKE Q + L
Sbjct: 747 VTAKMLDLKNKELIEIRDVKIPQNAKDIGFALSLGDLRENAEYKAAKEEQTRLGNALTRL 806
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ + RA++ D +T + ++ FG+ V ++ + ++ Y I+G E+D +G++S SP+
Sbjct: 807 QDELDRAQIFDPTTATAKKVYFGSKVKILNNLTNQEEEYTILGPWESDPANGIISYMSPL 866
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
L + G+ + +++Y+I+ +
Sbjct: 867 GNGLFNHKKGEEVEFEVNDEKRSYKIIDI 895
>gi|221135013|ref|ZP_03561316.1| transcription elongation factor [Glaciecola sp. HTCC2999]
Length = 159
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 74/149 (49%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++E + + ER I K ++ A GD S+NA+YQ K R+ L
Sbjct: 8 ITPNGYRLLKEEEDYLWRVERHEITKKVTWAAGLGDRSDNADYQTNKRRLRQIHSRVRFL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ S ++ FGA V+L E G+ K QIVG E + SI SP+
Sbjct: 68 RKRMEALTVVSPSPEQVGKVYFGAWVTL-ETEEGEVKKVQIVGSDEIYKHTSPCSIDSPL 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARA++GK + D VN P G Y IL +
Sbjct: 127 ARAMVGKTIDDEAVVNMPDGPIYYTILAI 155
>gi|182418041|ref|ZP_02949346.1| transcription elongation factor GreA [Clostridium butyricum 5521]
gi|237666078|ref|ZP_04526066.1| GreA/GreB family elongation factor [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182378096|gb|EDT75632.1| transcription elongation factor GreA [Clostridium butyricum 5521]
gi|237659025|gb|EEP56577.1| GreA/GreB family elongation factor [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 154
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 81/150 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+Q EL +R +R I K A A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTQENMKKLQDELEYRMTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+I+ A VID + + + + +++ +V + D ++ ++SI S +
Sbjct: 65 MTMISTATVIDDEDQDKSVLGINSKAKVKFIDDDEEEIITLVTTMDLDPENMMISIESDL 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ALIGK+ G+I+ V APG + + EIL++L
Sbjct: 125 GKALIGKKAGEIVEVEAPGDKYSVEILEIL 154
>gi|328480203|gb|EGF49134.1| transcription elongation factor GreA [Lactobacillus rhamnosus MTCC
5462]
Length = 165
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 9/154 (5%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
MV +T G ++QE+ + RP IK ++EA A GD SENAEY AAK EL+ L
Sbjct: 1 MVTYHEITPAGLANLKQEVA-DLKAIRPAKIKNLAEAAALGDRSENAEYSAAKRELRQL- 58
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ L+ +I A+V +T + +A G V+L + D+ Y++VG EA + +
Sbjct: 59 EGRLRYLDKLIRYAKV---TTPAAANLADIGNWVTLKFDDDQDEDTYELVGPAEAGMGAA 115
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
++I+SP+ A+ +GD ++V AP G TY++
Sbjct: 116 KLAINSPLGAAVRRHYVGDTVTVTAPSG--TYQV 147
>gi|325142644|gb|EGC65035.1| transcription elongation factor greA [Neisseria meningitidis
961-5945]
Length = 72
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 56/72 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRA 73
R++ELE+ ++ A
Sbjct: 61 RISELEHKLSVA 72
>gi|300087971|ref|YP_003758493.1| GreA/GreB family elongation factor [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527704|gb|ADJ26172.1| GreA/GreB family elongation factor [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 271
Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 78/132 (59%), Gaps = 1/132 (0%)
Query: 22 RQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81
R +++R +++ I +A A DL ENA Y AA+E + +G++AELE ++ +A V +
Sbjct: 136 RLKDKRVEVVEEIKKAAADKDLKENAPYHAAREEKAKLDGKIAELEMMLKQAVVQEKHMT 195
Query: 82 SGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
SG + + G V++ SG +++V +E D ++G +S +SPI +A++G+ +GD +
Sbjct: 196 SGKKKVEVGRQVTVTNLASGQVTKFKLVIAREVDPKNGCISPASPIGKAIMGRYIGDTVE 255
Query: 141 VNAPGGEKTYEI 152
V AP Y I
Sbjct: 256 VVAPACTNRYCI 267
>gi|42528195|ref|NP_973293.1| transcript cleavage factor/unknown domain fusion protein [Treponema
denticola ATCC 35405]
gi|41819465|gb|AAS13212.1| transcription elongation protein, GreA/GreB family [Treponema
denticola ATCC 35405]
Length = 901
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 84/154 (54%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V + VT+K D +EL + + P+ K I A + GDL ENAEY+AAKE Q
Sbjct: 742 VHGLIVTAKMLDLKNKELIEIRDVKIPQNAKDIGFALSLGDLRENAEYKAAKEEQTRLGN 801
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ L++ + RA++ D +T + ++ FG+ V ++ + ++ Y I+G E+D +G++S
Sbjct: 802 ALTRLQDELDRAQIFDPTTATAKKVYFGSKVKILNNLTNQEEEYTILGPWESDPANGIIS 861
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ L + G+ + +++Y+I+ +
Sbjct: 862 YMSPLGNGLFNHKKGEEVEFEVNDEKRSYKIIDI 895
>gi|257093983|ref|YP_003167624.1| transcription elongation factor GreB [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257046507|gb|ACV35695.1| transcription elongation factor GreB [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 188
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL + ERP+++ + A + GD SENA+Y K + R+ L
Sbjct: 33 ITPGGHARLRSELEHLLRVERPQVVGVVQWAASNGDRSENADYIYGKRRLREIDRRIRFL 92
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AE++D + + +++ FGATV++ ++ G + YQIVG E D G +S SP
Sbjct: 93 TRRLDLAEIVDPARRENTEQVFFGATVTICDEQ-GLENTYQIVGVDETDSARGHISWVSP 151
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ARAL+ GD + ++P G + E++ V
Sbjct: 152 LARALLKAREGDTVRFHSPLGWRQVEVVAV 181
>gi|192360004|ref|YP_001981507.1| transcription elongation factor GreB [Cellvibrio japonicus Ueda107]
gi|190686169|gb|ACE83847.1| transcription elongation factor GreB [Cellvibrio japonicus Ueda107]
Length = 157
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GFD +Q+EL + ERP + K +S A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITRQGFDDLQKELDELWRVERPDVTKKVSWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V++ ++ FGA V VE + G +++VG E + +SI SP+
Sbjct: 66 RKCLENLKVVEYRPEQEGKVFFGAWVE-VENDEGKTLTFRVVGYDEIFNRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ K + D V G T+ I
Sbjct: 125 ARALLKKAVDDEAIVATEAGTVTWYI 150
>gi|28377155|ref|NP_784047.1| transcription elongation factor GreA [Lactobacillus plantarum
WCFS1]
gi|38257536|sp|Q88ZS9|GREA1_LACPL RecName: Full=Transcription elongation factor greA 1; AltName:
Full=Transcript cleavage factor greA 1
gi|28269986|emb|CAD62886.1| transcription elongation factor GreA [Lactobacillus plantarum
WCFS1]
Length = 156
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G+ I+QE+ +Q+ RP I+ ++ A A GD SENAEY +AK E R+ L
Sbjct: 8 MTAAGYHAIEQEIEDLKQQ-RPERIRILAAAAALGDRSENAEYSSAKRDLGRLESRLRYL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A+++ D++ G V++ + D+ YQ+VG QEA+++ +S +SPI
Sbjct: 67 NKQLQYAQIV--QPADNDQLDIGKFVTIEFLDDHDQITYQLVGKQEANLEQQKISFTSPI 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL + D+++VNAP G +++ V
Sbjct: 125 GQALANHTVDDVVTVNAPNGAYQVKVIAV 153
>gi|226321957|ref|ZP_03797482.1| transcription elongation factor GreA [Borrelia burgdorferi Bol26]
gi|226232547|gb|EEH31301.1| transcription elongation factor GreA [Borrelia burgdorferi Bol26]
Length = 901
Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 67/126 (53%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + + ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTDKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGD 137
GD
Sbjct: 872 DSREGD 877
>gi|227546182|ref|ZP_03976231.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|227213163|gb|EEI81035.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 159
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 87/142 (61%), Gaps = 7/142 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEGR+ EL
Sbjct: 9 LTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSKNEGRIIEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ +++I+ + + G+ V+ +E N G++ Y ++G ++ A +++ S
Sbjct: 69 TVKLRDSKIIENAPEG--TVGEGSVVT-IELN-GNEMTY-VLGSRDIVAGTDYDIMTPDS 123
Query: 125 PIARALIGKELGDIISVNAPGG 146
PI +A+ G ++GD++S AP G
Sbjct: 124 PIGKAIEGAKVGDVVSYTAPNG 145
>gi|302874290|ref|YP_003842923.1| GreA/GreB family elongation factor [Clostridium cellulovorans 743B]
gi|307689446|ref|ZP_07631892.1| transcription elongation factor GreA [Clostridium cellulovorans
743B]
gi|302577147|gb|ADL51159.1| GreA/GreB family elongation factor [Clostridium cellulovorans 743B]
Length = 154
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/152 (34%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+Q+EL +R +R I K A A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTLENMKKLQEELEYRMTVKRAEIAKEKLIAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFG--ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+I+ A +ID T+ + A V +E + D +V + D ++ +SI S
Sbjct: 65 LTMISTATLIDEHTVDKSTLGINTKAKVRFIEDDYEDV--LTLVTTMDLDPENMYISIES 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +AL GK+ G+I++VNAP T EIL++L
Sbjct: 123 DLGKALSGKKAGEIVTVNAPEDIYTVEILEIL 154
>gi|270158321|ref|ZP_06186978.1| transcription elongation factor GreB [Legionella longbeachae
D-4968]
gi|289163433|ref|YP_003453571.1| transcription elongation factor [Legionella longbeachae NSW150]
gi|269990346|gb|EEZ96600.1| transcription elongation factor GreB [Legionella longbeachae
D-4968]
gi|288856606|emb|CBJ10413.1| transcription elongation factor [Legionella longbeachae NSW150]
Length = 181
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T GF +Q ELR ERP I+K +S A + GD SEN +Y K+ + R+ L
Sbjct: 29 MTPNGFAMLQAELRNLISNERPEIVKVVSWAASNGDRSENGDYIYGKKRLREIDRRIRYL 88
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+++D G ++ FGATV + +N G+ +IVG EAD+ G +S SP
Sbjct: 89 TKRLESAQIVDPKLQVGLTQVFFGATVQYINEN-GESHCVKIVGLDEADINEGKISWVSP 147
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+A+ L+ ++GD ++ E + + +I
Sbjct: 148 LAKTLLKAKVGDHRTLRVGDKECHLTVTHISYI 180
>gi|218461137|ref|ZP_03501228.1| hypothetical protein RetlK5_17212 [Rhizobium etli Kim 5]
Length = 44
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 41/44 (93%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS 44
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLS
Sbjct: 1 MVEKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLS 44
>gi|300766895|ref|ZP_07076808.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|300495433|gb|EFK30588.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
Length = 187
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+TS G+ I+QE+ +Q+ RP I+ ++ A A GD SENAEY +AK E R+ L
Sbjct: 39 MTSTGYHAIEQEIEDLKQQ-RPERIRILAAAAALGDRSENAEYSSAKRDLGRLESRLRYL 97
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A+++ +++ G V++ + D+ YQ+VG QEA+++ +S +SPI
Sbjct: 98 NKQLQYAQIV--QPADNNQLDIGKFVTIEFLDDHDQITYQLVGKQEANLEQQKISFTSPI 155
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL + D+++VNAP G +++ V
Sbjct: 156 GQALANHTVDDVVTVNAPNGAYQVKVIAV 184
>gi|226322649|ref|ZP_03798167.1| hypothetical protein COPCOM_00421 [Coprococcus comes ATCC 27758]
gi|225208986|gb|EEG91340.1| hypothetical protein COPCOM_00421 [Coprococcus comes ATCC 27758]
Length = 167
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 80/147 (54%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KI++E++ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTESDVKKIEEEIQHRKHVIRKEAIEAVKEARAQGDLSENFEYHAAKKYKNQNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ AE++ ++ G V++ +++ Y++V + +S SPI
Sbjct: 65 ERMLKNAEIVSDTSEEG-VAGINNRVTVYFPEDDEEETYKLVTSIRGNSIHNYISTESPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153
+A+ G + G+ + V + +YE++
Sbjct: 124 GKAIFGHKAGETVKVKV-SDDYSYELV 149
>gi|94971605|ref|YP_593653.1| GreA/GreB family elongation factor [Candidatus Koribacter
versatilis Ellin345]
gi|94553655|gb|ABF43579.1| GreA/GreB family elongation factor [Candidatus Koribacter
versatilis Ellin345]
Length = 212
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 5/155 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++++ E R+ ERP +++ + A GD S+NA+Y+ K +GR+ L
Sbjct: 22 ITPGGLERLKDEHRFLLTRERPAVVEVVQWAAGNGDRSDNADYRYGKRRLRQIDGRIRFL 81
Query: 67 ENIITRAEVIDI----STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
I AE++D + + R FGATV E +G ++ IVG E D+ +S
Sbjct: 82 SKRIEAAELVDPERPRTGQAATRAFFGATVRY-ENAAGVERVVSIVGVDEVDLSRNHISW 140
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ RAL GD + + APGG + +L+V +
Sbjct: 141 MSPLGRALTKSAEGDSVVLKAPGGTEELTVLEVRY 175
>gi|217976361|ref|YP_002360508.1| transcription elongation factor GreB [Methylocella silvestris BL2]
gi|217501737|gb|ACK49146.1| transcription elongation factor GreB [Methylocella silvestris BL2]
Length = 181
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 84/153 (54%), Gaps = 4/153 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G ++Q E + ERP+I++ ++ A GD SEN +Y K + RM L
Sbjct: 31 ITPEGLRRMQDEFDRLHRIERPKIVETVTWAAGNGDRSENGDYIYGKRRLREIDRRMRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGLVSISS 124
+ AEV+D + + DR+ FGA V +N+ ++ K +IVG EA + VS S
Sbjct: 91 RKRMEIAEVVDPARQTNRDRVFFGAKVEY--RNARNEMKTLRIVGVDEARSELSEVSWIS 148
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
PIA++L+ E GD++ V P G + EI+++ +
Sbjct: 149 PIAKSLLKAEEGDVVEVKTPKGTERIEIVKISY 181
>gi|91787228|ref|YP_548180.1| GreA/GreB family elongation factor [Polaromonas sp. JS666]
gi|91696453|gb|ABE43282.1| GreA/GreB family elongation factor [Polaromonas sp. JS666]
Length = 190
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+++++ EL ERP++++ + A + GD SEN +Y K+ + R+ L
Sbjct: 29 ITPVGYERLRAELLDLIDNERPKVVEIVHWAASNGDRSENGDYHYGKKRLREIDRRIRFL 88
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AE+ + S G D++ FGATV+ V+ + G+++ I+G EA+ G +S SP
Sbjct: 89 TQRLEIAEISNPSIHHGSDQVFFGATVTYVD-DRGEERTVTILGIDEANSALGQISWISP 147
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+ +GD +++ P G + E+L+V
Sbjct: 148 AARALLKSRVGDEVNLVTPQGLQVLEVLKV 177
>gi|319943395|ref|ZP_08017677.1| transcription elongation factor GreB [Lautropia mirabilis ATCC
51599]
gi|319743210|gb|EFV95615.1| transcription elongation factor GreB [Lautropia mirabilis ATCC
51599]
Length = 186
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 79/141 (56%), Gaps = 2/141 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL ERP +++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 32 ITRAGYQALRDELSHLLDVERPEVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I RAEV++ S G D++ FGATV+ E + G ++ QIVG E D +G +S SP
Sbjct: 92 IRRIDRAEVVEPSAHHGNDQVFFGATVTYSEPD-GTERRVQIVGVDETDPLAGKISWVSP 150
Query: 126 IARALIGKELGDIISVNAPGG 146
+ARALI GD +S+ P G
Sbjct: 151 VARALIKAREGDEVSLMTPQG 171
>gi|56459393|ref|YP_154674.1| GreB [Idiomarina loihiensis L2TR]
gi|56178403|gb|AAV81125.1| GreB [Idiomarina loihiensis L2TR]
Length = 159
Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K+QQEL + ER ++ +S A + GD SENA+Y+ K+ +GR+ L
Sbjct: 6 ITLGGYEKLQQELEHLWRVERRETVEKVSWAASLGDRSENADYKYNKQKLRKIDGRIRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ S ++ FGA V +E + + +QIVG E + VSI SP+
Sbjct: 66 TKRLEQVKVVYYSPQQDGKVFFGAWVE-IEDEEENVRAFQIVGPDEIYDRKDAVSIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ K++ D V G +T+ I
Sbjct: 125 ARALLKKQVDDEAEVTTQQGTRTWFI 150
>gi|226228266|ref|YP_002762372.1| transcription elongation factor GreA [Gemmatimonas aurantiaca T-27]
gi|226091457|dbj|BAH39902.1| transcription elongation factor GreA [Gemmatimonas aurantiaca T-27]
Length = 161
Score = 74.7 bits (182), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 71/125 (56%)
Query: 34 ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVS 93
I +A GDL EN+EY+AA E Q + R+ +L +T+ IDI+ + GDR+ G+ V
Sbjct: 28 IRKAVELGDLKENSEYKAALERQQFVQARLGQLTQRVTKLANIDITQIPGDRVGLGSKVI 87
Query: 94 LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
+ + S ++ Y++V ++ G V++ SPI RAL GK +G+ + P + +I+
Sbjct: 88 VEDLQSKARETYELVFGDAGELHDGHVTMGSPIGRALQGKSVGEEAILKLPTRIRKLQIV 147
Query: 154 QVLWI 158
++ I
Sbjct: 148 ELQTI 152
>gi|56478200|ref|YP_159789.1| transcription elongation factor GreB [Aromatoleum aromaticum EbN1]
gi|56314243|emb|CAI08888.1| transcription elongation factor [Aromatoleum aromaticum EbN1]
Length = 186
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 93/155 (60%), Gaps = 3/155 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ +++EL + ERP++++ ++ A + GD SEN +Y K+ + R+ L
Sbjct: 32 MTRRGYESLRRELDHLVRIERPKMVETVAWAASNGDRSENGDYIYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKN--YQIVGDQEADVQSGLVSIS 123
I AEV+D + D++ FGATVS+V+ +S D +QIVG EAD +G +S
Sbjct: 92 IKRIESAEVVDPADQREIDQVFFGATVSIVDVDSDDDSEQIWQIVGVDEADAGAGRISWI 151
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ GD++ +P G + E++++ ++
Sbjct: 152 SPLARALLKAREGDVVRFMSPAGPREIEVVEIRYV 186
>gi|331083573|ref|ZP_08332684.1| hypothetical protein HMPREF0992_01608 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330403784|gb|EGG83336.1| hypothetical protein HMPREF0992_01608 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 167
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KIQ E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTENDVKKIQAEIEYRKLTVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNKNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ AE++ + D + + ++ + + Y++V + +SI SP+
Sbjct: 65 ERMLKTAEIVSEDS-KADEAGMNNVIEVYFEDDDETETYKLVTSIRGNSLDNKISIESPL 123
Query: 127 ARALIGKELGDI--ISVNAPGG 146
+A++G GD + +N G
Sbjct: 124 GKAILGHREGDRVWVKINESAG 145
>gi|260587256|ref|ZP_05853169.1| transcription elongation factor GreA [Blautia hansenii DSM 20583]
gi|260542451|gb|EEX23020.1| transcription elongation factor GreA [Blautia hansenii DSM 20583]
Length = 169
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KIQ E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 7 LTENDVKKIQAEIEYRKLTVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNKNESRIRYL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ AE++ + D + + ++ + + Y++V + +SI SP+
Sbjct: 67 ERMLKTAEIVSEDS-KADEAGMNNVIEVYFEDDDETETYKLVTSIRGNSLDNKISIESPL 125
Query: 127 ARALIGKELGDI--ISVNAPGG 146
+A++G GD + +N G
Sbjct: 126 GKAILGHREGDRVWVKINESAG 147
>gi|167947983|ref|ZP_02535057.1| Prokaryotic transcription elongation factor GreA/GreB [Endoriftia
persephone 'Hot96_1+Hot96_2']
Length = 67
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 52/66 (78%)
Query: 92 VSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYE 151
+ ++E ++ ++ +QIVGD EAD++SGL+S+SSPIARALIGK GD +++ PGG + +E
Sbjct: 1 MDVIELDNNEEHTFQIVGDDEADIKSGLISVSSPIARALIGKAEGDEVNLETPGGLREFE 60
Query: 152 ILQVLW 157
+L++ +
Sbjct: 61 VLEIRY 66
>gi|307825791|ref|ZP_07656007.1| GreA/GreB family elongation factor [Methylobacter tundripaludum
SV96]
gi|307733099|gb|EFO03960.1| GreA/GreB family elongation factor [Methylobacter tundripaludum
SV96]
Length = 166
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 85/152 (55%), Gaps = 8/152 (5%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRM 63
+T +G+ ++ ELR W +++E + +A+S A A GD SENAEY KEL+ ++ R+
Sbjct: 15 ITPEGYQSLEIELRDLWTKRKE---VTQALSAAAAEGDRSENAEYIYRKKELRGIDR-RI 70
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L+ + ++ DRI F A V+L E +G++ Y+IVG E + + +S+
Sbjct: 71 HYLQKRLPSLNIVSQPPDDQDRIFFSAWVTL-ENEAGEEVTYRIVGADELNPKKHYISLD 129
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ARAL+ K D +++ E Y ++ +
Sbjct: 130 SPLARALLKKTFDDAVAIKNELKETRYTVVDI 161
>gi|298345920|ref|YP_003718607.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063]
gi|304390376|ref|ZP_07372329.1| transcription elongation factor GreA [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315654508|ref|ZP_07907414.1| transcription elongation factor GreA [Mobiluncus curtisii ATCC
51333]
gi|315657583|ref|ZP_07910465.1| transcription elongation factor GreA [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298235981|gb|ADI67113.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063]
gi|304326132|gb|EFL93377.1| transcription elongation factor GreA [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315490972|gb|EFU80591.1| transcription elongation factor GreA [Mobiluncus curtisii ATCC
51333]
gi|315492055|gb|EFU81664.1| transcription elongation factor GreA [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 161
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 77/146 (52%), Gaps = 11/146 (7%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T FD++Q EL R R I K I AR GDL EN Y AA++ Q+ NE R+ EL
Sbjct: 10 MTQASFDRLQAELDERTGPIRSEITKKIDAARREGDLKENGGYHAARDEQSQNETRILEL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA----DVQSGLVSI 122
+ I+ AEV + +T I G S+VE G KK ++G ++A D+Q + S
Sbjct: 70 QEILKYAEVGEAATDG--TIGPG---SVVEAKVGPKKMTFLLGSRDAAKGMDIQ--VFSP 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEK 148
+P+ AL G GD + AP G+K
Sbjct: 123 DAPLGVALAGHRTGDTVEYVAPTGKK 148
>gi|325989739|ref|YP_004249438.1| transcription elongation factor GreA [Mycoplasma suis KI3806]
gi|323574824|emb|CBZ40484.1| Transcription elongation factor GreA [Mycoplasma suis]
Length = 161
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 92/155 (59%), Gaps = 7/155 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T ++Q++L ERP++++ + +AR+ GDLSENA+Y +AK+ Q+ E ++ E+
Sbjct: 9 ITEAKLKELQKQLDNLVNVERPQVLEELKQARSLGDLSENADYDSAKQRQHEIEKKVQEI 68
Query: 67 ENIITRAEVIDI--STMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E I+ +ID S+ G+++ G+ V + + + Y+I+G +AD + +S
Sbjct: 69 EAILKNYSLIDKKGSSERGEKVVEIGSKVKIFHSLTNKEYVYEILGSLDADPANMKISNE 128
Query: 124 SPIARALIGKELGDIISVNAPGGEKTY--EILQVL 156
SPIA+ ++GK +G V G +K+Y +IL++L
Sbjct: 129 SPIAKTIMGKPVGGTYQVE--GLKKSYYIKILEIL 161
>gi|325973303|ref|YP_004250367.1| transcription elongation factor GreA [Mycoplasma suis str.
Illinois]
gi|323651905|gb|ADX97987.1| transcription elongation factor GreA [Mycoplasma suis str.
Illinois]
Length = 158
Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 92/155 (59%), Gaps = 7/155 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T ++Q++L ERP++++ + +AR+ GDLSENA+Y +AK+ Q+ E ++ E+
Sbjct: 6 ITEAKLKELQKQLDNLVNVERPQVLEELKQARSLGDLSENADYDSAKQRQHEIEKKVQEI 65
Query: 67 ENIITRAEVIDI--STMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E I+ +ID S+ G+++ G+ V + + + Y+I+G +AD + +S
Sbjct: 66 EAILKNYSLIDKKGSSERGEKVVEIGSKVKIFHSLTNKEYVYEILGSLDADPANMKISNE 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTY--EILQVL 156
SPIA+ ++GK +G V G +K+Y +IL++L
Sbjct: 126 SPIAKTIMGKPVGGTYQVE--GLKKSYYIKILEIL 158
>gi|331091714|ref|ZP_08340548.1| hypothetical protein HMPREF9477_01191 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330403471|gb|EGG83030.1| hypothetical protein HMPREF9477_01191 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 167
Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 79/142 (55%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+++E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTEEDIKKMEEEIEYRRLVVRKEALEAVKEARAHGDLSENFEYHAAKKDKNKNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I A+++ + D + V + ++ + + +++V + +S SPI
Sbjct: 65 QRMIRTAQIVSDDSKE-DEVGINKAVEVYFEDDDECETFKLVTTVRGNSIDNRISTESPI 123
Query: 127 ARALIGKELGD--IISVNAPGG 146
+A++G + GD + VN G
Sbjct: 124 GKAILGHKAGDRVFVKVNENAG 145
>gi|15676587|ref|NP_273731.1| transcription elongation factor GreB [Neisseria meningitidis MC58]
gi|34222642|sp|Q9K0C5|GREB_NEIMB RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|7225917|gb|AAF41107.1| transcription elongation factor GreB [Neisseria meningitidis MC58]
gi|316983663|gb|EFV62644.1| transcription elongation factor GreB [Neisseria meningitidis
H44/76]
gi|325139932|gb|EGC62462.1| transcription elongation factor GreB [Neisseria meningitidis CU385]
gi|325200625|gb|ADY96080.1| transcription elongation factor GreB [Neisseria meningitidis
H44/76]
Length = 163
Score = 73.9 bits (180), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L
Sbjct: 9 ITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D++ FGATV L+ ++ G ++ +IVG E D +S SP
Sbjct: 69 TKRLEAAVVVDPELREATDQVFFGATVGLL-RDDGREQTVKIVGIDEIDTAQNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V +I
Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|300856704|ref|YP_003781688.1| putative transcription elongation factor [Clostridium ljungdahlii
DSM 13528]
gi|300436819|gb|ADK16586.1| predicted transcription elongation factor [Clostridium ljungdahlii
DSM 13528]
Length = 154
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 83/148 (56%), Gaps = 3/148 (2%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T G K++ EL + + +R I A+ ARA GDLSENA+Y AAK+ Q++ E R+
Sbjct: 4 VILTESGKKKLEDELEYLKTVKRVEIKLALKAARAQGDLSENADYDAAKDDQSMTETRIQ 63
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELE + A +I+ S+ D T + + + + +V EADV++ +SI S
Sbjct: 64 ELEAQLKNAVIIE-SSSEADVFDINKTALVKFCDVDETEEVTLVSTVEADVKNMKISIES 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
P+ +AL ++G +V +P G +Y++
Sbjct: 123 PLGKALYKLKVGQKATVASPDG--SYDV 148
>gi|314966306|gb|EFT10405.1| transcription elongation factor GreA [Propionibacterium acnes
HL082PA2]
gi|315093472|gb|EFT65448.1| transcription elongation factor GreA [Propionibacterium acnes
HL060PA1]
gi|327327087|gb|EGE68868.1| transcription elongation factor GreA [Propionibacterium acnes
HL103PA1]
Length = 168
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 6/149 (4%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + +T + FDK+ QEL + + E R I I++AR+ GDLSEN YQAA+E Q E R
Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGEGRTVIANKIADARSEGDLSENGGYQAAREEQGQAEAR 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117
+ +LE ++ AEV + + S D + G+ V++ + + ++G ++ V
Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTICYFDDESDTDTFLLGSRQVMGLDDSVNV 124
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146
+ S SP+ A++G G+ AP G
Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYQAPNG 153
>gi|254555375|ref|YP_003061792.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1]
gi|308179372|ref|YP_003923500.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|254044302|gb|ACT61095.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1]
gi|308044863|gb|ADN97406.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 156
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 85/149 (57%), Gaps = 3/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G+ I+QE+ +Q+ RP I+ ++ A A GD SENAEY +AK E R+ L
Sbjct: 8 MTATGYHAIEQEIEDLKQQ-RPERIRILAAAAALGDRSENAEYSSAKRDLGRLESRLRYL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A+++ +++ G V++ + D+ YQ+VG QEA+++ +S +SPI
Sbjct: 67 NKQLQYAQIV--QPADNNQLDIGKFVTIEFLDDHDQITYQLVGKQEANLEQQKISFTSPI 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL + D+++VNAP G +++ V
Sbjct: 125 GQALANHTVDDVVTVNAPNGAYQVKVIAV 153
>gi|256372307|ref|YP_003110131.1| GreA/GreB family elongation factor [Acidimicrobium ferrooxidans DSM
10331]
gi|256008891|gb|ACU54458.1| GreA/GreB family elongation factor [Acidimicrobium ferrooxidans DSM
10331]
Length = 160
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 1/154 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ ++ ++ +D + QEL + R I KAI ARA GDLSEN +Y AAK+ Q E
Sbjct: 1 MSEVEISQATYDALVQELEELTTQGRIEIAKAIEAARALGDLSENGDYHAAKDAQGKMEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +++ I+ A V+ + + D + G V L + D ++Y + +E +VS
Sbjct: 61 RIRQIQQILQSARVVS-ADLPTDEVRPGVVVGLRYEGEDDVEHYLVGSIEERHPGLEVVS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+SP+ AL+G +G + AP G +++++
Sbjct: 120 PTSPLGEALLGARVGAWVEYEAPRGTLKVQVVEI 153
>gi|90020882|ref|YP_526709.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40]
gi|89950482|gb|ABD80497.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40]
Length = 157
Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 77/146 (52%), Gaps = 1/146 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G ++ EL + ERP + K +S A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITPQGLKDLKAELDELWRVERPEVTKKVSWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I +V++ ++ FGA V VE + G+ ++IVG E + +SI +P+
Sbjct: 66 RKCIENLKVVEYHPDQEGKVFFGAWVE-VENDEGEVLTFRIVGYDEIFNRKNYISIDAPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
ARAL+ KE+ D V G+ T+ I
Sbjct: 125 ARALLKKEVDDEAVVRTEAGKTTWYI 150
>gi|238924211|ref|YP_002937727.1| transcription elongation factor GreA [Eubacterium rectale ATCC
33656]
gi|238875886|gb|ACR75593.1| transcription elongation factor GreA [Eubacterium rectale ATCC
33656]
gi|291524937|emb|CBK90524.1| Transcription elongation factor [Eubacterium rectale DSM 17629]
gi|291529078|emb|CBK94664.1| Transcription elongation factor [Eubacterium rectale M104/1]
Length = 167
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 1/135 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ K++ E+ +R+ R + + + ARA GDLSEN EY+AAK+ +N NE R+ L
Sbjct: 5 LTANDIKKMEDEIEYRKLVVRKKALDDVKVARAQGDLSENFEYKAAKQFKNQNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A VI + D + TV + ++ + + Y+IV + L+S SP+
Sbjct: 65 EKMIKTAVVISDES-KDDEVGMFNTVDVYFEDDDETETYKIVTTVRGNSLKNLISKESPL 123
Query: 127 ARALIGKELGDIISV 141
A+ G ++GD V
Sbjct: 124 GAAIFGHKVGDRCEV 138
>gi|187250809|ref|YP_001875291.1| transcription elongation factor [Elusimicrobium minutum Pei191]
gi|186970969|gb|ACC97954.1| Transcription elongation factor [Elusimicrobium minutum Pei191]
Length = 156
Score = 73.6 bits (179), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K ++ K ++K++++L + E + ++ I EA GDL ENAEY AAK Q
Sbjct: 1 MEKYYLSRKNYEKLREDLTALK-EIKAKLSLEIGEAAQQGDLRENAEYAAAKSRQEETLV 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ +LE + A++ D + GATV++ + ++ Y +VG E++ + GL+S
Sbjct: 60 KIQDLEQKLRNAQITDDIQVDKSEARIGATVTVHDISADIDFTYTLVGSMESNPEKGLLS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+A +++GK+ G+ P G+K Y+++++ +
Sbjct: 120 VQSPLAVSILGKKEGEEFEAVLPKGKKMYKLVKLEY 155
>gi|261400370|ref|ZP_05986495.1| transcription elongation factor GreB [Neisseria lactamica ATCC
23970]
gi|269209803|gb|EEZ76258.1| transcription elongation factor GreB [Neisseria lactamica ATCC
23970]
Length = 163
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L
Sbjct: 9 ITPTGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V +I
Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|121634487|ref|YP_974732.1| transcription elongation factor GreB [Neisseria meningitidis FAM18]
gi|304388016|ref|ZP_07370187.1| transcription elongation factor GreB [Neisseria meningitidis ATCC
13091]
gi|313668831|ref|YP_004049115.1| transcription elongation factor [Neisseria lactamica ST-640]
gi|120866193|emb|CAM09933.1| putative transcription elongation factor [Neisseria meningitidis
FAM18]
gi|254670524|emb|CBA06313.1| Transcription elongation factor [Neisseria meningitidis alpha153]
gi|254673612|emb|CBA09140.1| Transcription elongation factor [Neisseria meningitidis alpha275]
gi|304337964|gb|EFM04103.1| transcription elongation factor GreB [Neisseria meningitidis ATCC
13091]
gi|308388876|gb|ADO31196.1| putative transcription elongation factor [Neisseria meningitidis
alpha710]
gi|313006293|emb|CBN87756.1| putative transcription elongation factor [Neisseria lactamica
020-06]
gi|325127803|gb|EGC50711.1| transcription elongation factor GreB [Neisseria meningitidis N1568]
gi|325129850|gb|EGC52657.1| transcription elongation factor GreB [Neisseria meningitidis
OX99.30304]
gi|325131857|gb|EGC54557.1| transcription elongation factor GreB [Neisseria meningitidis M6190]
gi|325133796|gb|EGC56452.1| transcription elongation factor GreB [Neisseria meningitidis
M13399]
gi|325136088|gb|EGC58698.1| transcription elongation factor GreB [Neisseria meningitidis M0579]
gi|325137907|gb|EGC60482.1| transcription elongation factor GreB [Neisseria meningitidis
ES14902]
gi|325141938|gb|EGC64378.1| transcription elongation factor GreB [Neisseria meningitidis
961-5945]
gi|325143923|gb|EGC66233.1| transcription elongation factor GreB [Neisseria meningitidis
M01-240013]
gi|325203776|gb|ADY99229.1| transcription elongation factor GreB [Neisseria meningitidis
M01-240355]
gi|325206467|gb|ADZ01920.1| transcription elongation factor GreB [Neisseria meningitidis
M04-240196]
gi|325207735|gb|ADZ03187.1| transcription elongation factor GreB [Neisseria meningitidis
NZ-05/33]
Length = 163
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L
Sbjct: 9 ITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLESAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V +I
Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|161869630|ref|YP_001598797.1| transcription elongation factor GreB [Neisseria meningitidis
053442]
gi|296314716|ref|ZP_06864657.1| transcription elongation factor GreB [Neisseria polysaccharea ATCC
43768]
gi|161595183|gb|ABX72843.1| transcription elongation factor [Neisseria meningitidis 053442]
gi|296838551|gb|EFH22489.1| transcription elongation factor GreB [Neisseria polysaccharea ATCC
43768]
Length = 163
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L
Sbjct: 9 ITPAGWQALKDELYRLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLESAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V +I
Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|325202515|gb|ADY97969.1| transcription elongation factor GreB [Neisseria meningitidis
M01-240149]
Length = 163
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L
Sbjct: 9 ITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V +I
Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|320532416|ref|ZP_08033252.1| putative transcription elongation factor GreA [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320135363|gb|EFW27475.1| putative transcription elongation factor GreA [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 161
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++ EL R+ ER I + + AR GDL ENA Y AA+E LNE R+ +L
Sbjct: 10 LTQEAYDRLSTELEHRKTAERKEIAQRVEAARQEGDLRENAGYHAAREEAGLNEARIIQL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSG--LVSIS 123
E + A++ + + D + A + K +G ++ + + G + DV G + S
Sbjct: 70 EETLENAQIGE----AADDGSVSAGTIVTAKVAGKEQVFALGGQEITEDVPDGVKVFSPD 125
Query: 124 SPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
+P+ +AL+G GD +S AP G K EI++V
Sbjct: 126 APLGQALMGHRAGDTVSYEAPTGRKIKAEIVKV 158
>gi|59800713|ref|YP_207425.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA
1090]
gi|194097981|ref|YP_002001029.1| transcription elongation factor GreB [Neisseria gonorrhoeae
NCCP11945]
gi|239998449|ref|ZP_04718373.1| transcription elongation factor GreB [Neisseria gonorrhoeae 35/02]
gi|240013574|ref|ZP_04720487.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI18]
gi|240016013|ref|ZP_04722553.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA6140]
gi|240080154|ref|ZP_04724697.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA19]
gi|240112368|ref|ZP_04726858.1| transcription elongation factor GreB [Neisseria gonorrhoeae MS11]
gi|240115108|ref|ZP_04729170.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID18]
gi|240117391|ref|ZP_04731453.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID1]
gi|240120643|ref|ZP_04733605.1| transcription elongation factor GreB [Neisseria gonorrhoeae
PID24-1]
gi|240122948|ref|ZP_04735904.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID332]
gi|240125199|ref|ZP_04738085.1| transcription elongation factor GreB [Neisseria gonorrhoeae
SK-92-679]
gi|240127654|ref|ZP_04740315.1| transcription elongation factor GreB [Neisseria gonorrhoeae
SK-93-1035]
gi|254493169|ref|ZP_05106340.1| transcription elongation factor greB [Neisseria gonorrhoeae 1291]
gi|260441075|ref|ZP_05794891.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI2]
gi|268594310|ref|ZP_06128477.1| transcription elongation factor GreB [Neisseria gonorrhoeae 35/02]
gi|268596305|ref|ZP_06130472.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA19]
gi|268598428|ref|ZP_06132595.1| transcription elongation factor greB [Neisseria gonorrhoeae MS11]
gi|268600782|ref|ZP_06134949.1| transcription elongation factor greB [Neisseria gonorrhoeae PID18]
gi|268603087|ref|ZP_06137254.1| transcription elongation factor greB [Neisseria gonorrhoeae PID1]
gi|268681568|ref|ZP_06148430.1| transcription elongation factor greB [Neisseria gonorrhoeae PID332]
gi|268683796|ref|ZP_06150658.1| transcription elongation factor greB [Neisseria gonorrhoeae
SK-92-679]
gi|268686038|ref|ZP_06152900.1| transcription elongation factor greB [Neisseria gonorrhoeae
SK-93-1035]
gi|291044409|ref|ZP_06570118.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI2]
gi|293399588|ref|ZP_06643741.1| transcription elongation factor GreB [Neisseria gonorrhoeae F62]
gi|59717608|gb|AAW89013.1| putative transcription elongation [Neisseria gonorrhoeae FA 1090]
gi|193933271|gb|ACF29095.1| transcription elongation factor GreB [Neisseria gonorrhoeae
NCCP11945]
gi|226512209|gb|EEH61554.1| transcription elongation factor greB [Neisseria gonorrhoeae 1291]
gi|268547699|gb|EEZ43117.1| transcription elongation factor GreB [Neisseria gonorrhoeae 35/02]
gi|268550093|gb|EEZ45112.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA19]
gi|268582559|gb|EEZ47235.1| transcription elongation factor greB [Neisseria gonorrhoeae MS11]
gi|268584913|gb|EEZ49589.1| transcription elongation factor greB [Neisseria gonorrhoeae PID18]
gi|268587218|gb|EEZ51894.1| transcription elongation factor greB [Neisseria gonorrhoeae PID1]
gi|268621852|gb|EEZ54252.1| transcription elongation factor greB [Neisseria gonorrhoeae PID332]
gi|268624080|gb|EEZ56480.1| transcription elongation factor greB [Neisseria gonorrhoeae
SK-92-679]
gi|268626322|gb|EEZ58722.1| transcription elongation factor greB [Neisseria gonorrhoeae
SK-93-1035]
gi|291011303|gb|EFE03299.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI2]
gi|291610157|gb|EFF39279.1| transcription elongation factor GreB [Neisseria gonorrhoeae F62]
gi|317163732|gb|ADV07273.1| transcription elongation factor GreB [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 163
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L
Sbjct: 9 ITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGVDEIDTAQNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V +I
Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|218767812|ref|YP_002342324.1| transcription elongation factor GreB [Neisseria meningitidis Z2491]
gi|34222639|sp|Q9JVD0|GREB_NEIMA RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|121051820|emb|CAM08126.1| putative transcription elongation factor [Neisseria meningitidis
Z2491]
gi|319410062|emb|CBY90396.1| transcription elongation factor GreB (transcript cleavage factor
GreB) [Neisseria meningitidis WUE 2594]
Length = 163
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L
Sbjct: 9 ITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V +I
Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|237748857|ref|ZP_04579337.1| transcription elongation factor and transcript cleavage
[Oxalobacter formigenes OXCC13]
gi|229380219|gb|EEO30310.1| transcription elongation factor and transcript cleavage
[Oxalobacter formigenes OXCC13]
Length = 184
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL +ERP++++ +S A + GD SEN +Y K + R+ L
Sbjct: 30 ITPAGLKSLKDELLSLIDKERPQVVQIVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 89
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I AE D S G D+I FGATV+ E+ G++ IVG E D G +S SP
Sbjct: 90 IKRIEAAEEFDPSIHYGNDQIFFGATVTY-EREDGEENTITIVGIDEFDPLEGRISWISP 148
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+A+ LI GD ++++ P G + IL+V
Sbjct: 149 MAKTLIKAREGDTVTLHTPAGIEELVILEV 178
>gi|325067374|ref|ZP_08126047.1| transcription elongation factor GreA [Actinomyces oris K20]
gi|326772303|ref|ZP_08231588.1| transcription elongation factor GreA [Actinomyces viscosus C505]
gi|326638436|gb|EGE39337.1| transcription elongation factor GreA [Actinomyces viscosus C505]
Length = 161
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 82/153 (53%), Gaps = 8/153 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++ EL R+ ER I + + AR GDL ENA Y AA+E LNE R+ +L
Sbjct: 10 LTQEAYDRLAAELEHRKTTERKEIAQRVEAARQEGDLRENAGYHAAREEAGLNEARIIQL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSG--LVSIS 123
E + A++ + + D + A + K +G ++ + + G + DV G + S
Sbjct: 70 EETLENAQIGE----AADDGSVSAGTIVTAKVAGKEQVFALGGQEITEDVPDGVKVFSPD 125
Query: 124 SPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
+P+ +AL+G GD +S AP G K EI++V
Sbjct: 126 APLGQALMGHRAGDTVSYEAPNGRKIQAEIVKV 158
>gi|91775490|ref|YP_545246.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
gi|91709477|gb|ABE49405.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
Length = 165
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 23/155 (14%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIK----AISEARAYGDLSENAEYQAAKELQNLNEGR 62
VT GF +QQ+ +QE +P ++ A+ + A D ++L+ L
Sbjct: 30 VTPHGFKLLQQQASALEQERQPLTMRKDDPAVQQRLAMID----------RDLRYLQ--- 76
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
A LE+ I V+D +T D + FGATV VE +G+ + IVG+ EAD+ + VS
Sbjct: 77 -ARLESAI----VVDPATQPTDTVLFGATVE-VEDENGNSHTFMIVGEDEADIATNRVSW 130
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A+ALIG+++GD ++ + P G EI+ + +
Sbjct: 131 VSPLAKALIGQKIGDSVTWHRPAGNLELEIIAIHY 165
>gi|213163103|ref|ZP_03348813.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 125
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 34 ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVS 93
++ A + GD SENA+YQ K+ + R+ L + +++D S ++ FGA V
Sbjct: 1 MTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVE 60
Query: 94 LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
+E + GD ++IVG E + +SI SP+ARAL+ KE+GD+ VN P GE + +
Sbjct: 61 -IENDDGDTLKFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPVGEANWYV 118
>gi|191637035|ref|YP_001986201.1| transcription elongation factor GreA [Lactobacillus casei BL23]
gi|239631048|ref|ZP_04674079.1| transcription elongation factor greA 1 [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|301065369|ref|YP_003787392.1| transcription elongation factor [Lactobacillus casei str. Zhang]
gi|190711337|emb|CAQ65343.1| Transcription elongation factor [Lactobacillus casei BL23]
gi|239527331|gb|EEQ66332.1| transcription elongation factor greA 1 [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|300437776|gb|ADK17542.1| Transcription elongation factor [Lactobacillus casei str. Zhang]
gi|327381062|gb|AEA52538.1| Transcription elongation factor GreA [Lactobacillus casei LC2W]
gi|327384237|gb|AEA55711.1| Transcription elongation factor GreA [Lactobacillus casei BD-II]
Length = 155
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 5/156 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
MV +T G ++QE+ + RP IK +++A A GD SENAEY AAK EL+ L
Sbjct: 1 MVTYHEITPTGLANLKQEVE-DLKTIRPAKIKNLADAAALGDRSENAEYSAAKRELRQL- 58
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ L+ +I A+V + + D G ++L + D+ Y++VG EA +
Sbjct: 59 EGRLRYLDKLIRYAKVTHPA--ASDIADIGNRITLKFDDDEDQATYELVGPAEAGMGQDK 116
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
++I+SP+ A+ GD ++V AP G ++ +
Sbjct: 117 LAINSPLGAAIRQHHAGDTVTVTAPSGSYQVTLMNI 152
>gi|296115084|ref|ZP_06833726.1| putative transcription elongation factor greB [Gluconacetobacter
hansenii ATCC 23769]
gi|295978421|gb|EFG85157.1| putative transcription elongation factor greB [Gluconacetobacter
hansenii ATCC 23769]
Length = 177
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 84/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ KG + ++ EL ++ERPRI++ +S A GD SEN +Y K+ + R+ L
Sbjct: 19 ISPKGMEVLRHELNTLLRDERPRIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRFL 78
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I +A ++D + ++ FGATV+ + + + I+G EAD G +S+ SP
Sbjct: 79 TKRIEKAIIVDPAQQPRRGQVFFGATVTYATERD-ETRVVTIMGVDEADTVRGEISLISP 137
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ +GD + + P G++ E++ + +
Sbjct: 138 VARALMRARVGDEVRLMTPRGDEMLEVMAISY 169
>gi|46198988|ref|YP_004655.1| anti-cleavage anti-greA transcription factor gfh1 [Thermus
thermophilus HB27]
gi|109157536|pdb|2F23|A Chain A, Crystal Structure Of Grea Factor Homolog 1 (Gfh1) Protein
Of Thermus Thermophilus
gi|109157537|pdb|2F23|B Chain B, Crystal Structure Of Grea Factor Homolog 1 (Gfh1) Protein
Of Thermus Thermophilus
gi|18034647|gb|AAL57612.1|AF456235_1 anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
thermophilus]
gi|46196612|gb|AAS81028.1| anti-cleavage anti-greA transcription factor gfh1 [Thermus
thermophilus HB27]
Length = 156
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 92/157 (58%), Gaps = 5/157 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T G++++ Q+L R++E K + E D +++ +AAK+ + E
Sbjct: 1 MAREVKLTKAGYERLMQQLE-RERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE+I++RA +++ SG+ I G+ V L + SG++ + Q+V EA+V +
Sbjct: 60 ARIDSLEDILSRAVILE--EGSGEVIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPM 117
Query: 121 SIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
IS SP+ +AL+G +GD++S++ P G++ + ++ +
Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGKREFRVVAI 154
>gi|256370764|ref|YP_003108589.1| putative transcription elongation factor GreA [Candidatus Sulcia
muelleri SMDSEM]
gi|256009556|gb|ACU52916.1| putative transcription elongation factor GreA [Candidatus Sulcia
muelleri SMDSEM]
Length = 157
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 65/107 (60%)
Query: 41 GDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
GDLSEN+EY+ AKE Q L E ++ L+ I +ID+S ++ +++ V + +G
Sbjct: 39 GDLSENSEYKIAKENQRLLEIKIFNLKKKINNTRIIDLSKINTTKVSIFTKVKVKNIETG 98
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ Y +V + E++++ +SI +PIA+ LIGK++G+I + P +
Sbjct: 99 ECIYYTLVPETESNIKKLKISIYTPIAKGLIGKKIGEIAHIKLPNNK 145
>gi|50842047|ref|YP_055274.1| transcription elongation factor GreA [Propionibacterium acnes
KPA171202]
gi|289425793|ref|ZP_06427547.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Propionibacterium acnes SK187]
gi|289426784|ref|ZP_06428512.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Propionibacterium acnes J165]
gi|295130130|ref|YP_003580793.1| transcription elongation factor GreA [Propionibacterium acnes
SK137]
gi|50839649|gb|AAT82316.1| transcription elongation factor GreA [Propionibacterium acnes
KPA171202]
gi|289153736|gb|EFD02443.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Propionibacterium acnes SK187]
gi|289160110|gb|EFD08286.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Propionibacterium acnes J165]
gi|291375127|gb|ADD98981.1| transcription elongation factor GreA [Propionibacterium acnes
SK137]
gi|313764010|gb|EFS35374.1| transcription elongation factor GreA [Propionibacterium acnes
HL013PA1]
gi|313771459|gb|EFS37425.1| transcription elongation factor GreA [Propionibacterium acnes
HL074PA1]
gi|313791667|gb|EFS39785.1| transcription elongation factor GreA [Propionibacterium acnes
HL110PA1]
gi|313802247|gb|EFS43473.1| transcription elongation factor GreA [Propionibacterium acnes
HL110PA2]
gi|313808119|gb|EFS46593.1| transcription elongation factor GreA [Propionibacterium acnes
HL087PA2]
gi|313811414|gb|EFS49128.1| transcription elongation factor GreA [Propionibacterium acnes
HL083PA1]
gi|313812597|gb|EFS50311.1| transcription elongation factor GreA [Propionibacterium acnes
HL025PA1]
gi|313814863|gb|EFS52577.1| transcription elongation factor GreA [Propionibacterium acnes
HL059PA1]
gi|313818886|gb|EFS56600.1| transcription elongation factor GreA [Propionibacterium acnes
HL046PA2]
gi|313820713|gb|EFS58427.1| transcription elongation factor GreA [Propionibacterium acnes
HL036PA1]
gi|313822520|gb|EFS60234.1| transcription elongation factor GreA [Propionibacterium acnes
HL036PA2]
gi|313825684|gb|EFS63398.1| transcription elongation factor GreA [Propionibacterium acnes
HL063PA1]
gi|313828026|gb|EFS65740.1| transcription elongation factor GreA [Propionibacterium acnes
HL063PA2]
gi|313830831|gb|EFS68545.1| transcription elongation factor GreA [Propionibacterium acnes
HL007PA1]
gi|313833259|gb|EFS70973.1| transcription elongation factor GreA [Propionibacterium acnes
HL056PA1]
gi|313839015|gb|EFS76729.1| transcription elongation factor GreA [Propionibacterium acnes
HL086PA1]
gi|314915042|gb|EFS78873.1| transcription elongation factor GreA [Propionibacterium acnes
HL005PA4]
gi|314918627|gb|EFS82458.1| transcription elongation factor GreA [Propionibacterium acnes
HL050PA1]
gi|314920435|gb|EFS84266.1| transcription elongation factor GreA [Propionibacterium acnes
HL050PA3]
gi|314925628|gb|EFS89459.1| transcription elongation factor GreA [Propionibacterium acnes
HL036PA3]
gi|314932109|gb|EFS95940.1| transcription elongation factor GreA [Propionibacterium acnes
HL067PA1]
gi|314954625|gb|EFS99031.1| transcription elongation factor GreA [Propionibacterium acnes
HL027PA1]
gi|314958576|gb|EFT02678.1| transcription elongation factor GreA [Propionibacterium acnes
HL002PA1]
gi|314959820|gb|EFT03922.1| transcription elongation factor GreA [Propionibacterium acnes
HL002PA2]
gi|314962393|gb|EFT06494.1| transcription elongation factor GreA [Propionibacterium acnes
HL082PA1]
gi|314968336|gb|EFT12435.1| transcription elongation factor GreA [Propionibacterium acnes
HL037PA1]
gi|314973719|gb|EFT17815.1| transcription elongation factor GreA [Propionibacterium acnes
HL053PA1]
gi|314976366|gb|EFT20461.1| transcription elongation factor GreA [Propionibacterium acnes
HL045PA1]
gi|314979203|gb|EFT23297.1| transcription elongation factor GreA [Propionibacterium acnes
HL072PA2]
gi|314983351|gb|EFT27443.1| transcription elongation factor GreA [Propionibacterium acnes
HL005PA1]
gi|314986758|gb|EFT30850.1| transcription elongation factor GreA [Propionibacterium acnes
HL005PA2]
gi|314989499|gb|EFT33590.1| transcription elongation factor GreA [Propionibacterium acnes
HL005PA3]
gi|315077480|gb|EFT49540.1| transcription elongation factor GreA [Propionibacterium acnes
HL053PA2]
gi|315080223|gb|EFT52199.1| transcription elongation factor GreA [Propionibacterium acnes
HL078PA1]
gi|315084105|gb|EFT56081.1| transcription elongation factor GreA [Propionibacterium acnes
HL027PA2]
gi|315085307|gb|EFT57283.1| transcription elongation factor GreA [Propionibacterium acnes
HL002PA3]
gi|315089078|gb|EFT61054.1| transcription elongation factor GreA [Propionibacterium acnes
HL072PA1]
gi|315096494|gb|EFT68470.1| transcription elongation factor GreA [Propionibacterium acnes
HL038PA1]
gi|315098901|gb|EFT70877.1| transcription elongation factor GreA [Propionibacterium acnes
HL059PA2]
gi|315100859|gb|EFT72835.1| transcription elongation factor GreA [Propionibacterium acnes
HL046PA1]
gi|315107203|gb|EFT79179.1| transcription elongation factor GreA [Propionibacterium acnes
HL030PA1]
gi|315108077|gb|EFT80053.1| transcription elongation factor GreA [Propionibacterium acnes
HL030PA2]
gi|327326744|gb|EGE68527.1| transcription elongation factor GreA [Propionibacterium acnes
HL096PA2]
gi|327330559|gb|EGE72306.1| transcription elongation factor GreA [Propionibacterium acnes
HL096PA3]
gi|327331070|gb|EGE72810.1| transcription elongation factor GreA [Propionibacterium acnes
HL097PA1]
gi|327443055|gb|EGE89709.1| transcription elongation factor GreA [Propionibacterium acnes
HL043PA1]
gi|327445178|gb|EGE91832.1| transcription elongation factor GreA [Propionibacterium acnes
HL043PA2]
gi|327446896|gb|EGE93550.1| transcription elongation factor GreA [Propionibacterium acnes
HL013PA2]
gi|327450159|gb|EGE96813.1| transcription elongation factor GreA [Propionibacterium acnes
HL087PA3]
gi|327455114|gb|EGF01769.1| transcription elongation factor GreA [Propionibacterium acnes
HL092PA1]
gi|327455284|gb|EGF01939.1| transcription elongation factor GreA [Propionibacterium acnes
HL083PA2]
gi|328752572|gb|EGF66188.1| transcription elongation factor GreA [Propionibacterium acnes
HL020PA1]
gi|328752825|gb|EGF66441.1| transcription elongation factor GreA [Propionibacterium acnes
HL087PA1]
gi|328759252|gb|EGF72868.1| transcription elongation factor GreA [Propionibacterium acnes
HL025PA2]
gi|328760261|gb|EGF73834.1| transcription elongation factor GreA [Propionibacterium acnes
HL099PA1]
gi|332674970|gb|AEE71786.1| transcription elongation factor GreA [Propionibacterium acnes 266]
Length = 168
Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + +T + FDK+ QEL + + E R I I++AR+ GDLSEN Y AA+E Q E R
Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGEGRTAIANKIADARSEGDLSENGGYHAAREEQGQAEAR 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117
+ +LE ++ AEV + + S D + G+ V++ + + ++G ++ V
Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTVCYFDDESDTDTFLLGSRQVMGLDDSVNV 124
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146
+ S SP+ A++G G+ AP G
Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYQAPNG 153
>gi|309378808|emb|CBX22634.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 163
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 79/153 (51%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L
Sbjct: 9 ITPTGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V ++
Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYV 160
>gi|116493793|ref|YP_805527.1| transcription elongation factor GreA [Lactobacillus casei ATCC 334]
gi|116103943|gb|ABJ69085.1| transcription elongation factor GreA [Lactobacillus casei ATCC 334]
Length = 155
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 5/156 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
MV +T G ++QE+ + RP IK +++A A GD SENAEY AAK EL+ L
Sbjct: 1 MVTYHEITPTGLANLKQEVE-DLKTIRPAKIKNLADAAALGDRSENAEYSAAKRELRQL- 58
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ L+ +I A+V + + D G ++L + D Y++VG EA +
Sbjct: 59 EGRLRYLDKLIRYAKVTHPA--ASDIADIGNRITLKFDDDEDHATYELVGPAEAGMGQDK 116
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
++I+SP+ A+ GD ++V AP G ++ +
Sbjct: 117 LAINSPLGAAIRQHHAGDTVTVTAPSGSYQVTLMNI 152
>gi|298369204|ref|ZP_06980522.1| transcription elongation factor GreB [Neisseria sp. oral taxon 014
str. F0314]
gi|298283207|gb|EFI24694.1| transcription elongation factor GreB [Neisseria sp. oral taxon 014
str. F0314]
Length = 163
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L
Sbjct: 9 ITPVGWQALKDELYRLVHKERPEIVQVVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D +++ FGATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLEAAVVVDPEQREPTEQVFFGATVCLL-RGDGSEQTVRIVGADEIDTAQNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V +I
Sbjct: 128 LARCLIKAREGDEVVLNGPEGREEIEILSVEYI 160
>gi|311743142|ref|ZP_07716950.1| transcription elongation factor GreA [Aeromicrobium marinum DSM
15272]
gi|311313822|gb|EFQ83731.1| transcription elongation factor GreA [Aeromicrobium marinum DSM
15272]
Length = 175
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 8/160 (5%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
D I VT + +D+++ EL + E R I I+ AR GDL EN Y AA+E Q E
Sbjct: 15 TDTIWVTQEAYDRLRSELDHLRGEVRSDITSKIAAARDEGDLKENGGYHAAREEQGKTEA 74
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-----ADVQ 116
R+ +LE+++ RAEV D G + G V++ D +++ ++G +E + V
Sbjct: 75 RIRQLEDMLRRAEVGDKPADDG-LVEAGMKVTIRFAGDDDTESF-LLGSRELLSLDSSVD 132
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
+ S +SP+ A++GK+ GD + P G T E+++
Sbjct: 133 LDVYSPTSPLGAAILGKKAGDTATYETPNGRSITVEVVEA 172
>gi|261380528|ref|ZP_05985101.1| transcription elongation factor GreB [Neisseria subflava NJ9703]
gi|284796784|gb|EFC52131.1| transcription elongation factor GreB [Neisseria subflava NJ9703]
Length = 163
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L
Sbjct: 9 ITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D++ F ATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLEAAVVVDPEAREATDQVFFSATVGLL-RGDGREQTVKIVGVDEIDTAKNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR+LI GD + +N P G + EIL V +I
Sbjct: 128 LARSLIKAREGDEVVLNTPEGREVIEILSVEYI 160
>gi|325197909|gb|ADY93365.1| transcription elongation factor GreB [Neisseria meningitidis G2136]
Length = 163
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A GD SEN Y K + R+ L
Sbjct: 9 ITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGNYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLESAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V +I
Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|282854471|ref|ZP_06263808.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Propionibacterium acnes J139]
gi|282583924|gb|EFB89304.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Propionibacterium acnes J139]
gi|314922876|gb|EFS86707.1| transcription elongation factor GreA [Propionibacterium acnes
HL001PA1]
gi|314980833|gb|EFT24927.1| transcription elongation factor GreA [Propionibacterium acnes
HL110PA3]
gi|315090280|gb|EFT62256.1| transcription elongation factor GreA [Propionibacterium acnes
HL110PA4]
gi|315103027|gb|EFT75003.1| transcription elongation factor GreA [Propionibacterium acnes
HL050PA2]
Length = 168
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + +T + FDK+ QEL + + E R I I++AR+ GDLSEN Y AA+E Q E R
Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGEGRTVIANKIADARSEGDLSENGGYHAAREEQGQAEAR 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117
+ +LE ++ AEV + + S D + G+ V++ + + ++G ++ V
Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTICYFDDESDTDTFLLGSRQVMGLDDSVNV 124
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146
+ S SP+ A++G G+ AP G
Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYQAPNG 153
>gi|271502327|ref|YP_003335353.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
gi|270345882|gb|ACZ78647.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
Length = 160
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D S ++ FGA V + + K+ ++IVG E + +SI +P+
Sbjct: 66 RKRLQVVRVVDYSPQQDGKVFFGAWVEVENEEGEVKR-FRIVGPDEIYGRKDYISIDAPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+ K + + V P G + + + ++
Sbjct: 125 ARALLKKAVDEEAVVTTPTGPRVWYVNKI 153
>gi|55981011|ref|YP_144308.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
thermophilus HB8]
gi|83754983|pdb|2EUL|A Chain A, Structure Of The Transcription Factor Gfh1.
gi|83754984|pdb|2EUL|B Chain B, Structure Of The Transcription Factor Gfh1.
gi|83754985|pdb|2EUL|C Chain C, Structure Of The Transcription Factor Gfh1.
gi|83754986|pdb|2EUL|D Chain D, Structure Of The Transcription Factor Gfh1.
gi|313754180|pdb|3AOH|X Chain X, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
gi|313754181|pdb|3AOH|Y Chain Y, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
gi|313754182|pdb|3AOH|Z Chain Z, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
gi|313754204|pdb|3AOI|X Chain X, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
gi|313754205|pdb|3AOI|Y Chain Y, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
gi|313754206|pdb|3AOI|Z Chain Z, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
gi|55772424|dbj|BAD70865.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
thermophilus HB8]
Length = 156
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 91/157 (57%), Gaps = 5/157 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T G++++ Q+L R++E K + E D +++ +AAK+ + E
Sbjct: 1 MAREVKLTKAGYERLMQQLE-RERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE+I++RA +++ SG+ I G+ V L + SG++ + Q+V EA+V +
Sbjct: 60 ARIDSLEDILSRAVILEEG--SGEVIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPM 117
Query: 121 SIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
IS SP+ +AL+G +GD++S++ P G + + ++ +
Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGRREFRVVAI 154
>gi|288576392|ref|ZP_06394360.1| transcription elongation factor GreB [Neisseria mucosa ATCC 25996]
gi|288565631|gb|EFC87191.1| transcription elongation factor GreB [Neisseria mucosa ATCC 25996]
Length = 256
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L
Sbjct: 102 ITPVGWQALKDELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 161
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP
Sbjct: 162 TKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGVDEIDTAQNKISWISP 220
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V +I
Sbjct: 221 LARCLIKAREGDEVILNTPEGREEIEILSVEYI 253
>gi|326331165|ref|ZP_08197461.1| transcription elongation factor GreA [Nocardioidaceae bacterium
Broad-1]
gi|325951060|gb|EGD43104.1| transcription elongation factor GreA [Nocardioidaceae bacterium
Broad-1]
Length = 169
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/152 (34%), Positives = 78/152 (51%), Gaps = 7/152 (4%)
Query: 9 SKG-FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
SKG FDK+ EL + + R I+ IS AR GDL EN Y AA+E Q EG++ +LE
Sbjct: 15 SKGAFDKLTAELEYLKGPRRQEILAEISSARDEGDLKENGGYHAAREEQGKLEGQIQQLE 74
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSIS--- 123
++ +A+ D ++ G V+ E + D+ +++ E +G V IS
Sbjct: 75 ALLRKADT--TVPEDDDVVSVGKLVTFKFEGDDDDEAETRLIASIEMKDYAGGVEISSAA 132
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPI ALIG +GD ++ P G EIL+
Sbjct: 133 SPIGAALIGARVGDTVTYEGPRGPLKVEILKT 164
>gi|149197307|ref|ZP_01874359.1| transcript cleavage factor/unknown domain fusion protein
[Lentisphaera araneosa HTCC2155]
gi|149139853|gb|EDM28254.1| transcript cleavage factor/unknown domain fusion protein
[Lentisphaera araneosa HTCC2155]
Length = 693
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 88/157 (56%), Gaps = 8/157 (5%)
Query: 2 VDKIP-VTS-KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
V K+P VTS + + +Q+E E P KAI+ AR +GDL EN E++AAK+ Q
Sbjct: 529 VGKLPQVTSQRSYKALQEEHERLVNTEIPDNSKAIAAAREHGDLRENFEFRAAKDRQKYL 588
Query: 60 EGRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
+ R+ EL+ ++ + D S +R+ A V++ K+ + Y IVG + D
Sbjct: 589 QLRVGELDAMLNKIGPTDFSEFKVKNRVIPAAKVTI--KSPEAETTYSIVGMLDGDPDKN 646
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S +P+A++++G ++GD S+ PGG++ EIL V
Sbjct: 647 WLSFETPLAKSMLGHQVGD--SIELPGGDEA-EILAV 680
>gi|53802404|ref|YP_112932.1| transcription elongation factor [Methylococcus capsulatus str.
Bath]
gi|53756165|gb|AAU90456.1| putative transcription elongation factor [Methylococcus capsulatus
str. Bath]
Length = 166
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135
+D + SGDR+ FGATV VE +G+ + Y IVG+ EAD G +S SP+ARAL+ E
Sbjct: 84 VDPAARSGDRVHFGATVE-VEDEAGNVQRYSIVGEDEADAAHGKISWVSPLARALLNAEA 142
Query: 136 GDIISVNAPGGEKTYEILQV 155
GD ++ P G+K IL +
Sbjct: 143 GDTVTWKRPAGDKELHILAI 162
>gi|225164446|ref|ZP_03726704.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2]
gi|224800944|gb|EEG19282.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2]
Length = 617
Score = 72.0 bits (175), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 79/149 (53%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
V+ + +++ ++E ++ P KAI+ AR +GDL EN+EY+ AK+ Q + + A +
Sbjct: 462 VSRESYERKREEYETIVSKKIPENSKAIATAREHGDLKENSEYKMAKQDQQVLMAQKALI 521
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++RA + D D I G V L ++G Y ++G ++ + +++ +P+
Sbjct: 522 EKELSRARITDFKDAPTDSIGVGNIVGLKIGSTGKTATYTLLGAWDSIPEKNIIAYKTPL 581
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ L+ K +GD + V E+TY + +
Sbjct: 582 GQGLLTKRVGDTVQVKIGSAEETYTVTSI 610
>gi|119715224|ref|YP_922189.1| transcription elongation factor GreA [Nocardioides sp. JS614]
gi|119535885|gb|ABL80502.1| transcription elongation factor GreA [Nocardioides sp. JS614]
Length = 167
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 82/165 (49%), Gaps = 29/165 (17%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +DK++ EL + R II IS AR GDL EN Y AA+E Q EGR+ +L
Sbjct: 12 LTQDAYDKLRAELESLKGPVRQEIIARISSARDEGDLKENGAYHAAREEQGKVEGRIRQL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV------ 120
E+++ RAEV + G +VE G Y+ VGD E +V++ L+
Sbjct: 72 EDVLRRAEVGETPPNDG----------VVE--PGMVVTYRFVGDAEDEVETFLLGAREIE 119
Query: 121 -------SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SP+ A+ GK GD +S AP G++ LQV+ +
Sbjct: 120 PEGLTVYSPQSPLGSAINGKAKGDTVSYLAPNGKE----LQVVIV 160
>gi|255068272|ref|ZP_05320127.1| transcription elongation factor GreB [Neisseria sicca ATCC 29256]
gi|255047464|gb|EET42928.1| transcription elongation factor GreB [Neisseria sicca ATCC 29256]
Length = 163
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L
Sbjct: 9 ITPVGWQALKDELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDHRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V++ + D++ FGATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLEAAVVVNPELREATDQVFFGATVGLL-RGDGREQTVKIVGVDEIDTAQNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V +I
Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|148654263|ref|YP_001274468.1| transcription elongation factor GreA [Roseiflexus sp. RS-1]
gi|229485907|sp|A5UPG5|GREA_ROSS1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|148566373|gb|ABQ88518.1| transcription elongation factor GreA [Roseiflexus sp. RS-1]
Length = 157
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T G +++ EL + R I + I+ A+ GD+SE+ EY+ AK Q
Sbjct: 1 MSDKPAYLTRDGRARLEAELEELVTKGRKEIAERINAAKELGDISESGEYEDAKNQQAHL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ E+++I+ RA++ID + G+ V++ ++ + IVG EA G
Sbjct: 61 EGRIREIKSILARAQIIDEENGDNHEVRIGSRVTVRIDGEDGEETWTIVGSTEAKPSEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPI AL+GK ++V P G I+ +
Sbjct: 121 ISNESPIGSALLGKRPRQKVTVETPSGTMKLTIVDI 156
>gi|284036025|ref|YP_003385955.1| GreA/GreB family elongation factor [Spirosoma linguale DSM 74]
gi|283815318|gb|ADB37156.1| GreA/GreB family elongation factor [Spirosoma linguale DSM 74]
Length = 171
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 80/152 (52%), Gaps = 14/152 (9%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G ++ E ++E A A L++ E + ++L LN G++A L
Sbjct: 31 VTPRGLAMLRDEFEKLEKEH----------ALAQTQLTD--ENERTRQLALLN-GQIAAL 77
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGLVSISSP 125
I A+V+++ D + FGATV+L +++G + IVG EAD G ++ +P
Sbjct: 78 NQRIATAKVVNMQDHPLDEVRFGATVTLSSQSTGKADQQLTIVGVDEADAIHGRIAFPAP 137
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IAR L+GK++GD I++ P GE EI + +
Sbjct: 138 IARLLLGKKVGDFITLRTPRGENALEITSIYY 169
>gi|313679936|ref|YP_004057675.1| grea/greb family elongation factor [Oceanithermus profundus DSM
14977]
gi|313152651|gb|ADR36502.1| GreA/GreB family elongation factor [Oceanithermus profundus DSM
14977]
Length = 156
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 91/159 (57%), Gaps = 9/159 (5%)
Query: 1 MVDKIPVTSKGFDKIQQEL--RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ +T G++++Q EL ++ EE RI++ E+ + D ++ +A +E +
Sbjct: 1 MAREVKLTKAGYERLQLELAEEKKRLEEATRILQEQMES--FEDYEDSGLEEAKREKAQI 58
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV--Q 116
E R+ LE+I+ RA +I+ + GD++ G+ V + ++ +G+ QIV EA V +
Sbjct: 59 -EARVDALEDILHRAVIIE--SAEGDKVTLGSVVVVQDEKTGESLTLQIVAPAEATVLEE 115
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
VS SP+ +AL+G++ GD + V+ P G++ Y IL V
Sbjct: 116 PMRVSDESPLGKALLGRKEGDKVRVDTPSGKRRYRILSV 154
>gi|254804573|ref|YP_003082794.1| Transcription elongation factor [Neisseria meningitidis alpha14]
gi|254668115|emb|CBA04682.1| Transcription elongation factor [Neisseria meningitidis alpha14]
Length = 163
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L
Sbjct: 9 ITPAGWQALKNELYRLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A VID + D++ F ATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLEAAVVIDPELREATDQVFFSATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V +I
Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|197122163|ref|YP_002134114.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
gi|196172012|gb|ACG72985.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
Length = 169
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 76/139 (54%), Gaps = 3/139 (2%)
Query: 18 ELRWRQQEERPRIIKAISEARA-YGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
E+R+ E + + +A++ RA GD + + + L L+ R+A L+ + V+
Sbjct: 27 EVRYVTPEGQAALREALARLRADRGDAARLPDAERPARLGELD-ARIAALDATLGALTVL 85
Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136
++ FG V+ VE+ G + +++VG EAD + GL+S SP+ARAL+G+ G
Sbjct: 86 GPEATPEGQVGFGTWVT-VEEEDGRRVTWRLVGPDEADARRGLISAGSPVARALLGRRAG 144
Query: 137 DIISVNAPGGEKTYEILQV 155
D++ VN PGGE ++ V
Sbjct: 145 DVVEVNRPGGEAELTVVAV 163
>gi|15806181|ref|NP_294886.1| transcription elongation factor [Deinococcus radiodurans R1]
gi|6458901|gb|AAF10735.1|AE001965_9 transcription elongation factor [Deinococcus radiodurans R1]
Length = 158
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 88/155 (56%), Gaps = 1/155 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ + +T +G ++++++L++ + R +I + + +A GDL E+A Y A+ Q+ NE +
Sbjct: 4 EPVRMTRQGKERLEEQLQYLKTTRREQISEYMGKAIEDGDLRESAAYDEARMQQSENEAK 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+AE+E + RA+++ + + GA V +VE ++ +IVG E DV G +S
Sbjct: 64 IAEIEAQLERAQIMKDEEIDTSAVGVGARV-IVEDAQNKQRTLEIVGSFEVDVLKGKISD 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SP+ +AL+GK G+ P G + +++ V +
Sbjct: 123 ASPMGQALLGKRPGESAVWPGPKGNVSLKVISVEY 157
>gi|241759774|ref|ZP_04757874.1| transcription elongation factor GreB [Neisseria flavescens SK114]
gi|241319782|gb|EER56178.1| transcription elongation factor GreB [Neisseria flavescens SK114]
Length = 163
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L
Sbjct: 9 ITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D+I F ATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLEAAVVVDPEAREATDQIFFSATVGLL-RGDGREQTVKIVGVDEIDTAKNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR+LI GD + ++ P G + EIL V +I
Sbjct: 128 LARSLIKAREGDEVVLDTPEGREVIEILSVEYI 160
>gi|254283435|ref|ZP_04958403.1| transcription elongation factor GreB [gamma proteobacterium
NOR51-B]
gi|219679638|gb|EED35987.1| transcription elongation factor GreB [gamma proteobacterium
NOR51-B]
Length = 168
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 80/149 (53%), Gaps = 1/149 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G ++ EL+ +EERP + A+ A GD SEN +Y K+ + R+ L
Sbjct: 15 ITPEGEAALRAELQALWKEERPVVTAAVQAAAGNGDRSENGDYIYGKKRLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ + FGA V L E G++ +++VG E D+Q+G +S SP+
Sbjct: 75 RKRLEELTVVRDPPSDRGKAYFGAWVDL-ENPDGERVTWRVVGPDEFDLQAGKLSCDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
RAL+GK + I++++P G++ + +L V
Sbjct: 134 GRALLGKPIDSEITIDSPSGDQYWYLLDV 162
>gi|196232168|ref|ZP_03131023.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
gi|196223890|gb|EDY18405.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
Length = 169
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 1/113 (0%)
Query: 43 LSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK 102
L E E + +++ RM L + AEVI IS GD + FG V+ + G +
Sbjct: 54 LEETGEGEISRDELRRVTSRMQALSQRLADAEVIAISESRGDEVRFGMFVT-IRDAGGVE 112
Query: 103 KNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
Y+IVG E D+++G +S SP+A+A++G+++GD++ AP GEK I+ V
Sbjct: 113 DEYRIVGVDEVDLEAGWISWLSPLAQAIVGRKIGDVVQFQAPAGEKKLHIVAV 165
>gi|218296574|ref|ZP_03497302.1| GreA/GreB family elongation factor [Thermus aquaticus Y51MC23]
gi|218243116|gb|EED09648.1| GreA/GreB family elongation factor [Thermus aquaticus Y51MC23]
Length = 156
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 93/160 (58%), Gaps = 11/160 (6%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRI---IKAISEARAYGDLSENAEYQAAKELQN 57
M ++ +T G++++ ++L ++ER R+ K + E D +++ +AAK+ +
Sbjct: 1 MAREVKLTKAGYERLMKQL----EQERERLQEATKILQELMESSDDYDDSGLEAAKQEKA 56
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
E R+ LE++++RA +++ T G+ I G+ V L + +G++ + Q+V EA V
Sbjct: 57 RIEARIDSLEDVLSRAVILEEGT--GEVIGLGSVVELEDPATGERLSVQVVSPAEASVLE 114
Query: 118 GLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ IS SP+ +AL+G +GD++S++ P G+K + ++ V
Sbjct: 115 TPMKISDASPMGKALLGHRVGDVLSLDTPKGKKEFRVVAV 154
>gi|297572051|ref|YP_003697825.1| GreA/GreB family elongation factor [Arcanobacterium haemolyticum
DSM 20595]
gi|296932398|gb|ADH93206.1| GreA/GreB family elongation factor [Arcanobacterium haemolyticum
DSM 20595]
Length = 159
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 6/150 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D ++ + FD++ EL + R I I EAR+ GDL EN Y AA+E Q+ E
Sbjct: 1 MADTTWLSQETFDRLSAELEHLKTTGRTDIATKIEEARSEGDLRENGGYHAAREEQSKME 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD--VQSG 118
GR+ EL ++ AEV D + + + +A G ++ E N +KK ++G +EA V
Sbjct: 61 GRIQELTYLLEHAEVGD-APVELNEVAPGLVIT-AEVNGKEKKF--LLGSREAAEFVDID 116
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK 148
+ ++P+ A++GK++GD S AP G++
Sbjct: 117 VYPETAPLGSAIMGKKVGDETSYTAPNGKE 146
>gi|291613395|ref|YP_003523552.1| transcription elongation factor GreB [Sideroxydans lithotrophicus
ES-1]
gi|291583507|gb|ADE11165.1| transcription elongation factor GreB [Sideroxydans lithotrophicus
ES-1]
Length = 186
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ ++++E ERP +++ +S A + GD SEN +Y K+ + R+ L
Sbjct: 31 ITPEGYRRLKEEYMQLLDVERPALVQTVSWAASNGDRSENGDYIYGKKRLREIDRRLRFL 90
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ ++VID + G +++ FGATV++ + G ++ Y IVG EA+ G +S SP
Sbjct: 91 AKRLENSQVIDPAQRQGCEQVFFGATVTVCHSD-GTERTYSIVGIDEANASKGHISWVSP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+AR L+ D + + P G + +++V +
Sbjct: 150 LARTLLKARADDAVILQLPEGVEELVVIEVSY 181
>gi|90109221|pdb|2ETN|A Chain A, Crystal Structure Of Thermus Aquaticus Gfh1
gi|90109222|pdb|2ETN|B Chain B, Crystal Structure Of Thermus Aquaticus Gfh1
gi|90109223|pdb|2ETN|C Chain C, Crystal Structure Of Thermus Aquaticus Gfh1
gi|18034643|gb|AAL57610.1|AF456233_1 anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
aquaticus]
Length = 157
Score = 70.9 bits (172), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 93/160 (58%), Gaps = 11/160 (6%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRI---IKAISEARAYGDLSENAEYQAAKELQN 57
M ++ +T G++++ ++L ++ER R+ K + E D +++ +AAK+ +
Sbjct: 1 MAREVKLTKAGYERLMKQL----EQERERLQEATKILQELMESSDDYDDSGLEAAKQEKA 56
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
E R+ LE++++RA +++ T G+ I G+ V L + +G++ + Q+V EA V
Sbjct: 57 RIEARIDSLEDVLSRAVILEEGT--GEVIGLGSVVELEDPATGERLSVQVVSPAEASVLE 114
Query: 118 GLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ IS SP+ +AL+G +GD++S++ P G+K + ++ +
Sbjct: 115 NPMKISDASPMGKALLGHRVGDVLSLDTPKGKKEFRVVAI 154
>gi|225075604|ref|ZP_03718803.1| hypothetical protein NEIFLAOT_00620 [Neisseria flavescens
NRL30031/H210]
gi|224953026|gb|EEG34235.1| hypothetical protein NEIFLAOT_00620 [Neisseria flavescens
NRL30031/H210]
Length = 163
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+ L
Sbjct: 9 ITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D++ F ATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLEAAVVVDPEAREATDQVFFSATVGLL-RGDGREQTVKIVGVDEIDTAKNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR+LI GD + ++ P G + EIL V +I
Sbjct: 128 LARSLIKAREGDEVVLDTPEGREVIEILSVEYI 160
>gi|297620326|ref|YP_003708463.1| transcription elongation factor greA [Waddlia chondrophila WSU
86-1044]
gi|297375627|gb|ADI37457.1| transcription elongation factor greA [Waddlia chondrophila WSU
86-1044]
Length = 721
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G+ K Q+ ++ E K + EAR++GDL EN+EY+ A E ++ + M L
Sbjct: 573 TEEGYRKTQERVKRIATVEMVENAKEVEEARSHGDLRENSEYKFACEKRSRLQSEMKMLS 632
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
++ A V+ + G V VE+ SG K+ + I+G EAD+ +G++S S IA
Sbjct: 633 KQLSAARVLTPEDVDSSIAGVGCIVE-VEEPSGAKEQFTILGPWEADIDNGIISYQSQIA 691
Query: 128 RALIGKELGD 137
+A+ G ++GD
Sbjct: 692 QAMSGHKIGD 701
>gi|261377902|ref|ZP_05982475.1| transcription elongation factor GreB [Neisseria cinerea ATCC 14685]
gi|269145757|gb|EEZ72175.1| transcription elongation factor GreB [Neisseria cinerea ATCC 14685]
Length = 163
Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L
Sbjct: 9 ITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D++ F ATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLEAAVVVDPELREATDQVFFSATVGLL-RGDGREQTVKIVGVDEIDTAQNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V +I
Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|153004515|ref|YP_001378840.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
gi|152028088|gb|ABS25856.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
Length = 168
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 77/149 (51%), Gaps = 16/149 (10%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G ++QEL +A+ +ARA + + E+ A L L E R A +
Sbjct: 31 VTPEGQAALRQEL------------EALRDARA--EAARLPEHARAARLAEL-ERRAALV 75
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + V+ + ++ FG V +VE G ++IVG EAD + G+VS+ SP+
Sbjct: 76 EGTLAALTVLGPESALEGKVGFGTWV-VVEDEDGRALTWRIVGPDEADPRRGMVSVHSPV 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+G E GD + V P G + Y +++V
Sbjct: 135 ARALLGHEAGDDVEVELPAGRRGYSVIEV 163
>gi|329948133|ref|ZP_08295005.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
170 str. F0386]
gi|328522866|gb|EGF49971.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
170 str. F0386]
Length = 161
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 76/143 (53%), Gaps = 7/143 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++ EL R+ ER I + + AR GDL ENA Y AA+E LNE R+ +L
Sbjct: 10 LTQEAYDRLSAELEHRKTTERKEIAQRVEAARQEGDLRENAGYHAAREEAGLNEARIIQL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSG--LVSIS 123
E + A++ + + D + A + K +G ++ + + G + DV G + S
Sbjct: 70 EETLENAQIGE----AADDGSISAGTIVTAKVAGKEQVFALGGQEITEDVPDGVKVFSPD 125
Query: 124 SPIARALIGKELGDIISVNAPGG 146
+P+ +AL+G GD ++ AP G
Sbjct: 126 APLGQALMGHRAGDTVAYEAPTG 148
>gi|319942272|ref|ZP_08016587.1| transcription elongation factor GreB [Sutterella wadsworthensis
3_1_45B]
gi|319804145|gb|EFW01045.1| transcription elongation factor GreB [Sutterella wadsworthensis
3_1_45B]
Length = 185
Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 73/139 (52%), Gaps = 8/139 (5%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS-GD 84
ERP ++ ++ A + GD SEN +Y K+ + R+ L I AEV+D + D
Sbjct: 41 ERPDVVNVVAWAASNGDRSENGDYLYGKKRLREIDRRIRFLNKRIESAEVVDPAVHPETD 100
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV--- 141
++ FGATV L G+++ +IVG EAD + G VS SPIAR + + GD + +
Sbjct: 101 QVFFGATV-LYCNQRGEERKIRIVGIDEADAEHGDVSWISPIARVFLRRHEGDEVKLPTP 159
Query: 142 ---NAPGGEKTYEILQVLW 157
P G T EIL+V +
Sbjct: 160 ATSTHPAGVDTLEILEVTY 178
>gi|227876654|ref|ZP_03994763.1| elongation factor GreA [Mobiluncus mulieris ATCC 35243]
gi|269976185|ref|ZP_06183181.1| transcription elongation factor GreA [Mobiluncus mulieris 28-1]
gi|306817605|ref|ZP_07451348.1| transcription elongation factor GreA [Mobiluncus mulieris ATCC
35239]
gi|307699804|ref|ZP_07636855.1| putative transcription elongation factor GreA [Mobiluncus mulieris
FB024-16]
gi|227842551|gb|EEJ52751.1| elongation factor GreA [Mobiluncus mulieris ATCC 35243]
gi|269935514|gb|EEZ92052.1| transcription elongation factor GreA [Mobiluncus mulieris 28-1]
gi|304649647|gb|EFM46929.1| transcription elongation factor GreA [Mobiluncus mulieris ATCC
35239]
gi|307614842|gb|EFN94060.1| putative transcription elongation factor GreA [Mobiluncus mulieris
FB024-16]
Length = 161
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 77/155 (49%), Gaps = 14/155 (9%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T FD++Q EL R R I K I AR GDL EN Y AA++ Q NE R+ EL
Sbjct: 10 MTQAAFDRLQSELDERSGSIRAEITKKIDLARREGDLKENGGYHAARDEQAHNETRILEL 69
Query: 67 ENIITRAEV---IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD--VQSGLVS 121
+ I+ AEV D T+S +VE G +K ++G + AD + + S
Sbjct: 70 QEILKHAEVGEATDDGTIS--------PGCVVEAKVGKRKIRFLLGSRVADEGMDIDVFS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
+P+ AL+G GD + AP G+K E+L V
Sbjct: 122 PDAPLGAALLGHREGDQVEYLAPTGKKIQVEVLSV 156
>gi|254492017|ref|ZP_05105195.1| transcription elongation factor GreB [Methylophaga thiooxidans
DMS010]
gi|224462832|gb|EEF79103.1| transcription elongation factor GreB [Methylophaga thiooxydans
DMS010]
Length = 147
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/146 (38%), Positives = 85/146 (58%), Gaps = 10/146 (6%)
Query: 14 KIQQEL--RWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAELENII 70
++ QEL RW ++ E +++A++ A A GD SENAEY KEL+ L+ R+ L+ I
Sbjct: 3 RLNQELSERWARRRE---VVQALAAAAAEGDRSENAEYIYRKKELRELDR-RIRYLQKRI 58
Query: 71 TRAEVI-DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
V+ D+ +G R+ F A V+L E +G++ Y+IVG E D G +S+ SP+ARA
Sbjct: 59 PDLNVVHDVPDDTG-RVFFAAWVTL-ETEAGEEVTYRIVGPDEIDHAKGNISVDSPLARA 116
Query: 130 LIGKELGDIISVNAPGGEKTYEILQV 155
L+GK + D + G K Y IL +
Sbjct: 117 LLGKMIDDDAIIRVEDGRKQYYILAI 142
>gi|91202565|emb|CAJ72204.1| hypothetical protein kustd1459 [Candidatus Kuenenia
stuttgartiensis]
Length = 741
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 83/153 (54%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI VT G++K ++EL + + + EA + GDL ENAEYQAA+E Q +
Sbjct: 585 NKIYVTKHGYEKQKKELDNIMNIQFAENARDLGEAISRGDLRENAEYQAAREKQAQLIEK 644
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L+ + + I+ T+ + ++ G V++ K+ + Y ++G +AD+ ++S
Sbjct: 645 AERLKADLQKIVFIEPYTVKTNIVSPGTKVTIKNKDKETTETYTLLGPWDADIDKNIISY 704
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPI + L+ K+ G+ +++ P E +I+++
Sbjct: 705 LSPIGKGLLNKKTGETVTIQLPENEIVCDIIKI 737
>gi|86158541|ref|YP_465326.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775052|gb|ABC81889.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-C]
Length = 168
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 18 ELRWRQQEERPRIIKAISEARA-YGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
E+R+ E + + +A++ RA D + + + A L +L+ R+A L+ + V+
Sbjct: 27 EVRYVTPEGQAALREALARLRAERADAARLPDAERAPRLADLD-ARVAALDATLGALTVL 85
Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136
++ FG V+ VE+ G + +++VG EAD + GL+S SP+ARAL+G+ G
Sbjct: 86 GPEATPEGQVGFGTWVT-VEEEDGRRVTWRLVGPDEADARRGLISAGSPVARALLGRRAG 144
Query: 137 DIISVNAPGGEKTYEILQV 155
D++ V+ PGGE ++ V
Sbjct: 145 DVVEVHRPGGEAELTVVAV 163
>gi|223936169|ref|ZP_03628082.1| GreA/GreB family elongation factor [bacterium Ellin514]
gi|223895031|gb|EEF61479.1| GreA/GreB family elongation factor [bacterium Ellin514]
Length = 170
Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 14/151 (9%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL Q E+R + A G+ S NA+ E+Q + + + +L
Sbjct: 33 LTPDGAQRLRAELNRLQAEKRSQT--------ATGEFSGNAQ----TEMQLVGQ-HILQL 79
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + AE++ +++ FGATV+ V SG++ Y+IVG E D+ VS SPI
Sbjct: 80 EQSLATAEIVPPPPQPWEQVRFGATVT-VRDESGNETRYRIVGVDETDIDRDWVSWLSPI 138
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALI +G+ + P GEK EI+ + +
Sbjct: 139 ARALINARIGERVHFRFPAGEKQLEIVSITY 169
>gi|115378949|ref|ZP_01466082.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1]
gi|310818253|ref|YP_003950611.1| transcription elongation factor, GreA/GreB family [Stigmatella
aurantiaca DW4/3-1]
gi|115364025|gb|EAU63127.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1]
gi|309391325|gb|ADO68784.1| Transcription elongation factor, GreA/GreB family [Stigmatella
aurantiaca DW4/3-1]
Length = 169
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 20/158 (12%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS--ENAEYQAAKELQNLNE 60
DK +T +G+ +Q+EL AR G + E E A + + E
Sbjct: 26 DKRYITPEGYRALQEEL-----------------ARLLGPEAGEEGQEAWGAADRKRERE 68
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R L + V+ R+ FGA V+L E G + Y+IVG EADV++G +
Sbjct: 69 RRAHFLSETLEEVRVVAPEPSQEGRVFFGAWVTL-EDEEGAEVTYRIVGPDEADVKAGRL 127
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SP+ARAL+GKE+G+ + V P G Y + +V +
Sbjct: 128 SVESPLARALLGKEVGEAVPVERPRGAVEYTLTRVAYT 165
>gi|261392938|emb|CAX50523.1| transcription elongation factor GreB (transcript cleavage factor
GreB) [Neisseria meningitidis 8013]
Length = 163
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 2/153 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++ EL +ERP I++ ++ A GD SEN +Y K + R+ L
Sbjct: 9 ITPARWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRIRFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + D++ FGATV L+ + G ++ +IVG E D +S SP
Sbjct: 69 TKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISWISP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AR LI GD + +N P G + EIL V +I
Sbjct: 128 LARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|313837032|gb|EFS74746.1| transcription elongation factor GreA [Propionibacterium acnes
HL037PA2]
gi|314929380|gb|EFS93211.1| transcription elongation factor GreA [Propionibacterium acnes
HL044PA1]
gi|314971536|gb|EFT15634.1| transcription elongation factor GreA [Propionibacterium acnes
HL037PA3]
gi|328907910|gb|EGG27672.1| transcription elongation factor GreA [Propionibacterium sp. P08]
Length = 168
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 78/149 (52%), Gaps = 6/149 (4%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + +T + FDK+ QEL + + + R I I++AR+ GDLSEN Y AA+E Q E R
Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGKGRTVIANKIADARSEGDLSENGGYHAAREEQGQAEAR 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117
+ +LE ++ AEV + + S D + G+ V++ + + ++G ++ V
Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTVCYFDDESDTDIFLLGSRQVMGLDDSVDI 124
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146
+ S SP+ A++G G+ AP G
Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYKAPNG 153
>gi|320450007|ref|YP_004202103.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
scotoductus SA-01]
gi|320150176|gb|ADW21554.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
scotoductus SA-01]
Length = 156
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 93/160 (58%), Gaps = 11/160 (6%)
Query: 1 MVDKIPVTSKGFDKIQQEL---RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M ++ +T G++++ Q+L R R QE RI++ + E+ D +++ +AAK+ +
Sbjct: 1 MAREVKLTKAGYERLMQQLLQERERLQEA-TRILQELMES---SDDYDDSGLEAAKQEKA 56
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
E R+ LE+I++RA +I+ +T + I G+ V L + +G++ Q+V EA V
Sbjct: 57 RIEARIDSLEDILSRAVIIEGATT--EVIGLGSVVELEDPVTGERLEVQVVSPAEASVLE 114
Query: 118 GLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ IS SP+ +AL+G GD++S++ P G+K + ++ V
Sbjct: 115 TPMKISDASPMGKALLGHREGDVLSLDTPKGKKEFRVVSV 154
>gi|328948722|ref|YP_004366059.1| Transcription elongation factor, GreA/GreB, N-terminal protein
[Treponema succinifaciens DSM 2489]
gi|328449046|gb|AEB14762.1| Transcription elongation factor, GreA/GreB, N-terminal protein
[Treponema succinifaciens DSM 2489]
Length = 914
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 65/110 (59%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P++ I EA+ GDL ENAEY AAKE Q+ ++++L+ ++RA V D +T + ++
Sbjct: 782 PKVAAEIGEAKEKGDLKENAEYIAAKEAQHRLNVQLSKLKEELSRAVVFDPTTATTSLVS 841
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
FG V+L ++ Y I+G E++V G++S SP+ L+ + G+
Sbjct: 842 FGTKVTLHNNLENNEVVYTILGPWESNVDEGIISYLSPLGNNLLDMKNGE 891
>gi|223557977|gb|ACM90983.1| transcription elongation factor GreA [uncultured bacterium URE4]
Length = 112
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 58/100 (58%)
Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
Q L E ++A L+ + A VID S +S D + + V++ N+ K +QIVG+ EAD
Sbjct: 11 QGLLEVKIARLKEKVANARVIDESKLSADTVQLLSKVTVENMNAKMKMQFQIVGESEADF 70
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
GL+S S+PI +AL+G G+++ P G ++IL +
Sbjct: 71 SKGLLSASTPIGKALMGHGKGEVVEAKVPSGIMKFKILDI 110
>gi|159898200|ref|YP_001544447.1| transcription elongation factor GreA [Herpetosiphon aurantiacus
ATCC 23779]
gi|159891239|gb|ABX04319.1| transcription elongation factor GreA [Herpetosiphon aurantiacus
ATCC 23779]
Length = 155
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 7/158 (4%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T +G K++ E+ + R + + I +A+ GD+SE+ EY+ AK Q
Sbjct: 1 MTDKPFYLTKEGRAKLEAEIEELETTGRMEVAERIRQAKELGDISESGEYEDAKNKQAFL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGD--RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
EGR+ E+ NI+ A++I+ GD + G++V+ + G+++ + IVG EA +
Sbjct: 61 EGRIREIRNILNNAQMIE---EDGDNREVRLGSSVT-IRYEDGEEEEWMIVGAAEASPRD 116
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
G +S SPI AL+GK + + P G +L++
Sbjct: 117 GKISNESPIGSALMGKRARQKATASTPSGIMKMTVLKI 154
>gi|239917044|ref|YP_002956602.1| transcription elongation factor GreA [Micrococcus luteus NCTC 2665]
gi|281414493|ref|ZP_06246235.1| transcription elongation factor GreA [Micrococcus luteus NCTC 2665]
gi|239838251|gb|ACS30048.1| transcription elongation factor GreA [Micrococcus luteus NCTC 2665]
Length = 164
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++ +EL R II+ I AR GDL EN Y AA+E Q+ NEGR+AEL
Sbjct: 11 LTQEAYDRLSKELEHISGPGRQEIIERIEAARDEGDLKENGGYHAAREEQSKNEGRIAEL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQS-GLVSIS 123
++++ A V + + G + G V+ V +GD+ + + G++E AD +S + S
Sbjct: 71 KHLLETARVGEAAENDG-AVHPGTVVTAV--VAGDEMTF-LFGNREIAADDESLEVYSER 126
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ A+ G + GD +S AP G
Sbjct: 127 SPLGEAINGAKQGDKVSYTAPNG 149
>gi|289705947|ref|ZP_06502321.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Micrococcus luteus SK58]
gi|289557284|gb|EFD50601.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Micrococcus luteus SK58]
Length = 164
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 7/143 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++ +EL R II+ I AR GDL EN Y AA+E Q+ NEGR+AEL
Sbjct: 11 LTQEAYDRLSKELEHISGPGRQEIIERIEAARDEGDLKENGGYHAAREEQSKNEGRIAEL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQS-GLVSIS 123
++++ A V + + G + G V+ V +GD+ + + G++E AD +S + S
Sbjct: 71 KHLLETARVGEAAENDG-AVHPGTVVTAV--VAGDEMTF-LFGNREIAADDESLEVYSER 126
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ A+ G + GD +S AP G
Sbjct: 127 SPLGEAINGAKKGDKVSYTAPNG 149
>gi|257138318|ref|ZP_05586580.1| transcription elongation factor GreB [Burkholderia thailandensis
E264]
Length = 166
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL E RP ++K +S A + GD SEN +Y K + R+ L
Sbjct: 31 ITPAGHKRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRIRFL 90
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+D S + D++ FGATV ++ G + IVG E D+ G VS SP
Sbjct: 91 TKRLDLAEVVDASRQENADQVFFGATVDYATQD-GIEHTVTIVGIDEVDLDRGHVSWISP 149
Query: 126 IARALIGKELGDIIS 140
IA AL+ +GD ++
Sbjct: 150 IASALLKARVGDTVT 164
>gi|46445720|ref|YP_007085.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Candidatus Protochlamydia amoebophila UWE25]
gi|46399361|emb|CAF22810.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 723
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 83/153 (54%), Gaps = 5/153 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++I T +G+ KIQ +R E + I ARA GDL EN+E++ A+E + +
Sbjct: 570 EEIWTTEEGYLKIQDRIRQIGTVEVVENAREIEAARALGDLRENSEFKFAQERRARLQSE 629
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L RA +I + D + G+ + L++ + G K Y I+G +AD + ++S+
Sbjct: 630 LKTLSEQFGRARIITPDDILTDEVGIGSVIDLID-SQGQKIRYSILGPWDADPEKNILSL 688
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S A+A+IGK++GD ++T+++L +
Sbjct: 689 NSKFAQAMIGKKIGDQFQFK----DETFKVLSL 717
>gi|210610359|ref|ZP_03288364.1| hypothetical protein CLONEX_00554 [Clostridium nexile DSM 1787]
gi|210152509|gb|EEA83515.1| hypothetical protein CLONEX_00554 [Clostridium nexile DSM 1787]
Length = 103
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 59/96 (61%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ E+E I+ AEV+ + D+I G TVSL + ++ Y+IVG EA+ +G
Sbjct: 4 EARIEEIEKILKNAEVVVEDEVDFDKINVGCTVSLYDVEFEEEVEYKIVGSTEANSLAGK 63
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +ALIGK++GD + V A G YE+L++
Sbjct: 64 ISNESPLGKALIGKKVGDKVEVEAQAGIIEYEVLKI 99
>gi|284033490|ref|YP_003383421.1| transcription elongation factor GreA [Kribbella flavida DSM 17836]
gi|283812783|gb|ADB34622.1| transcription elongation factor GreA [Kribbella flavida DSM 17836]
Length = 169
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+D+++ EL + R I + ISEAR GDL EN Y AAK+ Q E R+ +L
Sbjct: 12 LTQDGYDQLKSELEHLKGPARAEITQRISEARDEGDLKENGGYHAAKDEQGKIEARIRQL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-----ADVQSGLVS 121
E+++ RA V + G + G VS+ D + + ++G +E V + S
Sbjct: 72 EDMLRRARVGETPKDDG-VVEPGMKVSITFAGDDDVETF-LLGSRELLALDTSVDIDVYS 129
Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEIL 153
SP+ A++GK+ GD + AP G+ T EI+
Sbjct: 130 PQSPLGAAIMGKKKGDKATYEAPNGKDVTVEIV 162
>gi|89901919|ref|YP_524390.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118]
gi|89346656|gb|ABD70859.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118]
Length = 187
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+ +++ EL +RP++++A+ A + GD SEN +Y K+ + R+ L
Sbjct: 32 ITPQGYARLRGELLDLIDNQRPQVVEAVYWAASNGDRSENGDYIYGKKRLREIDRRIRFL 91
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V D + G ++I FGA V+ VE +G ++ I+G EAD G VS SP
Sbjct: 92 TQRLEIAQVTDPALHHGSEQIFFGAHVTYVEA-AGTARSVTILGIDEADSALGQVSWVSP 150
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IAR L+ +GD + + P G E++ V
Sbjct: 151 IARTLLQARVGDELQLLTPVGRVEIEVIGV 180
>gi|213965457|ref|ZP_03393652.1| transcription elongation factor GreA [Corynebacterium amycolatum
SK46]
gi|213951841|gb|EEB63228.1| transcription elongation factor GreA [Corynebacterium amycolatum
SK46]
Length = 170
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 81/147 (55%), Gaps = 9/147 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +DK++ EL E RP I I+E R GDL ENA Y AA+E Q E R+ L
Sbjct: 11 LTQESYDKLKSELE-ALYENRPVIAAEINERREEGDLKENAGYDAAREQQGQEEARIRYL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVS 121
E+++ RA V +I SG +A TV V + GD+ + + ++G + AD + S
Sbjct: 70 EDLLQRATVGEIPQESG--VALVGTVVHVYYD-GDEDDTETFLIGTRGADSSNPNLETYS 126
Query: 122 ISSPIARALIGKELGDIISVNAPGGEK 148
SP+ +AL+G + G+ + +P G++
Sbjct: 127 TDSPLGKALVGAKEGETRTYTSPSGDE 153
>gi|150377254|ref|YP_001313849.1| transcription elongation factor regulatory protein [Sinorhizobium
medicae WSM419]
gi|150031801|gb|ABR63916.1| GreA/GreB family elongation factor [Sinorhizobium medicae WSM419]
Length = 160
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 71/115 (61%), Gaps = 13/115 (11%)
Query: 49 YQAAKELQNLNEGR---MAELENIITRAEVIDISTM-----SGDRIAFGATVSLVEKNSG 100
Y A ++++NE R L ++ AE + + + S D +AFG+TV+ ++ G
Sbjct: 50 YDATSTIEDVNERRRQAANPLRDMRYFAERVRTAQLVPGPVSFDAVAFGSTVTF-SRDDG 108
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
++Y+IVG+ EAD +SG +S +SP+ARAL+GK +GD++SV G++ E+L +
Sbjct: 109 RVQSYRIVGEDEADPRSGSISYASPVARALMGKAVGDVVSV----GDQELEVLAI 159
>gi|297538325|ref|YP_003674094.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
gi|297257672|gb|ADI29517.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
Length = 165
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN+I +ID +T D + FGATV+ VE G+ + IVG+ EAD+ VS SP
Sbjct: 79 LENVI----LIDPTTQPKDTVLFGATVN-VEDEEGNPHQFTIVGEDEADIALNKVSWVSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA+ALIG ++G+ +S P G EIL +
Sbjct: 134 IAKALIGHKVGETVSWQRPAGNLNLEILAI 163
>gi|220916942|ref|YP_002492246.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-1]
gi|219954796|gb|ACL65180.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-1]
Length = 168
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 77/139 (55%), Gaps = 3/139 (2%)
Query: 18 ELRWRQQEERPRIIKAISEARA-YGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
E+R+ E + + +A++ RA D + + + A L +L+ R+A L+ + V+
Sbjct: 27 EVRYVTPEGQAALREALARLRAERADAARLPDAERAPRLADLD-ARIAALDATLGALTVL 85
Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136
++ FG V+ VE+ G + +++VG EAD + GL+S SP+ARAL+G+ G
Sbjct: 86 GPEATPEGQVGFGTWVT-VEEEDGRRVTWRLVGPDEADARRGLISAGSPVARALLGRRAG 144
Query: 137 DIISVNAPGGEKTYEILQV 155
+++ V+ PGGE ++ V
Sbjct: 145 EVVEVHRPGGEAELTVVAV 163
>gi|254518202|ref|ZP_05130258.1| GreA/GreB family elongation factor [Clostridium sp. 7_2_43FAA]
gi|226911951|gb|EEH97152.1| GreA/GreB family elongation factor [Clostridium sp. 7_2_43FAA]
Length = 154
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+++EL +R +R I K + A A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENIKKLREELEYRMTVKRAEIAKEKAIAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFG--ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
N+I+ A +ID + + A + +E + D V D +D ++ +SI S
Sbjct: 65 LNMISTATIIDDEEIDKSTLGINSKAKIKFIEDDFEDVVTLVTVMD--SDPENMCISIES 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ AL GK++GDI+ V+AP + + EIL++L
Sbjct: 123 DLGLALKGKKVGDIVEVDAPEDKYSVEILEIL 154
>gi|322435432|ref|YP_004217644.1| transcription elongation factor GreB [Acidobacterium sp. MP5ACTX9]
gi|321163159|gb|ADW68864.1| transcription elongation factor GreB [Acidobacterium sp. MP5ACTX9]
Length = 200
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++++ E + ++RP +++ ++ A + GD SENA+YQ +K +GR+ L
Sbjct: 24 ITPGGIERLKAERHFLLTKDRPAVVQVVAWAASNGDRSENADYQYSKRRLRQIDGRVRFL 83
Query: 67 ENIITRAEVIDI-STMSGDRIA---FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
I AEVID + +G R FGATV +G + IVG E ++ +S
Sbjct: 84 TKRIEAAEVIDPEAPRTGQRATRAFFGATVRYANA-AGIVRVVSIVGTDEVNLDRNHISW 142
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SP+ RAL+ D + ++APGG +T +L+V +
Sbjct: 143 ASPLGRALMKAGEDDEVVLHAPGGTETLTVLEVRY 177
>gi|218290642|ref|ZP_03494733.1| transcription elongation factor GreA [Alicyclobacillus
acidocaldarius LAA1]
gi|218239307|gb|EED06505.1| transcription elongation factor GreA [Alicyclobacillus
acidocaldarius LAA1]
Length = 133
Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 78/133 (58%), Gaps = 1/133 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T +G K+++EL + +R + + I A +YGD+SEN+EY+ AK Q
Sbjct: 1 MADKEVLLTPEGLRKLEEELELLKSVKRREVAERIKVAISYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE + A VI+ + + ++ G+TV +++ + ++ Y IVG EA+
Sbjct: 61 EGRIMTLEKQLRNARVINEDEVDTNVVSIGSTVKVLDLDLDEEVEYTIVGSAEANPAENK 120
Query: 120 VSISSPIARALIG 132
+S SP+ +AL+G
Sbjct: 121 ISNESPVGKALLG 133
>gi|119505414|ref|ZP_01627487.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2080]
gi|119458692|gb|EAW39794.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2080]
Length = 169
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G ++++EL+ + ERP + A+ A A GD SEN +Y K+ + R+ L
Sbjct: 15 ITQEGEQRLREELKELWKVERPVVTAAVQAAAANGDRSENGDYIYGKKRLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ ++ FGA V+L E G ++IVG E D+ + +S SP+
Sbjct: 75 RKRLDELIVVTAGPTDPEKAYFGAYVTL-ENTEGQVHQWRIVGPDEFDISAQKLSCDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
RAL+GK + + + +P G KT+ +++V +
Sbjct: 134 GRALLGKPIDAEVVIESPSGPKTWHLIEVRY 164
>gi|13357864|ref|NP_078138.1| transcription elongation factor [Ureaplasma parvum serovar 3 str.
ATCC 700970]
gi|170762258|ref|YP_001752386.1| transcription elongation factor GreA [Ureaplasma parvum serovar 3
str. ATCC 27815]
gi|171920165|ref|ZP_02691337.2| transcription elongation factor GreA [Ureaplasma parvum serovar 1
str. ATCC 27813]
gi|183508821|ref|ZP_02958274.1| transcription elongation factor GreA [Ureaplasma parvum serovar 14
str. ATCC 33697]
gi|186701835|ref|ZP_02971503.1| transcription elongation factor GreA [Ureaplasma parvum serovar 6
str. ATCC 27818]
gi|11132421|sp|Q9PQI7|GREA_UREPA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189042253|sp|B1AIU2|GREA_UREP2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|11279752|pir||G82906 transcription elongation factor UU304 [imported] - Ureaplasma
urealyticum
gi|6899280|gb|AAF30713.1|AE002128_1 transcription elongation factor [Ureaplasma parvum serovar 3 str.
ATCC 700970]
gi|168827835|gb|ACA33097.1| transcription elongation factor GreA [Ureaplasma parvum serovar 3
str. ATCC 27815]
gi|171902538|gb|EDT48827.1| transcription elongation factor GreA [Ureaplasma parvum serovar 1
str. ATCC 27813]
gi|182675786|gb|EDT87691.1| transcription elongation factor GreA [Ureaplasma parvum serovar 14
str. ATCC 33697]
gi|186701123|gb|EDU19405.1| transcription elongation factor GreA [Ureaplasma parvum serovar 6
str. ATCC 27818]
Length = 156
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 72/129 (55%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S D ++
Sbjct: 27 PAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVLRSTDEVS 86
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
G+T+ + ++ +VG ++D + +SI +P+ +AL+ ++ G ++V+
Sbjct: 87 IGSTIEIYNYQKDCEEVITLVGSMDSDPFANKISIDTPLGKALVKQKKGTEVTVHTLASP 146
Query: 148 KTYEILQVL 156
+I++++
Sbjct: 147 YKVKIIKII 155
>gi|171920968|ref|ZP_02932102.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 13 str. ATCC 33698]
gi|185179173|ref|ZP_02555812.2| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188024325|ref|ZP_02570283.2| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188518634|ref|ZP_02557002.2| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|188524482|ref|ZP_02558390.2| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|195867660|ref|ZP_03079662.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|198273725|ref|ZP_03206260.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|225551554|ref|ZP_03772500.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
gi|171902992|gb|EDT49281.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 13 str. ATCC 33698]
gi|184208908|gb|EDU05951.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188019005|gb|EDU57045.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188997849|gb|EDU66946.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|195659661|gb|EDX53041.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|195660717|gb|EDX53972.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|198249753|gb|EDY74534.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|225379369|gb|EEH01734.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
Length = 156
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 72/129 (55%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S D ++
Sbjct: 27 PAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVMRSTDEVS 86
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
G+T+ + K+ +VG ++D + +S+ +P+ +A++ ++ G ++V+
Sbjct: 87 IGSTIEIYNYQKDHKEVITLVGSMDSDPFANKISMDTPLGKAVVKQKEGSEVTVHTLASP 146
Query: 148 KTYEILQVL 156
+I++++
Sbjct: 147 YKVKIIKII 155
>gi|121603719|ref|YP_981048.1| transcription elongation factor GreB [Polaromonas naphthalenivorans
CJ2]
gi|120592688|gb|ABM36127.1| transcription elongation factor GreB [Polaromonas naphthalenivorans
CJ2]
Length = 183
Score = 67.4 bits (163), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+++++ EL ERP+++ + A + GD SEN +Y K+ + R+ L
Sbjct: 30 ITPQGYNRLRVELLDLIDSERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFL 89
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AE+ + G D++ FGATV+ + + G ++ I+G EA G +S SP
Sbjct: 90 TKRLEIAEISNPCVHHGNDQVFFGATVTYGD-DEGLERTVTILGVDEAISAMGQISWISP 148
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+A AL+ +GD +++ P G + E+L+V
Sbjct: 149 VASALLKARVGDEVTLVTPQGTQLLEVLKV 178
>gi|229918722|ref|YP_002887368.1| GreA/GreB family elongation factor [Exiguobacterium sp. AT1b]
gi|229470151|gb|ACQ71923.1| GreA/GreB family elongation factor [Exiguobacterium sp. AT1b]
Length = 152
Score = 67.0 bits (162), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 2/119 (1%)
Query: 37 ARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVE 96
AR + D E+ Y A E + EL +++ A +++ ++ + + FG V + E
Sbjct: 34 ARKFCDFREDVTYTEAVRQYERIEADILELNHLLDDATIVE--SVQSEVVTFGNRVVIRE 91
Query: 97 KNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ + Y+IV + EAD++ G +S++SP+ R L+G +G I V PGG E+L +
Sbjct: 92 VQQEETERYRIVSEAEADLERGSISVTSPLGRRLMGATMGQTIQVETPGGTIQVEVLHI 150
>gi|225550671|ref|ZP_03771620.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
gi|225379825|gb|EEH02187.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
Length = 156
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 72/129 (55%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S D ++
Sbjct: 27 PAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVMRSTDEVS 86
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
G+T+ + K+ +VG ++D + +S+ +P+ +A++ ++ G ++V+
Sbjct: 87 IGSTIEIYNYQKDRKEVITLVGSMDSDPFANKISMDTPLGKAVVKQKEGSEVTVHTLASP 146
Query: 148 KTYEILQVL 156
+I++++
Sbjct: 147 YKVKIIKII 155
>gi|171463505|ref|YP_001797618.1| transcription elongation factor GreB [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171193043|gb|ACB44004.1| transcription elongation factor GreB [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 168
Score = 67.0 bits (162), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 83/166 (50%), Gaps = 8/166 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K +T G+++I+ EL +R ++K + A + GD SEN +Y K+ +
Sbjct: 1 MEEKNYITLAGYERIKTELLQLLNLDRLEVVKVVHWAASNGDRSENGDYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMS-----GDRIAFGATVS---LVEKNSGDKKNYQIVGDQE 112
R+ L + A V+D S D++ FGA+V+ L +G + + IVG E
Sbjct: 61 RRIRFLNKRLEFAIVVDNSARKSGENDADQVFFGASVTYSALEGPEAGKRTSITIVGVDE 120
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
D+ VS SPIA+ALI +GD + + P G EIL V ++
Sbjct: 121 VDLDKSHVSWVSPIAKALIKSRIGDCVFIQTPTGPTEIEILDVQYL 166
>gi|227494766|ref|ZP_03925082.1| transcription elongation factor GreA [Actinomyces coleocanis DSM
15436]
gi|226831766|gb|EEH64149.1| transcription elongation factor GreA [Actinomyces coleocanis DSM
15436]
Length = 159
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 79/148 (53%), Gaps = 6/148 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + + +T + +D++++EL R +R I I AR GDL EN Y AA++ Q +NE
Sbjct: 1 MSESLWLTQEAYDRLKEELEHRSTIKRQEIATKIDNARQEGDLKENGGYHAARDEQAMNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL- 119
R+ +L NI+ A V +T + D I V E G + + ++G + A + L
Sbjct: 61 TRINQLTNILRDAVV--GATPADDGIVEAGMVVTAEI-MGSQSTF-LLGSRMAGSEDDLE 116
Query: 120 -VSISSPIARALIGKELGDIISVNAPGG 146
SI +PI +AL G ++G+ +S AP G
Sbjct: 117 VYSIDAPIGQALNGHKVGETVSYFAPNG 144
>gi|309810926|ref|ZP_07704726.1| transcription elongation factor GreA [Dermacoccus sp. Ellin185]
gi|308435080|gb|EFP58912.1| transcription elongation factor GreA [Dermacoccus sp. Ellin185]
Length = 163
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 78/151 (51%), Gaps = 13/151 (8%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D++ EL + E R I K I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQDAYDRLSAELEHLKGEGRSDIAKRIEAAREEGDLKENGGYHAAKEEQGKMEARIRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121
E+++ A V + +G I V VE GD + + +I GD + DV S
Sbjct: 71 ESLLRDAVVGEAPKDNG--IVDSGMVVTVEM-FGDTETFLLGSREIAGDADIDV----YS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ A++GK++G+ S +AP G KT E+
Sbjct: 124 EQSPLGEAIMGKKVGEETSYDAPNG-KTIEV 153
>gi|320094368|ref|ZP_08026155.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
178 str. F0338]
gi|319978701|gb|EFW10257.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
178 str. F0338]
Length = 159
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D +T +D + EL+ R + +RP I + I AR GDL EN Y AA+ Q++NE
Sbjct: 1 MADTQWLTQAQYDLLANELKERIEVKRPEIARLIDAARQEGDLRENGGYHAARNEQSMNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118
R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+
Sbjct: 61 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQTF-LLGSRDAGGDLGIQ 116
Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146
+ S +P+ A+IG + GD I AP G
Sbjct: 117 VFSTQAPLGAAVIGHKAGDTIEFEAPTG 144
>gi|209554023|ref|YP_002284702.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
gi|238058241|sp|B5ZBB2|GREA_UREU1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|209541524|gb|ACI59753.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
Length = 156
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 72/129 (55%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S D ++
Sbjct: 27 PAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVMRSTDEVS 86
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
G+T+ + K+ +VG ++D + +S+ +P+ +A++ ++ G ++V+
Sbjct: 87 IGSTIEIYNYQKDHKEVITLVGSMDSDPFANKISMDTPLGKAVVKQKEGSEVTVHTLALP 146
Query: 148 KTYEILQVL 156
+I++++
Sbjct: 147 YKVKIIKII 155
>gi|187735038|ref|YP_001877150.1| GreA/GreB family elongation factor [Akkermansia muciniphila ATCC
BAA-835]
gi|187425090|gb|ACD04369.1| GreA/GreB family elongation factor [Akkermansia muciniphila ATCC
BAA-835]
Length = 615
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 37 ARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVE 96
+RA GDL EN YQ AKE++ + R AELE+ + A D + R A G V+L
Sbjct: 491 SRAEGDLRENGGYQDAKEVEKVLNRRRAELEHALALARGTDFAVTDTSRAAMGTKVTLQP 550
Query: 97 KNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE--KTYEILQ 154
N G+ Y I+G + + + +VS S + + L GK +GD + + G+ K Y I +
Sbjct: 551 LNGGEPVVYTILGAWDTNPEKHIVSYLSQVGKELTGKSVGDQVKIVPMDGDKKKVYTITK 610
Query: 155 V 155
+
Sbjct: 611 I 611
>gi|330836574|ref|YP_004411215.1| Transcription elongation factor, GreA/GreB, N-terminal protein
[Spirochaeta coccoides DSM 17374]
gi|329748477|gb|AEC01833.1| Transcription elongation factor, GreA/GreB, N-terminal protein
[Spirochaeta coccoides DSM 17374]
Length = 897
Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 69/148 (46%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T D + EL + P + K I EAR GDL EN+EY+ KE Q L ++ +L
Sbjct: 745 TQASLDAKRAELDKIMNIDIPEVAKEIGEARELGDLRENSEYKYGKEKQTLLNAQIKKLL 804
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I RA+VI + + FG +SL + Y ++G E++ ++S +P+
Sbjct: 805 EEIDRAQVIQPGAVDTSKTGFGTRISLHDNIEDKDVVYTLMGPWESEPSKNILSFQAPLG 864
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
L+ K +G S + + +L++
Sbjct: 865 TQLMNKTVGQNFSFEINDKKYDFTVLKI 892
>gi|313674502|ref|YP_004052498.1| transcription elongation factor greb [Marivirga tractuosa DSM 4126]
gi|312941200|gb|ADR20390.1| transcription elongation factor GreB [Marivirga tractuosa DSM 4126]
Length = 145
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 67/127 (52%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++GF K+++E + RP + +S A + GD SENA+Y K+ +GR+ L
Sbjct: 19 ITAEGFQKLREEHDHLWKVVRPDVTAKVSWAASLGDRSENADYHYNKKRLREIDGRIRYL 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I +VI ++ FGA V + + G KK +IVG +E +S+ SP+
Sbjct: 79 RKCIDNFKVIHYHPHQEGKVMFGAWVEVENIDRGLKKRLRIVGYEELIGNKDYISMDSPL 138
Query: 127 ARALIGK 133
A+AL+ K
Sbjct: 139 AQALLNK 145
>gi|15895237|ref|NP_348586.1| transcription elongation factor GreA [Clostridium acetobutylicum
ATCC 824]
gi|15024946|gb|AAK79926.1|AE007701_3 Transcription elongation factor GreA [Clostridium acetobutylicum
ATCC 824]
gi|325509383|gb|ADZ21019.1| Transcription elongation factor GreA [Clostridium acetobutylicum EA
2018]
Length = 158
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +DK+++E +R +R I K EA A+GD SENAEY+AAKE N R+ ++
Sbjct: 5 LTKSDYDKLKEEYEYRNTVKRHEIAKKKMEAAAFGDRSENAEYKAAKEEYYHNNRRLGQI 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS---GLVSIS 123
++ A +++ + D + G+ + L++ + + ++V V+ +S+
Sbjct: 65 SRLLKNAIIVEEDKID-DEVNIGSEM-LLKIGADETFKAKLVTTLNISVEDEDIEYISVD 122
Query: 124 SPIARALIGKELGDIISVNAP 144
SP +AL K +GD I VN P
Sbjct: 123 SPFGKALYKKHVGDSIDVNLP 143
>gi|289810362|ref|ZP_06540991.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 65
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 45/62 (72%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIK 63
Query: 65 EL 66
++
Sbjct: 64 DI 65
>gi|284449158|dbj|BAI67350.1| transcription elongation factor [Lactobacillus fermentum]
Length = 303
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 82/149 (55%), Gaps = 9/149 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
+T G+ I++++ +Q+ RP +I + AR GDLSEN EY AK EL++L E +
Sbjct: 20 MTPAGYRAIEEQIEALKQK-RPTLIARLKAARVLGDLSENTEYSTAKRELRHL-ESCLRY 77
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD---QEADVQSGLVSI 122
L+ +T A+VID+S ++A G V++ + ++ YQIVG ++A + +++
Sbjct: 78 LDKQLTYAKVIDVS--DDGKVALGKVVTIRFLDDQEEATYQIVGRYQAEQASLTEEVLAF 135
Query: 123 SSPIARALIGKELGDIIS-VNAPGGEKTY 150
SP+ AL GK + + V G K Y
Sbjct: 136 DSPLGLALKGKYFFHLHNEVTKDFGNKKY 164
>gi|182412163|ref|YP_001817229.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
gi|177839377|gb|ACB73629.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
Length = 166
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 63/102 (61%), Gaps = 6/102 (5%)
Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGD 110
+EL+ L+E R EL+ I+ AE+I S+ + DR + FGA V++ E++ G Y+IVG
Sbjct: 65 RELRKLDE-RARELQQILATAEII--SSPAPDRSIVRFGAKVTVKEED-GTTSTYRIVGI 120
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
E + +G +S SP+A+AL+G +GD I +P G + EI
Sbjct: 121 DETEFYTGGISFQSPLAQALLGASVGDRIQFQSPAGPRQLEI 162
>gi|27382335|ref|NP_773864.1| transcription elongation factor regulatory protein [Bradyrhizobium
japonicum USDA 110]
gi|27355506|dbj|BAC52489.1| transcription elongation factor [Bradyrhizobium japonicum USDA 110]
Length = 162
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 15/116 (12%)
Query: 49 YQAAKELQNLNEGRMAE---------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNS 99
Y+AA+ + ++NE R L + A+VI + S D +AFG+TV+ +
Sbjct: 50 YEAAQAIDDVNEKRRQSAVPLRDARYLTERLRTAQVIP-TPASTDTVAFGSTVTF-SRPD 107
Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
G + Y+IVG+ EAD ++G +S SP+AR+LIGK +GD++ G + EIL +
Sbjct: 108 GRVQTYRIVGEDEADPKAGSISFVSPVARSLIGKAVGDVVG----AGTQEIEILSI 159
>gi|184201417|ref|YP_001855624.1| transcription elongation factor GreA [Kocuria rhizophila DC2201]
gi|183581647|dbj|BAG30118.1| transcription elongation factor GreA [Kocuria rhizophila DC2201]
Length = 165
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++++EL + R I+ I +AR+ GDL EN Y AA+E Q NEGR+ +L
Sbjct: 9 LTQEAYDRLKKELDYIAGPYRQEIVDRIEQARSEGDLKENGGYHAAREEQGKNEGRIVQL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG----LV 120
++ A+V + G A + + + +GD+ + ++G +E D+ G +
Sbjct: 69 TQLLENAQVGEAPADDG---VIEAGMVVTAEIAGDEMTF-LMGSREVAEDLTGGEDLEVF 124
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
S SP+ A+ G ++G+ +S AP G+ T +IL+
Sbjct: 125 SERSPMGAAINGHKVGETVSYQAPNGKDITVKILKA 160
>gi|72160851|ref|YP_288508.1| transcription elongation factor GreA [Thermobifida fusca YX]
gi|71914583|gb|AAZ54485.1| prokaryotic transcription elongation factor GreA [Thermobifida
fusca YX]
Length = 167
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 2/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++ EL + R I I AR GDL EN Y AAKE Q E R+A L
Sbjct: 12 LTQEAYDRLTAELEYLSGPGRIEIADRIEAAREEGDLRENGGYHAAKEEQGKIEARIAHL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++I++ A V G + G TV++ + ++ + + +E+ + S SP+
Sbjct: 72 QSILSNARVGQAPQREG-VVGPGMTVTIKFEGDEEEMTFLLASREESGAPIDVYSPKSPL 130
Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156
A+ GK++G+ ++ P G E T EIL +
Sbjct: 131 GEAINGKKVGEKVTYKLPSGKEATVEILDAV 161
>gi|308176537|ref|YP_003915943.1| transcription elongation factor GreA [Arthrobacter arilaitensis
Re117]
gi|307744000|emb|CBT74972.1| transcription elongation factor GreA [Arthrobacter arilaitensis
Re117]
Length = 165
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 75/145 (51%), Gaps = 12/145 (8%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++Q EL + R I+ I +AR+ GDL EN Y AA+E Q E R+ L
Sbjct: 12 LTQEAYDRLQDELTFLSGPGRAEIVARIEQARSEGDLKENGGYHAAREEQGKAEARILYL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121
++++ RA+V D G + +V +GD+ + ++ GD + +V S
Sbjct: 72 KDLLRRADVGDAPADDG---IVEPGMLVVANIAGDETTFLFGSREVAGDTDLEV----YS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
SPI A+ G ++GD +S AP G
Sbjct: 125 EQSPIGVAVHGAKVGDKLSYLAPNG 149
>gi|269302530|gb|ACZ32630.1| transcription elongation factor GreA [Chlamydophila pneumoniae
LPCoLN]
Length = 722
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
TS+ F +++ +L+ +E K I +AR+ GDL EN+EY+ A E + + + L
Sbjct: 571 TSESFSRMKAKLQSLVGKEMVDNAKEIEDARSLGDLRENSEYKFALEKRARLQEEIRVLS 630
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I RA ++ + D++ G V+L + ++G+ Y I+G +AD S ++S+ S +A
Sbjct: 631 EEINRARILTKDLVFTDKVGVGCKVTL-KGDAGEVVEYTILGPWDADPDSCILSLQSKLA 689
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ ++GK+L D++ + G E +Q +W
Sbjct: 690 QNMLGKKLNDVVILQ--GKEYKISRIQSIW 717
>gi|294786772|ref|ZP_06752026.1| transcription elongation factor GreA [Parascardovia denticolens
F0305]
gi|315226395|ref|ZP_07868183.1| transcription elongation factor GreA [Parascardovia denticolens DSM
10105]
gi|294485605|gb|EFG33239.1| transcription elongation factor GreA [Parascardovia denticolens
F0305]
gi|315120527|gb|EFT83659.1| transcription elongation factor GreA [Parascardovia denticolens DSM
10105]
Length = 158
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 83/142 (58%), Gaps = 7/142 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +DK+++EL +R+ + R I I+ ARA GDLSEN YQAA+E Q NEGR+ EL
Sbjct: 9 LTQEAYDKLKEELTYREGDLREEIKAKIAAARAEGDLSENGGYQAAREEQGKNEGRIQEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--GLVSISS 124
+ ++++ ++ G+ V L + +G++ Y ++G + V + ++S S
Sbjct: 69 TVKLRDSQILKAPKAG--KVGPGSLVVL--EIAGNEMTY-VLGSHDLAVATDFDIISPES 123
Query: 125 PIARALIGKELGDIISVNAPGG 146
PI A+ GK+ GD ++ AP G
Sbjct: 124 PIGAAINGKKKGDTVTYAAPNG 145
>gi|15618651|ref|NP_224937.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila pneumoniae CWL029]
gi|15836273|ref|NP_300797.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila pneumoniae J138]
gi|16752300|ref|NP_444557.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila pneumoniae AR39]
gi|33242100|ref|NP_877041.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila pneumoniae TW-183]
gi|7531133|sp|Q9Z7G4|GREA_CHLPN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|4377048|gb|AAD18880.1| Transcription Elongation Factor [Chlamydophila pneumoniae CWL029]
gi|7188943|gb|AAF37901.1| transcription elongation protein, GreA/GreB family [Chlamydophila
pneumoniae AR39]
gi|8979113|dbj|BAA98948.1| transcription elongation factor [Chlamydophila pneumoniae J138]
gi|33236610|gb|AAP98698.1| GreA [Chlamydophila pneumoniae TW-183]
Length = 722
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 83/150 (55%), Gaps = 3/150 (2%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
TS+ F +++ +L+ +E K I +AR+ GDL EN+EY+ A E + + + L
Sbjct: 571 TSESFSRMKAKLQSLVGKEMVDNAKEIEDARSLGDLRENSEYKFALEKRARLQEEIRVLS 630
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I RA ++ + D++ G V+L + ++G+ Y I+G +AD S ++S+ S +A
Sbjct: 631 EEINRARILTKDLVFTDKVGVGCKVTL-KGDAGEVVEYTILGPWDADPDSCILSLQSKLA 689
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ ++GK+L D++ + G E +Q +W
Sbjct: 690 QNMLGKKLNDVVILQ--GKEYKISRIQSIW 717
>gi|108761121|ref|YP_634997.1| GreA/GreB family transcription elongation factor [Myxococcus
xanthus DK 1622]
gi|108465001|gb|ABF90186.1| transcription elongation factor, GreA/GreB family [Myxococcus
xanthus DK 1622]
Length = 167
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL ++ V++ R+ FGA V L E G Y+IVG E+DV++G +S+ S
Sbjct: 73 ELAAVLEDVRVVEPDASQAGRVFFGAWVEL-EDEDGGPVRYRIVGPDESDVKAGRLSVES 131
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL+GKE+G+ + V+ P G Y + V +
Sbjct: 132 PLARALLGKEVGESVVVDRPRGPVEYTVTAVDY 164
>gi|313201038|ref|YP_004039696.1| grea/greb family elongation factor [Methylovorus sp. MP688]
gi|312440354|gb|ADQ84460.1| GreA/GreB family elongation factor [Methylovorus sp. MP688]
Length = 167
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 15/151 (9%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G +QQ++ +A+ + RA LS + A++ ++ + L
Sbjct: 30 VTPHGLQLLQQDM------------QALEKERAT--LSARKDDPTAQQRLSMINRDLRYL 75
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + A ++D + S +++ FGA V VE + G ++ +QIVG+ EAD+ VS SP+
Sbjct: 76 EARLEAAIIVDPTQQSREQVLFGAHVH-VEDDEGQRQVFQIVGEDEADIAQNKVSWISPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIG + G++++ P G EI+ + +
Sbjct: 135 ARALIGHKRGEVVTWQRPAGNLELEIMDIHY 165
>gi|302338551|ref|YP_003803757.1| transcription elongation factor GreA [Spirochaeta smaragdinae DSM
11293]
gi|301635736|gb|ADK81163.1| transcription elongation factor GreA [Spirochaeta smaragdinae DSM
11293]
Length = 894
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT K F+ +Q+L+ E K I A GDL ENAEY+A KE Q L +M +L
Sbjct: 740 VTRKTFEAKKQQLQHINDVEMKETSKEIGAAIELGDLKENAEYKAGKEKQELLNIQMQKL 799
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ I RA + D + +I+F V+L ++ K+ Y G E++ ++S SP
Sbjct: 800 KDEIDRAVIFDPADRDTSKISFATKVTLENLDTKKKETYSFFGPWESNPNENIISYLSPF 859
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
L + G+ + Y +L++
Sbjct: 860 GGKLWNHKEGEDLEFEINERVYHYSVLKI 888
>gi|116669728|ref|YP_830661.1| GreA/GreB family elongation factor [Arthrobacter sp. FB24]
gi|116609837|gb|ABK02561.1| GreA/GreB family elongation factor [Arthrobacter sp. FB24]
Length = 164
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 80/153 (52%), Gaps = 13/153 (8%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + FD+++ EL R I++ I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 12 LTQEAFDRLKAELDHLSGAGRAEIVQKIEAARQEGDLKENGGYHAAKEEQGKIEARIRQL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121
++ A V + + + D I + +V + +GD++ + +I GD + DV S
Sbjct: 72 TVLLRDAHVGE--SPADDGIVEPGMI-VVARIAGDEETFLLGSREIAGDSDLDV----FS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEIL 153
SP+ A++G + GD +S AP G+ T EIL
Sbjct: 125 EKSPLGSAIVGHKEGDKLSYTAPNGKDITVEIL 157
>gi|152965067|ref|YP_001360851.1| transcription elongation factor GreA [Kineococcus radiotolerans
SRS30216]
gi|151359584|gb|ABS02587.1| transcription elongation factor GreA [Kineococcus radiotolerans
SRS30216]
Length = 165
Score = 64.7 bits (156), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D+++ E E R + K I +AR GDL ENA Y AAKE Q E R+ +L
Sbjct: 12 LTQDAYDRLKAEYDRLSGEGRSELAKRIEQAREEGDLKENAGYHAAKEEQGKQELRIRQL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124
+++ A+V + + GA V++ + +G++ + ++G +E +GL S S
Sbjct: 72 RHLLETAQVGEAPKSVAGEVTLGAVVTV--ELAGEEMRF-LLGSREMGDGAGLDVYSEKS 128
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ A++G++ G+ ++ AP G
Sbjct: 129 PLGAAVLGRQPGEDVTYTAPSG 150
>gi|253998935|ref|YP_003050998.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4]
gi|253985614|gb|ACT50471.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4]
Length = 167
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 79/151 (52%), Gaps = 15/151 (9%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G +QQ++ +A+ + RA LS + A++ ++ + L
Sbjct: 30 VTPHGLYLLQQDM------------QALEKERAT--LSARKDDPTAQQRLSMINRDLRYL 75
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + A ++D + S +++ FGA V VE + G ++ +QIVG+ EAD+ VS SP+
Sbjct: 76 EARLETAIIVDPTQQSREQVLFGAHVH-VEDDEGQRQVFQIVGEDEADIAQNKVSWISPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIG + G++++ P G EI+ + +
Sbjct: 135 ARALIGHKRGEVVTWQRPAGNLELEIMDIHY 165
>gi|269125318|ref|YP_003298688.1| transcription elongation factor GreA [Thermomonospora curvata DSM
43183]
gi|268310276|gb|ACY96650.1| transcription elongation factor GreA [Thermomonospora curvata DSM
43183]
Length = 166
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 77/148 (52%), Gaps = 2/148 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ EL + R I + I AR GDL EN Y AAKE Q EGR+ +L
Sbjct: 12 LTQEAYDRLKAELEYLSGPGRIEIAQKIEAAREEGDLRENGGYHAAKEEQGKIEGRILQL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++I+ + V + G + G TV++ ++ ++ + + +E+ + S SP+
Sbjct: 72 QHILENSRVGEAPRTDG-VVGPGMTVTVAFEDDDEELTFLLASREESGAPIDVYSPQSPL 130
Query: 127 ARALIGKELGDIISVNAPGGEK-TYEIL 153
A+ GK++G+ + P G T EIL
Sbjct: 131 GSAINGKKVGEKATYTLPNGRSMTVEIL 158
>gi|119963879|ref|YP_947068.1| transcription elongation factor GreA [Arthrobacter aurescens TC1]
gi|119950738|gb|ABM09649.1| putative transcription elongation factor GreA [Arthrobacter
aurescens TC1]
Length = 164
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 12/147 (8%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + FD++Q EL R I++ I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 12 LTQEAFDRLQAELDHLSGAGRAEIVQKIEAARQEGDLKENGGYHAAKEEQGKIEARIRQL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121
++ A+V + G + G V V + +GD++ + +I GD + DV S
Sbjct: 72 TALLRDAQVGEAPADDG-IVEPGMLV--VARIAGDEETFLLGSREIAGDSDLDV----FS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGGEK 148
SP+ A+IG + GD +S AP G++
Sbjct: 125 EKSPLGAAIIGHKEGDSLSYVAPNGKE 151
>gi|146294887|ref|YP_001185311.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32]
gi|145566577|gb|ABP77512.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32]
Length = 114
Score = 64.3 bits (155), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ R+ L + +++D S +I FGA L E ++G++ Y+IVG E D + G
Sbjct: 6 DSRVRYLVKRLEELKIVDYSPQQEGKIYFGAWFEL-ENDAGERVRYRIVGKDELDTKLGY 64
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
++I SP+ARALIGK++ D + V P G K + I ++
Sbjct: 65 ITIDSPMARALIGKQVDDEVVVQTPSGPKEWYINEI 100
>gi|166153977|ref|YP_001654095.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis 434/Bu]
gi|166154852|ref|YP_001653107.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|301335174|ref|ZP_07223418.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis L2tet1]
gi|165929965|emb|CAP03448.1| Transcription elongation factor [Chlamydia trachomatis 434/Bu]
gi|165930840|emb|CAP06402.1| Transcription elongation factor [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 715
Score = 64.3 bits (155), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + + L
Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFASERRARLQEEIRVLS 627
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I RA+++ + D + G V L E + GDK Y I+G +A+ ++S+ S +A
Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKVVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686
Query: 128 RALIGKELGDII 139
+ ++GK +G+ +
Sbjct: 687 QEMVGKAVGETV 698
>gi|15605367|ref|NP_220153.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis D/UW-3/CX]
gi|76789375|ref|YP_328461.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydia trachomatis A/HAR-13]
gi|237803065|ref|YP_002888259.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis B/Jali20/OT]
gi|255311460|ref|ZP_05354030.1| Transcription elongation factor [Chlamydia trachomatis 6276]
gi|255317761|ref|ZP_05359007.1| Transcription elongation factor [Chlamydia trachomatis 6276s]
gi|255349021|ref|ZP_05381028.1| Transcription elongation factor [Chlamydia trachomatis 70]
gi|255503560|ref|ZP_05381950.1| Transcription elongation factor [Chlamydia trachomatis 70s]
gi|7531128|sp|O84641|GREA_CHLTR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|3329084|gb|AAC68240.1| Transcription Elongation Factor G [Chlamydia trachomatis D/UW-3/CX]
gi|76167905|gb|AAX50913.1| GreA [Chlamydia trachomatis A/HAR-13]
gi|231274299|emb|CAX11094.1| Transcription elongation factor [Chlamydia trachomatis B/Jali20/OT]
gi|296436174|gb|ADH18348.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis G/9768]
gi|296437102|gb|ADH19272.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis G/11222]
gi|296438034|gb|ADH20195.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis G/11074]
gi|297140536|gb|ADH97294.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis G/9301]
gi|297748766|gb|ADI51312.1| GreA [Chlamydia trachomatis D-EC]
gi|297749646|gb|ADI52324.1| GreA [Chlamydia trachomatis D-LC]
Length = 715
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + + L
Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKIALERRARLQEEIHVLS 627
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I RA+++ + D + G V L E + GDK Y I+G +A+ ++S+ S +A
Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKVVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686
Query: 128 RALIGKELGDII 139
+ ++GK +G+ +
Sbjct: 687 QEMVGKAVGETV 698
>gi|289525679|emb|CBJ15160.1| Transcription elongation factor [Chlamydia trachomatis Sweden2]
Length = 715
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + + L
Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFASERRARLQEEIRVLS 627
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I RA+++ + D + G + L E + GDK Y I+G +A+ ++S+ S +A
Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKIVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686
Query: 128 RALIGKELGDII 139
+ ++GK +G+ +
Sbjct: 687 QEMVGKAVGETV 698
>gi|255507239|ref|ZP_05382878.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis D(s)2923]
gi|296435247|gb|ADH17425.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis E/150]
gi|296438966|gb|ADH21119.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis E/11023]
Length = 715
Score = 63.5 bits (153), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + + L
Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFASERRARLQEEIRVLS 627
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I RA+++ + D + G + L E + GDK Y I+G +A+ ++S+ S +A
Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKIVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686
Query: 128 RALIGKELGDII 139
+ ++GK +G+ +
Sbjct: 687 QEMVGKAVGETV 698
>gi|222106218|ref|YP_002547009.1| transcription elongation factor [Agrobacterium vitis S4]
gi|221737397|gb|ACM38293.1| transcription elongation factor [Agrobacterium vitis S4]
Length = 161
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 11/106 (10%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
Q A ++LN LE + A+V+ ++ D ++FG TV+ ++ G + Y+IVG
Sbjct: 65 QMAGPFRDLNY-----LEERLHTAQVMP-DPITADSVSFGTTVTFT-RDDGRVQTYRIVG 117
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ EAD ++G +S SP+ARALIGK +GD++S+ G++ EI +
Sbjct: 118 EDEADPKAGSISYVSPVARALIGKAVGDVVSL----GDQELEITAI 159
>gi|114049370|ref|YP_739920.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
gi|113890812|gb|ABI44863.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
Length = 113
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ R+ L + +++D S +I FGA L E +G++ Y+IVG E D + G
Sbjct: 5 DSRVRYLVKRLEELKIVDYSPQQEGKIYFGAWFEL-ENEAGERVRYRIVGKDELDTKLGY 63
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
++I SP+ARALIGK++ D + V P G K + I
Sbjct: 64 ITIDSPMARALIGKQVDDEVVVQTPSGPKEWYI 96
>gi|189423237|ref|YP_001950414.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ]
gi|189419496|gb|ACD93894.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ]
Length = 142
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 62/103 (60%), Gaps = 1/103 (0%)
Query: 56 QNLNEGR-MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
++L + R + ELE + +AE++D + + D + + VSL + +SG++ Y +V +AD
Sbjct: 30 RSLRDSRYIEELEQELLKAEIVDATGVPPDVVTMNSRVSLQDLDSGEQLQYTLVFPGDAD 89
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ G +SI +PI AL G GD IS + PGG + +I +VL+
Sbjct: 90 LNLGKISILAPIGTALFGYRTGDRISWSVPGGVRKLKIKKVLY 132
>gi|188584758|ref|YP_001916303.1| transcription elongation factor GreA [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349445|gb|ACB83715.1| transcription elongation factor GreA [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 164
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 75/134 (55%), Gaps = 4/134 (2%)
Query: 22 RQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81
R++E RI AIS +GD+SEN+EY AK Q EGR+ LE ++ A+++D
Sbjct: 34 RRKEVAERIKTAIS----FGDISENSEYDDAKNEQAFIEGRIITLEKMLRNAKIVDKDET 89
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
++ G TV L + ++ Y IVG E++ +S SP+ A+IGK++G+++ V
Sbjct: 90 DNKVVSIGNTVVLKDLEYDEEVEYTIVGSAESNPTDQKISNESPVGEAIIGKKVGEVVEV 149
Query: 142 NAPGGEKTYEILQV 155
P G YEI+ +
Sbjct: 150 KVPAGVIEYEIVDI 163
>gi|255534798|ref|YP_003095169.1| Transcription elongation factor GreB [Flavobacteriaceae bacterium
3519-10]
gi|255340994|gb|ACU07107.1| Transcription elongation factor GreB [Flavobacteriaceae bacterium
3519-10]
Length = 183
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 65/114 (57%), Gaps = 3/114 (2%)
Query: 42 DLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101
D S EY+ A +LN R+ L + A++ID + +S + FGATV+ N+
Sbjct: 71 DPSHEREYRIA--FNHLN-ARLQLLNGRMASAKIIDTARLSQGEVHFGATVTFKNLNNNL 127
Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
++ +Q+VG EA++ G ++ ++P+A+ALI ++G+ +++ +EIL +
Sbjct: 128 RQTFQLVGVDEANISKGKLAFTTPLAKALINSKVGEKVTLQLGDKTNIFEILSI 181
>gi|307069596|ref|YP_003878073.1| putative transcription elongation factor GreA [Candidatus Zinderia
insecticola CARI]
gi|306482856|gb|ADM89727.1| putative transcription elongation factor GreA [Candidatus Zinderia
insecticola CARI]
Length = 157
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 1/102 (0%)
Query: 37 ARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVID-ISTMSGDRIAFGATVSLV 95
AR+ GDLSEN++++ AKE + + E ++ LE I ++ID + + D+I F + L
Sbjct: 34 ARSNGDLSENSDFKIAKEKKYILEKKILILEKKINNFKIIDPLYIKNKDKIFFSCKLKLF 93
Query: 96 EKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+ K QIVGD E++ + +SI S +++ LI K++ D
Sbjct: 94 CYLNKKKIKLQIVGDCESNFKKNKISILSKLSKVLIKKKIND 135
>gi|311746267|ref|ZP_07720052.1| transcription elongation factor GreA [Algoriphagus sp. PR1]
gi|126576500|gb|EAZ80778.1| transcription elongation factor GreA [Algoriphagus sp. PR1]
Length = 166
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 58/101 (57%)
Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
N ++ L+ I A+++D+S + I FGA V+L S YQ+VG EAD+
Sbjct: 66 NFISAKIKLLDERIATAKIVDLSEQPKNEIRFGAKVTLKIGKSPKAMTYQLVGVDEADIS 125
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S SPIA LIGK++G+ +++ G++ +E++++ +
Sbjct: 126 KNKISFISPIAMILIGKKVGEKATLSLTKGDRVFEVMEIKY 166
>gi|261855687|ref|YP_003262970.1| transcription elongation factor GreB [Halothiobacillus neapolitanus
c2]
gi|261836156|gb|ACX95923.1| transcription elongation factor GreB [Halothiobacillus neapolitanus
c2]
Length = 175
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++++G ++ EL + ER +++A+SEA A GD SENAEY K + R+ L
Sbjct: 6 ISARGHARLLAELDQLWRVERRLVVQAVSEAAALGDRSENAEYIYGKRRLREIDRRIRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ +++ FGA ++L+ + + + +VG E D + L+SI SP+
Sbjct: 66 QKRLGDIKVVRQPPTDMNKVYFGARITLLYADDRE-QTVCLVGPDEIDPANQLISIDSPL 124
Query: 127 ARALIGKELGDIISVNAPGGEKT 149
A+A++GK L + + P T
Sbjct: 125 AKAVLGKALDAEVVLFLPSETST 147
>gi|307319133|ref|ZP_07598563.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
gi|306895240|gb|EFN25996.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
Length = 160
Score = 62.8 bits (151), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 13/115 (11%)
Query: 49 YQAAKELQNLNE------GRMAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSG 100
+ A ++++NE G + EL R + S D +AFG+TV+ ++ G
Sbjct: 50 FDATSTIEDVNERRRQSAGPLRELRYFAERVRTAQLVPDPASFDVVAFGSTVTF-SRDDG 108
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ Y+IVG+ EAD ++G +S SP+AR L+GK +GD+ SV G++ EIL +
Sbjct: 109 RVQKYRIVGEDEADPKAGSISYVSPVARVLMGKSVGDVASV----GDQELEILAI 159
>gi|16262532|ref|NP_435325.1| transcription elongation factor regulatory protein [Sinorhizobium
meliloti 1021]
gi|307300722|ref|ZP_07580497.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
gi|14523141|gb|AAK64737.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306904256|gb|EFN34841.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
Length = 160
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 13/115 (11%)
Query: 49 YQAAKELQNLNE------GRMAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSG 100
+ A ++++NE G + EL R + S D +AFG+TV+ ++ G
Sbjct: 50 FDATSTIEDVNERRRQSAGPLRELRYFAERVRTAQLVPDPASFDVVAFGSTVTF-SRDDG 108
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ Y+IVG+ EAD ++G +S SP+AR L+GK +GD+ SV G++ EIL +
Sbjct: 109 RVQKYRIVGEDEADPKAGSISYVSPVARVLMGKSVGDVASV----GDQELEILAI 159
>gi|300743808|ref|ZP_07072828.1| transcription elongation factor GreA [Rothia dentocariosa M567]
gi|311113051|ref|YP_003984273.1| transcription elongation factor GreA [Rothia dentocariosa ATCC
17931]
gi|300380169|gb|EFJ76732.1| transcription elongation factor GreA [Rothia dentocariosa M567]
gi|310944545|gb|ADP40839.1| transcription elongation factor GreA [Rothia dentocariosa ATCC
17931]
Length = 165
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 11/156 (7%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D++ QEL + R I+ I+ AR GDL EN Y AA++ Q NE R+ +L
Sbjct: 9 LTQDAYDRLTQELEYLSGPYRQEIVDRIAAARDEGDLRENGGYHAARDEQGKNEARINQL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE------ADVQSGLV 120
++++ A+V D + G +A G ++E + ++G +E A+ +
Sbjct: 69 KHLLENAQVGDAPSDDG-VVALGM---VIEAEVASRSMKFLLGSREIEETLPANSDLKVF 124
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
S SP+ A++G + GD ++ AP G E T +I+ V
Sbjct: 125 SEKSPMGAAILGAKEGDEVTYLAPNGKELTAKIVSV 160
>gi|197117702|ref|YP_002138129.1| RNA polymerase-binding protein Rnk [Geobacter bemidjiensis Bem]
gi|197087062|gb|ACH38333.1| RNA polymerase-binding protein Rnk [Geobacter bemidjiensis Bem]
Length = 143
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 59/106 (55%)
Query: 52 AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
A+ Q + + EL + RAEV+D + + D I + V L + +S ++ Y +V
Sbjct: 28 ARSTQTRDSKNLKELGEELVRAEVVDPAGIPPDVITMNSKVCLQDLDSEEELVYTLVFPN 87
Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
EAD+ SG +SI +P+ A+IG GD I+ PGG K ++ ++L+
Sbjct: 88 EADLASGKISILAPVGTAMIGFRTGDRITWPVPGGMKNLKVKKILY 133
>gi|152981797|ref|YP_001351733.1| transcription elongation factor GreB [Janthinobacterium sp.
Marseille]
gi|151281874|gb|ABR90284.1| transcription elongation factor GreB [Janthinobacterium sp.
Marseille]
Length = 175
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 60 EGRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ L+ + AEV+D S + GDRI FGA+V E +G+ IVG E D G
Sbjct: 74 EQRIHYLQTRVESAEVVDASVHADGDRIFFGASVDY-ENTAGETHTATIVGLDELDPAQG 132
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S SP+A++L+G E GD + + P G + +L V +
Sbjct: 133 RISWLSPLAQSLLGAEEGDTVLLQTPAGPEELHVLTVRY 171
>gi|241205105|ref|YP_002976201.1| transcription elongation factor regulatory protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240858995|gb|ACS56662.1| GreA/GreB family elongation factor [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 160
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 59/99 (59%), Gaps = 9/99 (9%)
Query: 49 YQAAKELQNLNEGR------MAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSG 100
Y AA ++++NE R + +L + R + S S D +AFG+TV+ ++ G
Sbjct: 50 YDAASPIEDVNERRRQAASPLRDLRYLTARLRTAQLMPSPTSIDTVAFGSTVTF-RRDDG 108
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
+ Y+IVG+ EAD ++G +S SP+AR L+GK +GD++
Sbjct: 109 RVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDMV 147
>gi|163841781|ref|YP_001626186.1| transcription elongation factor [Renibacterium salmoninarum ATCC
33209]
gi|162955257|gb|ABY24772.1| transcription elongation factor [Renibacterium salmoninarum ATCC
33209]
Length = 163
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 12/146 (8%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + F+++Q EL R ++K I +AR+ GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAFNRLQGELEQLSGPGRAEVVKKIEQARSEGDLKENGGYHAAKEEQGKIEARIRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121
++ A V + +G + +V K + +K + ++ GD + DV S
Sbjct: 71 TELLRDAHVGESPEDNG---VVEPGMLVVAKIANEKTTFLLGSREVAGDTDLDV----FS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147
SP+ A+ G + GD IS AP G+
Sbjct: 124 EKSPLGAAIQGHKAGDKISYTAPNGK 149
>gi|311898109|dbj|BAJ30517.1| putative transcription elongation factor GreA [Kitasatospora setae
KM-6054]
Length = 165
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 2/143 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T ++K++ E R I K I AR GDL ENA Y AAK+ Q E R+ +L
Sbjct: 11 LTQDHYNKLKAEFDHLTGPWRIEIAKKIEAAREEGDLKENAGYHAAKDEQGKTEARIRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ RA+V + SG +A G V + + + D + + + D + S SP
Sbjct: 71 SQLLERAKVGEAPADSG-VVAPGMLVKVAFDGDEDDTMEFLLASREVTDGDIDVYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ RA+IGK +G+ P G+K
Sbjct: 130 LGRAIIGKSVGEDAQYELPNGKK 152
>gi|296271052|ref|YP_003653684.1| transcription elongation factor GreA [Thermobispora bispora DSM
43833]
gi|296093839|gb|ADG89791.1| transcription elongation factor GreA [Thermobispora bispora DSM
43833]
Length = 167
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 77/151 (50%), Gaps = 2/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ E + R I K I AR GDL EN Y AAK+ Q E R+ L
Sbjct: 12 LTQEAYDRLKAEYEYLTGPARAEIAKKIEAAREEGDLRENGGYHAAKDEQGKLEARIYRL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I+ A+V G + G TV++ ++ + + +E+ V + S +SP+
Sbjct: 72 REILENAKVGQPPADDG-IVEPGMTVTVRFDGEDEEVTFLLASREESGVPIDVYSPNSPL 130
Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+A+ GK++G+ + P G +++ EIL+ +
Sbjct: 131 GKAITGKKVGERATFTLPNGKQRSVEILEAV 161
>gi|170782755|ref|YP_001711089.1| putative transcription elongation factor [Clavibacter michiganensis
subsp. sepedonicus]
gi|169157325|emb|CAQ02512.1| putative transcription elongation factor [Clavibacter michiganensis
subsp. sepedonicus]
Length = 162
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 70/145 (48%), Gaps = 12/145 (8%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + FD++ +EL + R I K I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 10 LTQEAFDRLSRELDTLSVQGREEIAKKIEIAREEGDLKENGGYHAAKEEQGKIEARIRQL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-----NYQIVGDQEADVQSGLVS 121
++ AEV D G +L+ +GD+ N +I GD + DV S
Sbjct: 70 TQLLRTAEVGDAPESHGVVEPGTVVTALI---AGDETKFLLGNREIAGDSDLDV----YS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
SP+ A+IG E+G + AP G
Sbjct: 123 EQSPLGAAIIGWEVGQKGAYTAPNG 147
>gi|260906828|ref|ZP_05915150.1| GreA/GreB family elongation factor [Brevibacterium linens BL2]
Length = 164
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 74/147 (50%), Gaps = 12/147 (8%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + FD++ QEL R I + I AR GDL EN Y AA+E Q E R+ +L
Sbjct: 12 LTQEAFDRLSQELEHLSGPGRAEIAEKIEAARDEGDLKENGGYHAAREEQGKQEARIRQL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121
E ++ A+V S G ++ G+ V+ K +G+ + +I GD + DV S
Sbjct: 72 ELLLQSAKV-GSSDSDGKTVSPGSVVTA--KVAGNDMRFLLGSREIAGDSDIDV----FS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGGEK 148
SP+ A++G +G S AP G++
Sbjct: 125 EKSPLGAAVLGVAVGGKTSYEAPNGKE 151
>gi|297566645|ref|YP_003685617.1| GreA/GreB family elongation factor [Meiothermus silvanus DSM 9946]
gi|296851094|gb|ADH64109.1| GreA/GreB family elongation factor [Meiothermus silvanus DSM 9946]
Length = 158
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 88/161 (54%), Gaps = 11/161 (6%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKA---ISEARAYGDLSENAEYQAAKELQN 57
M +I +T G++++++EL ++ER R+ A + E D +++ + AK +
Sbjct: 1 MAREIRLTRDGYERLKREL----EQERARLQDATRILQELMESSDDYDDSGLEDAKREKA 56
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQ 116
E R+ LE+ ++RA VI+ + G + GA V+L + G++ Q+V EA V
Sbjct: 57 RIEARIDSLEDTLSRAVVIEGAQEKG-VVTLGAIVTLKAREGKGEQMEVQVVAPAEASVL 115
Query: 117 SGLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ IS SP+ +AL+G++LG+ + + P G + +E++ V
Sbjct: 116 ENPMKISDESPMGKALLGRKLGETVHLETPKGHREFEVISV 156
>gi|237804986|ref|YP_002889140.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis B/TZ1A828/OT]
gi|231273286|emb|CAX10201.1| Transcription elongation factor [Chlamydia trachomatis
B/TZ1A828/OT]
Length = 715
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
TS F +++ +L+ +E K I +AR GDL EN+EY+ A E + + + L
Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARVLGDLRENSEYKIALERRARLQEEIHVLS 627
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I RA+++ + D + G V L E + GDK Y I+G +A+ ++S+ S +A
Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKVVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686
Query: 128 RALIGKELGDII 139
+ ++GK +G+ +
Sbjct: 687 QEMVGKAVGETV 698
>gi|281356514|ref|ZP_06243006.1| GreA/GreB family elongation factor [Victivallis vadensis ATCC
BAA-548]
gi|281317206|gb|EFB01228.1| GreA/GreB family elongation factor [Victivallis vadensis ATCC
BAA-548]
Length = 698
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 73/129 (56%), Gaps = 6/129 (4%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS-GDRI 86
P +A+ ARA+GD EN+E+ AAKE +N R ELE +TR + I + ++ D
Sbjct: 562 PENREALKVARAHGDFRENSEFDAAKERRNFLSRRRGELERELTRIQPISLKSVRVEDSA 621
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
G+ + L ++N G+K+ YQ++G + D + +S + + +A++ +++G S G
Sbjct: 622 VIGSEIELQDEN-GEKEVYQLLGAWDGDPERRFLSYRTRLGKAVLNRKVGSEFS----DG 676
Query: 147 EKTYEILQV 155
+ Y+++ V
Sbjct: 677 SRQYKLIAV 685
>gi|169628294|ref|YP_001701943.1| transcription elongation factor GreA [Mycobacterium abscessus ATCC
19977]
gi|238688921|sp|B1MKJ7|GREA_MYCA9 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|169240261|emb|CAM61289.1| Hypothetical transcription elongation factor GreA [Mycobacterium
abscessus]
Length = 164
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL + RP I I+E R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQESHDRLKAELD-QLIANRPVIAAEINERREEGDLRENGGYHAAREEQGQQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSISS 124
+ ++ A+V + T SG + + + GD + + I QE D + + S SS
Sbjct: 68 QELLNNAKVGEAPTQSGVALPGSVVKVYYDGDKGDTETFLIATRQEGVKDGKLEVYSPSS 127
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ ALI ++G+ S P G
Sbjct: 128 PLGGALIDAKVGETRSYTVPNG 149
>gi|293189385|ref|ZP_06608108.1| transcription elongation factor GreA [Actinomyces odontolyticus
F0309]
gi|292821848|gb|EFF80784.1| transcription elongation factor GreA [Actinomyces odontolyticus
F0309]
Length = 159
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D +T +D + EL+ R + +R I + I AR GDL EN Y AA+ Q++NE
Sbjct: 1 MADTQWLTQAQYDLLASELKERVEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118
R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+
Sbjct: 61 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQKF-LLGSRDAGGDLGIQ 116
Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146
+ S +P+ A+IG + GD +S AP G
Sbjct: 117 VFSAQAPLGAAVIGHKAGDKLSFEAPTG 144
>gi|315606055|ref|ZP_07881086.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
180 str. F0310]
gi|315312337|gb|EFU60423.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
180 str. F0310]
Length = 159
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D +T +D + EL+ R + +R I + I AR GDL EN Y AA+ Q++NE
Sbjct: 1 MADTQWLTQAQYDLLANELKERIEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118
R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+
Sbjct: 61 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQTF-LLGSRDAGGDLGIQ 116
Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146
+ S +P+ A+IG + GD +S AP G
Sbjct: 117 VFSAQAPLGAAVIGHKAGDKLSFEAPTG 144
>gi|326381820|ref|ZP_08203513.1| transcription elongation factor GreA [Gordonia neofelifaecis NRRL
B-59395]
gi|326199246|gb|EGD56427.1| transcription elongation factor GreA [Gordonia neofelifaecis NRRL
B-59395]
Length = 162
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTPESYDRLKGELD-SLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++++ +A+V + SG + + + DK+ + I +E + S SSP+
Sbjct: 68 QDLLNKAKVGEAPKQSGVALPGSVVTVYYDGDESDKETFLIATREEGSGDIEIYSPSSPL 127
Query: 127 ARALIGKELGDIISVNAPGG 146
ALI ++G+ + P G
Sbjct: 128 GAALIDAKVGESRTYTVPSG 147
>gi|154507712|ref|ZP_02043354.1| hypothetical protein ACTODO_00193 [Actinomyces odontolyticus ATCC
17982]
gi|153797346|gb|EDN79766.1| hypothetical protein ACTODO_00193 [Actinomyces odontolyticus ATCC
17982]
Length = 178
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 6/148 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D +T +D + EL+ R + +R I + I AR GDL EN Y AA+ Q++NE
Sbjct: 20 MADTQWLTQAQYDLLASELKERVEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE 79
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118
R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+
Sbjct: 80 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQKF-LLGSRDAGGDLGIQ 135
Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146
+ S +P+ A+IG + GD +S AP G
Sbjct: 136 VFSAQAPLGAAVIGHKAGDKLSFEAPTG 163
>gi|325962607|ref|YP_004240513.1| transcription elongation factor GreA [Arthrobacter
phenanthrenivorans Sphe3]
gi|323468694|gb|ADX72379.1| transcription elongation factor GreA [Arthrobacter
phenanthrenivorans Sphe3]
Length = 164
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 12/146 (8%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + FD+++ EL R I++ I +AR GDL EN Y AAKE Q E R+ +L
Sbjct: 12 LTQEAFDRLKAELDHLSGPGRAEIVQKIDQARQEGDLKENGGYHAAKEEQGKIEARIRQL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121
++ A V + G + G V V + +GD++ + +I GD + DV S
Sbjct: 72 TVLLRDAHVGEAPADDG-IVEPGMIV--VARIAGDEETFLLGSREIAGDSDLDV----FS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147
SP+ A++G + G+ +S AP G+
Sbjct: 125 EKSPLGAAILGHKEGESLSYTAPNGK 150
>gi|220922797|ref|YP_002498099.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS
2060]
gi|219947404|gb|ACL57796.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS
2060]
Length = 153
Score = 61.6 bits (148), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
I GD + FG+TV+ VE+ G + Y IVG+ EAD G ++ +P+ARAL GK+ GD
Sbjct: 80 IEPTPGDTVHFGSTVT-VEREDGTRLTYHIVGEDEADPAKGSIAYVAPLARALTGKQAGD 138
Query: 138 IISVNAPGGEKTYEILQV 155
+++V + EI++V
Sbjct: 139 VVTV----ADHEVEIIEV 152
>gi|84497875|ref|ZP_00996672.1| putative transcription elongation factor [Janibacter sp. HTCC2649]
gi|84381375|gb|EAP97258.1| putative transcription elongation factor [Janibacter sp. HTCC2649]
Length = 162
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + FD+++ EL R I+ I AR GDL EN Y AA+E Q NE R+ +L
Sbjct: 11 LTQEAFDRLKAELEELSGPGRADIVAKIEAAREEGDLKENGGYHAAREEQGKNEARIRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ A I T D I + VE GD++ + + + AD + S SPI
Sbjct: 71 TQLLENA--IIGETPPDDGIVEPGMLVTVEI-FGDEETFLLGSREIADGSLQVYSEQSPI 127
Query: 127 ARALIGKELGDIISVNAPGGEK 148
A+ GK+ GD ++ AP G++
Sbjct: 128 GSAVNGKKAGDSVTYEAPNGKQ 149
>gi|209549738|ref|YP_002281655.1| transcription elongation factor regulatory protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209535494|gb|ACI55429.1| GreA/GreB family elongation factor [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 160
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 9/99 (9%)
Query: 49 YQAAKELQNLNE------GRMAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSG 100
Y AA ++++NE G + +L + R + S D +AFG+TV+ ++ G
Sbjct: 50 YDAASTVEDVNERRRQAAGPLRDLRYLAARLRTAQLMADPASTDTVAFGSTVTF-SRDDG 108
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
+ Y+IVG+ EAD ++G +S SP+AR L+GK +GD++
Sbjct: 109 RVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDVV 147
>gi|15807365|ref|NP_296096.1| transcription elongation factor [Deinococcus radiodurans R1]
gi|6460189|gb|AAF11920.1|AE002068_3 transcription elongation factor [Deinococcus radiodurans R1]
Length = 183
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 11/162 (6%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQ--QEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M +P+T +G ++Q L Q +EE R+++ EA + +E+ + AA+E
Sbjct: 24 MTQPLPLTPEGLSRLQAALEREQARREEARRVVQEQMEA----NENESLDLAAAQETLGA 79
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ ELE+ + RA V+ + R A G+ V+L+ G + +V EA G
Sbjct: 80 VEARIEELEDQLARAVVLAPGAGNDGRAAVGSRVTLLNIGLGRELPLHLVSAAEAAAGPG 139
Query: 119 -----LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
LVS SP+ RAL+G+ G+ +V+ + Y +L V
Sbjct: 140 TSGVALVSTESPVGRALLGRRAGEEFTVDLGRTQAQYRVLMV 181
>gi|297202039|ref|ZP_06919436.1| transcription elongation factor greA [Streptomyces sviceus ATCC
29083]
gi|197714326|gb|EDY58360.1| transcription elongation factor greA [Streptomyces sviceus ATCC
29083]
Length = 166
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 1/143 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + + K+++EL + R + I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYTKLKEELAYLSGPAREEVTAKIAAAREEGDLRENGGYHAAKEEQGKQELRIRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ +A+V + T + +A G V++ + + D + + + A S SP
Sbjct: 71 TQLLEKAKVGEAPTSTDGAVAPGMVVTIAFDGDESDTMTFLLASREYASADVETYSPQSP 130
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ +IG ++G+ P G+K
Sbjct: 131 LGSGVIGHKVGEDAEYELPNGKK 153
>gi|271969724|ref|YP_003343920.1| GreA/GreB family elongation factor [Streptosporangium roseum DSM
43021]
gi|270512899|gb|ACZ91177.1| GreA/GreB family elongation factor [Streptosporangium roseum DSM
43021]
Length = 166
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 2/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ E + R I K I AR GDL EN Y AAK+ Q E R+ L
Sbjct: 12 LTQEAYDRLKAEFEYLSGPGRVDIAKKIEAAREEGDLKENGGYHAAKDEQGKMEARIFHL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
II A V + G + G TV++ + ++ + + +E+ + S SP+
Sbjct: 72 RQIIDSARVGEAPRTEG-VVGPGMTVTVRFEGDDEEVAFLLASREESGAPIDVYSPKSPL 130
Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156
A+ GK++G+ + P G T EIL+ +
Sbjct: 131 GSAINGKKIGEKATYTMPNGRSNTVEILEAV 161
>gi|289610114|emb|CBI60320.1| unnamed protein product [Sordaria macrospora]
Length = 108
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 1/71 (1%)
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
R FGATV++ +++ + + ++VGD EAD G + +SP+ARAL G +GD+ +V P
Sbjct: 36 RAWFGATVTIADEDD-NHRTLELVGDDEADAGKGRIGWNSPMARALRGSAVGDVRTVALP 94
Query: 145 GGEKTYEILQV 155
G K YE++ +
Sbjct: 95 AGAKEYEVMAI 105
>gi|78223803|ref|YP_385550.1| GreA/GreB family elongation factor [Geobacter metallireducens
GS-15]
gi|78195058|gb|ABB32825.1| GreA/GreB family elongation factor [Geobacter metallireducens
GS-15]
Length = 142
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 57/96 (59%)
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ELE+ + RAEV++ + D I + V L + +SG++ +Y +V +A ++ +S
Sbjct: 37 HLRELEDELLRAEVVEPQDIPADVITMNSRVCLKDLDSGEELHYTLVFPGDARLEDNRIS 96
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I +P+ AL+G +GD I+ PGG + ++ ++L+
Sbjct: 97 ILAPVGTALLGYRVGDTITWKVPGGTRRLKVKKILY 132
>gi|148273428|ref|YP_001222989.1| transcription elongation factor GreA [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147831358|emb|CAN02314.1| transcription elongation factor GreA [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 162
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 70/145 (48%), Gaps = 12/145 (8%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + FD++ +EL + R I K I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 10 LTQEAFDRLSRELDTLSVQGREEIAKKIEIAREEGDLKENGGYHAAKEEQGKIEARIRQL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-----NYQIVGDQEADVQSGLVS 121
++ AE+ D G +L+ +GD+ N +I GD + DV S
Sbjct: 70 TQLLRTAELGDAPESHGVVEPGTVVTALI---AGDETKFLLGNREIAGDSDLDV----YS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
SP+ A+IG E+G + AP G
Sbjct: 123 EQSPLGAAIIGWEVGQKGAYTAPNG 147
>gi|253701567|ref|YP_003022756.1| GreA/GreB family elongation factor [Geobacter sp. M21]
gi|251776417|gb|ACT18998.1| GreA/GreB family elongation factor [Geobacter sp. M21]
Length = 143
Score = 60.8 bits (146), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 59/108 (54%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
+ + Q + + EL + RAEV+D + + D I + V L + +S ++ Y +V
Sbjct: 26 EKVRSTQTRDSKNLQELGEELVRAEVVDPAGIPPDVITMNSKVCLQDLDSKEELVYTLVF 85
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
E+D+ SG +SI +P+ A+IG GD I+ PGG K ++ +VL+
Sbjct: 86 PNESDLASGKISILAPVGTAMIGFRTGDSITWPVPGGMKNLKVKKVLY 133
>gi|28875484|gb|AAO59965.1| GreA [uncultured bacterium]
Length = 597
Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
EL L E +A++ ++ A VI +++ D + FGA V +VE + G + +Q+VG+ EA
Sbjct: 495 ELATL-ERELAQVSAVLQGAIVIRLASPPRDEVRFGAEV-VVEDDRGSRSRFQLVGENEA 552
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ GLV+ SP+ RAL G LG + P G Y + ++
Sbjct: 553 APERGLVNWFSPLGRALAGARLGQRVEWTTPAGRGAYVVREI 594
>gi|312194554|ref|YP_004014615.1| GreA/GreB family elongation factor [Frankia sp. EuI1c]
gi|311225890|gb|ADP78745.1| GreA/GreB family elongation factor [Frankia sp. EuI1c]
Length = 160
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 10/160 (6%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T + +D+++ EL + R + I AR GDL EN Y AAKE Q E
Sbjct: 1 MTQQTWLTQEAYDRLRSELDYLTTTGRTELANKIEAAREEGDLKENGGYHAAKEEQGKQE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ-IVG---DQEADVQ 116
R+ +L +++ A+V + + +G +A TV V + GDK+ + ++G D A +
Sbjct: 61 ARIRQLNDLLRDAKVGEAAASTG--VAGPGTVVEV-RFQGDKETEKFLIGSREDHSAPID 117
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
+ S +SP+ A+ G + GD ++ P G + EI+ V
Sbjct: 118 --VFSPASPLGGAVTGHKAGDKVTYTLPNGRNASVEIVSV 155
>gi|253996329|ref|YP_003048393.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8]
gi|253983008|gb|ACT47866.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8]
Length = 168
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 30/144 (20%)
Query: 43 LSENAEY---QAAKELQNLNEGRMAELENIITRAE------------------------- 74
+SE+ Y A ELQ L E +AEL + A+
Sbjct: 24 ISEHPNYVTPSGALELQTLEESLVAELNRLKLTADDTFAKDKVAEIERDLRYVRARLDSA 83
Query: 75 -VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
++D + S + + FGAT+ VE +G + + IVG+ EAD VS SP+A++L+G+
Sbjct: 84 ILVDPTKQSHETVLFGATIE-VEDGAGAQHTFHIVGEDEADASINKVSWVSPLAKSLLGQ 142
Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157
++GD ++ P G EIL + +
Sbjct: 143 KVGDTVTWQRPAGNINLEILDIHY 166
>gi|91976219|ref|YP_568878.1| transcription elongation factor regulatory protein
[Rhodopseudomonas palustris BisB5]
gi|91682675|gb|ABE38977.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
BisB5]
Length = 160
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 66/115 (57%), Gaps = 15/115 (13%)
Query: 50 QAAKELQNLNEGRMAE---------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
+AAK ++++NE R E + A++I T + D +AFG+TV+ ++ G
Sbjct: 51 EAAKAIEDVNERRRQEAIPSRDARYFATRVRTAQLIADPT-TADVVAFGSTVTF-KRADG 108
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ Y+IVG+ EAD + G +S SP+AR L+GK +GD+ A GE+ EI+ +
Sbjct: 109 RVQTYRIVGEDEADPKVGSISFVSPVARLLMGKAVGDV----AGAGEQELEIIAI 159
>gi|145641638|ref|ZP_01797215.1| transcription elongation factor GreA [Haemophilus influenzae
R3021]
gi|145273685|gb|EDK13554.1| transcription elongation factor GreA [Haemophilus influenzae
22.4-21]
Length = 58
Score = 60.8 bits (146), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 42/57 (73%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
+ +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q
Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGF 57
>gi|256824590|ref|YP_003148550.1| transcription elongation factor [Kytococcus sedentarius DSM 20547]
gi|256687983|gb|ACV05785.1| transcription elongation factor [Kytococcus sedentarius DSM 20547]
Length = 164
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T ++++ EL + E R I I +AR+ GDL EN Y AAKE Q EGR+A+L
Sbjct: 11 LTRAAYERLNAELEQLKGEGRREIAHRIEDARSEGDLKENGGYHAAKEEQGKMEGRIAQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLV-SISS 124
++ AEV + + G V++ + G+ + + + G++E AD V S S
Sbjct: 71 TTLLQNAEVGEEPPADDGVVEPGMIVTI--EMFGETETF-LFGNREIADGDDMEVYSERS 127
Query: 125 PIARALIGKELGDIISVNAPGGEK 148
P+ +A+ G+ G+ I AP G+K
Sbjct: 128 PLGKAIDGRNQGETIGYEAPNGKK 151
>gi|295395791|ref|ZP_06805979.1| transcription elongation factor GreA [Brevibacterium mcbrellneri
ATCC 49030]
gi|294971326|gb|EFG47213.1| transcription elongation factor GreA [Brevibacterium mcbrellneri
ATCC 49030]
Length = 163
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 11/150 (7%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
D+ +T + F+++ +EL R I + I AR GDL EN Y AA+E Q E
Sbjct: 7 ADQTWLTPQAFERLTKELEHLSGPGRTEIAERIESARDEGDLKENGGYHAAREEQGKLEA 66
Query: 62 RMAELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ ELE+++ A ++S GD + G V+L G +K ++G +E +
Sbjct: 67 RIRELEHLLQNA---NVSEPDGDESTVTPGKLVTL---KMGRRKIEFLLGSREIISEEDH 120
Query: 120 VSI---SSPIARALIGKELGDIISVNAPGG 146
V + SP+ A+ GK++GD + AP G
Sbjct: 121 VDVFSEKSPLGAAVNGKKVGDKVEYEAPNG 150
>gi|172040278|ref|YP_001799992.1| transcription elongation factor GreA [Corynebacterium urealyticum
DSM 7109]
gi|171851582|emb|CAQ04558.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
Length = 174
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 7/145 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++ EL + +E RP + I+E R GDL EN Y AA+E Q E R+A L
Sbjct: 9 LTQESYDRLNAEL-FALKENRPVLAAEINERREEGDLKENGGYHAAREQQGQEEARIAYL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV--EKNSGDKKNYQI--VGDQEADVQSGLVSI 122
E ++ A + + SG +A TV V + + DK+ + I G + ++ + S
Sbjct: 68 EELLDNATIGEAPQESG--VALVGTVVHVYYDDDEEDKETFLIGTRGLESSNPELETYST 125
Query: 123 SSPIARALIGKELGDIISVNAPGGE 147
+P+ AL+G ++G+ P G+
Sbjct: 126 DAPLGAALVGAKVGETREYETPTGD 150
>gi|297559077|ref|YP_003678051.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296843525|gb|ADH65545.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 166
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ EL R I + I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 12 LTQEAYDRLKSELDHLSGSGRIEIAEKIEAAREEGDLKENGGYHAAKEEQGKMEARILQL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I+ A V + G + G TV++ D+ + + +E+ + S SP+
Sbjct: 72 TEILRTARVGEAPHTEG-VVGPGMTVTVKFDGDDDEVTFLLASREESGSPIDVYSPRSPL 130
Query: 127 ARALIGKELGDIISVNAPGGE 147
A+ GK +G+ +S P G+
Sbjct: 131 GSAINGKRVGENVSYTLPNGK 151
>gi|283458641|ref|YP_003363276.1| transcription elongation factor [Rothia mucilaginosa DY-18]
gi|283134691|dbj|BAI65456.1| transcription elongation factor [Rothia mucilaginosa DY-18]
Length = 189
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 75/148 (50%), Gaps = 10/148 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T FD++ QEL + R I+ I++AR GDL EN Y AA++ Q NE R+ +L
Sbjct: 33 LTQDAFDRLTQELEYLSGPYRQEIVDRIAQARDEGDLRENGGYHAARDEQAKNEARIKQL 92
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE------ADVQSGLV 120
++++ A + D T + D + V +E + ++G +E A +
Sbjct: 93 KHLLETAHIGD--TPADDGVVEHGMV--IEAEVAGRTLKFLLGSREIEDTLPAGSDLKVF 148
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK 148
S SP+ A++G + GD ++ AP G++
Sbjct: 149 SEKSPLGAAIMGAKQGDEVTYTAPNGKE 176
>gi|116252606|ref|YP_768444.1| transcription elongation factor regulatory protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115257254|emb|CAK08349.1| putative transcription elongation factor [Rhizobium leguminosarum
bv. viciae 3841]
Length = 160
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 62/100 (62%), Gaps = 11/100 (11%)
Query: 49 YQAAKELQNLNEGR------MAELENIITR---AEVIDISTMSGDRIAFGATVSLVEKNS 99
Y AA ++++NE R + +L + R A+++ +T S D +AFG+TV+ ++
Sbjct: 50 YDAASPIEDVNERRRQAANPLRDLRYLAARLRTAQLMPAAT-SIDTVAFGSTVTF-RRDD 107
Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
G + Y+IVG+ EAD ++G +S SP+AR L+GK +GD +
Sbjct: 108 GRVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDAV 147
>gi|84387295|ref|ZP_00990316.1| transcription elongation factor GreA [Vibrio splendidus 12B01]
gi|84377942|gb|EAP94804.1| transcription elongation factor GreA [Vibrio splendidus 12B01]
Length = 64
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 41/54 (75%)
Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
YQIV + EA++++G +S+ SPIAR LIGK GD + ++ PGG+K +EI +V +I
Sbjct: 11 YQIVSEDEAEIKTGRISVKSPIARGLIGKMEGDEVIISTPGGDKDFEIDKVEYI 64
>gi|220912010|ref|YP_002487319.1| transcription elongation factor GreA [Arthrobacter chlorophenolicus
A6]
gi|219858888|gb|ACL39230.1| transcription elongation factor GreA [Arthrobacter chlorophenolicus
A6]
Length = 164
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 12/146 (8%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + FD+++ EL R I++ I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 12 LTQEAFDRLKAELDQLSGPGRAEIVQKIDAARQEGDLKENGGYHAAKEEQGKIEARIRQL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121
++ A V + + + D I + +V + +GD++ + +I GD + DV S
Sbjct: 72 TVLLRDAHVGE--SPADDGIVEPGMI-VVARIAGDEETFLLGSREIAGDSDLDV----FS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147
SP+ A++G + G+ +S AP G+
Sbjct: 125 EKSPLGSAILGHKEGETLSYVAPNGK 150
>gi|148252734|ref|YP_001237319.1| transcription elongation factor regulatory protein [Bradyrhizobium
sp. BTAi1]
gi|146404907|gb|ABQ33413.1| GreA/GreB family elongation factor [Bradyrhizobium sp. BTAi1]
Length = 160
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
S + IAFG+TV+ E+ G + Y+IVG+ EAD + G++S SP+AR L+GK +GD++ +
Sbjct: 91 STETIAFGSTVTF-ERGDGRVQTYRIVGEDEADPKRGMISYVSPVARLLMGKSVGDVVEM 149
Query: 142 N 142
+
Sbjct: 150 S 150
>gi|227534584|ref|ZP_03964633.1| transcription elongation factor [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|227187833|gb|EEI67900.1| transcription elongation factor [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
Length = 128
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 72/131 (54%), Gaps = 5/131 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
MV +T G ++QE+ + RP IK +++A A GD SENAEY AAK EL+ L
Sbjct: 1 MVTYHEITPTGLANLKQEVE-DLKTIRPAKIKNLADAAALGDRSENAEYSAAKRELRQL- 58
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ L+ +I A+V + D G ++L + D+ Y++VG EA +
Sbjct: 59 EGRLRYLDKLIRYAKV--THPAASDIADIGNRITLKFDDDEDQATYELVGPAEAGMGQDK 116
Query: 120 VSISSPIARAL 130
++I+SP+ A+
Sbjct: 117 LAINSPLGAAI 127
>gi|226355352|ref|YP_002785092.1| transcription elongation factor [Deinococcus deserti VCD115]
gi|226317342|gb|ACO45338.1| putative transcription elongation factor [Deinococcus deserti
VCD115]
Length = 162
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 79/152 (51%), Gaps = 9/152 (5%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQE--ERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
+ ++ +T +GF+++Q+ L QQ E RI++ E A +E+ + AK +
Sbjct: 5 IRQVRLTREGFERLQKTLEQEQQRLAEATRILQEQMETSAD---TEDTGLEDAKREKMAI 61
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG- 118
E R+ ELE+ + RA +I+ G R+ GA V+L + + Q+V EA V G
Sbjct: 62 EARLDELEDTLARATIIEDHENDG-RVELGAIVNLSNETTKKDMKVQVVSAPEAAVLGGS 120
Query: 119 --LVSISSPIARALIGKELGDIISVNAPGGEK 148
+S SP+ + L+G++ GD VN GG++
Sbjct: 121 LPRISEDSPVGKELMGRKTGDSFVVNLEGGKQ 152
>gi|188583529|ref|YP_001926974.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001]
gi|179347027|gb|ACB82439.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001]
Length = 154
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+ GD + FGATV+++ ++ ++ ++IVG+ EAD +G +S +P+ARAL GK +GD
Sbjct: 81 VEAFEGDTVRFGATVTVLREDD-TRQTFRIVGEDEADPATGSISYVAPLARALTGKGVGD 139
Query: 138 IISVNAPGGEKTYEILQV 155
++VN + +EI ++
Sbjct: 140 TVTVN----DHEFEIAEI 153
>gi|227820950|ref|YP_002824920.1| transcription elongation factor regulatory protein [Sinorhizobium
fredii NGR234]
gi|227339949|gb|ACP24167.1| putative transcription elongation factor [Sinorhizobium fredii
NGR234]
Length = 160
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 67/115 (58%), Gaps = 13/115 (11%)
Query: 49 YQAAKELQNLNEGR---MAELENIITRAEVIDISTM-----SGDRIAFGATVSLVEKNSG 100
Y AA +++ NE R L ++ AE + + + SG+ +AFG+TV+ ++ G
Sbjct: 50 YSAASAIEDANERRRQAAGPLRDLRYFAERVRTAQLVPDPTSGETVAFGSTVTF-SRDDG 108
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ Y+IVG+ EAD + G +S SP+AR L+GK G+++S+ G++ EI+ +
Sbjct: 109 RVQTYRIVGEDEADPKLGSISYVSPVARILLGKANGEVVSI----GDQELEIVAI 159
>gi|134097505|ref|YP_001103166.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL
2338]
gi|291009354|ref|ZP_06567327.1| transcription elongation factor GreA [Saccharopolyspora erythraea
NRRL 2338]
gi|166200697|sp|A4F866|GREA_SACEN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|133910128|emb|CAM00241.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL
2338]
Length = 162
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T FD+++ EL RP I I+EAR GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQDAFDRLKSELD-ELVGNRPVIAAKINEAREEGDLKENGGYHAAREEQGHLESRIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124
+ ++ A+V D+ T +G +A +V V + D+ ++ +E L S SS
Sbjct: 68 QELLRTAKVGDVPTEAG--VAKPGSVLTVRYDDEDETEKFLLATREEGAHGDLEVYSPSS 125
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ +AL+ + G+ P G
Sbjct: 126 PLGQALLDAKEGETREYELPNG 147
>gi|256374856|ref|YP_003098516.1| transcription elongation factor GreA [Actinosynnema mirum DSM
43827]
gi|255919159|gb|ACU34670.1| transcription elongation factor GreA [Actinosynnema mirum DSM
43827]
Length = 162
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ EL E RP I I+ R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQEAYDRLKAELD-EMIENRPVIAAEINARREEGDLRENGGYHAAREEQGKQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--LVSISS 124
+ ++ A+V + T++G IA V V D+ ++ +E G + S SS
Sbjct: 68 QELLRVAKVGEAPTVTG--IAAPGMVLTVRYEGDDETEEFLLATREEGAHGGTEVYSPSS 125
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ +AL+G + G+ P G
Sbjct: 126 PLGKALLGAKEGETREYELPNG 147
>gi|316932887|ref|YP_004107869.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
DX-1]
gi|315600601|gb|ADU43136.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
DX-1]
Length = 174
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
S D IAFG+TV+ + G + Y+IVG+ EAD + G +S SP+AR+L+GK +GD++
Sbjct: 105 STDEIAFGSTVTF-RRADGRVQTYRIVGEDEADPKQGTISFVSPVARSLMGKSVGDVVGK 163
Query: 142 NA 143
A
Sbjct: 164 GA 165
>gi|158312680|ref|YP_001505188.1| transcription elongation factor GreA [Frankia sp. EAN1pec]
gi|158108085|gb|ABW10282.1| transcription elongation factor GreA [Frankia sp. EAN1pec]
Length = 161
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T + +++++ EL + R I I AR GDL EN Y AAKE Q E
Sbjct: 1 MTQQTWLTQEAYNRLRSELDYLTGTWRTEIAAKIEAAREEGDLKENGGYHAAKEEQGKQE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +L +++ A V S+ + G V + + + + I ++ +
Sbjct: 61 ARIRQLMDLLRDARVGQASSAASGEAGPGTIVEIRFPGEKETERFLIGSREDHSASIEVF 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
S +SP+ A+ G + GD + P G T EI+ V
Sbjct: 121 SPASPLGGAVTGHKAGDTVKYTLPNGRPATVEIVSV 156
>gi|120435907|ref|YP_861593.1| GreA-like transcription elongation factor [Gramella forsetii
KT0803]
gi|117578057|emb|CAL66526.1| GreA-like transcription elongation factor [Gramella forsetii
KT0803]
Length = 166
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 15/133 (11%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G +++QEL+ + E RA+ + + E + A Q+L +G++ L
Sbjct: 31 VTPNGLAELKQELKDLEYE------------RAHVEAENDTEKRRA---QSLIDGKINLL 75
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A ++D D I FGA V L + SG + +QIVG EAD++ ++ +PI
Sbjct: 76 SERLQTARLLDSKDQPKDEIRFGARVKLTNETSGQLQEFQIVGVDEADIKKKKIAFVAPI 135
Query: 127 ARALIGKELGDII 139
A+A+ G+++G+ I
Sbjct: 136 AKAVTGRKVGEEI 148
>gi|317124131|ref|YP_004098243.1| transcription elongation factor GreA [Intrasporangium calvum DSM
43043]
gi|315588219|gb|ADU47516.1| transcription elongation factor GreA [Intrasporangium calvum DSM
43043]
Length = 160
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 4/146 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ EL R I + I EAR GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTKEAYDRLKAELDQLTGVGRIEIARKIEEAREEGDLKENGGYHAAREEQGKMEARIRQL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++++ A V + T D + V VE G+++ + + + AD + S SP+
Sbjct: 69 QDLLHNAVVGE--TPPDDGVVEPGMVVTVEL-FGEQEKFLLGSREIADDDLQVFSEKSPM 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
A+ GK +GD S AP G KT E+
Sbjct: 126 GAAVNGKSVGDTTSYEAPTG-KTIEV 150
>gi|262201591|ref|YP_003272799.1| transcription elongation factor GreA [Gordonia bronchialis DSM
43247]
gi|262084938|gb|ACY20906.1| transcription elongation factor GreA [Gordonia bronchialis DSM
43247]
Length = 164
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP I I+E R GDL EN Y AA+E Q E R+ +L+ ++ A+V + T SG +
Sbjct: 28 RPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQLQELLNNAKVGEAPTQSG--V 85
Query: 87 AFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVSISSPIARALIGKELGDIISV 141
A +V V + GD+K+ + ++ +E Q G S SSP+ ALI ++G+
Sbjct: 86 ALPGSVVTVYYD-GDEKDTETFLIATREEGAQGGDLETYSPSSPLGSALIDAKVGETREY 144
Query: 142 NAPGG 146
+ P G
Sbjct: 145 SVPSG 149
>gi|170740603|ref|YP_001769258.1| GreA/GreB family elongation factor [Methylobacterium sp. 4-46]
gi|168194877|gb|ACA16824.1| GreA/GreB family elongation factor [Methylobacterium sp. 4-46]
Length = 153
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 48/78 (61%), Gaps = 5/78 (6%)
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
I GD + FG+TV +VE+ G ++ Y++VG+ EAD G ++ +P+ARAL GK GD
Sbjct: 80 IEPTPGDTVHFGSTV-VVEREDGSRQTYRVVGEDEADPARGSIAYVAPLARALTGKLAGD 138
Query: 138 IISVNAPGGEKTYEILQV 155
++ V + EI++V
Sbjct: 139 VVRV----ADHDVEIIEV 152
>gi|171912645|ref|ZP_02928115.1| transcript cleavage factor/unknown domain fusion protein
[Verrucomicrobium spinosum DSM 4136]
Length = 627
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P+ K I AR YGDL EN EY++A++ Q + + E + RA D +S + +
Sbjct: 485 PQNKKDIQIAREYGDLRENFEYKSARQHQAVLLRMQSTYERELRRARGTDFVGVSTETVG 544
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
G V L + +G + I+G + D ++S S +A+ALIGK +GD
Sbjct: 545 IGTIVDLQDVGTGKTETQTILGAWDGDPDQSILSYLSEMAKALIGKRVGD 594
>gi|134093324|ref|YP_001098399.1| putative transcription elongation factor GreA/GreB [Herminiimonas
arsenicoxydans]
gi|133737227|emb|CAL60270.1| putative transcription elongation factor GreB [Herminiimonas
arsenicoxydans]
Length = 193
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 82/152 (53%), Gaps = 8/152 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +Q EL+ E + ++ E SE + + +E+ E R+ L
Sbjct: 29 ITLAGYRHLQSELQRLMNEAQSAAVR--EENPDNATFSEMSPERTVREI----EQRIHYL 82
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ + AE++D +G+ +I FGA V+ + SG++++ IVG E D +G +S SP
Sbjct: 83 QARLEMAEIVDPGVHAGEEQIFFGANVTY-QHESGEQQSVTIVGLDELDPANGRISWLSP 141
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A++L+G GD +++ +P G++ ++L V +
Sbjct: 142 VAQSLLGAYAGDEVTLESPAGKEVLKVLAVHY 173
>gi|229491945|ref|ZP_04385765.1| transcription elongation factor GreA [Rhodococcus erythropolis
SK121]
gi|229321158|gb|EEN86959.1| transcription elongation factor GreA [Rhodococcus erythropolis
SK121]
Length = 167
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL + RP I I+E R GDL EN Y AA+E Q E R+ +L
Sbjct: 12 LTQESHDRLKNELD-QLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSISS 124
+ ++ A+V + T SG + + + D + + I +E D + + S +S
Sbjct: 71 QELLNSAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDAKLEVYSPNS 130
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ AL+ ++GD N P G
Sbjct: 131 PLGGALLEAKVGDTREYNLPNG 152
>gi|226307748|ref|YP_002767708.1| transcription elongation factor GreA [Rhodococcus erythropolis PR4]
gi|259647649|sp|C1A2Y4|GREA_RHOE4 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|226186865|dbj|BAH34969.1| transcription elongation factor GreA [Rhodococcus erythropolis PR4]
Length = 164
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL + RP I I+E R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQESHDRLKNELD-QLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSISS 124
+ ++ A+V + T SG + + + D + + I +E D + + S +S
Sbjct: 68 QELLNSAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDAKLEVYSPNS 127
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ AL+ ++GD N P G
Sbjct: 128 PLGGALLEAKVGDTREYNLPNG 149
>gi|218510131|ref|ZP_03508009.1| transcription elongation factor regulatory protein [Rhizobium etli
Brasil 5]
Length = 160
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 49 YQAAKELQNLNEGR------MAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSG 100
Y AA ++++NE R + +L + R + + S D +AFG+TV+ ++ G
Sbjct: 50 YDAANTIEDVNERRRHAANPLRDLRYLAARLRTARVMPNPTSADVVAFGSTVTF-RRDDG 108
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
+ Y+IVG+ EAD ++G +S SP+AR L+GK GD +
Sbjct: 109 RVQTYRIVGEDEADPKAGSISHVSPVARLLMGKAAGDAV 147
>gi|29839773|ref|NP_828879.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila caviae GPIC]
gi|29834120|gb|AAP04757.1| transcription elongation factor GreA [Chlamydophila caviae GPIC]
Length = 717
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 7/157 (4%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + T + F K++ +L+ +E K I +AR GDL EN+EY+ A E + +
Sbjct: 564 DILWTTPESFTKMKNKLQSLSGKEMVDNAKEIEDARVLGDLRENSEYKFALEKRARLQEE 623
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + RA ++ + D++ G VSL ++N G+ Y I+G +AD + ++S+
Sbjct: 624 IRVLSEEVNRARILTKDIVFTDKVGVGCKVSLEDEN-GNLITYSILGPWDADPDNYILSL 682
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI--LQVLW 157
S +A+ ++ K +G + K Y+I +Q +W
Sbjct: 683 KSKLAQEMLDKSVGAAVQFQG----KKYKISRIQSIW 715
>gi|108801108|ref|YP_641305.1| transcription elongation factor GreA [Mycobacterium sp. MCS]
gi|119870249|ref|YP_940201.1| transcription elongation factor GreA [Mycobacterium sp. KMS]
gi|126436946|ref|YP_001072637.1| transcription elongation factor GreA [Mycobacterium sp. JLS]
gi|108771527|gb|ABG10249.1| transcription elongation factor GreA [Mycobacterium sp. MCS]
gi|119696338|gb|ABL93411.1| transcription elongation factor GreA [Mycobacterium sp. KMS]
gi|126236746|gb|ABO00147.1| transcription elongation factor GreA [Mycobacterium sp. JLS]
Length = 164
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 78/145 (53%), Gaps = 9/145 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQESYDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREQQGQEEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVS 121
+ ++ A+V + SG +A +V V + GD+K+ + ++G +E V G + S
Sbjct: 68 QELLNNAKVGEAPKQSG--VALPGSVVKVYYD-GDEKDTETFLIGTREQAVNDGKLEVYS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
+SP+ ALI ++G+ + P G
Sbjct: 125 PASPLGAALIDAKVGETRTYTVPSG 149
>gi|296128797|ref|YP_003636047.1| GreA/GreB family elongation factor [Cellulomonas flavigena DSM
20109]
gi|296020612|gb|ADG73848.1| GreA/GreB family elongation factor [Cellulomonas flavigena DSM
20109]
Length = 161
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 15/148 (10%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++ +EL + Q R I I+ AR GDL EN Y AA+E Q E R+ EL
Sbjct: 10 LTQEAYDRLTEELEYLQTVGRKEITDRIAAARDEGDLKENGGYHAAREEQAKQEARIREL 69
Query: 67 ENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLV 120
+ + + I T D + G V+ V +GD+ + +I G + DV
Sbjct: 70 Q---AKLRNVQIGTPPDDGVVEPGMVVTAV--VAGDEMTFLLGSREIAGTADIDV----F 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK 148
S +SP+ A+ G ++GD + AP G +
Sbjct: 121 SPTSPLGAAIHGHKVGDSTTYEAPNGRQ 148
>gi|39995838|ref|NP_951789.1| nucleoside diphosphate kinase regulator protein [Geobacter
sulfurreducens PCA]
gi|39982602|gb|AAR34062.1| nucleoside diphosphate kinase regulator protein, putative
[Geobacter sulfurreducens PCA]
gi|307634737|gb|ADI83574.2| RNA polymerase-binding protein Rnk [Geobacter sulfurreducens KN400]
Length = 142
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 56/96 (58%)
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ELE+ + RAEV++ + D + + V+L + +G++ Y++V +A ++ +S
Sbjct: 37 HLQELEDELLRAEVVEPQQIPADVVTMNSRVALKDLATGEEMVYELVFPSDARLEENRIS 96
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I +P+ AL+G GD I+ PGG + +I ++L+
Sbjct: 97 ILAPVGTALLGYRAGDTITWKVPGGTRKIKITKILY 132
>gi|332671448|ref|YP_004454456.1| GreA/GreB family elongation factor [Cellulomonas fimi ATCC 484]
gi|332340486|gb|AEE47069.1| GreA/GreB family elongation factor [Cellulomonas fimi ATCC 484]
Length = 161
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 15/148 (10%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++ EL + E R I I+ AR GDL EN Y AA+E Q E R+ EL
Sbjct: 10 LTQEAYDRLTAELDRLKGEGRAEITARIAAARDEGDLKENGGYHAAREEQAKQEARIREL 69
Query: 67 ENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLV 120
E + + I T D + G V+ V +GD+ + +I G E DV
Sbjct: 70 E---AKLRNVQIGTPPDDGVVEPGMVVTAV--VAGDEMVFLLGSREIAGTAEIDV----F 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK 148
S +SP+ A+ G ++GD S AP G++
Sbjct: 121 SPTSPLGAAINGTKVGDTTSYTAPNGKE 148
>gi|218680300|ref|ZP_03528197.1| transcription elongation factor regulatory protein [Rhizobium etli
CIAT 894]
Length = 160
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 9/98 (9%)
Query: 49 YQAAKELQNLNE------GRMAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSG 100
Y AA + ++NE G + +L + R + S D +AFG+TV+ ++ G
Sbjct: 50 YDAANTIDDVNERRRQAAGPLRDLRYLKARLRTAQLMADASSTDAVAFGSTVTF-RRDDG 108
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
+ Y+IVG+ EAD ++G +S SP+AR L+GK +GD+
Sbjct: 109 RVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDV 146
>gi|327187956|gb|EGE55188.1| transcription elongation factor protein, GreA/GreB family
[Rhizobium etli CNPAF512]
Length = 160
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 11/100 (11%)
Query: 49 YQAAKELQNLNEGR------MAELENIITR---AEVIDISTMSGDRIAFGATVSLVEKNS 99
Y AA ++++NE R + +L + R A+V+ T S D +AFG+TV+ ++
Sbjct: 50 YDAANTIEDVNERRRHAANPLRDLRYLAARLRTAQVMPNPT-SVDVVAFGSTVTF-RRDD 107
Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
G + Y+IVG+ EAD ++G +S SP+AR L+GK GD +
Sbjct: 108 GRVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAAGDAV 147
>gi|190892195|ref|YP_001978737.1| transcription elongation factor protein, GreA/GreB family
[Rhizobium etli CIAT 652]
gi|218516641|ref|ZP_03513481.1| transcription elongation factor regulatory protein [Rhizobium etli
8C-3]
gi|190697474|gb|ACE91559.1| transcription elongation factor protein, GreA/GreB family
[Rhizobium etli CIAT 652]
Length = 160
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 11/100 (11%)
Query: 49 YQAAKELQNLNEGR------MAELENIITR---AEVIDISTMSGDRIAFGATVSLVEKNS 99
Y AA ++++NE R + +L + R A+V+ T S D +AFG+TV+ ++
Sbjct: 50 YDAANTIEDVNERRRHAANPLRDLRYLAARLRTAQVMPNPT-SVDVVAFGSTVTF-RRDD 107
Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
G + Y+IVG+ EAD ++G +S SP+AR L+GK GD +
Sbjct: 108 GRVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAAGDAV 147
>gi|323359453|ref|YP_004225849.1| transcription elongation factor [Microbacterium testaceum StLB037]
gi|323275824|dbj|BAJ75969.1| transcription elongation factor [Microbacterium testaceum StLB037]
Length = 163
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 75/153 (49%), Gaps = 9/153 (5%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D++ QEL R I K I AR GDL EN Y AAK+ Q E R+ L
Sbjct: 10 LTQDAYDRLAQELEHLSTTGREEIAKRIEIAREEGDLKENGGYHAAKDEQGKQEARIRTL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK---KNYQIVGDQEADVQSGLVSIS 123
+ ++ A+V + G + G V+ V +K N +I + E DV S +
Sbjct: 70 QQLLKDAKVGEAPESHG-VVESGTVVTAVVAGGEEKFLLGNREIAANSELDV----YSEA 124
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
SP+ A+IG + G+ S AP G E + EI++V
Sbjct: 125 SPLGAAIIGLKEGEKGSYTAPNGKEISVEIVKV 157
>gi|89898809|ref|YP_515919.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila felis Fe/C-56]
gi|89332181|dbj|BAE81774.1| transcription elongation and transcript cleavage factor
[Chlamydophila felis Fe/C-56]
Length = 717
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 3/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + +
Sbjct: 564 DILWTTPESFTKMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFALEKRARLQEE 623
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + RA ++ + D++ G VSL E G Y I+G +AD + ++S+
Sbjct: 624 IRVLSEEVNRARILTKDVVFTDKVGVGCKVSL-EDEKGSLITYSILGPWDADPDNYILSL 682
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +A+ ++ K +G S+ G + +Q +W
Sbjct: 683 KSKLAQEMLDKSVG--ASLQFQGKKYKISRIQSIW 715
>gi|332286963|ref|YP_004421864.1| fused trancript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila psittaci 6BC]
gi|325506501|gb|ADZ18139.1| fused trancript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila psittaci 6BC]
gi|328914193|gb|AEB55026.1| transcription elongation factor GreA [Chlamydophila psittaci 6BC]
Length = 717
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 3/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + +
Sbjct: 564 DILWTTPESFTKMKNKLQSLVDKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEE 623
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + RA ++ + D + G VSL E G+ Y I+G +AD + ++S+
Sbjct: 624 IRVLSEEVNRARILTKDIVFTDTVGVGCKVSL-EDEQGNLITYSILGPWDADPDNYILSL 682
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +A+ ++ K +G S+ G + +Q +W
Sbjct: 683 KSKLAQEMLNKSVG--ASLQFQGKKYKISRIQSIW 715
>gi|282889896|ref|ZP_06298434.1| hypothetical protein pah_c005o031 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500219|gb|EFB42500.1| hypothetical protein pah_c005o031 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 731
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 71/133 (53%), Gaps = 1/133 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I T +G+ + Q+ +R E + I AR+ GDL EN+EY+ A E ++ +G +
Sbjct: 580 IWTTEEGYLQTQERIRQIGTTEVVENAREIEAARSLGDLRENSEYKFALEKRSRLQGELK 639
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + RA +I + ++++ G+ V L E + Y I+G +AD + ++S S
Sbjct: 640 RLSEQLNRARIITKDDIYLNQVSVGSIVEL-EDPEKNVVTYTILGPWDADADTNILSFQS 698
Query: 125 PIARALIGKELGD 137
A A++G+++G+
Sbjct: 699 KFAEAMLGRKVGE 711
>gi|300770814|ref|ZP_07080692.1| transcription elongation factor GreA [Sphingobacterium spiritivorum
ATCC 33861]
gi|300762371|gb|EFK59189.1| transcription elongation factor GreA [Sphingobacterium spiritivorum
ATCC 33861]
Length = 79
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 43/64 (67%)
Query: 92 VSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYE 151
V + K +G + YQ+V + EAD++SG +S+ SPIA+ L+GK GD ++ P G+ +E
Sbjct: 14 VRIKNKKNGSEMTYQLVSETEADLKSGKISVKSPIAQGLLGKSKGDTATIEVPAGKIEFE 73
Query: 152 ILQV 155
I+++
Sbjct: 74 IMEI 77
>gi|86742583|ref|YP_482983.1| GreA/GreB family elongation factor [Frankia sp. CcI3]
gi|86569445|gb|ABD13254.1| GreA/GreB family elongation factor [Frankia sp. CcI3]
Length = 160
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 1/146 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T + +D+++ EL + R I I AR GDL EN Y AAKE Q E
Sbjct: 1 MTQQTWLTQEAYDRLRSELDYLTGPWRTEIATKIEAAREEGDLKENGGYHAAKEEQGKQE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +L +++ A+V + +G+ G V + + + + I ++ +
Sbjct: 61 ARIRQLTDLLRDAQVGEAPAATGE-AGPGTVVEVRFSGERETEKFLIGSREDHSTPIEVF 119
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S +SP+ A+ G + G+ +S P G
Sbjct: 120 SPASPLGGAVSGHKAGETVSYTLPNG 145
>gi|170750231|ref|YP_001756491.1| GreA/GreB family elongation factor [Methylobacterium radiotolerans
JCM 2831]
gi|170656753|gb|ACB25808.1| GreA/GreB family elongation factor [Methylobacterium radiotolerans
JCM 2831]
Length = 157
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 45/68 (66%), Gaps = 3/68 (4%)
Query: 78 ISTMSGDRIAFGATVSLV-EKNSGD--KKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134
+ GD + FG+TV++V E SG ++ ++IVG+ EAD G +S +P+ARA+ GK
Sbjct: 80 VEPKGGDTVQFGSTVTVVREDESGKETRQTFRIVGEDEADPHKGSISYVAPLARAITGKT 139
Query: 135 LGDIISVN 142
+GD++ VN
Sbjct: 140 IGDVVEVN 147
>gi|325003219|ref|ZP_08124331.1| transcription elongation factor G [Pseudonocardia sp. P1]
Length = 162
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D+++ EL E RP I I+ R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQDAYDRLKSELDGLI-ENRPVIAAEINARREEGDLKENGGYHAAREEQGQQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124
+ ++ A+V + S D A G ++L ++ D + ++G +E L +S +S
Sbjct: 68 QELLRTAQV-GTAPSSADEAAPGTVLTLKYEDDDDTEKV-LLGSREEGSHGDLQVISPNS 125
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ AL+G + GD P G
Sbjct: 126 PLGAALLGAKPGDTREYQLPDG 147
>gi|240170287|ref|ZP_04748946.1| transcription elongation factor GreA [Mycobacterium kansasii ATCC
12478]
Length = 164
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 75/144 (52%), Gaps = 7/144 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQESHDRLKAELD-QLIANRPIIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNS--GDKKNYQIVGDQEA--DVQSGLVSI 122
+++++ A+V + T SG +A +V V N D + + I QE D + + S
Sbjct: 68 QDLLSNAKVGEAPTQSG--VALPGSVVKVYYNGDESDTETFLIATRQEGVNDGKLEVYSP 125
Query: 123 SSPIARALIGKELGDIISVNAPGG 146
+SP+ ALI ++G+ S P G
Sbjct: 126 NSPLGGALIDAKVGETRSYKVPNG 149
>gi|254563199|ref|YP_003070294.1| GreA/GreB family transcription elongation factor [Methylobacterium
extorquens DM4]
gi|254270477|emb|CAX26477.1| putative GreA/GreB family transcription elongation factor
[Methylobacterium extorquens DM4]
Length = 154
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
I GD + FGATV+++ ++ ++ ++IVG+ EAD +G +S +P+A+AL GK +GD
Sbjct: 81 IEAFEGDTVRFGATVTVLREDD-TRQTFRIVGEDEADPSAGSISYVAPLAQALTGKGVGD 139
Query: 138 IISVNAPGGEKTYEILQV 155
++VN + +EI ++
Sbjct: 140 TVTVN----DHEFEIAEI 153
>gi|222086639|ref|YP_002545173.1| transcription elongation factor protein [Agrobacterium radiobacter
K84]
gi|221724087|gb|ACM27243.1| transcription elongation factor protein [Agrobacterium radiobacter
K84]
Length = 160
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 5/72 (6%)
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP+A+ L+GK +GD+ SV
Sbjct: 93 DIVAFGSTVTF-SRDDGRVQTYRIVGEDEADPKTGSISFVSPVAKLLMGKSVGDVASV-- 149
Query: 144 PGGEKTYEILQV 155
G++ EI+ +
Sbjct: 150 --GDQELEIIAI 159
>gi|260576470|ref|ZP_05844460.1| GreA/GreB family elongation factor [Rhodobacter sp. SW2]
gi|259021353|gb|EEW24659.1| GreA/GreB family elongation factor [Rhodobacter sp. SW2]
Length = 167
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + A +D S+ +AFGA V V G ++ +QI G+ EAD ++ SP
Sbjct: 72 LEARLRSAIPVDPSSQPAGEVAFGARVE-VALADGSRQVWQITGEDEADATQNRIAPQSP 130
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+G E+GD++ P G E+L + +
Sbjct: 131 LARALLGAEVGDLVIWRKPSGPVELEVLAIAY 162
>gi|256833112|ref|YP_003161839.1| transcription elongation factor GreA [Jonesia denitrificans DSM
20603]
gi|256686643|gb|ACV09536.1| transcription elongation factor GreA [Jonesia denitrificans DSM
20603]
Length = 160
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ EL R I I++AR GDL EN Y AA+E Q NE R+ EL
Sbjct: 9 LTQEAYDRLRAELDHLSGPARQEITNRIAQARDEGDLKENGGYHAAREEQGKNEARIHEL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISSP 125
E + I I T D + + +V +GD+ + + + AD + S SP
Sbjct: 69 EEKLRN---IRIGTPPDDGVVEPGMI-VVADVAGDEMTFLLGSREIADTTDLDVYSEQSP 124
Query: 126 IARALIGKELGDIISVNAPGG 146
+ A+ G+++G+ + AP G
Sbjct: 125 LGSAINGRKVGESTAYTAPNG 145
>gi|149378117|ref|ZP_01895837.1| transcription elongation factor GreB [Marinobacter algicola DG893]
gi|149357602|gb|EDM46104.1| transcription elongation factor GreB [Marinobacter algicola DG893]
Length = 108
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
++ FGA V+ +E GD+ Y++VG E D+ G +SI SP+ARAL+GK + D + V P
Sbjct: 30 KMFFGAWVT-IESEDGDESTYRLVGPDEFDLSRGYLSIDSPMARALLGKRIDDEVGVRTP 88
Query: 145 GG 146
G
Sbjct: 89 DG 90
>gi|117929094|ref|YP_873645.1| transcription elongation factor GreA [Acidothermus cellulolyticus
11B]
gi|117649557|gb|ABK53659.1| transcription elongation factor GreA [Acidothermus cellulolyticus
11B]
Length = 162
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++++ E R I + I ARA GDL EN Y AAKE Q E R+ +L
Sbjct: 10 LTQEAYERLTAEYNHLIGPARAEIARKIEAARAEGDLRENGGYHAAKEEQGKMEARIRQL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I+ A+V + + D + V V G++ + + +E+ S +SP+
Sbjct: 70 RQILENAKVGEPP--ADDGVVEPGMVVTVRYEDGEELTFLLGSREESAAGIEAFSPNSPL 127
Query: 127 ARALIGKELGDIISVNAPGG 146
AL+GK +GD S P G
Sbjct: 128 GSALLGKRVGDSASYTLPTG 147
>gi|255327346|ref|ZP_05368420.1| transcription elongation factor GreA [Rothia mucilaginosa ATCC
25296]
gi|255295626|gb|EET74969.1| transcription elongation factor GreA [Rothia mucilaginosa ATCC
25296]
Length = 165
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 73/146 (50%), Gaps = 10/146 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T FD++ QEL R I+ I++AR GDL EN Y AA++ Q NE R+ +L
Sbjct: 9 LTQDAFDRLTQELEHLSGPYRQEIVDRIAQARDEGDLRENGGYHAARDEQAKNEARIKQL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE------ADVQSGLV 120
++++ A++ + G ++ G ++E + ++G +E A +
Sbjct: 69 KHLLETAQIGEAPVDDG-VVSHGM---VIEAEVAGRTLKFLLGSREIEDTLPAGTDLKVF 124
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S SP+ A++G + GD ++ AP G
Sbjct: 125 SEKSPLGAAIMGAKQGDEVTYQAPNG 150
>gi|318056471|ref|ZP_07975194.1| transcription elongation factor GreA [Streptomyces sp. SA3_actG]
gi|318080242|ref|ZP_07987574.1| transcription elongation factor GreA [Streptomyces sp. SA3_actF]
gi|333026761|ref|ZP_08454825.1| putative transcription elongation factor GreA [Streptomyces sp.
Tu6071]
gi|332746613|gb|EGJ77054.1| putative transcription elongation factor GreA [Streptomyces sp.
Tu6071]
Length = 165
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++++++EL + R I K I EAR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNRLKEELEYLSGPARTEIAKKIEEAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V + G + G V++ + + D + + + A S SP
Sbjct: 71 TQLLQHAKVGEAPADDG-IVEPGMVVTIAFDGDEDDTLTFLMASREYASSDIETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ + GK++GD P G+K
Sbjct: 130 LGTGVNGKKVGDTAEYELPNGKK 152
>gi|229819572|ref|YP_002881098.1| transcription elongation factor GreA [Beutenbergia cavernae DSM
12333]
gi|229565485|gb|ACQ79336.1| transcription elongation factor GreA [Beutenbergia cavernae DSM
12333]
Length = 160
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T FD+++ E R I I AR GDL EN Y AA+E Q E R+ +L
Sbjct: 8 LTQDAFDRLKAEHDHLTGVGRVEIADKIEAAREEGDLKENGGYHAAREEQAKQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLVS 121
E I+ A+V + G + G V+ K +GD+ + ++ GD + DV S
Sbjct: 68 EEILRTAQVGEAPADDG-VVEPGMVVTA--KVAGDEMRFLLGSREVAGDTDLDV----YS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147
SSP+ A++GK++G+ P G+
Sbjct: 121 PSSPLGAAIMGKKVGEKAEYRTPSGK 146
>gi|295838659|ref|ZP_06825592.1| transcription elongation factor GreA [Streptomyces sp. SPB74]
gi|197699092|gb|EDY46025.1| transcription elongation factor GreA [Streptomyces sp. SPB74]
Length = 165
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++++++EL + R I K I EAR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNRLKEELEYLSGPARTEIAKKIEEAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V + G + G V++ + + D + + + A S SP
Sbjct: 71 TQLLQHAKVGEAPADDG-IVEPGMVVTIAFDGDEDDTLTFLMASREYASSDIETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ + GK++GD P G+K
Sbjct: 130 LGTGVNGKKVGDTAEYELPNGKK 152
>gi|329942321|ref|ZP_08291131.1| transcription elongation factor GreA domain protein [Chlamydophila
psittaci Cal10]
gi|313847560|emb|CBY16548.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
gi|328815231|gb|EGF85219.1| transcription elongation factor GreA domain protein [Chlamydophila
psittaci Cal10]
Length = 717
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 3/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + +
Sbjct: 564 DILWTTPESFTKMKNKLQSLVGKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEE 623
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + RA ++ + D + G VSL E G+ Y I+G +AD + ++S+
Sbjct: 624 IRVLSEEVNRARILTKDIVFTDTVGVGCKVSL-EDEQGNLITYSILGPWDADPDNYILSL 682
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +A+ ++ K +G S+ G + +Q +W
Sbjct: 683 KSKLAQEMLNKSVG--ASLQFQGKKYKISRIQSIW 715
>gi|163853276|ref|YP_001641319.1| transcription elongation factor GreA/GreB domain-containing protein
[Methylobacterium extorquens PA1]
gi|163664881|gb|ABY32248.1| transcription elongation factor GreA/GreB domain protein
[Methylobacterium extorquens PA1]
Length = 154
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+ GD + FGATV+++ ++ ++ ++IVG+ EAD +G +S +P+A+AL GK +GD
Sbjct: 81 VEAFEGDTVRFGATVTVLREDDT-RQTFRIVGEDEADPSAGSISYVAPLAQALTGKGVGD 139
Query: 138 IISVNAPGGEKTYEILQV 155
++VN + +EI ++
Sbjct: 140 TVTVN----DHEFEIAEI 153
>gi|167949283|ref|ZP_02536357.1| transcription elongation factor GreB [Endoriftia persephone
'Hot96_1+Hot96_2']
gi|110589334|gb|ABG77176.1| transcription elongation factor [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 166
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 69/123 (56%), Gaps = 8/123 (6%)
Query: 7 VTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRM 63
+TS G ++ E + W+++ E ++KA+S A A GD SENAEY KEL+ ++ R+
Sbjct: 39 ITSDGHQRLLAEEQGLWKRRRE---VVKALSAAAAEGDRSENAEYIYRKKELREIDR-RI 94
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L+ I +V++ + ++ F A V+L E G Y+IVG E D Q+ +S+
Sbjct: 95 RYLQKRIPELKVVEQPPSNRQQVFFAAWVTL-EDEQGVTHRYRIVGPDEIDHQADYISMD 153
Query: 124 SPI 126
SP+
Sbjct: 154 SPL 156
>gi|302519408|ref|ZP_07271750.1| transcription elongation factor greA [Streptomyces sp. SPB78]
gi|302428303|gb|EFL00119.1| transcription elongation factor greA [Streptomyces sp. SPB78]
Length = 165
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++++++EL + R I K I EAR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNRLKEELEYLSGPARTEIAKKIEEAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V + G + G V++ + + D + + + A S SP
Sbjct: 71 TQLLQHAKVGEAPADDG-IVEPGMVVTIAFDGDEDDTLTFLMASREYASSDIETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ + GK++GD P G+K
Sbjct: 130 LGTGVNGKKVGDTAEYELPNGKK 152
>gi|218532092|ref|YP_002422908.1| GreA/GreB family elongation factor [Methylobacterium
chloromethanicum CM4]
gi|218524395|gb|ACK84980.1| GreA/GreB family elongation factor [Methylobacterium
chloromethanicum CM4]
Length = 154
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+ GD + FGATV+++ ++ ++ ++IVG+ EAD +G +S +P+A+AL GK +GD
Sbjct: 81 VEAFEGDTVRFGATVTVLREDD-TRQTFRIVGEDEADPSAGSISYVAPLAQALTGKGVGD 139
Query: 138 IISVNAPGGEKTYEILQV 155
++VN + +EI ++
Sbjct: 140 TVTVN----DHEFEIAEI 153
>gi|62184651|ref|YP_219436.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila abortus S26/3]
gi|62147718|emb|CAH63462.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
Length = 717
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 78/155 (50%), Gaps = 3/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + +
Sbjct: 564 DILWTTPESFTKMKNKLQSLVGKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEE 623
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + RA ++ + D + G VSL E G+ Y I+G +AD + ++S+
Sbjct: 624 IRVLSEEVNRARILTKDIVFTDTVGVGCKVSL-EDEQGNLITYSILGPWDADPDNYILSL 682
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +A+ ++ K +G S+ G + +Q +W
Sbjct: 683 KSKLAQEMLNKSVG--ASLQFQGKKYKISRIQSIW 715
>gi|146343253|ref|YP_001208301.1| transcription elongation factor regulatory protein [Bradyrhizobium
sp. ORS278]
gi|146196059|emb|CAL80086.1| putative transcription elongation factor (greB) (Transcript
cleavage factor greB) [Bradyrhizobium sp. ORS278]
Length = 174
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
IAFG+TV+ + G + Y+IVG+ EAD + G +S SP+AR L+GK GD++ V
Sbjct: 109 IAFGSTVTF-RRGDGRTQTYRIVGEDEADPKHGTISHVSPVARRLMGKTAGDVVEVTG-- 165
Query: 146 GEKTYEILQV 155
+ EIL++
Sbjct: 166 --QELEILRI 173
>gi|192292723|ref|YP_001993328.1| transcription elongation factor regulatory protein
[Rhodopseudomonas palustris TIE-1]
gi|192286472|gb|ACF02853.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
TIE-1]
Length = 160
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
S D IAFG+TV+ + G + Y+IVG+ EAD +G +S +P+AR L+GK +GD++
Sbjct: 91 STDEIAFGSTVTF-RRADGRVQTYRIVGEDEADPNAGTISFVAPVARLLMGKSVGDVV 147
>gi|116749867|ref|YP_846554.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans
MPOB]
gi|116698931|gb|ABK18119.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans
MPOB]
Length = 141
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + +AEV+ + D + + V + + ++G + Y +V EADV+ +S+ +P
Sbjct: 40 LEEELRKAEVVAARNIPRDTVTMNSKVRVKDLDTGIETIYHLVFPGEADVKQNRISVLAP 99
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I ALIG +GD+I N P G K I ++L+
Sbjct: 100 IGTALIGYAVGDVIQWNVPAGTKKLRIEEILY 131
>gi|111225557|ref|YP_716351.1| transcription elongation factor GreA [Frankia alni ACN14a]
gi|111153089|emb|CAJ64836.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Frankia alni ACN14a]
Length = 163
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ EL + R I I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 10 LTQEAYDRLRSELDYLTGPWRTEIATKIEAAREEGDLKENGGYHAAKEEQGKQEARIRQL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+++ A+V + +G+ G V + + + + I ++ + S +SP+
Sbjct: 70 SDLLRDAQVGESPATTGE-AGPGTVVEVRFPGEQETEKFLIGSREDHSAPIDVFSPASPL 128
Query: 127 ARALIGKELGDIISVNAPGG 146
A+ G + G+ +S P G
Sbjct: 129 GGAVNGHKAGETVSYTLPNG 148
>gi|207111191|ref|ZP_03245353.1| transcription elongation factor GreA [Helicobacter pylori
HPKX_438_CA4C1]
Length = 60
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 104 NYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+Y IVG E+D GL+S SPIA++LIGK GD +S+ P GE +EIL +
Sbjct: 8 SYTIVGSVESDPAKGLISFGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDI 59
>gi|269794151|ref|YP_003313606.1| transcription elongation factor [Sanguibacter keddieii DSM 10542]
gi|269096336|gb|ACZ20772.1| transcription elongation factor [Sanguibacter keddieii DSM 10542]
Length = 160
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D++Q EL E R I I+ AR GDL EN Y AA+E Q NE R+ EL
Sbjct: 9 LTQEAHDRLQAELAHLTGEGRTDITDRIAAARDEGDLKENGGYHAAREEQAKNEARIREL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISSP 125
+ + I T D + V E +GD+ + + + AD + S SP
Sbjct: 69 ---TEKLRSVRIGTPPDDGVVEQGMVVTAEV-AGDEMVFLLGSREIADTTDIDVYSEKSP 124
Query: 126 IARALIGKELGDIISVNAPGGE 147
+ A++GK++G+ + AP G+
Sbjct: 125 LGAAILGKKIGETAAYTAPNGK 146
>gi|330881018|gb|EGH15167.1| transcription elongation factor GreB [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 119
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 1/106 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L + R+ L
Sbjct: 6 ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
+ V+ S R+ FGA V +E +GD K ++IVG E
Sbjct: 66 RKRLEDMRVVQYSPEQEGRVFFGAWVE-IENEAGDLKKFRIVGYDE 110
>gi|269957418|ref|YP_003327207.1| GreA/GreB family elongation factor [Xylanimonas cellulosilytica DSM
15894]
gi|269306099|gb|ACZ31649.1| GreA/GreB family elongation factor [Xylanimonas cellulosilytica DSM
15894]
Length = 160
Score = 57.0 bits (136), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 73/153 (47%), Gaps = 16/153 (10%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL R I + I+ AR GDL EN Y AA+E Q NE R+ EL
Sbjct: 9 LTQEAHDRLKAELENLSGPARTEIAERIAAARDEGDLKENGGYHAAREEQAKNEARIREL 68
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNY-----QIVGDQEADVQSGLV 120
+ + + T D + G V + + +G+ + +I G + DV
Sbjct: 69 TE---KLRTVQVGTPPDDGMVEVGMLVDV--RLAGEPMTFLLGSREIAGTTDVDV----Y 119
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEI 152
S +SP+ A+ G +GD +S AP G E T EI
Sbjct: 120 SPTSPLGAAIDGHSIGDTVSYTAPNGKEFTVEI 152
>gi|255596472|ref|XP_002536547.1| Transcription elongation factor greA, putative [Ricinus communis]
gi|223519331|gb|EEF25837.1| Transcription elongation factor greA, putative [Ricinus communis]
Length = 196
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 11/102 (10%)
Query: 49 YQAAKELQNLNEGRMAE---------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNS 99
Y+AA ++++NE R + AEV+ + S + + FG+TV+ +
Sbjct: 86 YEAASAIEDINERRRQTAIPLRDARYFAERVRTAEVMP-APASSEVVVFGSTVTY-SRED 143
Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
G + Y+IVG+ EAD ++G +S SP+AR L+GK +GDI+++
Sbjct: 144 GRVQKYRIVGEDEADPKAGSISYVSPVARLLMGKTVGDILTL 185
>gi|145222636|ref|YP_001133314.1| transcription elongation factor GreA [Mycobacterium gilvum PYR-GCK]
gi|315443101|ref|YP_004075980.1| transcription elongation factor GreA [Mycobacterium sp. Spyr1]
gi|145215122|gb|ABP44526.1| transcription elongation factor GreA [Mycobacterium gilvum PYR-GCK]
gi|315261404|gb|ADT98145.1| transcription elongation factor GreA [Mycobacterium sp. Spyr1]
Length = 164
Score = 57.0 bits (136), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 9/145 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTEEAYDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREQQGQEEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV--EKNSGDKKNYQIVGDQEADVQSG---LVS 121
+ ++ A+V + SG IA +V V + + D + + ++G +E V G + S
Sbjct: 68 QELLNDAKVGEAPKQSG--IALPGSVVKVYYDDDENDTETF-LIGTREQGVNDGKLEVYS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
+SP+ ALI ++G+ S P G
Sbjct: 125 PNSPLGGALIDAKVGESRSYTVPSG 149
>gi|317508388|ref|ZP_07966060.1| transcription elongation factor GreA [Segniliparus rugosus ATCC
BAA-974]
gi|316253312|gb|EFV12710.1| transcription elongation factor GreA [Segniliparus rugosus ATCC
BAA-974]
Length = 163
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP + I+E R GDL EN Y AA+E Q E R+ +L++++ A+V T SG +
Sbjct: 27 RPALAAEINERREEGDLKENGGYHAAREEQGQQEARIRQLQDLLATAKVGAAPTQSG--V 84
Query: 87 AFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVSISSPIARALIGKELGDIISV 141
A +V V + GDK + + ++ +E QSG + S +SP+ AL+ ++G+
Sbjct: 85 ALPGSVVTVYYD-GDKNDTETFLIATREEGAQSGKLEVYSPNSPLGGALLDAKVGETREY 143
Query: 142 NAPGG 146
P G
Sbjct: 144 TVPNG 148
>gi|319949700|ref|ZP_08023731.1| transcription elongation factor GreA [Dietzia cinnamea P4]
gi|319436630|gb|EFV91719.1| transcription elongation factor GreA [Dietzia cinnamea P4]
Length = 165
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP I I+E R GDL ENA Y AA+E Q E R+ +++++ A+V + T SG +
Sbjct: 29 RPVIAAEINERREEGDLKENAGYHAAREQQGQEEARIRTIDDLLANAQVGETPTESGVAL 88
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQ-----EADVQSGLVSISSPIARALIGKELGDIISV 141
G+ V + D K ++G + + D++ + S SP+ +A++G + G+
Sbjct: 89 -IGSVVRAYYNGNEDTKETFLIGTRGEGSGKDDLE--IYSPDSPLGKAVLGAKNGETREY 145
Query: 142 NAPGGEK 148
AP G+K
Sbjct: 146 TAPNGKK 152
>gi|294631104|ref|ZP_06709664.1| transcription elongation factor GreA [Streptomyces sp. e14]
gi|292834437|gb|EFF92786.1| transcription elongation factor GreA [Streptomyces sp. e14]
Length = 166
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNKLKDELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V + + +A G V++ + + D + + + A S SP
Sbjct: 71 TQLLENAKVGEAPASTDGAVAPGMVVTIAFDGDEDDTLTFLLASREYASSDIETYSPQSP 130
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ +IG ++G+ P G+K
Sbjct: 131 LGSGVIGHKVGEDAEYELPNGKK 153
>gi|15608220|ref|NP_215596.1| transcription elongation factor GreA [Mycobacterium tuberculosis
H37Rv]
gi|15840516|ref|NP_335553.1| transcription elongation factor GreA [Mycobacterium tuberculosis
CDC1551]
gi|31792271|ref|NP_854764.1| transcription elongation factor GreA [Mycobacterium bovis
AF2122/97]
gi|121637009|ref|YP_977232.1| transcription elongation factor GreA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148660865|ref|YP_001282388.1| transcription elongation factor GreA [Mycobacterium tuberculosis
H37Ra]
gi|148822289|ref|YP_001287043.1| transcription elongation factor GreA [Mycobacterium tuberculosis
F11]
gi|167967359|ref|ZP_02549636.1| transcription elongation factor GreA [Mycobacterium tuberculosis
H37Ra]
gi|215402903|ref|ZP_03415084.1| transcription elongation factor GreA [Mycobacterium tuberculosis
02_1987]
gi|215410693|ref|ZP_03419501.1| transcription elongation factor GreA [Mycobacterium tuberculosis
94_M4241A]
gi|215426369|ref|ZP_03424288.1| transcription elongation factor GreA [Mycobacterium tuberculosis
T92]
gi|215429946|ref|ZP_03427865.1| transcription elongation factor GreA [Mycobacterium tuberculosis
EAS054]
gi|215445235|ref|ZP_03431987.1| transcription elongation factor GreA [Mycobacterium tuberculosis
T85]
gi|218752760|ref|ZP_03531556.1| transcription elongation factor GreA [Mycobacterium tuberculosis GM
1503]
gi|219556957|ref|ZP_03536033.1| transcription elongation factor GreA [Mycobacterium tuberculosis
T17]
gi|224989482|ref|YP_002644169.1| putative transcription elongation factor [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253799884|ref|YP_003032885.1| transcription elongation factor greA [Mycobacterium tuberculosis
KZN 1435]
gi|254363991|ref|ZP_04980037.1| transcription elongation factor greA (transcript cleavage factor
greA ) [Mycobacterium tuberculosis str. Haarlem]
gi|254550071|ref|ZP_05140518.1| transcription elongation factor GreA [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260186001|ref|ZP_05763475.1| transcription elongation factor GreA [Mycobacterium tuberculosis
CPHL_A]
gi|260200115|ref|ZP_05767606.1| transcription elongation factor GreA [Mycobacterium tuberculosis
T46]
gi|260204309|ref|ZP_05771800.1| transcription elongation factor GreA [Mycobacterium tuberculosis
K85]
gi|289442507|ref|ZP_06432251.1| transcription elongation factor greA [Mycobacterium tuberculosis
T46]
gi|289446666|ref|ZP_06436410.1| transcription elongation factor greA [Mycobacterium tuberculosis
CPHL_A]
gi|289555137|ref|ZP_06444347.1| transcription elongation factor greA [Mycobacterium tuberculosis
KZN 605]
gi|289569068|ref|ZP_06449295.1| transcription elongation factor greA [Mycobacterium tuberculosis
T17]
gi|289573723|ref|ZP_06453950.1| transcription elongation factor greA [Mycobacterium tuberculosis
K85]
gi|289744820|ref|ZP_06504198.1| transcription elongation factor greA [Mycobacterium tuberculosis
02_1987]
gi|289749613|ref|ZP_06508991.1| transcription elongation factor greA [Mycobacterium tuberculosis
T92]
gi|289753143|ref|ZP_06512521.1| transcription elongation factor greA [Mycobacterium tuberculosis
EAS054]
gi|289757165|ref|ZP_06516543.1| transcription elongation factor greA [Mycobacterium tuberculosis
T85]
gi|289761218|ref|ZP_06520596.1| transcription elongation factor greA (transcript cleavage factor
greA) [Mycobacterium tuberculosis GM 1503]
gi|294993263|ref|ZP_06798954.1| transcription elongation factor GreA [Mycobacterium tuberculosis
210]
gi|297633615|ref|ZP_06951395.1| transcription elongation factor GreA [Mycobacterium tuberculosis
KZN 4207]
gi|297730600|ref|ZP_06959718.1| transcription elongation factor GreA [Mycobacterium tuberculosis
KZN R506]
gi|298524578|ref|ZP_07011987.1| transcription elongation factor greA [Mycobacterium tuberculosis
94_M4241A]
gi|306775228|ref|ZP_07413565.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu001]
gi|306781857|ref|ZP_07420194.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu002]
gi|306783784|ref|ZP_07422106.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu003]
gi|306788143|ref|ZP_07426465.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu004]
gi|306792476|ref|ZP_07430778.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu005]
gi|306796872|ref|ZP_07435174.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu006]
gi|306802759|ref|ZP_07439427.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu008]
gi|306806942|ref|ZP_07443610.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu007]
gi|306967143|ref|ZP_07479804.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu009]
gi|306971331|ref|ZP_07483992.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu010]
gi|307079059|ref|ZP_07488229.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu011]
gi|307083622|ref|ZP_07492735.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu012]
gi|313657927|ref|ZP_07814807.1| transcription elongation factor GreA [Mycobacterium tuberculosis
KZN V2475]
gi|54037218|sp|P64280|GREA_MYCBO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54041328|sp|P64279|GREA_MYCTU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166200676|sp|A1KHL8|GREA_MYCBP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166200679|sp|A5U1C6|GREA_MYCTA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799563|sp|C1AM72|GREA_MYCBT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|2896717|emb|CAA17196.1| PROBABLE TRANSCRIPTION ELONGATION FACTOR GREA (Transcript cleavage
factor greA) [Mycobacterium tuberculosis H37Rv]
gi|13880692|gb|AAK45367.1| transcription elongation factor GreA [Mycobacterium tuberculosis
CDC1551]
gi|31617859|emb|CAD93969.1| PROBABLE TRANSCRIPTION ELONGATION FACTOR GREA (Transcript cleavage
factor greA) [Mycobacterium bovis AF2122/97]
gi|121492656|emb|CAL71125.1| Probable transcription elongation factor greA [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|134149505|gb|EBA41550.1| transcription elongation factor greA (transcript cleavage factor
greA ) [Mycobacterium tuberculosis str. Haarlem]
gi|148505017|gb|ABQ72826.1| transcription elongation factor GreA [Mycobacterium tuberculosis
H37Ra]
gi|148720816|gb|ABR05441.1| transcription elongation factor greA [Mycobacterium tuberculosis
F11]
gi|224772595|dbj|BAH25401.1| putative transcription elongation factor [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253321387|gb|ACT25990.1| transcription elongation factor greA [Mycobacterium tuberculosis
KZN 1435]
gi|289415426|gb|EFD12666.1| transcription elongation factor greA [Mycobacterium tuberculosis
T46]
gi|289419624|gb|EFD16825.1| transcription elongation factor greA [Mycobacterium tuberculosis
CPHL_A]
gi|289439769|gb|EFD22262.1| transcription elongation factor greA [Mycobacterium tuberculosis
KZN 605]
gi|289538154|gb|EFD42732.1| transcription elongation factor greA [Mycobacterium tuberculosis
K85]
gi|289542822|gb|EFD46470.1| transcription elongation factor greA [Mycobacterium tuberculosis
T17]
gi|289685348|gb|EFD52836.1| transcription elongation factor greA [Mycobacterium tuberculosis
02_1987]
gi|289690200|gb|EFD57629.1| transcription elongation factor greA [Mycobacterium tuberculosis
T92]
gi|289693730|gb|EFD61159.1| transcription elongation factor greA [Mycobacterium tuberculosis
EAS054]
gi|289708724|gb|EFD72740.1| transcription elongation factor greA (transcript cleavage factor
greA) [Mycobacterium tuberculosis GM 1503]
gi|289712729|gb|EFD76741.1| transcription elongation factor greA [Mycobacterium tuberculosis
T85]
gi|298494372|gb|EFI29666.1| transcription elongation factor greA [Mycobacterium tuberculosis
94_M4241A]
gi|308216254|gb|EFO75653.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu001]
gi|308325405|gb|EFP14256.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu002]
gi|308331446|gb|EFP20297.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu003]
gi|308335256|gb|EFP24107.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu004]
gi|308339062|gb|EFP27913.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu005]
gi|308342739|gb|EFP31590.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu006]
gi|308346614|gb|EFP35465.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu007]
gi|308350538|gb|EFP39389.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu008]
gi|308355188|gb|EFP44039.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu009]
gi|308359143|gb|EFP47994.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu010]
gi|308363058|gb|EFP51909.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu011]
gi|308366711|gb|EFP55562.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu012]
gi|323720471|gb|EGB29557.1| transcription elongation factor greA [Mycobacterium tuberculosis
CDC1551A]
gi|326904695|gb|EGE51628.1| transcription elongation factor greA [Mycobacterium tuberculosis
W-148]
gi|328459629|gb|AEB05052.1| transcription elongation factor greA [Mycobacterium tuberculosis
KZN 4207]
Length = 164
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 77/145 (53%), Gaps = 9/145 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQESHDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVS 121
+++++ A+V + SG +A +V V N GDK + + ++ ++ V G + S
Sbjct: 68 QDLLSNAKVGEAPKQSG--VALPGSVVKVYYN-GDKSDSETFLIATRQEGVSDGKLEVYS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
+SP+ ALI ++G+ S P G
Sbjct: 125 PNSPLGGALIDAKVGETRSYTVPNG 149
>gi|269219222|ref|ZP_06163076.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
848 str. F0332]
gi|269211369|gb|EEZ77709.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
848 str. F0332]
Length = 161
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 84/154 (54%), Gaps = 12/154 (7%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ + +++++ EL R I + I AR GDL EN YQAA+E Q+ EGR+AEL
Sbjct: 10 LSPESYERLRAELEEMTTVRRAEIARKIEAARNEGDLRENGGYQAAREEQSKLEGRIAEL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA----DVQSGLVSI 122
+++ A V + + A V + K +G+++ + ++G +EA D++ +
Sbjct: 70 THLLENATVSEPPAAT----EVQAGVIVTAKIAGEEERF-LIGSREASDHLDIE--IYPE 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
S+P+ +A++G + G+ P G K + EI+++
Sbjct: 123 SAPLGKAILGLKEGESTKFATPTGRKISVEIVKI 156
>gi|120405620|ref|YP_955449.1| transcription elongation factor GreA [Mycobacterium vanbaalenii
PYR-1]
gi|166200681|sp|A1TE43|GREA_MYCVP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|119958438|gb|ABM15443.1| transcription elongation factor GreA [Mycobacterium vanbaalenii
PYR-1]
Length = 164
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 74/144 (51%), Gaps = 7/144 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTEESYDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREQQGQEEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ-IVGDQEADVQSG---LVSI 122
+ ++ A+V + SG IA +V V + +K ++G +E V G + S
Sbjct: 68 QELLNNAKVGEAPKQSG--IALPGSVVKVYYDDDEKDTETFLIGTREQGVSDGKLEVYSP 125
Query: 123 SSPIARALIGKELGDIISVNAPGG 146
+SP+ ALI ++G+ S P G
Sbjct: 126 NSPLGGALIDAKVGESRSYTVPSG 149
>gi|15834629|ref|NP_296388.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydia muridarum Nigg]
gi|270284795|ref|ZP_06194189.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydia muridarum Nigg]
gi|270288825|ref|ZP_06195127.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydia muridarum Weiss]
gi|301336175|ref|ZP_07224377.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
muridarum MopnTet14]
gi|14194799|sp|Q9PLU1|GREA_CHLMU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|7190045|gb|AAF38898.1| transcription elongation protein, GreA/GreB family [Chlamydia
muridarum Nigg]
Length = 714
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
TS+ F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + + L
Sbjct: 567 TSESFTRMKAKLQSLIGKEMVDNAKEIEDARALGDLRENSEYKFALERRARLQEEIRVLS 626
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I RA+++ + + + G V L E G++ Y I+G +A+ + ++S+ S +A
Sbjct: 627 EEINRAKILTKDAVFTNSVGVGCKVVL-EDEQGEEDCYTILGPWDANPEEKILSLKSKLA 685
Query: 128 RALIGKELGD 137
+ ++GK +G+
Sbjct: 686 QEMVGKTVGE 695
>gi|325283338|ref|YP_004255879.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP]
gi|324315147|gb|ADY26262.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP]
Length = 165
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 81/159 (50%), Gaps = 7/159 (4%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+I +T +G++++++ L ++QE + + E SE+ + AK + E R+
Sbjct: 9 QIKLTKEGYERLEKAL-AQEQERLTEATRIVQEQMENSTDSEDTGLEDAKREKRQVEARI 67
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----L 119
ELE+ + RA VI+ G + GATV L + + + ++V EA V+ G
Sbjct: 68 EELEDTLARATVIEGGADDG-AVNLGATVVLSNETAKKEMTVKVVSAAEASVRGGDKTPR 126
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+S SP+ R L+G+ GD VN GG++ Y++ V +
Sbjct: 127 ISDDSPVGRELMGRREGDAFVVNLEGGKQVKYKVKSVSY 165
>gi|41407125|ref|NP_959961.1| transcription elongation factor GreA [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|254774087|ref|ZP_05215603.1| transcription elongation factor GreA [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41395476|gb|AAS03344.1| GreA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|48928144|gb|AAT47750.1| probable transcription elongation factor G [Mycobacterium avium]
Length = 164
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 9/145 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQESHDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVS 121
++++ A+V + SG +A +V V N GDK + + ++ ++ V G + S
Sbjct: 68 QDLLNNAKVGEAPKQSG--VALPGSVVKVYYN-GDKSDTETFLIATRQEGVNDGKLEVYS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
+SP+ ALI ++G+ S P G
Sbjct: 125 PNSPLGGALIDAKVGETRSYTVPNG 149
>gi|288917982|ref|ZP_06412341.1| transcription elongation factor GreA [Frankia sp. EUN1f]
gi|288350637|gb|EFC84855.1| transcription elongation factor GreA [Frankia sp. EUN1f]
Length = 161
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 66/146 (45%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T + +D+++ EL + R I I AR GDL EN Y AAKE Q E
Sbjct: 1 MTQQTWLTQEAYDRLRSELEYLTGTWRTEIATKIEAAREEGDLRENGGYHAAKEEQGKQE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +L +++ A V + + G V + + + + I ++ +
Sbjct: 61 ARIRQLMDLLRDARVGETAPAVSGEAGPGMIVEIRFPGEKETEKFLIGSREDHSTSIEVF 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S +SP+ A+ G + G+ ++ P G
Sbjct: 121 SPASPLGGAVTGHKAGETVNYTLPNG 146
>gi|84386347|ref|ZP_00989375.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
gi|84378771|gb|EAP95626.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
Length = 107
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGL 119
R+ L + ++D S ++ FGA V +E + G+ K ++IVG +E D + G
Sbjct: 8 RVRFLRKFLPDVTIVDYSPQQEGKVFFGAWVE-IENDDGEMKKFRIVGPEEIYGDAK-GY 65
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
+SI SP+ARAL+ KE+ D +V P G+K + I
Sbjct: 66 ISIDSPMARALLKKEVDDEFTVTTPEGDKEWFI 98
>gi|90423091|ref|YP_531461.1| transcription elongation factor regulatory protein
[Rhodopseudomonas palustris BisB18]
gi|90105105|gb|ABD87142.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
BisB18]
Length = 160
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 61/103 (59%), Gaps = 11/103 (10%)
Query: 50 QAAKELQNLNEGRMAE---------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
+AA+ + ++NE R E L + AE++ + + S D +AFG+TV+ + G
Sbjct: 51 EAAQAIADVNERRRQEAGPLRDARYLAARVRTAELMPVPS-SSDIVAFGSTVTF-RRGDG 108
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
++++IVG+ EAD ++G +S SP+AR L+ K +GD++ A
Sbjct: 109 RVQSFRIVGEDEADPKAGSISFVSPVARLLLRKSVGDVVGSGA 151
>gi|118462687|ref|YP_880450.1| transcription elongation factor GreA [Mycobacterium avium 104]
gi|118163974|gb|ABK64871.1| transcription elongation factor GreA [Mycobacterium avium 104]
Length = 159
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 9/145 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L
Sbjct: 4 LTQESHDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 62
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVS 121
++++ A+V + SG +A +V V N GDK + + ++ ++ V G + S
Sbjct: 63 QDLLNNAKVGEAPKQSG--VALPGSVVKVYYN-GDKSDTETFLIATRQEGVNDGKLEVYS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
+SP+ ALI ++G+ S P G
Sbjct: 120 PNSPLGGALIDAKVGETRSYTVPNG 144
>gi|86358113|ref|YP_470005.1| transcription elongation factor regulatory protein [Rhizobium etli
CFN 42]
gi|86282215|gb|ABC91278.1| transcription elongation factor protein [Rhizobium etli CFN 42]
Length = 160
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 61/102 (59%), Gaps = 11/102 (10%)
Query: 47 AEYQAAKELQNLNEGR------MAELENIITR---AEVIDISTMSGDRIAFGATVSLVEK 97
A Y A ++++NE R + +L + R A++I T S D +AFG TV+ +
Sbjct: 48 AAYDTAIAIEDVNERRRQAANPLRDLRYLSARLRTAQLIPDPT-SADVVAFGLTVTFT-R 105
Query: 98 NSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
+ G + Y++VG+ EAD ++G +S SP+A+ L+GK +GD++
Sbjct: 106 DDGRVQTYRLVGEDEADPKAGSISYVSPVAQLLMGKAVGDVV 147
>gi|39936890|ref|NP_949166.1| transcription elongation factor regulatory protein
[Rhodopseudomonas palustris CGA009]
gi|39650747|emb|CAE29270.1| putative transcription elongation factor greA homologue
[Rhodopseudomonas palustris CGA009]
Length = 176
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
D IAFG+TV+ + G + Y+IVG+ EAD +G +S +P+AR L+GK +GD++
Sbjct: 109 DEIAFGSTVTF-RRADGRVQTYRIVGEDEADPNAGTISFVAPVARLLMGKSVGDVV 163
>gi|159036522|ref|YP_001535775.1| transcription elongation factor GreA [Salinispora arenicola
CNS-205]
gi|157915357|gb|ABV96784.1| transcription elongation factor GreA [Salinispora arenicola
CNS-205]
Length = 165
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ + +D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+ L
Sbjct: 12 LSQEAYDRLQAELDGLIAN-RPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRILYL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS--S 124
+ ++ A+V + T D IA G V++ + D ++G +E + L S S
Sbjct: 71 KELLRTAQVGEAPT--ADTIAPGMVVTIYFDDDKDDTERFLLGSREIASTTDLTVYSPES 128
Query: 125 PIARALIGKELGDIISVNAPGG 146
I +A++G G + AP G
Sbjct: 129 AIGQAILGCRSGQTCTYTAPSG 150
>gi|240140684|ref|YP_002965164.1| putative GreA/GreB family transcription elongation factor
[Methylobacterium extorquens AM1]
gi|240010661|gb|ACS41887.1| putative GreA/GreB family transcription elongation factor
[Methylobacterium extorquens AM1]
Length = 154
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 51/78 (65%), Gaps = 5/78 (6%)
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+ GD + FGATV+++ ++ ++ ++IVG+ EAD +G +S +P+A++L GK +GD
Sbjct: 81 VEAFEGDTVRFGATVTVLREDDT-RQTFRIVGEDEADPAAGSISYVAPLAQSLTGKGVGD 139
Query: 138 IISVNAPGGEKTYEILQV 155
++VN + +EI ++
Sbjct: 140 TVTVN----DHEFEIAEI 153
>gi|118616090|ref|YP_904422.1| transcription elongation factor GreA [Mycobacterium ulcerans Agy99]
gi|183984358|ref|YP_001852649.1| transcription elongation factor GreA [Mycobacterium marinum M]
gi|118568200|gb|ABL02951.1| transcription elongation factor GreA [Mycobacterium ulcerans Agy99]
gi|183177684|gb|ACC42794.1| transcription elongation factor GreA [Mycobacterium marinum M]
Length = 164
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQESHDRLKAELD-HLIANRPIIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNS--GDKKNYQIVGDQEA--DVQSGLVSI 122
++++ A+V + SG IA +V V N D + + I QE D + + S
Sbjct: 68 QDLLNNAKVGEAPKQSG--IALPGSVVKVYYNGDQSDSETFLIATRQEGVNDGKLEVYSP 125
Query: 123 SSPIARALIGKELGDIISVNAPGG 146
+SP+ ALI ++G+ S P G
Sbjct: 126 NSPLGGALIDAKVGETRSYTVPNG 149
>gi|296140831|ref|YP_003648074.1| transcription elongation factor GreA [Tsukamurella paurometabola
DSM 20162]
gi|296028965|gb|ADG79735.1| transcription elongation factor GreA [Tsukamurella paurometabola
DSM 20162]
Length = 164
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 66/125 (52%), Gaps = 8/125 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP I I+E R GDL EN Y AA+E Q E R+ +L+ ++ A+V + T SG +
Sbjct: 28 RPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQLQELLNNAKVGEAPTQSG--V 85
Query: 87 AFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVSISSPIARALIGKELGDIISV 141
A +V V + GD+K+ + ++ +E Q G + S +SP+ ALI ++G+
Sbjct: 86 ALPGSVVKVYYD-GDEKDTETFLIATREEGAQDGELEVYSPNSPLGAALIDAKVGESREY 144
Query: 142 NAPGG 146
P G
Sbjct: 145 TIPSG 149
>gi|297170470|gb|ADI21501.1| transcription elongation factor [uncultured myxobacterium
HF0070_11L13]
Length = 91
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+++D S ++ FGA V +E + G ++IVG E + +SI SP+ARAL+ K
Sbjct: 6 KIVDYSPQQEGKVFFGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKK 64
Query: 134 ELGDIISVNAPGGEKTYEI 152
E+GD+ VN P GE ++ +
Sbjct: 65 EVGDLAVVNTPAGEASWYV 83
>gi|298206901|ref|YP_003715080.1| transcription elongation factor, putative [Croceibacter atlanticus
HTCC2559]
gi|83849535|gb|EAP87403.1| transcription elongation factor, putative [Croceibacter atlanticus
HTCC2559]
Length = 166
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+M +L+ + A ++D D + FGATV L K S + +QIVG EA+++ +
Sbjct: 70 AKMNQLKERLASARLLDPKDQPKDEVRFGATVKLKNKTSNLVQEFQIVGVDEANIKKQKI 129
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ +P+ A+IG ++ + +S N G + EIL + +
Sbjct: 130 AFVAPLVSAIIGAKVNENVSFNLGGEVRELEILSITY 166
>gi|118581250|ref|YP_902500.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM
2379]
gi|118503960|gb|ABL00443.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM
2379]
Length = 142
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 42 DLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101
+L E A+ + +++ +N+ ELE + RA+V+ + D I + V L + +SG+
Sbjct: 22 ELIEGAKARVSRDSRNI-----VELEQELHRADVVAPDGIPPDVITMNSRVCLQDMDSGE 76
Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ Y +V +A+++SG +S+ +P+ A+IG GD IS PGG
Sbjct: 77 ELVYTLVFPGDANLESGRISVLAPVGTAMIGYRTGDRISWPVPGG 121
>gi|297157679|gb|ADI07391.1| transcription elongation factor GreA [Streptomyces bingchenggensis
BCW-1]
Length = 165
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 68/141 (48%), Gaps = 2/141 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ EL + R I K I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYDQLKAELEYLSGPARVEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V + +G +A G V++ + + D + + + A S SP
Sbjct: 71 TQLLQHAKVGEAPADTG-VVAPGMVVTIAFDGDPDDSLTFLLASREYASSDIETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGG 146
+ + GK++G+ S P G
Sbjct: 130 LGSGVNGKKVGEDASYELPNG 150
>gi|257069437|ref|YP_003155692.1| transcription elongation factor GreA [Brachybacterium faecium DSM
4810]
gi|256560255|gb|ACU86102.1| transcription elongation factor GreA [Brachybacterium faecium DSM
4810]
Length = 163
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 10/150 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D++ +EL + R I + I+ AR GDL EN Y AA+E Q E R+A+L
Sbjct: 10 LTQDAYDRLAKELEELEGPGRTEIAERIAAARDEGDLKENGGYHAAREEQGKMEARIADL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI----VGDQEADVQSGLVSI 122
+ ++ A V + G + +V +G ++ + + + D + D++ + S
Sbjct: 70 QRLLKNAVVGEAPKDDG---VVEPGMVVVISMAGKERTFLLGNREIADGDEDLE--VYSS 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ A+ G +GD + AP G K++ I
Sbjct: 125 ESPLGSAIHGSRVGDTVDYTAPNG-KSFPI 153
>gi|302536479|ref|ZP_07288821.1| transcription elongation factor greA [Streptomyces sp. C]
gi|302445374|gb|EFL17190.1| transcription elongation factor greA [Streptomyces sp. C]
Length = 165
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D+++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQAAYDQLKAELDYLSGPARTEIAMKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V SG+ +A G V++ + + D + + + A S SP
Sbjct: 71 TQLLENAKVGTAPAASGE-VAPGTLVTIAFDGDEDDTLEFLLASREYASDDFETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQV 155
+ + GK++G+ P G+K T IL V
Sbjct: 130 LGAGVNGKKVGEDAQYELPNGKKATVRILAV 160
>gi|118469204|ref|YP_889509.1| transcription elongation factor GreA [Mycobacterium smegmatis str.
MC2 155]
gi|166200678|sp|A0R2X1|GREA_MYCS2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|118170491|gb|ABK71387.1| transcription elongation factor GreA [Mycobacterium smegmatis str.
MC2 155]
Length = 164
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + FD+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQEAFDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISS 124
+ ++ A+V + SG + + + D + + I QE +D + + S +S
Sbjct: 68 QELLNNAKVGEAPKQSGVALPGSVVKVYYDDDENDTETFLIATRQEGISDGKLEVYSPNS 127
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ AL+ ++G+ + P G
Sbjct: 128 PLGGALLDAKVGESRTYTVPSG 149
>gi|94985913|ref|YP_605277.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM
11300]
gi|94556194|gb|ABF46108.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM
11300]
Length = 158
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 81/158 (51%), Gaps = 10/158 (6%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS---ENAEYQAAKELQN 57
M ++IP+T++G+ ++Q+ L ++ER R+ A + A D + E+ +QAA+
Sbjct: 1 MAEEIPMTAEGYRRLQETL----EKERQRLEDATTSMAATLDDAMDLEDRSFQAAQYDLP 56
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQ 116
E R+ ELE+++ RA +++ +A G+ V L ++ + Q+V E D +
Sbjct: 57 TMEARILELEDVLARAVIVEEPQARDGGVALGSVVVLRDEQHDRELRVQLVSAVEVDALA 116
Query: 117 SGLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEI 152
G +S SP+ +AL+G+ G+ V+ Y +
Sbjct: 117 EGATQVSEDSPVGKALLGRRAGESFEVDLGSSRARYTV 154
>gi|194246641|ref|YP_002004280.1| Transcription elongation factor [Candidatus Phytoplasma mali]
gi|193806998|emb|CAP18433.1| Transcription elongation factor [Candidatus Phytoplasma mali]
Length = 162
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++++L + R +K + EAR GDLSENA+Y AA+ Q L E + ++
Sbjct: 10 LTKSGVLELKEQLHHLTEIRRIENLKILKEAREQGDLSENADYDAARNEQALIENEILKI 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+NI+ + ++I I ++ +EKN KK++ +VG E D +SI P+
Sbjct: 70 KNILKKIKIIKSLKNKEVNIGKLVELNFLEKNI--KKSFYLVGILETDPSLNKISIDCPL 127
Query: 127 ARALIGKELGDIISVNAPGGEK-TYEILQV 155
+ + G ++GD I++ + G+ EIL+V
Sbjct: 128 GKGIRGHQVGDKITIQSETGKNFQVEILKV 157
>gi|145593481|ref|YP_001157778.1| transcription elongation factor GreA [Salinispora tropica CNB-440]
gi|145302818|gb|ABP53400.1| transcription elongation factor GreA [Salinispora tropica CNB-440]
Length = 165
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ + D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+ L
Sbjct: 12 LSQEAHDRLQAELDGLIAN-RPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRIVYL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV--SISS 124
+ ++ A+V + T D +A G V++ + D ++G +E + L S S
Sbjct: 71 KELLRTAQVGEAPT--ADTVAPGMVVTIYFDDDKDDTERFLLGSREISSTTDLTVYSPES 128
Query: 125 PIARALIGKELGDIISVNAPGG 146
I +A++G G + AP G
Sbjct: 129 AIGQAILGCRPGQTCTYTAPSG 150
>gi|296394382|ref|YP_003659266.1| GreA/GreB family elongation factor [Segniliparus rotundus DSM
44985]
gi|296181529|gb|ADG98435.1| GreA/GreB family elongation factor [Segniliparus rotundus DSM
44985]
Length = 163
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 9/145 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL RP + I+E R GDL EN Y AA+E Q E R+ +L
Sbjct: 8 LTQEAHDRLKAELD-SLIANRPVLAAEINERREEGDLKENGGYHAAREEQGQQEARIRQL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVS 121
++++ A+V T SG +A +V V + GDK + + ++ +E Q G + S
Sbjct: 67 QDLLATAKVGAAPTQSG--VALPGSVVTVYYD-GDKSDTETFLIATREEGAQGGKLEVYS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
+SP+ AL+ ++G+ P G
Sbjct: 124 PNSPLGGALLDAKVGETREYTVPNG 148
>gi|239929251|ref|ZP_04686204.1| transcription elongation factor GreA [Streptomyces ghanaensis ATCC
14672]
gi|291437589|ref|ZP_06576979.1| transcription elongation factor greA [Streptomyces ghanaensis ATCC
14672]
gi|291340484|gb|EFE67440.1| transcription elongation factor greA [Streptomyces ghanaensis ATCC
14672]
Length = 165
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 2/141 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNKLKDELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V + G +A G V++ + + D + + + A + S SP
Sbjct: 71 TQLLENAKVGEAPAADGT-VAPGMVVTIAFDGDEDDTLTFLLASREYASSEIETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGG 146
+ +IG+++G+ P G
Sbjct: 130 LGTGVIGRKVGENAEYELPNG 150
>gi|329935321|ref|ZP_08285287.1| transcription elongation factor GreA [Streptomyces
griseoaurantiacus M045]
gi|329305144|gb|EGG49003.1| transcription elongation factor GreA [Streptomyces
griseoaurantiacus M045]
Length = 166
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 1/143 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNKLKDELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ +A+V + + G V++ + + D ++ + + A S SP
Sbjct: 71 TQLLEQAQVGEAQASEDGAVGPGMVVTIAFDGDEDDTLSFLLASREYASSDIETYSPQSP 130
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ +IG ++G+ P G+K
Sbjct: 131 LGSGVIGHKVGEDAEYELPNGKK 153
>gi|331694808|ref|YP_004331047.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans
CB1190]
gi|326949497|gb|AEA23194.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans
CB1190]
Length = 163
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 6/142 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + FD+++ EL + RP I I+ R GDL EN Y AA+E Q E R+ +L
Sbjct: 11 LTQEAFDRLKNELD-QLIANRPVIAAEINARREEGDLKENGGYHAAREEQGQQEARIRQL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124
+ ++ A+V T + +A TV V + D + ++G +E L +S +S
Sbjct: 70 QELLRTAQVGTAPTSTD--VASPGTVLTVRYDDDDTEQV-LLGSREEGSHGDLQVISPNS 126
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ AL+G ++G+ + P G
Sbjct: 127 PLGAALLGAKVGETREYSLPDG 148
>gi|330444026|ref|YP_004377012.1| transcription elongation factor greA [Chlamydophila pecorum E58]
gi|328807136|gb|AEB41309.1| Transcription elongation factor greA [Chlamydophila pecorum E58]
Length = 721
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 77/139 (55%), Gaps = 2/139 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D VTS+ F +++++L+ +E + I +ARA GDL EN+EY+ A E + +
Sbjct: 569 DVFWVTSQSFSRMKEKLQSLVGKEMVDNAREIEDARALGDLRENSEYKFALERRARLQEE 628
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L I +A+++ + + ++ G V+L +++ Y ++G +AD + ++S+
Sbjct: 629 IRVLSEEINKAKILTKADVHTHKVGVGCRVTL--EDAQGSIEYTLLGSWDADSEKNILSL 686
Query: 123 SSPIARALIGKELGDIISV 141
S +A+ L+GK + + + +
Sbjct: 687 QSKLAQMLLGKNIDERVQL 705
>gi|328950624|ref|YP_004367959.1| GreA/GreB family elongation factor [Marinithermus hydrothermalis
DSM 14884]
gi|328450948|gb|AEB11849.1| GreA/GreB family elongation factor [Marinithermus hydrothermalis
DSM 14884]
Length = 156
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 8/159 (5%)
Query: 1 MVDKIPVTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M +I +T G+++++ +L +++ E RI++ E+ + D ++ A +E +
Sbjct: 1 MAREIKLTKAGYERLKAQLEQEYQRLAEATRILQEQMES--FEDYEDSGLEDAKREKARI 58
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ LE+ ++RA +++ + G +A G+ + L + SG+ QIV EA V
Sbjct: 59 -EARIDSLEDTLSRAVILE-DSQGGQVVALGSRLVLQDAESGEGYEIQIVAPAEASVLEE 116
Query: 119 LVSIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ IS SP+ AL+G+ G+ + V P G + Y I+ V
Sbjct: 117 PLKISDESPVGSALLGRREGESVRVETPRGIREYRIISV 155
>gi|159185796|ref|NP_357050.2| transcription elongation factor regulatory protein [Agrobacterium
tumefaciens str. C58]
gi|159140930|gb|AAK89835.2| transcription elongation factor [Agrobacterium tumefaciens str.
C58]
Length = 160
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 60/100 (60%), Gaps = 9/100 (9%)
Query: 50 QAAKELQNLNEGR---MAELENIITRAEVIDISTMSGDR-----IAFGATVSLVEKNSGD 101
+AA ++++NE R + L ++ AE + + + D +AFG+ V+ ++ G
Sbjct: 51 EAANAIEDINERRRLSASPLRDMRYFAERVRTAQLMPDPQADGVVAFGSLVTF-SRDDGR 109
Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
+ ++IVG+ EAD +G +S SP+AR L+GK +GD++S+
Sbjct: 110 TQRFRIVGEDEADPAAGTMSYVSPVARVLMGKTIGDVVSL 149
>gi|320334564|ref|YP_004171275.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
21211]
gi|319755853|gb|ADV67610.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
21211]
Length = 160
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 80/161 (49%), Gaps = 10/161 (6%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS---ENAEYQAAKELQN 57
M KI +T +G++++++ L + ER R +A + A D + E+ QAA+
Sbjct: 1 MTQKIQMTREGYERLERAL----EHERQRRDEATASMAAVLDDAIDLEDRSLQAAQHDFA 56
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-Q 116
+ R+ ELE+ + RAE++D + + G+ V L + Q+V E +
Sbjct: 57 GMDARIMELEDALVRAEIVDTVDDADGHVRIGSVVDLHDNTQNRDVRVQLVSAVETTLLD 116
Query: 117 SGLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
G+ +S SP+ +AL+G++ GD +V+ +K Y + V
Sbjct: 117 EGITHVSDDSPVGKALLGRQRGDTFTVDLGDRQKDYTVQNV 157
>gi|254820658|ref|ZP_05225659.1| transcription elongation factor GreA [Mycobacterium intracellulare
ATCC 13950]
gi|296169944|ref|ZP_06851553.1| transcription elongation factor GreA [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295895408|gb|EFG75113.1| transcription elongation factor GreA [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 164
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 9/145 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQESHDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSG---LVS 121
++++ A+V + SG +A +V V N GDK + + ++ ++ V G + S
Sbjct: 68 QDLLNNAKVGEAPKQSG--VALPGSVVKVYYN-GDKSDTETFLIATRQEGVNDGKLEVYS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
+SP+ ALI ++G+ S P G
Sbjct: 125 PNSPLGGALIDAKVGETRSYVVPNG 149
>gi|319441736|ref|ZP_07990892.1| transcription elongation factor GreA [Corynebacterium variabile DSM
44702]
Length = 173
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++ EL + RP + I+E R GDL EN Y AA+E Q E R+ L
Sbjct: 9 LTQESYDRLNDELAALKGN-RPALAAEINERREEGDLKENGGYHAAREQQGQEEARIVYL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-----EADVQSGLVS 121
E ++ A + + SG + G+ V + D K ++G + D+++ S
Sbjct: 68 EELLDNATIGEAPAESGVAL-VGSVVHVYYDGDEDDKETFLIGTRGLESSNPDLET--YS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGGEK 148
+P+ AL+G + G+ AP G K
Sbjct: 125 TDAPLGAALVGAKEGETREYAAPNGSK 151
>gi|289643503|ref|ZP_06475621.1| transcription elongation factor GreA [Frankia symbiont of Datisca
glomerata]
gi|289506687|gb|EFD27668.1| transcription elongation factor GreA [Frankia symbiont of Datisca
glomerata]
Length = 160
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T + +D++++EL R I I AR GDL EN Y AAKE Q E
Sbjct: 1 MSQQTWLTQEAYDRLREELDHLTGTGRVEIANKIEAAREEGDLKENGGYHAAKEEQGKLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GL 119
R+ +L +++ A V G A TV V D+ ++G +E S +
Sbjct: 61 SRIRQLTDLLRDARVGQAPQFDG--AAGPGTVVEVRFPGDDETERFLIGSREDHSTSLEV 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146
S SP+ A+ G GD ++ P G
Sbjct: 119 YSAQSPLGGAVSGHRAGDTVTYTLPNG 145
>gi|302553811|ref|ZP_07306153.1| transcription elongation factor greA [Streptomyces
viridochromogenes DSM 40736]
gi|302471429|gb|EFL34522.1| transcription elongation factor greA [Streptomyces
viridochromogenes DSM 40736]
Length = 165
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNKLKAELEYLTGPARAEISAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE---ADVQSGLVSIS 123
++ A+V + G +A G V++ D ++ +E AD+++ S
Sbjct: 71 TQLLESAKVGEAPAADG-AVAPGMVVTIAFDGDEDDTLTFLLASREYASADIET--YSPQ 127
Query: 124 SPIARALIGKELGDIISVNAPGGEK 148
SP+ +IG ++G+ P G+K
Sbjct: 128 SPLGAGVIGHKVGEDAEYELPNGKK 152
>gi|330465846|ref|YP_004403589.1| transcription elongation factor grea [Verrucosispora maris
AB-18-032]
gi|328808817|gb|AEB42989.1| transcription elongation factor grea [Verrucosispora maris
AB-18-032]
Length = 165
Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +D+++ EL RP I I+ R GDL EN Y AA+E Q EGR+ L
Sbjct: 12 LSQDAYDRLKAELD-ELIANRPIIAAEINARREEGDLRENGGYHAAREEQGKAEGRILYL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS--S 124
+ ++ A+V + T D +A G V++ + D ++G +E + L S S
Sbjct: 71 KELLRTAQVGEAPT--ADAVAPGMVVTIYFDDDADDTETFLLGSREIASTTDLTVYSPES 128
Query: 125 PIARALIGKELGDIISVNAPGG 146
+ +A++G + G + AP G
Sbjct: 129 ALGKAILGGKAGQTCTYTAPSG 150
>gi|213162024|ref|ZP_03347734.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 47
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
EAD + L+S++SPIAR LIGKE D++ + PGG+ YE+L+V ++
Sbjct: 1 EADFKQNLISVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 47
>gi|320335054|ref|YP_004171765.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
21211]
gi|319756343|gb|ADV68100.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
21211]
Length = 160
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQ--EERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M I +T +GF+++Q+ L ++ EE RI++ EA A +E+ + AK +
Sbjct: 1 MARDIKLTREGFERLQRTLDHERERLEEATRILQEQMEASAD---NEDTGLEDAKREKMS 57
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ +LE+ + RA +I+ + +A GA V L + + QIV EA V G
Sbjct: 58 IEARIDDLEDTLARATLIEDHSEDAGHVALGAIVVLHNEATKKDMRVQIVSAPEASVLGG 117
Query: 119 ---LVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+S SP+ L+G++ G+ VN G++ Y++ V +
Sbjct: 118 SLPKISDDSPVGTQLLGRKTGESFVVNLENGKQVKYKVKNVEY 160
>gi|315127999|ref|YP_004070002.1| transcription elongation factor and transcript cleavage
[Pseudoalteromonas sp. SM9913]
gi|315016513|gb|ADT69851.1| transcription elongation factor and transcript cleavage
[Pseudoalteromonas sp. SM9913]
Length = 96
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
M L I +++D S + ++ FGA V +E +G+ K ++IVG E ++ +SI
Sbjct: 1 MRYLRKRIPDLKIVDYSPVQDGKVFFGAWVE-IENEAGECKKFRIVGPDEIYDRNDYISI 59
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ K++ D V P G K + +
Sbjct: 60 DSPMARALLKKQVDDDFEVMTPQGAKQWYV 89
>gi|312138729|ref|YP_004006065.1| transcription elongation factor grea/greb [Rhodococcus equi 103S]
gi|325676579|ref|ZP_08156257.1| transcription elongation factor GreA [Rhodococcus equi ATCC 33707]
gi|311888068|emb|CBH47380.1| transcription elongation factor GreA/GreB [Rhodococcus equi 103S]
gi|325552757|gb|EGD22441.1| transcription elongation factor GreA [Rhodococcus equi ATCC 33707]
Length = 164
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL + RP I I+E R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQESHDRLKNELD-QLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSISS 124
+ ++ A+V + T SG + + + D + + I +E D + + S +S
Sbjct: 68 QELLNNAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDNKLEVYSPNS 127
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ AL+ ++G+ P G
Sbjct: 128 PLGGALLNAKVGETREYTLPNG 149
>gi|332557443|ref|ZP_08411765.1| Transcription elongation factor [Rhodobacter sphaeroides WS8N]
gi|332275155|gb|EGJ20470.1| Transcription elongation factor [Rhodobacter sphaeroides WS8N]
Length = 164
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE I A ++D +T D +AFG V+ VE +G + ++I G+ EA + ++ +P
Sbjct: 72 LEARIASAILVDPATQPLDEVAFGLAVT-VEDEAGRRTVWEITGEDEAQATARRIAPQAP 130
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+G LG+ + P GE T +
Sbjct: 131 LARALMGARLGEKVVWTRPAGEVTLTV 157
>gi|218673855|ref|ZP_03523524.1| transcription elongation factor regulatory protein [Rhizobium etli
GR56]
Length = 160
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 9/101 (8%)
Query: 49 YQAAKELQNLNEGR------MAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSG 100
Y AA ++++NE R + +L + R + S D +AFG+TV+ ++ G
Sbjct: 50 YDAASIIEDVNERRRQTANPLRDLRYLAARLRTAQLMPDPTSADVVAFGSTVTF-RRDDG 108
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
+ Y+IVG+ EA+ ++ +S SP+AR L+GK GD + V
Sbjct: 109 RVQTYRIVGEDEAEPKAASISYLSPVARLLMGKAAGDAVEV 149
>gi|218662438|ref|ZP_03518368.1| transcription elongation factor regulatory protein [Rhizobium etli
IE4771]
Length = 160
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 59/100 (59%), Gaps = 11/100 (11%)
Query: 49 YQAAKELQNLNEGR------MAELENIITR---AEVIDISTMSGDRIAFGATVSLVEKNS 99
Y A ++++NE R + +L + R A+++ T S + +AFG TV+ ++
Sbjct: 50 YDATNTIEDVNERRRQAANPLRDLRYLAARLRTAQLMPYPT-SVNVVAFGNTVTF-RRDD 107
Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
G + Y+IVG+ EAD ++G +S SP+AR L+GK +GD +
Sbjct: 108 GRVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDAV 147
>gi|302530117|ref|ZP_07282459.1| transcription elongation factor greA [Streptomyces sp. AA4]
gi|302439012|gb|EFL10828.1| transcription elongation factor greA [Streptomyces sp. AA4]
Length = 163
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 6/151 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D+++ EL E RP I I+++R GDL EN Y AA+E Q E R+ L
Sbjct: 9 LTQDAYDRLKHELD-EMIENRPVIAARINDSREEGDLKENGGYHAAREEQGQAEARIRHL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124
+ ++ A+V + G A V V+ + D++ ++ +E + L S S
Sbjct: 68 QELLRNAKVGEAPDDDG--TAGPGKVLTVKYDGDDEEEKFLLATREEGAEGALDVYSPES 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ +AL+G + G+ P G KT ++ V
Sbjct: 126 PLGKALLGAKEGESREYELPNG-KTMKVTLV 155
>gi|260577699|ref|ZP_05845634.1| transcription elongation factor GreA [Corynebacterium jeikeium ATCC
43734]
gi|258604094|gb|EEW17336.1| transcription elongation factor GreA [Corynebacterium jeikeium ATCC
43734]
Length = 173
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 9/146 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++ EL + E RP + I+E R GDL EN Y AA+E Q E R+ L
Sbjct: 9 LTQESYDRLNTELTALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQEEARITYL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-----EADVQSGLVS 121
E ++ A + + SG + G+ + + D K ++G + D+++ S
Sbjct: 68 EELLDSATIGEAPQESGVAL-VGSVIHVYYDGDEDDKETFLIGTRGLESSNPDLET--YS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147
+P+ A++G ++G+ P G+
Sbjct: 125 TDAPLGAAIVGAKVGETREYQTPAGD 150
>gi|68536557|ref|YP_251262.1| transcription elongation factor GreA [Corynebacterium jeikeium
K411]
gi|68264156|emb|CAI37644.1| greA [Corynebacterium jeikeium K411]
Length = 173
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 71/146 (48%), Gaps = 9/146 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++ EL + E RP + I+E R GDL EN Y AA+E Q E R+ L
Sbjct: 9 LTQESYDRLNAELTALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQEEARITYL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-----EADVQSGLVS 121
E ++ A + + SG + G+ + + D K ++G + D+++ S
Sbjct: 68 EELLDSATIGEAPQESGVAL-VGSVIHVYYDGDEDDKETFLIGTRGLESSNPDLET--YS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147
+P+ A++G ++G+ P G+
Sbjct: 125 TDAPLGAAIVGAKVGETREYQTPAGD 150
>gi|89897729|ref|YP_521216.1| hypothetical protein DSY4983 [Desulfitobacterium hafniense Y51]
gi|219670878|ref|YP_002461313.1| GreA/GreB family elongation factor [Desulfitobacterium hafniense
DCB-2]
gi|89337177|dbj|BAE86772.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219541138|gb|ACL22877.1| GreA/GreB family elongation factor [Desulfitobacterium hafniense
DCB-2]
Length = 138
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 71/132 (53%), Gaps = 14/132 (10%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
+R R++K I++ R +G ++N +Y + +LE+ + A+V+ + G+
Sbjct: 11 DRERLLKLINKEREFGS-AKNKDY-------------LKDLEHELNGADVVPSEKIPGNA 56
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
I + + L + +G++ Y +V ++AD+ +SI +P+ A++G GDII PG
Sbjct: 57 ITMNSRILLKDLETGEETVYTLVYPEDADLLEDKISILAPVGTAILGYLEGDIIDWKVPG 116
Query: 146 GEKTYEILQVLW 157
G +++ ++L+
Sbjct: 117 GVVRFKVEKILY 128
>gi|21223338|ref|NP_629117.1| transcription elongation factor GreA [Streptomyces coelicolor
A3(2)]
gi|256785558|ref|ZP_05523989.1| transcription elongation factor GreA [Streptomyces lividans TK24]
gi|289769454|ref|ZP_06528832.1| transcription elongation factor greA [Streptomyces lividans TK24]
gi|25453008|sp|Q9ADK2|GREA_STRCO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|20520966|emb|CAD30950.1| putative transcription elongation factor [Streptomyces coelicolor
A3(2)]
gi|289699653|gb|EFD67082.1| transcription elongation factor greA [Streptomyces lividans TK24]
Length = 165
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++K+++EL + R I I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNKLKEELEYLTGPARTEISAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V + G +A G V++ + + D + + + A S SP
Sbjct: 71 TQLLESAKVGEAPAADG-VVAPGMVVTIAFDGDEDDTLTFLLASREYASSDIETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGG 146
+ ++G ++GD P G
Sbjct: 130 LGSGVLGHKVGDDAQYELPNG 150
>gi|254381990|ref|ZP_04997353.1| transcription elongation factor greA [Streptomyces sp. Mg1]
gi|194340898|gb|EDX21864.1| transcription elongation factor greA [Streptomyces sp. Mg1]
Length = 165
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D+++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQAAYDQLKAELDYLSGPARTEIATKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V + S +A G V + + + D + + + A + S SP
Sbjct: 71 TQLLENAKV-GTAPASDGVVAPGTLVKIAFDGDEDDTMEFLLASREYASSEFETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQV 155
+ ++ K++G+ P G+K T +IL V
Sbjct: 130 LGSGVLNKKIGEDAEYELPNGKKATVKILDV 160
>gi|302542896|ref|ZP_07295238.1| transcription elongation factor GreA [Streptomyces hygroscopicus
ATCC 53653]
gi|302460514|gb|EFL23607.1| transcription elongation factor GreA [Streptomyces himastatinicus
ATCC 53653]
Length = 165
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ EL + R I K I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYDQLKAELEYLSGPARIEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE---ADVQSGLVSIS 123
++ A+V + +G +A G V++ D ++ +E ADV++ S
Sbjct: 71 TQLLEHAKVGEAPADTG-VVAPGMVVTIAFDGDPDDTLTFLLASREYASADVET--YSPQ 127
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ + GK++G P G
Sbjct: 128 SPLGTGVNGKKVGQDAEYELPNG 150
>gi|302039171|ref|YP_003799493.1| transcription elongation factor, greA/greB family [Candidatus
Nitrospira defluvii]
gi|300607235|emb|CBK43568.1| Transcription elongation factor, greA/greB family [Candidatus
Nitrospira defluvii]
Length = 138
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 51/96 (53%)
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ LEN + RA V+D S + D + + V + + +G + Y +V +A +Q +S
Sbjct: 33 HLESLENELDRAHVVDPSAVPHDVVTMNSQVRIEDVETGAENVYTLVFPSDAGIQEKKLS 92
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I +PI AL+G G+ + + P G +T I +VL+
Sbjct: 93 ILAPIGTALLGARAGETVDWSVPAGVRTVRIKEVLY 128
>gi|237785171|ref|YP_002905876.1| transcription elongation factor GreA [Corynebacterium
kroppenstedtii DSM 44385]
gi|237758083|gb|ACR17333.1| Transcription elongation factor [Corynebacterium kroppenstedtii DSM
44385]
Length = 168
Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++++EL + RP I I+E R GDL EN Y AA+E Q E R+A L
Sbjct: 10 LTQEAYDRLKKELD-DLKANRPVIAAEINERREEGDLKENGGYHAAREQQGQEEARIAYL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI----VGDQEADVQSGLVSI 122
E ++ A + + + SG + + + D + + I V D+++ S
Sbjct: 69 EELLDSATIGEAPSQSGVALVGSVVHVYYDGDEDDTETFLIGTRGVHSSNTDLET--YST 126
Query: 123 SSPIARALIGKELGDIISVNAPGG 146
+P+ A++G + G+ P G
Sbjct: 127 DAPLGAAIVGAKEGETREYQTPNG 150
>gi|148557737|ref|YP_001265319.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
gi|148502927|gb|ABQ71181.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
Length = 157
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 65 ELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+L TR ++I + GD AFG V + +G +K IVGD EAD +GLVS S
Sbjct: 67 DLRYWTTRHATMEIQPPADGDEAAFGTRVRY--RLNGQEKAVAIVGDDEADPAAGLVSFS 124
Query: 124 SPIARALIGKELGDI 138
SP+ARALIG GD
Sbjct: 125 SPLARALIGAGEGDF 139
>gi|302558762|ref|ZP_07311104.1| transcription elongation factor GreA [Streptomyces griseoflavus
Tu4000]
gi|302476380|gb|EFL39473.1| transcription elongation factor GreA [Streptomyces griseoflavus
Tu4000]
Length = 165
Score = 54.3 bits (129), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 2/143 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNKLKVELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V + G +A G V++ + + D + + + A + S SP
Sbjct: 71 TQLLESAKVGEAPAADG-AVAPGMVVTIAFDGDEDDTLTFLLASREYASSEIETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ ++G ++G+ P G+K
Sbjct: 130 LGSGVMGHKVGEDAEYELPNGKK 152
>gi|319784595|ref|YP_004144071.1| transcription elongation factor GreA/GreB domain-containing protein
[Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317170483|gb|ADV14021.1| transcription elongation factor GreA/GreB domain-containing protein
[Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 157
Score = 53.9 bits (128), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
D + FG V+ +E + G K +++IVG+ EAD G +S SP+A AL GK++GD+ SVN
Sbjct: 88 DVVRFGMGVT-IESDDGKKVHWKIVGEDEADPTKGSISHVSPMAVALFGKKIGDLASVNG 146
Query: 144 PGGEKTYEILQV 155
K +EI+++
Sbjct: 147 ----KEWEIVKL 154
>gi|326388482|ref|ZP_08210077.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
DSM 19370]
gi|326207030|gb|EGD57852.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
DSM 19370]
Length = 164
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%), Gaps = 4/73 (5%)
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
G +AFG TV+ + +G + IVGD EAD +GL+S S+P++RA++ E+G+++ +
Sbjct: 91 GSHVAFGCTVTF--RMNGKTRTVTIVGDDEADPAAGLLSFSAPLSRAMMDAEVGELVDFS 148
Query: 143 APGGEKTYEILQV 155
G + EI+ +
Sbjct: 149 --GKPEAIEIVAI 159
>gi|227504093|ref|ZP_03934142.1| transcription elongation factor GreA [Corynebacterium striatum ATCC
6940]
gi|227199327|gb|EEI79375.1| transcription elongation factor GreA [Corynebacterium striatum ATCC
6940]
Length = 173
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
+ RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ ++ A + G
Sbjct: 26 DHRPVVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQISEVLANATTERTAIQEG- 84
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQSGLVSISSPIARALIGKELGDII 139
A G+ V + D K ++G + A D+++ S SP+ ALIG G+
Sbjct: 85 VAAIGSVVHVYYNGDKDDKETFLIGTRAAASDNKDLET--YSEQSPLGAALIGAHEGETR 142
Query: 140 SVNAPGG 146
AP G
Sbjct: 143 EYTAPNG 149
>gi|320334324|ref|YP_004171035.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
21211]
gi|319755613|gb|ADV67370.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
21211]
Length = 157
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 31/167 (18%)
Query: 1 MVDKIPVTSKGFDKIQQELR------------WRQQEERPRIIKAISEARAYGDLSENAE 48
M I VT+ G ++Q L R+Q E +EA + G L+E +
Sbjct: 1 MASPIQVTAAGLQRLQGSLDRERERAEEARRVLREQME-------ANEAESLG-LTEAQQ 52
Query: 49 YQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV 108
+ AA E R+ ELE +I AEV+ ST D +A G+T++L+ +G + ++V
Sbjct: 53 HLAAIE------ARIEELEGMIADAEVLPAST--SDAVALGSTLTLLNVENGQVRRVRLV 104
Query: 109 GDQEADVQS---GLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
EA L+S SP+ AL+G+ +G+ SV G Y++
Sbjct: 105 SPVEATGSVDGVALISTQSPVGAALLGRRVGETFSVRLGGRTAEYQV 151
>gi|291295876|ref|YP_003507274.1| GreA/GreB family elongation factor [Meiothermus ruber DSM 1279]
gi|290470835|gb|ADD28254.1| GreA/GreB family elongation factor [Meiothermus ruber DSM 1279]
Length = 157
Score = 53.9 bits (128), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 82/157 (52%), Gaps = 10/157 (6%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKA---ISEARAYGDLSENAEYQAAKELQN 57
M ++ +T G++++ EL ++ER R+ A + E D +++ + AK +
Sbjct: 1 MAREVKLTKSGYERLVAEL----EQERARLQDATRILQELMESSDDYDDSGLEDAKREKA 56
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
E R+ L + ++RA++++ ++ GA VSL K G+ Q+V EA V
Sbjct: 57 RIEARIDSLTDTLSRAQIMEEEGTKVSQVTLGAIVSLRSKE-GEIMEVQVVAPAEASVLE 115
Query: 118 GLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEI 152
+ IS SP+ RAL+G+++G + + P G+K ++I
Sbjct: 116 RPMKISDESPMGRALLGQQVGAKVLLETPKGKKEFKI 152
>gi|13476329|ref|NP_107899.1| transcription elongation factor greA [Mesorhizobium loti
MAFF303099]
gi|14027090|dbj|BAB54044.1| transcription elongation factor; GreA [Mesorhizobium loti
MAFF303099]
Length = 157
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 5/72 (6%)
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
D + FG V+L E + G K +++IVG+ EAD G +S SP+A AL GK++GD+ +VN
Sbjct: 88 DVVRFGMGVTL-EADDGKKVHWKIVGEDEADPTKGSISHVSPMAVALFGKKVGDVAAVNG 146
Query: 144 PGGEKTYEILQV 155
K +EI+++
Sbjct: 147 ----KEWEIVKL 154
>gi|312963140|ref|ZP_07777625.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
gi|311282651|gb|EFQ61247.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
Length = 165
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ A+V+ +T S D++ G+ V+ + +++ Q+VG+ +AD +GL++ SP+ RA
Sbjct: 78 VQSAQVVPPAT-SCDKVQIGSWVTFANEQD-EQQRVQLVGEDQADANAGLINWGSPLGRA 135
Query: 130 LIGKELGDIISVNAPGGEKTYEILQV 155
L+G ++GD + P G++ E+L+V
Sbjct: 136 LLGAQVGDEVLWKRPVGDQLIEVLRV 161
>gi|77461094|ref|YP_350601.1| GreA/GreB family elongation factor [Pseudomonas fluorescens Pf0-1]
gi|77385097|gb|ABA76610.1| putative transcription elongation factor [Pseudomonas fluorescens
Pf0-1]
Length = 164
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 59/101 (58%), Gaps = 9/101 (8%)
Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
R+A+LE + A+V T S D++ G+ V+ +++ G ++ Q+VG+ +AD
Sbjct: 63 RLADLERDLRYFNQRVASAQVAPAPT-SNDKVQIGSWVTYADEH-GTERRVQLVGEDQAD 120
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+GL++ +SP+ RAL+G L D + P G++ E++++
Sbjct: 121 AANGLINWASPLGRALLGARLNDEVLWQRPAGDQVIEVIRI 161
>gi|15828286|ref|NP_302549.1| transcription elongation factor GreA [Mycobacterium leprae TN]
gi|221230763|ref|YP_002504179.1| transcription elongation factor GreA [Mycobacterium leprae Br4923]
gi|6226624|sp|P46808|GREA_MYCLE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799564|sp|B8ZT53|GREA_MYCLB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|13093979|emb|CAC31909.1| transcription elongation factor G [Mycobacterium leprae]
gi|219933870|emb|CAR72491.1| transcription elongation factor G [Mycobacterium leprae Br4923]
Length = 164
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQESHDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNS--GDKKNYQIVGDQEADVQSG---LVS 121
++++ A+V + SG +A +V V N D + + I QE V G + S
Sbjct: 68 QDLLNIAKVGEAPKQSG--VALPGSVVKVYYNDDKSDTETFLIATRQEG-VNEGKLEVYS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
+SP+ ALI ++G+ S P G
Sbjct: 125 PNSPLGGALIDAKVGETRSYTVPNG 149
>gi|307324420|ref|ZP_07603628.1| GreA/GreB family elongation factor [Streptomyces violaceusniger Tu
4113]
gi|306890151|gb|EFN21129.1| GreA/GreB family elongation factor [Streptomyces violaceusniger Tu
4113]
Length = 165
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ EL + R I K I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYDQLKAELEYLSGPARVEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ +A+V + +G +A G V++ + + D + + + A S SP
Sbjct: 71 TQLLQQAKVGEAPADTG-VVAPGMVVTIAFDGDPDDTLTFLLASREYASANIETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGG 146
+ + GK++G P G
Sbjct: 130 LGSGVNGKKVGQDAEYELPNG 150
>gi|239979735|ref|ZP_04702259.1| transcription elongation factor GreA [Streptomyces albus J1074]
gi|291451596|ref|ZP_06590986.1| transcription elongation factor [Streptomyces albus J1074]
gi|291354545|gb|EFE81447.1| transcription elongation factor [Streptomyces albus J1074]
Length = 165
Score = 53.5 bits (127), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 6/145 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +++++ EL + R I K I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNQLKAELEYLSGPARTEISKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE---ADVQSGLVSIS 123
++ +A+V + G + G V++ D ++ +E AD+++ S
Sbjct: 71 TQLLAQAKVGEPPADDG-IVEPGMVVTIAFDGDPDDTLTFLMASREYASADIET--YSPQ 127
Query: 124 SPIARALIGKELGDIISVNAPGGEK 148
SP+ + GK++GD P G++
Sbjct: 128 SPLGTGVNGKKVGDTAEYELPNGKR 152
>gi|699276|gb|AAA63039.1| greA [Mycobacterium leprae]
Length = 202
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 73/145 (50%), Gaps = 9/145 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L
Sbjct: 47 LTQESHDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 105
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNS--GDKKNYQIVGDQEADVQSG---LVS 121
++++ A+V + SG +A +V V N D + + I QE V G + S
Sbjct: 106 QDLLNIAKVGEAPKQSG--VALPGSVVKVYYNDDKSDTETFLIATRQEG-VNEGKLEVYS 162
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
+SP+ ALI ++G+ S P G
Sbjct: 163 PNSPLGGALIDAKVGETRSYTVPNG 187
>gi|50955274|ref|YP_062562.1| transcription elongation factor [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951756|gb|AAT89457.1| transcription elongation factor [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 163
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D++ EL R I K I AR GDL EN Y AAK+ Q E R+ +L
Sbjct: 10 LTQDAYDRLAAELEELSVNGRAEIAKRIEAAREEGDLKENGGYHAAKDEQGKIEARIVQL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS--S 124
++ R+ + + S + G V+ +GD+ + ++G++E + L S S
Sbjct: 70 TALL-RSATVGAAPESHGIVEPGTVVTAT--IAGDESAF-LIGNREIATGTELPVYSEQS 125
Query: 125 PIARALIGKELGDIISVNAPGGEK 148
P+ A++G ++GD AP G +
Sbjct: 126 PLGAAILGLKIGDTTEYTAPNGRQ 149
>gi|307140091|ref|ZP_07499447.1| transcription elongation factor GreB [Escherichia coli H736]
Length = 93
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P VT +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAF 88
+ L + +++D S ++ F
Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFF 87
>gi|227501557|ref|ZP_03931606.1| transcription elongation factor GreA [Corynebacterium accolens ATCC
49725]
gi|306835715|ref|ZP_07468721.1| transcription elongation factor GreA [Corynebacterium accolens ATCC
49726]
gi|227077582|gb|EEI15545.1| transcription elongation factor GreA [Corynebacterium accolens ATCC
49725]
gi|304568433|gb|EFM43992.1| transcription elongation factor GreA [Corynebacterium accolens ATCC
49726]
Length = 173
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
+ RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ ++ + + TM
Sbjct: 26 DHRPEVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQISELLANS-TTERGTMQEG 84
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG---LVSISSPIARALIGKELGDIISV 141
G+ V + + D K ++G + A + S SP+ A+IG + G+
Sbjct: 85 VAYTGSVVHVYYNGNKDDKETFLIGTRAAATDNKDLETYSEQSPLGAAIIGAQEGETREY 144
Query: 142 NAPGG 146
+AP G
Sbjct: 145 SAPNG 149
>gi|262369483|ref|ZP_06062811.1| transcription elongation factor GreB [Acinetobacter johnsonii
SH046]
gi|262315551|gb|EEY96590.1| transcription elongation factor GreB [Acinetobacter johnsonii
SH046]
Length = 100
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSPIARALIGK 133
+ID S +I FGA V +E + G++K +IVG D+ D +SI SP+ARAL+ K
Sbjct: 10 IIDFSEEQAGKIYFGAWVE-IENDEGEQKTLRIVGVDEIYDHHPQHISIDSPMARALLSK 68
Query: 134 ELGDIISVNAPGGEKTYEI 152
++ D I V P G+K + +
Sbjct: 69 QVDDEIEVLTPTGKKHWYV 87
>gi|325286071|ref|YP_004261861.1| GreA/GreB family elongation factor [Cellulophaga lytica DSM 7489]
gi|324321525|gb|ADY28990.1| GreA/GreB family elongation factor [Cellulophaga lytica DSM 7489]
Length = 139
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 10/125 (8%)
Query: 40 YGDLS-ENAEYQAAKELQNLN--------EGRMAELENIITRAEVIDISTMSGDRIAFGA 90
YG L E EY K+L NL+ + +A+L N + A V D M D I F +
Sbjct: 3 YGGLIIEKKEYVLLKKLMNLSGYHKDATYKKSIAKLNNELKTAAVKDEKDMPTDVIRFNS 62
Query: 91 TVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY 150
V+ V + G +K++Q+V ++D+++ +SI +P+ A+IG GD + P GEKT
Sbjct: 63 IVT-VTADEGWQKSFQLVKPSDSDLKNKKLSILTPMGTAVIGYAKGDKLLWEFPAGEKTL 121
Query: 151 EILQV 155
+ V
Sbjct: 122 TVNNV 126
>gi|298291344|ref|YP_003693283.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
gi|296927855|gb|ADH88664.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
Length = 166
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 14/106 (13%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
QA++EL+ + R A E + AE G+ I FG V+L E G ++ ++IVG
Sbjct: 60 QASRELRYWS-SRRANAEPVDPPAE--------GEAITFGMQVTL-EAEDGAQRRFRIVG 109
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ EA+ + G ++ SP+ARAL+GK +GD +S+ P G T EI+ V
Sbjct: 110 EDEAEPREGRIAWISPVARALMGKWIGDEVSL--PVG--TMEIVAV 151
>gi|300789906|ref|YP_003770197.1| transcription elongation factor GreA [Amycolatopsis mediterranei
U32]
gi|299799420|gb|ADJ49795.1| transcription elongation factor GreA [Amycolatopsis mediterranei
U32]
Length = 167
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D+++ EL E RP I I+++R GDL EN Y AA+E Q E R+ L
Sbjct: 12 LTQDAYDRLKHELD-EMIENRPVIAARINDSREEGDLKENGGYHAAREEQGQAEARIRHL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ A+V + G E + D+K ++ A+ + + S SP+
Sbjct: 71 QELLRSAKVGEKPANDGTAGPGKVLTVRYEGDDEDEKFLLATREEGAEGELDVYSPESPL 130
Query: 127 ARALIGKELGDIISVNAPGG 146
+AL+G + G+ P G
Sbjct: 131 GKALLGAKEGESREYELPNG 150
>gi|111022813|ref|YP_705785.1| transcription elongation factor GreA [Rhodococcus jostii RHA1]
gi|226365321|ref|YP_002783104.1| transcription elongation factor GreA [Rhodococcus opacus B4]
gi|110822343|gb|ABG97627.1| transcription elongation factor [Rhodococcus jostii RHA1]
gi|226243811|dbj|BAH54159.1| transcription elongation factor GreA [Rhodococcus opacus B4]
Length = 164
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL + RP I I+E R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQESHDRLKSELD-QLIANRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSISS 124
+ ++ A+V + T SG + + + D + + I +E D + + S +S
Sbjct: 68 QELLNSAKVGEAPTQSGVALPGSVVKVYYDGDEKDTETFLIATREEGARDNKLEVYSPNS 127
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ AL+ ++G+ P G
Sbjct: 128 PLGGALLEAKVGETREYTLPNG 149
>gi|295690226|ref|YP_003593919.1| GreA/Greb family elongation factor [Caulobacter segnis ATCC 21756]
gi|295432129|gb|ADG11301.1| GreA/GreB family elongation factor [Caulobacter segnis ATCC 21756]
Length = 160
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 9/65 (13%)
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
GDR+ F E+ G + ++IVG+ EAD G VS +PIARAL+GK +G+ +
Sbjct: 98 GDRVTF-------EREDGRVQTFRIVGEDEADPAKGSVSYIAPIARALLGKAVGE--TAP 148
Query: 143 APGGE 147
APGGE
Sbjct: 149 APGGE 153
>gi|77462558|ref|YP_352062.1| putative transcription elongation factor [Rhodobacter sphaeroides
2.4.1]
gi|126461492|ref|YP_001042606.1| GreA/GreB family elongation factor [Rhodobacter sphaeroides ATCC
17029]
gi|77386976|gb|ABA78161.1| putative transcription elongation factor [Rhodobacter sphaeroides
2.4.1]
gi|126103156|gb|ABN75834.1| GreA/GreB family elongation factor [Rhodobacter sphaeroides ATCC
17029]
Length = 164
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE I A ++D + D +AFG V+ VE +G + ++I G+ EA + ++ +P
Sbjct: 72 LEARIASAILVDPAAQPLDEVAFGLAVT-VEDEAGRRTVWEITGEDEAQATARRIAPQAP 130
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+G LG+ + P GE T +
Sbjct: 131 LARALMGARLGEKVVWTRPAGEVTLTV 157
>gi|300934084|ref|ZP_07149340.1| transcription elongation factor GreA [Corynebacterium resistens DSM
45100]
Length = 173
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 9/146 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D++ EL + E RP + I+E R GDL EN Y AA+E Q E R+A L
Sbjct: 9 LTQESYDRLNAELTALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQEEARIAYL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-----EADVQSGLVS 121
E ++ A + + SG + G+ + + + D K ++G + D+++ S
Sbjct: 68 EELLDNATIGEAPQESGVAL-VGSVIHVYYDDDEDDKETFLIGTRGLESSNPDLET--YS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147
+P+ A++G ++G+ P G+
Sbjct: 125 TDAPLGAAIVGAKVGESREYQTPNGD 150
>gi|70732647|ref|YP_262410.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5]
gi|68346946|gb|AAY94552.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5]
Length = 197
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 58/101 (57%), Gaps = 9/101 (8%)
Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
RMAELE + A+V+ + S D++ G+ V+ ++ +++ Q+VG+ +AD
Sbjct: 96 RMAELERDLRYFTQRLHSAQVVTTAN-STDKVQIGSRVTFADEQD-RQQSVQLVGEDQAD 153
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
GL++ +SP+ RAL+G + GD + P G + EI+++
Sbjct: 154 AAKGLINWASPLGRALLGAQPGDEVLWQRPAGNQLIEIIRI 194
>gi|312602260|ref|YP_004022105.1| regulator of nucleoside diphosphate kinase [Burkholderia
rhizoxinica HKI 454]
gi|312169574|emb|CBW76586.1| Regulator of nucleoside diphosphate kinase [Burkholderia
rhizoxinica HKI 454]
Length = 195
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 12/140 (8%)
Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDI 78
LRWR + + + + D+S + A Q+ G L+ ++ RA V++
Sbjct: 57 LRWRNKMKTCYLTET--------DVSRLERHAAQASPQS---GYQTMLDALLERAAVVEA 105
Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
+ + + +TV+L +SG++ + +V AD G +++ SP+ AL+G GD
Sbjct: 106 TDIDPSVVTMNSTVTLSNPSSGERMTWTVVYPPNADFSQGRLNVFSPVGLALLGATPGDE 165
Query: 139 ISVNAP-GGEKTYEILQVLW 157
+ V P G +T ++ Q+++
Sbjct: 166 LRVTPPSGAPQTLKVEQIVF 185
>gi|221638413|ref|YP_002524675.1| transcription elongation factor [Rhodobacter sphaeroides KD131]
gi|221159194|gb|ACM00174.1| Transcription elongation factor [Rhodobacter sphaeroides KD131]
Length = 164
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE I A ++D + D +AFG V+ VE +G + ++I G+ EA + ++ +P
Sbjct: 72 LEARIASAILVDPAAQPLDEVAFGLAVT-VEDEAGRRTVWEITGEDEAQATARRIAPQAP 130
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ARAL+G LG+ + P GE T +
Sbjct: 131 LARALMGARLGEKVVWTRPAGEVTLTV 157
>gi|54026800|ref|YP_121042.1| transcription elongation factor GreA [Nocardia farcinica IFM 10152]
gi|54018308|dbj|BAD59678.1| putative transcription elongation factor [Nocardia farcinica IFM
10152]
Length = 164
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQESHDRLKSELDALIAN-RPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS--S 124
+ ++ A+V T SG + + + D + + I +E S L + S S
Sbjct: 68 QELLNNAKVGVAPTKSGVALPGSVVKVYYDGDENDTETFLIATREEGLGHSDLETYSPNS 127
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ ALI ++G+ P G
Sbjct: 128 PLGGALIDAKVGETREYTLPNG 149
>gi|46206102|ref|ZP_00047698.2| COG0782: Transcription elongation factor [Magnetospirillum
magnetotacticum MS-1]
Length = 74
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
D + FGATV+++ ++ ++ ++IVG+ EAD +G +S +P+ARAL GK +GD ++VN
Sbjct: 7 DVVRFGATVTVLREDD-TRQIFRIVGEDEADPAAGSISYVAPLARALTGKGVGDTVTVNG 65
Query: 144 PGGEKTYEILQV 155
+EI ++
Sbjct: 66 ----HDFEIAEI 73
>gi|297192437|ref|ZP_06909835.1| transcription elongation factor [Streptomyces pristinaespiralis
ATCC 25486]
gi|197717974|gb|EDY61882.1| transcription elongation factor [Streptomyces pristinaespiralis
ATCC 25486]
Length = 165
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 6/145 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +++++ EL + R I K I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNQLKAELEYLSGPARTEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE---ADVQSGLVSIS 123
++ A+V + G + G V++ D ++ +E AD+++ S
Sbjct: 71 TQLLDNAKVGEAPADDG-VVEPGMVVTIAFDGDEDDTLTFLMASREYASADIET--YSPQ 127
Query: 124 SPIARALIGKELGDIISVNAPGGEK 148
SP+ + GK++GD P G+K
Sbjct: 128 SPLGVGVNGKKVGDDAEYELPNGKK 152
>gi|90420487|ref|ZP_01228394.1| possible transcription elongation factor, GreA/GreB family
[Aurantimonas manganoxydans SI85-9A1]
gi|90335215|gb|EAS48968.1| possible transcription elongation factor, GreA/GreB family
[Aurantimonas manganoxydans SI85-9A1]
Length = 158
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
+G FG+ VS +E+ G + + IVG EAD +GL+S SP+AR+LIG+ +GDI+
Sbjct: 85 TGGTAQFGSVVS-IEREDGRTQQFTIVGIDEADPSAGLISYLSPLARSLIGRTVGDIV 141
>gi|170695928|ref|ZP_02887067.1| GreA/GreB family elongation factor [Burkholderia graminis C4D1M]
gi|170139112|gb|EDT07301.1| GreA/GreB family elongation factor [Burkholderia graminis C4D1M]
Length = 139
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L++++ RA ++D + + + + +LV+++SG++ + +V +AD G +++ SP
Sbjct: 37 LDDVLERAVIVDSREIPANVVTMNSQATLVDESSGEQMTWTVVYPPDADFAHGRLNVFSP 96
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+ AL+G + G+ I P G EK ++ ++L+
Sbjct: 97 VGLALLGAKRGEHIHFMPPSGAEKVLKLEKILY 129
>gi|167589792|ref|ZP_02382180.1| GreA/GreB family elongation factor [Burkholderia ubonensis Bu]
Length = 132
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L+ ++ RA+++ + + + + ++L+++ + +K + IV +EA+++ G +++
Sbjct: 28 AMLDALLERADIVQPDAIKANVVTMNSQITLLDETNHEKTTWTIVYPEEANLEQGRLNVF 87
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
SP+ AL+G + G ++ V P G EK ++ ++++
Sbjct: 88 SPVGMALLGTQRGQLVKVMQPSGTEKLMKVAEIVF 122
>gi|328884670|emb|CCA57909.1| Transcription elongation factor GreA [Streptomyces venezuelae ATCC
10712]
Length = 165
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 3/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNKLKDELEYLSGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V + G + G V++ + + D + + + A S SP
Sbjct: 71 TQLLQHAKVGEAPADDG-VVEPGMVVTIAFDGDENDTMTFLLASREYASGDIETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEIL 153
+ + GK+ GD P G+K T +IL
Sbjct: 130 LGVGVNGKKAGDDAQYELPNGKKATVKIL 158
>gi|115523623|ref|YP_780534.1| transcription elongation factor regulatory protein
[Rhodopseudomonas palustris BisA53]
gi|115517570|gb|ABJ05554.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
BisA53]
Length = 160
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
S + +AFG TV+ + G + Y+IVG+ EAD ++G +S SP+AR L+ K +GD++
Sbjct: 91 STEAVAFGHTVTF-RRADGRVQTYRIVGEDEADPKAGSISFVSPVARLLMRKAVGDVVG- 148
Query: 142 NAPGGEKTYEILQV 155
G+ EI+ +
Sbjct: 149 ---AGDHELEIIAI 159
>gi|331644106|ref|ZP_08345235.1| transcription elongation factor GreB (Transcript cleavage
factorgreB) [Escherichia coli H736]
gi|331036400|gb|EGI08626.1| transcription elongation factor GreB (Transcript cleavage
factorgreB) [Escherichia coli H736]
Length = 114
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
FGA V +E + G ++IVG E + +SI SP+ARAL+ KE+GD+ VN P GE
Sbjct: 43 FGAWVE-IENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGE 101
Query: 148 KTYEI 152
++ +
Sbjct: 102 ASWYV 106
>gi|302865433|ref|YP_003834070.1| transcription elongation factor GreA [Micromonospora aurantiaca
ATCC 27029]
gi|315501981|ref|YP_004080868.1| transcription elongation factor grea [Micromonospora sp. L5]
gi|302568292|gb|ADL44494.1| transcription elongation factor GreA [Micromonospora aurantiaca
ATCC 27029]
gi|315408600|gb|ADU06717.1| transcription elongation factor GreA [Micromonospora sp. L5]
Length = 166
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+ L
Sbjct: 13 LSQDAYDRLQAELD-ELIANRPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRILYL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS--S 124
+ ++ A+V + D ++ G V + + D ++G +E + L S S
Sbjct: 72 KELLRTAKVGEAPDT--DAVSPGMVVKIYFDDDADDSETFLLGSREIASTTDLTVYSPES 129
Query: 125 PIARALIGKELGDIISVNAPGG 146
+ +A++G + G + AP G
Sbjct: 130 ALGKAILGGKAGQTCTYTAPSG 151
>gi|170723669|ref|YP_001751357.1| GreA/GreB family elongation factor [Pseudomonas putida W619]
gi|169761672|gb|ACA74988.1| GreA/GreB family elongation factor [Pseudomonas putida W619]
Length = 165
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ A+V+ +T S ++ G+ V ++ G ++ Q+VG+ EAD GL++ SP+ RA
Sbjct: 78 VQSAQVVPAAT-SNSKVQIGSRVRFADEQ-GQEQTVQLVGEDEADASRGLINWGSPLGRA 135
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156
L+G GD ++ P G++ E++ ++
Sbjct: 136 LLGAGPGDEVTWRRPAGDQVIEVMDIV 162
>gi|229592705|ref|YP_002874824.1| putative transcription elongation factor [Pseudomonas fluorescens
SBW25]
gi|229364571|emb|CAY52453.1| putative transcription elongation factor [Pseudomonas fluorescens
SBW25]
Length = 162
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ A+V+ +T S D++ G+ V+ + +++ Q+VG+ +AD +GL++ SP+ RA
Sbjct: 75 LQSAQVVAPAT-STDKVQIGSWVTFANEQD-EQQRIQLVGEDQADANAGLINWGSPLGRA 132
Query: 130 LIGKELGDIISVNAPGGEKTYEILQV 155
L+G ++GD + P G++ E+L++
Sbjct: 133 LLGAQVGDEVLWKRPVGDQLIEVLRI 158
>gi|29829843|ref|NP_824477.1| transcription elongation factor GreA [Streptomyces avermitilis
MA-4680]
gi|81719423|sp|Q82I57|GREA_STRAW RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|29606952|dbj|BAC71012.1| putative transcription elongation factor [Streptomyces avermitilis
MA-4680]
Length = 165
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNQLKAELEYLSGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V + G +A G V++ + + D ++ + + A S SP
Sbjct: 71 TQLLENAKVGEAPAADG-AVAPGMVVTIAFDGDEDDTLDFLLASREYASADIETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGG 146
+ + GK++G+ P G
Sbjct: 130 LGSGVNGKKVGEDAQYELPNG 150
>gi|330811840|ref|YP_004356302.1| GreA-GreB family transcriptional regulator [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327379948|gb|AEA71298.1| Putative transcription factor, GreA-GreB family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 163
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
++ S D++ G V+ V++ +++ Q+VG+ +AD SGL++ SP+ RAL+G ++GD
Sbjct: 84 VAPTSSDQVRIGHWVTFVDEQDHEQR-VQLVGEDQADAASGLINWGSPLGRALLGAKVGD 142
Query: 138 IISVNAPGGEKTYEILQV 155
++ P G E++ +
Sbjct: 143 EVTWERPLGNLAIEVVAI 160
>gi|91774873|ref|YP_544629.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
gi|91708860|gb|ABE48788.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
Length = 138
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 52/93 (55%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A LE+ + R+E + + D + + V L ++ +G + + +V +AD + +S+
Sbjct: 34 LARLEDELARSEEVPSEQVGADVVTMNSRVLLRDEANGHEMSCTLVFPSDADASANRISV 93
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+P+ A++G +GD+I PGG + Y IL++
Sbjct: 94 VAPLGTAILGYRVGDVIDWAMPGGVRQYRILKI 126
>gi|290957897|ref|YP_003489079.1| transcription elongation factor [Streptomyces scabiei 87.22]
gi|260647423|emb|CBG70528.1| putative transcription elongation factor [Streptomyces scabiei
87.22]
Length = 166
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNQLRAELDYLSGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V + + +A G V++ + + D + + + A S SP
Sbjct: 71 TQLLENAKVGEAPASADGAVAPGMVVTIAFDGDEDDTVTFLLASREYASSDIETYSPQSP 130
Query: 126 IARALIGKELGDIISVNAPGGE 147
+ + GK++G P G+
Sbjct: 131 LGSGVTGKKVGQDAQYELPNGK 152
>gi|94498026|ref|ZP_01304589.1| nucleoside diphosphate kinase regulator [Sphingomonas sp. SKA58]
gi|94422461|gb|EAT07499.1| nucleoside diphosphate kinase regulator [Sphingomonas sp. SKA58]
Length = 156
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
GD +AFG V+ + SG K+ +VGD EAD G +S SSP+ARA++ E+G+ +
Sbjct: 82 GDVVAFGTRVTY--RQSGQDKSVVLVGDDEADPHDGRISFSSPVARAMMDAEVGEKV 136
>gi|89891757|ref|ZP_01203260.1| hypothetical protein BBFL7_01019 [Flavobacteria bacterium BBFL7]
gi|89516092|gb|EAS18756.1| hypothetical protein BBFL7_01019 [Flavobacteria bacterium BBFL7]
Length = 139
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 48 EYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107
+++ K LQ L + EL+N A+++D M D I F + ++ V+ N G K QI
Sbjct: 28 DFETQKSLQRLTD----ELKN----AQILDELDMPQDVIRFNSKIT-VKSNKGWSKKIQI 78
Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
V D+ +SI +P+A AL+G DII N P G + EI++V
Sbjct: 79 VIPALKDLDLDRISILTPLASALLGYAQSDIIQWNLPSGLQELEIVEV 126
>gi|323526690|ref|YP_004228843.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1001]
gi|323383692|gb|ADX55783.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1001]
Length = 139
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L++++ RA ++D + + + + +LV++ SG++ + +V +AD G +++ SP
Sbjct: 37 LDDVLERAVIVDSRDIPANVVTMNSQATLVDETSGEEMTWTVVYPPDADFTHGRLNVFSP 96
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ AL+G + G+ I P G EK ++ ++L+
Sbjct: 97 VGLALLGAKRGEQIRFMPPSGDEKVLKLAKILY 129
>gi|16126441|ref|NP_421005.1| transcription elongation factor regulatory protein [Caulobacter
crescentus CB15]
gi|221235222|ref|YP_002517658.1| transcription elongation factor regulatory protein [Caulobacter
crescentus NA1000]
gi|13423705|gb|AAK24173.1| transcription elongation factor GreA/GreB, family [Caulobacter
crescentus CB15]
gi|220964394|gb|ACL95750.1| transcription elongation factor greB [Caulobacter crescentus
NA1000]
Length = 160
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 41/65 (63%), Gaps = 9/65 (13%)
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
GDR+ F E+ G + ++IVG+ +AD G +S +PIARAL+GK +G++ +
Sbjct: 98 GDRVTF-------EREDGRVQTFRIVGEDQADPAKGTISYIAPIARALLGKAVGEVSA-- 148
Query: 143 APGGE 147
APGGE
Sbjct: 149 APGGE 153
>gi|53717174|ref|YP_105968.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei ATCC 23344]
gi|67643290|ref|ZP_00442037.1| transcription elongation factor [Burkholderia mallei GB8 horse 4]
gi|76817365|ref|YP_337627.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1710b]
gi|121598026|ref|YP_989947.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei SAVP1]
gi|124381514|ref|YP_001024430.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei NCTC 10229]
gi|126445041|ref|YP_001062285.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 668]
gi|126447434|ref|YP_001078147.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei NCTC 10247]
gi|167000163|ref|ZP_02265983.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei PRL-20]
gi|167819370|ref|ZP_02451050.1| putative nucleoside diphosphate kinase regulator [Burkholderia
pseudomallei 91]
gi|167827743|ref|ZP_02459214.1| putative nucleoside diphosphate kinase regulator [Burkholderia
pseudomallei 9]
gi|167897815|ref|ZP_02485217.1| putative nucleoside diphosphate kinase regulator [Burkholderia
pseudomallei 7894]
gi|167922382|ref|ZP_02509473.1| putative nucleoside diphosphate kinase regulator [Burkholderia
pseudomallei BCC215]
gi|226197683|ref|ZP_03793258.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei Pakistan 9]
gi|254174295|ref|ZP_04880957.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei ATCC 10399]
gi|254183333|ref|ZP_04889925.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1655]
gi|254189966|ref|ZP_04896475.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei Pasteur 52237]
gi|254193144|ref|ZP_04899579.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei S13]
gi|254200813|ref|ZP_04907178.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei FMH]
gi|254204783|ref|ZP_04911136.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei JHU]
gi|254265246|ref|ZP_04956111.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1710a]
gi|254357032|ref|ZP_04973307.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei 2002721280]
gi|52423144|gb|AAU46714.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei ATCC 23344]
gi|76581838|gb|ABA51312.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1710b]
gi|121225824|gb|ABM49355.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei SAVP1]
gi|124289534|gb|ABM98803.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei NCTC 10229]
gi|126224532|gb|ABN88037.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 668]
gi|126240288|gb|ABO03400.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei NCTC 10247]
gi|147748425|gb|EDK55500.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei FMH]
gi|147754369|gb|EDK61433.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei JHU]
gi|148026059|gb|EDK84182.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei 2002721280]
gi|157937643|gb|EDO93313.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei Pasteur 52237]
gi|160695341|gb|EDP85311.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei ATCC 10399]
gi|169649898|gb|EDS82591.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei S13]
gi|184213866|gb|EDU10909.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1655]
gi|225930292|gb|EEH26304.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei Pakistan 9]
gi|238524601|gb|EEP88033.1| transcription elongation factor [Burkholderia mallei GB8 horse 4]
gi|243063816|gb|EES46002.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei PRL-20]
gi|254216248|gb|EET05633.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1710a]
Length = 132
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ RA++++ + + + + + + L+++ +G + + IV A+ + G +++ SP
Sbjct: 30 LDTLLERADIVEPNKIQANVVTMNSQIKLLDETAGQDRAWTIVYPDAANFEQGRLNVFSP 89
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ AL+G G+ + V PGG + T +I+++++
Sbjct: 90 VGMALLGSRCGERVKVTLPGGADATLKIVEIVY 122
>gi|15806968|ref|NP_295693.1| transcription elongation factor [Deinococcus radiodurans R1]
gi|6459759|gb|AAF11523.1|AE002035_6 transcription elongation factor [Deinococcus radiodurans R1]
Length = 161
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 9/150 (6%)
Query: 4 KIPVTSKGFDKIQQELRWRQQE--ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ +T +GF+++++ L Q E RI++ E A D + A +E N+ E
Sbjct: 6 QVRLTREGFERLEKALEQEQNRLNEATRILQEQMETSA--DNEDTGLEDAKREKMNI-EA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--- 118
R+ ELE+ + RA +I+ +G R+ GA V L + S Q+V EA + G
Sbjct: 63 RIDELEDTLARATLIE-DQENGGRVELGAIVQLSNETSKKDMKVQVVSAAEAAMVGGSIT 121
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK 148
+S SP+ R L+G++ G+ V GG++
Sbjct: 122 RISEESPVGRELMGRKKGESFVVTLEGGKQ 151
>gi|256389881|ref|YP_003111445.1| transcription elongation factor GreA [Catenulispora acidiphila DSM
44928]
gi|256356107|gb|ACU69604.1| transcription elongation factor GreA [Catenulispora acidiphila DSM
44928]
Length = 164
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 3/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D++ EL+ R I + I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQDAYDRLTAELQQLSGPGRVEIAQKIEAAREEGDLRENGGYHAAKEEQGKIELRIRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLVSISSP 125
++ A+V D S SG + GA V++ D ++G +E A + S SP
Sbjct: 71 TQLLEHAKVGD-SVESGVAVP-GAVVTIAFDGDEDDTLTFLLGSREDAADNMEVYSAQSP 128
Query: 126 IARALIGKELGDIISVNAPGGE 147
+ A+ GK++G+ P G+
Sbjct: 129 LGGAINGKKIGEQAEYELPNGK 150
>gi|53721904|ref|YP_110889.1| transcription elongation factor [Burkholderia pseudomallei K96243]
gi|52212318|emb|CAH38342.1| putative transcription elongation factor [Burkholderia pseudomallei
K96243]
Length = 136
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ RA++++ + + + + + + L+++ +G + + IV A+ + G +++ SP
Sbjct: 34 LDTLLERADIVEPNKIQANVVTMNSQIKLLDETAGQDRAWTIVYPDAANFEQGRLNVFSP 93
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ AL+G G+ + V PGG + T +I+++++
Sbjct: 94 VGMALLGSRCGERVKVTLPGGADATLKIVEIVY 126
>gi|307729138|ref|YP_003906362.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
gi|307583673|gb|ADN57071.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
Length = 139
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L++++ RA ++D + + + + +LV++ SG+ + +V EAD G +++ SP
Sbjct: 37 LDDVLERAVIVDSREIPANVLTMNSQATLVDEASGEHMTWTVVYPPEADFAHGRLNVFSP 96
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ AL+G + G+ I P G EK ++ ++L+
Sbjct: 97 VGLALLGAKRGEQIRFMPPSGDEKVLKLEKILY 129
>gi|260462428|ref|ZP_05810636.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum
WSM2075]
gi|259031922|gb|EEW33190.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum
WSM2075]
Length = 157
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
D + FG V+L E + G K +++IVG+ EA+ G +S SP+A AL GK++G++++VN
Sbjct: 88 DLVRFGMGVTL-EGDDGRKVHWKIVGEDEANPSKGSISHVSPMAVALFGKKVGEVVTVNG 146
Query: 144 PGGEKTYEILQV 155
K +EI+++
Sbjct: 147 ----KEWEIVKL 154
>gi|300023335|ref|YP_003755946.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525156|gb|ADJ23625.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans
ATCC 51888]
Length = 152
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 64/117 (54%), Gaps = 19/117 (16%)
Query: 53 KELQ-NLNEGRMAELENIITRAE-----------VIDISTMSGDR--IAFGATVSLVEKN 98
K LQ +LN R ++ N I RA ++ + D +AFG+ V+L E++
Sbjct: 40 KRLQEDLNAARESDDRNAIARASHDLRYWSQRLATAELQPPASDASVVAFGSRVTL-ERD 98
Query: 99 SGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
G + ++IVG+ EAD G +S SP+A+AL+GK GD +V A GE EI+++
Sbjct: 99 DGRMQKFRIVGEDEADPAKGSISYVSPLAQALLGKAAGD--TVKAGSGEA--EIIKI 151
>gi|300858139|ref|YP_003783122.1| transcription elongation factor [Corynebacterium pseudotuberculosis
FRC41]
gi|300685593|gb|ADK28515.1| Transcription elongation factor [Corynebacterium pseudotuberculosis
FRC41]
gi|302205860|gb|ADL10202.1| transcription elongation factor GreA [Corynebacterium
pseudotuberculosis C231]
gi|302330418|gb|ADL20612.1| transcription elongation factor GreA [Corynebacterium
pseudotuberculosis 1002]
gi|308276095|gb|ADO25994.1| transcription elongation factor GreA [Corynebacterium
pseudotuberculosis I19]
Length = 173
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ I+ + + + G
Sbjct: 27 HRPEVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQISEILANSTTERVGIVEG-- 84
Query: 86 IAFGATVSLVEKNSGDKKNYQ--IVGDQEA-----DVQSGLVSISSPIARALIGKELGDI 138
+A +V V N GDK + + ++G + A D+++ S SP+ A+IG + G+
Sbjct: 85 VAHIGSVVHVYYN-GDKNDKETFLIGTRAAASDNKDLET--FSEQSPLGAAVIGAKEGET 141
Query: 139 ISVNAPGG 146
AP G
Sbjct: 142 REYTAPNG 149
>gi|302381565|ref|YP_003817388.1| GreA/GreB family elongation factor [Brevundimonas subvibrioides
ATCC 15264]
gi|302192193|gb|ADK99764.1| GreA/GreB family elongation factor [Brevundimonas subvibrioides
ATCC 15264]
Length = 158
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
RA + T + R+ FG +V+ +E+ G + ++IVG+ EAD +G VS SP+ARAL
Sbjct: 79 RANAQVVETAAEGRVRFGGSVT-IEREDGRTQTWRIVGEDEADPANGSVSHVSPLARALT 137
Query: 132 GKELGD 137
GK +GD
Sbjct: 138 GKGVGD 143
>gi|254785677|ref|YP_003073106.1| transcription elongation factor GreA [Teredinibacter turnerae
T7901]
gi|237684826|gb|ACR12090.1| transcription elongation factor GreA [Teredinibacter turnerae
T7901]
Length = 126
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
L +L + AEL + A V+D + G R+ FG+ V++ + +++++QIV E+
Sbjct: 21 LSSLPDTDAAELRTRLASATVVDNDDIMGGRVQFGSLVTVFSIDEEEEQSFQIVSSDESL 80
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155
GL+ SP+A+AL G G+++ V G YE+ +
Sbjct: 81 SGRGLLDQRSPLAQALFGAREGEVVRVLLQNGSNCDYEVTHI 122
>gi|146275634|ref|YP_001165794.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
gi|145322325|gb|ABP64268.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
Length = 151
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
A+V+D D +AFG+TV+ V +G + IVG EAD +GL++ S+P+ARAL G
Sbjct: 74 AQVMD--PPQADVVAFGSTVTFV--LNGQNRRITIVGHDEADPTAGLIAFSAPLARALNG 129
Query: 133 KELGDIISVNAPGGEKTYEILQV 155
E G+ +V+ G E+L +
Sbjct: 130 AEAGE--TVDFGGRADAIEVLSI 150
>gi|110639992|ref|YP_680202.1| transcription elongation factor [Cytophaga hutchinsonii ATCC 33406]
gi|110282673|gb|ABG60859.1| transcription elongation factor [Cytophaga hutchinsonii ATCC 33406]
Length = 149
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAF 88
RI + I+EA+ + +S +A + L G++ E E I + +
Sbjct: 26 RIQQCINEAKQFKSISV---VEANSLMNELKLGKLVEPEEI------------PNNVVTM 70
Query: 89 GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V++V +S + +Q+V +ADV++ +SI SPIA ALIG ++GD I P G
Sbjct: 71 HSIVTIVFMDSNKRVEFQLVYPDKADVKNNKISIFSPIATALIGYQIGDEIEWCVPAG 128
>gi|104780044|ref|YP_606542.1| transcription elongation factor [Pseudomonas entomophila L48]
gi|95109031|emb|CAK13727.1| putative transcription elongation factor [Pseudomonas entomophila
L48]
Length = 165
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ A+V+ +T S ++ G+ V V++N G Q+VG+ +AD GLV+ SP+ RA
Sbjct: 78 LHSAQVVPAAT-STQKVQIGSRVRFVDEN-GQAHQVQLVGEDQADAVHGLVNWGSPLGRA 135
Query: 130 LIGKELGDIISVNAPGGEKTYEILQV 155
L+G GD + P G++ EI+ V
Sbjct: 136 LLGAGPGDEVLWRRPAGDQMIEIIGV 161
>gi|88856089|ref|ZP_01130750.1| transcription elongation factor [marine actinobacterium PHSC20C1]
gi|88814657|gb|EAR24518.1| transcription elongation factor [marine actinobacterium PHSC20C1]
Length = 163
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 14/156 (8%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + FD+ EL E R I K I AR GDL EN Y AAKE Q E R+ L
Sbjct: 10 LTQEAFDRRTAELEQLTGEARYDIAKKIEAAREEGDLKENGGYHAAKEEQGKIEARIRVL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-----QIVGD-QEADVQSGLV 120
++ A V D+ G + G V+ K G++ + +IV D + DV S
Sbjct: 70 TELLRHAVVGDVQDADG-LVEPGILVT--AKIMGEESVFLLGSREIVADGSDLDVYSE-- 124
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
SP+ A+ G ++G + AP G+ T EIL+V
Sbjct: 125 --KSPLGLAINGLKVGSSATYTAPNGKDITVEILKV 158
>gi|91202773|emb|CAJ72412.1| similar to regulator of nucleoside diphosphate kinase [Candidatus
Kuenenia stuttgartiensis]
Length = 139
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 56/106 (52%)
Query: 52 AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
A+E + +A L + RAEV+ + D + + V L + ++ +K Y +V +
Sbjct: 24 AEEFGGQDRKDLASLAEELERAEVVSSKDVPADVVTMNSKVVLRDLSTSEKMTYVLVFPK 83
Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A++ +G +S+ +P+ A++G GD++ + P G + I VL+
Sbjct: 84 DANIAAGAISVLAPVGTAILGYAKGDVVEWSVPSGVRRIRIDDVLY 129
>gi|254419345|ref|ZP_05033069.1| Prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Brevundimonas sp. BAL3]
gi|196185522|gb|EDX80498.1| Prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Brevundimonas sp. BAL3]
Length = 163
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 36/52 (69%), Gaps = 1/52 (1%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+ FG +VS +E+ G + ++IVG+ EAD G VS SP+ARAL+GK +GD
Sbjct: 98 VRFGGSVS-IEREDGRTQTWRIVGEDEADPAKGSVSHVSPLARALLGKRIGD 148
>gi|94985009|ref|YP_604373.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM
11300]
gi|94555290|gb|ABF45204.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM
11300]
Length = 162
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 76/150 (50%), Gaps = 9/150 (6%)
Query: 4 KIPVTSKGFDKIQQELRWRQQE--ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ +T +GF+++Q+ L Q E RI++ E A D + A +E N+ E
Sbjct: 7 QVRLTREGFERLQRTLAQEQARLAEATRILQEQMETSA--DNEDTGLEDAKREKLNI-EA 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--- 118
R+ ELE+ + RA +I+ +G R+ GA V+L + + Q+V EA V G
Sbjct: 64 RIEELEDTLARATLIEDHENAG-RVELGAVVTLNNETTKQTMRVQVVSAPEATVLGGSLP 122
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK 148
+S SP+ R L+G++ + VN G++
Sbjct: 123 RISEESPVGRQLMGRKKDETFVVNLENGKQ 152
>gi|325109624|ref|YP_004270692.1| GreA/GreB family elongation factor [Planctomyces brasiliensis DSM
5305]
gi|324969892|gb|ADY60670.1| GreA/GreB family elongation factor [Planctomyces brasiliensis DSM
5305]
Length = 138
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 51/85 (60%)
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
A+V++ + + + +T+ + E + + + Y +V + AD+ G +S+ +PI A++G
Sbjct: 45 AQVVNSEEVPPNVVTMNSTIRMREVRTREMETYTLVYPERADIAEGKLSVLAPIGTAILG 104
Query: 133 KELGDIISVNAPGGEKTYEILQVLW 157
++GDI+ N PGG ++I ++++
Sbjct: 105 YQVGDIVEWNVPGGTIRFKIEELVF 129
>gi|167647164|ref|YP_001684827.1| transcription elongation factor regulatory protein [Caulobacter sp.
K31]
gi|167349594|gb|ABZ72329.1| GreA/GreB family elongation factor [Caulobacter sp. K31]
Length = 161
Score = 50.8 bits (120), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
D + FG +V+ ++ G ++ ++IVG+ EAD G VS SP+ARAL+GK +GD V
Sbjct: 92 DVLQFGGSVTF-DREDGRRQTFRIVGEDEADPTQGSVSYVSPVARALLGKAVGDTAIVA- 149
Query: 144 PGGE 147
GGE
Sbjct: 150 -GGE 152
>gi|302062497|ref|ZP_07254038.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato K40]
Length = 165
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
R+A+LE + A+V+ +S +++ G+ ++ +++ ++ Q+VG+ +AD
Sbjct: 63 RLADLERDLRYFNQRLQSAQVV-APALSTEKVQIGSWITFADEDDNHQR-VQLVGEDQAD 120
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
GL++ SP+ RALIG + GD ++ P G+ + E+L
Sbjct: 121 AAKGLINWGSPLGRALIGAQKGDEVTWQRPAGDLSIEVL 159
>gi|28871733|ref|NP_794352.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213966755|ref|ZP_03394906.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato T1]
gi|301383263|ref|ZP_07231681.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato Max13]
gi|302133480|ref|ZP_07259470.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28854985|gb|AAO58047.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213928605|gb|EEB62149.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato T1]
gi|331018897|gb|EGH98953.1| transcription elongation factor GreB [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 165
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
R+A+LE + A+V+ +S +++ G+ ++ +++ ++ Q+VG+ +AD
Sbjct: 63 RLADLERDLRYFNQRLQSAQVV-APALSTEKVQIGSWITFADEDDNHQR-VQLVGEDQAD 120
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
GL++ SP+ RALIG + GD ++ P G+ + E+L
Sbjct: 121 AAKGLINWGSPLGRALIGAQKGDEVTWQRPAGDLSIEVL 159
>gi|291298253|ref|YP_003509531.1| transcription elongation factor GreA [Stackebrandtia nassauensis
DSM 44728]
gi|290567473|gb|ADD40438.1| transcription elongation factor GreA [Stackebrandtia nassauensis
DSM 44728]
Length = 167
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 12/146 (8%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ + +D+++ EL RP + I+ R GDL EN Y AAK+ Q E R+ L
Sbjct: 13 LSQEAYDRLKAELD-EHIANRPAMAAEINARREEGDLRENGGYHAAKDEQGKIESRIRYL 71
Query: 67 ENIITRAEV----IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV-- 120
E+ + +A+V +D+ ++ G+ V++ + + ++G +E + L
Sbjct: 72 EDFLRKAQVGEAPVDVKGVTP-----GSVVTIAFDDDPEDTETFLLGSREISATTDLTVY 126
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S S + A++G GD ++ AP G
Sbjct: 127 SPESALGAAILGHAEGDTVTYTAPSG 152
>gi|134094680|ref|YP_001099755.1| hypothetical protein HEAR1457 [Herminiimonas arsenicoxydans]
gi|133738583|emb|CAL61628.1| Putative transcription elongation factor GreA [Herminiimonas
arsenicoxydans]
Length = 139
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL +II+ + ++ I+ D ++ +TVS NS +K++ IV Q+A+ Q L+S +
Sbjct: 35 ELIDIISTSVILPINAPRKDCVSLYSTVSYSPYNSDEKRSITIVCPQDANPQLALISTLT 94
Query: 125 PIARALIGKELGDIISVNAPGG 146
PI ALIG+++ I V P
Sbjct: 95 PIGLALIGRKVSSTIEVELPSN 116
>gi|332716346|ref|YP_004443812.1| Transcription elongation factor [Agrobacterium sp. H13-3]
gi|325063031|gb|ADY66721.1| Transcription elongation factor [Agrobacterium sp. H13-3]
Length = 163
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 5/70 (7%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+AFG+ V+ ++ G + ++IVG+ EAD +G +S SP+A L+GK GD++S+
Sbjct: 98 VAFGSVVTF-SRDDGRTQRFRIVGEDEADPANGSMSYVSPVAGLLMGKSAGDVVSL---- 152
Query: 146 GEKTYEILQV 155
G K EI++V
Sbjct: 153 GGKEIEIIEV 162
>gi|226356455|ref|YP_002786195.1| transcription elongation factor [Deinococcus deserti VCD115]
gi|226318445|gb|ACO46441.1| putative transcription elongation factor [Deinococcus deserti
VCD115]
Length = 162
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 8/161 (4%)
Query: 1 MVDKIPVTSKGFDKIQQEL---RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M D + +T +G+++++Q L R R +E + + +A + S NA Q +E
Sbjct: 1 MPDAVQLTREGYERLEQSLEKERQRLEETITSLANTVDDAMDLENRSLNA-AQIGQERIA 59
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
+ E R+ ELE+++ RA +++ + ++A G+ V L + G + Q+V E +
Sbjct: 60 I-EARILELEDVLARAVIVEEEDLPRGQVAVGSVVMLEDDKHGRQLQVQLVSAVEISAMT 118
Query: 118 -GLVSIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
G+ +S SP+ +AL+G+ G+ V G Y + V
Sbjct: 119 EGVTQVSDDSPVGKALMGRREGETFDVELEAGRVQYTVRSV 159
>gi|90422718|ref|YP_531088.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
BisB18]
gi|90104732|gb|ABD86769.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
BisB18]
Length = 154
Score = 50.4 bits (119), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
++ FG+TV+ + +N ++ ++IVG+ EAD +G +S P+AR+L GK +GD++
Sbjct: 88 KVRFGSTVT-IRRNDDRRQTFRIVGEDEADPPNGTISHVLPLARSLFGKRVGDVV 141
>gi|319952551|ref|YP_004163818.1| grea/greb family elongation factor [Cellulophaga algicola DSM
14237]
gi|319421211|gb|ADV48320.1| GreA/GreB family elongation factor [Cellulophaga algicola DSM
14237]
Length = 139
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 66/125 (52%), Gaps = 10/125 (8%)
Query: 40 YGDLS-ENAEYQAAKELQNLN--------EGRMAELENIITRAEVIDISTMSGDRIAFGA 90
YG ++ E EY K +L+ + + +L ++ A+V + + M D I F +
Sbjct: 3 YGTITIEKKEYVMLKRFLHLSGYHRDTTFKKSIRKLSEELSFAKVCNNNEMPKDVIRFNS 62
Query: 91 TVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY 150
V++ N+G K +Q+V +++D+++ VSI +P+ A+IG GD IS P GE+
Sbjct: 63 IVTITA-NNGWTKEFQLVTPKDSDLKNNKVSILTPMGAAVIGYAEGDTISWEFPSGEQQL 121
Query: 151 EILQV 155
+ +V
Sbjct: 122 TVSKV 126
>gi|239831415|ref|ZP_04679744.1| Transcription elongation factor greA [Ochrobactrum intermedium LMG
3301]
gi|239823682|gb|EEQ95250.1| Transcription elongation factor greA [Ochrobactrum intermedium LMG
3301]
Length = 157
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135
+ + D + FG TV L + G + + IVG+ EAD +G +S +P+A L GK +
Sbjct: 79 LSVPAADSDVVRFGMTVELENLDDGKVRRWTIVGEDEADPSNGKISHVAPVAILLFGKPV 138
Query: 136 GDIISVN 142
GD++ +N
Sbjct: 139 GDVVKIN 145
>gi|238062787|ref|ZP_04607496.1| transcription elongation factor greA [Micromonospora sp. ATCC
39149]
gi|237884598|gb|EEP73426.1| transcription elongation factor greA [Micromonospora sp. ATCC
39149]
Length = 166
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 5/137 (3%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+ L+ ++
Sbjct: 18 HDRLQAELD-ELIANRPAIAAEINARREEGDLRENGGYHAAREEQGKQEGRILYLKELLR 76
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV--SISSPIARA 129
A+V + S D ++ G V++ + D ++G +E + L S S + ++
Sbjct: 77 TAQVGEAP--SADTVSPGMVVTIYFDDDTDDTETFLLGSREISSTTELTVYSPESALGKS 134
Query: 130 LIGKELGDIISVNAPGG 146
++G G ++ AP G
Sbjct: 135 ILGTRPGQTVTYTAPSG 151
>gi|319795584|ref|YP_004157224.1| grea/greb family elongation factor [Variovorax paradoxus EPS]
gi|315598047|gb|ADU39113.1| GreA/GreB family elongation factor [Variovorax paradoxus EPS]
Length = 135
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 4/107 (3%)
Query: 55 LQNLNEGRM---AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
L L GR A L +++ AEV+ + D + + LV+ ++G ++ + +
Sbjct: 19 LSKLLPGRALLPAHLADLLASAEVMSSRAVPCDVVTMNSRAELVDVHTGRRQTLTVCFPK 78
Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+A+ +G +S+ SP+ +L+G +GDI + P G+ E+ VL+
Sbjct: 79 DAEPAAGFISVLSPVGSSLLGLRVGDIARWHTPNGDDCAAEVAAVLF 125
>gi|169830342|ref|YP_001716324.1| GreA/GreB family elongation factor [Candidatus Desulforudis
audaxviator MP104C]
gi|169637186|gb|ACA58692.1| GreA/GreB family elongation factor [Candidatus Desulforudis
audaxviator MP104C]
Length = 154
Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%)
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
++ RA V++ G + + + + G + +++V E + +G VS SP+ R
Sbjct: 63 LLARARVVEGQCPPLPLTLIGCDIRVEDLDRGHSEMFRVVSPYEINPAAGHVSFLSPVGR 122
Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVLW 157
L+ KE G +++V APGG Y ++ V +
Sbjct: 123 GLLLKEPGQVLAVQAPGGTFRYRVVSVTY 151
>gi|62289525|ref|YP_221318.1| transcription elongation factor [Brucella abortus bv. 1 str. 9-941]
gi|82699455|ref|YP_414029.1| transcription elongation factor GreA/GreB [Brucella melitensis
biovar Abortus 2308]
gi|189023782|ref|YP_001934550.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus S19]
gi|237815022|ref|ZP_04594020.1| Transcription elongation factor greA [Brucella abortus str. 2308 A]
gi|254688843|ref|ZP_05152097.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus bv. 6 str. 870]
gi|254696973|ref|ZP_05158801.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus bv. 2 str. 86/8/59]
gi|254729874|ref|ZP_05188452.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus bv. 4 str. 292]
gi|256257090|ref|ZP_05462626.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus bv. 9 str. C68]
gi|260545721|ref|ZP_05821462.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus NCTC 8038]
gi|260754325|ref|ZP_05866673.1| GreA/GreB family elongation factor [Brucella abortus bv. 6 str.
870]
gi|260757544|ref|ZP_05869892.1| GreA/GreB family elongation factor [Brucella abortus bv. 4 str.
292]
gi|260761369|ref|ZP_05873712.1| GreA/GreB family elongation factor [Brucella abortus bv. 2 str.
86/8/59]
gi|260883350|ref|ZP_05894964.1| GreA/GreB family elongation factor [Brucella abortus bv. 9 str.
C68]
gi|297247937|ref|ZP_06931655.1| transcription elongation factor regulatory protein [Brucella
abortus bv. 5 str. B3196]
gi|62195657|gb|AAX73957.1| transcription elongation factor [Brucella abortus bv. 1 str. 9-941]
gi|82615556|emb|CAJ10536.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
melitensis biovar Abortus 2308]
gi|189019354|gb|ACD72076.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus S19]
gi|237789859|gb|EEP64069.1| Transcription elongation factor greA [Brucella abortus str. 2308 A]
gi|260097128|gb|EEW81003.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus NCTC 8038]
gi|260667862|gb|EEX54802.1| GreA/GreB family elongation factor [Brucella abortus bv. 4 str.
292]
gi|260671801|gb|EEX58622.1| GreA/GreB family elongation factor [Brucella abortus bv. 2 str.
86/8/59]
gi|260674433|gb|EEX61254.1| GreA/GreB family elongation factor [Brucella abortus bv. 6 str.
870]
gi|260872878|gb|EEX79947.1| GreA/GreB family elongation factor [Brucella abortus bv. 9 str.
C68]
gi|297175106|gb|EFH34453.1| transcription elongation factor regulatory protein [Brucella
abortus bv. 5 str. B3196]
Length = 156
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 23/138 (16%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VTS G +I EL R+ ++EA G+ S A +L
Sbjct: 28 VTSAGLKQIDDEL--------ARLQHDLAEANIAGERSAVARISR-------------DL 66
Query: 67 ENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ R E ++S + D + FG TV L + G + + IVG+ EAD G +S +
Sbjct: 67 RYWMARRETAELSVPAPDSDVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHVA 126
Query: 125 PIARALIGKELGDIISVN 142
P++ L GK +GD++ +N
Sbjct: 127 PVSILLFGKPVGDVVKIN 144
>gi|237801440|ref|ZP_04589901.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331024299|gb|EGI04356.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 116
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
+S D++ G+ V+ +++ +++ +VG+ +AD +GL++ SP+ RALIG GD +
Sbjct: 38 AVSTDKVQIGSWVTFADEDD-NRQRVHLVGEDQADAANGLINWGSPLGRALIGARQGDEV 96
Query: 140 SVNAPGGEKTYEIL 153
P G+ + E+L
Sbjct: 97 VWQRPAGDLSIEVL 110
>gi|28493647|ref|NP_787808.1| transcription elongation factor [Tropheryma whipplei str. Twist]
gi|28476689|gb|AAO44777.1| transcription elongation factor [Tropheryma whipplei str. Twist]
Length = 172
Score = 50.1 bits (118), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
R I K I +AR+ GDL EN Y AAKE Q EGR+ +L++++ A V G
Sbjct: 39 RKEIAKRIEQARSEGDLRENGGYSAAKEEQARIEGRIQQLQDLLRHARVGQAPKARG--- 95
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI--SSPIARALIGKELGDIISVNAP 144
V + + G ++ + ++G++E S L + SS I +A++G + G I +P
Sbjct: 96 VVEPGVVVTARIGGSERRF-LLGNREIAHTSSLATYSESSAIGQAILGLKEGSEIECKSP 154
Query: 145 GG 146
G
Sbjct: 155 TG 156
>gi|153010033|ref|YP_001371248.1| GreA/GreB family elongation factor [Ochrobactrum anthropi ATCC
49188]
gi|151561921|gb|ABS15419.1| GreA/GreB family elongation factor [Ochrobactrum anthropi ATCC
49188]
Length = 156
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135
+ + D + FG TV L + G + + IVG+ EAD +G +S +P+A L GK +
Sbjct: 78 LSVPVPDSDVVRFGMTVELENLDDGKVRRWTIVGEDEADPSNGKISHVAPVAILLFGKPV 137
Query: 136 GDIISVN 142
GD++ +N
Sbjct: 138 GDVVKIN 144
>gi|167565571|ref|ZP_02358487.1| regulator of nucleoside diphosphate kinase [Burkholderia
oklahomensis EO147]
Length = 132
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ RA++++ + + + + + + L+++ +G + IV A+ + G +++ SP
Sbjct: 30 LDTLLERADIVEPNKIQANVVTMNSQIKLIDETAGQDMTWTIVYPDAANFEQGRLNVFSP 89
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ AL+G G+ + V PGG + T +I ++++
Sbjct: 90 VGMALLGARCGEQVKVTLPGGADATLKIAEIVY 122
>gi|256426014|ref|YP_003126667.1| GreA/GreB family elongation factor [Chitinophaga pinensis DSM 2588]
gi|256040922|gb|ACU64466.1| GreA/GreB family elongation factor [Chitinophaga pinensis DSM 2588]
Length = 131
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA ++D ++ I + VS+ E NSG +++IV +AD++ +SI +P+ A
Sbjct: 44 LNRAVIVDNESLPVGTIRLNSLVSVKEVNSGKVTDFRIVMPIDADIKQKKISILAPLGAA 103
Query: 130 LIGKELGDIISVNAPGGEKTYEILQV 155
LIG GD + P G K + +L V
Sbjct: 104 LIGFRKGDEVEWKMPAGVKRFTVLNV 129
>gi|126458551|ref|YP_001075250.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1106a]
gi|134279304|ref|ZP_01766017.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 305]
gi|167723223|ref|ZP_02406459.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei DM98]
gi|167742194|ref|ZP_02414968.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 14]
gi|167849216|ref|ZP_02474724.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei B7210]
gi|167906159|ref|ZP_02493364.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei NCTC 13177]
gi|167914483|ref|ZP_02501574.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 112]
gi|217418762|ref|ZP_03450269.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 576]
gi|237508824|ref|ZP_04521539.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei MSHR346]
gi|242312653|ref|ZP_04811670.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1106b]
gi|254300234|ref|ZP_04967680.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 406e]
gi|126232319|gb|ABN95732.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1106a]
gi|134249723|gb|EBA49804.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 305]
gi|157810014|gb|EDO87184.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 406e]
gi|217398066|gb|EEC38081.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 576]
gi|235001029|gb|EEP50453.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei MSHR346]
gi|242135892|gb|EES22295.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1106b]
Length = 132
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ RA++++ + + + + + + L+++ +G + IV A+ + G +++ SP
Sbjct: 30 LDTLLERADIVEPNKIQANVVTMNSQIKLLDETAGQDMAWTIVYPDAANFEQGRLNVFSP 89
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ AL+G G+ + V PGG + T +I+++++
Sbjct: 90 VGMALLGSRCGERVKVTLPGGADATLKIVEIVY 122
>gi|28572840|ref|NP_789620.1| transcription elongation factor GreA [Tropheryma whipplei TW08/27]
gi|28410973|emb|CAD67358.1| transcription elongation factor GreA [Tropheryma whipplei TW08/27]
Length = 162
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 6/122 (4%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
R I K I +AR+ GDL EN Y AAKE Q EGR+ +L++++ A V G
Sbjct: 29 RKEIAKRIEQARSEGDLRENGGYSAAKEEQARIEGRIQQLQDLLRHARVGQAPKARG--- 85
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI--SSPIARALIGKELGDIISVNAP 144
V + + G ++ + ++G++E S L + SS I +A++G + G I +P
Sbjct: 86 VVEPGVVVTARIGGSERRF-LLGNREIAHTSSLATYSESSAIGQAILGLKEGSEIECKSP 144
Query: 145 GG 146
G
Sbjct: 145 TG 146
>gi|192360518|ref|YP_001983831.1| regulator of nucleoside diphosphate kinase [Cellvibrio japonicus
Ueda107]
gi|190686683|gb|ACE84361.1| regulator of nucleoside diphosphate kinase [Cellvibrio japonicus
Ueda107]
Length = 180
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 46 NAEYQAAKELQNLNEGRMAELENI-ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104
N++YQ +L N+ AE +I I RA ++ + + D +A + V+ + +SG++K
Sbjct: 65 NSDYQRLVQLIEDNDSPAAEALDIEIGRATLVADAQLPADVVAMDSEVTFEDLDSGEQKT 124
Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
Q+V +A+V +SI SP+ ALIG +G I P G+
Sbjct: 125 IQLVFPAQANVDQLKISILSPVGSALIGLRIGSSIDWPVPQGK 167
>gi|114706677|ref|ZP_01439578.1| nucleoside diphosphate kinase regulator [Fulvimarina pelagi
HTCC2506]
gi|114538069|gb|EAU41192.1| nucleoside diphosphate kinase regulator [Fulvimarina pelagi
HTCC2506]
Length = 156
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ FG V+ +E++ G K+++ IVG EAD + G +S SP+AR L+GK +G+ + V A
Sbjct: 89 VQFGTRVT-IERDDGQKQSFTIVGIDEADPRDGYLSYLSPLARNLVGKNVGEEVKVGASN 147
Query: 146 GE 147
E
Sbjct: 148 AE 149
>gi|227877960|ref|ZP_03995964.1| possible transcription elongation factor GreA [Lactobacillus
crispatus JV-V01]
gi|227862430|gb|EEJ69945.1| possible transcription elongation factor GreA [Lactobacillus
crispatus JV-V01]
Length = 85
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
++ G TV L + + + Y++VG EAD+ +G VS SP+ +A++ KE G +V AP
Sbjct: 14 KVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPLGQAIMKKEAGTTATVAAP 73
Query: 145 GGEKTYEILQV 155
GE I++V
Sbjct: 74 VGEYQVTIVEV 84
>gi|23501445|ref|NP_697572.1| transcription elongation factor GreA domain-containing protein
[Brucella suis 1330]
gi|161618529|ref|YP_001592416.1| transcription elongation factor GreA [Brucella canis ATCC 23365]
gi|254703897|ref|ZP_05165725.1| transcription elongation factor GreA [Brucella suis bv. 3 str. 686]
gi|261754547|ref|ZP_05998256.1| GreA/GreB family elongation factor [Brucella suis bv. 3 str. 686]
gi|23347347|gb|AAN29487.1| transcription elongation factor GreA domain protein [Brucella suis
1330]
gi|161335340|gb|ABX61645.1| Transcription elongation factor greA [Brucella canis ATCC 23365]
gi|261744300|gb|EEY32226.1| GreA/GreB family elongation factor [Brucella suis bv. 3 str. 686]
Length = 156
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 65 ELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+L + R E ++S + D + FG TV L + G + + IVG+ EAD G +S
Sbjct: 65 DLRYWMARRETAELSVPAPDSHVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISH 124
Query: 123 SSPIARALIGKELGDIISVN 142
+P++ L GK +GD++ +N
Sbjct: 125 VAPVSILLFGKPVGDVVKIN 144
>gi|316932410|ref|YP_004107392.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
DX-1]
gi|315600124|gb|ADU42659.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
DX-1]
Length = 134
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 58/127 (45%), Gaps = 12/127 (9%)
Query: 24 QEERPRIIKAISEARAYGDLSENA--EYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81
+ +RP I +A G L+E A Y A E L + RA V S
Sbjct: 6 RTQRPPITLRSRDAERLGQLAEVAAQRYPATAEF----------LAGEVARASVAPDSAP 55
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
+ + ++ + +G +K+ +V EADV++G +SI +PI ALIG +G IS
Sbjct: 56 LPGIVCMESALTFRDDTTGKEKHVTLVYPTEADVEAGRISILTPIGAALIGLSVGQSISF 115
Query: 142 NAPGGEK 148
P GE+
Sbjct: 116 ETPSGER 122
>gi|320008884|gb|ADW03734.1| transcription elongation factor GreA [Streptomyces flavogriseus
ATCC 33331]
Length = 165
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTPEAYNQLKAELEYLSGPARTEISVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE---ADVQSGLVSIS 123
++ A+V + G + G V++ D ++ +E AD+++ S
Sbjct: 71 TQLLEHAKVGEAPADDG-VVEPGMVVTIAFDGDPDDTVTFLLASREYASADIET--YSPQ 127
Query: 124 SPIARALIGKELGDIISVNAPGGEK 148
SP+ + GK GD P G+K
Sbjct: 128 SPLGTGVNGKRTGDEAEYELPNGKK 152
>gi|229817907|ref|ZP_04448189.1| hypothetical protein BIFANG_03193 [Bifidobacterium angulatum DSM
20098]
gi|229784807|gb|EEP20921.1| hypothetical protein BIFANG_03193 [Bifidobacterium angulatum DSM
20098]
Length = 114
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 7/105 (6%)
Query: 44 SENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK 103
SEN Y AA+E Q +N+GR+ EL + A++ ++ ++ G+ V+L +G +K
Sbjct: 1 SENGGYHAAREAQRVNQGRIEELTFKLRHAKI--LTAPPAGKVGDGSLVTL--DMNGREK 56
Query: 104 NYQIVGDQEADVQS--GLVSISSPIARALIGKELGDIISVNAPGG 146
+ ++G + + + ++S SPI A+ G ++GD +S AP G
Sbjct: 57 VF-VLGSHDLAIATDQAIISPESPIGAAIYGAKVGDTVSYKAPNG 100
>gi|118594647|ref|ZP_01551994.1| transcription elongation factor, putative [Methylophilales
bacterium HTCC2181]
gi|118440425|gb|EAV47052.1| transcription elongation factor, putative [Methylophilales
bacterium HTCC2181]
Length = 166
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
+++ FGA + L E G+ ++Y+IVG+ EAD+ +S SP+A++++G LGD +++
Sbjct: 92 NKVLFGALIEL-EDEKGETESYEIVGEDEADLALRKISYVSPLAKSVMGNSLGDEVTLIK 150
Query: 144 PGGEKTYEILQVLW 157
P T I + +
Sbjct: 151 PTATVTLTIKNITY 164
>gi|260566855|ref|ZP_05837325.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
suis bv. 4 str. 40]
gi|260156373|gb|EEW91453.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
suis bv. 4 str. 40]
Length = 156
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 65 ELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+L + R E ++S + D + FG TV L + G + + IVG+ EAD G +S
Sbjct: 65 DLRYWMARRETAELSVPAPDSHVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISH 124
Query: 123 SSPIARALIGKELGDIISVN 142
+P++ L GK +GD++ +N
Sbjct: 125 VAPVSILLFGKPVGDVVKIN 144
>gi|17987660|ref|NP_540294.1| transcription elongation factor GREB [Brucella melitensis bv. 1
str. 16M]
gi|148560110|ref|YP_001258556.1| transcription elongation factor GreA domain-containing protein
[Brucella ovis ATCC 25840]
gi|163842833|ref|YP_001627237.1| transcription elongation factor GreA [Brucella suis ATCC 23445]
gi|225627062|ref|ZP_03785100.1| Transcription elongation factor greA [Brucella ceti str. Cudo]
gi|225852085|ref|YP_002732318.1| Transcription elongation factor greA [Brucella melitensis ATCC
23457]
gi|254693324|ref|ZP_05155152.1| Transcription elongation factor greA [Brucella abortus bv. 3 str.
Tulya]
gi|254701352|ref|ZP_05163180.1| Transcription elongation factor greA [Brucella suis bv. 5 str. 513]
gi|254707727|ref|ZP_05169555.1| Transcription elongation factor greA [Brucella pinnipedialis
M163/99/10]
gi|254709691|ref|ZP_05171502.1| Transcription elongation factor greA [Brucella pinnipedialis B2/94]
gi|254712888|ref|ZP_05174699.1| Transcription elongation factor greA [Brucella ceti M644/93/1]
gi|254716758|ref|ZP_05178569.1| Transcription elongation factor greA [Brucella ceti M13/05/1]
gi|256031182|ref|ZP_05444796.1| Transcription elongation factor greA [Brucella pinnipedialis
M292/94/1]
gi|256044265|ref|ZP_05447169.1| Transcription elongation factor greA [Brucella melitensis bv. 1
str. Rev.1]
gi|256060689|ref|ZP_05450853.1| Transcription elongation factor greA [Brucella neotomae 5K33]
gi|256113099|ref|ZP_05453976.1| Transcription elongation factor greA [Brucella melitensis bv. 3
str. Ether]
gi|256159272|ref|ZP_05457075.1| Transcription elongation factor greA [Brucella ceti M490/95/1]
gi|256254589|ref|ZP_05460125.1| Transcription elongation factor greA [Brucella ceti B1/94]
gi|256264405|ref|ZP_05466937.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
melitensis bv. 2 str. 63/9]
gi|256368997|ref|YP_003106503.1| transcription elongation factor GreA domain protein [Brucella
microti CCM 4915]
gi|260168317|ref|ZP_05755128.1| transcription elongation factor GreA domain protein [Brucella sp.
F5/99]
gi|260563619|ref|ZP_05834105.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
melitensis bv. 1 str. 16M]
gi|261213571|ref|ZP_05927852.1| GreA/GreB family elongation factor [Brucella abortus bv. 3 str.
Tulya]
gi|261218555|ref|ZP_05932836.1| GreA/GreB family elongation factor [Brucella ceti M13/05/1]
gi|261221763|ref|ZP_05936044.1| GreA/GreB family elongation factor [Brucella ceti B1/94]
gi|261315220|ref|ZP_05954417.1| GreA/GreB family elongation factor [Brucella pinnipedialis
M163/99/10]
gi|261317221|ref|ZP_05956418.1| GreA/GreB family elongation factor [Brucella pinnipedialis B2/94]
gi|261320596|ref|ZP_05959793.1| GreA/GreB family elongation factor [Brucella ceti M644/93/1]
gi|261324679|ref|ZP_05963876.1| GreA/GreB family elongation factor [Brucella neotomae 5K33]
gi|261751889|ref|ZP_05995598.1| GreA/GreB family elongation factor [Brucella suis bv. 5 str. 513]
gi|261757777|ref|ZP_06001486.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
F5/99]
gi|265988260|ref|ZP_06100817.1| GreA/GreB family elongation factor [Brucella pinnipedialis
M292/94/1]
gi|265990676|ref|ZP_06103233.1| GreA/GreB family elongation factor [Brucella melitensis bv. 1 str.
Rev.1]
gi|265994508|ref|ZP_06107065.1| GreA/GreB family elongation factor [Brucella melitensis bv. 3 str.
Ether]
gi|265997727|ref|ZP_06110284.1| GreA/GreB family elongation factor [Brucella ceti M490/95/1]
gi|294851925|ref|ZP_06792598.1| transcription elongation factor regulatory protein [Brucella sp.
NVSL 07-0026]
gi|17983373|gb|AAL52558.1| transcription elongation factor greb [Brucella melitensis bv. 1
str. 16M]
gi|148371367|gb|ABQ61346.1| transcription elongation factor GreA domain protein [Brucella ovis
ATCC 25840]
gi|163673556|gb|ABY37667.1| Transcription elongation factor greA [Brucella suis ATCC 23445]
gi|225617897|gb|EEH14941.1| Transcription elongation factor greA [Brucella ceti str. Cudo]
gi|225640450|gb|ACO00364.1| Transcription elongation factor greA [Brucella melitensis ATCC
23457]
gi|255999155|gb|ACU47554.1| transcription elongation factor GreA domain protein [Brucella
microti CCM 4915]
gi|260153635|gb|EEW88727.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
melitensis bv. 1 str. 16M]
gi|260915178|gb|EEX82039.1| GreA/GreB family elongation factor [Brucella abortus bv. 3 str.
Tulya]
gi|260920347|gb|EEX87000.1| GreA/GreB family elongation factor [Brucella ceti B1/94]
gi|260923644|gb|EEX90212.1| GreA/GreB family elongation factor [Brucella ceti M13/05/1]
gi|261293286|gb|EEX96782.1| GreA/GreB family elongation factor [Brucella ceti M644/93/1]
gi|261296444|gb|EEX99940.1| GreA/GreB family elongation factor [Brucella pinnipedialis B2/94]
gi|261300659|gb|EEY04156.1| GreA/GreB family elongation factor [Brucella neotomae 5K33]
gi|261304246|gb|EEY07743.1| GreA/GreB family elongation factor [Brucella pinnipedialis
M163/99/10]
gi|261737761|gb|EEY25757.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
F5/99]
gi|261741642|gb|EEY29568.1| GreA/GreB family elongation factor [Brucella suis bv. 5 str. 513]
gi|262552195|gb|EEZ08185.1| GreA/GreB family elongation factor [Brucella ceti M490/95/1]
gi|262765621|gb|EEZ11410.1| GreA/GreB family elongation factor [Brucella melitensis bv. 3 str.
Ether]
gi|263001460|gb|EEZ14035.1| GreA/GreB family elongation factor [Brucella melitensis bv. 1 str.
Rev.1]
gi|263094699|gb|EEZ18478.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
melitensis bv. 2 str. 63/9]
gi|264660457|gb|EEZ30718.1| GreA/GreB family elongation factor [Brucella pinnipedialis
M292/94/1]
gi|294820514|gb|EFG37513.1| transcription elongation factor regulatory protein [Brucella sp.
NVSL 07-0026]
gi|326408580|gb|ADZ65645.1| Transcription elongation factor greA [Brucella melitensis M28]
gi|326538299|gb|ADZ86514.1| transcription elongation factor greA [Brucella melitensis M5-90]
Length = 156
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 65 ELENIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+L + R E ++S + D + FG TV L + G + + IVG+ EAD G +S
Sbjct: 65 DLRYWMARRETAELSVPAPDSDVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISH 124
Query: 123 SSPIARALIGKELGDIISVN 142
+P++ L GK +GD++ +N
Sbjct: 125 VAPVSILLFGKPVGDVVKIN 144
>gi|255324383|ref|ZP_05365500.1| transcription elongation factor GreA [Corynebacterium
tuberculostearicum SK141]
gi|311740763|ref|ZP_07714590.1| transcription elongation factor GreA [Corynebacterium
pseudogenitalium ATCC 33035]
gi|255298289|gb|EET77589.1| transcription elongation factor GreA [Corynebacterium
tuberculostearicum SK141]
gi|311304283|gb|EFQ80359.1| transcription elongation factor GreA [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 173
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
+ RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ ++ A + G
Sbjct: 26 DHRPVVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQISEVLANATTERGAVQEG- 84
Query: 85 RIAFGATVSLVEKNSGDKKNYQ--IVGDQEA-----DVQSGLVSISSPIARALIGKELGD 137
+A +V V N GDK + + ++G + A D+++ S SP+ A++G + G+
Sbjct: 85 -VAHTGSVVHVYYN-GDKDDKETFLIGTRAAASDNKDLET--YSEQSPLGAAILGAQEGE 140
Query: 138 IISVNAPGG 146
AP G
Sbjct: 141 TREYTAPNG 149
>gi|83716392|ref|YP_439713.1| nucleoside diphosphate kinase regulator [Burkholderia thailandensis
E264]
gi|257142852|ref|ZP_05591114.1| nucleoside diphosphate kinase regulator, putative [Burkholderia
thailandensis E264]
gi|83650217|gb|ABC34281.1| nucleoside diphosphate kinase regulator, putative [Burkholderia
thailandensis E264]
Length = 132
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ RA++++ + + + + + L+++ +G + IV A+ + G +++ SP
Sbjct: 30 LDTLLERADIVEPDKIQANVVTMNSQIKLLDETAGQDMTWTIVYPDAANFEHGWLNVFSP 89
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ AL+G G+ + V PGG + T +I+++++
Sbjct: 90 VGMALLGARRGERVKVTLPGGTDATLKIVEIVY 122
>gi|329847111|ref|ZP_08262139.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Asticcacaulis biprosthecum C19]
gi|328842174|gb|EGF91743.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Asticcacaulis biprosthecum C19]
Length = 159
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
+ FG TV+ +E+ G + ++IVG+ EAD + G +S SP+A+AL+GK L D + ++
Sbjct: 94 VVFGCTVT-IERADGRTQTFRIVGEDEADPKQGSISYVSPLAQALMGKTLDDEVRLD 149
>gi|21111854|gb|AAM40146.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 135
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%)
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
N A L + + RA V+ + GD + + + ++ G++ +V EADVQ
Sbjct: 26 NHPAAAALADELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHS 85
Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146
+S+ +P+ AL+G +G I APGG
Sbjct: 86 RISVLAPVGTALLGLSVGQSIDWRAPGG 113
>gi|258654538|ref|YP_003203694.1| transcription elongation factor GreA [Nakamurella multipartita DSM
44233]
gi|258557763|gb|ACV80705.1| transcription elongation factor GreA [Nakamurella multipartita DSM
44233]
Length = 163
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 4/142 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL RP I I+ R GDL EN Y AA++ Q E R+ L
Sbjct: 9 LTQEAHDRLKHELD-ELVLHRPVIAAEINARREEGDLKENGGYHAARDEQAKQESRIRHL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124
+ ++ A+V ++ + G V++ D K ++G +E V + S S
Sbjct: 68 QELLRDAQV-GVAPADDGVVEPGMVVTIAYDGDDDDKETFLLGSREEGVHGSMPVYSPQS 126
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ +A++G G+ P G
Sbjct: 127 PLGQAILGASRGESREYTLPNG 148
>gi|77747771|ref|NP_636222.2| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|188992915|ref|YP_001904925.1| Regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. campestris str. B100]
gi|167734675|emb|CAP52885.1| Regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. campestris]
Length = 143
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%)
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
N A L + + RA V+ + GD + + + ++ G++ +V EADVQ
Sbjct: 34 NHPAAAALADELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHS 93
Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146
+S+ +P+ AL+G +G I APGG
Sbjct: 94 RISVLAPVGTALLGLSVGQSIDWRAPGG 121
>gi|167572677|ref|ZP_02365551.1| regulator of nucleoside diphosphate kinase [Burkholderia
oklahomensis C6786]
Length = 132
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ RA++++ + + + + + + L+++ +G + IV A+ + G +++ SP
Sbjct: 30 LDTLLERADIVEPNKIQANVVTMNSQIKLIDETAGQDMAWTIVYPDAANFEQGRLNVFSP 89
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ AL+G G+ + V PGG + T +I ++++
Sbjct: 90 VGMALLGARCGEQVKVTLPGGADATLKIAEIVY 122
>gi|330888755|gb|EGH21416.1| transcription elongation factor GreB [Pseudomonas syringae pv. mori
str. 301020]
Length = 165
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
A+V+ + +S +++ G+ V+ ++ + +++ +VG+ +AD GL++ SP+ RALIG
Sbjct: 81 AQVV-TTAVSTEKVQIGSWVTFADEEN-NRQRVHLVGEDQADAAKGLINWGSPLGRALIG 138
Query: 133 KELGDIISVNAPGGEKTYEIL 153
+ GD + P G ++ EIL
Sbjct: 139 AQKGDEVVWERPAGNQSIEIL 159
>gi|298488825|ref|ZP_07006852.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298156666|gb|EFH97759.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 165
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ A+V+ + +S +++ G+ V+ ++ +++ +VG+ +AD GL++ SP+ RA
Sbjct: 78 LQSAQVV-TTAVSTEKVQIGSWVTFADEED-NRQRVHLVGEDQADAAKGLINWGSPLGRA 135
Query: 130 LIGKELGDIISVNAPGGEKTYEIL 153
LIG + GD + P G ++ EIL
Sbjct: 136 LIGAQKGDEVVWEPPAGNQSIEIL 159
>gi|167578153|ref|ZP_02371027.1| nucleoside diphosphate kinase regulator, putative [Burkholderia
thailandensis TXDOH]
gi|167616284|ref|ZP_02384919.1| nucleoside diphosphate kinase regulator, putative [Burkholderia
thailandensis Bt4]
Length = 132
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ RA++++ + + + + + L+++ +G + IV A+ + G +++ SP
Sbjct: 30 LDTLLERADIVEPDKIQANVVTMNSQIKLLDETAGQDMTWTIVYPDAANFEHGRLNVFSP 89
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ AL+G G+ + V PGG + T +I+++++
Sbjct: 90 VGMALLGARRGERVKVTLPGGTDATLKIVEIVY 122
>gi|331089360|ref|ZP_08338260.1| hypothetical protein HMPREF1025_01843 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330405423|gb|EGG84958.1| hypothetical protein HMPREF1025_01843 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 67
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 34/48 (70%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK 53
+T +KI++E+ R+ ER +I+A+ EAR++GDLSEN EY AAK
Sbjct: 4 KLTKSDVEKIREEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAK 51
>gi|254389866|ref|ZP_05005089.1| transcription elongation factor greA [Streptomyces clavuligerus
ATCC 27064]
gi|294814692|ref|ZP_06773335.1| Transcription elongation factor [Streptomyces clavuligerus ATCC
27064]
gi|326443074|ref|ZP_08217808.1| transcription elongation factor GreA [Streptomyces clavuligerus
ATCC 27064]
gi|197703576|gb|EDY49388.1| transcription elongation factor greA [Streptomyces clavuligerus
ATCC 27064]
gi|294327291|gb|EFG08934.1| Transcription elongation factor [Streptomyces clavuligerus ATCC
27064]
Length = 165
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 2/141 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +++++ EL R I K I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNQLKAELEHLSGPARVEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V + G + G V++ + + D + + + A S SP
Sbjct: 71 TQLLDSAKVGEAPADDG-VVEPGMVVTIAFDGDEDDTLTFLMASREYASSNIETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGG 146
+ + GK++GD P G
Sbjct: 130 LGTGVNGKKVGDTAEYELPNG 150
>gi|145295136|ref|YP_001137957.1| transcription elongation factor GreA [Corynebacterium glutamicum R]
gi|140845056|dbj|BAF54055.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 174
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
VDK +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ E
Sbjct: 4 VDKQYITPETKAKLEEELNALIAH-RPAVAAEINERREEGDLKENAGYDAAREMQDQEEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIA-FGATVSL-VEKNSGDKKNYQIVGDQEADVQSGL 119
R+ ++ ++ + + G +A G+ V + + + DK+ + I A L
Sbjct: 63 RIKQISELLANSTTEREGIIEG--VANVGSVVHVYYDGDENDKETFLIGTRAGASENPDL 120
Query: 120 VSIS--SPIARALIGKELGDIISVNAPGG 146
+ S SP+ A++G + GD AP G
Sbjct: 121 ETYSEQSPLGAAILGAQEGDTRQYTAPNG 149
>gi|284989519|ref|YP_003408073.1| transcription elongation factor GreA [Geodermatophilus obscurus DSM
43160]
gi|284062764|gb|ADB73702.1| transcription elongation factor GreA [Geodermatophilus obscurus DSM
43160]
Length = 167
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL + RP + I+ R GDL EN Y AAK+ Q E R+ +L
Sbjct: 14 LTQEAHDRLRAELD-QLVAGRPAMAAEINARREEGDLRENGGYHAAKDEQGKQEARIRQL 72
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124
E+++ +A V D T + A G +++ + D + + ++G +E +GL S S
Sbjct: 73 EDLLRKARVGDAPTTA-THAATGTVITIRFRGEDDTEKF-LLGSREIAGTTGLQVYSPES 130
Query: 125 PIARALIGKELGDIISVNAPGG 146
+ A++G E G ++ AP G
Sbjct: 131 ALGSAILGAEPGTTVTYQAPNG 152
>gi|66047490|ref|YP_237331.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
syringae B728a]
gi|63258197|gb|AAY39293.1| Prokaryotic transcription elongation factor GreA/GreB [Pseudomonas
syringae pv. syringae B728a]
Length = 165
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
+S +++ G+ V+ ++ +++ +VG+ +AD +GL++ SP+ RALIG + GD +
Sbjct: 87 AVSTEKVQIGSWVTFADEQD-NRQRVHLVGEDQADAANGLINWGSPLGRALIGAQKGDEV 145
Query: 140 SVNAPGGEKTYEIL 153
P G+++ E+L
Sbjct: 146 LWQRPAGDQSIEVL 159
>gi|315500720|ref|YP_004089521.1| GreA/GreB family elongation factor [Asticcacaulis excentricus CB
48]
gi|315418732|gb|ADU15370.1| GreA/GreB family elongation factor [Asticcacaulis excentricus CB
48]
Length = 159
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+ +++ FG TV + ++ G + ++IVG+ EA+ + G +S SP+ARAL+G+E GD
Sbjct: 90 NANKVVFGCTVEIA-RDDGRVQTFKIVGEDEANPKVGKISYVSPLARALLGREAGD 144
>gi|307140092|ref|ZP_07499448.1| transcription elongation factor GreB [Escherichia coli H736]
Length = 68
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
+E + G ++IVG E + +SI SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 3 IENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYV 60
>gi|306842173|ref|ZP_07474842.1| transcription elongation factor GREB [Brucella sp. BO2]
gi|306287760|gb|EFM59191.1| transcription elongation factor GREB [Brucella sp. BO2]
Length = 156
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135
+ + D + FG TV L + G + + IVG+ EAD G +S +P++ L GK +
Sbjct: 78 LSVPAPDSDVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHVAPVSILLFGKPV 137
Query: 136 GDIISVN 142
GD++ +N
Sbjct: 138 GDVVKIN 144
>gi|306845170|ref|ZP_07477746.1| transcription elongation factor GREB [Brucella sp. BO1]
gi|306274329|gb|EFM56136.1| transcription elongation factor GREB [Brucella sp. BO1]
Length = 156
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Query: 65 ELENIITRAEVIDISTMS--GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+L + R E ++S + D + FG TV L + G + + IVG+ EAD G +S
Sbjct: 65 DLRYWMARRETAELSVPAPGSDVVRFGMTVELENLDDGSTRCWTIVGEDEADPSRGKISH 124
Query: 123 SSPIARALIGKELGDIISVN 142
+P++ L GK +GD++ +N
Sbjct: 125 VAPVSILLFGKPVGDVVKIN 144
>gi|197123173|ref|YP_002135124.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
gi|196173022|gb|ACG73995.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
Length = 149
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAE 65
+T +GF ++ E E RPRI+ + A A GD SENAEY K+L+ L+ R+
Sbjct: 8 ITPEGFRRLAAEHARIWTELRPRIVAEVEAAAALGDRSENAEYIYGKKKLRELDR-RLRF 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
L + V++ R FGA V+ VE+ G ++ ++VG E DV +G
Sbjct: 67 LSEKMDSLSVVEPRAHPDGRAFFGAWVT-VEQEDGQERRVRLVGPDEFDVAAG 118
>gi|330969544|gb|EGH69610.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 165
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
+S +++ G+ V+ ++ +++ +VG+ +AD +GL++ SP+ RALIG + GD +
Sbjct: 87 AVSTEKVQIGSWVTFADEED-NRQRVHLVGEDQADAANGLINWGSPLGRALIGAQKGDEV 145
Query: 140 SVNAPGGEKTYEIL 153
P G+++ E+L
Sbjct: 146 LWQRPAGDQSIEVL 159
>gi|19552211|ref|NP_600213.1| transcription elongation factor GreA [Corynebacterium glutamicum
ATCC 13032]
gi|62389876|ref|YP_225278.1| transcription elongation factor GreA [Corynebacterium glutamicum
ATCC 13032]
gi|21323753|dbj|BAB98379.1| Transcription elongation factor [Corynebacterium glutamicum ATCC
13032]
gi|41325211|emb|CAF19692.1| Transcription elongation factor [Corynebacterium glutamicum ATCC
13032]
Length = 174
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 7/149 (4%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
VDK +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ E
Sbjct: 4 VDKQYITPETKAKLEEELNALIAH-RPAVAAEINERREEGDLKENAGYDAAREMQDQEEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIA-FGATVSL-VEKNSGDKKNYQIVGDQEADVQSGL 119
R+ ++ ++ + + G +A G+ V + + + DK+ + I A L
Sbjct: 63 RIKQISELLANSTTEREGIIEG--VANVGSVVHVYYDGDENDKETFLIGTRAGASENPDL 120
Query: 120 VSIS--SPIARALIGKELGDIISVNAPGG 146
+ S SP+ A++G + GD AP G
Sbjct: 121 ETYSEQSPLGAAILGAQEGDTRQYTAPNG 149
>gi|289628327|ref|ZP_06461281.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289650125|ref|ZP_06481468.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330869003|gb|EGH03712.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 165
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
A+V+ + +S +++ G+ V+ ++ +++ +VG+ +AD GL++ SP+ RALIG
Sbjct: 81 AQVV-TTAISTEKVQIGSWVTFADEED-NRQRVHLVGEDQADAAKGLINWGSPLGRALIG 138
Query: 133 KELGDIISVNAPGGEKTYEIL 153
+ GD + P G ++ EIL
Sbjct: 139 AQKGDEVVWERPAGNQSIEIL 159
>gi|71735306|ref|YP_276410.1| transcription elongation factor GreB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257482138|ref|ZP_05636179.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|71555859|gb|AAZ35070.1| transcription elongation factor GreB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|115265608|dbj|BAF32869.1| transcription elongation factor GreB [Pseudomonas syringae pv.
phaseolicola]
gi|320322617|gb|EFW78710.1| transcription elongation factor GreB [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330598|gb|EFW86577.1| transcription elongation factor GreB [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330873441|gb|EGH07590.1| transcription elongation factor GreB [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330987544|gb|EGH85647.1| transcription elongation factor GreB [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011394|gb|EGH91450.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 165
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
A+V+ + +S +++ G+ V+ ++ +++ +VG+ +AD GL++ SP+ RALIG
Sbjct: 81 AQVV-TTAVSTEKVQIGSWVTFADEED-NRQRVHLVGEDQADAAKGLINWGSPLGRALIG 138
Query: 133 KELGDIISVNAPGGEKTYEIL 153
+ GD + P G ++ EIL
Sbjct: 139 AQKGDEVVWERPAGNQSIEIL 159
>gi|296158435|ref|ZP_06841266.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
gi|295891379|gb|EFG71166.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
Length = 136
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L++++ RA ++D + + + + +LV++ SG+ + +V AD G +++ SP
Sbjct: 34 LDDVLERAVIVDSHEIPANVVTMNSQATLVDETSGEHMTWTVVYPPNADFAHGRLNVFSP 93
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
AL+G + G+ I P G EK ++ ++L+
Sbjct: 94 AGLALLGAKRGERIRFTPPSGTEKVLKLEKILF 126
>gi|91784350|ref|YP_559556.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400]
gi|91688304|gb|ABE31504.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400]
Length = 136
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L++++ RA ++D + + + + +LV++ SG+ + +V AD G +++ SP
Sbjct: 34 LDDVLERAVIVDSHEIPANVVTMNSQATLVDETSGEHMTWTVVYPPNADFAHGRLNVFSP 93
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
AL+G + G+ I P G EK ++ ++L+
Sbjct: 94 AGLALLGAKRGERIRFTPPSGTEKVLKLEKILF 126
>gi|254718708|ref|ZP_05180519.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
83/13]
gi|265983683|ref|ZP_06096418.1| GreA/GreB family elongation factor [Brucella sp. 83/13]
gi|306837756|ref|ZP_07470623.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
NF 2653]
gi|264662275|gb|EEZ32536.1| GreA/GreB family elongation factor [Brucella sp. 83/13]
gi|306407165|gb|EFM63377.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
NF 2653]
Length = 156
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 21/137 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR-MAE 65
VTS G +I EL R+ ++EA G+ S A + +++L+ R AE
Sbjct: 28 VTSAGLKQIDDEL--------ARLQHDLAEANIAGERS--AVARISRDLRYWTARRETAE 77
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + D + FG TV L + G + + IVG+ EAD G +S +P
Sbjct: 78 LS----------VPAPDSDVVRFGMTVELENLDDGSIRRWTIVGEDEADPSRGKISHVAP 127
Query: 126 IARALIGKELGDIISVN 142
++ L GK +GD++ +N
Sbjct: 128 VSILLFGKPVGDVVKIN 144
>gi|296118180|ref|ZP_06836761.1| transcription elongation factor GreA [Corynebacterium ammoniagenes
DSM 20306]
gi|295968738|gb|EFG81982.1| transcription elongation factor GreA [Corynebacterium ammoniagenes
DSM 20306]
Length = 172
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ ++ A G
Sbjct: 27 RPEVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQISEVLANATTEREGIQDG-VA 85
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQSGLVSISSPIARALIGKELGDIISV 141
A G+ V + + K ++G + A D+++ S SP+ A++G + G+
Sbjct: 86 AIGSVVHVYYNGDEEDKETFLIGTRAAASDNKDLET--YSEQSPLGAAILGAQEGETREY 143
Query: 142 NAPGG 146
AP G
Sbjct: 144 TAPNG 148
>gi|26987412|ref|NP_742837.1| GreA/GreB family elongation factor [Pseudomonas putida KT2440]
gi|24982070|gb|AAN66301.1|AE016258_7 transcription elongation factor, putative [Pseudomonas putida
KT2440]
Length = 165
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ A+V+ +T S ++ G+ V V+ ++ Q+VG+ EAD GL++ SP+ RA
Sbjct: 78 VQSAQVVPAAT-SHSKVQIGSRVRFVDAQD-QEQVVQLVGEDEADAGHGLINWGSPLGRA 135
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156
L+G GD + P GE+ E++++L
Sbjct: 136 LLGAGPGDEVVWRRPVGEQVIEVVEIL 162
>gi|330952915|gb|EGH53175.1| transcription elongation factor GreA/GreB [Pseudomonas syringae Cit
7]
Length = 165
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 57/99 (57%), Gaps = 9/99 (9%)
Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
R+A+LE + A+V+ +S +++ G+ V+ ++ +++ +VG+ +AD
Sbjct: 63 RLADLERDLRYFNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQD-NQQRVHLVGEDQAD 120
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
+GL++ SP+ RALIG + GD + P G+++ E+L
Sbjct: 121 AANGLINWGSPLGRALIGAQKGDEVLWQRPAGDQSIEVL 159
>gi|319787977|ref|YP_004147452.1| GreA/GreB family elongation factor [Pseudoxanthomonas suwonensis
11-1]
gi|317466489|gb|ADV28221.1| GreA/GreB family elongation factor [Pseudoxanthomonas suwonensis
11-1]
Length = 143
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAEV+ + D + + V + SG+K +V EADV+ G VS+ +P+ A
Sbjct: 45 LNRAEVLPPEQVPADVVTMHSQVECEDIASGEKHVLTLVYPNEADVEKGRVSVLAPVGSA 104
Query: 130 LIGKELGDIISVNAPGG 146
L+G +G I APGG
Sbjct: 105 LLGLSVGQSIDWQAPGG 121
>gi|213622210|ref|ZP_03374993.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 42
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 31/40 (77%)
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
L+S++SPIAR LIGKE D++ + PGG+ YE+L+V ++
Sbjct: 3 LISVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 42
>gi|187924646|ref|YP_001896288.1| GreA/GreB family elongation factor [Burkholderia phytofirmans PsJN]
gi|187715840|gb|ACD17064.1| GreA/GreB family elongation factor [Burkholderia phytofirmans PsJN]
Length = 136
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L++++ RA ++D + + + + +LV++ SG++ + +V AD G +++ SP
Sbjct: 34 LDDVLERAVIVDSREIPANVVTMNSQATLVDETSGEQMTWTVVYPPNADFAHGRLNVFSP 93
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
AL+G + G+ I P G EK ++ ++L+
Sbjct: 94 AGIALLGAKRGERIRFTPPSGTEKVLKLEKILY 126
>gi|313497038|gb|ADR58404.1| GreA/GreB family elongation factor [Pseudomonas putida BIRD-1]
Length = 165
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ A+V+ +T S ++ G+ V V+ ++ Q+VG+ EAD GL++ SP+ RA
Sbjct: 78 VQSAQVVPAAT-SHSKVQIGSRVRFVDAQD-QEQLVQLVGEDEADAGRGLINWGSPLGRA 135
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156
L+G GD + P GE+ E++++L
Sbjct: 136 LLGAGPGDEVVWQRPVGEQVIEVVEIL 162
>gi|330961596|gb|EGH61856.1| transcription elongation factor GreB [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 165
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
S +++ G+ V+ +++ +++ +VG+ +AD +GL++ SP+ RALIG + GD +
Sbjct: 89 STEKVQIGSWVTFADEDD-NRQRVHLVGEDQADAANGLINWGSPLGRALIGAQKGDEVVW 147
Query: 142 NAPGGEKTYEIL 153
P G+ + E+L
Sbjct: 148 QRPAGDLSIEVL 159
>gi|302187999|ref|ZP_07264672.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
syringae 642]
Length = 165
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 56/99 (56%), Gaps = 9/99 (9%)
Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
R+A+LE + A+V+ +S +++ G+ V+ ++ +++ +VG+ +AD
Sbjct: 63 RLADLERDLRYFNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQD-NQQRVHLVGEDQAD 120
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
GL++ SP+ RALIG + GD + P G+++ E+L
Sbjct: 121 AAKGLINWGSPLGRALIGAQKGDEVLWQRPAGDQSIEVL 159
>gi|239943845|ref|ZP_04695782.1| transcription elongation factor GreA [Streptomyces roseosporus NRRL
15998]
gi|239990301|ref|ZP_04710965.1| transcription elongation factor GreA [Streptomyces roseosporus NRRL
11379]
gi|291447308|ref|ZP_06586698.1| transcription elongation factor [Streptomyces roseosporus NRRL
15998]
gi|291350255|gb|EFE77159.1| transcription elongation factor [Streptomyces roseosporus NRRL
15998]
Length = 165
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 2/141 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNQLKAELEYLSGPARTEIAVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V + G + G V++ + + D + + + A + S SP
Sbjct: 71 TQLLEHAKVGEAPADDG-VVEPGMVVTIAFDGDEDDTLTFLLASREYASTEIETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGG 146
+ + GK GD P G
Sbjct: 130 LGLGVNGKRTGDDADYELPNG 150
>gi|295677010|ref|YP_003605534.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
gi|295436853|gb|ADG16023.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
Length = 134
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 42 DLSENAEYQAAK-ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
D++ +Y AA +LQ++ L++++ RA ++D + D + + +L++ SG
Sbjct: 14 DVTRLEKYAAANAKLQHM-------LDDVLERAVIVDSHDIPADVVTMNSQATLIDTASG 66
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148
++ + +V AD G +++ SP AL+G G+ I P G++
Sbjct: 67 EQMTWTVVYPPNADFAQGRLNVFSPAGLALLGARRGESIRFTPPSGDQ 114
>gi|147676876|ref|YP_001211091.1| hypothetical protein PTH_0541 [Pelotomaculum thermopropionicum SI]
gi|146272973|dbj|BAF58722.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
Length = 150
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%)
Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
E +NL E + L+ +I A I+ + G+ V + + + Y IV +
Sbjct: 42 EFENLIENYIQRLDRLIRNASKSKIADNKVPFVTIGSEVEIQNLSEQEVYKYFIVNPFYS 101
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
+V+ G +S SP+ ++L+ K++GD + V APGG Y+I
Sbjct: 102 EVREGHISFLSPVGKSLLLKKVGDEVEVKAPGGVFRYKI 140
>gi|297617314|ref|YP_003702473.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus
DSM 12680]
gi|297145151|gb|ADI01908.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus
DSM 12680]
Length = 150
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 59/102 (57%), Gaps = 6/102 (5%)
Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVE-KNSGDKKN--YQIVGD 110
E + L E + +++ +I + + S+ +G+++ F S VE +N DK+ Y+I+
Sbjct: 42 EFEILLENYIKQVDELIRK---VKKSSKAGNKLPFVTIGSEVEIQNLSDKETHKYRIITP 98
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
V+ G +S SP+ ++L+ +++GD+I V APGG Y+I
Sbjct: 99 FRGSVKDGDISYLSPVGKSLLLRKVGDVIEVKAPGGIFHYKI 140
>gi|325105687|ref|YP_004275341.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145]
gi|324974535|gb|ADY53519.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145]
Length = 126
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 54/99 (54%)
Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
NL++ +LE + A+V+ + + GD + + V + ++ +Q+V QEA+++
Sbjct: 25 NLSDFNKQKLEKELNEAKVLADAELPGDVVRLESVVKIESVDNNKTFTFQLVMPQEANMK 84
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S+ +PI AL+G + G I+ P G K ++I+ V
Sbjct: 85 KQKLSVFAPIGIALLGYQTGTIVEWEMPDGVKKFKIIDV 123
>gi|149279968|ref|ZP_01886094.1| nucleoside diphosphate kinase regulator protein, putative
[Pedobacter sp. BAL39]
gi|149229348|gb|EDM34741.1| nucleoside diphosphate kinase regulator protein, putative
[Pedobacter sp. BAL39]
Length = 129
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 48 EYQAAKEL---QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104
+YQ K N + G M+ L ++RA ++ D I +TV + ++++G+
Sbjct: 15 DYQLLKPYFTKTNPHAGEMS-LSAELSRAVILSNEEFPSDAIRLNSTVRIQDESTGEIME 73
Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
IV Q A+++ +S+ +PIA ALIG GD + P G K + I +V
Sbjct: 74 LIIVLPQHANIKEKKISVLTPIAAALIGFRQGDAVQWKVPAGLKNFRITEV 124
>gi|163757146|ref|ZP_02164248.1| transcription elongation factor [Kordia algicida OT-1]
gi|161322874|gb|EDP94221.1| transcription elongation factor [Kordia algicida OT-1]
Length = 139
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 40 YGDL-SENAEYQAAKELQNLN--------EGRMAELENIITRAEVIDISTMSGDRIAFGA 90
YG L E EY K + N++ + + +L + A ++D S M D I F +
Sbjct: 3 YGSLILEKKEYVYLKRILNISGYTGDFEVQNSLLQLNKELKNALIVDESEMPNDIIRFNS 62
Query: 91 TVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148
VS+ +N+ KK QIV E D++ +SI +P+ +LIG+ D I + GE+
Sbjct: 63 IVSISAENNW-KKTLQIVIPTEVDIEKNKISILTPLGASLIGRSSNDNIQCTSNSGEQ 119
>gi|154246865|ref|YP_001417823.1| transcription elongation factor regulatory protein [Xanthobacter
autotrophicus Py2]
gi|154160950|gb|ABS68166.1| GreA/GreB family elongation factor [Xanthobacter autotrophicus Py2]
Length = 158
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
+ FGATV+ + + G ++ ++IVG+ EAD G VS SP+A+AL+ K +GD+
Sbjct: 93 VQFGATVT-ISREDGRRQVFRIVGEDEADPAKGSVSYVSPLAKALMSKVVGDV 144
>gi|330873471|gb|EGH07620.1| transcription elongation factor GreB [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 165
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
+S +++ G+ ++ ++ ++ Q+VG+ +AD GL++ SP+ AL+G + GD +
Sbjct: 88 LSTEKVQIGSWITFTDEEDNHQR-VQLVGEDQADATRGLINWGSPLGSALLGAQKGDEVM 146
Query: 141 VNAPGGEKTYEIL 153
P G++T E+L
Sbjct: 147 WKRPAGDQTIEVL 159
>gi|115265559|dbj|BAF32821.1| transcription elongation factor [Pseudomonas syringae pv.
actinidiae]
gi|330965293|gb|EGH65553.1| transcription elongation factor GreB [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 165
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
+S +++ G+ ++ ++ ++ Q+VG+ +AD GL++ SP+ AL+G + GD +
Sbjct: 88 LSTEKVQIGSWITFTDEEDNHQR-VQLVGEDQADATRGLINWGSPLGSALLGAQKGDEVM 146
Query: 141 VNAPGGEKTYEIL 153
P G++T E+L
Sbjct: 147 WKRPAGDQTIEVL 159
>gi|158426269|ref|YP_001527561.1| transcription elongation factor regulatory protein [Azorhizobium
caulinodans ORS 571]
gi|158333158|dbj|BAF90643.1| transcription elongation factor protein [Azorhizobium caulinodans
ORS 571]
Length = 159
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
+ FG TV+L+ ++ ++ ++IVG+ EAD G VS SP+A AL+GK +GD+ V
Sbjct: 94 VQFGVTVTLLREDD-RRQTFRIVGEDEADPAQGSVSYVSPLAAALMGKGVGDVALV 148
>gi|38233521|ref|NP_939288.1| transcription elongation factor GreA [Corynebacterium diphtheriae
NCTC 13129]
gi|38199781|emb|CAE49444.1| transcription elongation factor [Corynebacterium diphtheriae]
Length = 173
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 66/128 (51%), Gaps = 12/128 (9%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ I+ + + G
Sbjct: 27 HRPVVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQISEILANSTTERAGIVEG-- 84
Query: 86 IAFGATVSLVEKNSGDKKNYQ--IVGDQEA-----DVQSGLVSISSPIARALIGKELGDI 138
+A +V V N GDK + + ++G + A D+++ S SP+ A++G + G+
Sbjct: 85 VAHIGSVVHVYYN-GDKNDKETFLIGTRAAASDNKDLET--YSEQSPLGAAVVGAQEGET 141
Query: 139 ISVNAPGG 146
+AP G
Sbjct: 142 RQYSAPNG 149
>gi|66575033|gb|AAY50443.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. campestris str. 8004]
Length = 135
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
N A L + + RA V+ + GD + + + ++ G++ +V EADVQ
Sbjct: 26 NHPAAAALADELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHS 85
Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146
+S+ +P AL+G +G I APGG
Sbjct: 86 RISVLAPAGTALLGLSVGQSIDWRAPGG 113
>gi|148545953|ref|YP_001266055.1| GreA/GreB family elongation factor [Pseudomonas putida F1]
gi|148510011|gb|ABQ76871.1| GreA/GreB family elongation factor [Pseudomonas putida F1]
Length = 165
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ A+V+ +T S ++ G+ V V+ + ++ ++VG+ EAD GL++ SP+ RA
Sbjct: 78 VQSAQVVPAAT-SHSKVQIGSRVRFVDTHD-QEQVVRLVGEDEADAGHGLINWGSPLGRA 135
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156
L+G GD + P GE+ E++++L
Sbjct: 136 LLGAGPGDEVVWRRPVGEQVIEVVEIL 162
>gi|77761289|ref|YP_244463.2| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. campestris str. 8004]
Length = 143
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%)
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
N A L + + RA V+ + GD + + + ++ G++ +V EADVQ
Sbjct: 34 NHPAAAALADELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHS 93
Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146
+S+ +P AL+G +G I APGG
Sbjct: 94 RISVLAPAGTALLGLSVGQSIDWRAPGG 121
>gi|296447424|ref|ZP_06889349.1| GreA/GreB family elongation factor [Methylosinus trichosporium
OB3b]
gi|296255044|gb|EFH02146.1| GreA/GreB family elongation factor [Methylosinus trichosporium
OB3b]
Length = 155
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ FG V +VE G +++Y++VG+ EAD GL+ +P+A+ L+GK +GD V
Sbjct: 90 VRFGHRV-VVEDEKGQRRSYRLVGEDEADPSKGLIPYVAPLAKELLGKSVGDSAEV---- 144
Query: 146 GEKTYEILQV 155
G + IL +
Sbjct: 145 GRHSATILDI 154
>gi|84394549|ref|ZP_00993255.1| transcription elongation factor GreA [Vibrio splendidus 12B01]
gi|84374818|gb|EAP91759.1| transcription elongation factor GreA [Vibrio splendidus 12B01]
Length = 51
Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK 53
++K+P+T +G K++ EL R + RP I AI EAR GDL ENAEY AA+
Sbjct: 1 MEKVPMTVRGAQKLRDELD-RLLKLRPIISAAIGEARELGDLKENAEYHAAR 51
>gi|323135884|ref|ZP_08070967.1| GreA/GreB family elongation factor [Methylocystis sp. ATCC 49242]
gi|322398975|gb|EFY01494.1| GreA/GreB family elongation factor [Methylocystis sp. ATCC 49242]
Length = 155
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 22/132 (16%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G ++I++EL R+ I +A A D +A A ++L+ R +
Sbjct: 30 VTPEGLEQIERELH--------RLHGEIEKATANDD--NHALALAQRDLRYWTARRAS-- 77
Query: 67 ENIITRAEVI-DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
AEVI I+ S + FG V +VE G+++ +++VG+ EAD GL+ +P
Sbjct: 78 ------AEVIRPIADHS--HVRFGHRV-VVELEGGERRAFRLVGEDEADPAKGLIPYVAP 128
Query: 126 IARALIGKELGD 137
+A AL+GK +GD
Sbjct: 129 LATALMGKTVGD 140
>gi|288940256|ref|YP_003442496.1| GreA/GreB family elongation factor [Allochromatium vinosum DSM 180]
gi|288895628|gb|ADC61464.1| GreA/GreB family elongation factor [Allochromatium vinosum DSM 180]
Length = 137
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 52 AKELQNLNEGR-------MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104
A+ L+NL E M ELE + RAEV+D M + ++ +TV ++ +
Sbjct: 14 AERLENLIESLPRNAFPGMDELEAELARAEVVDPREMPPNVVSMNSTVRFRVMSTNEAFT 73
Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+V ++ D G +SI +P+ AL+G GD I PGG
Sbjct: 74 LTLVYPKDMDASGGKISILAPVGSALLGLSSGDEIEWPKPGG 115
>gi|227832751|ref|YP_002834458.1| Transcription elongation factor [Corynebacterium aurimucosum ATCC
700975]
gi|262182759|ref|ZP_06042180.1| transcription elongation factor GreA [Corynebacterium aurimucosum
ATCC 700975]
gi|227453767|gb|ACP32520.1| Transcription elongation factor [Corynebacterium aurimucosum ATCC
700975]
Length = 173
Score = 47.8 bits (112), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
+ RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++ ++ + + G
Sbjct: 26 DHRPVVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQISEVLANSTTERTAVQEG- 84
Query: 85 RIAFGATVSLVEKNSGDKKNYQ--IVGDQEA-----DVQSGLVSISSPIARALIGKELGD 137
+A +V V N GD+++ + ++G + A D+++ S SP+ AL+G G+
Sbjct: 85 -VAHIGSVVHVYYN-GDEEDRETFLIGTRAAASDNKDLET--YSEQSPLGAALLGAAEGE 140
Query: 138 IISVNAPGG 146
AP G
Sbjct: 141 TREYTAPNG 149
>gi|332981932|ref|YP_004463373.1| GreA/GreB family elongation factor [Mahella australiensis 50-1 BON]
gi|332699610|gb|AEE96551.1| GreA/GreB family elongation factor [Mahella australiensis 50-1 BON]
Length = 138
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ G+TV + + + + +V E++ G +S SPI ++L+ K+ G+I+SV P
Sbjct: 67 VIIGSTVKVRDIDDDYTITFTLVCPHESNPVKGCISYLSPIGKSLLLKKAGEIVSVVTPN 126
Query: 146 GEKTYEILQV 155
GE YEIL++
Sbjct: 127 GEVRYEILEI 136
>gi|254467874|ref|ZP_05081280.1| GreA/GreB family elongation factor [beta proteobacterium KB13]
gi|207086684|gb|EDZ63967.1| GreA/GreB family elongation factor [beta proteobacterium KB13]
Length = 164
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+++ FGA V L+++N K +QIVG+ EAD++ +S SP+A+ LIG +GD
Sbjct: 91 NNKVLFGAHVILIDENDEAYK-FQIVGEDEADIKQNKLSYVSPLAKELIGSLIGD 144
>gi|299783423|gb|ADJ41421.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Lactobacillus fermentum CECT 5716]
Length = 69
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
G ++ E + ++Y IVG+ E+D SG +S SP+A+ L+G ++GD + + P G
Sbjct: 1 MGREITFQELPDEEPESYTIVGESESDPLSGKISNESPMAKGLLGHKVGDTVEIEIPNGS 60
Query: 148 KTYEILQV 155
+IL V
Sbjct: 61 MKVKILSV 68
>gi|282865260|ref|ZP_06274312.1| transcription elongation factor GreA [Streptomyces sp. ACTE]
gi|282559733|gb|EFB65283.1| transcription elongation factor GreA [Streptomyces sp. ACTE]
Length = 165
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 7/151 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNQLKAELEYLSGPARTEISVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE---ADVQSGLVSIS 123
++ A+V + G + G V++ D ++ +E D+++ S
Sbjct: 71 TQLLEHAKVGEPPADDG-VVEPGMVVTIAFDGDPDDTLTFLLASREYATGDIET--YSPQ 127
Query: 124 SPIARALIGKELGDIISVNAPGGEK-TYEIL 153
SP+ + GK +G+ P G+K T +IL
Sbjct: 128 SPLGTGVNGKRMGEEAEYELPNGKKATVKIL 158
>gi|154499214|ref|ZP_02037592.1| hypothetical protein BACCAP_03209 [Bacteroides capillosus ATCC
29799]
gi|150272054|gb|EDM99280.1| hypothetical protein BACCAP_03209 [Bacteroides capillosus ATCC
29799]
Length = 163
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Query: 18 ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVID 77
+LR +++++ A A A GD SENAE+Q A + + L N + +
Sbjct: 31 QLRLKEEQD------AAQRASAMGDRSENAEWQIANDNIARYTVSIMSLVNTLDTYKKFS 84
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
S ++ G+T+ +V++ +I + + G +S ++P+ A++GK G
Sbjct: 85 ASYTPTGKVMVGSTLKVVDRRHNSTLYIKIYPAGLGNAKIGAISTATPLGSAVLGKTAGT 144
Query: 138 IISVNAPGGEKTYEILQVL 156
+ V AP G+ Y I +VL
Sbjct: 145 EVIVKAPLGDIPYYIEEVL 163
>gi|182412842|ref|YP_001817908.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
gi|177840056|gb|ACB74308.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
Length = 204
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 13/133 (9%)
Query: 36 EARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIS-----TMSGDRIAFGA 90
EA + GDL EN ++AAKE + +M L+ + R ++ T S D + G
Sbjct: 49 EAHSQGDLRENFGFKAAKEAIRAVDRKMMALDRFVARNTFKEVDPAAWLTKSTDTLQLGH 108
Query: 91 TVSLVEKNSGDKKNYQIV------GDQEADVQSGLVSI--SSPIARALIGKELGDIISVN 142
++ +++ K+ + G+ +D SGL + +SP+A A++G G V
Sbjct: 109 VTTIEKQDVTTKRTHSFTFLVTTYGETASDPDSGLECLPHTSPLATAVLGLAAGAQTKVM 168
Query: 143 APGGEKTYEILQV 155
P GE ++ +
Sbjct: 169 LPAGESLLTLISI 181
>gi|86132956|ref|ZP_01051546.1| transcription elongation factor GreA/GreB family protein [Dokdonia
donghaensis MED134]
gi|85816474|gb|EAQ37662.1| transcription elongation factor GreA/GreB family protein [Dokdonia
donghaensis MED134]
Length = 167
Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 16/152 (10%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VTS G ++++EL + L E E + + L LN R L
Sbjct: 31 VTSHGLTQLKEELSTLDNK--------------ISTLDETDERERRRALAVLNGKRNLLL 76
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I + A ++D G+ I FGATV+ QIVG EA V+ ++ ++PI
Sbjct: 77 ERIQS-ARLLDHIKDEGE-IRFGATVTYTIAGMPKPITIQIVGVDEASVKDKKIAFTAPI 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARALIGK++ + + EK I + ++
Sbjct: 135 ARALIGKKVDETTTFQLGNEEKKLTIKNIAYV 166
>gi|299140453|ref|ZP_07033593.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
gi|298597567|gb|EFI53765.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
Length = 125
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++++E ++ ++RP + ++ A + GD SENA+YQ AK +GR+ L
Sbjct: 22 ITPGGLERLKEEHQFLLNKDRPAVAVVVAWAASNGDRSENADYQYAKRRLRQIDGRIRHL 81
Query: 67 ENIITRAEVIDI----STMSGDRIAFGATV 92
+ AEV+D S + ++ FGATV
Sbjct: 82 SKRMEAAEVVDPEAPRSGLRATKVYFGATV 111
>gi|325528774|gb|EGD05833.1| GreA/GreB family elongation factor [Burkholderia sp. TJI49]
Length = 132
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ RA+++ + + + + ++L+++ + ++ + IV A+++ G +++ SP
Sbjct: 30 LDTLLERADIVRPDAIKANVVTMNSQITLLDETTQEQATWTIVYPDAANLELGRLNVFSP 89
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+ AL+G + G ++ V P G EK ++ ++++
Sbjct: 90 VGMALLGTQRGQLVKVTQPSGAEKLMKVAEIVF 122
>gi|91975331|ref|YP_567990.1| transcription elongation factor GreA/GreB region [Rhodopseudomonas
palustris BisB5]
gi|91681787|gb|ABE38089.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
BisB5]
Length = 138
Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
I RAE++ S + I G+ V+ + SG ++ +V + ADV++ +SI +PI A
Sbjct: 44 IERAEILPDSQLLPGLIMMGSEVTFRDDISGQERCVTLVYPEAADVEANKISIITPIGAA 103
Query: 130 LIGKELGDIISVNAPGG 146
LIG G I PGG
Sbjct: 104 LIGLSAGQTIEFQTPGG 120
>gi|300781602|ref|ZP_07091456.1| transcription elongation factor GreA [Corynebacterium genitalium
ATCC 33030]
gi|300533309|gb|EFK54370.1| transcription elongation factor GreA [Corynebacterium genitalium
ATCC 33030]
Length = 174
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP I I+E R GDL ENA Y AA+E Q+ E R+ ++ ++ + + G +
Sbjct: 28 RPAIAAEINERREEGDLKENAGYDAAREQQDQEEARIKQISELLANSTTERTGVVEGMAV 87
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSG---LVSISSPIARALIGKELGDIISVNA 143
G+ V + + K ++G + A + S SP+ A++G G+ + A
Sbjct: 88 -VGSVVHVYYNGDENDKETFLIGTRAASTDNKDLETYSEQSPLGAAVLGATEGETRTYTA 146
Query: 144 PGG 146
P G
Sbjct: 147 PNG 149
>gi|254254276|ref|ZP_04947593.1| Prokaryotic transcription elongation factor GreA/GreB [Burkholderia
dolosa AUO158]
gi|124898921|gb|EAY70764.1| Prokaryotic transcription elongation factor GreA/GreB [Burkholderia
dolosa AUO158]
Length = 132
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L+ ++ RA+++ + + + + ++LV++ + ++ + IV A+++ G +++
Sbjct: 28 AMLDTLLERADIVRPDAIKANVVTMNSQITLVDEATQEQATWTIVYPDAANLELGRLNVF 87
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
SP+ AL+G + G ++ V P G EK ++ ++++
Sbjct: 88 SPVGMALLGTQRGQMVKVMQPSGIEKLMKVAEIVF 122
>gi|239833979|ref|ZP_04682307.1| nucleoside diphosphate kinase regulator [Ochrobactrum intermedium
LMG 3301]
gi|239822042|gb|EEQ93611.1| nucleoside diphosphate kinase regulator [Ochrobactrum intermedium
LMG 3301]
Length = 142
Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 52 AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
++ L+ + E MAEL+ RA+V+ + D I G+TV N G ++ +V
Sbjct: 29 SERLEEIAEELMAELD----RAKVVPAKRLPQDVIHMGSTVEF-RSNDGQQRRVALVYPG 83
Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
EAD+ G +SI +PI ALIG G IS A G K +E+
Sbjct: 84 EADIAQGKISILTPIGTALIGLAPGQSISWTARDG-KQHEL 123
>gi|182436357|ref|YP_001824076.1| transcription elongation factor GreA [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326776981|ref|ZP_08236246.1| transcription elongation factor GreA [Streptomyces cf. griseus
XylebKG-1]
gi|178464873|dbj|BAG19393.1| putative transcription elongation factor [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326657314|gb|EGE42160.1| transcription elongation factor GreA [Streptomyces cf. griseus
XylebKG-1]
Length = 165
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 2/141 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +++++ EL R I I+ AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQEAYNQLKAELEHLSGPARTEIAVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ A+V + G + G V++ + + D + + + A + S SP
Sbjct: 71 TQLLEHAKVGEAPADDG-VVEPGMVVTIAFDGDENDTLTFLLASREYASTEIETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGG 146
+ + GK GD P G
Sbjct: 130 LGLGVNGKRTGDDADYELPNG 150
>gi|261341234|ref|ZP_05969092.1| regulator of nucleoside diphosphate kinase [Enterobacter
cancerogenus ATCC 35316]
gi|288316534|gb|EFC55472.1| regulator of nucleoside diphosphate kinase [Enterobacter
cancerogenus ATCC 35316]
Length = 136
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP+II +A L E EY + LNE EL+ RA++ +M D +
Sbjct: 3 RPKIIINELDAERIDRLLEKPEYASLPVADALNE----ELD----RAQMCTPESMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V+ +G++ +V + + +S+ +P+ AL+G GD I + PGG
Sbjct: 55 TMNSQVTFRNLTTGEELTRTLVYPAQMTDSATQLSVLAPVGAALLGLRTGDTIHWDLPGG 114
Query: 147 EKTY-EILQVLW 157
T+ E+L +L+
Sbjct: 115 ASTHLEVLALLY 126
>gi|294665206|ref|ZP_06730505.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
gi|292605029|gb|EFF48381.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
Length = 146
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+
Sbjct: 39 AALSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVL 98
Query: 124 SPIARALIGKELGDIISVNAPGG 146
+P+ AL+G +G I P G
Sbjct: 99 APVGSALLGLSIGQSIDWRTPDG 121
>gi|149926906|ref|ZP_01915165.1| nucleoside diphosphate kinase regulator [Limnobacter sp. MED105]
gi|149824458|gb|EDM83676.1| nucleoside diphosphate kinase regulator [Limnobacter sp. MED105]
Length = 122
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%)
Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
+ LN EL + AE I + D + + ++VE SG + +A+
Sbjct: 9 ISKLNAPFPPELNAALDNAEFIKPQDIPADVVTMNSLFTIVETESGSTNKLMLCYPSDAE 68
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
G +S+ SP+ +L+G++ G + P GE+ + +++
Sbjct: 69 PAKGYISVLSPVGASLLGRKAGTVAQWATPNGEQHFAVVK 108
>gi|289675905|ref|ZP_06496795.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
syringae FF5]
Length = 123
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
R+A+LE + A+V+ +S +++ G+ V+ ++ +++ +VG+ +AD
Sbjct: 21 RLADLERDLRYFNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQD-NQQRVHLVGEDQAD 78
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
G ++ SP+ RALIG + GD + P G+++ E+L
Sbjct: 79 AAKGQINWGSPLGRALIGAQKGDEVLWQRPAGDQSIEVL 117
>gi|294626142|ref|ZP_06704749.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|292599591|gb|EFF43721.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
Length = 146
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+
Sbjct: 39 AALSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVL 98
Query: 124 SPIARALIGKELGDIISVNAPGG 146
+P+ AL+G +G I P G
Sbjct: 99 APVGSALLGLSVGQSIDWRTPDG 121
>gi|260062078|ref|YP_003195158.1| nucleoside diphosphate kinase regulator [Robiginitalea biformata
HTCC2501]
gi|88783640|gb|EAR14811.1| nucleoside diphosphate kinase regulator [Robiginitalea biformata
HTCC2501]
Length = 139
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 38 RAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEK 97
+ Y +LS A Y A Q++ + + EL++ A+++D + M D + F + +++ +
Sbjct: 17 KRYVNLS--AHYHDATLWQSI-QKLLTELDS----AKIVDEAEMQNDVVRFHSIITVTSE 69
Query: 98 NSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
N G + Q+V E DV +SI +P+ AL G GD +S P G K I +V
Sbjct: 70 N-GWSRRVQLVLPPERDVSKDKISILTPMGIALFGYAEGDTVSWEFPSGPKRLRIEKV 126
>gi|302389044|ref|YP_003824865.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM
16646]
gi|302199672|gb|ADL07242.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM
16646]
Length = 150
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
Query: 52 AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV--- 108
A+EL++L + + ++ I+ + D + S + + V + + + + N+++V
Sbjct: 41 ARELEHLLDNYIKFMDEFISSVQQEDTADESFPYVVINSRVQVQDIENDETYNFRVVLPS 100
Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
G+ +D + VS+ SP+ ++L+ K+ G+ + VNAPGG YEI + +
Sbjct: 101 GNIASDPEIYSVSVLSPVGKSLLLKKPGEKVQVNAPGGMFLYEIKAIYF 149
>gi|85715886|ref|ZP_01046864.1| transcription elongation factor GreA/GreB region [Nitrobacter sp.
Nb-311A]
gi|85697293|gb|EAQ35173.1| transcription elongation factor GreA/GreB region [Nitrobacter sp.
Nb-311A]
Length = 150
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 18/119 (15%)
Query: 55 LQNLNEGRMAE-------LENIITRAEVID-----ISTMSGDR-----IAFGATVSLVEK 97
L++L E M + L I RAE+I I +SG R + + V+ V+
Sbjct: 22 LRHLAEAAMEKYPTTAEFLAREIDRAEIIPADRSIIDDISGLRRKINLVTMQSEVTFVDD 81
Query: 98 NSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQV 155
SG+K+ +V ++ADV +G +SI SPI ALIG G I P GG ++ ++ V
Sbjct: 82 ISGEKRKVVLVYPEDADVDAGKISILSPIGAALIGLSTGQSIEFQTPSGGWRSLTVMAV 140
>gi|227548191|ref|ZP_03978240.1| transcription elongation factor GreA [Corynebacterium
lipophiloflavum DSM 44291]
gi|227079752|gb|EEI17715.1| transcription elongation factor GreA [Corynebacterium
lipophiloflavum DSM 44291]
Length = 174
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP I I+E R GDL ENA Y AA+E Q+ E R+ ++ I+ A + G +
Sbjct: 28 RPVIAAEINERREEGDLKENAGYDAAREQQDQEEARIKQISEILANATTERSGVIEG--V 85
Query: 87 A-FGATVSLVEKNSGDKKNYQIVGDQEADVQSG---LVSISSPIARALIGKELGDIISVN 142
A G+ V + K ++G + A + S +SP+ A++G G+ + +
Sbjct: 86 AQVGSVVHVFYNGDESDKETFLIGTRAASTGNKDLETYSENSPLGAAVVGASEGETRTYS 145
Query: 143 APGG 146
AP G
Sbjct: 146 APNG 149
>gi|148550773|ref|YP_001260212.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
gi|148503192|gb|ABQ71445.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
Length = 137
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP I SEA DL+ +A A L +++ + EL RA + + GD +
Sbjct: 9 RPPIHMIDSEADILADLATSA----ATRLPQVSQLLLEEL----GRATIHKADRIPGDIV 60
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG-DIISVNAPG 145
+ V + SG + YQ+V ++AD+ G +SI +P+ LIG G I+ + G
Sbjct: 61 TMHSVVQFTDAASGKEHRYQLVYPKDADIAEGRISILTPVGAGLIGLRAGQSILWPDRDG 120
Query: 146 GEKTYEILQV 155
E+ I +V
Sbjct: 121 HERLLTIAKV 130
>gi|39933943|ref|NP_946219.1| putative nucleoside diphosphate kinase regulator [Rhodopseudomonas
palustris CGA009]
gi|192289362|ref|YP_001989967.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
TIE-1]
gi|39647790|emb|CAE26310.1| putative nucleoside diphosphate kinase regulator [Rhodopseudomonas
palustris CGA009]
gi|192283111|gb|ACE99491.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
TIE-1]
Length = 134
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 24 QEERPRIIKAISEARAYGDLSENA--EYQAAKELQNLNEGRMAELENIITRAEVI-DIST 80
+ +RP I +A G L+E A Y A + L + RA V D
Sbjct: 6 RTQRPPITIRSRDAERLGQLAEAAAQRYPATADF----------LAGEVARANVAPDHDP 55
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
+ G + + ++ + +G +K+ +V EADV++G +S+ +PI ALIG +G IS
Sbjct: 56 LPGI-VCMESALTFRDDTTGKEKHVTLVYPTEADVEAGRISVLTPIGAALIGLSVGQSIS 114
Query: 141 VNAPGGEK 148
P GE+
Sbjct: 115 FETPSGER 122
>gi|172063609|ref|YP_001811260.1| GreA/GreB family elongation factor [Burkholderia ambifaria MC40-6]
gi|171996126|gb|ACB67044.1| GreA/GreB family elongation factor [Burkholderia ambifaria MC40-6]
Length = 132
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L+ ++ RA+++ + + + + ++L+++ S ++ + IV A+++ G +++
Sbjct: 28 AMLDTLLERADIVQPDAIKANVVTMNSQITLLDEASQEQTTWTIVYPDAANLELGRLNVF 87
Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
SP+ AL+G + G ++ V P G EK ++ +++
Sbjct: 88 SPVGMALLGTQRGQLVKVLQPSGAEKLMKVAAIVF 122
>gi|92118882|ref|YP_578611.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14]
gi|91801776|gb|ABE64151.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14]
Length = 141
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 55 LQNLNEGRMAE-------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107
L++L E M + L I RAE+I + + + + V+ ++ SG K+ +
Sbjct: 22 LRHLAEAAMEKYPATAEFLAREIDRAEIIPADRSARNIVTMQSEVTFIDDISGQKRTVIL 81
Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQV 155
V ++ADV +G +SI +PI ALIG G I P GG ++ ++ V
Sbjct: 82 VYPEDADVDAGKISILTPIGAALIGLSAGQSIEFQTPSGGWRSLTVIAV 130
>gi|115358874|ref|YP_776012.1| GreA/GreB family elongation factor [Burkholderia ambifaria AMMD]
gi|170700327|ref|ZP_02891339.1| GreA/GreB family elongation factor [Burkholderia ambifaria
IOP40-10]
gi|115284162|gb|ABI89678.1| GreA/GreB family elongation factor [Burkholderia ambifaria AMMD]
gi|170134761|gb|EDT03077.1| GreA/GreB family elongation factor [Burkholderia ambifaria
IOP40-10]
Length = 132
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L+ ++ RA+++ + + + + ++L+++ S ++ + IV A+++ G +++
Sbjct: 28 AMLDTLLERADIVQPDAIKANVVTMNSQITLLDEASQEQATWTIVYPDAANLELGRLNVF 87
Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
SP+ AL+G + G ++ V P G EK ++ +++
Sbjct: 88 SPVGMALLGTQRGQLVKVLQPSGAEKLMKVAAIVF 122
>gi|225022977|ref|ZP_03712169.1| hypothetical protein CORMATOL_03023 [Corynebacterium matruchotii
ATCC 33806]
gi|305681896|ref|ZP_07404700.1| transcription elongation factor GreA [Corynebacterium matruchotii
ATCC 14266]
gi|224944200|gb|EEG25409.1| hypothetical protein CORMATOL_03023 [Corynebacterium matruchotii
ATCC 33806]
gi|305658369|gb|EFM47872.1| transcription elongation factor GreA [Corynebacterium matruchotii
ATCC 14266]
Length = 175
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ E R+ +
Sbjct: 9 ITPESKAKLEEELNALIAH-RPVVAAEINERREEGDLKENAGYDAAREMQDQEEARIKHI 67
Query: 67 ENIITRAEVIDISTMSGDRIAF-GATVSLVEKNSGDKKNYQIVGDQEA-----DVQSGLV 120
I+ + + G +A G+ V + + K ++G + A D+++
Sbjct: 68 SEILANSTTERSGIIEG--VAHVGSVVHVYYNGKPENKETFLIGTRAAASDNKDLET--Y 123
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S SP+ A++G G+ AP G
Sbjct: 124 SEQSPLGAAILGAHEGETREYTAPNG 149
>gi|182414436|ref|YP_001819502.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
gi|177841650|gb|ACB75902.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
Length = 143
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 54/96 (56%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
G ++L + ++R V+D + + I G+TV + + SG+ + Y +V ++A+V +
Sbjct: 26 PGTPSQLRSELSRGVVVDATALPPTAIRLGSTVEIEDLESGEIETYTLVLPEQANVDARK 85
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S+ +PI A+IG G ++ + PGG + I +V
Sbjct: 86 LSVLAPIGTAVIGCLQGAEVAWSTPGGTRRLRIGRV 121
>gi|330937778|gb|EGH41648.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
pisi str. 1704B]
gi|330981878|gb|EGH79981.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 165
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
R+A+LE + A+V+ +S +++ G+ V+ ++ +++ +VG+ +AD
Sbjct: 63 RLADLERDLRYFNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQD-NQQRVHLVGEDQAD 120
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
G ++ SP+ RALIG + GD + P G+++ E+L
Sbjct: 121 AAKGQINWGSPLGRALIGAQKGDEVLWQRPAGDQSIEVL 159
>gi|171321848|ref|ZP_02910748.1| GreA/GreB family elongation factor [Burkholderia ambifaria MEX-5]
gi|171092867|gb|EDT38120.1| GreA/GreB family elongation factor [Burkholderia ambifaria MEX-5]
Length = 132
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L+ ++ RA+++ + + + + ++L+++ S ++ + IV A+++ G +++
Sbjct: 28 AMLDTLLERADIVQPDAIKANVVTMNSQITLLDEASQEQTTWTIVYPDAANLELGRLNVF 87
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
SP+ AL+G + G ++ V P G EK ++ +++
Sbjct: 88 SPVGMALLGTQRGQLVKVLQPSGVEKLMKVAAIVF 122
>gi|257057149|ref|YP_003134981.1| transcription elongation factor GreA [Saccharomonospora viridis DSM
43017]
gi|256587021|gb|ACU98154.1| transcription elongation factor GreA [Saccharomonospora viridis DSM
43017]
Length = 172
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D+++ EL RP I I+ +R GDL EN Y AA+E Q E R+ L
Sbjct: 12 LTQDAYDRLKNELD-ELIANRPVIAAKINASREEGDLKENGGYHAAREEQGQQEARIRHL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISS 124
+ ++ A+V + G IA V V + D + ++ +E L S S
Sbjct: 71 QELLRSAKVGEAPKDDG--IAEPGMVLTVRYDGDDDEETFLLATREEGGSGSLEVYSPDS 128
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ +AL+G + + P G
Sbjct: 129 PLGKALLGAKENESREYQLPNG 150
>gi|108762200|ref|YP_632099.1| regulator of nucleoside diphosphate kinase [Myxococcus xanthus DK
1622]
gi|108466080|gb|ABF91265.1| regulator of nucleoside diphosphate kinase [Myxococcus xanthus DK
1622]
Length = 138
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 61 GRMAELENII----TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
GR AE ++ TRA V+ + D + + V ++ SG+++ +V ++A
Sbjct: 27 GRTAEFAEMLDAELTRARVVASEEVPPDVVTMNSKVVFEDEQSGERREVTLVYPRDASSD 86
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146
G +S+ +PI ALIG +G I+ PGG
Sbjct: 87 DGRISVLAPIGSALIGLTVGQTITWPLPGG 116
>gi|239820663|ref|YP_002947848.1| GreA/GreB family elongation factor [Variovorax paradoxus S110]
gi|239805516|gb|ACS22582.1| GreA/GreB family elongation factor [Variovorax paradoxus S110]
Length = 133
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +++ AEV + G+ + + V +V+ ++ ++ I +EA +GL+S+ SP
Sbjct: 31 LADLLDCAEVTSSRAVPGNIVTMCSRVEIVDAHTRRRQTLTICYPEEAKPAAGLISVLSP 90
Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+ L+G ++GD AP GE E+ +L+
Sbjct: 91 VGTGLLGLKVGDTARWQAPNGEACAAEVAAILF 123
>gi|330895488|gb|EGH27800.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 165
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 9/99 (9%)
Query: 62 RMAELE-------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
R+A+LE + A+V+ +S +++ G+ V+ ++ +++ +VG+ +AD
Sbjct: 63 RLADLERDLRYFNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQD-NQQRVHLVGEDQAD 120
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
G ++ SP+ RALIG + GD + P G+++ E+L
Sbjct: 121 AAKGQINWGSPLGRALIGAQKGDEVLWQRPAGDQSIEVL 159
>gi|254250301|ref|ZP_04943621.1| Transcription elongation factor [Burkholderia cenocepacia PC184]
gi|124876802|gb|EAY66792.1| Transcription elongation factor [Burkholderia cenocepacia PC184]
Length = 132
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ RA+++ + + + + + ++L+++ + ++ + IV A+++ G +++ SP
Sbjct: 30 LDTLLERADIVQPNAIKANVVTMNSQITLLDEATQEQATWTIVYPDSANLELGRLNVFSP 89
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+ AL+G + G ++ V P G EK ++ +++
Sbjct: 90 VGMALLGTQRGQMVKVMQPSGAEKLMKVASIVF 122
>gi|78061874|ref|YP_371782.1| GreA/GreB family elongation factor [Burkholderia sp. 383]
gi|77969759|gb|ABB11138.1| GreA/GreB family elongation factor [Burkholderia sp. 383]
Length = 132
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ RA+++ + + + + ++L+++ + ++ + IV A+++ G +++ SP
Sbjct: 30 LDTLLERADIVQPDAIKANVVTMNSQITLLDEATQEQATWTIVYPDAANLELGRLNVFSP 89
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+ AL+G + G ++ V P G EK ++ +++
Sbjct: 90 VGMALLGTQRGQMVKVTQPSGAEKLMKVAAIVF 122
>gi|325928206|ref|ZP_08189414.1| transcription elongation factor [Xanthomonas perforans 91-118]
gi|325541422|gb|EGD12956.1| transcription elongation factor [Xanthomonas perforans 91-118]
Length = 157
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P
Sbjct: 52 LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 111
Query: 126 IARALIGKELGDIISVNAPGG 146
+ AL+G +G I P G
Sbjct: 112 VGSALLGLSVGQSIDWRTPDG 132
>gi|167839479|ref|ZP_02466163.1| nucleoside diphosphate kinase regulator, putative [Burkholderia
thailandensis MSMB43]
Length = 132
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ RA++++ + + + + + L+++++G + IV A+ + G +++ SP
Sbjct: 30 LDTLLERADIVEPDKIQANVVTMNSQIKLLDESAGQDMIWTIVYPDAANFEQGRLNVFSP 89
Query: 126 IARALIGKELGDIISVNAPG-GEKTYEILQVLW 157
+ AL+G G+ + V PG + T +I+++++
Sbjct: 90 VGMALLGARRGERVKVTLPGAADATLKIVEIVY 122
>gi|21107037|gb|AAM35791.1| regulator of nucleoside diphosphate kinase [Xanthomonas axonopodis
pv. citri str. 306]
Length = 138
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P
Sbjct: 33 LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 92
Query: 126 IARALIGKELGDIISVNAPGG 146
+ AL+G +G I P G
Sbjct: 93 VGSALLGLSVGQRIDWRTPDG 113
>gi|77748553|ref|NP_641255.2| regulator of nucleoside diphosphate kinase [Xanthomonas axonopodis
pv. citri str. 306]
Length = 146
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P
Sbjct: 41 LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 100
Query: 126 IARALIGKELGDIISVNAPGG 146
+ AL+G +G I P G
Sbjct: 101 VGSALLGLSVGQRIDWRTPDG 121
>gi|313676808|ref|YP_004054804.1| grea/greb family elongation factor [Marivirga tractuosa DSM 4126]
gi|312943506|gb|ADR22696.1| GreA/GreB family elongation factor [Marivirga tractuosa DSM 4126]
Length = 149
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 3/109 (2%)
Query: 48 EYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107
++ A+ E QN E + +L N ++ A V + M D I G+ V VE G + N +
Sbjct: 43 KFLASDETQN--EAWIIKLTNELSNAIVKRENEMPVDVIKIGSKVD-VETPYGRRNNIIL 99
Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
V E ++ +S+ SP+ ALIG GD + + P G+ T +IL V+
Sbjct: 100 VKPTEKNINENKISLLSPMGSALIGYAKGDEVDWDLPKGKSTIKILNVV 148
>gi|78046496|ref|YP_362671.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|78034926|emb|CAJ22571.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. vesicatoria str. 85-10]
Length = 146
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P
Sbjct: 41 LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 100
Query: 126 IARALIGKELGDIISVNAPGG 146
+ AL+G +G I P G
Sbjct: 101 VGSALLGLSVGQSIDWRTPDG 121
>gi|289670900|ref|ZP_06491975.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. musacearum NCPPB4381]
Length = 143
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P
Sbjct: 41 LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 100
Query: 126 IARALIGKELGDIISVNAPGG 146
+ AL+G +G I P G
Sbjct: 101 VGSALLGLSVGQSIDWRTPDG 121
>gi|187929940|ref|YP_001900427.1| GreA/GreB family elongation factor [Ralstonia pickettii 12J]
gi|187726830|gb|ACD27995.1| GreA/GreB family elongation factor [Ralstonia pickettii 12J]
Length = 135
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++++I RA V+ + + D + + V +V+ ++G ++ + +V +EA+V S +S+ SP
Sbjct: 34 VDDLIARANVVPSNKIPADVVTMNSVVCVVD-DAGAEQKWTLVYPEEANVASAKLSVLSP 92
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ AL+G G + +AP G +
Sbjct: 93 MGAALLGARAGKSVKYSAPNGAQ 115
>gi|289663515|ref|ZP_06485096.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. vasculorum NCPPB702]
Length = 143
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P
Sbjct: 41 LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 100
Query: 126 IARALIGKELGDIISVNAPGG 146
+ AL+G +G I P G
Sbjct: 101 VGSALLGLSVGQSIDWRTPDG 121
>gi|269137850|ref|YP_003294550.1| nucleoside diphosphate kinase regulator [Edwardsiella tarda EIB202]
gi|267983510|gb|ACY83339.1| nucleoside diphosphate kinase regulator [Edwardsiella tarda EIB202]
gi|304557903|gb|ADM40567.1| Regulator of nucleoside diphosphate kinase [Edwardsiella tarda
FL6-60]
Length = 136
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E + A Q LNE EL+ RA+++ + M D +
Sbjct: 3 RPAIIINELDAERLDRLLERPAFAAQPVAQALNE----ELD----RAQLLAPAAMPADVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + N+ ++ +V D +S+ +PI AL+G +GD I P G
Sbjct: 55 TMNSRVRFRDLNTNEEHVRTLVYPHLQDSAEDGLSVMAPIGAALLGLRVGDAIRWTLPNG 114
Query: 147 EKTY-EILQVLW 157
+T+ E+L +L+
Sbjct: 115 NQTHIEVLALLY 126
>gi|91215744|ref|ZP_01252714.1| transcription elongation factor GreB [Psychroflexus torquis ATCC
700755]
gi|91186210|gb|EAS72583.1| transcription elongation factor GreB [Psychroflexus torquis ATCC
700755]
Length = 164
Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+G++ L+ + A+V++ + I FGA V K +G ++++IVG EA+++
Sbjct: 69 DGKLKLLDERLNSAQVLNPEQQNKSEIRFGAHVKF--KMNGSIQDFKIVGVDEANIKEKK 126
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++ +SP+A A+ K+ GD + EIL + +
Sbjct: 127 IAFTSPLAMAMTSKKKGDNFEFKLSQDSRPIEILGINY 164
>gi|85859428|ref|YP_461630.1| transcription elongation factor [Syntrophus aciditrophicus SB]
gi|85722519|gb|ABC77462.1| transcription elongation factor [Syntrophus aciditrophicus SB]
Length = 134
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + A V+ M D + + V + +G+++ +V +A++ SG VS+ +P
Sbjct: 32 LEAELVNAVVVPSEEMPPDVVTMNSCVCFEDLTTGNRETITLVYPGQANMASGRVSVLAP 91
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+ ALIG +G I P G K I++VL+
Sbjct: 92 VGSALIGLSVGQTIEWPMPNGRKRRLRIVEVLY 124
>gi|332293562|ref|YP_004432171.1| GreA/GreB family elongation factor [Krokinobacter diaphorus
4H-3-7-5]
gi|332171648|gb|AEE20903.1| GreA/GreB family elongation factor [Krokinobacter diaphorus
4H-3-7-5]
Length = 167
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 16/151 (10%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VTS G ++++EL + L E E + + L LN R L
Sbjct: 31 VTSHGLSQLKEELSTLDTK--------------ISTLDETDERERRRALAVLNGKRNLLL 76
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I + ++D G+ I FGATV+ QIVG EA V+ ++ ++PI
Sbjct: 77 ERIQS-VRLLDHIKDEGE-IRFGATVTYTIAGMPKPITIQIVGVDEASVKDKKIAFTAPI 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK + + + E+ I +++
Sbjct: 135 ARALIGKRIDETTTFQLGNEERKLTIKNIVY 165
>gi|134293951|ref|YP_001117687.1| GreA/GreB family elongation factor [Burkholderia vietnamiensis G4]
gi|134137108|gb|ABO58222.1| GreA/GreB family elongation factor [Burkholderia vietnamiensis G4]
Length = 132
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ RA+++ + + + + + ++L+++ S ++ + IV A+++ G +++ SP
Sbjct: 30 LDTLLERADIVQPNAVKANVVTMNSQITLLDETSQEQTTWTIVYPDAANLELGRLNVFSP 89
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ AL+G + G + V P G EK ++ +++
Sbjct: 90 VGMALLGTQRGQSVKVMQPSGIEKLMKVAAIVF 122
>gi|107025987|ref|YP_623498.1| GreA/GreB family elongation factor [Burkholderia cenocepacia AU
1054]
gi|116692828|ref|YP_838361.1| GreA/GreB family elongation factor [Burkholderia cenocepacia
HI2424]
gi|170737905|ref|YP_001779165.1| GreA/GreB family elongation factor [Burkholderia cenocepacia MC0-3]
gi|206563773|ref|YP_002234536.1| putative transcription elongation factor [Burkholderia cenocepacia
J2315]
gi|105895361|gb|ABF78525.1| GreA/GreB family elongation factor [Burkholderia cenocepacia AU
1054]
gi|116650828|gb|ABK11468.1| GreA/GreB family elongation factor [Burkholderia cenocepacia
HI2424]
gi|169820093|gb|ACA94675.1| GreA/GreB family elongation factor [Burkholderia cenocepacia MC0-3]
gi|198039813|emb|CAR55787.1| putative transcription elongation factor [Burkholderia cenocepacia
J2315]
Length = 132
Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ RA+++ + + + + ++L+++ + ++ + IV A+++ G +++ SP
Sbjct: 30 LDTLLERADIVQPDAIKANVVTMNSQITLLDEATQEQATWTIVYPDAANLELGRLNVFSP 89
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+ AL+G + G ++ V P G EK ++ +++
Sbjct: 90 VGMALLGTQRGQMVKVMQPSGAEKLMKVAAIVF 122
>gi|310816463|ref|YP_003964427.1| nucleoside diphosphate kinase regulator [Ketogulonicigenium vulgare
Y25]
gi|308755198|gb|ADO43127.1| nucleoside diphosphate kinase regulator [Ketogulonicigenium vulgare
Y25]
Length = 129
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
++RA+V+ + + D + G+TV+ ++ +G + + + AD+ G +S+++PI A
Sbjct: 41 LSRAKVVKSAALPVDTVDLGSTVTFRDETTGKSQTVTLALPENADINEGRISVATPIGVA 100
Query: 130 LIGKELGDIISVNAPGGEKTYEIL 153
LIG G S A G K +E+L
Sbjct: 101 LIGLSAGAKFSWLANTGTK-HELL 123
>gi|221196032|ref|ZP_03569079.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2M]
gi|221202706|ref|ZP_03575725.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2]
gi|221176640|gb|EEE09068.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2]
gi|221182586|gb|EEE14986.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2M]
Length = 132
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L+ ++ RAE++ + + + + ++L+++ + + + IV A+++ G +++
Sbjct: 28 AMLDTLLERAEIVRSDAIKANVVTMNSQITLLDEATQEPATWTIVYPDAANLELGRLNVF 87
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
SP+ AL+G + G + V P G EK ++ ++++
Sbjct: 88 SPVGMALLGTQRGQSVKVMQPSGTEKLMKVAEIVF 122
>gi|260896883|ref|ZP_05905379.1| transcription elongation factor GreA [Vibrio parahaemolyticus
Peru-466]
gi|308086278|gb|EFO35973.1| transcription elongation factor GreA [Vibrio parahaemolyticus
Peru-466]
Length = 38
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD +++ PGG K +EI +V +I
Sbjct: 1 SVSSPIARGLIGKMEGDEVAIQTPGGAKDFEIDRVEYI 38
>gi|325982230|ref|YP_004294632.1| GreA/GreB family elongation factor [Nitrosomonas sp. AL212]
gi|325531749|gb|ADZ26470.1| GreA/GreB family elongation factor [Nitrosomonas sp. AL212]
Length = 136
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
I RA V++ + + D I +T+ V+ +G + +V EA G +SI++P+ A
Sbjct: 39 IDRASVVEPTEVPSDVITMNSTIRFVDDMNGSEHQLTLVYPDEAGAH-GTISIAAPVGSA 97
Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVL 156
L+G +G I PGG E +L+V+
Sbjct: 98 LLGLSVGQSIRWQVPGGRELNLRVLEVI 125
>gi|25027606|ref|NP_737660.1| transcription elongation factor GreA [Corynebacterium efficiens
YS-314]
gi|23492888|dbj|BAC17860.1| putative transcription elongation factor GreA [Corynebacterium
efficiens YS-314]
Length = 217
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 15 IQQELRWRQQEE-------RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
I E++ + +EE RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++
Sbjct: 52 ITPEMKAKLEEELNTLIARRPIVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQIS 111
Query: 68 NIITRAEVIDISTMSGDRIA-FGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSIS-- 123
++ A + G +A G+ V + + + DK+ + I A L + S
Sbjct: 112 EVLANATTEREGIVEG--VANVGSVVHVYYDGDESDKETFLIGTRAAATDNPDLETYSEQ 169
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ A++G G+ P G
Sbjct: 170 SPLGAAILGAHEGETREYTTPNG 192
>gi|295134424|ref|YP_003585100.1| GreA-like transcription elongation factor [Zunongwangia profunda
SM-A87]
gi|294982439|gb|ADF52904.1| GreA-like transcription elongation factor [Zunongwangia profunda
SM-A87]
Length = 166
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+G++ L A +I + D + FGA V L + + +QIVG EA+V+
Sbjct: 69 DGKLKLLAERRASARIIHPNQQPDDEVRFGAHVKLKNHTANSIQQFQIVGVDEANVKQQK 128
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++ +PIA+A+ G ++G+ + EIL + +
Sbjct: 129 IAFVAPIAKAVTGLKVGEKAEFKLGTETRILEILDITY 166
>gi|163747966|ref|ZP_02155295.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45]
gi|161378763|gb|EDQ03203.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45]
Length = 146
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 54 ELQNLNEGRMAELENI-------ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106
L+ L EG M + I RA++++ M GD + G+ V+ ++ +G K+
Sbjct: 27 HLEELAEGMMHRHPTLADRFFEEIGRAQIVEDQQMPGDVVGIGSKVTYRDETTGQNKSVT 86
Query: 107 IVGDQEADVQSGLVSISSPIARALIG 132
+V ++AD+ VS+ +PI AL+G
Sbjct: 87 LVYPEDADITRSQVSVITPIGVALLG 112
>gi|120612663|ref|YP_972341.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1]
gi|120591127|gb|ABM34567.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1]
Length = 136
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +++ A+V T+ D + + V LV+ +G ++ I ++AD+ +G VS+ SP
Sbjct: 34 LADLLENADVTSSRTVEADVVTMYSRVELVDTATGARQVLTICYPRDADLAAGFVSVLSP 93
Query: 126 IARALIGKELGDIISVNAPGGEKT 149
+ +L+G +G P GE
Sbjct: 94 VGSSLLGLRVGQTARWCTPRGEAC 117
>gi|309781359|ref|ZP_07676095.1| regulator of nucleoside diphosphate kinase [Ralstonia sp.
5_7_47FAA]
gi|308919772|gb|EFP65433.1| regulator of nucleoside diphosphate kinase [Ralstonia sp.
5_7_47FAA]
Length = 135
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++++I RA V+ + + D + + V +V+ ++G ++ + +V +EA+V S +S+ SP
Sbjct: 34 VDDLIARANVVPGNKIPADVVTMNSVVCVVD-DTGAEQEWTLVYPEEANVASAKLSVLSP 92
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ AL+G G + +AP G +
Sbjct: 93 MGAALLGARAGKSVKYSAPNGAQ 115
>gi|303239530|ref|ZP_07326056.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2]
gi|302592908|gb|EFL62630.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2]
Length = 147
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 9/144 (6%)
Query: 15 IQQELRWRQQEERPRIIKAIS--EARAYGDLSENAEYQAAK-ELQNLNEGRMAELENIIT 71
+Q++L QQ + + E R + + EY + + E + L + ++ L++++
Sbjct: 1 MQKKLTLTQQAYENLLAHLVDFEERRKHIIMLYFPEYNSQRVEFEVLIDDYISALDDVVR 60
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKN---SGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
+ S SG+ F S++E + + NY ++ + D + ++I SP+ +
Sbjct: 61 N---VSFSDKSGNDFPFVCLNSVIEVEDVENTETFNYMLILPEANDYGTNCITILSPMGK 117
Query: 129 ALIGKELGDIISVNAPGGEKTYEI 152
AL+ K+ G+ +SVN P G Y I
Sbjct: 118 ALLCKKDGETVSVNTPSGVYRYRI 141
>gi|296103416|ref|YP_003613562.1| nucleoside diphosphate kinase regulator [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295057875|gb|ADF62613.1| nucleoside diphosphate kinase regulator [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 136
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E E+ + LNE EL+ RA++ +M D +
Sbjct: 3 RPTIIINELDAERIDRLLEKPEFASLPVADALNE----ELD----RAQMCTPESMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V +G++ +V + S +S+ +P+ AL+G GD I PGG
Sbjct: 55 TMNSQVKFRNLTTGEELTRTLVYPAQMTDSSAQLSVLAPVGAALLGLRTGDTIHWELPGG 114
Query: 147 EKTY-EILQVLW 157
T+ E+L +L+
Sbjct: 115 ASTHLEVLALLY 126
>gi|197105386|ref|YP_002130763.1| transcription elongation factor GreA/GreB, family [Phenylobacterium
zucineum HLK1]
gi|196478806|gb|ACG78334.1| transcription elongation factor GreA/GreB, family [Phenylobacterium
zucineum HLK1]
Length = 161
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
A+V++ S D +AFG V+ K+ G + ++VG+ EA+ G +S +P+ARA+IG
Sbjct: 74 AQVVE-SPADPDEVAFGTRVTF-RKDGGAPETVELVGEDEAEPAQGRLSWVAPLARAMIG 131
Query: 133 KELGDIISVNAPGGEKTYEILQV 155
G+ + + EIL V
Sbjct: 132 AMPGETVELETRTPAIRLEILAV 154
>gi|56476179|ref|YP_157768.1| transcription elongation factor [Aromatoleum aromaticum EbN1]
gi|56312222|emb|CAI06867.1| Transcription elongation factor [Aromatoleum aromaticum EbN1]
Length = 158
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AELE RA V+ + + + V +++ SG+++ Q+V +EADV +G VS+
Sbjct: 60 AELE----RAVVVPPDFLPRHVVTMHSRVRYLDEASGEQREIQVVYPEEADVAAGKVSVF 115
Query: 124 SPIARALIGKELGDIISVNAPGGEK 148
+P+ AL+G + +I + P G +
Sbjct: 116 APVGAALLGLSVDQVIEWDFPRGPR 140
>gi|75675115|ref|YP_317536.1| transcription elongation factor GreA/GreB region [Nitrobacter
winogradskyi Nb-255]
gi|74419985|gb|ABA04184.1| GreA/GreB family elongation factor [Nitrobacter winogradskyi
Nb-255]
Length = 151
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Query: 70 ITRAEVI--DISTMSGDR--------IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
I RAE+I D S + R + + V+ ++ SG K+ +V ++ADV +G
Sbjct: 45 IDRAEIIPADGSLLDDTRDQRWKVNLVTMQSEVTFIDDVSGQKRRVTLVYPEDADVDAGK 104
Query: 120 VSISSPIARALIGKELGDIISVNAP-GGEKTYEILQV 155
+SI SPI ALIG G I P GG ++ ++ V
Sbjct: 105 ISILSPIGAALIGLSAGQSIEFQTPSGGWRSLTVIAV 141
>gi|241664050|ref|YP_002982410.1| GreA/GreB family elongation factor [Ralstonia pickettii 12D]
gi|240866077|gb|ACS63738.1| GreA/GreB family elongation factor [Ralstonia pickettii 12D]
Length = 135
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++++I RA V+ + + D + + V +V+ ++G ++ + +V +EA+V S +S+ SP
Sbjct: 34 VDDLIARANVVPGNKIPADVVTMNSVVCVVD-DTGAEQEWTLVYPEEANVASAKLSVLSP 92
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ AL+G G I AP G +
Sbjct: 93 MGAALLGARAGKSIKYAAPNGAQ 115
>gi|259506992|ref|ZP_05749892.1| transcription elongation factor GreA [Corynebacterium efficiens
YS-314]
gi|259165444|gb|EEW49998.1| transcription elongation factor GreA [Corynebacterium efficiens
YS-314]
Length = 174
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 15 IQQELRWRQQEE-------RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
I E++ + +EE RP + I+E R GDL ENA Y AA+E+Q+ E R+ ++
Sbjct: 9 ITPEMKAKLEEELNTLIARRPIVAAEINERREEGDLKENAGYDAAREMQDQEEARIKQIS 68
Query: 68 NIITRAEVIDISTMSGDRIA-FGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSIS-- 123
++ A + G +A G+ V + + + DK+ + I A L + S
Sbjct: 69 EVLANATTEREGIVEG--VANVGSVVHVYYDGDESDKETFLIGTRAAATDNPDLETYSEQ 126
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ A++G G+ P G
Sbjct: 127 SPLGAAILGAHEGETREYTTPNG 149
>gi|77165386|ref|YP_343911.1| transcription elongation factor [Nitrosococcus oceani ATCC 19707]
gi|254434724|ref|ZP_05048232.1| hypothetical protein NOC27_1655 [Nitrosococcus oceani AFC27]
gi|76883700|gb|ABA58381.1| transcription elongation factor [Nitrosococcus oceani ATCC 19707]
gi|207091057|gb|EDZ68328.1| hypothetical protein NOC27_1655 [Nitrosococcus oceani AFC27]
Length = 129
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 62/110 (56%), Gaps = 7/110 (6%)
Query: 55 LQNLNEGRMAELENIITRAEVIDISTM-----SGDRI-AFGATVSLVEKNSGDKKNYQIV 108
+ +L+ GR+ L AE +D +T+ DR+ + + +++N+G+++ ++V
Sbjct: 9 ITDLDYGRLRALGEQTLLAEELDRATVIPQERVPDRVVTMHSRLIYLDENTGERREVELV 68
Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+EA+ ++G +S+ +P+ AL+G +G+ I P GE + + Q+L+
Sbjct: 69 YPEEANTRAGKISVLAPVGSALLGLSVGESIDWKFPSGEVRRLSVEQILF 118
>gi|34497951|ref|NP_902166.1| nucleoside diphosphate kinase regulator [Chromobacterium violaceum
ATCC 12472]
gi|34103806|gb|AAQ60167.1| nucleoside diphosphate kinase regulator [Chromobacterium violaceum
ATCC 12472]
Length = 134
Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 61 GRM-AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ AELE RA+V+D M + + ++V + G +K +V ++AD + G
Sbjct: 32 GRLEAELE----RADVVDPQAMPSNVVTMNSSVR-IRLGDGQEKQLTLVYPRDADSEQGR 86
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S+ +PI AL+G G + P G +L++ +
Sbjct: 87 ISVLAPIGAALLGLSTGQSMQWPTPSGHTELTVLEITY 124
>gi|83592278|ref|YP_426030.1| nucleoside diphosphate kinase regulator [Rhodospirillum rubrum ATCC
11170]
gi|83575192|gb|ABC21743.1| GreA/GreB family elongation factor [Rhodospirillum rubrum ATCC
11170]
Length = 136
Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
I RA V+ ++ D + GA V+ ++++G + +V EAD+ G +SI +PI A
Sbjct: 46 IDRARVLPSESVPADVVTLGAEVTFRDESTGRVRKVTLVYPGEADIDQGKISIMTPIGVA 105
Query: 130 LIGKELGDIIS-VNAPGGEKTYEILQV 155
LIG +G I + G E+ +L V
Sbjct: 106 LIGLAVGASIDWLTRDGDERHLSVLAV 132
>gi|300114334|ref|YP_003760909.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113]
gi|299540271|gb|ADJ28588.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113]
Length = 129
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 57/99 (57%), Gaps = 6/99 (6%)
Query: 55 LQNLNEGRMAELENIITRAEVIDISTM-----SGDRI-AFGATVSLVEKNSGDKKNYQIV 108
+ +L+ GR+ L AE +D +T+ DR+ + + +++N+G+++ ++V
Sbjct: 9 ITDLDYGRLRALGEQTLLAEELDRATVIPRERVPDRVVTMHSRLIYLDENTGERREVELV 68
Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+EA++++G +S+ +P+ AL+G +G+ I P GE
Sbjct: 69 YPEEANMRAGKISVLAPVGSALLGLSVGESIDWKFPSGE 107
>gi|194364464|ref|YP_002027074.1| GreA/GreB family elongation factor [Stenotrophomonas maltophilia
R551-3]
gi|194347268|gb|ACF50391.1| GreA/GreB family elongation factor [Stenotrophomonas maltophilia
R551-3]
Length = 134
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 99 SGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148
SG+K +V +EA+V G VS+ +P+ AL+G +G I NAPGG K
Sbjct: 72 SGEKHVLTLVFPREANVDEGKVSVLAPVGSALLGLSIGQSIDWNAPGGRK 121
>gi|227877958|ref|ZP_03995963.1| possible transcription elongation factor GreA [Lactobacillus
crispatus JV-V01]
gi|227862461|gb|EEJ69975.1| possible transcription elongation factor GreA [Lactobacillus
crispatus JV-V01]
Length = 90
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK 53
MV +T +G+ +I+ E+ R +++RPR IK + ARA GDLSEN EY AK
Sbjct: 20 MVYFQKMTPEGYQQIEDEIA-RLKKDRPRRIKILQAARALGDLSENTEYTEAK 71
>gi|149369863|ref|ZP_01889714.1| transcription elongation factor [unidentified eubacterium SCB49]
gi|149356354|gb|EDM44910.1| transcription elongation factor [unidentified eubacterium SCB49]
Length = 139
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 47 AEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106
A+++ K + LNE EL+ I ++D M D I F + V + KN G KK +Q
Sbjct: 27 ADFEIQKSFKRLNE----ELKTAI----IVDEEEMPTDVIRFNSQVLISTKN-GWKKEFQ 77
Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
IV DV++ +SI + + AL G GD + P G+ I +V
Sbjct: 78 IVSPALKDVKADKISILTVMGAALFGYAQGDTVEWEFPTGKNLITIEKV 126
>gi|295096632|emb|CBK85722.1| Transcription elongation factor [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 136
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E E+ + LNE EL+ RA++ TM D +
Sbjct: 3 RPTIIINELDAERIDRLLEKPEFASLPVSDALNE----ELD----RAQMCTPETMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V +G++ +V + S +S+ +P+ AL+G GD I PGG
Sbjct: 55 TMNSQVKFRNLTTGEELTRTLVYPAQMTDSSTQLSVLAPVGAALLGLRTGDTIHWELPGG 114
Query: 147 EKTY-EILQVLW 157
+ E+L++L+
Sbjct: 115 ASAHLEVLELLY 126
>gi|190572883|ref|YP_001970728.1| putative regulator of nucleoside diphosphate kinase
[Stenotrophomonas maltophilia K279a]
gi|190010805|emb|CAQ44414.1| putative regulator of nucleoside diphosphate kinase
[Stenotrophomonas maltophilia K279a]
Length = 134
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 99 SGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148
SG+K +V +EA+V G VS+ +P+ AL+G +G I NAPGG K
Sbjct: 72 SGEKHVLTLVFPREANVDEGKVSVLAPVGSALLGLSIGQSIDWNAPGGRK 121
>gi|255035431|ref|YP_003086052.1| GreA/GreB family elongation factor [Dyadobacter fermentans DSM
18053]
gi|254948187|gb|ACT92887.1| GreA/GreB family elongation factor [Dyadobacter fermentans DSM
18053]
Length = 134
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 51/108 (47%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
Q A+ + N L + RA V++ + + I + V + E + + + IV
Sbjct: 20 QFAQTFPDNNSSETMSLAYELNRAVVVEDNELPAGSIRLNSYVKVRETTTNKEMAFSIVM 79
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++AD+ +SI +P+ ALIG G+ + P G + ++IL V +
Sbjct: 80 PKDADIAKQRISILTPMGAALIGLCKGETVEWKMPAGIRRFKILDVWY 127
>gi|319763041|ref|YP_004126978.1| transcription elongation factor grea/greb domain-containing protein
[Alicycliphilus denitrificans BC]
gi|330825121|ref|YP_004388424.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans
K601]
gi|317117602|gb|ADV00091.1| transcription elongation factor GreA/GreB domain-containing protein
[Alicycliphilus denitrificans BC]
gi|329310493|gb|AEB84908.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans
K601]
Length = 135
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR A LE + RA+V D M + + +TV SG +V +E D V
Sbjct: 30 GRDA-LEAELDRADVFDPKDMPPNVVTMNSTVRFTMLESGKTNTLTLVYPKEMDGSGDKV 88
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152
SI +P+ AL+G +GD + +P G+ T +
Sbjct: 89 SIFAPVGIALLGLAVGDEFQMPSPTGQVTVRV 120
>gi|289208904|ref|YP_003460970.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix]
gi|288944535|gb|ADC72234.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix]
Length = 136
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A+LE + RA+V+D + G + + V SG++ + +V ++ D G +SI
Sbjct: 32 ADLEAELDRADVVDSREIPGTVVTMNSKVRFRVTESGEEFSLTLVYPRDVDDSGGTLSIL 91
Query: 124 SPIARALIGKELGDIISVNAPGGEKTY 150
+P+ AL+G GD I PGG + +
Sbjct: 92 APVGSALLGLSEGDEIEWPRPGGGQMH 118
>gi|254521305|ref|ZP_05133360.1| regulator of nucleoside diphosphate kinase [Stenotrophomonas sp.
SKA14]
gi|219718896|gb|EED37421.1| regulator of nucleoside diphosphate kinase [Stenotrophomonas sp.
SKA14]
Length = 134
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA V+ + + + V ++ SG+K +V +EA+V G VS+ +P+ A
Sbjct: 43 LNRATVLAPDQIPEGIVMMHSRVECEDEVSGEKHVLTLVFPREANVDEGKVSVLAPVGSA 102
Query: 130 LIGKELGDIISVNAPGGEK 148
L+G +G I NAPGG K
Sbjct: 103 LLGLAIGQSIDWNAPGGRK 121
>gi|325914289|ref|ZP_08176639.1| transcription elongation factor [Xanthomonas vesicatoria ATCC
35937]
gi|325539544|gb|EGD11190.1| transcription elongation factor [Xanthomonas vesicatoria ATCC
35937]
Length = 172
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA ++ + GD + + + ++ G++ +V EADVQ G +S+ +P
Sbjct: 67 LSDELGRARLLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 126
Query: 126 IARALIGKELGDIISVNAPGG 146
+ AL+G +G I P G
Sbjct: 127 VGSALLGLSVGQSIDWRTPDG 147
>gi|163748064|ref|ZP_02155383.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45]
gi|161378670|gb|EDQ03120.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45]
Length = 145
Score = 43.5 bits (101), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 54 ELQNLNEGRM-------AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106
EL+ L+EG M +L + RA ++ + D + G V+ ++ +G
Sbjct: 25 ELEALSEGMMRRNPELAEQLVEELGRARIVTPQRLRADVVDLGREVTYHDEATGKDHTVT 84
Query: 107 IVGDQEADVQSGLVSISSPIARALIG 132
+V Q AD+ +GLVS+ +PI ALIG
Sbjct: 85 LVLPQTADISNGLVSVMTPIGVALIG 110
>gi|114320917|ref|YP_742600.1| GreA/GreB family elongation factor [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227311|gb|ABI57110.1| GreA/GreB family elongation factor [Alkalilimnicola ehrlichii
MLHE-1]
Length = 137
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 14/124 (11%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM---AELENIITRAEVIDISTMS 82
ERP I+ + +A DL L +L G + AEL+ + RAE+++ +
Sbjct: 3 ERPNIVISTLDADRLYDL-----------LDSLPAGGVPSKAELKAELERAEIVEPEDIP 51
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
++ +TV +S ++ +V ++ D SG +S+ +P+ AL+G GD I
Sbjct: 52 PTVVSMNSTVRFRVASSSEEFTLTLVYPKDMDATSGKISVLAPVGSALLGLSQGDEIEWP 111
Query: 143 APGG 146
PGG
Sbjct: 112 KPGG 115
>gi|225157643|ref|ZP_03725033.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2]
gi|224802710|gb|EEG20963.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2]
Length = 148
Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 50 QAAKELQNLNEGR-----MAELENIITRAEVI-DISTMSGDRIAFGATVSLVEKNSGDKK 103
Q L + EGR +A L RA +I D + M + V L + ++ + +
Sbjct: 16 QIRARLNLIAEGRHDRENLARLRAEFDRALIIEDDTAMPDGVVTLHCEVRLQDLDTNEIE 75
Query: 104 NYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
Y + + AD ++ +SI +PI AL+G ++ ++++ PGG + IL+
Sbjct: 76 TYTLTLPEHADPEAHRISILAPIGTALLGYQVDNVVTWEMPGGARRLRILE 126
>gi|300703154|ref|YP_003744756.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
CFBP2957]
gi|299070817|emb|CBJ42114.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
CFBP2957]
Length = 134
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++++I RA V+ + D + + V V SG + + +V EAD+ + +S+ SP
Sbjct: 33 VDDLIARANVVPGDKIPADVVTMNSVVR-VRTESGVAQQWTLVYPDEADLAAARLSVCSP 91
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ AL+G GD + AP G T LQ+
Sbjct: 92 MGAALLGGRAGDAVHYVAPDG--TTHALQI 119
>gi|209884060|ref|YP_002287917.1| GreA/GreB family elongation factor [Oligotropha carboxidovorans
OM5]
gi|209872256|gb|ACI92052.1| GreA/GreB family elongation factor [Oligotropha carboxidovorans
OM5]
Length = 134
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 7/125 (5%)
Query: 33 AISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATV 92
AIS AR G L AE AA + +E E+E RAE+ D +A + V
Sbjct: 13 AIS-ARDAGRLRHLAEV-AAGQYPETSEFLAREIE----RAEIRAADQSMRDIVAMQSEV 66
Query: 93 SLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP-GGEKTYE 151
+ + G + +V ++ADV +G +S+ +PI ALIG ++G I P GG ++
Sbjct: 67 TFRDDIGGQARTVTLVYPEDADVAAGKISVLTPIGAALIGMQVGKSIEFQTPAGGWRSLT 126
Query: 152 ILQVL 156
+++V+
Sbjct: 127 VIKVV 131
>gi|167031723|ref|YP_001666954.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1]
gi|166858211|gb|ABY96618.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1]
Length = 165
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNY-QIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+ S ++ G+ V V+ D+++ ++VG+ EAD GL++ SP+ RAL+G GD
Sbjct: 86 AAASRSKVQIGSRVRFVDAQ--DQEHVVRLVGEDEADAGRGLINWGSPLGRALLGAGPGD 143
Query: 138 IISVNAPGGEKTYEILQV 155
+ P G++ EIL++
Sbjct: 144 EVVWRRPVGDQVIEILEI 161
>gi|262369473|ref|ZP_06062801.1| transcription elongation factor GreB [Acinetobacter johnsonii
SH046]
gi|262315541|gb|EEY96580.1| transcription elongation factor GreB [Acinetobacter johnsonii
SH046]
Length = 50
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ 50
+T G DK+ EL+ EERP I K ++ A + GD SENA+YQ
Sbjct: 6 ITRAGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQ 49
>gi|153011001|ref|YP_001372215.1| nucleoside diphosphate kinase regulator [Ochrobactrum anthropi ATCC
49188]
gi|151562889|gb|ABS16386.1| GreA/GreB family elongation factor [Ochrobactrum anthropi ATCC
49188]
Length = 142
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 52 AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
++ L+ + E M EL+ RA+V+ + + I G+TV N G ++ +V
Sbjct: 29 SERLEEIAEELMVELD----RAKVVPAKRLPQNVIHMGSTVEF-RSNDGQERRVTLVYPG 83
Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
EAD+ G +SI +PI ALIG G IS A G K +E+
Sbjct: 84 EADIAQGKISILTPIGTALIGLAPGQSISWTARDG-KQHEL 123
>gi|146280909|ref|YP_001171062.1| nucleoside diphosphate kinase regulator [Pseudomonas stutzeri
A1501]
gi|145569114|gb|ABP78220.1| regulator of nucleoside diphosphate kinase [Pseudomonas stutzeri
A1501]
gi|327479178|gb|AEA82488.1| nucleoside diphosphate kinase regulator [Pseudomonas stutzeri DSM
4166]
Length = 134
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 55 LQNLNE-GRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
L +L++ G AE LE ++RA+V++ S M + + V ++ SG + +V +
Sbjct: 21 LDSLDDYGPAAEALEQELSRAQVVERSEMPAGVVTMNSRVHCRDEGSGKDYHLTLVYPHD 80
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
A + G VS+ +P+ AL+G +G I APGG+
Sbjct: 81 AG-KEGTVSVLAPVGTALLGMSVGQHIDWPAPGGK 114
>gi|161520489|ref|YP_001583916.1| GreA/GreB family elongation factor [Burkholderia multivorans ATCC
17616]
gi|189353320|ref|YP_001948947.1| regulator of nucleoside diphosphate kinase [Burkholderia
multivorans ATCC 17616]
gi|221209737|ref|ZP_03582718.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD1]
gi|160344539|gb|ABX17624.1| GreA/GreB family elongation factor [Burkholderia multivorans ATCC
17616]
gi|189337342|dbj|BAG46411.1| regulator of nucleoside diphosphate kinase [Burkholderia
multivorans ATCC 17616]
gi|221170425|gb|EEE02891.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD1]
Length = 132
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L+ ++ RA+++ + + + + ++L+++ + + + IV A+++ G +++
Sbjct: 28 AMLDTLLERADIVRSDAIKANVVTMNSQITLLDEATQEPATWTIVYPDAANLELGRLNVF 87
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
SP+ AL+G + G + V P G EK ++ ++++
Sbjct: 88 SPVGMALLGTQRGQSVKVMQPSGTEKLMKVAEIVF 122
>gi|86751649|ref|YP_488145.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
HaA2]
gi|86574677|gb|ABD09234.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
HaA2]
Length = 134
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
+RP I+ +A G L+E A Q + G +A RA V
Sbjct: 8 QRPPIVLRSRDAERLGQLAEAA-AQRHPATADFLAGEVA-------RAAVTPDGEPLPGI 59
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ + ++ ++++G +K +V +ADV++G +S+ +PI ALIG +G I+ P
Sbjct: 60 VCMDSELTFRDESTGKEKQVTLVYPPDADVEAGRISVLTPIGAALIGLSVGQSITFETPS 119
Query: 146 GEK 148
GE+
Sbjct: 120 GER 122
>gi|332290966|ref|YP_004429575.1| GreA/GreB family elongation factor [Krokinobacter diaphorus
4H-3-7-5]
gi|332169052|gb|AEE18307.1| GreA/GreB family elongation factor [Krokinobacter diaphorus
4H-3-7-5]
Length = 139
Score = 43.1 bits (100), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 41 GDLSENAEYQAAKELQNLN--------EGRMAELENIITRAEVIDISTMSGDRIAFGATV 92
G + E EY K + N++ + + L N + A ++D M + I F + V
Sbjct: 5 GLILEKREYVFLKRVLNISGYVDDFETQKSLQRLSNELKSAHIVDDCDMPLNVIRFNSKV 64
Query: 93 SLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
+ V + G +K Q+V + DV VS+ +P+ A+ G + G II+ P G + I
Sbjct: 65 T-VSSDRGWEKTLQVVAPADKDVALSKVSVLTPMGSAIFGNKEGAIINWMFPSGMQELTI 123
Query: 153 LQVL 156
+V+
Sbjct: 124 TKVI 127
>gi|329847121|ref|ZP_08262149.1| regulator of nucleoside diphosphate kinase [Asticcacaulis
biprosthecum C19]
gi|328842184|gb|EGF91753.1| regulator of nucleoside diphosphate kinase [Asticcacaulis
biprosthecum C19]
Length = 142
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 18/118 (15%)
Query: 39 AYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKN 98
A GDL+ A+Y L + RA V+ ++ + G+ VS
Sbjct: 34 ATGDLAPAAQY----------------LRRELDRAAVVATMKLNPAVVRLGSVVSYA-AG 76
Query: 99 SGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS-VNAPGGEKTYEILQV 155
G ++ Q+V EAD+ +G +SI +P+ ALIG G I+ A G +++ E+ +V
Sbjct: 77 KGAERTVQLVLPGEADISTGCISILTPVGAALIGLRAGQSITFTTAQGRQQSLEVFRV 134
>gi|325277076|ref|ZP_08142731.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51]
gi|324097783|gb|EGB95974.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51]
Length = 165
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ A+V+ +T S ++ G+ V V+ ++VG+ EAD GL++ SP+ RA
Sbjct: 78 VQSAQVVPPAT-SHSKVQIGSRVRFVDAQD-QAHEVRLVGEDEADAGRGLINWGSPLGRA 135
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156
L+G GD + P GE E+ V+
Sbjct: 136 LLGAGPGDEVVWQRPVGELVIEVTDVI 162
>gi|300690546|ref|YP_003751541.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
PSI07]
gi|299077606|emb|CBJ50241.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
PSI07]
Length = 134
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 2/89 (2%)
Query: 59 NEGRMAEL-ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
N +AEL +++I RA V+ + D + + V V SG + + +V EA++ +
Sbjct: 25 NSSPLAELVDDLIARANVVPSDMIPADVVTMNSVVR-VRAGSGAAQEWTLVYPDEANLAA 83
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146
+S+ SP+ AL+G GD + AP G
Sbjct: 84 ARLSVLSPMGSALLGGRAGDEVHYAAPDG 112
>gi|146305312|ref|YP_001185777.1| nucleoside diphosphate kinase regulator [Pseudomonas mendocina ymp]
gi|145573513|gb|ABP83045.1| GreA/GreB family elongation factor [Pseudomonas mendocina ymp]
Length = 135
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L+ + RAEV+ + + + + V E++SG + +V Q+A + G VSI
Sbjct: 32 AALQAELDRAEVVGLDEVPAGLVTMNSRVHCREESSGKDYHLTLVYPQDAGGE-GTVSIL 90
Query: 124 SPIARALIGKELGDIISVNAPGGEK 148
+P+ AL+G +G I APGG++
Sbjct: 91 APVGSALLGLSVGQHIDWPAPGGKQ 115
>gi|149174289|ref|ZP_01852916.1| nucleoside diphosphate kinase regulator protein, putative
[Planctomyces maris DSM 8797]
gi|148846834|gb|EDL61170.1| nucleoside diphosphate kinase regulator protein, putative
[Planctomyces maris DSM 8797]
Length = 137
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 52/99 (52%)
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
N+ ++ L + A +++ + D + +TV L + + + + Y +V Q+A+++ G
Sbjct: 30 NKPYLSGLHAELAVAHIVESEEIPADIVTMNSTVRLRDLETDELETYTLVYPQDANIKEG 89
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SI +PI A++G +GD + A G + ++L+
Sbjct: 90 KLSILTPIGTAILGYRIGDQLRSRALAGGSKIRVEEILF 128
>gi|325290512|ref|YP_004266693.1| GreA/GreB family elongation factor [Syntrophobotulus glycolicus DSM
8271]
gi|324965913|gb|ADY56692.1| GreA/GreB family elongation factor [Syntrophobotulus glycolicus DSM
8271]
Length = 138
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
++R RI+K I + +G N+ + +LE + RA ++ + +
Sbjct: 10 KDRERILKLIEREKEFG--------------TGRNKEPLRDLEQELNRANIVSSEEIPHE 55
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
I + V L + G++ Y +V ++A + +S+ +PI A++G GD+I P
Sbjct: 56 SITMNSKVLLKDLALGEETIYTLVYPEDAKLSENKISVLAPIGTAILGFREGDVIDWKVP 115
Query: 145 GGEKTYEILQVLW 157
G + ++L+
Sbjct: 116 AGTVQLRVEKILY 128
>gi|330812543|ref|YP_004357005.1| GreA-GreB family transcriptional regulator [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327380651|gb|AEA72001.1| putative transcriptional regulator, GreA-GreB family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 136
Score = 42.7 bits (99), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN++ EV D + + V E++SG + +V Q+A+ G +SI +P+
Sbjct: 41 ENVVGHEEV------PADVVTMNSRVHCREESSGKDYHLTLVYPQDANADEGRISILAPV 94
Query: 127 ARALIGKELGDIISVNAPGGE 147
AL+G ++G I APGG+
Sbjct: 95 GSALLGLKVGQHIDWPAPGGK 115
>gi|256821334|ref|YP_003145297.1| GreA/GreB family elongation factor [Kangiella koreensis DSM 16069]
gi|256794873|gb|ACV25529.1| GreA/GreB family elongation factor [Kangiella koreensis DSM 16069]
Length = 136
Score = 42.7 bits (99), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELE + RAE+++ + + + +TV +S ++ Y +V ++AD + +SI +
Sbjct: 33 ELEIELERAEIVEPKEVPANVVTMNSTVRFKVASSKEEFEYTLVYPKDADGSNNKISILA 92
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ A++G + GD I PGG
Sbjct: 93 PVGSAMLGLKEGDEIEWPKPGG 114
>gi|146310806|ref|YP_001175880.1| nucleoside diphosphate kinase regulator [Enterobacter sp. 638]
gi|145317682|gb|ABP59829.1| GreA/GreB family elongation factor [Enterobacter sp. 638]
Length = 136
Score = 42.7 bits (99), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA++ +M D + + V + SG++ +V + S +S+ +P
Sbjct: 34 LNDELDRAQMCTAESMPHDVVTMNSQVRFRDLTSGEEHTRTLVYPAQMTDSSTQLSVLAP 93
Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
+ AL+G GD I PGG + E+L++L+
Sbjct: 94 VGAALLGLRTGDTIHWELPGGASAHLEVLELLY 126
>gi|77359225|ref|YP_338800.1| regulator of nucleoside diphosphate kinase [Pseudoalteromonas
haloplanktis TAC125]
gi|76874136|emb|CAI85357.1| putative regulator of nucleoside diphosphate kinase
[Pseudoalteromonas haloplanktis TAC125]
Length = 161
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELE + RA ++D + + +TV+ V ++S ++ N +V ++ D +SI +
Sbjct: 58 ELEAELGRATIVDPKDVPATIVTMNSTVNFVVESSKEEFNLTLVYPKDLDASGQKISILA 117
Query: 125 PIARALIGKELGDIISVNAPGG 146
PI AL+G GD I PGG
Sbjct: 118 PIGGALLGLSQGDEIEWPKPGG 139
>gi|134299378|ref|YP_001112874.1| GreA/GreB family elongation factor [Desulfotomaculum reducens MI-1]
gi|134052078|gb|ABO50049.1| GreA/GreB family elongation factor [Desulfotomaculum reducens MI-1]
Length = 137
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 53/105 (50%)
Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
KE ++ + LE + A+V+ + D I + V L + ++ ++ Y +V +
Sbjct: 23 KEFNPASKEYLKSLEEELKLAQVVPSKEIPQDVITMNSKVLLKDLDADEELTYSLVYPAD 82
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
AD+ +SI +P+ A++G +GD+++ P G ++ +L+
Sbjct: 83 ADLLEDKISILAPVGTAILGYRVGDVVNWKVPDGVVQLKVENILY 127
>gi|254231364|ref|ZP_04924691.1| transcription elongation factor greA (transcript cleavage factor
greA ) [Mycobacterium tuberculosis C]
gi|124600423|gb|EAY59433.1| transcription elongation factor greA (transcript cleavage factor
greA ) [Mycobacterium tuberculosis C]
Length = 110
Score = 42.4 bits (98), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + D+++ EL + RP I I++ R GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTQESHDRLKAELD-QLIANRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQL 67
Query: 67 ENIITRAEVIDISTMSG 83
+++++ A+V + SG
Sbjct: 68 QDLLSNAKVGEAPKQSG 84
>gi|183222143|ref|YP_001840139.1| putative transcription elongation factor [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189912206|ref|YP_001963761.1| transcription elongation factor [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167776882|gb|ABZ95183.1| Transcription elongation factor [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167780565|gb|ABZ98863.1| Putative transcription elongation factor [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 138
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 53/102 (51%)
Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
+N + + +L I RA+ +D + + + + + + + K +++V +++++
Sbjct: 27 RNKTDANVQDLLGEIERAQKVDSKQIPSNVVTMNSVIEIKNLEGIEFKEFRLVYPEDSNL 86
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SI +PIA A IG + GD+I N P G ++I ++ +
Sbjct: 87 DQNQISILAPIATASIGYKTGDVIFWNVPDGVYRFQITEIKY 128
>gi|299132174|ref|ZP_07025369.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2]
gi|298592311|gb|EFI52511.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2]
Length = 134
Score = 42.4 bits (98), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
I RAE+ D +A + V+ + G + +V ++ADV +G +S+ +PI A
Sbjct: 44 IERAEIRSADQSMRDIVAMQSEVTFRDDIGGQSRTVTLVYPEDADVGAGKISVLTPIGAA 103
Query: 130 LIGKELGDIISVNAP-GGEKTYEILQVL 156
LIG +G I P GG ++ + +VL
Sbjct: 104 LIGMSVGKSIEFQTPAGGWRSLTVTKVL 131
>gi|294010092|ref|YP_003543552.1| transcription elongation factor [Sphingobium japonicum UT26S]
gi|292673422|dbj|BAI94940.1| transcription elongation factor [Sphingobium japonicum UT26S]
Length = 156
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV-NAP 144
+AFG+ V+ + +G +K IVGD EA+ G ++ S+P+ARA++ E G+ + P
Sbjct: 85 VAFGSRVTY--RLNGREKRIDIVGDDEAEPAEGRIAFSAPLARAMMDAEEGETVDFAGKP 142
Query: 145 GG 146
G
Sbjct: 143 GA 144
>gi|42521926|ref|NP_967306.1| regulator of nucleoside diphosphate kinase [Bdellovibrio
bacteriovorus HD100]
gi|39574456|emb|CAE77960.1| regulator of nucleoside diphosphate kinase [Bdellovibrio
bacteriovorus HD100]
Length = 138
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 60 EGRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EG AE LE ++RA VI + + + + V +++ SG + +V Q+A ++ G
Sbjct: 29 EGPFAEALEEELSRANVIAQKEIPKNVVTMNSRVQFLDEVSGQESEMTLVYPQDAKLEEG 88
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE 147
+SI +P+ AL+G +G I+ P G+
Sbjct: 89 RLSILAPVGIALLGLSVGQEINWKLPNGQ 117
>gi|254000392|ref|YP_003052455.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4]
gi|313202349|ref|YP_004041007.1| grea/greb family elongation factor [Methylovorus sp. MP688]
gi|253987071|gb|ACT51928.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4]
gi|312441665|gb|ADQ85771.1| GreA/GreB family elongation factor [Methylovorus sp. MP688]
Length = 118
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%)
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R L + + RA V+ M D + + V+ V++++G + ++V +EA+++ G +S
Sbjct: 21 RHHALSDELDRAIVVPSEKMPPDIVGLNSRVTYVDESNGVSRTIELVLPEEANMEQGKIS 80
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
+ +P+ AL+G + G I P G
Sbjct: 81 VLAPVGTALLGLKAGQSIEWPFPNG 105
>gi|237746097|ref|ZP_04576577.1| GreA/GreB family elongation factor [Oxalobacter formigenes HOxBLS]
gi|229377448|gb|EEO27539.1| GreA/GreB family elongation factor [Oxalobacter formigenes HOxBLS]
Length = 140
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
ERP I + + NA+Y+ N MA+L+ + RA V++ + D
Sbjct: 13 ERPPITVTTHDYERLEQMLRNAKYR--------NIPGMADLQRELDRANVVEPEELPEDV 64
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
I +T ++ + D+ +V +AD S +S+ +P+ AL+G G I PG
Sbjct: 65 ITINSTARFIDDCTNDQYEITLVYPDKADGVSK-ISVLAPVGSALLGLSAGQSIPWQVPG 123
Query: 146 GEK 148
+K
Sbjct: 124 RQK 126
>gi|117619344|ref|YP_857300.1| regulator of nucleoside diphosphate kinase [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117560751|gb|ABK37699.1| regulator of nucleoside diphosphate kinase [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 131
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
N + L+ + RAE+ + + M D + +TV +SG++ +V ++
Sbjct: 22 NHPQHLALQEELDRAEMREPADMPPDVVTMNSTVRFKMPSSGNEFCLTLVYPKDVQGDES 81
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+S+ +P+ AL+G ++GD I+ P G EIL+V++
Sbjct: 82 KISVLAPVGSALLGLKVGDSIAWPGPAGRTIEVEILEVVY 121
>gi|206580755|ref|YP_002239725.1| regulator of nucleoside diphosphate kinase [Klebsiella pneumoniae
342]
gi|288936567|ref|YP_003440626.1| GreA/GreB family elongation factor [Klebsiella variicola At-22]
gi|290510377|ref|ZP_06549747.1| nucleoside diphosphate kinase regulator [Klebsiella sp. 1_1_55]
gi|206569813|gb|ACI11589.1| regulator of nucleoside diphosphate kinase [Klebsiella pneumoniae
342]
gi|288891276|gb|ADC59594.1| GreA/GreB family elongation factor [Klebsiella variicola At-22]
gi|289777093|gb|EFD85091.1| nucleoside diphosphate kinase regulator [Klebsiella sp. 1_1_55]
Length = 136
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA+++ M D + + V + SG+++ +V + + +S+ +P
Sbjct: 34 LNDELDRAQMLAPEAMPHDVVTMNSKVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAP 93
Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
+ AL+G ++G I PGG T+ E+L++L+
Sbjct: 94 VGAALLGLKVGSTIHWELPGGASTHLEVLELLY 126
>gi|160897843|ref|YP_001563425.1| GreA/GreB family elongation factor [Delftia acidovorans SPH-1]
gi|160363427|gb|ABX35040.1| GreA/GreB family elongation factor [Delftia acidovorans SPH-1]
Length = 134
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR A LE + RA+V++ M + + +TV SG +V +E D S V
Sbjct: 29 GREA-LEAELDRADVLEPKEMPPNVVTMNSTVRFTLLESGKSNTLTLVYPKEMDGSSDKV 87
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152
S+ +P+ AL+G +GD + P G+ T +
Sbjct: 88 SVFAPVGIALLGLSVGDQSRMAGPSGQVTVRV 119
>gi|30250064|ref|NP_842134.1| transcription elongation factor GreA/GreB [Nitrosomonas europaea
ATCC 19718]
gi|30139171|emb|CAD86041.1| Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas
europaea ATCC 19718]
Length = 137
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
QN GR +LE + RAEV+D + + +TV ++S ++ +V ++ D
Sbjct: 26 QNAFPGR-DDLEAELARAEVVDPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPKDVDT 84
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGG 146
+SI +P+ AL+G GD I PGG
Sbjct: 85 SGEKISILAPVGSALLGLAQGDEIEWPKPGG 115
>gi|83747221|ref|ZP_00944263.1| Regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
UW551]
gi|207721693|ref|YP_002252132.1| regulator of nucleoside diphosphate kinase protein [Ralstonia
solanacearum MolK2]
gi|207744206|ref|YP_002260598.1| regulator of nucleoside diphosphate kinase protein [Ralstonia
solanacearum IPO1609]
gi|83726045|gb|EAP73181.1| Regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
UW551]
gi|206586855|emb|CAQ17440.1| regulator of nucleoside diphosphate kinase protein [Ralstonia
solanacearum MolK2]
gi|206595611|emb|CAQ62538.1| regulator of nucleoside diphosphate kinase protein [Ralstonia
solanacearum IPO1609]
Length = 134
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++++I RA V+ + D + + V V SG + + +V EAD+ + +S+ SP
Sbjct: 33 VDDLIARANVVPGDKIPADVVTMNSVVR-VRAASGVAQQWTLVYPDEADLAAARLSVCSP 91
Query: 126 IARALIGKELGDIISVNAPGG 146
+ AL+G GD + AP G
Sbjct: 92 MGAALLGGRAGDAVHYVAPDG 112
>gi|260466738|ref|ZP_05812924.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum
WSM2075]
gi|259029468|gb|EEW30758.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum
WSM2075]
Length = 140
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL + + RA + D + M D + G+TV+ V GD + +V EAD+ +S+ +
Sbjct: 40 ELLSEMDRAVIADAAAMPADVVRMGSTVA-VSSEGGDIQRITLVYPGEADIAENRISVLT 98
Query: 125 PIARALIGKELGDIIS 140
P+ ALIG +G ++
Sbjct: 99 PMGTALIGAAIGQVVC 114
>gi|94312386|ref|YP_585596.1| GreA/GreB family elongation factor [Cupriavidus metallidurans CH34]
gi|93356238|gb|ABF10327.1| regulator of nucleoside diphosphate kinase [Cupriavidus
metallidurans CH34]
gi|222871747|gb|EEF08878.1| predicted protein [Populus trichocarpa]
Length = 145
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ RA ++ + D + + V + +++ +V +AD+ +G +S+ SP
Sbjct: 43 LDALLERAAIVSPDAIPKDVVTMNSRVVCALEGEAKPRDWTLVYPDDADLATGRLSVLSP 102
Query: 126 IARALIGKELGDIISVNAPGG 146
I +AL+G GD + P G
Sbjct: 103 IGQALLGARSGDTVDYRLPDG 123
>gi|238893687|ref|YP_002918421.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae
NTUH-K2044]
gi|238546003|dbj|BAH62354.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
Length = 136
Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA+++ M D + + V + SG+++ +V + + +S+ +P+ A
Sbjct: 38 LDRAQMLAPEAMPHDVVTMNSRVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAPVGAA 97
Query: 130 LIGKELGDIISVNAPGGEKTY-EILQVLW 157
L+G ++G I PGG T+ E+L++L+
Sbjct: 98 LLGLKVGSTIHWELPGGASTHLEVLELLY 126
>gi|152969224|ref|YP_001334333.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|262041289|ref|ZP_06014500.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330006064|ref|ZP_08305482.1| regulator of nucleoside diphosphate kinase [Klebsiella sp. MS 92-3]
gi|150954073|gb|ABR76103.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|259041405|gb|EEW42465.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328536002|gb|EGF62415.1| regulator of nucleoside diphosphate kinase [Klebsiella sp. MS 92-3]
Length = 140
Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA+++ M D + + V + SG+++ +V + + +S+ +P+ A
Sbjct: 42 LDRAQMLAPEAMPHDVVTMNSRVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAPVGAA 101
Query: 130 LIGKELGDIISVNAPGGEKTY-EILQVLW 157
L+G ++G I PGG T+ E+L++L+
Sbjct: 102 LLGLKVGSTIHWELPGGASTHLEVLELLY 130
>gi|307293531|ref|ZP_07573375.1| transcription elongation factor GreA/GreB domain-containing protein
[Sphingobium chlorophenolicum L-1]
gi|306879682|gb|EFN10899.1| transcription elongation factor GreA/GreB domain-containing protein
[Sphingobium chlorophenolicum L-1]
Length = 156
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+AFG+ V+ + +G +K +VGD EA+ G ++ S+P+ARA++ E G+ +
Sbjct: 85 VAFGSRVTY--RLNGKEKRIDLVGDDEAEPAEGRIAFSAPLARAMMDAEEGEAVDFGGKP 142
Query: 146 G 146
G
Sbjct: 143 G 143
>gi|294634651|ref|ZP_06713184.1| regulator of nucleoside diphosphate kinase [Edwardsiella tarda ATCC
23685]
gi|291091897|gb|EFE24458.1| regulator of nucleoside diphosphate kinase [Edwardsiella tarda ATCC
23685]
Length = 140
Score = 42.0 bits (97), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E E+ Q LNE EL+ RA+++ M D +
Sbjct: 7 RPAIIINELDAERLDRLLERPEFANQPIAQALNE----ELD----RAQLLAPEAMPTDVV 58
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ V + +S ++ ++ D + GL S+ +PI AL+G +GD I + P
Sbjct: 59 TMNSRVRFRDLSSNEEHVRTLIYPHLPNDAEDGL-SVMAPIGAALLGLHVGDAIRWHLPN 117
Query: 146 GEKTY-EILQVLW 157
G +T+ E+L +L+
Sbjct: 118 GSQTHIEVLALLY 130
>gi|221065879|ref|ZP_03541984.1| GreA/GreB family elongation factor [Comamonas testosteroni KF-1]
gi|220710902|gb|EED66270.1| GreA/GreB family elongation factor [Comamonas testosteroni KF-1]
Length = 135
Score = 42.0 bits (97), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR A LE + RA+V+D + M + + +TV G +V ++ D + V
Sbjct: 30 GRDA-LEAELDRADVLDPAEMPANVVTMNSTVRFTMLEIGKSSTLTLVYPKDMDGSADKV 88
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152
SI +P+ AL+G +GD + +P G+ T +
Sbjct: 89 SIFAPVGIALLGLSVGDEFKMPSPTGQVTVRV 120
>gi|213582301|ref|ZP_03364127.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 62
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDL 43
IP+T +G +K+++EL + + RP II AI+EAR +GDL
Sbjct: 4 IPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDL 42
>gi|153004547|ref|YP_001378872.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
gi|152028120|gb|ABS25888.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
Length = 138
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 59 NEGRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
+ R AE L+ + RA + I D + A V+ V+ SG ++ +V ++ADV +
Sbjct: 28 RDARAAEQLDAELDRA--VPIEVAPPDLVTMNARVAFVDLASGVRRELVLVYPRDADVAA 85
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146
G VS+ +PI AL+G +G+ I P G
Sbjct: 86 GRVSVLAPIGAALLGLSVGEEIDWPLPDG 114
>gi|73542981|ref|YP_297501.1| transcription elongation factor GreA/GreB region [Ralstonia
eutropha JMP134]
gi|72120394|gb|AAZ62657.1| Prokaryotic transcription elongation factor GreA/GreB region
[Ralstonia eutropha JMP134]
Length = 139
Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 61 GRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
G MA+ L+ ++ RA ++ + D + + + + + + +V EAD +G
Sbjct: 31 GPMADMLDALLARAAIVAPQDIPTDVVTMNSRLVCALQGDATPRLWTLVYPDEADFDAGR 90
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTY 150
+S+ SP+ +AL+G G+ +S P G + +
Sbjct: 91 LSVLSPVGQALLGARAGETVSYRLPDGREQH 121
>gi|74095577|emb|CAJ27343.1| conserved hypothetical protein [Cronobacter sakazakii]
Length = 136
Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA ++ M D + + V + SG+ +V Q A +S+ +P
Sbjct: 34 LNDELDRARMVSPQAMPEDVVTMNSRVKFSDLASGETYERLLVYPQNAGSSPEALSVMAP 93
Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
+ AL+G +GD I P G +T+ E+L++L+
Sbjct: 94 VGAALLGLRVGDAIRWPLPDGSETHIEVLELLY 126
>gi|145298530|ref|YP_001141371.1| transcription elongation factor GreA/GreB [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142851302|gb|ABO89623.1| transcription elongation factor GreA/GreB [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 131
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
N + L+ + RAE+ + + M D + +TV +NS ++ +V ++
Sbjct: 22 NHPQHLALQEELDRAEMREPADMPPDVVTMNSTVRFKMQNSENEFCLTLVYPKDVQGDES 81
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+S+ +P+ AL+G ++GD I+ P G EIL+V++
Sbjct: 82 RISVLAPVGSALLGLKVGDSIAWPGPAGRTIQVEILEVVY 121
>gi|121595126|ref|YP_987022.1| GreA/GreB family elongation factor [Acidovorax sp. JS42]
gi|120607206|gb|ABM42946.1| GreA/GreB family elongation factor [Acidovorax sp. JS42]
Length = 135
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR A LE + RA+V D M + + +TV +G +V +E D V
Sbjct: 30 GREA-LEAELDRADVFDPKDMPPNVVTMNSTVRFTLLETGKTNTLTLVYPKEMDGSGDKV 88
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152
S+ +P+ AL+G +GD + +P G+ T +
Sbjct: 89 SVFAPVGIALLGLGVGDEFQMPSPTGQVTVRV 120
>gi|156934868|ref|YP_001438784.1| nucleoside diphosphate kinase regulator [Cronobacter sakazakii ATCC
BAA-894]
gi|156533122|gb|ABU77948.1| hypothetical protein ESA_02716 [Cronobacter sakazakii ATCC BAA-894]
Length = 136
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA ++ M D + + V + SG+ +V Q A +S+ +P
Sbjct: 34 LNDELDRARMVSPQAMPEDVVTMNSRVKFRDLASGETYERLLVYPQNAGSSPEALSVMAP 93
Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
+ AL+G +GD I P G +T+ E+L++L+
Sbjct: 94 VGAALLGLRVGDAIRWPLPDGSETHIEVLELLY 126
>gi|194291135|ref|YP_002007042.1| regulator of nucleoside diphosphate kinase [Cupriavidus taiwanensis
LMG 19424]
gi|193224970|emb|CAQ70981.1| regulator of nucleoside diphosphate kinase [Cupriavidus taiwanensis
LMG 19424]
Length = 139
Score = 41.6 bits (96), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L++++ RA ++ + D + V +N+ +V AD +G +S+ SP
Sbjct: 37 LDSLLARATIVAPEEIPTDVVTMNTRVVCTLPGEQAPRNWTLVYPDAADFDAGRLSVLSP 96
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ +AL+G G+ +S P G +
Sbjct: 97 VGQALLGARAGETVSYRLPDGRE 119
>gi|222111468|ref|YP_002553732.1| grea/greb family elongation factor [Acidovorax ebreus TPSY]
gi|221730912|gb|ACM33732.1| GreA/GreB family elongation factor [Acidovorax ebreus TPSY]
Length = 135
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR A LE + RA+V D M + + +TV +G +V +E D V
Sbjct: 30 GREA-LEAELDRADVFDPKDMPPNVVTMNSTVRFTLLETGKTNTLTLVYPKEMDGSGDKV 88
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152
S+ +P+ AL+G +GD + +P G+ T +
Sbjct: 89 SVFAPVGIALLGLGVGDEFQMPSPTGQVTVRV 120
>gi|326802507|ref|YP_004320326.1| GreA/GreB family elongation factor [Sphingobacterium sp. 21]
gi|326553271|gb|ADZ81656.1| GreA/GreB family elongation factor [Sphingobacterium sp. 21]
Length = 124
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%)
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
RA+V+ + +R+ + V + + +S + ++IV AD++ +S+ +P+ ALI
Sbjct: 40 RAKVLAKDAIEKERVKLNSQVMVKDLDSQNTMVFRIVTPDLADMKQQKISVLTPMGSALI 99
Query: 132 GKELGDIISVNAPGGEKTYEILQV 155
G + GD + P G K Y IL+V
Sbjct: 100 GFKEGDQVEWKMPIGIKRYVILKV 123
>gi|332995758|gb|AEF05813.1| transcription elongation factor GreB [Alteromonas sp. SN2]
Length = 87
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135
+D S +++ FGA V +E G ++VG E + +SI SP+ARAL+GKE
Sbjct: 1 MDYSPEQENKVYFGAWVE-IENEQGQVLELRLVGYDEIFGRRDYISIDSPMARALVGKEE 59
Query: 136 GDIISVNAPGGEKTYEI 152
D I+V K + I
Sbjct: 60 DDDITVKTETDVKEWWI 76
>gi|37527898|ref|NP_931243.1| nucleoside diphosphate kinase regulator [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36787334|emb|CAE16418.1| Regulator of nucleoside diphosphate kinase [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 136
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAE++ + + D + + V ++ S +++ +V S +S+ +P+ A
Sbjct: 38 LDRAEIVPPAEIPSDVVTMNSRVRFIDLTSNEERVRTLVYPASLQDSSDQLSVMAPLGAA 97
Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157
L+G +GD IS P GE+T ++L++L+
Sbjct: 98 LLGLRIGDEISWELPNGEETRVKVLELLY 126
>gi|291300234|ref|YP_003511512.1| GreA/GreB family elongation factor [Stackebrandtia nassauensis DSM
44728]
gi|290569454|gb|ADD42419.1| GreA/GreB family elongation factor [Stackebrandtia nassauensis DSM
44728]
Length = 152
Score = 41.6 bits (96), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 53/102 (51%), Gaps = 7/102 (6%)
Query: 52 AKELQNLNEGRM--AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIV 108
A+ELQ + + ++ A +E + R + +T D + G+TV++ + S D +
Sbjct: 47 AQELQRVTDLQLLDARVEKLTARLDASATATQGRTDLVDVGSTVTI--RFSDDTTETLHI 104
Query: 109 GDQEADVQSGL-VSISSPIARALIGKELGDIISVNAPGGEKT 149
G + ADV L V+ SP+ RAL+G GD +S N P G T
Sbjct: 105 G-EIADVDDQLLVTAGSPLGRALLGHRAGDTVSYNTPSGHAT 145
>gi|255531969|ref|YP_003092341.1| transcription elongation factor GreA/GreB domain-containing protein
[Pedobacter heparinus DSM 2366]
gi|255344953|gb|ACU04279.1| transcription elongation factor GreA/GreB domain protein
[Pedobacter heparinus DSM 2366]
Length = 125
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 41/75 (54%)
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
+ D + + + +G + +++V +EA++++ VS+ +PI AL G GD I+
Sbjct: 48 LPSDVVCLKSEARIANVKTGKEFTFKLVMPEEANIKAQKVSVFAPIGIALFGYRTGDSIN 107
Query: 141 VNAPGGEKTYEILQV 155
P G + ++IL+V
Sbjct: 108 WEMPDGIQEFKILEV 122
>gi|330820196|ref|YP_004349058.1| GreA/GreB family elongation factor [Burkholderia gladioli BSR3]
gi|327372191|gb|AEA63546.1| GreA/GreB family elongation factor [Burkholderia gladioli BSR3]
Length = 132
Score = 41.6 bits (96), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 45/83 (54%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L+ ++ RA++++ M + + + +L ++ + + + +V +A +G +++
Sbjct: 28 AMLDTLLERADIVNADAMKANVVTMNSQFTLTDEATHEAITWTLVYPDQARSDAGRLNVF 87
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ AL+G G+ +++ P G
Sbjct: 88 SPVGMALLGARQGEHVNITLPNG 110
>gi|253991158|ref|YP_003042514.1| nucleoside diphosphate kinase regulator [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253782608|emb|CAQ85772.1| regulator of nucleoside diphosphate kinase [Photorhabdus
asymbiotica]
Length = 136
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAE++ + + D + + V ++ S +++ +V S +S+ +P+ A
Sbjct: 38 LDRAEIVPPAEIPSDVVTMNSRVRFLDLTSSEERVRTLVYPASLQDSSNQLSVMAPLGAA 97
Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157
L+G +GD IS P GE+T ++L++L+
Sbjct: 98 LLGLRIGDEISWKLPNGEETRVKVLELLY 126
>gi|119897107|ref|YP_932320.1| putative regulator of nucleoside diphosphate kinase [Azoarcus sp.
BH72]
gi|119669520|emb|CAL93433.1| putative regulator of nucleoside diphosphate kinase [Azoarcus sp.
BH72]
Length = 135
Score = 41.6 bits (96), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA+V + M D I + E+ SG + + ++AD +G VS+ SP A
Sbjct: 37 LDRADVREPEEMPADVITMNSRARFREETSGREYELTLAYPKDADGAAGKVSVFSPAGSA 96
Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157
L+G G I P G ++L+V+W
Sbjct: 97 LLGLAAGQAIDWRTPEGSAIRLQVLEVVW 125
>gi|260597037|ref|YP_003209608.1| nucleoside diphosphate kinase regulator [Cronobacter turicensis
z3032]
gi|260216214|emb|CBA29098.1| Regulator of nucleoside diphosphate kinase [Cronobacter turicensis
z3032]
Length = 136
Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA ++ M D + + V + SG+ +V Q A +S+ +P
Sbjct: 34 LNDELDRARMVSPQAMPEDVVTMNSRVKFRDLASGETYERLLVYPQNAGNSPEALSVMAP 93
Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
+ AL+G +GD I P G +T+ E+L++L+
Sbjct: 94 VGAALLGLRVGDAIRWPLPDGSETHIEVLELLY 126
>gi|306841739|ref|ZP_07474425.1| nucleoside diphosphate kinase regulator [Brucella sp. BO2]
gi|306288144|gb|EFM59531.1| nucleoside diphosphate kinase regulator [Brucella sp. BO2]
Length = 169
Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
A++ + + E MAEL+ RA+V+ + + + G+TV N G ++ +V
Sbjct: 27 NASERFEEIAEELMAELD----RAKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 81
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
EAD+ +SI +PI ALIG G IS A G++ +L+V+
Sbjct: 82 PGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 129
>gi|319426662|gb|ADV54736.1| regulator of nucleoside diphosphate kinase, Rnk [Shewanella
putrefaciens 200]
Length = 135
Score = 41.2 bits (95), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
N G+MA LE + RAE++ + M + + + V +S D ++V ++A+ +
Sbjct: 26 NAFPGKMA-LEAELDRAEIVPATEMPDNVVTMNSLVKFSVSSSNDTFCLRLVYPKDANGE 84
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146
G +SI +P+ AL+G GD I PGG
Sbjct: 85 -GTISILAPVGSALLGLSQGDDIEWPGPGG 113
>gi|237748358|ref|ZP_04578838.1| GreA/GreB family elongation factor [Oxalobacter formigenes OXCC13]
gi|229379720|gb|EEO29811.1| GreA/GreB family elongation factor [Oxalobacter formigenes OXCC13]
Length = 130
Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 60/115 (52%), Gaps = 7/115 (6%)
Query: 46 NAEYQAAKELQNLNEGR----MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101
+ +Y+ ++ LN+ R + EL++ + RA V++ + D I +T +++ S +
Sbjct: 11 SCDYERLTQMLMLNKYRTLPGIDELQDELDRANVVEPEELPNDVITINSTARFLDETSNE 70
Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +V +AD + +S+ +P+ AL+G +G I PG +K +L+VL
Sbjct: 71 QFEITLVYPDKADGATK-ISVLAPVGSALLGMSVGQSIPWQVPGRQKL--LLKVL 122
>gi|302755804|ref|XP_002961326.1| hypothetical protein SELMODRAFT_403115 [Selaginella moellendorffii]
gi|300172265|gb|EFJ38865.1| hypothetical protein SELMODRAFT_403115 [Selaginella moellendorffii]
Length = 413
Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 14/107 (13%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
TS+GF ++ +E+ + E+ P + + + + A+ +L E E + K L N ++ + +
Sbjct: 321 TSQGFPRVLEEILY--TEKNPEVARLMFQFEAFCNLVEPNE-KTCKLLAN----KLLQKD 373
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
+I VID + + SL+EK+ GD++N + GD+E+D
Sbjct: 374 MVIEAQFVIDTCCRTHPK-------SLIEKDFGDEENEEHFGDEESD 413
>gi|256829378|ref|YP_003158106.1| GreA/GreB family elongation factor [Desulfomicrobium baculatum DSM
4028]
gi|256578554|gb|ACU89690.1| GreA/GreB family elongation factor [Desulfomicrobium baculatum DSM
4028]
Length = 137
Score = 41.2 bits (95), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A LE + RA ++D + + +TV +G++ +V D Q +SI
Sbjct: 33 AALEEELDRARIVDPKNVPPTVVTMNSTVKFKLMPAGEEFCLTLVYPGRVDDQGTTISIL 92
Query: 124 SPIARALIGKELGDIISVNAPGG 146
+P+ AL+G LGD I PGG
Sbjct: 93 APVGSALLGLSLGDEIQWPRPGG 115
>gi|114328079|ref|YP_745236.1| transcription elongation factor greB [Granulibacter bethesdensis
CGDNIH1]
gi|114316253|gb|ABI62313.1| transcription elongation factor greB [Granulibacter bethesdensis
CGDNIH1]
Length = 164
Score = 41.2 bits (95), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
A+++ + + + +AFG TV L K G Y+IVG+ EAD + GL+S +SP
Sbjct: 80 AQLVPTAPENAEEVAFGDTVKL--KLGGRTVTYRIVGEDEADPKQGLISYASP 130
>gi|254695666|ref|ZP_05157494.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 3
str. Tulya]
gi|261216066|ref|ZP_05930347.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 3
str. Tulya]
gi|260917673|gb|EEX84534.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 3
str. Tulya]
Length = 169
Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
A++ + + E MAEL+ RA+V+ + + + G+TV N G ++ +V
Sbjct: 27 NASERFEEIAEELMAELD----RAKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 81
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
EAD+ +SI +PI ALIG G IS A G++ +L+V+
Sbjct: 82 PGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 129
>gi|23500358|ref|NP_699798.1| nucleoside diphosphate kinase regulator [Brucella suis 1330]
gi|62317530|ref|YP_223383.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 1
str. 9-941]
gi|161620676|ref|YP_001594562.1| nucleoside diphosphate kinase regulator [Brucella canis ATCC 23365]
gi|225629104|ref|ZP_03787137.1| nucleoside diphosphate kinase regulator [Brucella ceti str. Cudo]
gi|254691027|ref|ZP_05154281.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 6
str. 870]
gi|254698811|ref|ZP_05160639.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 2
str. 86/8/59]
gi|254699850|ref|ZP_05161678.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 5 str.
513]
gi|254702988|ref|ZP_05164816.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 3 str.
686]
gi|254705890|ref|ZP_05167718.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
M163/99/10]
gi|254711118|ref|ZP_05172929.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
B2/94]
gi|254712423|ref|ZP_05174234.1| nucleoside diphosphate kinase regulator [Brucella ceti M644/93/1]
gi|254715495|ref|ZP_05177306.1| nucleoside diphosphate kinase regulator [Brucella ceti M13/05/1]
gi|254732258|ref|ZP_05190836.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 4
str. 292]
gi|256015391|ref|YP_003105400.1| nucleoside diphosphate kinase regulator [Brucella microti CCM 4915]
gi|256029499|ref|ZP_05443113.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
M292/94/1]
gi|256157694|ref|ZP_05455612.1| nucleoside diphosphate kinase regulator [Brucella ceti M490/95/1]
gi|256253334|ref|ZP_05458870.1| nucleoside diphosphate kinase regulator [Brucella ceti B1/94]
gi|256256212|ref|ZP_05461748.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 9
str. C68]
gi|260167410|ref|ZP_05754221.1| nucleoside diphosphate kinase regulator [Brucella sp. F5/99]
gi|260568099|ref|ZP_05838568.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
suis bv. 4 str. 40]
gi|260756623|ref|ZP_05868971.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 6
str. 870]
gi|260760053|ref|ZP_05872401.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 4
str. 292]
gi|260763292|ref|ZP_05875624.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 2
str. 86/8/59]
gi|260882440|ref|ZP_05894054.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 9
str. C68]
gi|261217230|ref|ZP_05931511.1| nucleoside diphosphate kinase regulator [Brucella ceti M13/05/1]
gi|261220450|ref|ZP_05934731.1| nucleoside diphosphate kinase regulator [Brucella ceti B1/94]
gi|261313320|ref|ZP_05952517.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
M163/99/10]
gi|261318709|ref|ZP_05957906.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
B2/94]
gi|261320101|ref|ZP_05959298.1| nucleoside diphosphate kinase regulator [Brucella ceti M644/93/1]
gi|261750323|ref|ZP_05994032.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 5 str.
513]
gi|261753597|ref|ZP_05997306.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 3 str.
686]
gi|261756820|ref|ZP_06000529.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
F5/99]
gi|265986507|ref|ZP_06099064.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
M292/94/1]
gi|265996199|ref|ZP_06108756.1| nucleoside diphosphate kinase regulator [Brucella ceti M490/95/1]
gi|294853589|ref|ZP_06794261.1| nucleoside diphosphate kinase regulator [Brucella sp. NVSL 07-0026]
gi|297249569|ref|ZP_06933270.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 5
str. B3196]
gi|23463975|gb|AAN33803.1| transcriptional regulator Rnk, putative [Brucella suis 1330]
gi|62197723|gb|AAX76022.1| hypothetical Rnk transcriptional regulator [Brucella abortus bv. 1
str. 9-941]
gi|161337487|gb|ABX63791.1| GreA/GreB family elongation factor [Brucella canis ATCC 23365]
gi|225615600|gb|EEH12649.1| nucleoside diphosphate kinase regulator [Brucella ceti str. Cudo]
gi|255998051|gb|ACU49738.1| nucleoside diphosphate kinase regulator [Brucella microti CCM 4915]
gi|260154764|gb|EEW89845.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
suis bv. 4 str. 40]
gi|260670371|gb|EEX57311.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 4
str. 292]
gi|260673713|gb|EEX60534.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 2
str. 86/8/59]
gi|260676731|gb|EEX63552.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 6
str. 870]
gi|260871968|gb|EEX79037.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 9
str. C68]
gi|260919034|gb|EEX85687.1| nucleoside diphosphate kinase regulator [Brucella ceti B1/94]
gi|260922319|gb|EEX88887.1| nucleoside diphosphate kinase regulator [Brucella ceti M13/05/1]
gi|261292791|gb|EEX96287.1| nucleoside diphosphate kinase regulator [Brucella ceti M644/93/1]
gi|261297932|gb|EEY01429.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
B2/94]
gi|261302346|gb|EEY05843.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
M163/99/10]
gi|261736804|gb|EEY24800.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
F5/99]
gi|261740076|gb|EEY28002.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 5 str.
513]
gi|261743350|gb|EEY31276.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 3 str.
686]
gi|262550496|gb|EEZ06657.1| nucleoside diphosphate kinase regulator [Brucella ceti M490/95/1]
gi|264658704|gb|EEZ28965.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
M292/94/1]
gi|294819244|gb|EFG36244.1| nucleoside diphosphate kinase regulator [Brucella sp. NVSL 07-0026]
gi|297173438|gb|EFH32802.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 5
str. B3196]
Length = 169
Score = 41.2 bits (95), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
A++ + + E MAEL+ RA+V+ + + + G+TV N G ++ +V
Sbjct: 27 NASERFEEIAEELMAELD----RAKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 81
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
EAD+ +SI +PI ALIG G IS A G++ +L+V+
Sbjct: 82 PGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 129
>gi|159043110|ref|YP_001531904.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12]
gi|157910870|gb|ABV92303.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12]
Length = 143
Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
I RA ++ S M + ++ G+ V+ ++ +G +K+ +V +EAD+ VS+++PI A
Sbjct: 50 IARARIVAPSKMPKNVVSMGSRVTYRDEATGQEKSVTLVYPEEADIARLRVSVTTPIGVA 109
Query: 130 LIG 132
L+G
Sbjct: 110 LLG 112
>gi|254720401|ref|ZP_05182212.1| nucleoside diphosphate kinase regulator [Brucella sp. 83/13]
gi|265985419|ref|ZP_06098154.1| nucleoside diphosphate kinase regulator [Brucella sp. 83/13]
gi|306839022|ref|ZP_07471843.1| nucleoside diphosphate kinase regulator [Brucella sp. NF 2653]
gi|264664011|gb|EEZ34272.1| nucleoside diphosphate kinase regulator [Brucella sp. 83/13]
gi|306405928|gb|EFM62186.1| nucleoside diphosphate kinase regulator [Brucella sp. NF 2653]
Length = 170
Score = 41.2 bits (95), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
A++ + + E MAEL+ RA+V+ + + + G+TV N G ++ +V
Sbjct: 27 NASERFEEIAEELMAELD----RAKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 81
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
EAD+ +SI +PI ALIG G IS A G++ +L+V+
Sbjct: 82 PGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 129
>gi|83269510|ref|YP_418801.1| nucleoside diphosphate kinase regulator [Brucella melitensis biovar
Abortus 2308]
gi|189022785|ref|YP_001932526.1| nucleoside diphosphate kinase regulator [Brucella abortus S19]
gi|237817078|ref|ZP_04596070.1| nucleoside diphosphate kinase regulator [Brucella abortus str. 2308
A]
gi|260544766|ref|ZP_05820587.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus NCTC 8038]
gi|82939784|emb|CAJ12792.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
melitensis biovar Abortus 2308]
gi|189021359|gb|ACD74080.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus S19]
gi|237787891|gb|EEP62107.1| nucleoside diphosphate kinase regulator [Brucella abortus str. 2308
A]
gi|260098037|gb|EEW81911.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus NCTC 8038]
Length = 169
Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
A++ + + E MAEL+ RA+V+ + + + G+TV N G ++ +V
Sbjct: 27 NASERFEEIAEELMAELD----RAKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 81
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
EAD+ +SI +PI ALIG G IS A G++ +L+V+
Sbjct: 82 PGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 129
>gi|217969327|ref|YP_002354561.1| GreA/GreB family elongation factor [Thauera sp. MZ1T]
gi|217506654|gb|ACK53665.1| GreA/GreB family elongation factor [Thauera sp. MZ1T]
Length = 135
Score = 41.2 bits (95), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+G AELE RA+V + M D I + VE+ +G + + ++A+ ++
Sbjct: 31 DGLRAELE----RADVREPQDMPADVITMNSRARFVEEGTGREYELTLAYPKDANAEAHR 86
Query: 120 VSISSPIARALIGKELGDIIS-VNAPGGEKTYEILQVLW 157
VSI SP AL+G G I +A G E ++L+V W
Sbjct: 87 VSIFSPAGSALLGLSAGQSIDWKSADGKEIRLKVLEVTW 125
>gi|330830261|ref|YP_004393213.1| transcription elongation factor GreA/GreB [Aeromonas veronii B565]
gi|328805397|gb|AEB50596.1| Transcription elongation factor GreA/GreB [Aeromonas veronii B565]
Length = 131
Score = 41.2 bits (95), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + RAE+ + + M D + + V ++SG++ +V ++A +S+ +P
Sbjct: 29 LQEELDRAEIREPADMPPDVVTMNSKVRFKMQSSGNEFCLTLVYPRDAKGDESNISVLAP 88
Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+ AL+G ++GD I+ P G EIL+V++
Sbjct: 89 VGSALLGLKVGDSIAWPGPAGRTIEVEILEVVY 121
>gi|306845947|ref|ZP_07478514.1| nucleoside diphosphate kinase regulator [Brucella sp. BO1]
gi|306273582|gb|EFM55427.1| nucleoside diphosphate kinase regulator [Brucella sp. BO1]
Length = 169
Score = 41.2 bits (95), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
A++ + + E MAEL+ RA+V+ + + + G+TV N G ++ +V
Sbjct: 27 NASERFEEIAEELMAELD----RAKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 81
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
EAD+ +SI +PI ALIG G IS A G++ +L+V+
Sbjct: 82 PGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 129
>gi|319653573|ref|ZP_08007672.1| hypothetical protein HMPREF1013_04289 [Bacillus sp. 2_A_57_CT2]
gi|317394772|gb|EFV75511.1| hypothetical protein HMPREF1013_04289 [Bacillus sp. 2_A_57_CT2]
Length = 149
Score = 40.8 bits (94), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%)
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
++ G V+++ D+++Y I ++D +G +S SP+ R L+ K +G+ S+ P
Sbjct: 71 KVLIGTKVTVLFDGEDDREDYHICLPDQSDPDNGCISFLSPVGRQLLLKNMGEQTSLIIP 130
Query: 145 GGE 147
G+
Sbjct: 131 SGQ 133
>gi|113969979|ref|YP_733772.1| GreA/GreB family elongation factor [Shewanella sp. MR-4]
gi|114047214|ref|YP_737764.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
gi|113884663|gb|ABI38715.1| GreA/GreB family elongation factor [Shewanella sp. MR-4]
gi|113888656|gb|ABI42707.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
Length = 135
Score = 40.8 bits (94), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
N GR A LE + RA+++ + M G+ + + V +S D ++V ++A
Sbjct: 26 NAFPGRTA-LEAELDRADIVPAAQMPGNVVTMNSEVKFSVSSSNDTFCLRLVYPKDA-TG 83
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146
G +SI +P+ AL+G GD I PGG
Sbjct: 84 EGTISILAPVGSALLGLSQGDEIEWPGPGG 113
>gi|227328600|ref|ZP_03832624.1| transcription elongation factor GreA [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 79
Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDL 43
+ + P+T +G +K+++EL + RP II AI+EAR +GDL
Sbjct: 1 MKQFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDL 42
>gi|159042970|ref|YP_001531764.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12]
gi|157910730|gb|ABV92163.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12]
Length = 148
Score = 40.8 bits (94), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
I RA ++ + M + I G + + ++ +G ++ +V ++AD+ VS+ +PI A
Sbjct: 53 IARARIVPAAKMPLNVIGIGKSATFRDETTGQERTVTLVYPEDADISRARVSVMTPIGVA 112
Query: 130 LIGKELGDIISVNAPGGEK 148
L+G G + N G E+
Sbjct: 113 LLGLAEGAVFHWNTRGEER 131
>gi|149243253|pdb|2PN0|A Chain A, Prokaryotic Transcription Elongation Factor GreaGREB FROM
Nitrosomonas Europaea
gi|149243254|pdb|2PN0|B Chain B, Prokaryotic Transcription Elongation Factor GreaGREB FROM
Nitrosomonas Europaea
gi|149243255|pdb|2PN0|C Chain C, Prokaryotic Transcription Elongation Factor GreaGREB FROM
Nitrosomonas Europaea
gi|149243256|pdb|2PN0|D Chain D, Prokaryotic Transcription Elongation Factor GreaGREB FROM
Nitrosomonas Europaea
Length = 141
Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
QN GR +LE + RAEV+D + + +TV ++S ++ +V ++ D
Sbjct: 28 QNAFPGR-DDLEAELARAEVVDPEEIPPTVVTXNSTVRFRVESSAEEFXLTLVYPKDVDT 86
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGG 146
+SI +P+ AL+G GD I PGG
Sbjct: 87 SGEKISILAPVGSALLGLAQGDEIEWPKPGG 117
>gi|84499314|ref|ZP_00997602.1| putative nucleoside diphosphate kinase regulator [Oceanicola
batsensis HTCC2597]
gi|84392458|gb|EAQ04669.1| putative nucleoside diphosphate kinase regulator [Oceanicola
batsensis HTCC2597]
Length = 147
Score = 40.8 bits (94), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 2/89 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
I RA ++ + + + +A G V+ ++ +G +K V ++AD+ G +SI +PI A
Sbjct: 49 IGRARIVPAAKLPQNVVAIGRAVTYRDETTGQEKRVTPVFPEDADIARGRISILTPIGVA 108
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVLWI 158
LIG G + + GE+ +L VL +
Sbjct: 109 LIGLAEGASLHWDTRDGER--RVLTVLHV 135
>gi|332186877|ref|ZP_08388619.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Sphingomonas sp. S17]
gi|332013210|gb|EGI55273.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Sphingomonas sp. S17]
Length = 154
Score = 40.8 bits (94), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 65 ELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
EL TRA +++ D + G+ V++ + +G K IVG EAD ++ +
Sbjct: 63 ELRYWNTRAATAELAPAPAEDEVGIGSVVTI--RLNGQTKALTIVGHDEADPSQDRIAYA 120
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+P+ARAL+G G++++ G EIL V
Sbjct: 121 APLARALMGAMAGEMVAFG--GKADAVEILDV 150
>gi|260430269|ref|ZP_05784243.1| GreA/GreB family elongation factor [Citreicella sp. SE45]
gi|260418741|gb|EEX11997.1| GreA/GreB family elongation factor [Citreicella sp. SE45]
Length = 147
Score = 40.4 bits (93), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
I RA ++ + + + +A G V+ ++++G +K V ++AD+ G +SI +PI A
Sbjct: 49 IGRARIVPAAKLPQNVVAIGRAVTYRDESNGQEKTVTPVFPEDADIARGRISILTPIGVA 108
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVLWI 158
LIG G + + GE+ +L VL +
Sbjct: 109 LIGLAEGASLHWDTRDGER--RVLTVLHV 135
>gi|310822870|ref|YP_003955228.1| transcription elongation factor [Stigmatella aurantiaca DW4/3-1]
gi|309395942|gb|ADO73401.1| Transcription elongation factor [Stigmatella aurantiaca DW4/3-1]
Length = 144
Score = 40.4 bits (93), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
+ L+ +LE + RA V+ + D + + V + ++G ++ +V +E
Sbjct: 29 RHLEGTKAAAAEQLELELDRARVVRQEQIPPDIVTMRSRVLFEDLDTGRRREASLVYPEE 88
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
A++ VSI +P+ A++G ++GDII P IL+VL+
Sbjct: 89 ANIDQSRVSILAPVGLAVLGLQVGDIIEWPLPNERLGKLRILEVLY 134
>gi|315127894|ref|YP_004069897.1| regulator of nucleoside diphosphate kinase [Pseudoalteromonas sp.
SM9913]
gi|315016408|gb|ADT69746.1| regulator of nucleoside diphosphate kinase [Pseudoalteromonas sp.
SM9913]
Length = 137
Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELE + RA +++ + + +TV+ V +++G++ +V + D +SI +
Sbjct: 34 ELEAELGRANIVEPHEVPSTVVTMNSTVNFVVESTGEEFTLTLVYPKNIDSSGNKISILA 93
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ AL+G GD I PGG
Sbjct: 94 PVGSALLGLSQGDQIEWPKPGG 115
>gi|70733293|ref|YP_263067.1| nucleoside diphosphate kinase regulator [Pseudomonas fluorescens
Pf-5]
gi|68347592|gb|AAY95198.1| regulator of nucleoside diphosphate kinase [Pseudomonas fluorescens
Pf-5]
Length = 137
Score = 40.4 bits (93), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ + V E++SG + +V Q+A+ G +SI +P+ AL+G ++G I APG
Sbjct: 55 VTMNSRVHCREESSGKDYHLTLVYPQDANADEGKISILAPVGSALLGLQVGQYIDWPAPG 114
Query: 146 GE 147
G+
Sbjct: 115 GK 116
>gi|115377129|ref|ZP_01464343.1| regulator of nucleoside diphosphate kinase [Stigmatella aurantiaca
DW4/3-1]
gi|115365838|gb|EAU64859.1| regulator of nucleoside diphosphate kinase [Stigmatella aurantiaca
DW4/3-1]
Length = 149
Score = 40.4 bits (93), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
+ L+ +LE + RA V+ + D + + V + ++G ++ +V +E
Sbjct: 34 RHLEGTKAAAAEQLELELDRARVVRQEQIPPDIVTMRSRVLFEDLDTGRRREASLVYPEE 93
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
A++ VSI +P+ A++G ++GDII P IL+VL+
Sbjct: 94 ANIDQSRVSILAPVGLAVLGLQVGDIIEWPLPNERLGKLRILEVLY 139
>gi|297581555|ref|ZP_06943478.1| transcription elongation factor GreB [Vibrio cholerae RC385]
gi|297534393|gb|EFH73231.1| transcription elongation factor GreB [Vibrio cholerae RC385]
Length = 47
Score = 40.4 bits (93), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 30/42 (71%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
+T G++K++QEL + +E+RP I + +S A + GD SENA+
Sbjct: 6 ITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENAD 47
>gi|15964020|ref|NP_384373.1| nucleoside diphosphate kinase regulator [Sinorhizobium meliloti
1021]
gi|307301166|ref|ZP_07580928.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
gi|307321067|ref|ZP_07600472.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
gi|15073196|emb|CAC41704.1| Putative regulator of nucleoside diphosphate kinase [Sinorhizobium
meliloti 1021]
gi|306893239|gb|EFN24020.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
gi|306903622|gb|EFN34209.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
Length = 135
Score = 40.4 bits (93), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
A + ++ E ++EL+ RA + + D + G+TV+ + ++G K ++V
Sbjct: 29 SALDRVPDVAEALLSELD----RARIAAPGKLPKDSVQMGSTVAF-DADNGFAKEVRLVY 83
Query: 110 DQEADVQSGLVSISSPIARALIGKELG 136
EAD+++G +S+ +PI ALIG +G
Sbjct: 84 PGEADIEAGKISVLTPIGAALIGLSVG 110
>gi|229593308|ref|YP_002875427.1| nucleoside diphosphate kinase regulator [Pseudomonas fluorescens
SBW25]
gi|229365174|emb|CAY53437.1| regulator of nucleoside diphosphate kinase [Pseudomonas fluorescens
SBW25]
Length = 136
Score = 40.0 bits (92), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 66 LENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L++ + RAE V+ + + ++V E+ SG + +V ++A+ G +SI +
Sbjct: 33 LQHELDRAEEVVGHDEVPATVVTMNSSVHCREQGSGKDYHLTLVYPKDANADEGKISILA 92
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155
P+ AL+G ++G I APGG+ E+L V
Sbjct: 93 PVGSALLGLKVGQHIDWPAPGGKTLKLELLSV 124
>gi|114332047|ref|YP_748269.1| GreA/GreB family elongation factor [Nitrosomonas eutropha C91]
gi|114309061|gb|ABI60304.1| GreA/GreB family elongation factor [Nitrosomonas eutropha C91]
Length = 137
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
Q++ GR +LE + RA+V+D + + +TV ++S ++ +V ++ D
Sbjct: 26 QSVFPGR-DDLEAELARADVVDPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPKDVDT 84
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGG 146
+SI +P+ AL+G GD I PGG
Sbjct: 85 SGEKISILAPVGSALLGLSQGDEIEWPKPGG 115
>gi|121998926|ref|YP_001003713.1| GreA/GreB family elongation factor [Halorhodospira halophila SL1]
gi|121590331|gb|ABM62911.1| GreA/GreB family elongation factor [Halorhodospira halophila SL1]
Length = 137
Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 44/82 (53%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN + RAE+++ + + + +TV + + ++ + +V ++ D G +SI +
Sbjct: 34 DLENELARAEIVEPNEVPPGVVTMNSTVRFRVEATEEEFSLTLVYPKDVDSSGGTLSIFA 93
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ AL+G G+ I PGG
Sbjct: 94 PVGSALLGLSQGEEIEWPRPGG 115
>gi|117920161|ref|YP_869353.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3]
gi|117612493|gb|ABK47947.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3]
Length = 135
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
N GR A LE + RA+++ + M G+ + + V +S D ++V ++A
Sbjct: 26 NAFPGRAA-LEAELDRADIVPAAQMPGNVVTMNSEVRFSVSSSQDTFCLRLVYPKDA-AG 83
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146
G +SI +P+ AL+G GD I PGG
Sbjct: 84 EGTISILAPVGSALLGLSQGDEIEWPGPGG 113
>gi|119387447|ref|YP_918481.1| nucleoside diphosphate kinase regulator [Paracoccus denitrificans
PD1222]
gi|119378022|gb|ABL72785.1| GreA/GreB family elongation factor [Paracoccus denitrificans
PD1222]
Length = 137
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 55 LQNLNEGRMAELENI-------ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107
L+ L E MA + + RA V+ + M D G+ V+ ++ +G ++ +
Sbjct: 19 LERLAEAAMARNPELADRLLAELARARVLPPARMPADVAGIGSAVTFRDETTGREQTVVL 78
Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
V ++AD+ + S+ +PI ALIG G + + GE
Sbjct: 79 VWPEDADIAAARASVLTPIGVALIGLRAGARFTWDTRAGE 118
>gi|320352605|ref|YP_004193944.1| GreA/GreB family elongation factor [Desulfobulbus propionicus DSM
2032]
gi|320121107|gb|ADW16653.1| GreA/GreB family elongation factor [Desulfobulbus propionicus DSM
2032]
Length = 137
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+L +++ V+ M + + + V L + + G+ +V +E D Q VSI S
Sbjct: 36 KLHYDMSQGHVVSAGEMPSNVVTTHSWVVLCDLSDGEVFGLTLVFPEEVDSQGNRVSILS 95
Query: 125 PIARALIGKELGDIISVNAPGG 146
I ALIG++ GD I+ + P G
Sbjct: 96 SIGAALIGRQKGDTIAYSTPSG 117
>gi|293606854|ref|ZP_06689202.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
gi|292814706|gb|EFF73839.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
Length = 140
Score = 39.7 bits (91), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 8/130 (6%)
Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAF 88
++I A+ AR G ++ A L+ + + ++ A +I I ++ D I
Sbjct: 8 KLITALDHARLLGMITRPASAA------TLSRDAIDAAQELLDSAPIIPIEEVTPDIITM 61
Query: 89 GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG-GE 147
+ V L+ + GD+ + +A++ G VS+ SP+ +LIG G +++ AP E
Sbjct: 62 RSRVRLL-NDKGDEMVVTLCYPADANLAQGQVSVMSPLGLSLIGSRTGQLVTWTAPNQTE 120
Query: 148 KTYEILQVLW 157
+ I ++L+
Sbjct: 121 HSASIEEILY 130
>gi|317494056|ref|ZP_07952472.1| prokaryotic transcription elongation factor [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316917829|gb|EFV39172.1| prokaryotic transcription elongation factor [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 136
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L N + RAE++ M D + + V + +S ++ +V + +S+ +P
Sbjct: 34 LNNELDRAEMLSPENMPADVVTMNSRVKFRDLSSKEEHVRTLVYPASLKDSAAELSVMAP 93
Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
I AL+G +GD I P G+ T+ E+L++ +
Sbjct: 94 IGAALLGLRVGDAIQWELPNGQTTHIEVLELQY 126
>gi|312963811|ref|ZP_07778282.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
gi|311281846|gb|EFQ60456.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
Length = 136
Score = 39.7 bits (91), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 9/103 (8%)
Query: 62 RMAELENIIT-------RAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
RM E + +T RAE V+ + + ++V E+ SG + +V ++A
Sbjct: 22 RMGETQPGVTALQAELDRAEAVVGHDEVPATVVTMNSSVHCREQGSGKDYHLTLVYPKDA 81
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155
+ G +SI +P+ AL+G ++G I APGG+ E+L V
Sbjct: 82 NADEGKISILAPVGSALLGLQVGQHIDWPAPGGKTLKLELLSV 124
>gi|253997382|ref|YP_003049446.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8]
gi|253984061|gb|ACT48919.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8]
Length = 125
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 44/78 (56%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
++RA V+ + D + + V ++++SG + ++V + AD++ G +S+ SP+ A
Sbjct: 30 LSRAIVVPADQVPADVVRINSRVIYLDESSGLSREVELVFPEGADLKFGKISVLSPVGSA 89
Query: 130 LIGKELGDIISVNAPGGE 147
L+G + G +I P G+
Sbjct: 90 LLGLKEGQVIDWPFPHGQ 107
>gi|254670249|emb|CBA05481.1| Transcription elongation factor [Neisseria meningitidis alpha153]
Length = 40
Score = 39.7 bits (91), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYG 41
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++G
Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHG 40
>gi|299065804|emb|CBJ36982.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
CMR15]
Length = 138
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++++I RA V+ + D + + V V +G + + +V EA++ + +S+ SP
Sbjct: 37 VDDLIARANVVPGDRIPADVVTMNSVVR-VHAGAGTAQAWTLVYPDEANLAAARLSVLSP 95
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ AL+G +GD + AP G
Sbjct: 96 MGAALLGGRVGDEVHYAAPDGST 118
>gi|218549803|ref|YP_002383594.1| nucleoside diphosphate kinase regulator [Escherichia fergusonii
ATCC 35469]
gi|218357344|emb|CAQ89981.1| regulator of nucleoside diphosphate kinase [Escherichia fergusonii
ATCC 35469]
gi|324114743|gb|EGC08711.1| hypothetical protein ERIG_00737 [Escherichia fergusonii B253]
gi|325498198|gb|EGC96057.1| nucleoside diphosphate kinase regulator [Escherichia fergusonii
ECD227]
Length = 136
Score = 39.3 bits (90), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA++ TM D +
Sbjct: 3 RPTIIINDLDAERIDMLLEQPAYAGLPIADALN----AELD----RAQMCSPETMPNDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 TSTHLEVLEL 124
>gi|77461715|ref|YP_351222.1| nucleoside diphosphate kinase regulator [Pseudomonas fluorescens
Pf0-1]
gi|77385718|gb|ABA77231.1| regulator of nucleoside diphosphate kinase [Pseudomonas fluorescens
Pf0-1]
Length = 136
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
+ D + + V E++SG + +V + A+ G VSI +P+ AL+G ++G I
Sbjct: 49 VPADVVTMNSRVHCREESSGKDYHLTLVYPKHANADEGKVSILAPVGSALLGLKVGQHID 108
Query: 141 VNAPGGE 147
APGG+
Sbjct: 109 WPAPGGK 115
>gi|125975505|ref|YP_001039415.1| GreA/GreB family elongation factor [Clostridium thermocellum ATCC
27405]
gi|256004207|ref|ZP_05429190.1| GreA/GreB family elongation factor [Clostridium thermocellum DSM
2360]
gi|281419462|ref|ZP_06250476.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20]
gi|125715730|gb|ABN54222.1| GreA/GreB family elongation factor [Clostridium thermocellum ATCC
27405]
gi|255991797|gb|EEU01896.1| GreA/GreB family elongation factor [Clostridium thermocellum DSM
2360]
gi|281406868|gb|EFB37132.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20]
gi|316939625|gb|ADU73659.1| transcription elongation factor GreA/GreB domain-containing protein
[Clostridium thermocellum DSM 1313]
Length = 160
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 34 ISEARAYGDLSENAEY-QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATV 92
+SE D+ N Y + KE N E L+ I + + + + F
Sbjct: 18 VSEIEKERDMLLNEHYAEETKESINFQEFFKNYLDRINSYLNTVRVDKNGSEACPFVIIN 77
Query: 93 SLVEKNSGD---KKNYQIV--GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
S+VE + K Y+IV +E D S SP+ RAL+ K + D +SV P G
Sbjct: 78 SIVEVFDCEEEEKCKYRIVLPFSKEYDTSIDCASCLSPLGRALLFKNVNDNVSVQIPTGM 137
Query: 148 KTYEILQV 155
Y IL +
Sbjct: 138 LHYTILDI 145
>gi|325104691|ref|YP_004274345.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145]
gi|324973539|gb|ADY52523.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145]
Length = 135
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AELE +AEV+ T+ ++ + + E+ SG + + +V ++A + +SI
Sbjct: 43 AELE----KAEVLTEKTLPEGFVSVNTKLKIEEEQSGKELEFILVEPKKAKQKLNKLSIL 98
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SPI AL G + GD +S P G + Y I +V
Sbjct: 99 SPIGVALAGYKSGDKVSWEMPDGIRNYFIKEV 130
>gi|163844766|ref|YP_001622421.1| nucleoside diphosphate kinase regulator [Brucella suis ATCC 23445]
gi|163675489|gb|ABY39599.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 169
Score = 39.3 bits (90), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
A++ + + E MAEL+ RA+V+ + + + G+TV N G ++ +V
Sbjct: 27 NASERFEEIAEELMAELD----RAKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 81
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
EAD+ +S +PI ALIG G IS A G++ +L+V+
Sbjct: 82 PGEADIAKNRISTLTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 129
>gi|311280477|ref|YP_003942708.1| GreA/GreB family elongation factor [Enterobacter cloacae SCF1]
gi|308749672|gb|ADO49424.1| GreA/GreB family elongation factor [Enterobacter cloacae SCF1]
Length = 136
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA++ +M D ++ + V + +G+++ +V + S +S+ +P
Sbjct: 34 LNDELDRAQMCAPESMPHDVVSMNSKVRFRDLTTGEERVRTLVFPTQMTDSSTQLSVLAP 93
Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
+ AL+G +G I P G T+ E+L++L+
Sbjct: 94 VGAALLGLRVGSTIHWELPNGTATHLEVLELLY 126
>gi|255535437|ref|YP_003095808.1| transcription elongation factor [Flavobacteriaceae bacterium
3519-10]
gi|255341633|gb|ACU07746.1| transcription elongation factor [Flavobacteriaceae bacterium
3519-10]
Length = 170
Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 61/124 (49%), Gaps = 17/124 (13%)
Query: 24 QEERPRIIKAISEARAYGDL-SENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
+++ RI K+I +A+ + +E+AE + L+ L+ ++ E +I
Sbjct: 42 KQDSTRIHKSIMDAKKNNSIKAEDAE----RLLRELHSAKIVESADI------------P 85
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
D + + V + +N+ ++IV ++A+++ +SI SP+A ALIG + D I
Sbjct: 86 ADVVTMNSVVKIHFENNKTVTEFKIVYPEQANIKDRKISIFSPVAAALIGYSVNDEIDWI 145
Query: 143 APGG 146
P G
Sbjct: 146 VPSG 149
>gi|58427865|gb|AAW76902.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
oryzae KACC10331]
Length = 252
Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA V+ + GD + + + ++ G + V EADVQ G + + +P
Sbjct: 150 LSDELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAP 209
Query: 126 IARALIGKELGDIISVNAPGGE 147
+ AL G +G I P G
Sbjct: 210 VGSALGGLSVGQRIDWRTPDGR 231
>gi|118580491|ref|YP_901741.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM
2379]
gi|118503201|gb|ABK99683.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM
2379]
Length = 172
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 86 IAFGATVSLVEKNSGDKKNYQI--------VGDQEADVQSGLVSISSPIARALIGKELGD 137
I A V+L + G KN I V DQ +V +++ +SP+ R+LIG++ GD
Sbjct: 96 IRLTALVTLRAGDDGTAKNVFIGPREGGLKVMDQGEEVM--VITPASPLGRSLIGRQQGD 153
Query: 138 IISVNAPGGEKTYEILQV 155
I + G + YEI+QV
Sbjct: 154 CIETGSGAGIREYEIVQV 171
>gi|13473408|ref|NP_104975.1| nucleoside diphosphate kinase regulator [Mesorhizobium loti
MAFF303099]
gi|14024157|dbj|BAB50761.1| nucleoside diphosphate kinase regulator [Mesorhizobium loti
MAFF303099]
Length = 140
Score = 38.9 bits (89), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
RA V D + M D + G+ V+ V G + +V EAD+ +S+ +P+ ALI
Sbjct: 47 RAVVTDAAAMPADVVRMGSAVT-VRGEGGATQRIMLVYPGEADIAENRISVLTPMGTALI 105
Query: 132 GKELGDIISVNAPGGEK 148
G +G + ++ GG +
Sbjct: 106 GASIGQAVCWSSRGGRE 122
>gi|122879281|ref|YP_202287.6| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
oryzae KACC10331]
Length = 143
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA V+ + GD + + + ++ G + V EADVQ G + + +P
Sbjct: 41 LSDELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAP 100
Query: 126 IARALIGKELGDIISVNAPGG 146
+ AL G +G I P G
Sbjct: 101 VGSALGGLSVGQRIDWRTPDG 121
>gi|84625107|ref|YP_452479.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|84369047|dbj|BAE70205.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
oryzae MAFF 311018]
Length = 143
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA V+ + GD + + + ++ G + V EADVQ G + + +P
Sbjct: 41 LSDELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAP 100
Query: 126 IARALIGKELGDIISVNAPGG 146
+ AL G +G I P G
Sbjct: 101 VGSALGGLSVGQRIDWRTPDG 121
>gi|229817908|ref|ZP_04448190.1| hypothetical protein BIFANG_03194 [Bifidobacterium angulatum DSM
20098]
gi|229784512|gb|EEP20626.1| hypothetical protein BIFANG_03194 [Bifidobacterium angulatum DSM
20098]
Length = 44
Score = 38.9 bits (89), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYG 41
+T + +DK+Q+EL+WR+ E R II +S ARA G
Sbjct: 10 LTQEAYDKMQEELKWREGEYRDEIIAKVSAARAEG 44
>gi|330964215|gb|EGH64475.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 135
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 56 QNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
Q+ N + L+ + RAE V+ + + + V E+ SG + ++V Q+A
Sbjct: 24 QDENTPGLQALQAELDRAEHVVGHDEVPAGVVTMNSRVHCCEEVSGKDYHLKLVYPQDAG 83
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ G VS+ +P+ ALIG ++G I APGG+
Sbjct: 84 AE-GTVSVLAPMGSALIGLQVGQHIDWPAPGGK 115
>gi|94499055|ref|ZP_01305593.1| putative regulator of nucleoside diphosphate kinase [Oceanobacter
sp. RED65]
gi|94428687|gb|EAT13659.1| putative regulator of nucleoside diphosphate kinase [Oceanobacter
sp. RED65]
Length = 135
Score = 38.9 bits (89), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 55 LQNLNEGRM---AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
L+ L +G + +ELE+ + RA +++ + + + ++ + V ++ + +V +
Sbjct: 19 LETLPKGHVMGGSELEDELDRANLVEPTEIPPNIVSMNSKVKFEVVSTNQEFELTLVYPK 78
Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ D + +SI +P+ AL+G +GD I ++PGG
Sbjct: 79 DLDQEGKTISILAPVGSALLGLSIGDSIEWSSPGG 113
>gi|226941111|ref|YP_002796185.1| Transcription elongation factor [Laribacter hongkongensis HLHK9]
gi|226716038|gb|ACO75176.1| Transcription elongation factor [Laribacter hongkongensis HLHK9]
Length = 135
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LE + RA+V+D M + + V + +G + +Q+ ++ +S+ +
Sbjct: 33 QLETELARADVVDPQDMPAGVVTMNSRVRFADA-AGATREFQLCYPKDMTGSPDQLSVLA 91
Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
P+ AL+G G I P GG +L V+W
Sbjct: 92 PVGAALLGLSAGQAIDWPLPDGGHTRLTVLDVVW 125
>gi|120598560|ref|YP_963134.1| GreA/GreB family elongation factor [Shewanella sp. W3-18-1]
gi|146293361|ref|YP_001183785.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32]
gi|120558653|gb|ABM24580.1| GreA/GreB family elongation factor [Shewanella sp. W3-18-1]
gi|145565051|gb|ABP75986.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32]
Length = 135
Score = 38.9 bits (89), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
N G+ A LE + RAE++ + M + + + V +S D ++V ++A+ +
Sbjct: 26 NAFPGKTA-LEAELDRAEIVPATEMPDNVVTMNSLVKFSVSSSNDTFCLRLVYPKDANGE 84
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146
G +SI +P+ AL+G GD I PGG
Sbjct: 85 -GTISILAPVGSALLGLSQGDDIEWPGPGG 113
>gi|18034019|gb|AAL57322.1|AF395125_3 GreA [Borrelia hermsii]
Length = 81
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+ FG V+++ K++G ++ Y I G E++ G++S SP L+ + GD
Sbjct: 6 VGFGTKVTMINKDTGREEFYLIFGPWESNPDEGIISYKSPFGENLLDAKEGD 57
>gi|326318708|ref|YP_004236380.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323375544|gb|ADX47813.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 139
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSL----VEKNSGDKKNYQIVGDQEADVQSGL 119
A L +++ A+V + D + + V L + G ++ + Q+AD +G
Sbjct: 31 ASLADLLATADVTGSRAVDADVVTMNSRVELEGSGTDGADGARQVLTLCYPQDADAAAGR 90
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKT 149
VS+ SP+ +L+G +GD+ + P GE
Sbjct: 91 VSVLSPVGCSLLGLRVGDVAAWRTPQGEDC 120
>gi|51892882|ref|YP_075573.1| putative transcription elongation factor [Symbiobacterium
thermophilum IAM 14863]
gi|51856571|dbj|BAD40729.1| putative transcription elongation factor [Symbiobacterium
thermophilum IAM 14863]
Length = 154
Score = 38.9 bits (89), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%)
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
D + V+LV++ G ++ Y +V +E D G +S SP+ AL+ K + D + ++A
Sbjct: 76 DVVFMDVPVTLVDETDGTEEVYTVVLPEEGDPAKGHISCLSPLGLALLLKRVNDRVVIDA 135
Query: 144 PGGEKTYEILQV 155
PGG TY I V
Sbjct: 136 PGGRFTYRIAAV 147
>gi|17547355|ref|NP_520757.1| regulator of nucleoside diphosphate kinase transcription regulator
protein [Ralstonia solanacearum GMI1000]
gi|17429658|emb|CAD16343.1| putative regulator of nucleoside diphosphate kinase transcription
regulator protein [Ralstonia solanacearum GMI1000]
Length = 134
Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++++I RA V+ + D + + V V +G + + +V EA++ + +S+ SP
Sbjct: 33 VDDLIVRANVVPGDRIPADVVTMNSVVR-VHAGAGTAQEWTLVYPDEANLAAARLSVLSP 91
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ AL+G GD + AP G
Sbjct: 92 MGAALLGGRAGDEVHYAAPDGST 114
>gi|150398653|ref|YP_001329120.1| nucleoside diphosphate kinase regulator [Sinorhizobium medicae
WSM419]
gi|150030168|gb|ABR62285.1| GreA/GreB family elongation factor [Sinorhizobium medicae WSM419]
Length = 135
Score = 38.5 bits (88), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
A + + E + EL+ RA + + D + G+TV+ ++G K ++V
Sbjct: 29 SALDRIPEVAEALLLELD----RARIAAPGKLPKDSVQMGSTVAF-HADNGFAKEVRLVY 83
Query: 110 DQEADVQSGLVSISSPIARALIGKELG 136
EAD+++G +S+ +PI ALIG +G
Sbjct: 84 PGEADIEAGKISVLTPIGAALIGLSVG 110
>gi|56675424|emb|CAA83788.2| transcription elongation factor [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
Length = 44
Score = 38.5 bits (88), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQ 56
RP++I+ + EAR GDLSENA+Y AA+ Q
Sbjct: 8 RPKVIEELVEARNQGDLSENADYDAARNRQ 37
>gi|24373499|ref|NP_717542.1| regulator of nucleoside diphosphate kinase [Shewanella oneidensis
MR-1]
gi|24347802|gb|AAN54986.1|AE015637_2 regulator of nucleoside diphosphate kinase [Shewanella oneidensis
MR-1]
Length = 135
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
N GR A LE + RA+++ + M + + + V +S D ++V ++A
Sbjct: 26 NAFPGR-AALEAELDRADIVPAAQMPANVVTMNSEVKFRVSSSNDTFCLRLVYPKDA-TG 83
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146
G +SI +P+ AL+G GD I PGG
Sbjct: 84 EGTISILAPVGSALLGLSQGDQIEWPGPGG 113
>gi|82702067|ref|YP_411633.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC
25196]
gi|82410132|gb|ABB74241.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC
25196]
Length = 137
Score = 38.5 bits (88), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL+ + RAE+++ + + +TV +SG +V ++ D +S+
Sbjct: 33 AELQAELERAEIVEPEQIPPTVVTMNSTVRFSIDSSGQDFRLTLVYPKDVDGSGNKISVL 92
Query: 124 SPIARALIGKELGDIISVNAPGG 146
+P+ AL+G GD I PGG
Sbjct: 93 APVGSALLGLSTGDEIEWPRPGG 115
>gi|188575425|ref|YP_001912354.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|188519877|gb|ACD57822.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
oryzae PXO99A]
Length = 215
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RA V+ + GD + + + ++ G + V EADVQ G + + +P
Sbjct: 113 LSDELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAP 172
Query: 126 IARALIGKELGDIISVNAPGGE 147
+ AL G +G I P G
Sbjct: 173 VGSALGGLSVGQRIDWRTPDGR 194
>gi|62179216|ref|YP_215633.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224582450|ref|YP_002636248.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|62126849|gb|AAX64552.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|224466977|gb|ACN44807.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|322713681|gb|EFZ05252.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 136
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALN----AELD----RAQMCSPQEMPNDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V S +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 TSTHLEVLEL 124
>gi|148558514|ref|YP_001257600.1| nucleoside diphosphate kinase regulator [Brucella ovis ATCC 25840]
gi|148369799|gb|ABQ62671.1| putative transcriptional regulator Rnk [Brucella ovis ATCC 25840]
Length = 146
Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
A++ + + E MAEL+ A+V+ + + + G+TV N G ++ +V
Sbjct: 4 NASERFEEIAEELMAELDC----AKVVTAKRIPENVVQMGSTVEF-RANDGHERRVTLVY 58
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
EAD+ +SI +PI ALIG G IS A G++ +L+V+
Sbjct: 59 PGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKVM 106
>gi|304310570|ref|YP_003810168.1| transcription elongation factor GreA/GreB [gamma proteobacterium
HdN1]
gi|301796303|emb|CBL44511.1| transcription elongation factor GreA/GreB [gamma proteobacterium
HdN1]
Length = 137
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELE + RA V++ + + + V ++S D+ +V ++ D +SI S
Sbjct: 34 ELEAELDRANVVEPHEVPPTVVTMNSKVKFNVESSSDEFELTLVYPKDMDASGKTISILS 93
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ AL+G GD I PGG
Sbjct: 94 PVGSALLGLSQGDEIEWPKPGG 115
>gi|283834084|ref|ZP_06353825.1| regulator of nucleoside diphosphate kinase [Citrobacter youngae
ATCC 29220]
gi|291070230|gb|EFE08339.1| regulator of nucleoside diphosphate kinase [Citrobacter youngae
ATCC 29220]
Length = 136
Score = 38.5 bits (88), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E + LN AEL+ RA++ TM D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAFAGLPIADALN----AELD----RAQMCSPETMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V S +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKTY 150
T+
Sbjct: 115 TSTH 118
>gi|162450982|ref|YP_001613349.1| regulator of nucleoside diphosphate kinase [Sorangium cellulosum
'So ce 56']
gi|161161564|emb|CAN92869.1| regulator of nucleoside diphosphate kinase [Sorangium cellulosum
'So ce 56']
Length = 140
Score = 38.1 bits (87), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 47/92 (51%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE I RA+V+ + + + + + V LV+ ++ ++ +V ADV+SG +S+ +P
Sbjct: 39 LEIEIERADVVKPADIPPNVVTMNSRVELVDLDTEERLCVTVVFPGNADVKSGRISVLAP 98
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ AL+G D + P + I ++ +
Sbjct: 99 MGLALLGCREADEVEWPTPSRTRRLRIERIAY 130
>gi|298292903|ref|YP_003694842.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
gi|296929414|gb|ADH90223.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
Length = 142
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 40 YGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS 99
YG L++ A A ++ E E+E RA+V+ +T+ + G+TV +
Sbjct: 20 YGRLTKLAT-AALDRFPDVAEELQIEME----RAQVLSTATIPEGVVQMGSTVEY-HSDV 73
Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS-VNAPGGEKTYEILQV 155
++ +V EAD+ G VSI +PI ALIG G I V+ G E +L+V
Sbjct: 74 EQRRRITLVYPGEADIAEGRVSILTPIGAALIGLSAGQSIRWVSRDGREHVLTVLKV 130
>gi|59711263|ref|YP_204039.1| transcription elongation factor [Vibrio fischeri ES114]
gi|59479364|gb|AAW85151.1| transcription elongation factor [Vibrio fischeri ES114]
Length = 161
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 89 GATVSLVEKNSGDKKNYQIVGDQ-------EADVQSGLVSISSPIARALIGKELGDIISV 141
GA V+LV N D ++ +G D+ L++ S+P+ +A+IG+++GD +
Sbjct: 89 GALVTLV--NQDDVESTFFIGPSAGGVKVAHQDLVFSLITPSAPLGKAMIGQQVGDEFEL 146
Query: 142 NAPGGEKTYEILQV 155
N G ++ YEI+ V
Sbjct: 147 NLAGKKQQYEIIDV 160
>gi|114049385|ref|YP_739935.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
gi|113890827|gb|ABI44878.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
Length = 56
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ 50
+T +G+ + +EL++ +E RP+I + EA A GD SENA+Y+
Sbjct: 6 ITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYR 49
>gi|197334352|ref|YP_002155417.1| transcription elongation factor [Vibrio fischeri MJ11]
gi|197315842|gb|ACH65289.1| transcription elongation factor [Vibrio fischeri MJ11]
Length = 161
Score = 38.1 bits (87), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
D+ L++ S+P+ +A+IG++LGD +N G ++ YEI+ V
Sbjct: 119 DLVFSLITPSAPLGKAIIGQQLGDEFELNLAGKKQQYEIIDV 160
>gi|114563174|ref|YP_750687.1| GreA/GreB family elongation factor [Shewanella frigidimarina NCIMB
400]
gi|114334467|gb|ABI71849.1| GreA/GreB family elongation factor [Shewanella frigidimarina NCIMB
400]
Length = 137
Score = 38.1 bits (87), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++ELE + RA ++D + + +TV + S ++ +V ++ D++ +SI
Sbjct: 32 ISELEEELARAIIVDPKEIPTTIVTMNSTVKFTVEASREEFLMTLVYPKDLDLKGDKISI 91
Query: 123 SSPIARALIGKELGDIISVNAPGG 146
+P+ AL+G GD I PGG
Sbjct: 92 LAPVGSALLGLAQGDQIEWPKPGG 115
>gi|241765275|ref|ZP_04763255.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN]
gi|241365031|gb|EER59928.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN]
Length = 137
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL+ + RA+V+ + + + +TV +G + +V ++ D + +SI
Sbjct: 33 AELQAELDRADVVAPEEIPPNVVTMNSTVQFTMLETGKEFCLTLVYPRDMDGSADRISIL 92
Query: 124 SPIARALIGKELGDIISVNAPGGE 147
+P+ AL+G +GD ++ PGG+
Sbjct: 93 APVGGALLGLSVGDELAWPGPGGK 116
>gi|258516280|ref|YP_003192502.1| GreA/GreB family elongation factor [Desulfotomaculum acetoxidans
DSM 771]
gi|257779985|gb|ACV63879.1| GreA/GreB family elongation factor [Desulfotomaculum acetoxidans
DSM 771]
Length = 135
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 53 KELQNLNEGRMA------ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106
K L + EG A +LEN + RA ++D + D I + +L++ N D +
Sbjct: 17 KILDKMPEGNQASDKSVKKLENELYRAIIVDSQQVPRDVITMNSK-ALLQLNDEDIE-VS 74
Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+V ++AD+ + +SI SPI A++G + G+ I P G I ++L+
Sbjct: 75 LVYPEDADLGAMKLSIFSPIGTAILGYKEGNTIEWEVPSGTSKIHIKKILY 125
>gi|288962542|ref|YP_003452837.1| regulator of nucleoside diphosphate kinase [Azospirillum sp. B510]
gi|288914808|dbj|BAI76293.1| regulator of nucleoside diphosphate kinase [Azospirillum sp. B510]
Length = 166
Score = 38.1 bits (87), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 62 RMAELENIIT----RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
R+ E+ +T RA VI+ ++ + GA V+ ++ +G ++ +V ++AD+ +
Sbjct: 56 RLPEVYAYLTVELERAAVIEEGELATGVVTMGARVAFRDEVTGQERTVTLVYPRDADLAA 115
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
VS+ +PI ALIG G I+ GE +IL VL +
Sbjct: 116 CRVSVLTPIGAALIGVAEGQSITWYTREGEA--KILTVLAV 154
>gi|161504212|ref|YP_001571324.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160865559|gb|ABX22182.1| hypothetical protein SARI_02319 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 136
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALN----AELD----RAQMCSPQEMPSDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V S +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 ASTHLEVLEL 124
>gi|16759576|ref|NP_455193.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16763993|ref|NP_459608.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29142651|ref|NP_805993.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56414248|ref|YP_151323.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|161615176|ref|YP_001589141.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167550854|ref|ZP_02344610.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167990616|ref|ZP_02571716.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168231621|ref|ZP_02656679.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168236603|ref|ZP_02661661.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168240457|ref|ZP_02665389.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168260874|ref|ZP_02682847.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168465785|ref|ZP_02699667.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|194450939|ref|YP_002044647.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194471151|ref|ZP_03077135.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194735601|ref|YP_002113733.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197250140|ref|YP_002145589.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197263195|ref|ZP_03163269.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197363171|ref|YP_002142808.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198245388|ref|YP_002214607.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200390133|ref|ZP_03216744.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204930449|ref|ZP_03221379.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205351905|ref|YP_002225706.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207856082|ref|YP_002242733.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213023434|ref|ZP_03337881.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
gi|213051866|ref|ZP_03344744.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213417566|ref|ZP_03350708.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213425121|ref|ZP_03357871.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213613069|ref|ZP_03370895.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213647691|ref|ZP_03377744.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213850322|ref|ZP_03381220.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|238911567|ref|ZP_04655404.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289829888|ref|ZP_06547376.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25511993|pir||AC0578 regulator of nucleoside diphosphate kinase STY0664 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16419127|gb|AAL19567.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|16501868|emb|CAD05093.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29138282|gb|AAO69853.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56128505|gb|AAV78011.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|161364540|gb|ABX68308.1| hypothetical protein SPAB_02944 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194409243|gb|ACF69462.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194457515|gb|EDX46354.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194711103|gb|ACF90324.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195631988|gb|EDX50508.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197094648|emb|CAR60171.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|197213843|gb|ACH51240.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197241450|gb|EDY24070.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197290337|gb|EDY29693.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197939904|gb|ACH77237.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199602578|gb|EDZ01124.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204320383|gb|EDZ05586.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205271686|emb|CAR36516.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|205324214|gb|EDZ12053.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205330837|gb|EDZ17601.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205334065|gb|EDZ20829.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205339721|gb|EDZ26485.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205349901|gb|EDZ36532.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206707885|emb|CAR32173.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|261245889|emb|CBG23690.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267992344|gb|ACY87229.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157217|emb|CBW16704.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312911647|dbj|BAJ35621.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320084884|emb|CBY94674.1| Transcription elongation factor greA Transcript cleavage factor
greA [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|321226194|gb|EFX51245.1| Regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322613251|gb|EFY10194.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322621321|gb|EFY18178.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322623740|gb|EFY20578.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629012|gb|EFY25791.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322631734|gb|EFY28488.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322637530|gb|EFY34232.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641870|gb|EFY38500.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646715|gb|EFY43221.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322651415|gb|EFY47795.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322653134|gb|EFY49468.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658854|gb|EFY55109.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322664876|gb|EFY61069.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668878|gb|EFY65030.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322670616|gb|EFY66749.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675357|gb|EFY71433.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682172|gb|EFY78197.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322684997|gb|EFY80994.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323128933|gb|ADX16363.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323193943|gb|EFZ79145.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323197965|gb|EFZ83087.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323201988|gb|EFZ87048.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323207121|gb|EFZ92074.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211668|gb|EFZ96502.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323214352|gb|EFZ99103.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221503|gb|EGA05917.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323225547|gb|EGA09777.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231105|gb|EGA15221.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323234063|gb|EGA18152.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323238242|gb|EGA22300.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242524|gb|EGA26548.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323248499|gb|EGA32433.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251285|gb|EGA35157.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323259213|gb|EGA42856.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323261516|gb|EGA45095.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323264803|gb|EGA48304.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323272360|gb|EGA55767.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326622360|gb|EGE28705.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326626944|gb|EGE33287.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
gi|332987561|gb|AEF06544.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 136
Score = 38.1 bits (87), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALN----AELD----RAQMCSPQEMPNDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V S +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 ASTHLEVLEL 124
>gi|113869543|ref|YP_728032.1| transcription elongation factor GreA [Ralstonia eutropha H16]
gi|113528319|emb|CAJ94664.1| transcription elongation factor GreA [Ralstonia eutropha H16]
Length = 139
Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L++++ RA ++ + D + + +N+ +V AD +G +S+ SP
Sbjct: 37 LDSLLARATIVAPEEIPTDVVTMNTRLVCNLPGEQAPRNWTLVYPDAADFDAGRLSVLSP 96
Query: 126 IARALIGKELGDIISVNAPGGEK 148
+ +AL+G G +S P G +
Sbjct: 97 VGQALLGARAGQTVSYRLPDGRE 119
>gi|213584821|ref|ZP_03366647.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 131
Score = 38.1 bits (87), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALN----AELD----RAQMCSPQEMPNDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V S +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 ASTHLEVLEL 124
>gi|27367044|ref|NP_762571.1| nucleoside diphosphate kinase regulator [Vibrio vulnificus CMCP6]
gi|320158922|ref|YP_004191300.1| regulator of nucleoside diphosphate kinase [Vibrio vulnificus
MO6-24/O]
gi|27358612|gb|AAO07561.1| Regulator of nucleoside diphosphate kinase [Vibrio vulnificus
CMCP6]
gi|319934234|gb|ADV89097.1| regulator of nucleoside diphosphate kinase [Vibrio vulnificus
MO6-24/O]
Length = 135
Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV-GDQEADVQSGLVS 121
+ +LEN + RA V+ M + + +TV S +V DQ + VS
Sbjct: 31 LEKLENELDRANVLAPQQMPDNIVTMNSTVRFTFVGSDKVMEKTLVYPDQVRNPDD--VS 88
Query: 122 ISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
I +P+ AL+G +G ++ PGG EKT EIL+V +
Sbjct: 89 IFAPVGSALLGLSVGQQLTWPMPGGAEKTIEILEVTY 125
>gi|168818764|ref|ZP_02830764.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205344225|gb|EDZ30989.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
Length = 136
Score = 37.7 bits (86), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIAYALN----AELD----RAQMCSPQEMPNDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V S +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 ASTHLEVLEL 124
>gi|330501242|ref|YP_004378111.1| nucleoside diphosphate kinase regulator [Pseudomonas mendocina
NK-01]
gi|328915528|gb|AEB56359.1| nucleoside diphosphate kinase regulator [Pseudomonas mendocina
NK-01]
Length = 135
Score = 37.7 bits (86), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 55 LQNLNE-GRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
L +L+E G AE L+ + RAEV+ + + + V E++SG + +V Q+
Sbjct: 21 LDSLDEFGPGAEALQAELDRAEVVGHDEVPAGVVTMNSRVHCREESSGKDYHLTLVYPQD 80
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148
A G VSI +P+ AL+G +G I PGG++
Sbjct: 81 AG-GDGKVSILAPVGSALLGLSVGQHIDWPVPGGKQ 115
>gi|188583383|ref|YP_001926828.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001]
gi|179346881|gb|ACB82293.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001]
Length = 137
Score = 37.7 bits (86), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + R +++ T GD G+ V + ++G ++ +V +AD+ G VSI +P
Sbjct: 41 LSDELDRVQIVRGGTAEGDFARMGSRVDFRDNSTGRMQSVTLVYPGDADIAQGKVSILTP 100
Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQV 155
I ALIG G I GE + +L+V
Sbjct: 101 IGAALIGLSKGQSIDWATRTGEIRRLTVLEV 131
>gi|166011342|ref|ZP_02232240.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Antiqua str. E1979001]
gi|167420627|ref|ZP_02312380.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|165989726|gb|EDR42027.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166961433|gb|EDR57454.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. MG05-1020]
Length = 150
Score = 37.7 bits (86), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAE++ + + D + + V ++ NS ++ +V + +S+ +P+ A
Sbjct: 52 LDRAEILPPNEIPADVVTMNSRVRFLDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 111
Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157
L+G + D IS PGG++T +L++L+
Sbjct: 112 LLGLHVNDEISWKLPGGDETRITVLELLY 140
>gi|328886579|emb|CCA59818.1| transcription elongation factor, putative [Streptomyces venezuelae
ATCC 10712]
Length = 155
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 7/152 (4%)
Query: 6 PVTSKGFDKIQQEL-RWRQQEERPRIIKAISEARAYGDLSENA-EYQAAKELQNLNEGRM 63
P+++ + +++EL R + E + GD ++ A E Q EL L+ R+
Sbjct: 7 PISAAAREALERELDELRTEREAVAVTLRDGGGDETGDRADQADELQRGTELTRLDR-RI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
EL + A V D + G+TV+ V G + QI G+ A + + +V+
Sbjct: 66 DELHGRLREAAVAGAPRT--DAVGVGSTVT-VRFEDGTETTVQI-GEVAAVLDATMVTAD 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ AL+G GD ++ P G T ++ +
Sbjct: 122 SPLGGALLGHRAGDTVTYVTPQGRTTAVVVSL 153
>gi|304412090|ref|ZP_07393700.1| transcription elongation factor GreA/GreB domain-containing
protein [Shewanella baltica OS183]
gi|307305985|ref|ZP_07585731.1| transcription elongation factor GreA/GreB domain protein
[Shewanella baltica BA175]
gi|304349640|gb|EFM14048.1| transcription elongation factor GreA/GreB domain-containing
protein [Shewanella baltica OS183]
gi|306911478|gb|EFN41904.1| transcription elongation factor GreA/GreB domain protein
[Shewanella baltica BA175]
Length = 49
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY 49
+T +G+ + +EL++ +E RP+I + EA A GD SENA++
Sbjct: 6 ITRQGWQTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADF 48
>gi|197104061|ref|YP_002129438.1| transcription elongation factor [Phenylobacterium zucineum HLK1]
gi|196477481|gb|ACG77009.1| transcription elongation factor [Phenylobacterium zucineum HLK1]
Length = 214
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 55 LQNL--NEGRMAEL-ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
L NL ++G AEL + RA V+ S + G+TV ++ + + ++V
Sbjct: 107 LLNLADHDGPGAELLARELDRAIVVREGEKSRPFVRLGSTVEYRDRLTEKVRTVELVPPD 166
Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
AD+ + +S+ SP+ AL+G +GD S AP G
Sbjct: 167 AADIDANRLSVLSPVGAALLGLSVGDTFSWTAPDG 201
>gi|49076904|gb|AAT49613.1| PA5274 [synthetic construct]
Length = 135
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 55 LQNLNE-GRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
L L+E G AE LE ++RA+V+ + + +TV E++SG K Y +
Sbjct: 20 LDGLDEFGPAAEALEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSG--KEYTLTLVYP 77
Query: 113 ADVQS-GLVSISSPIARALIGKELGDIISVNAPGGE 147
DV G VSI +P+ AL+G +G I AP G+
Sbjct: 78 EDVAGEGKVSILAPVGTALLGLTIGQTIDWPAPSGK 113
>gi|83644422|ref|YP_432857.1| transcription elongation factor [Hahella chejuensis KCTC 2396]
gi|83632465|gb|ABC28432.1| Transcription elongation factor [Hahella chejuensis KCTC 2396]
Length = 160
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEA------DVQSGLV-SISSPIARALIGKELG 136
D +A A V+L ++ +++ + VG + A D Q LV + SPI L+GK +G
Sbjct: 83 DEVAVFALVTLEAEDGSERRLF--VGPEAAGFKFLLDEQEVLVITRRSPIGMKLMGKMVG 140
Query: 137 DIISVNAPGGEKTYEILQV 155
D++++ A GEK +EI+++
Sbjct: 141 DVVALVAGNGEKEFEIVEI 159
>gi|22124088|ref|NP_667511.1| nucleoside diphosphate kinase regulator [Yersinia pestis KIM 10]
gi|45443579|ref|NP_995118.1| nucleoside diphosphate kinase regulator [Yersinia pestis biovar
Microtus str. 91001]
gi|51597830|ref|YP_072021.1| nucleoside diphosphate kinase regulator [Yersinia
pseudotuberculosis IP 32953]
gi|108809699|ref|YP_653615.1| nucleoside diphosphate kinase regulator [Yersinia pestis Antiqua]
gi|108813637|ref|YP_649404.1| nucleoside diphosphate kinase regulator [Yersinia pestis Nepal516]
gi|145597618|ref|YP_001161694.1| nucleoside diphosphate kinase regulator [Yersinia pestis Pestoides
F]
gi|153948732|ref|YP_001399422.1| nucleoside diphosphate kinase regulator [Yersinia
pseudotuberculosis IP 31758]
gi|153997370|ref|ZP_02022470.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
CA88-4125]
gi|162421792|ref|YP_001605709.1| nucleoside diphosphate kinase regulator [Yersinia pestis Angola]
gi|165928305|ref|ZP_02224137.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937429|ref|ZP_02225992.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. IP275]
gi|166212183|ref|ZP_02238218.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167400655|ref|ZP_02306164.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167426754|ref|ZP_02318507.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468355|ref|ZP_02333059.1| regulator of nucleoside diphosphate kinase [Yersinia pestis FV-1]
gi|170022744|ref|YP_001719249.1| nucleoside diphosphate kinase regulator [Yersinia
pseudotuberculosis YPIII]
gi|186897022|ref|YP_001874134.1| nucleoside diphosphate kinase regulator [Yersinia
pseudotuberculosis PB1/+]
gi|218930702|ref|YP_002348577.1| nucleoside diphosphate kinase regulator [Yersinia pestis CO92]
gi|229836848|ref|ZP_04457013.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
Pestoides A]
gi|229839254|ref|ZP_04459413.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229899819|ref|ZP_04514960.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229904131|ref|ZP_04519242.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
Nepal516]
gi|270488565|ref|ZP_06205639.1| regulator of nucleoside diphosphate kinase [Yersinia pestis KIM
D27]
gi|294505286|ref|YP_003569348.1| nucleoside diphosphate kinase regulator [Yersinia pestis Z176003]
gi|21956837|gb|AAM83762.1|AE013616_8 regulator of nucleoside diphosphate kinase [Yersinia pestis KIM 10]
gi|45438449|gb|AAS63995.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Microtus str. 91001]
gi|51591112|emb|CAH22776.1| regulator of nucleoside diphosphate kinase [Yersinia
pseudotuberculosis IP 32953]
gi|108777285|gb|ABG19804.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
Nepal516]
gi|108781612|gb|ABG15670.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
Antiqua]
gi|115349313|emb|CAL22282.1| regulator of nucleoside diphosphate kinase [Yersinia pestis CO92]
gi|145209314|gb|ABP38721.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
Pestoides F]
gi|149289007|gb|EDM39087.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
CA88-4125]
gi|152960227|gb|ABS47688.1| regulator of nucleoside diphosphate kinase [Yersinia
pseudotuberculosis IP 31758]
gi|162354607|gb|ABX88555.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Angola]
gi|165914534|gb|EDR33148.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. IP275]
gi|165919693|gb|EDR37026.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|166206929|gb|EDR51409.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167050023|gb|EDR61431.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054281|gb|EDR64102.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749278|gb|ACA66796.1| GreA/GreB family elongation factor [Yersinia pseudotuberculosis
YPIII]
gi|186700048|gb|ACC90677.1| GreA/GreB family elongation factor [Yersinia pseudotuberculosis
PB1/+]
gi|229678249|gb|EEO74354.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
Nepal516]
gi|229687311|gb|EEO79386.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229695620|gb|EEO85667.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229705791|gb|EEO91800.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
Pestoides A]
gi|262363349|gb|ACY60070.1| nucleoside diphosphate kinase regulator [Yersinia pestis D106004]
gi|262367273|gb|ACY63830.1| nucleoside diphosphate kinase regulator [Yersinia pestis D182038]
gi|270337069|gb|EFA47846.1| regulator of nucleoside diphosphate kinase [Yersinia pestis KIM
D27]
gi|294355745|gb|ADE66086.1| nucleoside diphosphate kinase regulator [Yersinia pestis Z176003]
gi|320017137|gb|ADW00709.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 136
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAE++ + + D + + V ++ NS ++ +V + +S+ +P+ A
Sbjct: 38 LDRAEILPPNEIPADVVTMNSRVRFLDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 97
Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157
L+G + D IS PGG++T +L++L+
Sbjct: 98 LLGLHVNDEISWKLPGGDETRITVLELLY 126
>gi|15600467|ref|NP_253961.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
PAO1]
gi|107104376|ref|ZP_01368294.1| hypothetical protein PaerPA_01005451 [Pseudomonas aeruginosa PACS2]
gi|116053423|ref|YP_793748.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218894376|ref|YP_002443246.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
LESB58]
gi|254238029|ref|ZP_04931352.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
C3719]
gi|254243839|ref|ZP_04937161.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
2192]
gi|296392131|ref|ZP_06881606.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
PAb1]
gi|313106689|ref|ZP_07792907.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
39016]
gi|9951587|gb|AAG08659.1|AE004940_3 nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
PAO1]
gi|115588644|gb|ABJ14659.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126169960|gb|EAZ55471.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
C3719]
gi|126197217|gb|EAZ61280.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
2192]
gi|218774605|emb|CAW30422.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
LESB58]
gi|310879409|gb|EFQ38003.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
39016]
Length = 134
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 55 LQNLNE-GRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
L L+E G AE LE ++RA+V+ + + +TV E++SG K Y +
Sbjct: 20 LDGLDEFGPAAEALEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSG--KEYTLTLVYP 77
Query: 113 ADVQS-GLVSISSPIARALIGKELGDIISVNAPGGE 147
DV G VSI +P+ AL+G +G I AP G+
Sbjct: 78 EDVAGEGKVSILAPVGTALLGLTIGQTIDWPAPSGK 113
>gi|194444344|ref|YP_002039856.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194403007|gb|ACF63229.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
Length = 136
Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALN----AELD----RAQMCSPQEMPNDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V S +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPVNMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 ASTHLEVLEL 124
>gi|110634551|ref|YP_674759.1| nucleoside diphosphate kinase regulator [Mesorhizobium sp. BNC1]
gi|110285535|gb|ABG63594.1| GreA/GreB family elongation factor [Chelativorans sp. BNC1]
Length = 135
Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
L E ++ELE RA V++ + + + G+T++ + G+ + +V EAD+
Sbjct: 33 LAETMISELE----RARVVEDAALPDTVVRMGSTLTYT-ADDGEPQTVSLVYPGEADIAQ 87
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146
G VS+++P+ ALIG + I A G
Sbjct: 88 GRVSVTTPVGTALIGLSVNQTIDWTARDG 116
>gi|152985312|ref|YP_001351332.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
PA7]
gi|150960470|gb|ABR82495.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
PA7]
Length = 134
Score = 37.7 bits (86), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 55 LQNLNE-GRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
L L+E G AE LE ++RA+V+ + + +TV E++SG K Y +
Sbjct: 20 LDGLDEFGPAAEALEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSG--KEYTLTLVYP 77
Query: 113 ADVQS-GLVSISSPIARALIGKELGDIISVNAPGGE 147
DV G VSI +P+ AL+G +G I AP G+
Sbjct: 78 EDVAGEGKVSILAPVGTALLGLTIGQTIDWPAPSGK 113
>gi|297625162|ref|YP_003706596.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM
17093]
gi|297166342|gb|ADI16053.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM
17093]
Length = 154
Score = 37.4 bits (85), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 81/149 (54%), Gaps = 16/149 (10%)
Query: 1 MVDKIPVTSKGFDKIQQELR--WRQQEERPRIIKAISEARAYGDLS--ENAEYQAAKELQ 56
M ++ VT +G ++Q L+ +++ EE RI++ ++ + D S E+A+ + A+
Sbjct: 1 MTREVYVTPEGMRRLQATLQEEYKRLEEATRILQELTSSSDDYDDSGLEDAKQEKAR--- 57
Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
E R+ +LE ++RA VI+ + + G+ V+L + G++ Q+V EA+V
Sbjct: 58 --LERRIDQLEEQLSRAVVIEEHART--QADLGSIVTL--QGDGEEITVQLVAPVEAEVI 111
Query: 117 S---GLVSISSPIARALIGKELGDIISVN 142
S +S SP+ +AL+G+++G+ V
Sbjct: 112 SEDIPHISNESPLGKALMGRKVGERFEVK 140
>gi|218533326|ref|YP_002424141.1| GreA/GreB family elongation factor [Methylobacterium
chloromethanicum CM4]
gi|218525629|gb|ACK86213.1| GreA/GreB family elongation factor [Methylobacterium
chloromethanicum CM4]
Length = 137
Score = 37.4 bits (85), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + R +++ GD G+ V + ++G ++ +V EAD++ G VSI +P
Sbjct: 41 LSDELDRVQIVRGGAAQGDFARMGSRVDFRDNSTGRMQSVTLVYPGEADIEQGKVSILTP 100
Query: 126 IARALIGKELGDII 139
I ALIG G I
Sbjct: 101 IGAALIGLSKGQSI 114
>gi|332995744|gb|AEF05799.1| transcription elongation factor GreB [Alteromonas sp. SN2]
Length = 56
Score = 37.4 bits (85), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 4 KIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ 50
K P +T KG+ K++QEL + ERP + ++ A + GD SENA++
Sbjct: 2 KTPLITRKGYLKLKQELDHLWRVERPETTRKVTWAASLGDRSENADFH 49
>gi|330903801|gb|EGH34373.1| transcription elongation factor GreB [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 37
Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 124 SPIARALIGKELGDIISVNAPGGEKTY 150
SP+ARAL+ KE+GD + VN P GEK +
Sbjct: 2 SPMARALLKKEVGDEVLVNTPEGEKLW 28
>gi|331089361|ref|ZP_08338261.1| hypothetical protein HMPREF1025_01844 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330405424|gb|EGG84959.1| hypothetical protein HMPREF1025_01844 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 101
Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD--IISV 141
D I TV + ++ + + Y+IV +GLVSI SP+ +AL+G + GD I V
Sbjct: 15 DEIGLNNTVEVYCEDDEEVETYRIVTSVRGSSLNGLVSIESPLGKALLGHKEGDRVFIKV 74
Query: 142 NAPGG 146
N G
Sbjct: 75 NDDFG 79
>gi|124267233|ref|YP_001021237.1| regulator of nucleoside diphosphate kinase [Methylibium
petroleiphilum PM1]
gi|124260008|gb|ABM95002.1| regulator of nucleoside diphosphate kinase [Methylibium
petroleiphilum PM1]
Length = 136
Score = 37.4 bits (85), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A +E ++ V+ + D + + V L + SG + + +A+ +G VS+
Sbjct: 32 AAIEPLLDACTVVPSRQVRPDVVTMYSQVLLQDLASGLRSRLTLCYPADAEPAAGFVSVL 91
Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
SP+ +L+G +G + + P GE ++ E++ +L+
Sbjct: 92 SPVGCSLLGLTVGAVARWSTPSGEARSAEVVALLF 126
>gi|255534407|ref|YP_003094778.1| GreA/GreB family elongation factor [Flavobacteriaceae bacterium
3519-10]
gi|255340603|gb|ACU06716.1| GreA/GreB family elongation factor [Flavobacteriaceae bacterium
3519-10]
Length = 127
Score = 37.4 bits (85), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
+ D + V + + ++ Y VG EA + SI S +A A +G ++GD+I
Sbjct: 47 LPEDVVTVDRKVRIKDHTQNKEQEYIFVGIAEAKPKRNKHSILSEMALATVGYKVGDVIE 106
Query: 141 VNAPGGEKTYEILQV 155
GGE+ EIL+V
Sbjct: 107 WPFEGGERKIEILKV 121
>gi|238758339|ref|ZP_04619517.1| Regulator of nucleoside diphosphate kinase [Yersinia aldovae ATCC
35236]
gi|238703462|gb|EEP96001.1| Regulator of nucleoside diphosphate kinase [Yersinia aldovae ATCC
35236]
Length = 150
Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAE++ + + D + + V + NS ++ +V + +S+ +P+ A
Sbjct: 52 LDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 111
Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157
L+G + D IS PGG++T +L++L+
Sbjct: 112 LLGMHVNDEISWQLPGGDETRITVLELLY 140
>gi|264679555|ref|YP_003279462.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2]
gi|299530414|ref|ZP_07043837.1| GreA/GreB family elongation factor [Comamonas testosteroni S44]
gi|262210068|gb|ACY34166.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2]
gi|298721639|gb|EFI62573.1| GreA/GreB family elongation factor [Comamonas testosteroni S44]
Length = 135
Score = 37.0 bits (84), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR A LE + RA+V+D + + + + +TV +V ++ D + V
Sbjct: 30 GRDA-LEAELDRADVLDPAEIPANVVTMNSTVRFTILEIAKTNTLTLVYPKDMDGSADKV 88
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEI 152
SI +P+ AL+G +GD + +P G+ T +
Sbjct: 89 SIFAPVGIALLGLSVGDEFKMPSPTGQVTVRV 120
>gi|325168694|ref|YP_004280484.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3]
gi|325064417|gb|ADY68106.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3]
Length = 137
Score = 37.0 bits (84), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E + ELE RA+V++ D +A G+TVS + + G ++ + AD++ +
Sbjct: 37 EKLLIELE----RADVVEDDQFPADAVAVGSTVSYLTEG-GARRTVTLCYPGLADIERSM 91
Query: 120 VSISSPIARALIGKELG 136
VS+ +PI AL+G G
Sbjct: 92 VSVLTPIGAALLGLSPG 108
>gi|319780959|ref|YP_004140435.1| transcription elongation factor GreA/GreB domain-containing protein
[Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317166847|gb|ADV10385.1| transcription elongation factor GreA/GreB domain-containing protein
[Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 140
Score = 37.0 bits (84), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL + + RA V ++M + + G+ V+ + + G+ + +V EAD+ +S+ +
Sbjct: 40 ELLSEMDRAVVTAAASMPANVVRMGSAVT-IRNDGGNIQRVTLVYPGEADISENRISVLT 98
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+ ALIG G + ++ GG + ++V+
Sbjct: 99 PMGTALIGATAGQTVCWSSRGGRELSATIEVV 130
>gi|146299949|ref|YP_001194540.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae
UW101]
gi|146154367|gb|ABQ05221.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae
UW101]
Length = 132
Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 47 AEYQAAKEL-----QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101
++YQ +EL + N +L + RA + S + I + V++ + +
Sbjct: 10 SDYQFLRELILKSKNSTNTKEANQLSQELDRAVISKESELDSSVIRINSLVTIEDVKANK 69
Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ QIV ADV+ +SI +P++ A+IG + D + P G KT +I+ V
Sbjct: 70 QMKIQIVLPSYADVKQSKISILAPLSVAIIGFKENDEVDWELPAGIKTLKIVAV 123
>gi|37676834|ref|NP_937230.1| nucleoside diphosphate kinase regulator [Vibrio vulnificus YJ016]
gi|37201378|dbj|BAC97200.1| transcription elongation factor [Vibrio vulnificus YJ016]
Length = 135
Score = 37.0 bits (84), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV-GDQEADVQSGLVS 121
+ +LEN + RA V+ M + + +TV S +V DQ + VS
Sbjct: 31 LEKLENELDRANVLAPQQMPDNIVTMNSTVRFTFVGSDKVMEKTLVYPDQVRNPDD--VS 88
Query: 122 ISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
I +P+ AL+G +G ++ PGG E+T EIL+V +
Sbjct: 89 IFAPVGSALLGLSVGQQLTWPMPGGAERTIEILEVTY 125
>gi|292493343|ref|YP_003528782.1| transcription elongation factor [Nitrosococcus halophilus Nc4]
gi|291581938|gb|ADE16395.1| transcription elongation factor [Nitrosococcus halophilus Nc4]
Length = 129
Score = 37.0 bits (84), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + I A V+ + +S + + + V ++ +G ++ ++V +EA+ +G +S+ +P
Sbjct: 26 LAHKIDYAIVVPVGHISSNIVTMHSRVIYLDGKTGIRREVELVYPKEANSDTGKISVLAP 85
Query: 126 IARALIGKELGDIISVNAPGGE 147
I AL+G +G P GE
Sbjct: 86 IGSALLGLSVGQATDWVFPSGE 107
>gi|87198849|ref|YP_496106.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
gi|87134530|gb|ABD25272.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
Length = 159
Score = 37.0 bits (84), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 62 RMAELENI----ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
R+ E+ + I RA+++ + D +A + V ++ +G + +V EAD+
Sbjct: 53 RLPEISRMLMEEIGRAQIVPAQDLPPDAVAMRSVVRFRDEATGAVRTVTLVYPAEADIAQ 112
Query: 118 GLVSISSPIARALIGKELGDIIS-VNAPGGEKTYEILQVL 156
VSI +P+ LIG G I N G ++ I QV+
Sbjct: 113 DRVSILTPVGAGLIGLRAGQSIDWPNVRGKQRAITIEQVI 152
>gi|237730594|ref|ZP_04561075.1| nucleoside diphosphate kinase regulator [Citrobacter sp. 30_2]
gi|226906133|gb|EEH92051.1| nucleoside diphosphate kinase regulator [Citrobacter sp. 30_2]
Length = 136
Score = 37.0 bits (84), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 8/124 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E + LN AEL+ RA++ TM D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAFAGLPIADALN----AELD----RAQMCSPETMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPATMTDSNTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKTY 150
T+
Sbjct: 115 TSTH 118
>gi|270602105|ref|ZP_06221570.1| transcription elongation factor GreA [Haemophilus influenzae
HK1212]
gi|270318242|gb|EFA29436.1| transcription elongation factor GreA [Haemophilus influenzae
HK1212]
Length = 33
Score = 37.0 bits (84), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 1 IARGLIGKELDDTVNITTPGGIVEFDIIEVNYI 33
>gi|315178622|gb|ADT85536.1| hypothetical protein/transcription elongation factor GreA [Vibrio
furnissii NCTC 11218]
Length = 138
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 51/130 (39%), Gaps = 13/130 (10%)
Query: 29 RIIKAISEA-RAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
R I A +A R + S YQ+ L L + + RIA
Sbjct: 4 RFIMACGDAIRTWWLTSRFVTYQSPLRLLQLQH------------TCALQKRCRNATRIA 51
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
G TV LV+ + +V + SG ++ S + AL+G+ D++ + G
Sbjct: 52 LGDTVHLVDTERYHQYRMTLVASHQHQPLSGQLAWDSYLGSALMGRARDDVLELRILGRS 111
Query: 148 KTYEILQVLW 157
+ Y I ++++
Sbjct: 112 RRYAITEIVY 121
>gi|253686674|ref|YP_003015864.1| GreA/GreB family elongation factor [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251753252|gb|ACT11328.1| GreA/GreB family elongation factor [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 136
Score = 36.6 bits (83), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAE++ +++ + + V + N+ ++ +V +S+ +P+ A
Sbjct: 38 LDRAEILPSASIPSHVVTMNSRVRFRDLNTNEEHIRTLVYPAAVKDSQEPLSVMAPLGAA 97
Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157
L+G +G+ I+ P GE+T E+L++L+
Sbjct: 98 LLGMHVGNAITWQLPNGEETRIEVLELLY 126
>gi|209694346|ref|YP_002262274.1| hypothetical protein VSAL_I0758 [Aliivibrio salmonicida LFI1238]
gi|208008297|emb|CAQ78443.1| hypothetical protein VSAL_I0758 [Aliivibrio salmonicida LFI1238]
Length = 173
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 29/42 (69%)
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
D+ L++ S+P+ +A+IGK+LGD ++ G ++ YEI+ V
Sbjct: 131 DMTFLLITPSAPLGKAMIGKQLGDEFELDLSGRKQQYEIIGV 172
>gi|28867461|ref|NP_790080.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
pv. tomato str. DC3000]
gi|213970732|ref|ZP_03398857.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
pv. tomato T1]
gi|301382620|ref|ZP_07231038.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
tomato Max13]
gi|302061760|ref|ZP_07253301.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
tomato K40]
gi|302133639|ref|ZP_07259629.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28850695|gb|AAO53775.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
pv. tomato str. DC3000]
gi|213924566|gb|EEB58136.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
pv. tomato T1]
Length = 135
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 56 QNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
Q+ N + L+ + RAE V+ + + + V E+ SG + ++V Q+A
Sbjct: 24 QDENTPGLQALQAELDRAEQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 83
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ G VS+ +P+ AL+G ++G I APGG+
Sbjct: 84 AE-GTVSVLAPMGSALLGLQVGQHIDWPAPGGK 115
>gi|331017912|gb|EGH97968.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 135
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 56 QNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
Q+ N + L+ + RAE V+ + + + V E+ SG + ++V Q+A
Sbjct: 24 QDENTPGLQALQAELDRAEQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 83
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ G VS+ +P+ AL+G ++G I APGG+
Sbjct: 84 AE-GTVSVLAPMGSALLGLQVGQHIDWPAPGGK 115
>gi|260771051|ref|ZP_05879979.1| hypothetical protein VFA_004117 [Vibrio furnissii CIP 102972]
gi|260613940|gb|EEX39131.1| hypothetical protein VFA_004117 [Vibrio furnissii CIP 102972]
Length = 138
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%)
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
RIA G TV LV+ + +V + SG ++ S + AL+G+ D++ +
Sbjct: 49 RIALGDTVHLVDTERYHQYRMTLVASHQHQPLSGQLAWDSYLGSALMGRARDDVLELRIL 108
Query: 145 GGEKTYEILQVLW 157
G + Y I ++++
Sbjct: 109 GRSRRYAITEIVY 121
>gi|126174724|ref|YP_001050873.1| GreA/GreB family elongation factor [Shewanella baltica OS155]
gi|153001023|ref|YP_001366704.1| GreA/GreB family elongation factor [Shewanella baltica OS185]
gi|160875736|ref|YP_001555052.1| GreA/GreB family elongation factor [Shewanella baltica OS195]
gi|217973017|ref|YP_002357768.1| GreA/GreB family elongation factor [Shewanella baltica OS223]
gi|304409101|ref|ZP_07390722.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
gi|307303104|ref|ZP_07582859.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
gi|125997929|gb|ABN62004.1| GreA/GreB family elongation factor [Shewanella baltica OS155]
gi|151365641|gb|ABS08641.1| GreA/GreB family elongation factor [Shewanella baltica OS185]
gi|160861258|gb|ABX49792.1| GreA/GreB family elongation factor [Shewanella baltica OS195]
gi|217498152|gb|ACK46345.1| GreA/GreB family elongation factor [Shewanella baltica OS223]
gi|304352922|gb|EFM17319.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
gi|306913464|gb|EFN43886.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
gi|315267925|gb|ADT94778.1| GreA/GreB family elongation factor [Shewanella baltica OS678]
Length = 135
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A LE + RA+++ S M + + + V +S + ++V ++ + +G +SI
Sbjct: 32 AALEAELDRADIVPASQMPANVVTMNSEVKFSVSSSNETFCLRLVYPKDVN-GAGTISIL 90
Query: 124 SPIARALIGKELGDIISVNAPGG 146
+P+ AL+G GD I PGG
Sbjct: 91 APVGSALLGLSQGDEIEWPGPGG 113
>gi|330878495|gb|EGH12644.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 135
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 56 QNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
Q+ N + L+ + RAE V+ + + + V E+ SG + ++V Q+A
Sbjct: 24 QDENTPGLQALQAELDRAEHVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 83
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ G VS+ +P+ AL+G ++G I APGG+
Sbjct: 84 AE-GTVSVLAPMGSALLGLQVGQHIDWPAPGGK 115
>gi|299140367|ref|ZP_07033528.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
gi|299140416|ref|ZP_07033572.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
gi|298597600|gb|EFI53782.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
gi|298597642|gb|EFI53819.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
Length = 70
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
G E D+ VS SP+ RAL+ GD + + APGG+++ +L+V +
Sbjct: 1 GADEVDLDRNHVSWVSPLGRALMRSAEGDSVVLEAPGGKESLTVLEVRY 49
>gi|270598461|ref|ZP_06221523.1| transcription elongation factor greB [Haemophilus influenzae
HK1212]
gi|270318308|gb|EFA29477.1| transcription elongation factor greB [Haemophilus influenzae
HK1212]
Length = 50
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+SI SP+ARALIGK L D + V P G T I ++
Sbjct: 7 ISIDSPVARALIGKTLDDEVRVETPSGFITLYINKI 42
>gi|119774570|ref|YP_927310.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
gi|119767070|gb|ABL99640.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
Length = 136
Score = 36.6 bits (83), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%)
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
N+ LE ++RAEV M + + + V +S ++ ++V ++ +
Sbjct: 27 NDAGKVALEAELSRAEVRPSKDMPANVVTMNSEVRFTVSSSAEEFCLRLVYPKDVSAKGD 86
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKT 149
VSI +P+ AL+G GD + PGG T
Sbjct: 87 TVSILAPVGSALLGLAQGDEMDWPRPGGGTT 117
>gi|220934850|ref|YP_002513749.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. HL-EbGR7]
gi|219996160|gb|ACL72762.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. HL-EbGR7]
Length = 137
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 5/96 (5%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+AELE RA V++ S + + + V + G + +V D +S+
Sbjct: 36 LAELE----RANVVEPSQVPPTLVTMNSRVRFRVEPEGREFQRTLVYPSGMDGDEEKISV 91
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+PI AL+G +GD I+ P GGE I+++L+
Sbjct: 92 LAPIGSALLGLSVGDSIAWPTPKGGEMNVRIMEILY 127
>gi|307543993|ref|YP_003896472.1| nucleoside diphosphate kinase regulator [Halomonas elongata DSM
2581]
gi|307216017|emb|CBV41287.1| nucleoside diphosphate kinase regulator [Halomonas elongata DSM
2581]
Length = 136
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + R EV++ + D I+ + V + + +V D VS+ +P
Sbjct: 33 LEEELERGEVLEPEQIPADVISMNSRVRFTDLTREREIVKTLVYPHALDATEDGVSVMAP 92
Query: 126 IARALIGKELGDII-SVNAPGGEKT-YEILQVLW 157
+ AL+G +GD+I PGG++T + +LW
Sbjct: 93 VGAALLGLHVGDVIEEWPLPGGKQTSLRVDAILW 126
>gi|89068497|ref|ZP_01155894.1| putative nucleoside diphosphate kinase regulator [Oceanicola
granulosus HTCC2516]
gi|89045916|gb|EAR51976.1| putative nucleoside diphosphate kinase regulator [Oceanicola
granulosus HTCC2516]
Length = 150
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 55 LQNLNEGRMAELENI-------ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107
L++L EG + ++ + RA ++ + + + +A G V+ ++ +G K+
Sbjct: 31 LESLAEGALQRNPDLADRLLGELGRARIVPPARLPANVVAIGRAVTYRDETTGLAKSVVP 90
Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
V ++AD+ G +S+ +PI ALIG G I G + +L VL +
Sbjct: 91 VFPEDADIARGRISVLTPIGVALIGLAEGAAIPWETRDGSR--RVLSVLSV 139
>gi|157146775|ref|YP_001454094.1| nucleoside diphosphate kinase regulator [Citrobacter koseri ATCC
BAA-895]
gi|157083980|gb|ABV13658.1| hypothetical protein CKO_02549 [Citrobacter koseri ATCC BAA-895]
Length = 136
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA++ M D + + V + G+ + +V + +S+ +P+ A
Sbjct: 38 LDRAQMCSPEAMPHDVVTMNSRVKFRNLSDGEIRVRTLVYPANMTDSNTQLSVMAPVGAA 97
Query: 130 LIGKELGDIISVNAPGGEKTY-EILQV 155
L+G +GD I + PGG T+ E+L++
Sbjct: 98 LLGLRVGDTIHWDLPGGASTHLEVLEL 124
>gi|154246864|ref|YP_001417822.1| nucleoside diphosphate kinase regulator [Xanthobacter autotrophicus
Py2]
gi|154160949|gb|ABS68165.1| GreA/GreB family elongation factor [Xanthobacter autotrophicus Py2]
Length = 143
Score = 36.2 bits (82), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 22 RQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81
R Q PR+ + + L+ A A + ++ E +AEL+ RA ++ I +
Sbjct: 7 RSQSRSPRLPALVLSHPDHERLAGLAT-AALDRIPDVAEELLAELD----RARLVPIGRV 61
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
+ G+ V+ + G+ + +V ++AD+ + VS+ +PI ALIG G I
Sbjct: 62 PATAVQMGSKVTY--EAGGNARTVTLVYPEDADIAAARVSVMTPIGAALIGLSKGQSICW 119
Query: 142 NAPGGEK 148
A G +
Sbjct: 120 TARDGRR 126
>gi|212711074|ref|ZP_03319202.1| hypothetical protein PROVALCAL_02143 [Providencia alcalifaciens DSM
30120]
gi|212686242|gb|EEB45770.1| hypothetical protein PROVALCAL_02143 [Providencia alcalifaciens DSM
30120]
Length = 136
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
+P II +A L E A Y + LN+ EL+ RA+++ + D +
Sbjct: 3 KPTIIINDLDAERLDALMEQAAYAGTPVAEALND----ELD----RADIVSPQEIPADVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+TV ++ S +++ +V + +S+ +PI AL+G + D IS P G
Sbjct: 55 TMNSTVRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWALPNG 114
Query: 147 EKT-YEILQVLW 157
+T +L++++
Sbjct: 115 VETRVRVLEIVY 126
>gi|87119377|ref|ZP_01075275.1| hypothetical protein MED121_13945 [Marinomonas sp. MED121]
gi|86165768|gb|EAQ67035.1| hypothetical protein MED121_13945 [Marinomonas sp. MED121]
Length = 160
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 84 DRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQSG---LVSISSPIARALIGKELGD 137
D IA GA V L E+++G + I G Q D + L++ SSP+ RAL+G L D
Sbjct: 83 DAIAMGALVEL-EESAGKQITCFISPCAGGQAFDFEGKNCLLITPSSPLGRALLGANLED 141
Query: 138 IISVNAPGGEKTYEILQV 155
+ V K YEI +
Sbjct: 142 EVKVTIGADTKFYEITHL 159
>gi|320177450|gb|EFW52449.1| Regulator of nucleoside diphosphate kinase [Shigella dysenteriae
CDC 74-1112]
Length = 136
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E+ Y +LN AEL+ RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEHPAYAGLPIADSLN----AELD----RAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 VATHLEVLEL 124
>gi|50119243|ref|YP_048410.1| nucleoside diphosphate kinase regulator [Pectobacterium
atrosepticum SCRI1043]
gi|49609769|emb|CAG73203.1| putative regulator of nucleoside diphosphate kinase [Pectobacterium
atrosepticum SCRI1043]
Length = 136
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RAE++ +++ + + V + N+ ++ +V +S+ +P
Sbjct: 34 LNDELDRAEILPSASIPSHVVTMNSRVRFRDLNTNEEHIRTLVYPAAVKDSKEPLSVMAP 93
Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+ AL+G +G I+ P GE+T E+L++L+
Sbjct: 94 LGAALLGMHVGSAITWQLPNGEETRIEVLELLY 126
>gi|330962357|gb|EGH62617.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 135
Score = 36.2 bits (82), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 66 LENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L+ + RAE V+ + + + V E+ SG + +V Q+A V+ G VS+ +
Sbjct: 34 LQAELDRAEQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLTLVYPQDAGVE-GTVSVLA 92
Query: 125 PIARALIGKELGDIISVNAPGGE 147
P+ AL+G ++G I APGG+
Sbjct: 93 PMGSALLGLQVGQHIDWPAPGGK 115
>gi|257054902|ref|YP_003132734.1| nucleoside diphosphate kinase regulator [Saccharomonospora viridis
DSM 43017]
gi|256584774|gb|ACU95907.1| transcription elongation factor [Saccharomonospora viridis DSM
43017]
Length = 154
Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 75/152 (49%), Gaps = 12/152 (7%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P T ++ ++LR ++ E PR+ + GD ++ A+ E+ + + R+ E
Sbjct: 9 PATRSRLERELEQLRKQRAELLPRLGED-----PLGDSADQADLVERSEVVSRLDRRINE 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQ-SGLVSIS 123
+ +++ IST S + G V+L + G ++ +VG EAD + ++
Sbjct: 64 VVDLLHGQ----ISTESEGGLPSGTKVTL-RFDDGSVEDMVVVGVAAEADEDDTSTLTAD 118
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +AL G + GD ++ P GE T EI+++
Sbjct: 119 SPLGQALAGHQEGDTVTYRTPKGEVTAEIVKL 150
>gi|152995644|ref|YP_001340479.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1]
gi|150836568|gb|ABR70544.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1]
Length = 137
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+L+ I RAE+++ M + + +TV+ +S + + +V ++A+ VS+ +
Sbjct: 34 DLQEEINRAEIVEPRDMPDNIVTMNSTVTFKVLSSEKEFSKTLVYPKDANGAEDTVSVLA 93
Query: 125 PIARALIGKELGDIISVNAPGGE 147
P+ AL+G + GD I P G+
Sbjct: 94 PVGSALLGLKEGDQIDWPKPNGD 116
>gi|254562534|ref|YP_003069629.1| elongation factor, GreA/GreB family [Methylobacterium extorquens
DM4]
gi|254269812|emb|CAX25787.1| Putative elongation factor, GreA/GreB family [Methylobacterium
extorquens DM4]
Length = 107
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L + + R +++ D G+ V + ++G ++ +V EAD++ G VSI
Sbjct: 9 AFLSDELDRVQIVRGGAAQRDFARMGSRVDFRDNSTGRTQSVTLVYPGEADIEQGKVSIL 68
Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQV 155
+PI ALIG G I+ GE + +L+V
Sbjct: 69 TPIGAALIGLSEGQSINWATRTGETRRLTVLEV 101
>gi|238793739|ref|ZP_04637361.1| Regulator of nucleoside diphosphate kinase [Yersinia intermedia
ATCC 29909]
gi|238726980|gb|EEQ18512.1| Regulator of nucleoside diphosphate kinase [Yersinia intermedia
ATCC 29909]
Length = 152
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAE++ + + D + + V + NS ++ +V + +S+ +P+ A
Sbjct: 54 LDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 113
Query: 130 LIGKELGDIISVNAPGGEKT 149
L+G + D IS PGG++T
Sbjct: 114 LLGMHINDEISWKLPGGDET 133
>gi|197103524|ref|YP_002128901.1| transcription elongation factor [Phenylobacterium zucineum HLK1]
gi|196476944|gb|ACG76472.1| transcription elongation factor [Phenylobacterium zucineum HLK1]
Length = 143
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A L N ++RA ++ D + G+ V + + + ++V +EA L +
Sbjct: 37 LALLWNELSRATLVQAGRAPADVVRLGSAVEYTDLTRRESRRIRLVLPREAR-PPALEPV 95
Query: 123 SSPIARALIGKELGDIISVNAPGGE 147
S I AL+G GD+ AP GE
Sbjct: 96 SGTIGAALLGLRPGDVFHWRAPSGE 120
>gi|148555405|ref|YP_001262987.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
gi|148500595|gb|ABQ68849.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
Length = 166
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP I SEA +++ AE + + ++E + E++ RA + + + D +
Sbjct: 38 RPAIHMIDSEAETLANMAVAAE----ERIPQVSELLLEEID----RATLYKAARIPADVV 89
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V V++ +G + Q+V ++AD+ +G VSI + + LIG G S+ PG
Sbjct: 90 TMHSHVEFVDEANGTSRTVQLVYPKDADIDAGRVSILTLVGAGLIGLREGQ--SILWPGR 147
Query: 147 EKTYEILQV 155
+ +L +
Sbjct: 148 DGHRRLLTI 156
>gi|330884640|gb|EGH18789.1| transcription elongation factor GreB [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 37
Score = 35.8 bits (81), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ KE GD + VN P GEK + + +++
Sbjct: 2 SPMARALLKKEEGDEVLVNTPEGEKLWFVNSIVY 35
>gi|146294926|ref|YP_001185350.1| GreA/GreB family elongation factor [Shewanella putrefaciens
CN-32]
gi|145566616|gb|ABP77551.1| GreA/GreB family elongation factor [Shewanella putrefaciens
CN-32]
Length = 66
Score = 35.8 bits (81), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
+T +G+ + +EL++ +E RP+I + EA A GD SENA+
Sbjct: 6 ITRQGWLALDKELKYLWKEYRPQITLKVQEAAAQGDRSENAD 47
>gi|152982035|ref|YP_001353580.1| GreA family transcription elongation factor [Janthinobacterium sp.
Marseille]
gi|151282112|gb|ABR90522.1| transcription elongation factor, greA family [Janthinobacterium sp.
Marseille]
Length = 139
Score = 35.4 bits (80), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 62 RMAELE--------NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
RM E+E +II+ + ++ + + +TVS ++ + + IV Q+A
Sbjct: 24 RMGEVEINAGEQLIDIISTSIILPVDVQRKGYVTLYSTVSYSPVDTEEVRKLTIVCPQDA 83
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ Q L+S +PI ALIG++ + V P K E L++L
Sbjct: 84 NPQLALISALTPIGLALIGRKALTTVEVALPS--KRVEKLKIL 124
>gi|325120614|emb|CBZ56168.1| hypothetical protein NCLIV_065940 [Neospora caninum Liverpool]
Length = 2735
Score = 35.4 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGLVSISSPIAR 128
R+E + S+ SGD F A SLV++ G +N ++ + D V S L+S+SSP+ R
Sbjct: 194 RSESGNASSGSGDTSPFAAFCSLVKEALGAGQNAEVAAELLYDTVASHLLSVSSPLTR 251
>gi|260770384|ref|ZP_05879317.1| regulator of nucleoside diphosphate kinase [Vibrio furnissii CIP
102972]
gi|260615722|gb|EEX40908.1| regulator of nucleoside diphosphate kinase [Vibrio furnissii CIP
102972]
gi|315181451|gb|ADT88364.1| nucleoside diphosphate kinase regulator [Vibrio furnissii NCTC
11218]
Length = 135
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +LE+ + RA + + M + ++ +TV + +V E S +SI
Sbjct: 31 LEKLEDELDRATINEPQDMPDNVVSMNSTVRFKFTGKDEIIQKNLVYPHEVK-NSDDISI 89
Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+P+ AL+G G ++ PGG EKT EI++V++
Sbjct: 90 FAPVGSALLGLAAGQTLTWPMPGGAEKTIEIIEVVY 125
>gi|300023786|ref|YP_003756397.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525607|gb|ADJ24076.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans
ATCC 51888]
Length = 164
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
+PRI+ + ++ + DL+ A + + Q ELE + RAEV+ +++ + +
Sbjct: 10 KPRIVVSDTDFKRLTDLALGATDRFPEVAQ--------ELEIEMGRAEVVQAASVPANVV 61
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA-PG 145
+ V +S ++ ++V EAD+ +S+ +PI ALIG G I+ A G
Sbjct: 62 RMDSIVEF-RTDSAQQRRVKLVFPGEADISQDKISVLTPIGVALIGLAAGQSITWTARDG 120
Query: 146 GEKTYEILQV 155
+ T ++ V
Sbjct: 121 KQHTLTVIAV 130
>gi|193063403|ref|ZP_03044493.1| regulator of nucleoside diphosphate kinase [Escherichia coli E22]
gi|260842837|ref|YP_003220615.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
O103:H2 str. 12009]
gi|192930987|gb|EDV83591.1| regulator of nucleoside diphosphate kinase [Escherichia coli E22]
gi|257757984|dbj|BAI29481.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
O103:H2 str. 12009]
Length = 136
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y + LN AEL+ RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLRIADALN----AELD----RAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 VATHLEVLEL 124
>gi|227114046|ref|ZP_03827702.1| nucleoside diphosphate kinase regulator [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 136
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA+++ +++ + + V + N+ ++ +V +S+ +P+ A
Sbjct: 38 LDRADILPAASIPSHVVTMNSRVRFRDLNTNEEHIRTLVYPAAVKDSQEPLSVMAPLGAA 97
Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157
L+G +G+ I+ P GE+T E+L++L+
Sbjct: 98 LLGMHVGNSITWQLPNGEETRIEVLELLY 126
>gi|300776138|ref|ZP_07085997.1| GreA/GreB family elongation factor [Chryseobacterium gleum ATCC
35910]
gi|300505271|gb|EFK36410.1| GreA/GreB family elongation factor [Chryseobacterium gleum ATCC
35910]
Length = 126
Score = 35.4 bits (80), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%)
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
+ D + V+L + + Y V + ++ SI S IA A++G ++GD+IS
Sbjct: 47 LPADIVTVDRKVTLKDHTLNFEHEYIFVPSVKEKLKKNKYSILSDIALAVVGYKVGDVIS 106
Query: 141 VNAPGGEKTYEILQV 155
GE+ EIL+V
Sbjct: 107 WPFRDGERKIEILKV 121
>gi|241764171|ref|ZP_04762206.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN]
gi|241366508|gb|EER61008.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN]
Length = 303
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELE+ I RA V+D ++ D + + +L++ + + + +V +EAD ++G +S+ S
Sbjct: 203 ELEHEIERAIVVDPRQVAEDVVTMNSK-ALLQVDDAELE-VALVYPEEADDRAGKLSVCS 260
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I A++G + GD S P I +VL+
Sbjct: 261 DIGTAILGYKEGDAFSWRIPNRTCHIRIAKVLY 293
>gi|88813317|ref|ZP_01128556.1| GreA/GreB family elongation factor [Nitrococcus mobilis Nb-231]
gi|88789489|gb|EAR20617.1| GreA/GreB family elongation factor [Nitrococcus mobilis Nb-231]
Length = 137
Score = 35.0 bits (79), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L+ + RAEV+ + + + V +NSG++ +V ++ + +S+
Sbjct: 33 AALQAELDRAEVVPPEQVPPSVVTMNSAVRFSIENSGEEFCLTLVYPKDVGGNADRISVL 92
Query: 124 SPIARALIGKELGDIISVNAPGG 146
+P+ AL+G +GD + PGG
Sbjct: 93 APVGSALLGLSVGDELEWPRPGG 115
>gi|300088754|ref|YP_003759276.1| transcription elongation factor GreA/GreB domain-containing protein
[Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299528487|gb|ADJ26955.1| transcription elongation factor GreA/GreB domain protein
[Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 1597
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 91 TVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
TV V+ + + ++ ++++ + G ++I++PIARALIG LG + P G
Sbjct: 1528 TVVYVDIENPQVEKQALITCEKSNPEWGAININTPIARALIGATLGSTVEAKLPKG 1583
>gi|56459737|ref|YP_155018.1| GreA/GreB family transcription elongation factor [Idiomarina
loihiensis L2TR]
gi|56178747|gb|AAV81469.1| Transcription elongation factor greA/greB family [Idiomarina
loihiensis L2TR]
Length = 151
Score = 35.0 bits (79), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
RI GA+ L + ++ ++V + AD + LVS SP+ L+G +GDI +V
Sbjct: 71 RIRVGASAVLRNVKTMEQVKVRLVPPELADTDNYLVSFISPLGSTLLGLRVGDIATVIVK 130
Query: 145 GGEKTYEILQV 155
+E+L V
Sbjct: 131 DISIKWEVLTV 141
>gi|332527739|ref|ZP_08403780.1| nucleoside diphosphate kinase regulator [Rubrivivax benzoatilyticus
JA2]
gi|332112137|gb|EGJ12113.1| nucleoside diphosphate kinase regulator [Rubrivivax benzoatilyticus
JA2]
Length = 139
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+++ AEV+D T+ D + + V L DQ ++ VS+ SP+
Sbjct: 41 DMLDLAEVVDPKTLPADVVTMRSRVVLSRGGELLDLTLCYPDDQPDGIER--VSVFSPLG 98
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156
AL+G +GD I P GE+ ++ L
Sbjct: 99 MALLGARVGDSIGWRGPAGEEHTARIEAL 127
>gi|297518602|ref|ZP_06936988.1| nucleoside diphosphate kinase regulator [Escherichia coli OP50]
Length = 136
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALN----AELD----RAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVHPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 VATHLEVLEL 124
>gi|238799365|ref|ZP_04642803.1| Regulator of nucleoside diphosphate kinase [Yersinia mollaretii
ATCC 43969]
gi|238716795|gb|EEQ08673.1| Regulator of nucleoside diphosphate kinase [Yersinia mollaretii
ATCC 43969]
Length = 152
Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAE++ + + D + + V + N+ ++ +V + +S+ +P+ A
Sbjct: 54 LDRAEILPPNAIPADVVTMNSRVRFRDLNNQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 113
Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157
L+G + D IS PGG++T +L++L+
Sbjct: 114 LLGLHVNDEISWKLPGGDETRITVLELLY 142
>gi|238754630|ref|ZP_04615983.1| Regulator of nucleoside diphosphate kinase [Yersinia ruckeri ATCC
29473]
gi|238707089|gb|EEP99453.1| Regulator of nucleoside diphosphate kinase [Yersinia ruckeri ATCC
29473]
Length = 136
Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA+++ S + D + + V + NS ++ +V S +S+ +P+ A
Sbjct: 38 LDRADILPPSEIPADVVTMNSRVRFRDLNSEEEHIRTLVYPASLKDSSEQISVMAPLGAA 97
Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVLW 157
L+G + D I+ PGG E +L++L+
Sbjct: 98 LLGLHVNDEINWTLPGGDEARITVLELLY 126
>gi|88797807|ref|ZP_01113395.1| nucleoside diphosphate kinase regulator [Reinekea sp. MED297]
gi|88779484|gb|EAR10671.1| nucleoside diphosphate kinase regulator [Reinekea sp. MED297]
Length = 142
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE+ + RA V + + D + G+ V +SG ++V ++ +S+ SP
Sbjct: 34 LESELDRATVCLPNELPADAVQLGSVVRFQLSSSGQVYLRELVLPEQRQ-HDEHISVLSP 92
Query: 126 IARALIGKELGDIIS-VNAPGGEKTYEILQV 155
+ AL+G +GD I+ ++PG T IL V
Sbjct: 93 VGMALLGLRVGDEIAWPSSPGQSTTVRILDV 123
>gi|315127979|ref|YP_004069982.1| transcription elongation factor and transcript cleavage
[Pseudoalteromonas sp. SM9913]
gi|315016493|gb|ADT69831.1| transcription elongation factor and transcript cleavage
[Pseudoalteromonas sp. SM9913]
Length = 47
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
+T +G+ ++QQE E+RP + K +S A + GD SENA+
Sbjct: 6 ITREGYLQLQQEHDHLWNEKRPEVTKIVSWAASLGDRSENAD 47
>gi|291326552|ref|ZP_06124973.2| regulator of nucleoside diphosphate kinase [Providencia rettgeri
DSM 1131]
gi|291313526|gb|EFE53979.1| regulator of nucleoside diphosphate kinase [Providencia rettgeri
DSM 1131]
Length = 143
Score = 35.0 bits (79), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
+P II +A L E Y + LN+ EL+ RA+++ + D +
Sbjct: 10 KPTIIINDLDAERLDALMEQPAYAGTPVAEALND----ELD----RADILSPQEIPADVV 61
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+TV ++ S +++ +V + +S+ +PI AL+G + D IS P G
Sbjct: 62 TMNSTVRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWELPNG 121
Query: 147 EKT-YEILQVLW 157
+T +L++++
Sbjct: 122 VQTRVRVLEIVY 133
>gi|183597965|ref|ZP_02959458.1| hypothetical protein PROSTU_01315 [Providencia stuartii ATCC 25827]
gi|188022738|gb|EDU60778.1| hypothetical protein PROSTU_01315 [Providencia stuartii ATCC 25827]
Length = 136
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
+P II +A L E A Y LN+ EL+ RA+++ + D +
Sbjct: 3 KPTIIINDLDAERLDALLEQAAYAGTPVADALND----ELD----RADILSPQEIPADVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+TV ++ S +++ +V + +S+ +PI AL+G + D IS P G
Sbjct: 55 TMNSTVRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWALPNG 114
Query: 147 EKT-YEILQVLW 157
+T +L++++
Sbjct: 115 VETRVRVLEIIY 126
>gi|110835187|ref|YP_694046.1| nucleoside diphosphate kinase regulator [Alcanivorax borkumensis
SK2]
gi|110648298|emb|CAL17774.1| nucleoside diphosphate kinase regulator [Alcanivorax borkumensis
SK2]
Length = 133
Score = 35.0 bits (79), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 60 EGRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
+G +A+ LE + RA V++ M D + + + E+ G + +V + Q
Sbjct: 24 DGEVADGLEEELLRATVVEPKDMPADVVTMNSRIRCREQGRGREMCLTLVYPHDTGPQR- 82
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155
VSI +P+ AL+G +G I AP G+ EIL V
Sbjct: 83 -VSILAPVGAALLGLSVGQSIDWPAPNGKVLKLEILAV 119
>gi|109896618|ref|YP_659873.1| GreA/GreB family elongation factor [Pseudoalteromonas atlantica
T6c]
gi|109698899|gb|ABG38819.1| GreA/GreB family elongation factor [Pseudoalteromonas atlantica
T6c]
Length = 128
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 9/131 (6%)
Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
E++P II IS A DL+E EYQ E L + + +EN + RA ++ + +
Sbjct: 2 EKQPDII--ISTA----DLAE-LEYQL--ERSKLPDDAIRAIENELDRATIVACKDLPEN 52
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
+A G+ V+ +S + ++ +S+ +PI ALIG G I
Sbjct: 53 VVAIGSQVTFKILDSQKVFTKALCLPHDSVKFEDSISVFAPIGSALIGLSTGQCIKWQTQ 112
Query: 145 GGEKTYEILQV 155
G+++ EI++V
Sbjct: 113 RGQQSVEIIKV 123
>gi|240140105|ref|YP_002964582.1| putative transcription elongation factor (GreA/GreB domain protein)
[Methylobacterium extorquens AM1]
gi|240010079|gb|ACS41305.1| Putative transcription elongation factor (GreA/GreB domain protein)
[Methylobacterium extorquens AM1]
Length = 107
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L + + R +++ D G+ V + ++G ++ +V EAD++ G +SI
Sbjct: 9 AFLSDELDRVQIVRGGAAQRDFARMGSRVDFRDNSTGRTQSVTLVYPGEADIEQGKISIL 68
Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQV 155
+PI ALIG G I GE + +L+V
Sbjct: 69 TPIGAALIGLSEGQSIDWATRTGETRRLTVLEV 101
>gi|157375539|ref|YP_001474139.1| hypothetical protein Ssed_2402 [Shewanella sediminis HAW-EB3]
gi|157317913|gb|ABV37011.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
Length = 168
Score = 35.0 bits (79), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
DV+ +++ SSP+ AL+G+ L D + +N K YEI+ V
Sbjct: 126 DVEVMVITPSSPLGNALMGRMLDDTVVINIGDNRKEYEIIAV 167
>gi|260773794|ref|ZP_05882709.1| regulator of nucleoside diphosphate kinase [Vibrio metschnikovii
CIP 69.14]
gi|260610755|gb|EEX35959.1| regulator of nucleoside diphosphate kinase [Vibrio metschnikovii
CIP 69.14]
Length = 136
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LEN + RA V++ + D + +TV + S D +V + +SI
Sbjct: 32 LERLENELDRATVLNPEEIPADVVTMNSTVKFKFQGSDDVMQKTLVYPHDVKGNDD-ISI 90
Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+P+ AL+G G ++ P G E+T EI+ ++
Sbjct: 91 FAPVGSALLGLSKGQQLTWPMPNGVERTIEIIDII 125
>gi|227326625|ref|ZP_03830649.1| nucleoside diphosphate kinase regulator [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 136
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA+++ +++ + + V + N+ ++ +V +S+ +P+ A
Sbjct: 38 LDRADILPSASIPSHVVTMNSRVRFRDLNTNEEHIRTLVYPAAVKDSKEPLSVMAPLGAA 97
Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157
L+G +G+ I+ P GE+T E+L++L+
Sbjct: 98 LLGMHVGNSITWQLPNGEETRIEVLELLY 126
>gi|261819630|ref|YP_003257736.1| nucleoside diphosphate kinase regulator [Pectobacterium wasabiae
WPP163]
gi|261603643|gb|ACX86129.1| GreA/GreB family elongation factor [Pectobacterium wasabiae WPP163]
Length = 136
Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAE++ +++ + + V + N+ ++ +V +S+ +P+ A
Sbjct: 38 LDRAEILPSASIPSHVVTMNSRVRFRDLNTNEEHIRTLVYPAAVKDSKEPLSVMAPLGAA 97
Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157
L+G +G+ I+ P GE+ E+L++L+
Sbjct: 98 LLGMHVGNAITWQLPNGEEARIEVLELLY 126
>gi|163852771|ref|YP_001640814.1| transcription elongation factor GreA/GreB domain-containing protein
[Methylobacterium extorquens PA1]
gi|163664376|gb|ABY31743.1| transcription elongation factor GreA/GreB domain protein
[Methylobacterium extorquens PA1]
Length = 123
Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + R +++ D G+ V + ++G ++ +V EAD++ G +SI +P
Sbjct: 27 LSDELDRVQIVRGGAAQRDFARMGSRVDFRDNSTGRTQSVTLVYPGEADIEQGRISILTP 86
Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQV 155
I ALIG G I GE + +L+V
Sbjct: 87 IGAALIGLSEGQSIDWATRTGETRRLTVLEV 117
>gi|237797836|ref|ZP_04586297.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331020686|gb|EGI00743.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 132
Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 66 LENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L+ + RAE V+ + + + V E+ SG + ++V Q+A + G VS+ +
Sbjct: 34 LQAELDRAEQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAE-GTVSVLA 92
Query: 125 PIARALIGKELGDIISVNAPGGE 147
P+ AL+G ++G I APGG+
Sbjct: 93 PMGSALLGLQVGQHIDWPAPGGK 115
>gi|39995942|ref|NP_951893.1| nucleoside diphosphate kinase regulator protein [Geobacter
sulfurreducens PCA]
gi|39982706|gb|AAR34166.1| nucleoside diphosphate kinase regulator protein, putative
[Geobacter sulfurreducens PCA]
gi|298504957|gb|ADI83680.1| RNA polymerase-binding protein Rnk [Geobacter sulfurreducens KN400]
Length = 135
Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +LE+ + A ++D + + + + V L + + + +V +A++ G +SI
Sbjct: 31 LQKLEDELASAMIVDPKDVPPNVVTMNSRVKLRDLRADKEMTISLVFPNDANIAEGKISI 90
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPI A++G GD + + K I +VL+
Sbjct: 91 LSPIGTAILGFGAGDTLDLAVRSFAKKIRIEEVLY 125
>gi|123443968|ref|YP_001007938.1| nucleoside diphosphate kinase regulator [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122090929|emb|CAL13811.1| regulator of nucleoside diphosphate kinase [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 136
Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAE++ + + D + + V + NS ++ +V + +S+ +P+ A
Sbjct: 38 LDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 97
Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVLW 157
L+G + D IS PGG E +L++L+
Sbjct: 98 LLGLHVNDEISWKLPGGDEARITVLELLY 126
>gi|84386369|ref|ZP_00989397.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
gi|84378793|gb|EAP95648.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
Length = 56
Score = 34.7 bits (78), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
+T +G++K++ E E+RP I K ++ A + GD SENA+
Sbjct: 6 ITREGYNKLKAEHDHLWHEKRPEITKIVTWAASLGDRSENAD 47
>gi|262198442|ref|YP_003269651.1| GreA/GreB family elongation factor [Haliangium ochraceum DSM 14365]
gi|262081789|gb|ACY17758.1| GreA/GreB family elongation factor [Haliangium ochraceum DSM 14365]
Length = 163
Score = 34.7 bits (78), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+V+ +SPI RAL+G+ LG+I+ V G K + I V
Sbjct: 126 VVTPASPIGRALLGRRLGEIVDVTVRGEPKEWTITYV 162
>gi|326795231|ref|YP_004313051.1| transcription elongation factor GreA/GreB domain-containing protein
[Marinomonas mediterranea MMB-1]
gi|326545995|gb|ADZ91215.1| transcription elongation factor GreA/GreB domain-containing protein
[Marinomonas mediterranea MMB-1]
Length = 161
Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 94 LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
LV + G+K V Q AD+Q LVS+ SPI ++L+GK GD +V G E EI
Sbjct: 105 LVPRCGGNK-----VSVQAADIQ--LVSLDSPIGKSLMGKSEGDEFTVLRAGVEVYAEIS 157
Query: 154 QVLW 157
+ +
Sbjct: 158 DIHY 161
>gi|323967558|gb|EGB62974.1| hypothetical protein ERJG_01136 [Escherichia coli M863]
gi|327254294|gb|EGE65916.1| regulator of nucleoside diphosphate kinase [Escherichia coli
STEC_7v]
Length = 136
Score = 34.7 bits (78), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYSGLPIADALN----AELD----RAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 VATHLEVLEL 124
>gi|238789786|ref|ZP_04633568.1| Regulator of nucleoside diphosphate kinase [Yersinia frederiksenii
ATCC 33641]
gi|238722145|gb|EEQ13803.1| Regulator of nucleoside diphosphate kinase [Yersinia frederiksenii
ATCC 33641]
Length = 152
Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAE++ + + D + + V + NS ++ +V + +S+ +P+ A
Sbjct: 54 LDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 113
Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVLW 157
L+G + D IS PGG E +L++L+
Sbjct: 114 LLGLHVNDEISWKLPGGDEARITVLELLY 142
>gi|167624223|ref|YP_001674517.1| GreA/GreB family elongation factor [Shewanella halifaxensis
HAW-EB4]
gi|167354245|gb|ABZ76858.1| GreA/GreB family elongation factor [Shewanella halifaxensis
HAW-EB4]
Length = 165
Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG------ 118
+ + + TR + +S ++ G V L++ + K Y VG ++
Sbjct: 71 DFDALFTR--LSGVSETRAPKVGLGKLVELMDADG--KSQYLFVGPGAGGLKVTCDEYSV 126
Query: 119 -LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+V+++SP+ RA++ K GD S+ G + YEI+ V
Sbjct: 127 MIVTLASPLGRAMMSKLQGDEFSLQVAGSRRDYEIVMV 164
>gi|330447801|ref|ZP_08311449.1| prokaryotic transcription elongation factor, GreA /GreB, C-terminal
domain protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491992|dbj|GAA05946.1| prokaryotic transcription elongation factor, GreA /GreB, C-terminal
domain protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 160
Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 17/157 (10%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
D IQ++L Q ++A + A +++EN A E L G+ +E
Sbjct: 7 LDDIQEKLTLTLQAATEAAMRAYNTATDDENVAENQYDTLALEASYLAHGQAQRVEEC-- 64
Query: 72 RAEVIDISTM------SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL------ 119
+A+++ + S D + G V+LV++ D +G V L
Sbjct: 65 KADLMAYQKLQASLPQSFDSVLLGHIVTLVDEE--DNTRLVFLGPTAGGVVLTLEGKPVT 122
Query: 120 -VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
V+ +SP ALIG+E+G+ + V+ YE+L +
Sbjct: 123 IVTPTSPFGDALIGREIGEEVDVHIGNSVTWYEVLAI 159
>gi|157777579|gb|ABV69908.1| TRIM22 [Gorilla gorilla]
Length = 498
Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 16/94 (17%)
Query: 13 DKIQQE-LRWRQ--QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
D I+QE W+ Q+ER +I+K +E R D E +ELQ L EG + L+N+
Sbjct: 163 DDIRQERTAWKNYIQKERQKILKGFNEMRVILDNEEQ------RELQKLEEGEVNVLDNL 216
Query: 70 ITRAEVI-----DISTMSGD--RIAFGATVSLVE 96
+ + D ST+ D R G++V +++
Sbjct: 217 AAATDQLVQQRQDASTLISDLQRRLRGSSVEMLQ 250
>gi|229523094|ref|ZP_04412506.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TM
11079-80]
gi|229339944|gb|EEO04954.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TM
11079-80]
Length = 135
Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-VSISSPIARAL 130
RA V++ + M + + +TV K SG + + DV+S VSI +P+ AL
Sbjct: 40 RATVLEPAEMPDNVVTMNSTVRF--KFSGSDEVMEKTLVYPNDVKSSADVSIFAPVGSAL 97
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 98 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125
>gi|157157899|ref|YP_001461775.1| nucleoside diphosphate kinase regulator [Escherichia coli E24377A]
gi|157079929|gb|ABV19637.1| regulator of nucleoside diphosphate kinase [Escherichia coli
E24377A]
Length = 136
Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALN----AELD----RAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 VATHLEVLEL 124
>gi|66043448|ref|YP_233289.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
syringae B728a]
gi|63254155|gb|AAY35251.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
pv. syringae B728a]
gi|330970496|gb|EGH70562.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
aceris str. M302273PT]
gi|330983174|gb|EGH81277.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 135
Score = 34.7 bits (78), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ + V E+ SG + ++V Q+A G VS+ +P+ AL+G ++G I APG
Sbjct: 55 VTMNSRVHCREEVSGKDYHLKLVYPQDAGA-DGTVSVLAPMGSALLGLQIGQHIDWPAPG 113
Query: 146 GE 147
G+
Sbjct: 114 GK 115
>gi|116618081|ref|YP_818452.1| nucleotidyltransferase/DNA polymerase for DNA repair [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116096928|gb|ABJ62079.1| Nucleotidyltransferase/DNA polymerase for DNA repair [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 440
Score = 34.3 bits (77), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
D +F A+V VE+N K +V ++ + GLV SSP+A+ ++G
Sbjct: 23 DSKSFYASVECVERNYNPLKALLVVMSEQENTNGGLVLASSPMAKKILG 71
>gi|194432543|ref|ZP_03064829.1| regulator of nucleoside diphosphate kinase [Shigella dysenteriae
1012]
gi|194419104|gb|EDX35187.1| regulator of nucleoside diphosphate kinase [Shigella dysenteriae
1012]
gi|332096848|gb|EGJ01838.1| regulator of nucleoside diphosphate kinase [Shigella dysenteriae
155-74]
Length = 136
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALN----AELD----RAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 VATHLEVLEL 124
>gi|331676268|ref|ZP_08376980.1| regulator of nucleoside diphosphate kinase [Escherichia coli H591]
gi|331076326|gb|EGI47608.1| regulator of nucleoside diphosphate kinase [Escherichia coli H591]
Length = 136
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALN----AELD----RAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 VATHLEVLEL 124
>gi|283784385|ref|YP_003364250.1| regulator of nucleoside diphosphate kinase [Citrobacter rodentium
ICC168]
gi|282947839|emb|CBG87399.1| regulator of nucleoside diphosphate kinase [Citrobacter rodentium
ICC168]
Length = 136
Score = 34.3 bits (77), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA + TM D +
Sbjct: 3 RPPIIINDLDAERIDRLLEQPAYADLPIADALN----AELD----RARMCSPETMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAAMTDSNTQLSLMAPVGAALLGLRVGDTIHWQLPGG 114
Query: 147 EKTY-EILQV 155
+ E+L++
Sbjct: 115 VSAHLEVLEL 124
>gi|15800325|ref|NP_286337.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
EDL933]
gi|15829903|ref|NP_308676.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
str. Sakai]
gi|16128593|ref|NP_415143.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K-12 substr. MG1655]
gi|24111957|ref|NP_706467.1| nucleoside diphosphate kinase regulator [Shigella flexneri 2a str.
301]
gi|26246590|ref|NP_752629.1| nucleoside diphosphate kinase regulator [Escherichia coli CFT073]
gi|30062068|ref|NP_836239.1| nucleoside diphosphate kinase regulator [Shigella flexneri 2a str.
2457T]
gi|74311145|ref|YP_309564.1| nucleoside diphosphate kinase regulator [Shigella sonnei Ss046]
gi|82543058|ref|YP_407005.1| nucleoside diphosphate kinase regulator [Shigella boydii Sb227]
gi|89107477|ref|AP_001257.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K-12 substr. W3110]
gi|91209657|ref|YP_539643.1| nucleoside diphosphate kinase regulator [Escherichia coli UTI89]
gi|110640840|ref|YP_668568.1| nucleoside diphosphate kinase regulator [Escherichia coli 536]
gi|110804605|ref|YP_688125.1| nucleoside diphosphate kinase regulator [Shigella flexneri 5 str.
8401]
gi|117622830|ref|YP_851743.1| nucleoside diphosphate kinase regulator [Escherichia coli APEC O1]
gi|157160106|ref|YP_001457424.1| nucleoside diphosphate kinase regulator [Escherichia coli HS]
gi|168747719|ref|ZP_02772741.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4113]
gi|168754712|ref|ZP_02779719.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4401]
gi|168760240|ref|ZP_02785247.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4501]
gi|168770214|ref|ZP_02795221.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4486]
gi|168774674|ref|ZP_02799681.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4196]
gi|168779101|ref|ZP_02804108.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4076]
gi|168786458|ref|ZP_02811465.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC869]
gi|168798171|ref|ZP_02823178.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC508]
gi|170021031|ref|YP_001725985.1| nucleoside diphosphate kinase regulator [Escherichia coli ATCC
8739]
gi|170080191|ref|YP_001729511.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K-12 substr. DH10B]
gi|170080292|ref|YP_001729612.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K-12 substr. DH10B]
gi|170681529|ref|YP_001742727.1| nucleoside diphosphate kinase regulator [Escherichia coli SMS-3-5]
gi|187731796|ref|YP_001879282.1| nucleoside diphosphate kinase regulator [Shigella boydii CDC
3083-94]
gi|188493179|ref|ZP_03000449.1| regulator of nucleoside diphosphate kinase [Escherichia coli 53638]
gi|191167359|ref|ZP_03029175.1| regulator of nucleoside diphosphate kinase [Escherichia coli B7A]
gi|191172347|ref|ZP_03033889.1| regulator of nucleoside diphosphate kinase [Escherichia coli F11]
gi|193069033|ref|ZP_03049991.1| regulator of nucleoside diphosphate kinase [Escherichia coli
E110019]
gi|194427996|ref|ZP_03060541.1| regulator of nucleoside diphosphate kinase [Escherichia coli B171]
gi|194437440|ref|ZP_03069537.1| regulator of nucleoside diphosphate kinase [Escherichia coli 101-1]
gi|195936160|ref|ZP_03081542.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
str. EC4024]
gi|208809474|ref|ZP_03251811.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4206]
gi|208816344|ref|ZP_03257523.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4045]
gi|208822949|ref|ZP_03263267.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4042]
gi|209397427|ref|YP_002269245.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4115]
gi|209917869|ref|YP_002291953.1| nucleoside diphosphate kinase regulator [Escherichia coli SE11]
gi|215485652|ref|YP_002328083.1| nucleoside diphosphate kinase regulator [Escherichia coli O127:H6
str. E2348/69]
gi|217325093|ref|ZP_03441177.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. TW14588]
gi|218553153|ref|YP_002386066.1| nucleoside diphosphate kinase regulator [Escherichia coli IAI1]
gi|218557550|ref|YP_002390463.1| nucleoside diphosphate kinase regulator [Escherichia coli S88]
gi|218688434|ref|YP_002396646.1| nucleoside diphosphate kinase regulator [Escherichia coli ED1a]
gi|218694051|ref|YP_002401718.1| nucleoside diphosphate kinase regulator [Escherichia coli 55989]
gi|218698983|ref|YP_002406612.1| nucleoside diphosphate kinase regulator [Escherichia coli IAI39]
gi|218703944|ref|YP_002411463.1| nucleoside diphosphate kinase regulator [Escherichia coli UMN026]
gi|227884410|ref|ZP_04002215.1| nucleoside diphosphate kinase regulator [Escherichia coli 83972]
gi|237707417|ref|ZP_04537898.1| nucleoside diphosphate kinase regulator [Escherichia sp. 3_2_53FAA]
gi|238899889|ref|YP_002925685.1| regulator of nucleoside diphosphate kinase [Escherichia coli
BW2952]
gi|253774405|ref|YP_003037236.1| nucleoside diphosphate kinase regulator [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160691|ref|YP_003043799.1| nucleoside diphosphate kinase regulator [Escherichia coli B str.
REL606]
gi|254791777|ref|YP_003076614.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
str. TW14359]
gi|256020563|ref|ZP_05434428.1| nucleoside diphosphate kinase regulator [Shigella sp. D9]
gi|256023775|ref|ZP_05437640.1| nucleoside diphosphate kinase regulator [Escherichia sp. 4_1_40B]
gi|260853863|ref|YP_003227754.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
O26:H11 str. 11368]
gi|260866759|ref|YP_003233161.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
O111:H- str. 11128]
gi|261224078|ref|ZP_05938359.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. FRIK2000]
gi|261257772|ref|ZP_05950305.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
O157:H7 str. FRIK966]
gi|291281563|ref|YP_003498381.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O55:H7
str. CB9615]
gi|293403873|ref|ZP_06647867.1| nucleoside diphosphate kinase regulator [Escherichia coli FVEC1412]
gi|293408736|ref|ZP_06652575.1| kinase regulator [Escherichia coli B354]
gi|293413907|ref|ZP_06656556.1| kinase regulator protein [Escherichia coli B185]
gi|293418722|ref|ZP_06661157.1| hypothetical protein ECCG_03607 [Escherichia coli B088]
gi|298379649|ref|ZP_06989254.1| nucleoside diphosphate kinase regulator protein [Escherichia coli
FVEC1302]
gi|300817873|ref|ZP_07098087.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
107-1]
gi|300823077|ref|ZP_07103211.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
119-7]
gi|300901112|ref|ZP_07119222.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
198-1]
gi|300907782|ref|ZP_07125400.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
84-1]
gi|300920583|ref|ZP_07137004.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
115-1]
gi|300927295|ref|ZP_07143022.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
182-1]
gi|300931538|ref|ZP_07146854.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
187-1]
gi|300939638|ref|ZP_07154290.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
21-1]
gi|300951104|ref|ZP_07164971.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
116-1]
gi|300959172|ref|ZP_07171254.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
175-1]
gi|300990100|ref|ZP_07179112.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
45-1]
gi|300996806|ref|ZP_07181547.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
200-1]
gi|301025288|ref|ZP_07188852.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
69-1]
gi|301028918|ref|ZP_07192087.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
196-1]
gi|301302086|ref|ZP_07208219.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
124-1]
gi|301329123|ref|ZP_07222126.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
78-1]
gi|301643983|ref|ZP_07244006.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
146-1]
gi|306812957|ref|ZP_07447150.1| nucleoside diphosphate kinase regulator [Escherichia coli NC101]
gi|307137228|ref|ZP_07496584.1| nucleoside diphosphate kinase regulator [Escherichia coli H736]
gi|307312673|ref|ZP_07592305.1| GreA/GreB family elongation factor [Escherichia coli W]
gi|309795524|ref|ZP_07689941.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
145-7]
gi|312965055|ref|ZP_07779292.1| regulator of nucleoside diphosphate kinase [Escherichia coli
2362-75]
gi|312970688|ref|ZP_07784869.1| regulator of nucleoside diphosphate kinase [Escherichia coli
1827-70]
gi|331641111|ref|ZP_08342246.1| regulator of nucleoside diphosphate kinase [Escherichia coli H736]
gi|331645767|ref|ZP_08346870.1| regulator of nucleoside diphosphate kinase [Escherichia coli M605]
gi|331651619|ref|ZP_08352638.1| regulator of nucleoside diphosphate kinase [Escherichia coli M718]
gi|331656637|ref|ZP_08357599.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA206]
gi|331661974|ref|ZP_08362897.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA143]
gi|331666962|ref|ZP_08367836.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA271]
gi|331672151|ref|ZP_08372943.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA280]
gi|331682030|ref|ZP_08382654.1| regulator of nucleoside diphosphate kinase [Escherichia coli H299]
gi|332281747|ref|ZP_08394160.1| regulator of nucleoside diphosphate kinase [Shigella sp. D9]
gi|84028114|sp|P0AFW6|RNK_ECO57 RecName: Full=Regulator of nucleoside diphosphate kinase
gi|84028115|sp|P0AFW5|RNK_ECOL6 RecName: Full=Regulator of nucleoside diphosphate kinase
gi|84028116|sp|P0AFW4|RNK_ECOLI RecName: Full=Regulator of nucleoside diphosphate kinase
gi|84028117|sp|P0AFW7|RNK_SHIFL RecName: Full=Regulator of nucleoside diphosphate kinase
gi|210060903|pdb|3BMB|A Chain A, Crystal Structure Of A New Rna Polymerase Interacting
Protein
gi|210060904|pdb|3BMB|B Chain B, Crystal Structure Of A New Rna Polymerase Interacting
Protein
gi|12513506|gb|AAG54945.1|AE005240_11 regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EDL933]
gi|26106989|gb|AAN79173.1|AE016757_77 Regulator of nucleoside diphosphate kinase [Escherichia coli
CFT073]
gi|598118|gb|AAC36933.1| rnk [Escherichia coli]
gi|1651248|dbj|BAA35239.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K12 substr. W3110]
gi|1778527|gb|AAB40810.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
gi|1786827|gb|AAC73711.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K-12 substr. MG1655]
gi|13360107|dbj|BAB34072.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. Sakai]
gi|24050767|gb|AAN42174.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2a
str. 301]
gi|30040312|gb|AAP16045.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2a
str. 2457T]
gi|73854622|gb|AAZ87329.1| regulator of nucleoside diphosphate kinase [Shigella sonnei Ss046]
gi|81244469|gb|ABB65177.1| regulator of nucleoside diphosphate kinase [Shigella boydii Sb227]
gi|91071231|gb|ABE06112.1| regulator of nucleoside diphosphate kinase [Escherichia coli UTI89]
gi|110342432|gb|ABG68669.1| regulator of nucleoside diphosphate kinase [Escherichia coli 536]
gi|110614153|gb|ABF02820.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 5
str. 8401]
gi|115511954|gb|ABJ00029.1| regulator of nucleoside diphosphate kinase [Escherichia coli APEC
O1]
gi|157065786|gb|ABV05041.1| regulator of nucleoside diphosphate kinase [Escherichia coli HS]
gi|169755959|gb|ACA78658.1| GreA/GreB family elongation factor [Escherichia coli ATCC 8739]
gi|169888026|gb|ACB01733.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K-12 substr. DH10B]
gi|169888127|gb|ACB01834.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K-12 substr. DH10B]
gi|170519247|gb|ACB17425.1| regulator of nucleoside diphosphate kinase [Escherichia coli
SMS-3-5]
gi|187428788|gb|ACD08062.1| regulator of nucleoside diphosphate kinase [Shigella boydii CDC
3083-94]
gi|187769767|gb|EDU33611.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4196]
gi|188017705|gb|EDU55827.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4113]
gi|188488378|gb|EDU63481.1| regulator of nucleoside diphosphate kinase [Escherichia coli 53638]
gi|189002814|gb|EDU71800.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4076]
gi|189357941|gb|EDU76360.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4401]
gi|189360881|gb|EDU79300.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4486]
gi|189369200|gb|EDU87616.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4501]
gi|189373770|gb|EDU92186.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC869]
gi|189379372|gb|EDU97788.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC508]
gi|190902608|gb|EDV62341.1| regulator of nucleoside diphosphate kinase [Escherichia coli B7A]
gi|190907446|gb|EDV67043.1| regulator of nucleoside diphosphate kinase [Escherichia coli F11]
gi|192957577|gb|EDV88022.1| regulator of nucleoside diphosphate kinase [Escherichia coli
E110019]
gi|194413971|gb|EDX30248.1| regulator of nucleoside diphosphate kinase [Escherichia coli B171]
gi|194423609|gb|EDX39599.1| regulator of nucleoside diphosphate kinase [Escherichia coli 101-1]
gi|208729275|gb|EDZ78876.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4206]
gi|208732992|gb|EDZ81680.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4045]
gi|208737142|gb|EDZ84826.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4042]
gi|209158827|gb|ACI36260.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4115]
gi|209777348|gb|ACI86986.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
gi|209777350|gb|ACI86987.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
gi|209777352|gb|ACI86988.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
gi|209777354|gb|ACI86989.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
gi|209777356|gb|ACI86990.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
gi|209911128|dbj|BAG76202.1| regulator of nucleoside diphosphate kinase [Escherichia coli SE11]
gi|215263724|emb|CAS08059.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O127:H6 str. E2348/69]
gi|217321314|gb|EEC29738.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. TW14588]
gi|218350783|emb|CAU96475.1| regulator of nucleoside diphosphate kinase [Escherichia coli 55989]
gi|218359921|emb|CAQ97464.1| regulator of nucleoside diphosphate kinase [Escherichia coli IAI1]
gi|218364319|emb|CAR01992.1| regulator of nucleoside diphosphate kinase [Escherichia coli S88]
gi|218368969|emb|CAR16723.1| regulator of nucleoside diphosphate kinase [Escherichia coli IAI39]
gi|218425998|emb|CAR06815.1| regulator of nucleoside diphosphate kinase [Escherichia coli ED1a]
gi|218431041|emb|CAR11917.1| regulator of nucleoside diphosphate kinase [Escherichia coli
UMN026]
gi|222032371|emb|CAP75110.1| Regulator of nucleoside diphosphate kinase [Escherichia coli LF82]
gi|226898627|gb|EEH84886.1| nucleoside diphosphate kinase regulator [Escherichia sp. 3_2_53FAA]
gi|227838496|gb|EEJ48962.1| nucleoside diphosphate kinase regulator [Escherichia coli 83972]
gi|238863432|gb|ACR65430.1| regulator of nucleoside diphosphate kinase [Escherichia coli
BW2952]
gi|242376386|emb|CAQ31084.1| regulator of nucleoside diphosphate kinase [Escherichia coli
BL21(DE3)]
gi|253325449|gb|ACT30051.1| GreA/GreB family elongation factor [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972592|gb|ACT38263.1| nucleoside diphosphate kinase regulator [Escherichia coli B str.
REL606]
gi|253976786|gb|ACT42456.1| nucleoside diphosphate kinase regulator [Escherichia coli
BL21(DE3)]
gi|254591177|gb|ACT70538.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. TW14359]
gi|257752512|dbj|BAI24014.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
O26:H11 str. 11368]
gi|257763115|dbj|BAI34610.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
O111:H- str. 11128]
gi|260450221|gb|ACX40643.1| GreA/GreB family elongation factor [Escherichia coli DH1]
gi|281177760|dbj|BAI54090.1| regulator of nucleoside diphosphate kinase [Escherichia coli SE15]
gi|281599915|gb|ADA72899.1| Regulator of nucleoside diphosphate kinase [Shigella flexneri
2002017]
gi|284920411|emb|CBG33472.1| regulator of nucleoside diphosphate kinase [Escherichia coli 042]
gi|290761436|gb|ADD55397.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O55:H7
str. CB9615]
gi|291325250|gb|EFE64665.1| hypothetical protein ECCG_03607 [Escherichia coli B088]
gi|291428459|gb|EFF01484.1| nucleoside diphosphate kinase regulator [Escherichia coli FVEC1412]
gi|291433965|gb|EFF06938.1| kinase regulator protein [Escherichia coli B185]
gi|291471914|gb|EFF14397.1| kinase regulator [Escherichia coli B354]
gi|294491723|gb|ADE90479.1| regulator of nucleoside diphosphate kinase [Escherichia coli
IHE3034]
gi|298279347|gb|EFI20855.1| nucleoside diphosphate kinase regulator protein [Escherichia coli
FVEC1302]
gi|299878075|gb|EFI86286.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
196-1]
gi|300304408|gb|EFJ58928.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
200-1]
gi|300314248|gb|EFJ64032.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
175-1]
gi|300355468|gb|EFJ71338.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
198-1]
gi|300396083|gb|EFJ79621.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
69-1]
gi|300400545|gb|EFJ84083.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
84-1]
gi|300407175|gb|EFJ90713.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
45-1]
gi|300412422|gb|EFJ95732.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
115-1]
gi|300416713|gb|EFK00024.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
182-1]
gi|300449633|gb|EFK13253.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
116-1]
gi|300455463|gb|EFK18956.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
21-1]
gi|300460680|gb|EFK24173.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
187-1]
gi|300524426|gb|EFK45495.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
119-7]
gi|300529570|gb|EFK50632.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
107-1]
gi|300842638|gb|EFK70398.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
124-1]
gi|300844536|gb|EFK72296.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
78-1]
gi|301077633|gb|EFK92439.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
146-1]
gi|305853720|gb|EFM54159.1| nucleoside diphosphate kinase regulator [Escherichia coli NC101]
gi|306907375|gb|EFN37880.1| GreA/GreB family elongation factor [Escherichia coli W]
gi|307552481|gb|ADN45256.1| regulator of nucleoside diphosphate kinase [Escherichia coli ABU
83972]
gi|307627951|gb|ADN72255.1| nucleoside diphosphate kinase regulator [Escherichia coli UM146]
gi|308120899|gb|EFO58161.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
145-7]
gi|310337337|gb|EFQ02475.1| regulator of nucleoside diphosphate kinase [Escherichia coli
1827-70]
gi|312290146|gb|EFR18029.1| regulator of nucleoside diphosphate kinase [Escherichia coli
2362-75]
gi|312945158|gb|ADR25985.1| nucleoside diphosphate kinase regulator [Escherichia coli O83:H1
str. NRG 857C]
gi|313647021|gb|EFS11477.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2a
str. 2457T]
gi|315059866|gb|ADT74193.1| regulator of nucleoside diphosphate kinase [Escherichia coli W]
gi|315135277|dbj|BAJ42436.1| regulator of nucleoside diphosphate kinase [Escherichia coli DH1]
gi|315255090|gb|EFU35058.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
85-1]
gi|315287015|gb|EFU46430.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
110-3]
gi|315292113|gb|EFU51465.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
153-1]
gi|315299131|gb|EFU58385.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
16-3]
gi|315616473|gb|EFU97090.1| regulator of nucleoside diphosphate kinase [Escherichia coli 3431]
gi|320178397|gb|EFW53365.1| Regulator of nucleoside diphosphate kinase [Shigella boydii ATCC
9905]
gi|320185416|gb|EFW60186.1| Regulator of nucleoside diphosphate kinase [Shigella flexneri CDC
796-83]
gi|320193018|gb|EFW67658.1| Regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC1212]
gi|320194208|gb|EFW68840.1| Regulator of nucleoside diphosphate kinase [Escherichia coli
WV_060327]
gi|320198263|gb|EFW72867.1| Regulator of nucleoside diphosphate kinase [Escherichia coli
EC4100B]
gi|320638060|gb|EFX07824.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
str. G5101]
gi|320643466|gb|EFX12636.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H-
str. 493-89]
gi|320648801|gb|EFX17428.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H-
str. H 2687]
gi|320654387|gb|EFX22434.1| nucleoside diphosphate kinase regulator [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320660068|gb|EFX27598.1| nucleoside diphosphate kinase regulator [Escherichia coli O55:H7
str. USDA 5905]
gi|320664865|gb|EFX32000.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
str. LSU-61]
gi|323153670|gb|EFZ39918.1| regulator of nucleoside diphosphate kinase [Escherichia coli
EPECa14]
gi|323158937|gb|EFZ44948.1| regulator of nucleoside diphosphate kinase [Escherichia coli
E128010]
gi|323164059|gb|EFZ49867.1| regulator of nucleoside diphosphate kinase [Shigella sonnei 53G]
gi|323170735|gb|EFZ56385.1| regulator of nucleoside diphosphate kinase [Escherichia coli LT-68]
gi|323179914|gb|EFZ65471.1| regulator of nucleoside diphosphate kinase [Escherichia coli 1180]
gi|323184899|gb|EFZ70267.1| regulator of nucleoside diphosphate kinase [Escherichia coli 1357]
gi|323191248|gb|EFZ76512.1| regulator of nucleoside diphosphate kinase [Escherichia coli
RN587/1]
gi|323379570|gb|ADX51838.1| GreA/GreB family elongation factor [Escherichia coli KO11]
gi|323938372|gb|EGB34626.1| hypothetical protein ERCG_00408 [Escherichia coli E1520]
gi|323943025|gb|EGB39184.1| hypothetical protein ERDG_00362 [Escherichia coli E482]
gi|323945085|gb|EGB41147.1| hypothetical protein EREG_03269 [Escherichia coli H120]
gi|323952811|gb|EGB48679.1| hypothetical protein ERKG_00584 [Escherichia coli H252]
gi|323958369|gb|EGB54075.1| hypothetical protein ERLG_00359 [Escherichia coli H263]
gi|323963179|gb|EGB58747.1| hypothetical protein ERGG_00365 [Escherichia coli H489]
gi|323972149|gb|EGB67362.1| hypothetical protein ERHG_01878 [Escherichia coli TA007]
gi|323976407|gb|EGB71497.1| hypothetical protein ERFG_02843 [Escherichia coli TW10509]
gi|324006326|gb|EGB75545.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
57-2]
gi|324010532|gb|EGB79751.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
60-1]
gi|324016122|gb|EGB85341.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
117-3]
gi|324116685|gb|EGC10600.1| hypothetical protein ERBG_03361 [Escherichia coli E1167]
gi|326341362|gb|EGD65154.1| Regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. 1044]
gi|326345859|gb|EGD69598.1| Regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. 1125]
gi|330910372|gb|EGH38882.1| regulator of nucleoside diphosphate kinase [Escherichia coli AA86]
gi|331037909|gb|EGI10129.1| regulator of nucleoside diphosphate kinase [Escherichia coli H736]
gi|331044519|gb|EGI16646.1| regulator of nucleoside diphosphate kinase [Escherichia coli M605]
gi|331049897|gb|EGI21955.1| regulator of nucleoside diphosphate kinase [Escherichia coli M718]
gi|331054885|gb|EGI26894.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA206]
gi|331060396|gb|EGI32360.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA143]
gi|331066186|gb|EGI38070.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA271]
gi|331070618|gb|EGI41981.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA280]
gi|331080709|gb|EGI51883.1| regulator of nucleoside diphosphate kinase [Escherichia coli H299]
gi|332094282|gb|EGI99333.1| regulator of nucleoside diphosphate kinase [Shigella boydii
5216-82]
gi|332097740|gb|EGJ02714.1| regulator of nucleoside diphosphate kinase [Shigella boydii
3594-74]
gi|332104099|gb|EGJ07445.1| regulator of nucleoside diphosphate kinase [Shigella sp. D9]
gi|332341957|gb|AEE55291.1| regulator of nucleoside diphosphate kinase [Escherichia coli
UMNK88]
gi|332760859|gb|EGJ91147.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
4343-70]
gi|332761226|gb|EGJ91512.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
2747-71]
gi|332763907|gb|EGJ94145.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
K-671]
gi|332768128|gb|EGJ98313.1| prokaryotic transcription elongation factor GreA/GreB [Shigella
flexneri 2930-71]
gi|333007955|gb|EGK27431.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
K-218]
gi|333010014|gb|EGK29449.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
K-272]
gi|333020847|gb|EGK40107.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
K-227]
gi|333021406|gb|EGK40656.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
K-304]
Length = 136
Score = 34.3 bits (77), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALN----AELD----RAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 VATHLEVLEL 124
>gi|296110218|ref|YP_003620599.1| ImpB/MucB/SamB family protein [Leuconostoc kimchii IMSNU 11154]
gi|295831749|gb|ADG39630.1| ImpB/MucB/SamB family protein [Leuconostoc kimchii IMSNU 11154]
Length = 440
Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
D +F A+V VE+N K +V ++ + GLV SSP+A+ ++G
Sbjct: 23 DSKSFYASVECVERNYNPLKALLVVMSEQENTNGGLVLASSPMAKKILG 71
>gi|254773292|ref|ZP_05214808.1| nucleoside diphosphate kinase regulator [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 158
Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
++ SP+A+AL G++ GD ++ P GEK E++ V
Sbjct: 120 LTARSPLAQALAGRQPGDTVTYPTPQGEKQVELIAV 155
>gi|329888405|ref|ZP_08267003.1| regulator of nucleoside diphosphate kinase [Brevundimonas diminuta
ATCC 11568]
gi|328846961|gb|EGF96523.1| regulator of nucleoside diphosphate kinase [Brevundimonas diminuta
ATCC 11568]
Length = 136
Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
G L+ + RA+V + M + + + V+ +S + + Q+V ++AD+ +G V
Sbjct: 33 GPAGLLQQELDRAKVCEPKAMPKNVVTLNRWLQYVDDHSPEVRRVQLVLPKDADIDAGRV 92
Query: 121 SISSPIARALIGKELGDIISVNAP 144
SI S + LIG + G S+N P
Sbjct: 93 SILSYVGAGLIGLKEGQ--SINWP 114
>gi|146300052|ref|YP_001194643.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae
UW101]
gi|146154470|gb|ABQ05324.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae
UW101]
Length = 143
Score = 34.3 bits (77), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
D ++ V+ + N+ +K +VG ++ V +S+ S A++G ++GD+I A
Sbjct: 68 DVVSVNRKVTYKDHNTNQEKTILLVGPEKVKVSKNKISVLSDEGIAMVGYKVGDLIEWPA 127
Query: 144 PGGEKTYEILQV 155
G EIL+V
Sbjct: 128 KKGHLKLEILKV 139
>gi|41406335|ref|NP_959171.1| nucleoside diphosphate kinase regulator [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41394683|gb|AAS02554.1| hypothetical protein MAP_0237c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 158
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
++ SP+A+AL G++ GD ++ P GEK E++ V
Sbjct: 120 LTARSPLAQALAGRQPGDTVTYPTPQGEKQVELIAV 155
>gi|330952175|gb|EGH52435.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae Cit
7]
Length = 135
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ + V E+ SG + ++V Q+A G VS+ +P+ AL+G ++G I APG
Sbjct: 55 VTMNSRVHCREEVSGKDYHLKLVYPQDAGA-DGTVSVLAPMGSALLGLQIGQHIDWPAPG 113
Query: 146 GE 147
G+
Sbjct: 114 GK 115
>gi|302189437|ref|ZP_07266110.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
syringae 642]
gi|330941155|gb|EGH44034.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 135
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ + V E+ SG + ++V Q+A G VS+ +P+ AL+G ++G I APG
Sbjct: 55 VTMNSRVHCREEVSGKDYHLKLVYPQDAGA-DGTVSVLAPMGSALLGLQIGQHIDWPAPG 113
Query: 146 GE 147
G+
Sbjct: 114 GK 115
>gi|118466969|ref|YP_879527.1| nucleoside diphosphate kinase regulator [Mycobacterium avium 104]
gi|118168256|gb|ABK69153.1| nucleoside diphosphate kinase regulator [Mycobacterium avium 104]
Length = 158
Score = 34.3 bits (77), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
++ SP+A+AL G++ GD ++ P GEK E++ V
Sbjct: 120 LTARSPLAQALAGRQPGDTVTYPTPQGEKQVELIAV 155
>gi|332308302|ref|YP_004436153.1| GreA/GreB family elongation factor [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175631|gb|AEE24885.1| GreA/GreB family elongation factor [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 126
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 41 GDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
DL+E EYQ E L + +EN + RA ++ + + +A G+ V+ +S
Sbjct: 10 ADLAE-LEYQL--ERAKLPADTVRAIENELDRASIVACKDLPENVVAIGSKVTFKILDSQ 66
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ + +S+ +PI ALIG G I+ GE++ EI+ V
Sbjct: 67 KIFTKTLCLPHDTIKYEDSISVFAPIGSALIGLSTGQCITWQTQRGEQSVEIINV 121
>gi|261344908|ref|ZP_05972552.1| regulator of nucleoside diphosphate kinase [Providencia rustigianii
DSM 4541]
gi|282567048|gb|EFB72583.1| regulator of nucleoside diphosphate kinase [Providencia rustigianii
DSM 4541]
Length = 136
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
+P II +A L E Y + LN+ EL+ RA+++ + D +
Sbjct: 3 KPTIIINDLDAERLDALMEQPAYAGTPVAEALND----ELD----RADIVSPQEIPADVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+T+ ++ S +++ +V + +S+ +PI AL+G + D IS P G
Sbjct: 55 TMNSTIRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWALPNG 114
Query: 147 EKT-YEILQVLW 157
+T +L++++
Sbjct: 115 VETRVRVLEIVY 126
>gi|15601365|ref|NP_232996.1| nucleoside diphosphate kinase regulator [Vibrio cholerae O1 biovar
eltor str. N16961]
gi|121587466|ref|ZP_01677234.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae
2740-80]
gi|121725791|ref|ZP_01679091.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae V52]
gi|147672055|ref|YP_001215388.1| nucleoside diphosphate kinase regulator [Vibrio cholerae O395]
gi|153817965|ref|ZP_01970632.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae NCTC
8457]
gi|153830764|ref|ZP_01983431.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 623-39]
gi|227812174|ref|YP_002812184.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae M66-2]
gi|229506224|ref|ZP_04395733.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae BX
330286]
gi|229509917|ref|ZP_04399397.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae B33]
gi|229516522|ref|ZP_04405969.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC9]
gi|229525966|ref|ZP_04415370.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae bv.
albensis VL426]
gi|229528560|ref|ZP_04417951.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae
12129(1)]
gi|229605764|ref|YP_002876468.1| nucleoside diphosphate kinase regulator [Vibrio cholerae MJ-1236]
gi|254849767|ref|ZP_05239117.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MO10]
gi|255746617|ref|ZP_05420564.1| regulator of nucleoside diphosphate kinase [Vibrio cholera CIRS
101]
gi|262158791|ref|ZP_06029904.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae INDRE
91/1]
gi|262168458|ref|ZP_06036154.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC27]
gi|298499416|ref|ZP_07009222.1| nucleoside diphosphate kinase regulator [Vibrio cholerae MAK 757]
gi|9658019|gb|AAF96508.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121548301|gb|EAX58367.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae
2740-80]
gi|121631556|gb|EAX63924.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae V52]
gi|126511503|gb|EAZ74097.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae NCTC
8457]
gi|146314438|gb|ABQ18978.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae O395]
gi|148873748|gb|EDL71883.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 623-39]
gi|227011316|gb|ACP07527.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae M66-2]
gi|227015333|gb|ACP11542.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae O395]
gi|229334922|gb|EEO00408.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae
12129(1)]
gi|229336124|gb|EEO01142.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae bv.
albensis VL426]
gi|229346403|gb|EEO11374.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC9]
gi|229352362|gb|EEO17302.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae B33]
gi|229356575|gb|EEO21493.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae BX
330286]
gi|229372250|gb|ACQ62672.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae
MJ-1236]
gi|254845472|gb|EET23886.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MO10]
gi|255736371|gb|EET91769.1| regulator of nucleoside diphosphate kinase [Vibrio cholera CIRS
101]
gi|262022987|gb|EEY41692.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC27]
gi|262029364|gb|EEY48015.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae INDRE
91/1]
gi|297541397|gb|EFH77448.1| nucleoside diphosphate kinase regulator [Vibrio cholerae MAK 757]
gi|327485632|gb|AEA80038.1| Regulator of nucleoside diphosphate kinase [Vibrio cholerae
LMA3894-4]
Length = 135
Score = 34.3 bits (77), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-VSISSPIARAL 130
RA V++ + M D + +TV S + +V DV+S VSI +P+ AL
Sbjct: 40 RATVLEPAEMPEDVVTMNSTVRFKFLGSDEVMEKTLV--YPNDVKSSADVSIFAPVGSAL 97
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 98 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125
>gi|333007715|gb|EGK27192.1| regulator of nucleoside diphosphate kinase [Shigella flexneri VA-6]
Length = 136
Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALN----AELD----RAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLRDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 VATHLEVLEL 124
>gi|260564705|ref|ZP_05835190.1| LOW QUALITY PROTEIN: prokaryotic transcription elongation factor
GreA/GreB [Brucella melitensis bv. 1 str. 16M]
gi|265989928|ref|ZP_06102485.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator
[Brucella melitensis bv. 1 str. Rev.1]
gi|265992967|ref|ZP_06105524.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator
[Brucella melitensis bv. 3 str. Ether]
gi|260152348|gb|EEW87441.1| LOW QUALITY PROTEIN: prokaryotic transcription elongation factor
GreA/GreB [Brucella melitensis bv. 1 str. 16M]
gi|262763837|gb|EEZ09869.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator
[Brucella melitensis bv. 3 str. Ether]
gi|263000597|gb|EEZ13287.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator
[Brucella melitensis bv. 1 str. Rev.1]
Length = 113
Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
R A G+TV N G ++ +V EAD+ +SI +PI ALIG G IS A
Sbjct: 2 RRADGSTVEF-RANDGHERRVTLVYPGEADIAKNRISILTPIGTALIGLAPGQSISWTAR 60
Query: 145 GGEKT-YEILQVL 156
G++ +L+V+
Sbjct: 61 DGKQHELNVLKVM 73
>gi|330900741|gb|EGH32160.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 123
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ + V E+ SG + ++V Q+A G VS+ +P+ AL+G ++G I APG
Sbjct: 55 VTMNSRVHCREEVSGKDYHLKLVYPQDAGA-DGTVSVLAPMGSALLGLQIGQHIDWPAPG 113
Query: 146 GE 147
G+
Sbjct: 114 GK 115
>gi|300724985|ref|YP_003714310.1| regulator of nucleoside diphosphate kinase [Xenorhabdus nematophila
ATCC 19061]
gi|297631527|emb|CBJ92234.1| regulator of nucleoside diphosphate kinase [Xenorhabdus nematophila
ATCC 19061]
Length = 136
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
N G L + RAE++ + D + + + ++ S +++ +V +
Sbjct: 27 NTGIADALNEELDRAEILPPVDIPADVVTMNSEIRFIDLGSNEERVRTLVYPASLQDSTK 86
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+S+ +P+ AL+G + I+ P GE+T ++L++L+
Sbjct: 87 QLSVMAPLGAALLGLRVNGEITCQLPNGEETRIKVLEILY 126
>gi|325271635|ref|ZP_08138137.1| nucleoside diphosphate kinase regulator [Pseudomonas sp. TJI-51]
gi|324103239|gb|EGC00584.1| nucleoside diphosphate kinase regulator [Pseudomonas sp. TJI-51]
Length = 136
Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
L G A E + A+V+ + + + V E+ SG + +V ++A
Sbjct: 24 LDESTPGVFALQEELDRAAQVVGHEEVPAGVVTMNSRVHCREEASGKDYHLTLVYPKDAG 83
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ G VS+ +PI AL+G +G+ I APGG+
Sbjct: 84 AE-GKVSVLAPIGCALLGLSVGEQIDWPAPGGK 115
>gi|212635479|ref|YP_002312004.1| transcription elongation factor [Shewanella piezotolerans WP3]
gi|212556963|gb|ACJ29417.1| Transcription elongation factor [Shewanella piezotolerans WP3]
Length = 190
Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
L++ SPI L+ +E+GD +S+N G YEI+ +
Sbjct: 153 LITPQSPIGEKLMSREVGDEVSINVAGKRHHYEIVGI 189
>gi|254429947|ref|ZP_05043654.1| hypothetical protein ADG881_3177 [Alcanivorax sp. DG881]
gi|196196116|gb|EDX91075.1| hypothetical protein ADG881_3177 [Alcanivorax sp. DG881]
Length = 131
Score = 34.3 bits (77), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + RA V+ M D + + + E+ G + + +V Q+ + VSI +P
Sbjct: 31 LEEELLRATVVAPEAMPADVVTMNSRIRCREQARGREMSLTLVYPQDNGPER--VSILAP 88
Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQV 155
+ AL+G +G I AP G+ EIL V
Sbjct: 89 VGAALLGLSVGQSIDWPAPNGKILKLEILAV 119
>gi|290476785|ref|YP_003469696.1| regulator of nucleoside diphosphate kinase [Xenorhabdus bovienii
SS-2004]
gi|289176129|emb|CBJ82934.1| regulator of nucleoside diphosphate kinase [Xenorhabdus bovienii
SS-2004]
Length = 136
Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAE++ + D + + + ++ S +++ +V + +S+ +P+ A
Sbjct: 38 LDRAEIVPPVEIPPDVVTMNSEIRFIDLGSNEERVRTLVYPASLQDSTKHLSVMAPLGAA 97
Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157
L+G + D I+ P EKT ++L++++
Sbjct: 98 LLGLRVNDEITWQLPNSEKTRIKVLEIIY 126
>gi|28899114|ref|NP_798719.1| hypothetical protein VP2341 [Vibrio parahaemolyticus RIMD 2210633]
gi|28807338|dbj|BAC60603.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
Length = 185
Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 25/154 (16%)
Query: 22 RQQEERPRII-----KAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73
Q EE+ RI +AI A + E+ A E L G R+ E E+ + +
Sbjct: 38 HQLEEKLRIAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEDELRQY 97
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-----------DQEADVQSGLVSI 122
+ I + I GA V LV++N+ +K+ + +G DQE V ++
Sbjct: 98 RSMVIRDFTDAPIGVGAYVVLVDENNIEKRFF--IGPCSGGLTVAWQDQEVFV----LTA 151
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ RAL+GKE G+ + YE++ V
Sbjct: 152 KSPLGRALLGKEEGEEFEMKIGDKTTCYEVVTVF 185
>gi|26991899|ref|NP_747324.1| nucleoside diphosphate kinase regulator [Pseudomonas putida KT2440]
gi|148550332|ref|YP_001270434.1| nucleoside diphosphate kinase regulator [Pseudomonas putida F1]
gi|24987021|gb|AAN70788.1|AE016722_9 nucleoside diphosphate kinase regulator [Pseudomonas putida KT2440]
gi|148514390|gb|ABQ81250.1| GreA/GreB family elongation factor [Pseudomonas putida F1]
gi|313501200|gb|ADR62566.1| Rnk [Pseudomonas putida BIRD-1]
Length = 136
Score = 33.9 bits (76), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 66 LENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L++ + RAE V+ + + + V E+ SG + +V ++A + G VSI +
Sbjct: 34 LQDELDRAEQVVGHEEVPAGVVTMNSRVHCREEASGKDYHLTLVYPKDAGPE-GKVSILA 92
Query: 125 PIARALIGKELGDIISVNAPGGE 147
PI AL+G +G+ I APGG+
Sbjct: 93 PIGCALLGLSVGEQIDWPAPGGK 115
>gi|257482604|ref|ZP_05636645.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|330892779|gb|EGH25440.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
mori str. 301020]
gi|330984809|gb|EGH82912.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012755|gb|EGH92811.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 135
Score = 33.9 bits (76), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ + V E+ SG + ++V Q+A G VS+ +P+ AL+G ++G I APG
Sbjct: 55 VTMNSRVHCREEVSGKDYHLKLVYPQDAGA-DGTVSVLAPMGSALLGLQVGQHIDWPAPG 113
Query: 146 GE 147
G+
Sbjct: 114 GK 115
>gi|327481647|gb|AEA84957.1| transcription elongation factor [Pseudomonas stutzeri DSM 4166]
Length = 158
Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD------QEADV 115
R+ E+E + + S R+ GA + L + G ++ + + D Q
Sbjct: 60 RLHEIETALAAYRNLQAGVSSDGRVRVGALLCL--DHDGAERWFFLGPDAAGLKLQHDGR 117
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ +++ SP+ + L+G+E+GD + + G + YE+LQ+
Sbjct: 118 EILVITARSPLGQGLLGREVGDEVELRVHGQLQRYEVLQI 157
>gi|227487834|ref|ZP_03918150.1| transcription elongation factor GreA [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227542474|ref|ZP_03972523.1| transcription elongation factor GreA [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227092161|gb|EEI27473.1| transcription elongation factor GreA [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227181672|gb|EEI62644.1| transcription elongation factor GreA [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 180
Score = 33.9 bits (76), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V K +T + +++EL+ + RP I I+E R GDL ENA Y AA++ Q E
Sbjct: 4 VQKTYITPESKAALERELKALI-DNRPAIAAEINERREEGDLKENAGYDAARDQQAQEES 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ + + G+ G+ V + + DK+ + I A L
Sbjct: 63 RIREIEEMLKNSTTERTALKEGE-AQVGSVVHVYYNDDENDKETFLIGTRATASDNPDLE 121
Query: 121 SIS--SPIARALIGKELGDIISVNAPGG 146
+ S SP+ A++G G+ AP G
Sbjct: 122 TYSELSPLGAAVLGATEGETRQYTAPNG 149
>gi|104784263|ref|YP_610761.1| nucleoside diphosphate kinase regulator [Pseudomonas entomophila
L48]
gi|95113250|emb|CAK17978.1| regulator of nucleoside diphosphate kinase [Pseudomonas entomophila
L48]
Length = 136
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 66 LENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L++ + RAE V+ + + + V E SG + +V ++A + G VSI +
Sbjct: 34 LQDELDRAEQVVGHEEVPAGVVTMNSRVHCREIASGKDYHLTLVYPKDAGPE-GNVSILA 92
Query: 125 PIARALIGKELGDIISVNAPGGEKT-YEILQV 155
PI AL+G +GD I APGG+ E+L V
Sbjct: 93 PIGCALLGLSVGDQIDWPAPGGKTLKLELLAV 124
>gi|153836776|ref|ZP_01989443.1| transcription elongation factor [Vibrio parahaemolyticus AQ3810]
gi|260895902|ref|ZP_05904398.1| transcription elongation factor [Vibrio parahaemolyticus Peru-466]
gi|308094401|ref|ZP_07662909.1| transcription elongation factor [Vibrio parahaemolyticus AN-5034]
gi|308125781|ref|ZP_05777348.2| transcription elongation factor [Vibrio parahaemolyticus K5030]
gi|308126243|ref|ZP_05908759.2| transcription elongation factor [Vibrio parahaemolyticus AQ4037]
gi|149749922|gb|EDM60667.1| transcription elongation factor [Vibrio parahaemolyticus AQ3810]
gi|308089372|gb|EFO39067.1| transcription elongation factor [Vibrio parahaemolyticus Peru-466]
gi|308091428|gb|EFO41123.1| transcription elongation factor [Vibrio parahaemolyticus AN-5034]
gi|308108568|gb|EFO46108.1| transcription elongation factor [Vibrio parahaemolyticus AQ4037]
gi|308115313|gb|EFO52853.1| transcription elongation factor [Vibrio parahaemolyticus K5030]
Length = 159
Score = 33.9 bits (76), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 25/154 (16%)
Query: 22 RQQEERPRII-----KAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73
Q EE+ RI +AI A + E+ A E L G R+ E E+ + +
Sbjct: 12 HQLEEKLRIAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEDELRQY 71
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-----------DQEADVQSGLVSI 122
+ I + I GA V LV++N+ +K+ + +G DQE V ++
Sbjct: 72 RSMVIRDFTDAPIGVGAYVVLVDENNIEKRFF--IGPCSGGLTVAWQDQEVFV----LTA 125
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ RAL+GKE G+ + YE++ V
Sbjct: 126 KSPLGRALLGKEEGEEFEMKIGDKTTCYEVVTVF 159
>gi|320326558|gb|EFW82609.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
glycinea str. B076]
gi|320331376|gb|EFW87317.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330881316|gb|EGH15465.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 144
Score = 33.9 bits (76), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 56 QNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
Q+ N + L+ + RA+ V+ + + + V E+ SG + ++V Q+A
Sbjct: 33 QDENTPGIQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 92
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
G VS+ +P+ AL+G +G I APGG+
Sbjct: 93 A-DGTVSVLAPMGSALLGLHVGQHIDWPAPGGK 124
>gi|329903488|ref|ZP_08273505.1| outer membrane autotransporter [Oxalobacteraceae bacterium IMCC9480]
gi|327548330|gb|EGF33017.1| outer membrane autotransporter [Oxalobacteraceae bacterium IMCC9480]
Length = 1431
Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 8/103 (7%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P++ A+ +A A GD + A L+N + ++ + I R D++ I
Sbjct: 1208 PQLASALPDAMAIGDAFSSQLGYAVTRLENPTKAQIMQALRRIAR----DMAPADSVVIY 1263
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
F +VEK + Y I D ADV SG +S ++ ++RAL
Sbjct: 1264 FAGHGDMVEKTG---EGYWIPSDARADVPSGWIS-NADVSRAL 1302
>gi|254562838|ref|YP_003069933.1| transcription elongation factor GreA-related [Methylobacterium
extorquens DM4]
gi|254270116|emb|CAX26106.1| putative transcription elongation factor GreA-related
[Methylobacterium extorquens DM4]
Length = 75
Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%)
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
G+ V + ++G ++ +V EAD++ G VSI +PI ALIG G I GE
Sbjct: 1 MGSRVDFRDNSTGRMQSVTLVYPGEADIEQGKVSILTPIGAALIGLSKGQSIDWATRTGE 60
>gi|71736881|ref|YP_277097.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71557434|gb|AAZ36645.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
pv. phaseolicola 1448A]
Length = 135
Score = 33.9 bits (76), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ + V E+ SG + ++V Q+A G VS+ +P+ AL+G +G I APG
Sbjct: 55 VTMNSRVHCREEVSGKDYHLKLVYPQDAGA-DGTVSVLAPMGSALLGLHVGQHIDWPAPG 113
Query: 146 GE 147
G+
Sbjct: 114 GK 115
>gi|322834683|ref|YP_004214710.1| GreA/GreB family elongation factor [Rahnella sp. Y9602]
gi|321169884|gb|ADW75583.1| GreA/GreB family elongation factor [Rahnella sp. Y9602]
Length = 136
Score = 33.9 bits (76), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAE++ + D + + V E G++ +V +S+ +P+ A
Sbjct: 38 LDRAEILPPEQIPADVVTMNSKVRFTEGKDGEEHIRTLVYPAALKDSKEQLSVMAPLGAA 97
Query: 130 LIGKELGDIISVNAPGGEKT-YEILQVLW 157
L+G G I+ P GE + E+L++L+
Sbjct: 98 LLGLRTGGSITWEMPNGENSRIEVLELLY 126
>gi|332163116|ref|YP_004299693.1| nucleoside diphosphate kinase regulator [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|318604001|emb|CBY25499.1| regulator of nucleoside diphosphate kinase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325667346|gb|ADZ43990.1| nucleoside diphosphate kinase regulator [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862799|emb|CBX72941.1| regulator of nucleoside diphosphate kinase [Yersinia enterocolitica
W22703]
Length = 136
Score = 33.9 bits (76), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAE++ + + D + + V + NS ++ +V + +S+ +P+ A
Sbjct: 38 LDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAA 97
Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVLW 157
L+G + D IS PGG E +L++L+
Sbjct: 98 LLGLHVNDEISWKLPGGDEARIIVLELLY 126
>gi|255614355|ref|XP_002539587.1| Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus
communis]
gi|223504659|gb|EEF22796.1| Enoyl-CoA hydratase, mitochondrial precursor, putative [Ricinus
communis]
Length = 243
Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE--GRMA 64
V+ FD + LR E R R+++ RA GD+ +A ++ ++ R+
Sbjct: 32 VSGAMFDAMSAALRSEAVEPRARVLRL----RANGDVFCTGRERAGRDAVSIRAEVARLI 87
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLV 95
EL+ ++ +I ++ + GD FG ++++
Sbjct: 88 ELKRLLRNTSLISLAQVHGDAFGFGFGLAIL 118
>gi|298209251|ref|YP_003717430.1| GreA/GreB family elongation factor [Croceibacter atlanticus
HTCC2559]
gi|83849178|gb|EAP87047.1| GreA/GreB family elongation factor [Croceibacter atlanticus
HTCC2559]
Length = 139
Score = 33.5 bits (75), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 40 YGDLS-ENAEYQAAKELQNLN--------EGRMAELENIITRAEVIDISTMSGDRIAFGA 90
YG L E EY K + N++ + + L + + A+++D + D I F +
Sbjct: 3 YGSLIIEKKEYVLLKRILNISSYAKDFDTQRAIKCLNDNLKNAQILDEEDVPTDVIRFNS 62
Query: 91 TVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY 150
+ LVE N KK+ +V +++ +S+ +P+ L G GD++ G +
Sbjct: 63 NI-LVEFNENLKKHLHLVIPASKNIKEDKISVITPLGALLFGCAEGDVLHEKLGSGIQHL 121
Query: 151 EILQVL 156
+I +V+
Sbjct: 122 QIKKVI 127
>gi|156975529|ref|YP_001446436.1| hypothetical protein VIBHAR_03261 [Vibrio harveyi ATCC BAA-1116]
gi|156527123|gb|ABU72209.1| hypothetical protein VIBHAR_03261 [Vibrio harveyi ATCC BAA-1116]
Length = 159
Score = 33.5 bits (75), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 85 RIAFGATVSLVEKNSGDKKNY--QIVGDQEADVQSGLVSI---SSPIARALIGKELGDII 139
RIA GA V LV++N +K + G + Q V + SP+ AL+GKE G+ I
Sbjct: 83 RIAVGAYVELVDENDVEKAFFIGPCSGGLTVEWQGKEVFVLTPKSPLGCALVGKEEGEDI 142
Query: 140 SVNAPGGEKTYEILQVL 156
V YE++ V
Sbjct: 143 DVKIGDKTTCYEVVTVC 159
>gi|269960572|ref|ZP_06174944.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834649|gb|EEZ88736.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 159
Score = 33.5 bits (75), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 85 RIAFGATVSLVEKNSGDKKNY--QIVGDQEADVQSGLVSI---SSPIARALIGKELGDII 139
RIA GA V LV++N +K + G + Q V + SP+ RAL+GKE G+ +
Sbjct: 83 RIAVGAYVELVDENDVEKAFFIGPCSGGLTVEWQGKEVFVLTPKSPLGRALMGKEEGEEV 142
Query: 140 SVNAPGGEKTYEILQVL 156
+ YE++ +
Sbjct: 143 EMKIGDKTTCYEVVTIC 159
>gi|170767795|ref|ZP_02902248.1| regulator of nucleoside diphosphate kinase [Escherichia albertii
TW07627]
gi|170123283|gb|EDS92214.1| regulator of nucleoside diphosphate kinase [Escherichia albertii
TW07627]
Length = 136
Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN AEL+ RA++ M + +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALN----AELD----RAQMCSPEEMPHNVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMDPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKTY-EILQV 155
T+ E+L++
Sbjct: 115 TATHLEVLEL 124
>gi|126464873|ref|YP_001041849.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides
ATCC 17029]
gi|126106688|gb|ABN79213.1| GreA/GreB family elongation factor [Rhodobacter sphaeroides ATCC
17029]
Length = 137
Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 53 KELQNLNEGRMAELENI-------ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY 105
+ L L +A L ++ +T A ++ + +S D + G+ V + +
Sbjct: 18 ERLDTLAGAAIARLPDVAYPLITKLTSARLLAPARLSSDVVTIGSEVLYHDDQGARDRRV 77
Query: 106 QIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155
+ ++AD+ VSI +P+ AL+G GD GE ++ +LQV
Sbjct: 78 TLSWPEDADISRRSVSILTPVGVALLGLSAGDRFQWQTRAGERRSLTVLQV 128
>gi|309700850|emb|CBJ00147.1| regulator of nucleoside diphosphate kinase [Escherichia coli ETEC
H10407]
Length = 136
Score = 33.5 bits (75), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA++ M D + + V + G+ + +V + + +S+ +P+ A
Sbjct: 38 LDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAA 97
Query: 130 LIGKELGDIISVNAPGGEKTY-EILQV 155
L+G +GD I PGG T+ E+L++
Sbjct: 98 LLGLRVGDSIHWELPGGVATHLEVLEL 124
>gi|258626677|ref|ZP_05721502.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM603]
gi|258581028|gb|EEW05952.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM603]
Length = 136
Score = 33.5 bits (75), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-VSISSPIARAL 130
RA V++ M + + +TV K SG + + DV+S VSI +P+ AL
Sbjct: 41 RATVLEPEEMPENVVTMNSTVRF--KFSGSDEVMEKTLVYPNDVKSSADVSIFAPVGSAL 98
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 99 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 126
>gi|8778326|gb|AAF79335.1|AC002304_28 F14J16.21 [Arabidopsis thaliana]
Length = 735
Score = 33.5 bits (75), Expect = 9.8, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
+ R +A S+ YGD E Y+ KE +NE R EL + A STM+ +
Sbjct: 457 KERREEATSDDSKYGDFMETMIYEVEKEGDTINEERSVELILSLLIASYETTSTMTALTV 516
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
F A V K+ ++ + AD +SG+
Sbjct: 517 KFIAENPKVLMEL--KREHETILQNRADKESGV 547
>gi|258622671|ref|ZP_05717691.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM573]
gi|258585048|gb|EEW09777.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM573]
Length = 136
Score = 33.5 bits (75), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-VSISSPIARAL 130
RA V++ M + + +TV K SG + + DV+S VSI +P+ AL
Sbjct: 41 RATVLEPEEMPENVVTMNSTVRF--KFSGSDEVMEKTLVYPNDVKSSADVSIFAPVGSAL 98
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 99 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 126
Searching..................................................done
Results from round 2
>gi|227822120|ref|YP_002826091.1| transcription elongation factor GreA [Sinorhizobium fredii NGR234]
gi|227341120|gb|ACP25338.1| transcription elongation factor GreA [Sinorhizobium fredii NGR234]
Length = 255
Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats.
Identities = 111/157 (70%), Positives = 135/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDK+P+T GF +Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 98 MVDKVPMTQGGFANLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 157
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++I RAEVID+S MSG +I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 158 GRVSELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKAGRI 217
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEIL V W
Sbjct: 218 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW 254
>gi|110680576|ref|YP_683583.1| transcription elongation factor GreA [Roseobacter denitrificans OCh
114]
gi|109456692|gb|ABG32897.1| transcription elongation factor GreA [Roseobacter denitrificans OCh
114]
Length = 312
Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats.
Identities = 84/156 (53%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T KG ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EG
Sbjct: 157 MDKIPMTRKGHSDLEAELKNLKSVERPAIISAIAEAREHGDLSENAEYHSAREKHSFIEG 216
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE ++ AEVID S MSG I FGATV+LV++++ ++K +QIVG+ EA+V+ GL++
Sbjct: 217 RIKELEGVLGLAEVIDPSKMSG-AIKFGATVTLVDEDTDEEKTWQIVGEHEANVEKGLLN 275
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGK+ GD + V PGG+K YE+L++++
Sbjct: 276 IKSPIARALIGKDEGDSVEVRTPGGQKAYEVLKIVY 311
>gi|315122111|ref|YP_004062600.1| transcription elongation factor GreA [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495513|gb|ADR52112.1| transcription elongation factor GreA [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 158
Score = 195 bits (495), Expect = 3e-48, Method: Composition-based stats.
Identities = 141/158 (89%), Positives = 151/158 (95%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEAR+YGDLSENAEYQAAKELQ++NE
Sbjct: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARSYGDLSENAEYQAAKELQSMNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELENI T AEVIDIS MSG ++AFGATVSLV++ SGDKKNYQIVGDQEADVQSGLV
Sbjct: 61 GRIAELENITTCAEVIDISKMSGSKVAFGATVSLVDETSGDKKNYQIVGDQEADVQSGLV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGKELGD +SVNAPGG+K YEILQVLWI
Sbjct: 121 SISSPIARALIGKELGDTVSVNAPGGQKNYEILQVLWI 158
>gi|296445401|ref|ZP_06887359.1| GreA/GreB family elongation factor [Methylosinus trichosporium
OB3b]
gi|296257162|gb|EFH04231.1| GreA/GreB family elongation factor [Methylosinus trichosporium
OB3b]
Length = 157
Score = 193 bits (492), Expect = 5e-48, Method: Composition-based stats.
Identities = 97/157 (61%), Positives = 131/157 (83%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T+ G+ + ELR RQQ ERPRII+AISEAR++GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MDKVPMTAAGYAALDTELRHRQQTERPRIIQAISEARSHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+A+LE+ ++RAEVID+S +SG I FGATV+LV++++ ++K YQIVG+ EAD ++G VS
Sbjct: 61 RIADLEDKLSRAEVIDVSKLSGSTIKFGATVTLVDEDTEEEKAYQIVGEPEADAKNGRVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I+SPIARALIGK+ GD + V PGG K+YEIL+V ++
Sbjct: 121 IASPIARALIGKKAGDTVEVKTPGGGKSYEILKVAFV 157
>gi|209965306|ref|YP_002298221.1| transcription elongation factor GreA [Rhodospirillum centenum SW]
gi|209958772|gb|ACI99408.1| transcription elongation factor GreA [Rhodospirillum centenum SW]
Length = 157
Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats.
Identities = 82/156 (52%), Positives = 123/156 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++GF ++Q+EL+ + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKVPMTARGFTRLQEELKQLKSVERPAVIKAIAEAREHGDLSENAEYHAARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I+RAEVID + +SG I FGATV+L ++++ ++ YQIVG E+D+++G +S
Sbjct: 61 RVMELEDKISRAEVIDPTKLSGSAIKFGATVTLADEDTDEEVTYQIVGQDESDIKAGFIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+ARALIGK++GD + V PGG K+YEI + +
Sbjct: 121 ITSPLARALIGKQVGDSVEVTTPGGSKSYEITGIQF 156
>gi|163761166|ref|ZP_02168243.1| transcription elongation factor (transcript cleavage factor)
protein [Hoeflea phototrophica DFL-43]
gi|162281717|gb|EDQ32011.1| transcription elongation factor (transcript cleavage factor)
protein [Hoeflea phototrophica DFL-43]
Length = 158
Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats.
Identities = 107/157 (68%), Positives = 132/157 (84%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T G+ K+Q+ELRWRQQ ERPRII+AISEARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTQGGYTKLQEELRWRQQSERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE+ +RAE+ID+S MSGD + FGATVSLV++++ ++K YQIVGDQEADV+ G +
Sbjct: 61 GRIGELEDYTSRAEIIDVSKMSGDTVKFGATVSLVDEDTDEEKTYQIVGDQEADVKQGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPI+RALIGK +GD I V APGG K YEIL V W
Sbjct: 121 SISSPISRALIGKSVGDSIEVVAPGGSKAYEILAVKW 157
>gi|182677861|ref|YP_001832007.1| transcription elongation factor GreA [Beijerinckia indica subsp.
indica ATCC 9039]
gi|238691231|sp|B2IHJ7|GREA_BEII9 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|182633744|gb|ACB94518.1| transcription elongation factor GreA [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 157
Score = 192 bits (488), Expect = 2e-47, Method: Composition-based stats.
Identities = 96/156 (61%), Positives = 133/156 (85%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK P+T +G+ + +EL+ RQQEERPRII+AI+EAR++GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MDKFPMTPEGYHALDEELKRRQQEERPRIIQAIAEARSHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ ++RAE+ID+S +SG+ + FGATV+LV++++ ++K YQIVG+ EADV++G VS
Sbjct: 61 RIAELEDKLSRAEIIDVSKLSGNTVMFGATVTLVDEDTEEEKIYQIVGESEADVKAGRVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP ARALIGK++GD + VN PGG K+YEIL V +
Sbjct: 121 ITSPTARALIGKKIGDSVEVNTPGGGKSYEILNVAF 156
>gi|332974639|gb|EGK11556.1| transcription elongation factor GreA [Kingella kingae ATCC 23330]
Length = 186
Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats.
Identities = 81/159 (50%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ KIP+T G ++++ EL+ + RP +I AI+EAR++GDLSENAEY+AAK+ Q E
Sbjct: 28 IMKKIPLTVHGAERLKAELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKDRQGFIE 87
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+AELEN ++ A++ID + D +I FGATV+L++ +S ++ YQIVGD EAD++
Sbjct: 88 GRIAELENKLSHAQIIDPKEIHADGKIVFGATVNLMDLDSDEESCYQIVGDDEADIKLFK 147
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIARALIGKE GD+ V AP G + YEIL V +I
Sbjct: 148 ISVNSPIARALIGKEEGDVAEVQAPSGIREYEILTVQYI 186
>gi|254780440|ref|YP_003064853.1| transcription elongation factor GreA [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040117|gb|ACT56913.1| transcription elongation factor GreA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 158
Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats.
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE
Sbjct: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV
Sbjct: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI
Sbjct: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
>gi|241205678|ref|YP_002976774.1| transcription elongation factor GreA [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859568|gb|ACS57235.1| transcription elongation factor GreA [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 158
Score = 191 bits (487), Expect = 2e-47, Method: Composition-based stats.
Identities = 110/157 (70%), Positives = 137/157 (87%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++ RAEVID++ MSGD+I FGA V L+++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRISELEDLTARAEVIDLTKMSGDKIKFGAKVKLIDEDTDEEKTYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157
>gi|148560214|ref|YP_001259382.1| transcription elongation factor GreA [Brucella ovis ATCC 25840]
gi|148371471|gb|ABQ61450.1| transcription elongation factor GreA [Brucella ovis ATCC 25840]
Length = 203
Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats.
Identities = 101/157 (64%), Positives = 137/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 47 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 106
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 107 RINELEDLVARAEVIDVSKLTGDRIQFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 166
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 167 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 203
>gi|83309802|ref|YP_420066.1| transcription elongation factor GreA [Magnetospirillum magneticum
AMB-1]
gi|82944643|dbj|BAE49507.1| Transcription elongation factor [Magnetospirillum magneticum AMB-1]
Length = 157
Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats.
Identities = 85/156 (54%), Positives = 124/156 (79%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++++ELR + ER +I+AI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKIPMTPAGLAQLEEELRTLKYVERQAVIRAIAEAREHGDLSENAEYHAARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ELE+II+RA+VIDI+++SGD++ FGATV+L ++++ D+ Y IVG EAD++SG +S
Sbjct: 61 RVSELEDIISRAQVIDIASLSGDQVRFGATVTLADEDTDDEVVYTIVGAHEADIKSGRMS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+ARALIGK LGD + V APGG K+YEI+ V +
Sbjct: 121 VHSPLARALIGKHLGDTVEVTAPGGSKSYEIVDVRF 156
>gi|237815897|ref|ZP_04594894.1| transcription elongation factor GreA [Brucella abortus str. 2308 A]
gi|237789195|gb|EEP63406.1| transcription elongation factor GreA [Brucella abortus str. 2308 A]
Length = 203
Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats.
Identities = 101/157 (64%), Positives = 137/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 47 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 106
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 107 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 166
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 167 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 203
>gi|209550295|ref|YP_002282212.1| transcription elongation factor GreA [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|238058236|sp|B5ZXG2|GREA_RHILW RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|209536051|gb|ACI55986.1| transcription elongation factor GreA [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 158
Score = 191 bits (485), Expect = 4e-47, Method: Composition-based stats.
Identities = 111/157 (70%), Positives = 137/157 (87%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++ RAEVID++ MSGD+I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRISELEDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157
>gi|116253164|ref|YP_769002.1| transcription elongation factor GreA [Rhizobium leguminosarum bv.
viciae 3841]
gi|7387717|sp|O68546|GREA_RHILV RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123081835|sp|Q1MDR7|GREA_RHIL3 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|2944085|gb|AAC05214.1| transcription elongation factor homolog [Rhizobium leguminosarum]
gi|115257812|emb|CAK08910.1| putative transcription elongation factor [Rhizobium leguminosarum
bv. viciae 3841]
Length = 158
Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats.
Identities = 110/157 (70%), Positives = 137/157 (87%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++ RAEVID++ MSGD+I FGA V L+++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRISELEDLTARAEVIDLTKMSGDKIKFGAKVKLIDEDTEEEKTYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157
>gi|144897958|emb|CAM74822.1| Prokaryotic transcription elongation factor GreA [Magnetospirillum
gryphiswaldense MSR-1]
Length = 157
Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats.
Identities = 86/157 (54%), Positives = 122/157 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ ELR + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKIPMTPAGLTTLEDELRNLKAVERPAVIKAIAEAREHGDLSENAEYHAARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE++I+RA+VIDI+ MSGD++ FGATV+L +++S D+ Y IVG EAD++SG +S
Sbjct: 61 RVAELEDVISRAQVIDIALMSGDQVRFGATVTLADEDSDDEVVYTIVGAHEADIKSGRMS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SP+ARALIGK +GD + V PGG K+YE++ V ++
Sbjct: 121 VHSPLARALIGKHIGDTVEVTTPGGSKSYEVVDVRFV 157
>gi|15965326|ref|NP_385679.1| transcription elongation factor GreA [Sinorhizobium meliloti 1021]
gi|150396472|ref|YP_001326939.1| transcription elongation factor GreA [Sinorhizobium medicae WSM419]
gi|307307952|ref|ZP_07587677.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
gi|307317183|ref|ZP_07596624.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
gi|7387719|sp|P56894|GREA_RHIME RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189042248|sp|A6U8X4|GREA_SINMW RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|6224910|gb|AAF06007.1|AF193023_1 GreA [Sinorhizobium meliloti]
gi|15074506|emb|CAC46152.1| Transcription elongation factor [Sinorhizobium meliloti 1021]
gi|51451367|gb|AAU03120.1| GreA [Sinorhizobium meliloti]
gi|150027987|gb|ABR60104.1| transcription elongation factor GreA [Sinorhizobium medicae WSM419]
gi|306897271|gb|EFN28016.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
gi|306901568|gb|EFN32171.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
Length = 158
Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats.
Identities = 111/157 (70%), Positives = 134/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDK+P+T GF +Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVDKVPMTQGGFVNLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++I RAEVID+S MSG +I FGA V LV++++ ++K YQIVGDQEADV+ G +
Sbjct: 61 GRISELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKQGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEIL V W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW 157
>gi|190892720|ref|YP_001979262.1| transcription elongation factor (transcript cleavage factor)
protein [Rhizobium etli CIAT 652]
gi|238692510|sp|B3PUK3|GREA_RHIE6 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|190697999|gb|ACE92084.1| transcription elongation factor (transcript cleavage factor)
protein [Rhizobium etli CIAT 652]
gi|327192705|gb|EGE59642.1| transcription elongation factor (transcript cleavage factor)
protein [Rhizobium etli CNPAF512]
Length = 158
Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats.
Identities = 112/157 (71%), Positives = 136/157 (86%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDK+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVDKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAEVID++ MSGD+I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRITELEDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157
>gi|218671794|ref|ZP_03521463.1| transcription elongation factor GreA [Rhizobium etli GR56]
Length = 158
Score = 190 bits (482), Expect = 8e-47, Method: Composition-based stats.
Identities = 110/157 (70%), Positives = 136/157 (86%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++ RAEVID++ MSG +I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRISELEDLTARAEVIDLTKMSGHKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157
>gi|30249624|ref|NP_841694.1| transcription elongation factor GreA/GreB [Nitrosomonas europaea
ATCC 19718]
gi|30138987|emb|CAD85571.1| Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas
europaea ATCC 19718]
Length = 173
Score = 190 bits (482), Expect = 8e-47, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ IP+T G +K++ EL + RP +I AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 16 MNAIPITQAGAEKLRAELHEMKTVHRPAVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 75
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A++I+ +T++ D FGAT+ L++ + YQIVGD EAD++ G +
Sbjct: 76 RIAELESKLSNAQIINPATLNADGACVFGATIDLMDLGNNTTVTYQIVGDDEADIKQGKI 135
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GDI V APGG + YEIL V +I
Sbjct: 136 SISSPIARALIGKYAGDIAEVQAPGGVREYEILDVKYI 173
>gi|110634467|ref|YP_674675.1| transcription elongation factor GreA [Mesorhizobium sp. BNC1]
gi|123353513|sp|Q11GG5|GREA_MESSB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|110285451|gb|ABG63510.1| transcription elongation factor GreA [Chelativorans sp. BNC1]
Length = 157
Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats.
Identities = 103/156 (66%), Positives = 138/156 (88%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G++ +++ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MNKVPMTLAGYESLKEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ELE++I RAEVID++ +SGD + FGATV LV++++ ++K YQIVGDQEADV+SG +S
Sbjct: 61 RISELEDLIARAEVIDVTKLSGDTVKFGATVVLVDEDTEEEKTYQIVGDQEADVKSGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIARALIGK +GD+I VNAPGG + YE+L+V +
Sbjct: 121 ISSPIARALIGKGVGDLIEVNAPGGARGYEVLRVQY 156
>gi|86358571|ref|YP_470463.1| transcription elongation factor GreA [Rhizobium etli CFN 42]
gi|123738296|sp|Q2K600|GREA_RHIEC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|86282673|gb|ABC91736.1| transcription elongation factor (transcript cleavage factor)
protein [Rhizobium etli CFN 42]
Length = 158
Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats.
Identities = 111/157 (70%), Positives = 136/157 (86%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAEVID++ MSGD+I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRITELEDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157
>gi|294634505|ref|ZP_06713040.1| transcription elongation factor, cleaves 3 nucleotide of paused
mRNA [Edwardsiella tarda ATCC 23685]
gi|291092019|gb|EFE24580.1| transcription elongation factor, cleaves 3 nucleotide of paused
mRNA [Edwardsiella tarda ATCC 23685]
Length = 198
Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +K+++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 41 MNQIPMTLRGAEKLREELDFLKGTRRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 100
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M + R+ FGATVS+ ++ D++ Y+IVGD EAD + L+
Sbjct: 101 RIQEIEAKLSNAQVIDVTKMPNNGRVIFGATVSVENVDTEDQQTYRIVGDDEADFKHNLI 160
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE G+++++ PGGE YEIL+V ++
Sbjct: 161 SVNSPIARGLIGKEEGEVVTIKTPGGEVEYEILKVEYL 198
>gi|15889462|ref|NP_355143.1| transcription elongation factor GreA [Agrobacterium tumefaciens
str. C58]
gi|25452989|sp|Q8UDE5|GREA_AGRT5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|15157330|gb|AAK87928.1| transcription elongation facto [Agrobacterium tumefaciens str. C58]
Length = 158
Score = 188 bits (479), Expect = 1e-46, Method: Composition-based stats.
Identities = 110/157 (70%), Positives = 135/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELR+RQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTQGGFVKLQEELRFRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAEVID+S MSG +I FGATV L++++S ++K YQIVGDQEADV++G +
Sbjct: 61 GRITELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDSDEEKTYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEIL V W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKGYEILAVQW 157
>gi|114328953|ref|YP_746110.1| transcription elongation factor GreA [Granulibacter bethesdensis
CGDNIH1]
gi|114317127|gb|ABI63187.1| transcription elongation factor greA [Granulibacter bethesdensis
CGDNIH1]
Length = 157
Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats.
Identities = 85/156 (54%), Positives = 122/156 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T+ G +++ ELR + ERP +I+AI+EAR++GDLSENAEY AA+E Q+ EG
Sbjct: 1 MQKFPMTAGGLQRLEDELRQLKSVERPAVIRAIAEARSHGDLSENAEYHAARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ AEVID ST+SGD++ FGA V +V++ + + +YQIVG EAD++ GL+S
Sbjct: 61 RIEELEVIVSAAEVIDPSTLSGDQVKFGAHVQIVDEETDKEASYQIVGLHEADIKQGLLS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SSP+A+ALIGK+ GD ISV APGG+++YEIL V +
Sbjct: 121 VSSPLAKALIGKKPGDTISVPAPGGDRSYEILSVRF 156
>gi|154246690|ref|YP_001417648.1| transcription elongation factor GreA [Xanthobacter autotrophicus
Py2]
gi|154160775|gb|ABS67991.1| transcription elongation factor GreA [Xanthobacter autotrophicus
Py2]
Length = 168
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 93/156 (59%), Positives = 128/156 (82%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T+ G+ + QEL+ RQQ ERPRII AISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 12 MEKIPMTAAGYAALAQELKQRQQVERPRIISAISEARAHGDLSENAEYHAAKEQQSLNEG 71
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+A+LE+ ++RAEVID+S +SGD + FGATV+LV++++ ++K +QIVGD EAD ++G +S
Sbjct: 72 RVADLEDKLSRAEVIDVSKLSGDIVKFGATVTLVDEDTEEEKVWQIVGDSEADAKAGRIS 131
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSP+ARALIGK+ G + V P G +++EI+ V W
Sbjct: 132 ISSPVARALIGKKKGASVEVVTPKGARSFEIVAVRW 167
>gi|47716785|gb|AAT37570.1| GreA [Sinorhizobium meliloti]
Length = 163
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 111/157 (70%), Positives = 134/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDK+P+T GF +Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 6 MVDKVPMTQGGFVNLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 65
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++I RAEVID+S MSG +I FGA V LV++++ ++K YQIVGDQEADV+ G +
Sbjct: 66 GRISELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKQGRI 125
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEIL V W
Sbjct: 126 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW 162
>gi|323139044|ref|ZP_08074103.1| transcription elongation factor GreA [Methylocystis sp. ATCC 49242]
gi|322395704|gb|EFX98246.1| transcription elongation factor GreA [Methylocystis sp. ATCC 49242]
Length = 157
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 98/157 (62%), Positives = 133/157 (84%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T+ G+ + +ELR RQQE+RPRII+ ISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MDKVPMTAPGYAALAEELRRRQQEDRPRIIQQISEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ ++RAEVID+S ++G I FGATV++V++++ ++K YQIVG+ EADV+SG VS
Sbjct: 61 RIAELEDKLSRAEVIDVSKLTGSTIKFGATVTVVDEDTDEEKAYQIVGETEADVKSGRVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I+SPIARALIGK +GD + V PGG K+YEIL+V ++
Sbjct: 121 ITSPIARALIGKTVGDTVEVKTPGGGKSYEILKVAFV 157
>gi|269137754|ref|YP_003294454.1| transcription elongation factor [Edwardsiella tarda EIB202]
gi|267983414|gb|ACY83243.1| transcription elongation factor [Edwardsiella tarda EIB202]
gi|304557811|gb|ADM40475.1| Transcription elongation factor GreA [Edwardsiella tarda FL6-60]
Length = 158
Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +K+++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGAEKLREELDFLKGTRRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M + R+ FG+TVS+ ++ D++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMPNNGRVIFGSTVSVENLDTEDQQTYRIVGDDEADFKHNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE GD++++ PGGE YEIL+V ++
Sbjct: 121 SVNSPIARGLIGKEEGDVVTIKTPGGEVEYEILKVEYL 158
>gi|312795594|ref|YP_004028516.1| transcription elongation factor greA [Burkholderia rhizoxinica HKI
454]
gi|312167369|emb|CBW74372.1| Transcription elongation factor greA [Burkholderia rhizoxinica HKI
454]
Length = 179
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 86/157 (54%), Positives = 115/157 (73%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 22 MSTIPLTKRGADQLRDELQRLKSVERPSVIHAIAEARAQGDLSENAEYDAAKEKQAFIEG 81
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A++ID + D R+ FGATV L + +SGDK YQIVGD EAD++ GL+
Sbjct: 82 RIAELESKLSAAQIIDPKAVDADGRVVFGATVDLEDLDSGDKVTYQIVGDDEADLEHGLI 141
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+SSPIARALIGK GD+ +V AP G + YEI+ V +
Sbjct: 142 SVSSPIARALIGKFEGDVAAVQAPSGVREYEIIAVRY 178
>gi|222086556|ref|YP_002545090.1| transcription elongation factor (transcript cleavage factor)
protein [Agrobacterium radiobacter K84]
gi|254799543|sp|B9J753|GREA_AGRRK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|221724004|gb|ACM27160.1| transcription elongation factor (transcript cleavage factor)
protein [Agrobacterium radiobacter K84]
Length = 158
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 108/157 (68%), Positives = 135/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AISEARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTQNGFVKLQEELRWRQQEERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAEVID++ MSG +I FGA V L+++++ ++K+YQIVGDQEADV++G +
Sbjct: 61 GRIGELEDLTARAEVIDLTKMSGSKIKFGAKVKLIDEDTEEEKSYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEIL + W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKAYEILSISW 157
>gi|162149110|ref|YP_001603571.1| transcription elongation factor GreA [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787687|emb|CAP57283.1| Transcription elongation factor greA [Gluconacetobacter
diazotrophicus PAl 5]
Length = 157
Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats.
Identities = 86/156 (55%), Positives = 125/156 (80%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T KG ++++ELR + EERP +I+AI+EAR++GDLSENAEY AA++ Q+ EG
Sbjct: 1 MQKFPMTGKGLQRLEEELRKLKSEERPAVIRAIAEARSHGDLSENAEYHAARDRQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+II+ AEVID +++SGD++ FGA VSLV++ + + YQIVG EAD++ GL+S
Sbjct: 61 RILELEDIISSAEVIDPASLSGDQVKFGAQVSLVDEETDKEATYQIVGVHEADIKQGLLS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SSP+A++LIGK +GD +SV APGG++TYEIL V +
Sbjct: 121 VSSPLAKSLIGKRIGDSVSVPAPGGDRTYEILAVTY 156
>gi|329890723|ref|ZP_08269066.1| transcription elongation factor greA [Brevundimonas diminuta ATCC
11568]
gi|328846024|gb|EGF95588.1| transcription elongation factor greA [Brevundimonas diminuta ATCC
11568]
Length = 157
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 84/156 (53%), Positives = 123/156 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G+ + +L+ + ERP +I AI+EAR +GDLSENAEY AAKE Q EG
Sbjct: 1 MEKVPMTAEGYRSLDDQLKQLKSVERPSVIAAIAEAREHGDLSENAEYHAAKERQGWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+AE+E+ ++RA+VID+S +SGD++ FGATV+ V++++ ++ YQIVG+ EADV+ G +S
Sbjct: 61 SIAEIEDKLSRAQVIDVSKLSGDQVKFGATVTFVDEDTEEEGVYQIVGEHEADVKLGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIARALI KE+GD++ VN PGG K YEIL+V W
Sbjct: 121 IASPIARALISKEVGDVVEVNTPGGVKAYEILKVEW 156
>gi|74317147|ref|YP_314887.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC
25259]
gi|74056642|gb|AAZ97082.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC
25259]
Length = 158
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 87/157 (55%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T G +K++ EL+ + +RP +I+AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MTKFPLTVVGAEKLRAELQHLKSVQRPAVIQAIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE ++ A++ID +T+ D RI FGATV L + SGD YQIVGD EAD++ G +
Sbjct: 61 RIAELEGKLSNAQIIDPTTLDADGRIVFGATVDLEDVESGDSVTYQIVGDDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+SSPIARALIGK GD + V APGG + YE+L VL+
Sbjct: 121 SVSSPIARALIGKYAGDAVDVQAPGGVRQYEVLDVLY 157
>gi|238918415|ref|YP_002931929.1| hypothetical protein NT01EI_0456 [Edwardsiella ictaluri 93-146]
gi|238867983|gb|ACR67694.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
Length = 158
Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats.
Identities = 77/158 (48%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +K+++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGAEKLREELDFLKGTRRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M + R+ FG+TVS+ N+ D++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMPNNGRVIFGSTVSVENLNTEDQQTYRIVGDDEADFKHNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE GD++++ PGGE YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEEGDVVTIKTPGGEVEYEILNVEYL 158
>gi|260464000|ref|ZP_05812195.1| transcription elongation factor GreA [Mesorhizobium opportunistum
WSM2075]
gi|259030171|gb|EEW31452.1| transcription elongation factor GreA [Mesorhizobium opportunistum
WSM2075]
Length = 158
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 108/158 (68%), Positives = 139/158 (87%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++K+P+T +GF +++ELRWRQQEERPRII+AISEAR++GDLSENAEY AAKE Q+LNE
Sbjct: 1 MMNKVPMTGEGFASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE+ I RAEVID++ +SG+++ FGATV LV++++ +KK YQIVGDQEADV+SG +
Sbjct: 61 GRVNELEDYIARAEVIDVTKLSGEKVKFGATVVLVDEDTEEKKTYQIVGDQEADVKSGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGKE+GD I VNAPGG + YEI+QV +I
Sbjct: 121 SISSPIARALIGKEVGDAIEVNAPGGARGYEIVQVQFI 158
>gi|288957102|ref|YP_003447443.1| transcription elongation factor [Azospirillum sp. B510]
gi|288909410|dbj|BAI70899.1| transcription elongation factor [Azospirillum sp. B510]
Length = 157
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 79/156 (50%), Positives = 121/156 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+++Q+EL+ + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKVPMTAAGFNRLQEELKHLKITERPAVIKAIAEAREHGDLSENAEYHAARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I+RAEVID + ++G + FGATV+L ++++ ++ YQIVG E+D+++ L+S
Sbjct: 61 RVLELEDKISRAEVIDPAKLTGSTVKFGATVTLADQDTDEETTYQIVGQDESDIKNRLLS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I +P+ARALI K +GD + V+ PGG K YEI+ V +
Sbjct: 121 IQAPLARALINKSVGDSVEVSTPGGSKLYEIVSVEF 156
>gi|14041681|emb|CAC38777.1| GreA protein [Rhizobium tropici]
Length = 158
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 108/157 (68%), Positives = 135/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTQNGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++ RAEVID++ MSG +I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRISELEDLTARAEVIDLTKMSGSKIKFGAKVKLVDEDTEEEKIYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEIL + W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKGYEILSITW 157
>gi|311108151|ref|YP_003981004.1| transcription elongation factor GreA [Achromobacter xylosoxidans
A8]
gi|310762840|gb|ADP18289.1| transcription elongation factor GreA [Achromobacter xylosoxidans
A8]
Length = 232
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +++Q+EL+ + ERP +I AI+EARA GDLSENAEY AA+E Q EG
Sbjct: 75 MSAIPLTVRGAERLQEELQRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEG 134
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE ++ A +ID + + R FGATV + + +SGD+ YQIVGD EAD++S L+
Sbjct: 135 RIAELEGTLSNAHLIDPTALEAEGRAVFGATVDIEDLDSGDRVTYQIVGDVEADIKSNLI 194
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSP+ARALIGK GD++ V AP G + YE+L V +I
Sbjct: 195 SVSSPVARALIGKSEGDVVEVVAPAGVREYEVLGVRYI 232
>gi|13472314|ref|NP_103881.1| transcription elongation factor GreA [Mesorhizobium loti
MAFF303099]
gi|25453003|sp|Q98I49|GREA_RHILO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|14023060|dbj|BAB49667.1| transcriptional elongation factor [Mesorhizobium loti MAFF303099]
Length = 157
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 108/157 (68%), Positives = 139/157 (88%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +GF +++ELRWRQQEERPRII+AISEAR++GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MNKVPMTGEGFASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++I RAEVID++ +SGD++ FGATV LV++++ +KK YQIVGDQEADV+SG +S
Sbjct: 61 RVNELEDLIARAEVIDVTKLSGDKVKFGATVVLVDEDTEEKKTYQIVGDQEADVKSGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGKE+GD I VNAPGG + YEI+QV +I
Sbjct: 121 ISSPIARALIGKEVGDAIEVNAPGGARGYEIVQVQFI 157
>gi|39937132|ref|NP_949408.1| transcription elongation factor GreA [Rhodopseudomonas palustris
CGA009]
gi|192292967|ref|YP_001993572.1| transcription elongation factor GreA [Rhodopseudomonas palustris
TIE-1]
gi|81619506|sp|Q6N2H8|GREA_RHOPA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|229485904|sp|B3QJZ1|GREA_RHOPT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|39650990|emb|CAE29513.1| transcriptional elongation factor greA [Rhodopseudomonas palustris
CGA009]
gi|192286716|gb|ACF03097.1| transcription elongation factor GreA [Rhodopseudomonas palustris
TIE-1]
Length = 158
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 87/157 (55%), Positives = 122/157 (77%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+KIP+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKIPMTASGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE+ + RA++ID+S +SGD + FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 61 GRINELEDKLARADIIDVSKLSGDTVKFGATVTLIDEDTEKKAVWQIVGEAEADAKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK+ G + V APGG K YEI +V W
Sbjct: 121 SITSPLARALIGKKAGSSVEVVAPGGAKAYEIAKVEW 157
>gi|148259921|ref|YP_001234048.1| transcription elongation factor GreA [Acidiphilium cryptum JF-5]
gi|326403125|ref|YP_004283206.1| transcription elongation factor GreA [Acidiphilium multivorum
AIU301]
gi|166200647|sp|A5FWZ7|GREA_ACICJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|146401602|gb|ABQ30129.1| transcription elongation factor GreA [Acidiphilium cryptum JF-5]
gi|325049986|dbj|BAJ80324.1| transcription elongation factor GreA [Acidiphilium multivorum
AIU301]
Length = 157
Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats.
Identities = 85/156 (54%), Positives = 120/156 (76%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T G ++ ELR + EERP II+AI+EAR++GDLSENAEY +A+E Q+ EG
Sbjct: 1 MQKFPMTGPGLQNLEAELRHLKSEERPAIIRAIAEARSHGDLSENAEYHSARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE II+ AEVID ST+SGD + FGA V L+++ S + YQIVG EAD+++G +S
Sbjct: 61 RIAELEEIISAAEVIDPSTLSGDTVKFGAHVELIDEESDKEVTYQIVGVHEADIKAGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++SP+A++LIGK+ GD +SV APGG+++YEIL V +
Sbjct: 121 VTSPLAKSLIGKKPGDTVSVPAPGGDRSYEILAVRF 156
>gi|118591047|ref|ZP_01548447.1| transcription elongation factor GreA [Stappia aggregata IAM 12614]
gi|118436569|gb|EAV43210.1| transcription elongation factor GreA [Stappia aggregata IAM 12614]
Length = 157
Score = 186 bits (474), Expect = 6e-46, Method: Composition-based stats.
Identities = 92/157 (58%), Positives = 128/157 (81%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+TS G+ +Q EL+ R ERPRI+ AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKVPMTSAGYKMLQDELKERTSVERPRIVDAIAEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ELE+ ++RAE+ID+S +SGD + FGATV+L+++++ ++K Y IVGD E+DV+ VS
Sbjct: 61 RISELEDKLSRAEIIDVSKLSGDIVKFGATVTLIDEDTEEEKKYMIVGDVESDVKHNKVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK +GD + V APGG ++YEI+ V +I
Sbjct: 121 ISSPIARALIGKSIGDSVEVAAPGGARSYEIVDVRFI 157
>gi|260913960|ref|ZP_05920434.1| transcription elongation factor GreA [Pasteurella dagmatis ATCC
43325]
gi|260632047|gb|EEX50224.1| transcription elongation factor GreA [Pasteurella dagmatis ATCC
43325]
Length = 158
Score = 186 bits (473), Expect = 7e-46, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G ++++QEL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGAEQLRQELDFLKNTRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ +VID++ M + ++ FGATV L+ ++ D+ +YQIVGD EA+++ GL+
Sbjct: 61 RIQEIEGKLSNCQVIDVTKMPNNGKVIFGATVVLLNVDTDDEVSYQIVGDDEANIKDGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D++++ PGG+ +EI++V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVAIQTPGGKVEFEIIEVNYV 158
>gi|170747000|ref|YP_001753260.1| transcription elongation factor GreA [Methylobacterium
radiotolerans JCM 2831]
gi|170653522|gb|ACB22577.1| transcription elongation factor GreA [Methylobacterium
radiotolerans JCM 2831]
Length = 179
Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats.
Identities = 96/155 (61%), Positives = 127/155 (81%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
DK+P+T +G +++EL+ RQQ ER RII+AI+EARA GDLSENAEY AAKE Q+ NEGR
Sbjct: 23 DKVPITVRGLAALEEELKHRQQVERQRIIQAIAEARALGDLSENAEYHAAKEAQSHNEGR 82
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE++I RAEVID++ +SGDRI FGATV LV++++ ++K YQIVG+ EADV+SG VSI
Sbjct: 83 VLELESMIARAEVIDVTKLSGDRIKFGATVKLVDEDTEEEKTYQIVGEPEADVRSGRVSI 142
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SPIARALIGK +GD + V PGG K+YE++ V +
Sbjct: 143 TSPIARALIGKGVGDTVEVTTPGGGKSYEVVAVQY 177
>gi|329118200|ref|ZP_08246910.1| transcription elongation factor GreA [Neisseria bacilliformis ATCC
BAA-1200]
gi|327465621|gb|EGF11896.1| transcription elongation factor GreA [Neisseria bacilliformis ATCC
BAA-1200]
Length = 207
Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats.
Identities = 77/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++ EL+ + RP +I AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 50 MKKIPLTIRGAELLKSELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKERQGFIEG 109
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ ++ A VI+ + + ++ FGAT+ L + +SG+ YQIVG+ EAD+++G +
Sbjct: 110 RIAEIEHKLSHAHVINPAEIHAEGKVVFGATLDLEDLDSGEHVRYQIVGEDEADIKAGKI 169
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARALIGKE GD+ V APGG + YEI+ V ++
Sbjct: 170 SVGSPIARALIGKEEGDVAEVQAPGGVREYEIVAVEYV 207
>gi|170741569|ref|YP_001770224.1| transcription elongation factor GreA [Methylobacterium sp. 4-46]
gi|238688050|sp|B0U8M0|GREA_METS4 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|168195843|gb|ACA17790.1| transcription elongation factor GreA [Methylobacterium sp. 4-46]
Length = 158
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 93/157 (59%), Positives = 132/157 (84%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T +G+ +++EL+ RQQ ERPRII+AI+EARA GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MDKVPITIRGYAALEEELKHRQQVERPRIIQAIAEARALGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++I+RAE+ID+S +SG ++ FGATV L+++++ ++K YQIVG+ EADV+SG VS
Sbjct: 61 RVLELESLISRAEIIDVSKLSGTKVKFGATVQLIDEDTEEEKTYQIVGEPEADVRSGRVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I+SP+ARALIGK +GD + V PGG K+YEI+ + ++
Sbjct: 121 ITSPVARALIGKGVGDTVEVTTPGGGKSYEIVGIRYV 157
>gi|153008990|ref|YP_001370205.1| transcription elongation factor GreA [Ochrobactrum anthropi ATCC
49188]
gi|189042242|sp|A6WZH2|GREA_OCHA4 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|151560878|gb|ABS14376.1| transcription elongation factor GreA [Ochrobactrum anthropi ATCC
49188]
Length = 157
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 101/157 (64%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKFPMTPGGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAE+ID+S +SGDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDLVARAEIIDVSKLSGDRIKFGATVTMIDEDTDEEKVYQIVGDQEADVKEGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIVGLKFV 157
>gi|149773197|dbj|BAF64773.1| transcription elongation factor [Shewanella livingstonensis]
Length = 204
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 66/159 (41%), Positives = 111/159 (69%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ K+P+T G D++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E
Sbjct: 46 IMSKVPMTVVGADQLRKELELLKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICE 105
Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ ++E ++ A++ID++ + + R+ FG TV+++ ++ + Y+IVGD EAD++ L
Sbjct: 106 ARIRDIEGKLSNAQIIDVTKLENTGRVIFGTTVTILNIDTDAEVTYRIVGDDEADIKQNL 165
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIAR LIGK GD +S+ PGG YEI++V ++
Sbjct: 166 ISVNSPIARGLIGKSEGDEVSITTPGGLTDYEIVKVQYL 204
>gi|254293474|ref|YP_003059497.1| transcription elongation factor GreA [Hirschia baltica ATCC 49814]
gi|254042005|gb|ACT58800.1| transcription elongation factor GreA [Hirschia baltica ATCC 49814]
Length = 157
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 83/157 (52%), Positives = 120/157 (76%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T++G ++ EL+ + RP +I+AI+ AR +GDLSENAEY AAKE Q+ EG
Sbjct: 1 MQRIPMTAQGHQALEDELKHLKTVARPEVIQAIAVAREHGDLSENAEYHAAKESQSHIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ EL++ + RA+VID S +SGD I FGATV++V++++ ++ Y+IVG+ EA++ G +S
Sbjct: 61 RIIELDSKLARAQVIDTSKLSGDNIKFGATVTVVDEDTEEEATYKIVGEDEANIADGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SSP+ARA+IGKE GDI V+APGG KTYEIL V WI
Sbjct: 121 LSSPLARAMIGKEEGDIAEVSAPGGAKTYEILDVKWI 157
>gi|296116673|ref|ZP_06835283.1| transcription elongation factor GreA [Gluconacetobacter hansenii
ATCC 23769]
gi|295976885|gb|EFG83653.1| transcription elongation factor GreA [Gluconacetobacter hansenii
ATCC 23769]
Length = 157
Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats.
Identities = 85/156 (54%), Positives = 121/156 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T G +++ ELR + EERP II+AI+EAR++GDLSENAEY AA+E Q+ EG
Sbjct: 1 MQKFPMTGPGLQRLEDELRKLKSEERPAIIRAIAEARSHGDLSENAEYHAARERQSFTEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ AEVID +++SGD++ FGA V LV++ + + YQIVG EAD++ GL+S
Sbjct: 61 RILELEEIVSSAEVIDPASLSGDQVKFGARVHLVDEETDKEATYQIVGVYEADIKQGLLS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SSP+A++LIGK +GD +SV APGG++TYEIL V +
Sbjct: 121 VSSPLAKSLIGKSVGDTVSVPAPGGDRTYEILAVTY 156
>gi|222149296|ref|YP_002550253.1| transcription elongation factor GreA [Agrobacterium vitis S4]
gi|254799544|sp|B9JYZ7|GREA_AGRVS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|221736280|gb|ACM37243.1| transcription elongation facto [Agrobacterium vitis S4]
Length = 158
Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats.
Identities = 108/157 (68%), Positives = 134/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDK+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVDKVPMTQNGFSKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ELE++ RAEVID+S MSG +I FGATV L+++++ ++K YQIVGDQEADV++G +
Sbjct: 61 GRVSELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDTDEEKIYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARA+IGKE GD I V APGG K YEI+ V W
Sbjct: 121 SISSPIARAMIGKEAGDSIEVVAPGGSKAYEIIAVNW 157
>gi|114321129|ref|YP_742812.1| transcription elongation factor GreA [Alkalilimnicola ehrlichii
MLHE-1]
gi|122311293|sp|Q0A765|GREA_ALHEH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|114227523|gb|ABI57322.1| transcription elongation factor GreA [Alkalilimnicola ehrlichii
MLHE-1]
Length = 158
Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats.
Identities = 83/157 (52%), Positives = 125/157 (79%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T++G +K+++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MSKVPLTARGAEKLREELQRLKTVERPRIIQAIAEAREHGDLKENAEYHAAREQQSFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID + ++ ++ FGATV LV+++SG + YQIVG+ EAD++ GLV
Sbjct: 61 RIQEIEGKLSNAQVIDPAAVNAQGKVIFGATVDLVDEDSGKEVTYQIVGEDEADIKQGLV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIARALIGKE GD+++V APGGE+ YEI++V +
Sbjct: 121 SVNSPIARALIGKEEGDLVTVQAPGGEREYEIVEVRY 157
>gi|319408896|emb|CBI82553.1| transcription elongation factor GreA [Bartonella schoenbuchensis
R1]
Length = 157
Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats.
Identities = 104/157 (66%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTTGFENLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVID+S +SGDRI FGAT+ L+ +++ +KK YQIVGDQEADV++G +S
Sbjct: 61 RINELEDYIARAEVIDVSRLSGDRIKFGATIKLLNEDTEEKKVYQIVGDQEADVKTGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG YEI+++ +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKIQYI 157
>gi|316935637|ref|YP_004110619.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
DX-1]
gi|315603351|gb|ADU45886.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
DX-1]
Length = 158
Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats.
Identities = 87/157 (55%), Positives = 122/157 (77%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+KIP+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKIPMTASGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE+ + RA++ID+S +SGD + FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 61 GRINELEDKLARADIIDVSKLSGDTVKFGATVTLIDEDTEKKAVWQIVGEAEADAKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK+ G + V APGG K YEI +V W
Sbjct: 121 SITSPLARALIGKKAGSSVEVVAPGGAKAYEIEKVEW 157
>gi|163867955|ref|YP_001609159.1| transcription elongation factor GreA [Bartonella tribocorum CIP
105476]
gi|189042236|sp|A9IRC3|GREA_BART1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|161017606|emb|CAK01164.1| transcription elongation factor GreA [Bartonella tribocorum CIP
105476]
Length = 157
Score = 185 bits (471), Expect = 2e-45, Method: Composition-based stats.
Identities = 104/157 (66%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVID+S +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDYIARAEVIDVSRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKIGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157
>gi|83594219|ref|YP_427971.1| transcription elongation factor GreA [Rhodospirillum rubrum ATCC
11170]
gi|123766955|sp|Q2RQB1|GREA_RHORT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|83577133|gb|ABC23684.1| GreA/GreB family elongation factor [Rhodospirillum rubrum ATCC
11170]
Length = 157
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 121/156 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G +++ EL+ + +RP +I+AISEAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKIPMTPDGLARLEAELKSLKSVDRPAVIRAISEARDHGDLSENAEYHAARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++ +RAEVIDIS +SGD + FGATVS+++++S ++ YQIVG EAD+++G +S
Sbjct: 61 RIKELEDVTSRAEVIDISKLSGDTVRFGATVSVLDEDSEEQTTYQIVGAHEADLKAGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++SPI +ALIGK++GD I V APGG K YE+ V +
Sbjct: 121 VASPIGKALIGKKVGDSIEVKAPGGSKFYEVTMVRF 156
>gi|242240758|ref|YP_002988939.1| transcription elongation factor GreA [Dickeya dadantii Ech703]
gi|242132815|gb|ACS87117.1| transcription elongation factor GreA [Dickeya dadantii Ech703]
Length = 158
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +K++QEL + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQFPMTLRGAEKLRQELEHLKTVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ MS R+ FGATV+++ +S +++ Y+IVGD EAD++ L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMSATGRVIFGATVTVLNVDSDEEQTYRIVGDDEADIKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D+++++ PGG YEIL+V ++
Sbjct: 121 SVNSPIARGLIGKETDDVVTISTPGGAVEYEILKVEYL 158
>gi|301156348|emb|CBW15819.1| transcription elongation factor [Haemophilus parainfluenzae T3T1]
Length = 158
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G + +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGAELLREELDFLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + +VID++ + + ++ FGATV LV ++ ++ YQIVGD EAD++SGL+
Sbjct: 61 RIQEIEGKLANCQVIDVTKLPNNGKVIFGATVVLVNTDTDEEVTYQIVGDDEADIKSGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKEL D +++ PGG +EI++V +I
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGTVEFEIIEVNYI 158
>gi|58038799|ref|YP_190763.1| transcription elongation factor GreA [Gluconobacter oxydans 621H]
gi|58001213|gb|AAW60107.1| Transcription elongation factor [Gluconobacter oxydans 621H]
Length = 157
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 86/156 (55%), Positives = 123/156 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T+KG +++ ELR + +RP +I+AI+EAR +GDLSENAEY AA++ Q+ EG
Sbjct: 1 MQKIPMTAKGQQRLEDELRTLKSVDRPAVIRAIAEAREHGDLSENAEYHAARDRQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE II+ AEVID ST++G R+ FGA + LV++ + + YQIVG EAD++ GL+S
Sbjct: 61 RVLELEGIISNAEVIDPSTLTGTRVRFGAHIELVDEETDKEALYQIVGVHEADIKQGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSP+A+ALIGK++GD +SV APGG++TYEIL+V +
Sbjct: 121 ISSPLAKALIGKDVGDSVSVPAPGGDRTYEILKVTY 156
>gi|319781954|ref|YP_004141430.1| transcription elongation factor GreA [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317167842|gb|ADV11380.1| transcription elongation factor GreA [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 157
Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats.
Identities = 109/157 (69%), Positives = 138/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +GF +++ELRWRQQEERPRII+AISEAR++GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MNKVPMTGEGFASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVID+S +SGD+I FGATV LV++++ +KK Y+IVGDQEADV+SG +S
Sbjct: 61 RVNELEDYIARAEVIDVSKLSGDKIKFGATVVLVDEDTEEKKTYRIVGDQEADVKSGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGKE+GD I VNAPGG + YEI+QV +I
Sbjct: 121 ISSPIARALIGKEVGDAIEVNAPGGARGYEIVQVQFI 157
>gi|300023325|ref|YP_003755936.1| transcription elongation factor GreA [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525146|gb|ADJ23615.1| transcription elongation factor GreA [Hyphomicrobium denitrificans
ATCC 51888]
Length = 157
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 91/156 (58%), Positives = 120/156 (76%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++++P+T +G+ ++ EL+ + ERPRII AISEARA+GDLSENAEY AAKE Q LNE
Sbjct: 1 MERVPMTIEGYKNLETELQRLKAVERPRIIAAISEARAHGDLSENAEYHAAKEQQGLNEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ I RAEVID S +SGD + FGATV+L +++S DK Y IVGD EAD+++G +S
Sbjct: 61 RVAELEDKINRAEVIDTSKLSGDTVKFGATVTLQDEDSEDKVTYTIVGDTEADLKNGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIARALIGK G+ + V P G +T E+L+V W
Sbjct: 121 ISSPIARALIGKTNGESVDVTTPKGTRTLEVLKVSW 156
>gi|227113764|ref|ZP_03827420.1| transcription elongation factor GreA [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 158
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ M+ + R+ FG+TV+++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIQDIEAKLSNAQVIDVTKMTANGRVIFGSTVTVMNLDNDEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++ + PGG+ YEIL+V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVVIRTPGGDVEYEILKVEYL 158
>gi|325578454|ref|ZP_08148589.1| transcription elongation factor GreA [Haemophilus parainfluenzae
ATCC 33392]
gi|325160190|gb|EGC72319.1| transcription elongation factor GreA [Haemophilus parainfluenzae
ATCC 33392]
Length = 158
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G + ++QEL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGAELLRQELDFLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ + +VID++ + + ++ FGATV LV ++ ++ YQIVGD EAD++SGL+
Sbjct: 61 RIQEIESKLANCQVIDVTKLPNNGKVIFGATVVLVNTDTDEEVTYQIVGDDEADIKSGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKEL D +++ PGG +EI++V +I
Sbjct: 121 SVNSPIARGLVGKELDDTVNITTPGGAVEFEIIEVNYI 158
>gi|312114890|ref|YP_004012486.1| transcription elongation factor GreA [Rhodomicrobium vannielii ATCC
17100]
gi|311220019|gb|ADP71387.1| transcription elongation factor GreA [Rhodomicrobium vannielii ATCC
17100]
Length = 159
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 91/158 (57%), Positives = 127/158 (80%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K+P+T++G ++ ELR + ER RIIKAI+EAR++GDLSENAEY AAKE Q +NE
Sbjct: 1 MSEKVPMTAQGHAALEAELRILRSVERQRIIKAIAEARSHGDLSENAEYHAAKEAQGMNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE+ ++RAEVIDIS +SG+ + FGATV+LV++++ ++ YQIVGD EADV++G V
Sbjct: 61 AKVADLEDKLSRAEVIDISKLSGETVKFGATVTLVDEDTEEEVKYQIVGDLEADVRNGKV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SPIARALIGK+ GD + VN P G K+YEIL+V ++
Sbjct: 121 SIGSPIARALIGKKAGDSVEVNTPRGAKSYEILKVEFL 158
>gi|296532781|ref|ZP_06895460.1| transcription elongation factor GreA [Roseomonas cervicalis ATCC
49957]
gi|296266889|gb|EFH12835.1| transcription elongation factor GreA [Roseomonas cervicalis ATCC
49957]
Length = 163
Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 121/156 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V K P+T++G +++ ELR + EERP +I+AI+EARA+GDLSENAEY AA+E Q+ EG
Sbjct: 7 VQKFPMTAEGLARLEDELRQLKAEERPAVIRAIAEARAHGDLSENAEYHAARERQSFIEG 66
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+I+ EVID + +SGD++ FGA V+++++ S ++K Y+IVG EAD + G +S
Sbjct: 67 RIAELESIVPSVEVIDTTKLSGDQVRFGAYVTIIDEESEEEKTYRIVGAHEADTKLGSIS 126
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSP+A+AL+GK+LGD + V APGG + YEI +V +
Sbjct: 127 ISSPLAKALLGKKLGDSVEVPAPGGARAYEIAKVRF 162
>gi|113461143|ref|YP_719211.1| transcription elongation factor GreA [Haemophilus somnus 129PT]
gi|170717727|ref|YP_001784798.1| transcription elongation factor GreA [Haemophilus somnus 2336]
gi|112823186|gb|ABI25275.1| transcription elongation factor GreA [Haemophilus somnus 129PT]
gi|168825856|gb|ACA31227.1| transcription elongation factor GreA [Haemophilus somnus 2336]
Length = 158
Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +++++EL + + RP IIKAISEAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGAEQLREELDFLKNVRRPEIIKAISEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + ++ID++ + + ++ FGATV L+ ++ ++ Y+IVGD EAD++SGL+
Sbjct: 61 RIQEIEGKLANCQIIDVTKLPNNGKVIFGATVVLLNIDTDEEVTYRIVGDDEADIKSGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIAR LIGK++ D + + PGG+ +EI++V +
Sbjct: 121 SVNSPIARGLIGKDVDDTVVITTPGGKVEFEIVEVEY 157
>gi|225627946|ref|ZP_03785982.1| transcription elongation factor GreA [Brucella ceti str. Cudo]
gi|225617109|gb|EEH14155.1| transcription elongation factor GreA [Brucella ceti str. Cudo]
Length = 203
Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats.
Identities = 100/157 (63%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 47 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 106
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 107 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 166
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISS IARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 167 ISSLIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 203
>gi|251792645|ref|YP_003007371.1| transcription elongation factor GreA [Aggregatibacter aphrophilus
NJ8700]
gi|247534038|gb|ACS97284.1| transcription elongation factor GreA [Aggregatibacter aphrophilus
NJ8700]
Length = 158
Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G + +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQQIPMTVRGAELLRKELEYLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + ++ID++ + + ++ FGATV+LV N+ D+ Y+IVGD EAD+++GL+
Sbjct: 61 RIQEIEGKLANCQIIDVTKIPNNGKVIFGATVTLVNTNTNDEVTYRIVGDDEADIKNGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++++ PGG +EI++V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVNITTPGGVVEFEIIEVEYV 158
>gi|270158808|ref|ZP_06187465.1| transcription elongation factor GreA domain protein [Legionella
longbeachae D-4968]
gi|289166397|ref|YP_003456535.1| transcription elongation factor GreA [Legionella longbeachae
NSW150]
gi|269990833|gb|EEZ97087.1| transcription elongation factor GreA domain protein [Legionella
longbeachae D-4968]
gi|288859570|emb|CBJ13538.1| transcription elongation factor GreA [Legionella longbeachae
NSW150]
Length = 158
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T G + +++EL + +RPRI+ AI+ ARA+GDL ENAEY AA+E Q+ NEG
Sbjct: 1 MSKYPMTVHGAEALKEELHRLKFVDRPRIVDAIATARAHGDLKENAEYHAAREQQSFNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE ++ A++IDIS + + ++ FG TV++ + + YQIVG+ EAD++ +
Sbjct: 61 RIQELEAKLSHAQIIDISKLPNNGKVVFGCTVTICNVANETQLTYQIVGEDEADIKQNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SSPI R LIGKEL D ++VN PGG YEI+ V +I
Sbjct: 121 SYSSPIGRGLIGKELDDSVTVNTPGGLVEYEIIDVQYI 158
>gi|240850162|ref|YP_002971555.1| transcription elongation factor GreA [Bartonella grahamii as4aup]
gi|240267285|gb|ACS50873.1| transcription elongation factor GreA [Bartonella grahamii as4aup]
Length = 157
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 103/157 (65%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVID++ +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDYIARAEVIDVTRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKVGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157
>gi|217970148|ref|YP_002355382.1| transcription elongation factor GreA [Thauera sp. MZ1T]
gi|217507475|gb|ACK54486.1| transcription elongation factor GreA [Thauera sp. MZ1T]
Length = 158
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T G +K++ EL + ERP +I AI+EAR++GDLSENAEY+AAK+ Q EG
Sbjct: 1 MNKTPLTVAGAEKLRTELHRLKTVERPNVIAAIAEARSHGDLSENAEYEAAKDRQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ + A++ID + + D R FGATV L + SG YQIVGD EAD++ +
Sbjct: 61 RIMEVESKLANAQIIDPTLLDADGRCVFGATVELEDLESGQVVTYQIVGDDEADIKDNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GDI V APGG + YEIL V ++
Sbjct: 121 SISSPIARALIGKYAGDIAEVQAPGGVREYEILDVRYV 158
>gi|254719540|ref|ZP_05181351.1| transcription elongation factor GreA [Brucella sp. 83/13]
gi|265984548|ref|ZP_06097283.1| transcription elongation factor grea [Brucella sp. 83/13]
gi|306838479|ref|ZP_07471320.1| transcription elongation factor GreA [Brucella sp. NF 2653]
gi|264663140|gb|EEZ33401.1| transcription elongation factor grea [Brucella sp. 83/13]
gi|306406443|gb|EFM62681.1| transcription elongation factor GreA [Brucella sp. NF 2653]
Length = 157
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 101/157 (64%), Positives = 137/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKFPMTPRGFEKLKEELRWRQQTERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 157
>gi|91784541|ref|YP_559747.1| transcription elongation factor GreA [Burkholderia xenovorans
LB400]
gi|91688495|gb|ABE31695.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400]
Length = 176
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 85/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +P+T +G + ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG
Sbjct: 19 MSTVPLTKRGAEMLRDELQRLKSVERPSVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 78
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ + A+VID + + D R+ FGATV L + NSG YQIVGD EAD+ GL+
Sbjct: 79 RIAEIESKLAGAQVIDPAAVEADGRVVFGATVELEDLNSGASVKYQIVGDDEADIDHGLI 138
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ SV APGG + YEI+ V ++
Sbjct: 139 SISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 176
>gi|313673623|ref|YP_004051734.1| transcription elongation factor grea [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940379|gb|ADR19571.1| transcription elongation factor GreA [Calditerrivibrio
nitroreducens DSM 19672]
Length = 157
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 83/155 (53%), Positives = 113/155 (72%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+IP+T +GF+K+++EL + ER +I+AI EARA+GDLSENAEY AAKE Q L E
Sbjct: 1 MDRIPITPEGFEKLKKELERLKTVERKEVIEAIKEARAHGDLSENAEYDAAKERQGLIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AELE+ I R EVID S SGD++ FG V + +G+KK Y+IVG EAD+ G +S
Sbjct: 61 KIAELESKIGRFEVIDPSNFSGDKVVFGVYVEIENVETGEKKRYRIVGPDEADISKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ SPIA+AL+GK +GD + V APGG+K YEIL +
Sbjct: 121 VISPIAKALMGKSVGDTVLVRAPGGDKEYEILDIS 155
>gi|260596192|ref|YP_003208763.1| transcription elongation factor GreA [Cronobacter turicensis z3032]
gi|260215369|emb|CBA27383.1| Transcription elongation factor greA [Cronobacter turicensis z3032]
Length = 158
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQPIPMTLRGAEKLREELEYLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VIDI+ M + R+ FG+TV+++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVTVLNLDTDEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKEL D++++N PGG+ +EI++V ++
Sbjct: 121 SVNSPIARGLVGKELDDVVTINTPGGQVEFEIIKVDYL 158
>gi|325293542|ref|YP_004279406.1| transcription elongation factor GreA [Agrobacterium sp. H13-3]
gi|325061395|gb|ADY65086.1| transcription elongation factor GreA [Agrobacterium sp. H13-3]
Length = 158
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 109/157 (69%), Positives = 135/157 (85%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T GF K+Q+ELR+RQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTHGGFIKLQEELRFRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAEVID+S MSG +I FGATV L++++S +++ YQIVGDQEADV++G +
Sbjct: 61 GRITELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDSDEERIYQIVGDQEADVKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSPIARALIGKE+GD I VNAPGG K YEIL V W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKGYEILAVQW 157
>gi|220924293|ref|YP_002499595.1| transcription elongation factor GreA [Methylobacterium nodulans ORS
2060]
gi|254799562|sp|B8IBN8|GREA_METNO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|219948900|gb|ACL59292.1| transcription elongation factor GreA [Methylobacterium nodulans ORS
2060]
Length = 158
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 94/156 (60%), Positives = 132/156 (84%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +GF ++QEL+ RQQ ERPRII+AI+EARA GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKVPITIRGFAALEQELKHRQQVERPRIIQAIAEARALGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++I+RAEVID++ +SG ++ FGATV L+++++ ++K YQIVG+ EADV+SG VS
Sbjct: 61 RVLELESLISRAEVIDVAKLSGSKVKFGATVQLIDEDTEEEKTYQIVGEPEADVRSGRVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+ARALIGK +GD + V+ PGG K+YEI+ + +
Sbjct: 121 ITSPVARALIGKGVGDTVEVSTPGGGKSYEIVGISF 156
>gi|239832384|ref|ZP_04680713.1| transcription elongation factor GreA [Ochrobactrum intermedium LMG
3301]
gi|239824651|gb|EEQ96219.1| transcription elongation factor GreA [Ochrobactrum intermedium LMG
3301]
Length = 157
Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats.
Identities = 102/157 (64%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKFPMTPGGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAEVID+S +SGDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDLVARAEVIDVSKLSGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIVGLKFV 157
>gi|330993911|ref|ZP_08317841.1| Transcription elongation factor greA [Gluconacetobacter sp. SXCC-1]
gi|329758857|gb|EGG75371.1| Transcription elongation factor greA [Gluconacetobacter sp. SXCC-1]
Length = 157
Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats.
Identities = 86/156 (55%), Positives = 123/156 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T G +++ ELR + EERP II+AI+EAR++GDLSENAEY AA+E Q+ EG
Sbjct: 1 MQKFPMTGPGLQRLEDELRKLKSEERPAIIRAIAEARSHGDLSENAEYHAARERQSFTEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ AEVID +++SGD++ FGA V LV++ + + +YQIVG EAD++ GL+S
Sbjct: 61 RIQELEEIVSSAEVIDPASLSGDQVKFGARVKLVDEETDREASYQIVGVYEADIKQGLLS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSP+A++LIGK +GD +SV APGG++TYEIL+V +
Sbjct: 121 ISSPLAKSLIGKSIGDTVSVPAPGGDRTYEILEVTY 156
>gi|167587476|ref|ZP_02379864.1| transcription elongation factor GreA [Burkholderia ubonensis Bu]
Length = 158
Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats.
Identities = 85/158 (53%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ ++ A++ID S++ D R+ F ATV L + SGD YQIVGD EAD+ GL+
Sbjct: 61 RIAEIESKLSAAQIIDPSSLDADGRVVFAATVELEDLESGDTVKYQIVGDDEADLDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158
>gi|158422770|ref|YP_001524062.1| transcription elongation factor GreA [Azorhizobium caulinodans ORS
571]
gi|189042232|sp|A8HR94|GREA_AZOC5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|158329659|dbj|BAF87144.1| transcription elongation factor [Azorhizobium caulinodans ORS 571]
Length = 157
Score = 184 bits (468), Expect = 4e-45, Method: Composition-based stats.
Identities = 96/156 (61%), Positives = 131/156 (83%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GF +++ELR+RQQ ERPRII AISEARA+GDLSENAEY AAKELQ+LNEG
Sbjct: 1 MEKIPMTGAGFVALEEELRFRQQVERPRIISAISEARAHGDLSENAEYHAAKELQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ I+RAEVID+S +SGD + FGATV+LV++++ +++ +QIVGD EAD ++G +S
Sbjct: 61 RIAELEDKISRAEVIDVSKLSGDIVKFGATVTLVDEDTEEERVWQIVGDSEADAKAGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSP+ARALIGK+ G + V P G +++EI++V W
Sbjct: 121 ISSPVARALIGKKKGSSVEVVTPKGARSFEIVEVRW 156
>gi|121602520|ref|YP_989263.1| transcription elongation factor GreA [Bartonella bacilliformis
KC583]
gi|189042235|sp|A1UTG0|GREA_BARBK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|120614697|gb|ABM45298.1| transcription elongation factor GreA [Bartonella bacilliformis
KC583]
Length = 157
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 104/157 (66%), Positives = 135/157 (85%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFETLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSYNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVID+S +SG++I FGATV L+ +++ +KK YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDYIARAEVIDVSRLSGNQIKFGATVKLLNEDTEEKKVYQIVGDQEADVKIGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGKE GD+I VNAPGG YEI+++ +I
Sbjct: 121 ISSPIARALIGKEEGDVIEVNAPGGAHNYEIIKIQYI 157
>gi|152979122|ref|YP_001344751.1| transcription elongation factor GreA [Actinobacillus succinogenes
130Z]
gi|150840845|gb|ABR74816.1| transcription elongation factor GreA [Actinobacillus succinogenes
130Z]
Length = 158
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGAEQLREELDFLKNTRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ ++ID++ + + ++ FG+TV LV ++ D+ YQIVGD EAD+++GL+
Sbjct: 61 RIQEIESKLSNGQIIDVTKIPNNGKVIFGSTVVLVNVDTDDEATYQIVGDDEADIKAGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D +++ PGG ++I++V +I
Sbjct: 121 SVNSPIARGLIGKEVDDTVNIVTPGGTVEFDIIEVNYI 158
>gi|49474490|ref|YP_032532.1| transcription elongation factor GreA [Bartonella quintana str.
Toulouse]
gi|81646921|sp|Q6FZ57|GREA_BARQU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|49239994|emb|CAF26408.1| Transcription elongation factor greA [Bartonella quintana str.
Toulouse]
Length = 157
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 104/157 (66%), Positives = 137/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQEERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFESLKKELRWRQQEERPRIIEAISEARAHGDLSENAEYHAAKEAQSYNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVI++S +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV++G +S
Sbjct: 61 RINELEDYIARAEVINVSRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKTGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157
>gi|16127080|ref|NP_421644.1| transcription elongation factor GreA [Caulobacter crescentus CB15]
gi|221235877|ref|YP_002518314.1| transcription elongation factor GreA [Caulobacter crescentus
NA1000]
gi|25453007|sp|Q9A4I3|GREA_CAUCR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799552|sp|B8H1V7|GREA_CAUCN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|13424460|gb|AAK24812.1| transcription elongation factor GreA [Caulobacter crescentus CB15]
gi|220965050|gb|ACL96406.1| transcription elongation factor greA [Caulobacter crescentus
NA1000]
Length = 157
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 84/157 (53%), Positives = 126/157 (80%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G+ + +EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MEKVPMTVAGYQTLDEELKRLKTVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AE+E+ I RA+VID++ +SG ++ FGATVS+V++++ ++ YQIVGD EADV+SG +S
Sbjct: 61 QIAEIEDKIARAQVIDVTKLSGKQVKFGATVSVVDEDTEEEARYQIVGDHEADVKSGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SSP++RA+IGKE+G+++ VN PGG K YEIL+V W+
Sbjct: 121 LSSPLSRAMIGKEVGEVVEVNTPGGVKAYEILKVEWL 157
>gi|163857848|ref|YP_001632146.1| hypothetical protein Bpet3535 [Bordetella petrii DSM 12804]
gi|163261576|emb|CAP43878.1| greA [Bordetella petrii]
Length = 158
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T++G +++Q EL + ERP +I AI+EARA GDLSENAEY AA+E Q EG
Sbjct: 1 MSAIPLTARGAERLQAELHRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE ++ A +ID + + D R FGATV + + +SGD+ +YQIVGD EAD++S L+
Sbjct: 61 RIAELEGTLSNAHIIDPAALDADGRAVFGATVDIEDLDSGDRLSYQIVGDVEADIKSNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSP+ARALIGK GD++ V AP G + YE+L V +I
Sbjct: 121 SVSSPVARALIGKSEGDVVEVKAPSGVREYEVLGVRYI 158
>gi|17986791|ref|NP_539425.1| transcription elongation factor GreA [Brucella melitensis bv. 1
str. 16M]
gi|23502373|ref|NP_698500.1| transcription elongation factor GreA [Brucella suis 1330]
gi|62290393|ref|YP_222186.1| transcription elongation factor GreA [Brucella abortus bv. 1 str.
9-941]
gi|82700315|ref|YP_414889.1| transcription elongation factor GreA [Brucella melitensis biovar
Abortus 2308]
gi|161619451|ref|YP_001593338.1| transcription elongation factor GreA [Brucella canis ATCC 23365]
gi|163843758|ref|YP_001628162.1| transcription elongation factor GreA [Brucella suis ATCC 23445]
gi|189024618|ref|YP_001935386.1| transcription elongation factor GreA [Brucella abortus S19]
gi|225852983|ref|YP_002733216.1| transcription elongation factor GreA [Brucella melitensis ATCC
23457]
gi|254689690|ref|ZP_05152944.1| transcription elongation factor GreA [Brucella abortus bv. 6 str.
870]
gi|254694180|ref|ZP_05156008.1| transcription elongation factor GreA [Brucella abortus bv. 3 str.
Tulya]
gi|254697833|ref|ZP_05159661.1| transcription elongation factor GreA [Brucella abortus bv. 2 str.
86/8/59]
gi|254702221|ref|ZP_05164049.1| transcription elongation factor GreA [Brucella suis bv. 5 str. 513]
gi|254704756|ref|ZP_05166584.1| transcription elongation factor GreA [Brucella suis bv. 3 str. 686]
gi|254730722|ref|ZP_05189300.1| transcription elongation factor GreA [Brucella abortus bv. 4 str.
292]
gi|256045124|ref|ZP_05448025.1| transcription elongation factor GreA [Brucella melitensis bv. 1
str. Rev.1]
gi|256061556|ref|ZP_05451698.1| transcription elongation factor GreA [Brucella neotomae 5K33]
gi|256114061|ref|ZP_05454831.1| transcription elongation factor GreA [Brucella melitensis bv. 3
str. Ether]
gi|256257941|ref|ZP_05463477.1| transcription elongation factor GreA [Brucella abortus bv. 9 str.
C68]
gi|256263538|ref|ZP_05466070.1| transcription elongation factor grea [Brucella melitensis bv. 2
str. 63/9]
gi|256369920|ref|YP_003107431.1| transcription elongation factor GreA [Brucella microti CCM 4915]
gi|260546930|ref|ZP_05822669.1| transcription elongation factor grea [Brucella abortus NCTC 8038]
gi|260565274|ref|ZP_05835758.1| transcription elongation factor grea [Brucella melitensis bv. 1
str. 16M]
gi|260565998|ref|ZP_05836468.1| transcription elongation factor greA [Brucella suis bv. 4 str. 40]
gi|260755224|ref|ZP_05867572.1| transcription elongation factor grea [Brucella abortus bv. 6 str.
870]
gi|260758444|ref|ZP_05870792.1| transcription elongation factor grea [Brucella abortus bv. 4 str.
292]
gi|260762270|ref|ZP_05874613.1| transcription elongation factor grea [Brucella abortus bv. 2 str.
86/8/59]
gi|260884238|ref|ZP_05895852.1| transcription elongation factor grea [Brucella abortus bv. 9 str.
C68]
gi|261214487|ref|ZP_05928768.1| transcription elongation factor grea [Brucella abortus bv. 3 str.
Tulya]
gi|261325565|ref|ZP_05964762.1| transcription elongation factor grea [Brucella neotomae 5K33]
gi|261752795|ref|ZP_05996504.1| transcription elongation factor grea [Brucella suis bv. 5 str. 513]
gi|261755454|ref|ZP_05999163.1| transcription elongation factor grea [Brucella suis bv. 3 str. 686]
gi|265991559|ref|ZP_06104116.1| transcription elongation factor grea [Brucella melitensis bv. 1
str. Rev.1]
gi|265995396|ref|ZP_06107953.1| transcription elongation factor grea [Brucella melitensis bv. 3
str. Ether]
gi|294852821|ref|ZP_06793494.1| transcription elongation factor greA [Brucella sp. NVSL 07-0026]
gi|297248778|ref|ZP_06932496.1| transcription elongation factor greA [Brucella abortus bv. 5 str.
B3196]
gi|306843149|ref|ZP_07475769.1| transcription elongation factor GreA [Brucella sp. BO2]
gi|306844505|ref|ZP_07477094.1| transcription elongation factor GreA [Brucella sp. BO1]
gi|54037214|sp|P64272|GREA_BRUSU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54041322|sp|P64271|GREA_BRUME RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|75496478|sp|Q57C09|GREA_BRUAB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123768486|sp|Q2YRN8|GREA_BRUA2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189042237|sp|A9M6H1|GREA_BRUC2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189042238|sp|B0CHU1|GREA_BRUSI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238689389|sp|B2S6W5|GREA_BRUA1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799548|sp|C0REE0|GREA_BRUMB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|17982422|gb|AAL51689.1| transcription elongation factor grea [Brucella melitensis bv. 1
str. 16M]
gi|23348356|gb|AAN30415.1| transcription elongation factor GreA [Brucella suis 1330]
gi|62196525|gb|AAX74825.1| GreA, transcription elongation factor [Brucella abortus bv. 1 str.
9-941]
gi|82616416|emb|CAJ11479.1| Prokaryotic transcription elongation factor GreA/GreB:Prokaryotic
transcription elongation factor GreA [Brucella
melitensis biovar Abortus 2308]
gi|161336262|gb|ABX62567.1| transcription elongation factor GreA [Brucella canis ATCC 23365]
gi|163674481|gb|ABY38592.1| transcription elongation factor GreA [Brucella suis ATCC 23445]
gi|189020190|gb|ACD72912.1| transcription elongation factor GreA [Brucella abortus S19]
gi|225641348|gb|ACO01262.1| transcription elongation factor GreA [Brucella melitensis ATCC
23457]
gi|256000083|gb|ACU48482.1| transcription elongation factor GreA [Brucella microti CCM 4915]
gi|260095980|gb|EEW79857.1| transcription elongation factor grea [Brucella abortus NCTC 8038]
gi|260151342|gb|EEW86436.1| transcription elongation factor grea [Brucella melitensis bv. 1
str. 16M]
gi|260155516|gb|EEW90596.1| transcription elongation factor greA [Brucella suis bv. 4 str. 40]
gi|260668762|gb|EEX55702.1| transcription elongation factor grea [Brucella abortus bv. 4 str.
292]
gi|260672702|gb|EEX59523.1| transcription elongation factor grea [Brucella abortus bv. 2 str.
86/8/59]
gi|260675332|gb|EEX62153.1| transcription elongation factor grea [Brucella abortus bv. 6 str.
870]
gi|260873766|gb|EEX80835.1| transcription elongation factor grea [Brucella abortus bv. 9 str.
C68]
gi|260916094|gb|EEX82955.1| transcription elongation factor grea [Brucella abortus bv. 3 str.
Tulya]
gi|261301545|gb|EEY05042.1| transcription elongation factor grea [Brucella neotomae 5K33]
gi|261742548|gb|EEY30474.1| transcription elongation factor grea [Brucella suis bv. 5 str. 513]
gi|261745207|gb|EEY33133.1| transcription elongation factor grea [Brucella suis bv. 3 str. 686]
gi|262766509|gb|EEZ12298.1| transcription elongation factor grea [Brucella melitensis bv. 3
str. Ether]
gi|263002343|gb|EEZ14918.1| transcription elongation factor grea [Brucella melitensis bv. 1
str. Rev.1]
gi|263093566|gb|EEZ17591.1| transcription elongation factor grea [Brucella melitensis bv. 2
str. 63/9]
gi|294821410|gb|EFG38409.1| transcription elongation factor greA [Brucella sp. NVSL 07-0026]
gi|297175947|gb|EFH35294.1| transcription elongation factor greA [Brucella abortus bv. 5 str.
B3196]
gi|306275116|gb|EFM56872.1| transcription elongation factor GreA [Brucella sp. BO1]
gi|306286672|gb|EFM58230.1| transcription elongation factor GreA [Brucella sp. BO2]
gi|326539229|gb|ADZ87444.1| transcription elongation factor GreA [Brucella melitensis M5-90]
Length = 157
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 101/157 (64%), Positives = 137/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 157
>gi|254470230|ref|ZP_05083634.1| transcription elongation factor GreA [Pseudovibrio sp. JE062]
gi|211960541|gb|EEA95737.1| transcription elongation factor GreA [Pseudovibrio sp. JE062]
Length = 157
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 93/156 (59%), Positives = 125/156 (80%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G+ + +EL+ R ERPRII AISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKVPMTPEGYAMLTEELKHRTTGERPRIIAAISEARAHGDLSENAEYHAAKEQQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE ++ AEVID++ +SGD + FGATVSLV++++ ++K Y IVGD EADV+ G +S
Sbjct: 61 RINELEGLLGLAEVIDLTKLSGDTVKFGATVSLVDEDTEEEKKYMIVGDVEADVKRGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIARALIGK +GD + V APGG + YEI++V +
Sbjct: 121 ISSPIARALIGKSVGDSVEVAAPGGARGYEIVEVEF 156
>gi|99078719|ref|YP_611977.1| transcription elongation factor GreA [Ruegeria sp. TM1040]
gi|99035857|gb|ABF62715.1| transcription elongation factor GreA [Ruegeria sp. TM1040]
Length = 156
Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats.
Identities = 80/156 (51%), Positives = 121/156 (77%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T +GF ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MDKIPMTPQGFHALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +++ A+VID S +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGVLSLADVIDPSKLSG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIARALIGKE GD + V PGG+++YEIL + +
Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGDRSYEILDITY 155
>gi|288940454|ref|YP_003442694.1| transcription elongation factor GreA [Allochromatium vinosum DSM
180]
gi|288895826|gb|ADC61662.1| transcription elongation factor GreA [Allochromatium vinosum DSM
180]
Length = 158
Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G +K+++EL ++ ERPRII+AI+EARA+GDL ENAEY AA+E Q EG
Sbjct: 1 MNKVPLTARGAEKLREELEQLKRVERPRIIEAIAEARAHGDLKENAEYHAAREQQGFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++TM + ++ FGATV ++E + ++ YQIVG+ EAD++ GL+
Sbjct: 61 RIKDIEGKLSHAQIIDVTTMPHNGKVIFGATVKVLELETDEEHCYQIVGEDEADLKQGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SP+AR LIGK GD+ S+ APGG + +EIL+V ++
Sbjct: 121 SVGSPLARCLIGKAEGDVASLQAPGGLREFEILEVQYV 158
>gi|261820118|ref|YP_003258224.1| transcription elongation factor GreA [Pectobacterium wasabiae
WPP163]
gi|261604131|gb|ACX86617.1| transcription elongation factor GreA [Pectobacterium wasabiae
WPP163]
Length = 159
Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 113/159 (71%), Gaps = 2/159 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM--SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L
Sbjct: 61 RIQDIEAKLSNAQVIDVTKMAANNGRVIFGATVTVMNLDNDEEQTYRIVGDDEADFKQNL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIAR LIGKE D++ + PGG+ YE+L+V ++
Sbjct: 121 ISVNSPIARGLIGKEQDDVVVIRTPGGDVEYEVLKVEYL 159
>gi|251791044|ref|YP_003005765.1| transcription elongation factor GreA [Dickeya zeae Ech1591]
gi|247539665|gb|ACT08286.1| transcription elongation factor GreA [Dickeya zeae Ech1591]
Length = 158
Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQFPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMAANGRVIFGATVTVMNLDTEEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++++N PGG YEIL+V+++
Sbjct: 121 SVNSPIARGLIGKEEDDVVTINTPGGMVEYEILKVVYL 158
>gi|254503831|ref|ZP_05115982.1| transcription elongation factor GreA subfamily [Labrenzia
alexandrii DFL-11]
gi|222439902|gb|EEE46581.1| transcription elongation factor GreA subfamily [Labrenzia
alexandrii DFL-11]
Length = 157
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 96/157 (61%), Positives = 129/157 (82%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+TS G+ +Q EL+ R ERPRI+ AISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKVPMTSAGYTMLQSELKERTGVERPRIVDAISEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ ++RAE+ID+S +SGD + FGATVSLV++++ ++K Y IVGD E+DV+ VS
Sbjct: 61 RIAELEDKLSRAEIIDVSKLSGDVVKFGATVSLVDEDTEEEKKYMIVGDVESDVKQSKVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK +GD + V APGG ++YEI++V +I
Sbjct: 121 ISSPIARALIGKTVGDSVEVAAPGGARSYEIVEVQFI 157
>gi|156935703|ref|YP_001439619.1| transcription elongation factor GreA [Cronobacter sakazakii ATCC
BAA-894]
gi|156533957|gb|ABU78783.1| hypothetical protein ESA_03572 [Cronobacter sakazakii ATCC BAA-894]
Length = 158
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQPIPMTLRGAEKLREELEFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VIDI+ M + R+ FG+TV+++ ++ ++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVTVLNLDTDEELTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKEL D++++N PGG+ +EI++V ++
Sbjct: 121 SVNSPIARGLVGKELDDVVTINTPGGQVEFEIIKVDYL 158
>gi|319944199|ref|ZP_08018475.1| transcription elongation factor GreA [Lautropia mirabilis ATCC
51599]
gi|319742494|gb|EFV94905.1| transcription elongation factor GreA [Lautropia mirabilis ATCC
51599]
Length = 159
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M P+T G ++ EL+ + ERP +I AI+EARA GDLSENAEY++AKE Q+ E
Sbjct: 1 MATSFPLTKHGAQLLKDELQRLKSVERPNVINAIAEARAQGDLSENAEYESAKERQSFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+AELE ++ A++ID + + D R+ FGATV L + +SGDK YQIVG+ EAD++
Sbjct: 61 GRIAELEGKLSAAQIIDPAALDADGRVVFGATVQLEDIDSGDKVTYQIVGEDEADLKLSK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S++SP+ARALIGK GD+ S APGGE+ YEIL VL+
Sbjct: 121 ISVASPLARALIGKYAGDVASFQAPGGEREYEILDVLY 158
>gi|16762061|ref|NP_457678.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16766595|ref|NP_462210.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29143550|ref|NP_806892.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56415228|ref|YP_152303.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62181807|ref|YP_218224.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161616306|ref|YP_001590271.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167552055|ref|ZP_02345808.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167995305|ref|ZP_02576395.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168231907|ref|ZP_02656965.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168237998|ref|ZP_02663056.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168243132|ref|ZP_02668064.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168262691|ref|ZP_02684664.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168463479|ref|ZP_02697396.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168819635|ref|ZP_02831635.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194442444|ref|YP_002042555.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194451049|ref|YP_002047327.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194472290|ref|ZP_03078274.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194737942|ref|YP_002116247.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197248717|ref|YP_002148223.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197262177|ref|ZP_03162251.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197364158|ref|YP_002143795.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198244973|ref|YP_002217271.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200388684|ref|ZP_03215296.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204931178|ref|ZP_03221972.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205354200|ref|YP_002228001.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207858547|ref|YP_002245198.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213425423|ref|ZP_03358173.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213646994|ref|ZP_03377047.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|224585094|ref|YP_002638893.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238910092|ref|ZP_04653929.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289825810|ref|ZP_06544978.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|54037219|sp|P64282|GREA_SALTI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54041329|sp|P64281|GREA_SALTY RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|25321438|pir||AB0903 transcription elongation factor STY3477 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16421857|gb|AAL22169.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16504364|emb|CAD07816.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29139185|gb|AAO70752.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56129485|gb|AAV78991.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|62129440|gb|AAX67143.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Salmonella enterica subsp. enterica serovar
Choleraesuis str. SC-B67]
gi|161365670|gb|ABX69438.1| hypothetical protein SPAB_04114 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194401107|gb|ACF61329.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194409353|gb|ACF69572.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194458654|gb|EDX47493.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194713444|gb|ACF92665.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195633532|gb|EDX51946.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197095635|emb|CAR61203.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|197212420|gb|ACH49817.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197240432|gb|EDY23052.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197289064|gb|EDY28433.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197939489|gb|ACH76822.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199605782|gb|EDZ04327.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204319945|gb|EDZ05151.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205273981|emb|CAR38987.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205323254|gb|EDZ11093.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205327000|gb|EDZ13764.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205333717|gb|EDZ20481.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205337869|gb|EDZ24633.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205343382|gb|EDZ30146.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205348488|gb|EDZ35119.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206710350|emb|CAR34708.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224469622|gb|ACN47452.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|261248464|emb|CBG26301.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267995496|gb|ACY90381.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301159848|emb|CBW19367.1| transcription elongation factor [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312914323|dbj|BAJ38297.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320087743|emb|CBY97507.1| Transcription elongation factor greA Transcript cleavage factor
greA [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|321225982|gb|EFX51036.1| Transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322615302|gb|EFY12223.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618339|gb|EFY15230.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322622856|gb|EFY19700.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322626822|gb|EFY23619.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322631391|gb|EFY28151.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322635342|gb|EFY32056.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322643341|gb|EFY39905.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322647087|gb|EFY43588.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322648890|gb|EFY45335.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322655082|gb|EFY51393.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322657685|gb|EFY53953.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322664181|gb|EFY60379.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322667464|gb|EFY63626.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674712|gb|EFY70804.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675655|gb|EFY71728.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682291|gb|EFY78314.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322684894|gb|EFY80892.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322716294|gb|EFZ07865.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323131658|gb|ADX19088.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323195901|gb|EFZ81072.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323199018|gb|EFZ84115.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323204282|gb|EFZ89291.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323207629|gb|EFZ92576.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211318|gb|EFZ96162.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323214740|gb|EFZ99489.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221220|gb|EGA05646.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323224039|gb|EGA08332.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323230312|gb|EGA14431.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233288|gb|EGA17382.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323239325|gb|EGA23375.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242424|gb|EGA26450.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323246934|gb|EGA30900.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323254133|gb|EGA37953.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255250|gb|EGA39027.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323262713|gb|EGA46269.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323264023|gb|EGA47531.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323269409|gb|EGA52864.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326625049|gb|EGE31394.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326629321|gb|EGE35664.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
gi|332990156|gb|AEF09139.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 158
Score = 183 bits (466), Expect = 5e-45, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++ + PGG+ YE+L+V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 158
>gi|258542082|ref|YP_003187515.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-01]
gi|256633160|dbj|BAH99135.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-01]
gi|256636217|dbj|BAI02186.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-03]
gi|256639272|dbj|BAI05234.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-07]
gi|256642326|dbj|BAI08281.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-22]
gi|256645381|dbj|BAI11329.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-26]
gi|256648436|dbj|BAI14377.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-32]
gi|256651489|dbj|BAI17423.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654480|dbj|BAI20407.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
3283-12]
Length = 157
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 86/157 (54%), Positives = 122/157 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T KG +++ ELR + EERP +I+AI+EAR++GDLSENAEY AA+E Q+ EG
Sbjct: 1 MQKTPMTGKGLLQLEDELRKLKSEERPAVIRAIAEARSHGDLSENAEYHAARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ AEVI+ +++SG ++ FGATV LV++++ + YQIVG EAD++ +S
Sbjct: 61 RILELEELISTAEVIEPTSLSGKQVKFGATVCLVDEDTDKEITYQIVGLHEADIKQHKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSP+A+ALIGKE GD +SV APGG++TYEIL V +I
Sbjct: 121 ISSPLAKALIGKEEGDTVSVPAPGGDRTYEILSVKFI 157
>gi|319897099|ref|YP_004135294.1| transcription elongation factor [Haemophilus influenzae F3031]
gi|317432603|emb|CBY80964.1| transcription elongation factor [Haemophilus influenzae F3031]
Length = 158
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G ++++QEL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQQIPMTVRGAEQLRQELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A+VID++ M + ++ FG TV LV ++ ++ Y+IVGD EAD++SGL+
Sbjct: 61 RIQEIEGKLGNAQVIDVTKMPNNGKVIFGTTVVLVNTDTDEEVTYRIVGDDEADIKSGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158
>gi|220934154|ref|YP_002513053.1| transcription elongation factor GreA [Thioalkalivibrio sp.
HL-EbGR7]
gi|254799576|sp|B8GNX7|GREA_THISH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|219995464|gb|ACL72066.1| transcription elongation factor GreA [Thioalkalivibrio sp.
HL-EbGR7]
Length = 158
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 120/158 (75%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T G +K++ EL+ + E+RPR+I AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MSKTPLTVAGANKLKAELQKLKSEDRPRVIAAIAEAREHGDLKENAEYHAAREQQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A++ID++T++ G ++ FGATV L ++ +G + YQIVGD EAD++ G +
Sbjct: 61 RIKEIEAKLSNAQIIDVTTLNAGGKVVFGATVDLSDEETGKEVTYQIVGDDEADIKEGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGKE GD+++V APGG+K YEI+ V +I
Sbjct: 121 SVNSPIARALIGKEEGDVVTVKAPGGDKDYEIVAVKYI 158
>gi|159045616|ref|YP_001534410.1| transcription elongation factor GreA [Dinoroseobacter shibae DFL
12]
gi|157913376|gb|ABV94809.1| transcription elongation factor GreA [Dinoroseobacter shibae DFL
12]
Length = 171
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 82/156 (52%), Positives = 122/156 (78%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T +G + EL+ + ERP +I+AI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 16 MEKIPMTRRGHSALDTELKQLKSVERPAVIRAIAEAREHGDLSENAEYHAAREKQSFIEG 75
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +++RA+VID +T+SG + FGATV++V++++ ++K YQIVG+ EAD++ GL++
Sbjct: 76 RVKELEALLSRAQVIDPATLSG-AVKFGATVTIVDEDTDEEKTYQIVGEAEADIEKGLLN 134
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIARALIGKE GD + V PGG K+YEIL++ +
Sbjct: 135 LKSPIARALIGKEEGDSVEVRTPGGTKSYEILEIAY 170
>gi|329848667|ref|ZP_08263695.1| transcription elongation factor greA [Asticcacaulis biprosthecum
C19]
gi|328843730|gb|EGF93299.1| transcription elongation factor greA [Asticcacaulis biprosthecum
C19]
Length = 157
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 84/157 (53%), Positives = 124/157 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G+ + EL+ + ERP +I AISEAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MEKVPMTVGGYKSLDDELKRLKSIERPAVIAAISEARSHGDLSENAEYHAAKERQGWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++A++E+ I+RA+VID++ +SG I FGATV++V++++ ++ YQ+VGD EADV+SG +S
Sbjct: 61 QIADIEDKISRAQVIDVTKLSGQNIKFGATVTVVDEDTEEEGRYQVVGDHEADVRSGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SSP++RA+IGKE+GD++ V PGG K YEIL+V WI
Sbjct: 121 LSSPLSRAMIGKEVGDVVEVVTPGGVKAYEILKVEWI 157
>gi|186475640|ref|YP_001857110.1| transcription elongation factor GreA [Burkholderia phymatum STM815]
gi|184192099|gb|ACC70064.1| transcription elongation factor GreA [Burkholderia phymatum STM815]
Length = 158
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G D+++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGADQLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ + A++ID S + D R+ F ATV L + +SGD YQIVGD EAD++ GL+
Sbjct: 61 RIAEIESKLAAAQIIDPSALDADGRVVFAATVDLEDLDSGDSVTYQIVGDDEADLEHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIIAVRYI 158
>gi|197106054|ref|YP_002131431.1| transcription elongation factor GreA [Phenylobacterium zucineum
HLK1]
gi|238690169|sp|B4RH54|GREA_PHEZH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|196479474|gb|ACG79002.1| transcription elongation factor GreA [Phenylobacterium zucineum
HLK1]
Length = 157
Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats.
Identities = 84/157 (53%), Positives = 127/157 (80%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G+ + +EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MEKVPMTAEGYKALDEELKRLKTVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AE+E+ + RA+VID+S +SG+++ FGATVSL+++++ ++ YQIVG+ EADV++G VS
Sbjct: 61 QIAEIEDKMARAQVIDVSKLSGEQVKFGATVSLIDEDTEEEARYQIVGEHEADVKAGRVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++SPIARA+IGKE GD++ VN PGG K YEI +V W+
Sbjct: 121 VTSPIARAIIGKETGDVVEVNTPGGVKAYEITKVEWV 157
>gi|206889798|ref|YP_002248384.1| transcription elongation factor GreA [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|238058240|sp|B5YJG9|GREA_THEYD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|206741736|gb|ACI20793.1| transcription elongation factor GreA [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 158
Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats.
Identities = 74/157 (47%), Positives = 118/157 (75%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+IP+T +G++K+++EL + ERP IIKAI+EARA+GDLSENAEY AA+E Q+ E
Sbjct: 1 MTDRIPMTPEGYEKLKEELDRLIKIERPAIIKAIAEARAHGDLSENAEYHAAREKQSFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL+ + RA VID S ++ +++AFGA V +++ ++ ++K + +VG EADV++G +
Sbjct: 61 GRIQELQAKLARAYVIDPSKINQNKVAFGAKVRVIDIDTEEEKEFHLVGPDEADVKNGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ +ALIGKE+G+ +++ AP YEI+ + +
Sbjct: 121 SITSPVGKALIGKEVGEQVTIKAPAKTFNYEIISISF 157
>gi|85715963|ref|ZP_01046940.1| transcription elongation factor GreA [Nitrobacter sp. Nb-311A]
gi|85697161|gb|EAQ35042.1| transcription elongation factor GreA [Nitrobacter sp. Nb-311A]
Length = 158
Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats.
Identities = 89/158 (56%), Positives = 122/158 (77%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MVDK+P+T G + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVDKVPMTRGGHAALADELKKRQSVDRPRIIEQIAEARSHGDLSENAEYHAAKEEQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA++ID+S +SGD I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 61 GRIAELEDKLARADIIDVSKLSGDTIMFGATVTLIDEDTDKKAVWQIVGEAEADAKQGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI+SP+ARALIGK+ G + V APGG K YEI +V W+
Sbjct: 121 SITSPLARALIGKKKGSSVEVVAPGGAKAYEIAKVEWL 158
>gi|261345170|ref|ZP_05972814.1| transcription elongation factor GreA [Providencia rustigianii DSM
4541]
gi|282566862|gb|EFB72397.1| transcription elongation factor GreA [Providencia rustigianii DSM
4541]
Length = 158
Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVFGANKLREELEYLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ ++VIDI+ M + R+ FGATV+++ ++ ++ Y+IVGD EAD++ L+
Sbjct: 61 RIQEIESKLSHSQVIDITKMVNNGRVIFGATVTVLNLDTDEELTYRIVGDDEADIKVNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKE+ D++++ PGG+ +EIL+V +I
Sbjct: 121 SVNSPIARGLVGKEVDDVVTIKTPGGDVEFEILKVEYI 158
>gi|254418720|ref|ZP_05032444.1| transcription elongation factor GreA subfamily [Brevundimonas sp.
BAL3]
gi|196184897|gb|EDX79873.1| transcription elongation factor GreA subfamily [Brevundimonas sp.
BAL3]
Length = 157
Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats.
Identities = 86/156 (55%), Positives = 124/156 (79%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G+ + +L+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG
Sbjct: 1 MEKVPMTAEGYRVLDDQLKQLKSVERPSVIAAISEAREHGDLSENAEYHAAKERQGWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AE+E+ I+RA+VID+S +SG ++ FGATV++V++++ D+ YQIVG+ EADV+ G VS
Sbjct: 61 QIAEIEDKISRAQVIDVSKLSGSQVKFGATVTVVDEDTEDEARYQIVGEHEADVKKGKVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIARA+I KE+GD++ VN PGG K YEIL+V W
Sbjct: 121 IASPIARAMISKEVGDVVEVNTPGGVKAYEILKVEW 156
>gi|94676760|ref|YP_589063.1| transcription elongation factor GreA [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
gi|123384107|sp|Q1LSK1|GREA_BAUCH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|94219910|gb|ABF14069.1| transcription elongation factor GreA [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
Length = 158
Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +++++EL + + RP II+ I+EAR YGDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGAEQLREELNYLKNVRRPEIIRNIAEAREYGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A++ID++ + ++ FG TVS+ N +++ Y+IVGD EA+ + L+
Sbjct: 61 RIQEIESKLSHAQIIDVTKLFPSGKVVFGVTVSVQNLNINEEQTYRIVGDDEANFKHNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIAR LIGK+ GDI+ + P GE Y+IL++ ++
Sbjct: 121 SISSPIARGLIGKKKGDIVLIKTPRGEVKYQILKIEYL 158
>gi|37528357|ref|NP_931702.1| transcription elongation factor GreA [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36787795|emb|CAE16910.1| transcription elongation factor greA (transcript cleavage factor)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 158
Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G DK+++EL + + RP+II I+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGADKLREELDYLKNVRRPKIISDIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M G R+ FG TV+++ N+ +++ Y+IVGD EAD++ L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMPKGGRVIFGTTVTVLNVNTDEEQTYRIVGDDEADIKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D++ + PGGE YEIL+V +I
Sbjct: 121 SVNSPIARGLIGKEVDDVVIIKTPGGEVEYEILKVEYI 158
>gi|83719378|ref|YP_443292.1| transcription elongation factor GreA [Burkholderia thailandensis
E264]
gi|167582309|ref|ZP_02375183.1| transcription elongation factor GreA [Burkholderia thailandensis
TXDOH]
gi|167620406|ref|ZP_02389037.1| transcription elongation factor GreA [Burkholderia thailandensis
Bt4]
gi|257139528|ref|ZP_05587790.1| transcription elongation factor GreA [Burkholderia thailandensis
E264]
gi|83653203|gb|ABC37266.1| transcription elongation factor GreA [Burkholderia thailandensis
E264]
Length = 158
Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ ++ A++ID + + D R+ F ATV L + +GD YQIVGD EAD+ GL+
Sbjct: 61 RIAEIESKLSAAQIIDPTAVDADGRVVFAATVELEDLETGDTVKYQIVGDDEADLDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V AP G + YEI+ VL+I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVLYI 158
>gi|254468129|ref|ZP_05081535.1| GreA/GreB family elongation factor [beta proteobacterium KB13]
gi|207086939|gb|EDZ64222.1| GreA/GreB family elongation factor [beta proteobacterium KB13]
Length = 159
Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats.
Identities = 79/159 (49%), Positives = 115/159 (72%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +IP+T G +++++EL + ++RP II+AI+EARA GDLSENAEY++AKE Q E
Sbjct: 1 MAGQIPMTRNGVERLKEELHQLKSQDRPNIIQAIAEARAQGDLSENAEYESAKERQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+AE+E ++ ++ID S ++ D + FGAT+ L + + YQIVG+ EAD+++
Sbjct: 61 GRIAEIEAKLSNVQIIDPSVLNADGKCVFGATIELEDLDEEKSFTYQIVGEDEADIKANK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SISSP+ARALIGKE GD++ V PGG+KTYEI V +I
Sbjct: 121 ISISSPLARALIGKEDGDVVEVETPGGQKTYEITNVSYI 159
>gi|56695227|ref|YP_165575.1| transcription elongation factor GreA [Ruegeria pomeroyi DSS-3]
gi|81350946|sp|Q5LXA4|GREA_SILPO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|56676964|gb|AAV93630.1| transcription elongation factor GreA [Ruegeria pomeroyi DSS-3]
Length = 156
Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats.
Identities = 81/156 (51%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GF ++ EL+ + ERP IIKAI+EAR +GDLSENAEY +A+E Q+ EG
Sbjct: 1 MEKIPMTPSGFAALEAELKQLKSVERPAIIKAIAEAREHGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +++ A+VID + +SG I FGA V+LV++++ ++K +QIVG+ EA+++ GL++
Sbjct: 61 RIKELEGVLSLADVIDPTKLSG-AIKFGARVTLVDEDTDEEKTWQIVGEHEANIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGK+ GD + V PGG+K+YEIL + +
Sbjct: 120 IKSPIARALIGKDEGDSVEVKTPGGQKSYEILSIEY 155
>gi|315634153|ref|ZP_07889442.1| transcription elongation factor GreA [Aggregatibacter segnis ATCC
33393]
gi|315477403|gb|EFU68146.1| transcription elongation factor GreA [Aggregatibacter segnis ATCC
33393]
Length = 158
Score = 183 bits (464), Expect = 9e-45, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQQIPMTVRGAQLLREELDYLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + ++VID++ + + ++ FGATV L N+ ++ Y+IVGD EAD+++GL+
Sbjct: 61 RIQEIEGKLGNSQVIDVTKIPNNGKVIFGATVVLFNTNTDEEVTYRIVGDDEADIKNGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKE+ D++++ PGG +EI++V ++
Sbjct: 121 SVNSPIARGLVGKEVDDVVNITTPGGVVEFEIIEVEYV 158
>gi|49475893|ref|YP_033934.1| transcription elongation factor GreA [Bartonella henselae str.
Houston-1]
gi|81647735|sp|Q6G2M7|GREA_BARHE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|49238701|emb|CAF27953.1| Transcription elongation factor greA [Bartonella henselae str.
Houston-1]
Length = 157
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 103/157 (65%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQEERPRII+AISEARA+GDLS NAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQEERPRIIEAISEARAHGDLSGNAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVI++S +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV++G +S
Sbjct: 61 RINELEDYIARAEVINVSRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKTGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIEVQYI 157
>gi|16273242|ref|NP_439483.1| transcription elongation factor GreA [Haemophilus influenzae Rd
KW20]
gi|260581322|ref|ZP_05849138.1| transcription elongation factor GreB [Haemophilus influenzae RdAW]
gi|1170015|sp|P43881|GREA_HAEIN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|1574790|gb|AAC22976.1| transcription elongation factor (greA) [Haemophilus influenzae Rd
KW20]
gi|260091989|gb|EEW75936.1| transcription elongation factor GreB [Haemophilus influenzae RdAW]
Length = 158
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A++ID+S M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+
Sbjct: 61 RIQEIEGKLGNAQIIDVSKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158
>gi|71906579|ref|YP_284166.1| transcription elongation factor GreA [Dechloromonas aromatica RCB]
gi|71846200|gb|AAZ45696.1| GreA/GreB family elongation factor [Dechloromonas aromatica RCB]
Length = 172
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T G +K+++EL + +RP +I AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 15 MSKVPLTVAGAEKLREELHRLKTVDRPWVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 74
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A++ID + D R FGATV + +++SG YQIVG+ EAD+++G +
Sbjct: 75 RIQEVEGKLSNAQIIDPKLLDADGRCVFGATVQMEDQDSGAGATYQIVGEDEADIKAGKI 134
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SP+ARALIGK GDI V APGG + YEI+ V +
Sbjct: 135 SVNSPMARALIGKYAGDIAQVQAPGGIREYEIIDVRY 171
>gi|283788181|ref|YP_003368046.1| transcription elongation factor [Citrobacter rodentium ICC168]
gi|282951635|emb|CBG91335.1| transcription elongation factor [Citrobacter rodentium ICC168]
Length = 158
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPLTLRGAEKLREELDFLKTVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ M + R+ FGATV+++ +S +++ ++IVGD EAD + L+
Sbjct: 61 RINDIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDSDEEQTWRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++ + PGGE YEI +V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGEVEYEITKVEYL 158
>gi|253686964|ref|YP_003016154.1| transcription elongation factor GreA [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251753542|gb|ACT11618.1| transcription elongation factor GreA [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 158
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIQDIEAKLSNAQVIDVTKMTANGRVIFGATVTVMNLDNEEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++ + PGG+ YEIL+V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIRTPGGDVEYEILKVEYL 158
>gi|329114165|ref|ZP_08242927.1| Transcription elongation factor GreA [Acetobacter pomorum DM001]
gi|326696241|gb|EGE47920.1| Transcription elongation factor GreA [Acetobacter pomorum DM001]
Length = 157
Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats.
Identities = 86/157 (54%), Positives = 122/157 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T KG +++ ELR + EERP +I+AI+EAR++GDLSENAEY AA+E Q+ EG
Sbjct: 1 MQKTPMTGKGLLQLEDELRKLKAEERPAVIRAIAEARSHGDLSENAEYHAARERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ AEVI+ +++SG ++ FGATV LV++++ + YQIVG EAD++ +S
Sbjct: 61 RILELEELISTAEVIEPTSLSGKQVKFGATVCLVDEDTDKEITYQIVGLHEADIKQHRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSP+A+ALIGKE GD +SV APGG++TYEIL V +I
Sbjct: 121 ISSPLAKALIGKEEGDTVSVPAPGGDRTYEILSVKFI 157
>gi|254197614|ref|ZP_04904036.1| transcription elongation factor GreA [Burkholderia pseudomallei
S13]
gi|169654355|gb|EDS87048.1| transcription elongation factor GreA [Burkholderia pseudomallei
S13]
Length = 158
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G D+++ EL+ + ERP II AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGADQLRDELQRLKSVERPAIINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ ++ A++ID +T+ D R+ F +TV L + +G K YQIVGD EAD+ GL+
Sbjct: 61 RIAEIESKLSAAQIIDPATLDTDGRVVFSSTVELEDLETGAKVKYQIVGDDEADLDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V AP G + YEI+ V ++
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVQFV 158
>gi|56460087|ref|YP_155368.1| transcription elongation factor GreA [Idiomarina loihiensis L2TR]
gi|56179097|gb|AAV81819.1| Transcription elongation factor GreA [Idiomarina loihiensis L2TR]
Length = 158
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T G ++ EL+ + ERPRI++AI++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTEHGAQLLRDELKRLKTVERPRIVEAIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A++ID++ + + ++ FG+TV++ + ++ Y+IVGD EAD++S L+
Sbjct: 61 RIQEIESKLSNAQIIDVTKVPNNGKVIFGSTVTVYNTKTDEEVTYKIVGDDEADIKSNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIARALIGKE+ DI +V P GE YE++ V +
Sbjct: 121 SVNSPIARALIGKEIDDIATVTTPNGEVEYEVVAVQY 157
>gi|183600357|ref|ZP_02961850.1| hypothetical protein PROSTU_03920 [Providencia stuartii ATCC 25827]
gi|188020148|gb|EDU58188.1| hypothetical protein PROSTU_03920 [Providencia stuartii ATCC 25827]
Length = 158
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T G DK+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVLGADKLREELDYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A+VID++ M+ + R+ FGATV+++ ++ ++ Y+IVGD EAD++ L+
Sbjct: 61 RIQEIESKLSHAQVIDVTKMTNNGRVIFGATVTVLNVDTDEELTYRIVGDDEADIKINLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++++ PGG+ +EIL+V +I
Sbjct: 121 SVNSPIARGLIGKEQDDVVTIKTPGGDVEFEILKVEYI 158
>gi|157148750|ref|YP_001456069.1| transcription elongation factor GreA [Citrobacter koseri ATCC
BAA-895]
gi|157085955|gb|ABV15633.1| hypothetical protein CKO_04582 [Citrobacter koseri ATCC BAA-895]
Length = 158
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ ++IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDNDEEQTWRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKE D++++ PGGE YE+++V ++
Sbjct: 121 SVNSPIARGLVGKEQDDVVTIKTPGGEVEYEVIKVEYL 158
>gi|161506138|ref|YP_001573250.1| transcription elongation factor GreA [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160867485|gb|ABX24108.1| hypothetical protein SARI_04326 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 158
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDVTKMANNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++ + PGG+ YE+L+V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 158
>gi|259415108|ref|ZP_05739030.1| transcription elongation factor GreA [Silicibacter sp. TrichCH4B]
gi|259349018|gb|EEW60772.1| transcription elongation factor GreA [Silicibacter sp. TrichCH4B]
Length = 156
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 79/156 (50%), Positives = 122/156 (78%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T +GF ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MDKIPMTPQGFHALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +++ A+VID + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGVLSLADVIDPTKLSG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIARALIGKE GD + V PGG++ YEIL++++
Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGDRAYEILKIIY 155
>gi|53718991|ref|YP_107977.1| transcription elongation factor GreA [Burkholderia pseudomallei
K96243]
gi|53725562|ref|YP_102536.1| transcription elongation factor GreA [Burkholderia mallei ATCC
23344]
gi|67639733|ref|ZP_00438570.1| transcription elongation factor GreA [Burkholderia mallei GB8 horse
4]
gi|76811771|ref|YP_333015.1| transcription elongation factor GreA [Burkholderia pseudomallei
1710b]
gi|121601156|ref|YP_992619.1| transcription elongation factor GreA [Burkholderia mallei SAVP1]
gi|124384628|ref|YP_001026579.1| transcription elongation factor GreA [Burkholderia mallei NCTC
10229]
gi|126439860|ref|YP_001058521.1| transcription elongation factor GreA [Burkholderia pseudomallei
668]
gi|126448841|ref|YP_001080136.1| transcription elongation factor GreA [Burkholderia mallei NCTC
10247]
gi|126451730|ref|YP_001065781.1| transcription elongation factor GreA [Burkholderia pseudomallei
1106a]
gi|134282748|ref|ZP_01769451.1| transcription elongation factor GreA [Burkholderia pseudomallei
305]
gi|167002793|ref|ZP_02268583.1| transcription elongation factor GreA [Burkholderia mallei PRL-20]
gi|167719061|ref|ZP_02402297.1| transcription elongation factor GreA [Burkholderia pseudomallei
DM98]
gi|167738059|ref|ZP_02410833.1| transcription elongation factor GreA [Burkholderia pseudomallei 14]
gi|167815243|ref|ZP_02446923.1| transcription elongation factor GreA [Burkholderia pseudomallei 91]
gi|167823652|ref|ZP_02455123.1| transcription elongation factor GreA [Burkholderia pseudomallei 9]
gi|167845196|ref|ZP_02470704.1| transcription elongation factor GreA [Burkholderia pseudomallei
B7210]
gi|167893747|ref|ZP_02481149.1| transcription elongation factor GreA [Burkholderia pseudomallei
7894]
gi|167902197|ref|ZP_02489402.1| transcription elongation factor GreA [Burkholderia pseudomallei
NCTC 13177]
gi|167910439|ref|ZP_02497530.1| transcription elongation factor GreA [Burkholderia pseudomallei
112]
gi|167918464|ref|ZP_02505555.1| transcription elongation factor GreA [Burkholderia pseudomallei
BCC215]
gi|217423500|ref|ZP_03455001.1| transcription elongation factor GreA [Burkholderia pseudomallei
576]
gi|226196142|ref|ZP_03791727.1| transcription elongation factor GreA [Burkholderia pseudomallei
Pakistan 9]
gi|237811774|ref|YP_002896225.1| transcription elongation factor GreA [Burkholderia pseudomallei
MSHR346]
gi|242317287|ref|ZP_04816303.1| transcription elongation factor GreA [Burkholderia pseudomallei
1106b]
gi|254177940|ref|ZP_04884595.1| transcription elongation factor GreA [Burkholderia mallei ATCC
10399]
gi|254180206|ref|ZP_04886805.1| transcription elongation factor GreA [Burkholderia pseudomallei
1655]
gi|254188375|ref|ZP_04894886.1| transcription elongation factor GreA [Burkholderia pseudomallei
Pasteur 52237]
gi|254199447|ref|ZP_04905813.1| transcription elongation factor GreA [Burkholderia mallei FMH]
gi|254205760|ref|ZP_04912112.1| transcription elongation factor GreA [Burkholderia mallei JHU]
gi|254259727|ref|ZP_04950781.1| transcription elongation factor GreA [Burkholderia pseudomallei
1710a]
gi|254298040|ref|ZP_04965493.1| transcription elongation factor GreA [Burkholderia pseudomallei
406e]
gi|254358839|ref|ZP_04975112.1| transcription elongation factor GreA [Burkholderia mallei
2002721280]
gi|52209405|emb|CAH35350.1| transcription elongation factor [Burkholderia pseudomallei K96243]
gi|52428985|gb|AAU49578.1| transcription elongation factor GreA [Burkholderia mallei ATCC
23344]
gi|76581224|gb|ABA50699.1| transcription elongation factor GreA [Burkholderia pseudomallei
1710b]
gi|121229966|gb|ABM52484.1| transcription elongation factor GreA [Burkholderia mallei SAVP1]
gi|124292648|gb|ABN01917.1| transcription elongation factor GreA [Burkholderia mallei NCTC
10229]
gi|126219353|gb|ABN82859.1| transcription elongation factor GreA [Burkholderia pseudomallei
668]
gi|126225372|gb|ABN88912.1| transcription elongation factor GreA [Burkholderia pseudomallei
1106a]
gi|126241711|gb|ABO04804.1| transcription elongation factor GreA [Burkholderia mallei NCTC
10247]
gi|134245834|gb|EBA45925.1| transcription elongation factor GreA [Burkholderia pseudomallei
305]
gi|147749043|gb|EDK56117.1| transcription elongation factor GreA [Burkholderia mallei FMH]
gi|147753203|gb|EDK60268.1| transcription elongation factor GreA [Burkholderia mallei JHU]
gi|148027966|gb|EDK85987.1| transcription elongation factor GreA [Burkholderia mallei
2002721280]
gi|157807730|gb|EDO84900.1| transcription elongation factor GreA [Burkholderia pseudomallei
406e]
gi|157936054|gb|EDO91724.1| transcription elongation factor GreA [Burkholderia pseudomallei
Pasteur 52237]
gi|160698979|gb|EDP88949.1| transcription elongation factor GreA [Burkholderia mallei ATCC
10399]
gi|184210746|gb|EDU07789.1| transcription elongation factor GreA [Burkholderia pseudomallei
1655]
gi|217393358|gb|EEC33379.1| transcription elongation factor GreA [Burkholderia pseudomallei
576]
gi|225931728|gb|EEH27730.1| transcription elongation factor GreA [Burkholderia pseudomallei
Pakistan 9]
gi|237503724|gb|ACQ96042.1| transcription elongation factor GreA [Burkholderia pseudomallei
MSHR346]
gi|238520332|gb|EEP83793.1| transcription elongation factor GreA [Burkholderia mallei GB8 horse
4]
gi|242140526|gb|EES26928.1| transcription elongation factor GreA [Burkholderia pseudomallei
1106b]
gi|243061554|gb|EES43740.1| transcription elongation factor GreA [Burkholderia mallei PRL-20]
gi|254218416|gb|EET07800.1| transcription elongation factor GreA [Burkholderia pseudomallei
1710a]
Length = 158
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ ++ A++ID +T+ D R+ F +TV L + +G K YQIVGD EAD+ GL+
Sbjct: 61 RIAEIESKLSAAQIIDPATLDTDGRVVFSSTVELEDLETGAKVKYQIVGDDEADLDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V AP G + YEI+ V ++
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVQFV 158
>gi|260431555|ref|ZP_05785526.1| transcription elongation factor GreA [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415383|gb|EEX08642.1| transcription elongation factor GreA [Silicibacter lacuscaerulensis
ITI-1157]
Length = 156
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 78/156 (50%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GF ++ EL+ + ERP II+AI+ AR GDL ENAEY +A+E Q EG
Sbjct: 1 MEKIPMTPAGFAALEAELKQLKSVERPAIIEAIASARELGDLKENAEYHSAREKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +++ AEVID + +SG I FGA V+LV++++ ++K +QIVG+ EA+++ GL++
Sbjct: 61 RIKELEGVLSLAEVIDPTKLSG-AIKFGAKVTLVDEDTDEEKTWQIVGEHEANIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGKE GD + V PGG ++YE+L + +
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGVRSYEVLSIHY 155
>gi|296104892|ref|YP_003615038.1| transcription elongation factor GreA [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059351|gb|ADF64089.1| transcription elongation factor GreA [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 158
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++++ PGGE YEI++V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVTIRTPGGEVEYEIIKVEYL 158
>gi|229845154|ref|ZP_04465289.1| transcription elongation factor GreA [Haemophilus influenzae
6P18H1]
gi|229811990|gb|EEP47684.1| transcription elongation factor GreA [Haemophilus influenzae
6P18H1]
Length = 158
Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A++ID++ M + ++ FGATV LV ++ ++ Y+IVGD EAD++SGL+
Sbjct: 61 RIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTDTDEEVTYRIVGDDEADIKSGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158
>gi|160900362|ref|YP_001565944.1| transcription elongation factor GreA [Delftia acidovorans SPH-1]
gi|160365946|gb|ABX37559.1| transcription elongation factor GreA [Delftia acidovorans SPH-1]
Length = 158
Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats.
Identities = 85/158 (53%), Positives = 120/158 (75%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K++ EL + ERP II+AI+EARA GDLSENAEY+AAK+ Q EG
Sbjct: 1 MATIPITKRGAEKLKDELHRLKTVERPSIIQAIAEARAQGDLSENAEYEAAKDRQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ ++ A++ID S++ G R+ FGATV L +++SGD YQIVG+ EAD++ GL+
Sbjct: 61 RIAEVESKLSAAQIIDPSSVDAGGRVVFGATVELEDEDSGDTVKYQIVGEDEADLKLGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++SSPIARALIGKE GD V APGGE+ YE++ V ++
Sbjct: 121 NVSSPIARALIGKEEGDTAVVQAPGGERRYEVVSVRYL 158
>gi|295097667|emb|CBK86757.1| transcription elongation factor GreA [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 158
Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDNDEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++++ PGGE YEI++V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVTIRTPGGEVEYEIIKVEYL 158
>gi|311277845|ref|YP_003940076.1| transcription elongation factor GreA [Enterobacter cloacae SCF1]
gi|308747040|gb|ADO46792.1| transcription elongation factor GreA [Enterobacter cloacae SCF1]
Length = 158
Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G DK+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGADKLREELEYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VIDIS M + R+ FG+TV+++ +S ++++Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDISKMPNNGRVIFGSTVTVLNLDSDEEQSYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKE D++++ PGGE YEI++V ++
Sbjct: 121 SVNSPIARGLVGKEQDDVVTIRTPGGEVEYEIVKVDYL 158
>gi|146338409|ref|YP_001203457.1| transcription elongation factor GreA [Bradyrhizobium sp. ORS278]
gi|146191215|emb|CAL75220.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Bradyrhizobium sp. ORS278]
Length = 188
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 87/157 (55%), Positives = 126/157 (80%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T+ G+ ++ EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 31 MVEKVPMTAGGYAALENELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 90
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA++ID++ +SGD I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 91 GRIAELEDKLARADIIDVAKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEVEADAKKGKI 150
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK++G + V APGG K+YEI +V W
Sbjct: 151 SITSPLARALIGKKMGTTVEVMAPGGAKSYEIAKVEW 187
>gi|307730495|ref|YP_003907719.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
gi|307585030|gb|ADN58428.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
Length = 158
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 87/158 (55%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ + A+VID S + D R+ FGATV L + +SG YQIVGD EAD+ GL+
Sbjct: 61 RIAEIESKLAGAQVIDPSQVEADGRVVFGATVELEDLDSGASVKYQIVGDDEADIDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ SV APGG + YEI+ V ++
Sbjct: 121 SISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158
>gi|68250001|ref|YP_249113.1| transcription elongation factor GreA [Haemophilus influenzae
86-028NP]
gi|145629417|ref|ZP_01785215.1| transcription elongation factor GreA [Haemophilus influenzae
22.1-21]
gi|145630776|ref|ZP_01786554.1| transcription elongation factor GreA [Haemophilus influenzae R3021]
gi|145634950|ref|ZP_01790657.1| transcription elongation factor GreA [Haemophilus influenzae
PittAA]
gi|145636182|ref|ZP_01791852.1| transcription elongation factor GreA [Haemophilus influenzae
PittHH]
gi|145638911|ref|ZP_01794519.1| transcription elongation factor GreA [Haemophilus influenzae
PittII]
gi|148826011|ref|YP_001290764.1| transcription elongation factor GreA [Haemophilus influenzae
PittEE]
gi|148826969|ref|YP_001291722.1| transcription elongation factor GreA [Haemophilus influenzae
PittGG]
gi|229847491|ref|ZP_04467588.1| transcription elongation factor GreA [Haemophilus influenzae
7P49H1]
gi|260582445|ref|ZP_05850236.1| transcription elongation factor GreB [Haemophilus influenzae NT127]
gi|319776271|ref|YP_004138759.1| transcription elongation factor [Haemophilus influenzae F3047]
gi|68058200|gb|AAX88453.1| transcription elongation factor GreA [Haemophilus influenzae
86-028NP]
gi|144978260|gb|EDJ88024.1| transcription elongation factor GreA [Haemophilus influenzae
22.1-21]
gi|144983658|gb|EDJ91118.1| transcription elongation factor GreA [Haemophilus influenzae R3021]
gi|145267816|gb|EDK07813.1| transcription elongation factor GreA [Haemophilus influenzae
PittAA]
gi|145270704|gb|EDK10637.1| transcription elongation factor GreA [Haemophilus influenzae
PittHH]
gi|145271883|gb|EDK11792.1| transcription elongation factor GreA [Haemophilus influenzae
PittII]
gi|148716171|gb|ABQ98381.1| transcription elongation factor GreA [Haemophilus influenzae
PittEE]
gi|148718211|gb|ABQ99338.1| transcription elongation factor GreA [Haemophilus influenzae
PittGG]
gi|229809632|gb|EEP45359.1| transcription elongation factor GreA [Haemophilus influenzae
7P49H1]
gi|260094425|gb|EEW78322.1| transcription elongation factor GreB [Haemophilus influenzae NT127]
gi|309750885|gb|ADO80869.1| Transcription elongation factor GreA [Haemophilus influenzae R2866]
gi|309973148|gb|ADO96349.1| Transcription elongation factor GreA [Haemophilus influenzae R2846]
gi|317450862|emb|CBY87086.1| transcription elongation factor [Haemophilus influenzae F3047]
Length = 158
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+
Sbjct: 61 RIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158
>gi|224372408|ref|YP_002606780.1| transcription elongation factor GreA [Nautilia profundicola AmH]
gi|254799565|sp|B9L822|GREA_NAUPA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|223589756|gb|ACM93492.1| transcription elongation factor grea transcript cleavage factorgrea
[Nautilia profundicola AmH]
Length = 162
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/156 (46%), Positives = 107/156 (68%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T G++K+ +EL + + RP + K I AR GDL ENAEY AAKE Q+ E
Sbjct: 1 MHKEPMTKYGYEKLSKELEYLKTTARPEVAKEIDSARELGDLKENAEYHAAKEKQSHIER 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL +I++RA V+D + +R+AFG+TV L++ ++ +K+ Y IVG EA+ GL+S
Sbjct: 61 RIAELSDILSRAVVVDPKEHAHNRVAFGSTVYLIDVDTDEKEKYTIVGAPEANPDKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A+ALIGKE+GD + VN PGG K YEI ++ +
Sbjct: 121 YHSPLAKALIGKEVGDEVEVNLPGGVKVYEIDKICY 156
>gi|271499165|ref|YP_003332190.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
gi|270342720|gb|ACZ75485.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
Length = 158
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQFPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M+ + R+ FGA V+++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMAANGRVIFGAMVTVMNLDTEEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D+++++ PGG YEIL+V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVTISTPGGVVEYEILKVEYL 158
>gi|188580289|ref|YP_001923734.1| transcription elongation factor GreA [Methylobacterium populi
BJ001]
gi|179343787|gb|ACB79199.1| transcription elongation factor GreA [Methylobacterium populi
BJ001]
Length = 160
Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats.
Identities = 95/155 (61%), Positives = 126/155 (81%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
DK+P+T++G+ +++EL+ RQQ ERPRII+AISEARA GDLSENAEY AAKE Q+ NEGR
Sbjct: 4 DKLPITARGYAALEEELKQRQQVERPRIIQAISEARALGDLSENAEYHAAKEAQSHNEGR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE++I RAE+ID S +SG +I FGA V LV++++ ++K YQ+VG+ EADV+ G VSI
Sbjct: 64 VLELESMIARAEIIDTSKLSGSKIKFGARVKLVDEDTEEEKTYQLVGEPEADVREGRVSI 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SSPIARALIGK +GD + V PGG K+YE++ V W
Sbjct: 124 SSPIARALIGKAVGDTVEVTTPGGGKSYEVVAVEW 158
>gi|319898512|ref|YP_004158605.1| transcription elongation factor GreA [Bartonella clarridgeiae 73]
gi|319402476|emb|CBI76019.1| transcription elongation factor GreA [Bartonella clarridgeiae 73]
Length = 157
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 102/157 (64%), Positives = 138/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVI++S +SGDRI FGAT++L+++ + ++K YQIVGDQEADV++G +S
Sbjct: 61 RINELEDYIARAEVINVSRLSGDRIKFGATINLLDEETEERKVYQIVGDQEADVKTGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG + YEI+++ +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGARNYEIIKIQYI 157
>gi|52425016|ref|YP_088153.1| transcription elongation factor GreA [Mannheimia succiniciproducens
MBEL55E]
gi|52307068|gb|AAU37568.1| GreA protein [Mannheimia succiniciproducens MBEL55E]
Length = 158
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G + ++QEL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGAELLKQELDFLKTTRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ ++ID++ + + ++ FGATV LV + D+ YQIVGD EAD++SGL+
Sbjct: 61 RIQEIESKLSNCQIIDVTKLPNNGKVIFGATVVLVNTENDDEVTYQIVGDDEADIKSGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ + +S+ PGG+ ++I++V +I
Sbjct: 121 SVNSPIARGLIGKEVDETVSIVVPGGKVEFDIIEVNYI 158
>gi|152972105|ref|YP_001337251.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238896688|ref|YP_002921433.1| transcription elongation factor GreA [Klebsiella pneumoniae
NTUH-K2044]
gi|262042740|ref|ZP_06015894.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|329997717|ref|ZP_08302900.1| transcription elongation factor GreA [Klebsiella sp. MS 92-3]
gi|150956954|gb|ABR78984.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238549015|dbj|BAH65366.1| transcription elongation factor [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259039965|gb|EEW41082.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328538926|gb|EGF64984.1| transcription elongation factor GreA [Klebsiella sp. MS 92-3]
Length = 158
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++++ PGGE YEI +V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVTIRTPGGEVEYEITKVEYL 158
>gi|167648248|ref|YP_001685911.1| transcription elongation factor GreA [Caulobacter sp. K31]
gi|189042240|sp|B0SZ84|GREA_CAUSK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|167350678|gb|ABZ73413.1| transcription elongation factor GreA [Caulobacter sp. K31]
Length = 157
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 85/157 (54%), Positives = 124/157 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ G+ + +EL+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG
Sbjct: 1 MEKVPMTAGGYQTLDEELKRLKTIERPAVIAAISEARQHGDLSENAEYHAAKERQGWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AE+E+ I RA+VID+S +SG ++ FGATVS+V++++ ++ YQIVGD EADV+ G +S
Sbjct: 61 RIAEIEDKIARAQVIDVSKLSGKQVKFGATVSVVDEDTEEESRYQIVGDHEADVKEGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SSP++RA+IGKE+G+++ V PGG K YEIL+V W+
Sbjct: 121 LSSPLSRAMIGKEVGEVVEVYTPGGVKAYEILKVEWV 157
>gi|253991511|ref|YP_003042867.1| transcription elongation factor GreA [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|211638389|emb|CAR67011.1| transcription elongation factor grea (transcript cleavage facto
grea) [Photorhabdus asymbiotica subsp. asymbiotica ATCC
43949]
gi|253782961|emb|CAQ86126.1| transcription elongation factor grea (transcript cleavage facto
grea) [Photorhabdus asymbiotica]
Length = 158
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 77/158 (48%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G DK+++EL + + RP+II I+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGADKLREELDYLKNVRRPKIISDIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M R+ FGATV+ + N+ +++ Y+IVGD EAD++ L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMPKTGRVIFGATVTALNVNTDEEQTYRIVGDDEADIKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ DI+++ PGGE YEIL+V +I
Sbjct: 121 SVNSPIARGLIGKEVDDIVTIKTPGGEVEYEILKVEYI 158
>gi|149194430|ref|ZP_01871527.1| transcription elongation factor GreA [Caminibacter mediatlanticus
TB-2]
gi|149135605|gb|EDM24084.1| transcription elongation factor GreA [Caminibacter mediatlanticus
TB-2]
Length = 162
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/154 (47%), Positives = 103/154 (66%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T G++K+ +EL + + RP + K I AR GDL ENAEY AAKE Q E R+
Sbjct: 2 KEPMTKYGYEKLSKELEYLKTVARPEVAKEIDAARELGDLKENAEYHAAKEKQAHIERRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL +I++RA V+D + DR++FG+TV LV+ +S ++ Y IVG EAD GL+S +
Sbjct: 62 AELSDILSRAVVVDPKEHAHDRVSFGSTVYLVDLDSDEEFKYTIVGAPEADPDKGLISYN 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A+ALIGK +GD + VN P G K YEI ++ +
Sbjct: 122 SPLAKALIGKHVGDEVEVNLPSGTKYYEIEKICF 155
>gi|237730101|ref|ZP_04560582.1| transcription elongation factor GreA [Citrobacter sp. 30_2]
gi|283836273|ref|ZP_06356014.1| transcription elongation factor GreA [Citrobacter youngae ATCC
29220]
gi|226908707|gb|EEH94625.1| transcription elongation factor GreA [Citrobacter sp. 30_2]
gi|291067636|gb|EFE05745.1| transcription elongation factor GreA [Citrobacter youngae ATCC
29220]
Length = 158
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ ++IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDNDEEQTWRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++ + PGGE YE+ +V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGEVEYEVTKVEYL 158
>gi|301170078|emb|CBW29682.1| transcription elongation factor [Haemophilus influenzae 10810]
Length = 158
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+
Sbjct: 61 RIQEIEAKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158
>gi|206577730|ref|YP_002236407.1| transcription elongation factor GreA [Klebsiella pneumoniae 342]
gi|288933391|ref|YP_003437450.1| transcription elongation factor GreA [Klebsiella variicola At-22]
gi|290511558|ref|ZP_06550927.1| transcription elongation factor GreA [Klebsiella sp. 1_1_55]
gi|206566788|gb|ACI08564.1| transcription elongation factor GreA [Klebsiella pneumoniae 342]
gi|288888120|gb|ADC56438.1| transcription elongation factor GreA [Klebsiella variicola At-22]
gi|289776551|gb|EFD84550.1| transcription elongation factor GreA [Klebsiella sp. 1_1_55]
Length = 158
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDYLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VIDI+ M + R+ FG+TVS++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++++ PGGE YEI +V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVTIRTPGGEVEYEITKVEYL 158
>gi|167836215|ref|ZP_02463098.1| transcription elongation factor GreA [Burkholderia thailandensis
MSMB43]
Length = 158
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ ++ A++ID + + D R+ F ATV L + +GD YQIVGD EAD+ GL+
Sbjct: 61 RIAEIESKLSAAQIIDPTVVDADGRVVFAATVELEDLETGDTVKYQIVGDDEADLDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V AP G + YEI+ VL+I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVLYI 158
>gi|167562359|ref|ZP_02355275.1| transcription elongation factor GreA [Burkholderia oklahomensis
EO147]
gi|167574344|ref|ZP_02367218.1| transcription elongation factor GreA [Burkholderia oklahomensis
C6786]
Length = 158
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G D+++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ ++ A++ID + + D R+ F ATV L + +G+ YQIVGD EAD+ GL+
Sbjct: 61 RIAEIESKLSAAQIIDPTAVDADGRVVFAATVELEDLETGNTVKYQIVGDDEADIDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V AP G + YEI+ VL+I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVLYI 158
>gi|226941818|ref|YP_002796892.1| GreA [Laribacter hongkongensis HLHK9]
gi|226716745|gb|ACO75883.1| GreA [Laribacter hongkongensis HLHK9]
Length = 158
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T G ++++ EL+ + RP +I AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MIKVPLTRFGAEQLKAELQQLKSVARPEVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE ++ A+VID + + D RI FGATV L++ + D+ YQIVGD EAD++ G V
Sbjct: 61 RIAELEGKLSNAQVIDPADLDADGRIVFGATVELLDLETEDEVGYQIVGDDEADIKLGKV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGKE GD + V APGG + YE+L V +I
Sbjct: 121 SVNSPIARALIGKEAGDTVEVMAPGGIREYEVLDVKYI 158
>gi|320174545|gb|EFW49681.1| Transcription elongation factor GreA [Shigella dysenteriae CDC
74-1112]
Length = 158
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQTIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++ + PGGE +E+++V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158
>gi|212709999|ref|ZP_03318127.1| hypothetical protein PROVALCAL_01050 [Providencia alcalifaciens DSM
30120]
gi|212687408|gb|EEB46936.1| hypothetical protein PROVALCAL_01050 [Providencia alcalifaciens DSM
30120]
Length = 158
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T G +K+++EL + + RP II +I+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVFGANKLREELEYLKSVRRPEIIASIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ ++VID++ M+ + R+ FGATVS++ ++ ++ Y+IVGD EAD++ L+
Sbjct: 61 RIQEIESKLSHSQVIDVTKMANNGRVIFGATVSVLNVDTDEELTYRIVGDDEADIKVNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKE+ D++++ PGG+ +EIL+V +I
Sbjct: 121 SVNSPIARGLVGKEVDDVVTIKTPGGDVEFEILKVEYI 158
>gi|75676634|ref|YP_319055.1| transcription elongation factor GreA [Nitrobacter winogradskyi
Nb-255]
gi|123773178|sp|Q3SPT8|GREA_NITWN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|74421504|gb|ABA05703.1| transcription elongation factor GreA [Nitrobacter winogradskyi
Nb-255]
Length = 158
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 89/157 (56%), Positives = 121/157 (77%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T G + EL+ RQ +RPRII+ I+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTRGGHAALADELKKRQSVDRPRIIEQIAEARAHGDLSENAEYHAAKEEQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA++ID+S +SGD I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 61 GRIAELEDKLARADIIDVSKLSGDTIKFGATVTLIDEDTDKKAVWQIVGEAEADAKQGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK+ G + V APGG K YEI +V W
Sbjct: 121 SITSPLARALIGKKKGSSVEVVAPGGAKAYEIAKVEW 157
>gi|46202225|ref|ZP_00053548.2| COG0782: Transcription elongation factor [Magnetospirillum
magnetotacticum MS-1]
Length = 152
Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats.
Identities = 82/151 (54%), Positives = 118/151 (78%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++++ELR + ER +I+AI+EAR +GDLSENAEY AA+E Q+ EGR++EL
Sbjct: 1 MTPAGLAQLEEELRTLKYVERQAVIRAIAEAREHGDLSENAEYHAARERQSFIEGRVSEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+II+RA VIDI+++SGD++ FGATV+L ++++ D+ Y IVG EAD++SG +S+ SP+
Sbjct: 61 EDIISRAHVIDIASLSGDQVRFGATVTLADEDTDDEVVYTIVGAHEADIKSGRMSVHSPL 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK LGD + V APGG K+YEI+ V +
Sbjct: 121 ARALIGKHLGDTVEVTAPGGSKSYEIVDVKF 151
>gi|291616001|ref|YP_003518743.1| GreA [Pantoea ananatis LMG 20103]
gi|291151031|gb|ADD75615.1| GreA [Pantoea ananatis LMG 20103]
gi|327396252|dbj|BAK13674.1| transcription elongation factor GreA [Pantoea ananatis AJ13355]
Length = 158
Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +++++EL + +RPRII +I+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGAERLREELHELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M R+ FGATV+++ ++ ++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVTVLNVDTDEEFTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR L+GKE D+ + PGG+ YEIL+V +I
Sbjct: 121 SVNSPMARGLVGKEADDVAIIKTPGGDVEYEILKVEYI 158
>gi|107022368|ref|YP_620695.1| transcription elongation factor GreA [Burkholderia cenocepacia AU
1054]
gi|116689315|ref|YP_834938.1| transcription elongation factor GreA [Burkholderia cenocepacia
HI2424]
gi|170732614|ref|YP_001764561.1| transcription elongation factor GreA [Burkholderia cenocepacia
MC0-3]
gi|206559640|ref|YP_002230401.1| transcription elongation factor GreA [Burkholderia cenocepacia
J2315]
gi|254245763|ref|ZP_04939084.1| Prokaryotic transcription elongation factor GreA [Burkholderia
cenocepacia PC184]
gi|254252705|ref|ZP_04946023.1| Prokaryotic transcription elongation factor GreA [Burkholderia
dolosa AUO158]
gi|105892557|gb|ABF75722.1| transcription elongation factor GreA [Burkholderia cenocepacia AU
1054]
gi|116647404|gb|ABK08045.1| transcription elongation factor GreA [Burkholderia cenocepacia
HI2424]
gi|124870539|gb|EAY62255.1| Prokaryotic transcription elongation factor GreA [Burkholderia
cenocepacia PC184]
gi|124895314|gb|EAY69194.1| Prokaryotic transcription elongation factor GreA [Burkholderia
dolosa AUO158]
gi|169815856|gb|ACA90439.1| transcription elongation factor GreA [Burkholderia cenocepacia
MC0-3]
gi|198035678|emb|CAR51565.1| transcription elongation factor [Burkholderia cenocepacia J2315]
gi|325525887|gb|EGD03598.1| transcription elongation factor GreA [Burkholderia sp. TJI49]
Length = 158
Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A++ID + + D R+ F ATV L + SGD YQIVGD EAD+ GL+
Sbjct: 61 RIAELESKLSAAQIIDPTVLDADGRVVFAATVELEDLESGDTVKYQIVGDDEADIDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158
>gi|293393162|ref|ZP_06637477.1| transcription elongation factor GreA [Serratia odorifera DSM 4582]
gi|291424308|gb|EFE97522.1| transcription elongation factor GreA [Serratia odorifera DSM 4582]
Length = 158
Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T G +K+++EL + + RP+II I+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTLFGAEKLREELEYLKSVRRPKIIADIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M R+ FG+TV+++ +S D+ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNTGRVIFGSTVTVMNLDSEDEVTYRIVGDDEADFKKNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR LIGKE D++ + PGG+ YEIL+V ++
Sbjct: 121 SVNSPMARGLIGKEQDDVVVIKTPGGDVDYEILKVEYL 158
>gi|83859439|ref|ZP_00952960.1| transcription elongation factor GreA [Oceanicaulis alexandrii
HTCC2633]
gi|83852886|gb|EAP90739.1| transcription elongation factor GreA [Oceanicaulis alexandrii
HTCC2633]
Length = 152
Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats.
Identities = 87/151 (57%), Positives = 118/151 (78%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G + +EL+ + ERP +I AISEAR +GDLSENAEY AAKE Q EGR+ EL
Sbjct: 1 MTAEGHKALDEELKHLKSVERPAVIAAISEAREHGDLSENAEYHAAKERQGWIEGRVQEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ I RA+VID+S MSG ++ FGATV++V++++ + Y+IVGD EADV+SG +S+SSPI
Sbjct: 61 EDKIARAQVIDVSKMSGTQVKFGATVTVVDEDTDQESTYKIVGDDEADVKSGKISLSSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARA+I KE GD++ VNAPGG K+YEIL+V W
Sbjct: 121 ARAMINKEEGDVVEVNAPGGVKSYEILKVEW 151
>gi|332290209|ref|YP_004421061.1| transcription elongation factor GreA [Gallibacterium anatis UMN179]
gi|330433105|gb|AEC18164.1| transcription elongation factor GreA [Gallibacterium anatis UMN179]
Length = 158
Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats.
Identities = 73/157 (46%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G + +++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQQIPMTVRGANLLREELDYLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A++ID++ ++ + R+ FGATV LV + D+ YQIVGD EAD++ GL+
Sbjct: 61 RIQEIEGKLSNAQIIDVTKITNNGRVIFGATVVLVNVETDDEVTYQIVGDDEADIKQGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIAR LIGKE+ D +++ PGG+ ++I+ V +
Sbjct: 121 SVNSPIARGLIGKEVDDNVTITTPGGKVEFDIISVEY 157
>gi|217976860|ref|YP_002361007.1| transcription elongation factor GreA [Methylocella silvestris BL2]
gi|217502236|gb|ACK49645.1| transcription elongation factor GreA [Methylocella silvestris BL2]
Length = 152
Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats.
Identities = 90/151 (59%), Positives = 125/151 (82%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G ++ EL+ RQQ ERPRII+AI+EAR++GDLSENAEY +AKE Q+LNEGR+AEL
Sbjct: 1 MTAAGHLALEDELKRRQQIERPRIIQAIAEARSHGDLSENAEYHSAKEAQSLNEGRIAEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ ++R+EVID+S +SG + FGATV+L+++++ +K YQIVG+ EADV+SG VSI+SP
Sbjct: 61 EDKLSRSEVIDVSKLSGATVMFGATVTLIDEDTEAEKTYQIVGETEADVKSGRVSITSPT 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK++GD + V PGG K+YEIL+V +
Sbjct: 121 ARALIGKKVGDTVEVTTPGGGKSYEILKVSF 151
>gi|218779092|ref|YP_002430410.1| transcription elongation factor GreA [Desulfatibacillum
alkenivorans AK-01]
gi|218760476|gb|ACL02942.1| transcription elongation factor GreA [Desulfatibacillum
alkenivorans AK-01]
Length = 155
Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats.
Identities = 71/155 (45%), Positives = 111/155 (71%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++ P+T +G +++Q EL + ERPR I+ I EARA+GDLSENAEY AAKE Q G
Sbjct: 1 MERTPITPEGLERLQNELVQLKTVERPRNIQDIEEARAHGDLSENAEYHAAKERQGFIAG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE + A+VID ST GD FGATV L ++G++ +YQ++G E+++Q+G +S
Sbjct: 61 RIAELEYKVASADVIDPSTQKGDTAVFGATVVLENIDTGEEVSYQLLGPDESNIQAGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
++SP+ +AL+GK+ GD + V PGG++ +E++++
Sbjct: 121 VTSPLGKALVGKKPGDEVKVQTPGGQRHFEVVEIQ 155
>gi|157368727|ref|YP_001476716.1| transcription elongation factor GreA [Serratia proteamaculans 568]
gi|157320491|gb|ABV39588.1| transcription elongation factor GreA [Serratia proteamaculans 568]
Length = 158
Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T G +K+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTLFGAEKLREELEYLKGVRRPKIIADIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M + R+ FG+TVS++ +S ++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGSTVSVMNLDSEEEVTYRIVGDDEADFKKNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR LIGKE+ D++ + PGG+ YEIL+V ++
Sbjct: 121 SVNSPMARGLIGKEVDDVVVIKTPGGDVDYEILKVDYL 158
>gi|295677142|ref|YP_003605666.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
gi|295436985|gb|ADG16155.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
Length = 160
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 87/158 (55%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG
Sbjct: 3 MSTIPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 62
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ + A+VID S + D R+ FGAT+ L + SG YQIVGD EAD+ GL+
Sbjct: 63 RIAEIESKLAGAQVIDPSQVEADGRVVFGATLELEDLESGASVKYQIVGDDEADIDHGLI 122
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ SV APGG + YEI+ V +I
Sbjct: 123 SISSPIARALIGKSEGDVASVQAPGGIREYEIIAVSYI 160
>gi|24114470|ref|NP_708980.1| transcription elongation factor GreA [Shigella flexneri 2a str.
301]
gi|26249764|ref|NP_755804.1| transcription elongation factor GreA [Escherichia coli CFT073]
gi|30064519|ref|NP_838690.1| transcription elongation factor GreA [Shigella flexneri 2a str.
2457T]
gi|38704147|ref|NP_312087.2| transcription elongation factor GreA [Escherichia coli O157:H7 str.
Sakai]
gi|89109944|ref|AP_003724.1| transcription elongation factor [Escherichia coli str. K-12 substr.
W3110]
gi|90111554|ref|NP_417648.4| transcript cleavage factor [Escherichia coli str. K-12 substr.
MG1655]
gi|91212603|ref|YP_542589.1| transcription elongation factor GreA [Escherichia coli UTI89]
gi|110643421|ref|YP_671151.1| transcription elongation factor GreA [Escherichia coli 536]
gi|110807047|ref|YP_690567.1| transcription elongation factor GreA [Shigella flexneri 5 str.
8401]
gi|117625475|ref|YP_858798.1| transcription elongation factor GreA [Escherichia coli APEC O1]
gi|157156605|ref|YP_001464656.1| transcription elongation factor GreA [Escherichia coli E24377A]
gi|157162664|ref|YP_001459982.1| transcription elongation factor GreA [Escherichia coli HS]
gi|161367516|ref|NP_289755.2| transcription elongation factor GreA [Escherichia coli O157:H7
EDL933]
gi|161950034|ref|YP_404844.2| transcription elongation factor GreA [Shigella dysenteriae Sd197]
gi|161984851|ref|YP_409528.2| transcription elongation factor GreA [Shigella boydii Sb227]
gi|161986440|ref|YP_312137.2| transcription elongation factor GreA [Shigella sonnei Ss046]
gi|168752874|ref|ZP_02777896.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4113]
gi|168754163|ref|ZP_02779170.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4401]
gi|168769037|ref|ZP_02794044.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4486]
gi|168781325|ref|ZP_02806332.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4076]
gi|168786067|ref|ZP_02811074.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC869]
gi|170018569|ref|YP_001723523.1| transcription elongation factor GreA [Escherichia coli ATCC 8739]
gi|170082716|ref|YP_001732036.1| transcription elongation factor [Escherichia coli str. K-12 substr.
DH10B]
gi|170683303|ref|YP_001745453.1| transcription elongation factor GreA [Escherichia coli SMS-3-5]
gi|187733737|ref|YP_001881904.1| transcription elongation factor GreA [Shigella boydii CDC 3083-94]
gi|194430233|ref|ZP_03062731.1| transcription elongation factor GreA [Escherichia coli B171]
gi|195938400|ref|ZP_03083782.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4024]
gi|208812520|ref|ZP_03253849.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4045]
gi|208818669|ref|ZP_03258989.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4042]
gi|209400428|ref|YP_002272651.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4115]
gi|209920656|ref|YP_002294740.1| transcription elongation factor GreA [Escherichia coli SE11]
gi|215488497|ref|YP_002330928.1| transcription elongation factor GreA [Escherichia coli O127:H6 str.
E2348/69]
gi|217326880|ref|ZP_03442963.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
TW14588]
gi|218550464|ref|YP_002384255.1| transcription elongation factor GreA [Escherichia fergusonii ATCC
35469]
gi|218555751|ref|YP_002388664.1| transcription elongation factor GreA [Escherichia coli IAI1]
gi|218560251|ref|YP_002393164.1| transcription elongation factor GreA [Escherichia coli S88]
gi|218691471|ref|YP_002399683.1| transcription elongation factor GreA [Escherichia coli ED1a]
gi|218696886|ref|YP_002404553.1| transcription elongation factor GreA [Escherichia coli 55989]
gi|218701950|ref|YP_002409579.1| transcription elongation factor GreA [Escherichia coli IAI39]
gi|218706801|ref|YP_002414320.1| transcription elongation factor GreA [Escherichia coli UMN026]
gi|227887902|ref|ZP_04005707.1| transcription elongation factor GreA [Escherichia coli 83972]
gi|237706067|ref|ZP_04536548.1| transcription elongation factor greA [Escherichia sp. 3_2_53FAA]
gi|238902283|ref|YP_002928079.1| transcription elongation factor [Escherichia coli BW2952]
gi|253771985|ref|YP_003034816.1| transcription elongation factor GreA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254038346|ref|ZP_04872404.1| transcription elongation factor GreA [Escherichia sp. 1_1_43]
gi|254163123|ref|YP_003046231.1| transcription elongation factor GreA [Escherichia coli B str.
REL606]
gi|254795130|ref|YP_003079967.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
TW14359]
gi|256018900|ref|ZP_05432765.1| transcription elongation factor GreA [Shigella sp. D9]
gi|256024244|ref|ZP_05438109.1| transcription elongation factor GreA [Escherichia sp. 4_1_40B]
gi|260845994|ref|YP_003223772.1| transcription elongation factor GreA [Escherichia coli O103:H2 str.
12009]
gi|260857308|ref|YP_003231199.1| transcription elongation factor GreA [Escherichia coli O26:H11 str.
11368]
gi|261228192|ref|ZP_05942473.1| transcription elongation factor [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255048|ref|ZP_05947581.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
FRIK966]
gi|291284555|ref|YP_003501373.1| Transcription elongation factor greA [Escherichia coli O55:H7 str.
CB9615]
gi|293406790|ref|ZP_06650716.1| transcription elongation factor greA [Escherichia coli FVEC1412]
gi|293412553|ref|ZP_06655276.1| transcription elongation factor greA [Escherichia coli B354]
gi|293416611|ref|ZP_06659250.1| transcription elongation factor greA [Escherichia coli B185]
gi|293449515|ref|ZP_06663936.1| transcription elongation factor greA [Escherichia coli B088]
gi|297519952|ref|ZP_06938338.1| transcription elongation factor GreA [Escherichia coli OP50]
gi|298382531|ref|ZP_06992128.1| transcription elongation factor greA [Escherichia coli FVEC1302]
gi|300817566|ref|ZP_07097782.1| transcription elongation factor GreA [Escherichia coli MS 107-1]
gi|300823855|ref|ZP_07103979.1| transcription elongation factor GreA [Escherichia coli MS 119-7]
gi|300897946|ref|ZP_07116324.1| transcription elongation factor GreA [Escherichia coli MS 198-1]
gi|300904368|ref|ZP_07122220.1| transcription elongation factor GreA [Escherichia coli MS 84-1]
gi|300926078|ref|ZP_07141897.1| transcription elongation factor GreA [Escherichia coli MS 182-1]
gi|300929873|ref|ZP_07145318.1| transcription elongation factor GreA [Escherichia coli MS 187-1]
gi|300938093|ref|ZP_07152870.1| transcription elongation factor GreA [Escherichia coli MS 21-1]
gi|300948832|ref|ZP_07162899.1| transcription elongation factor GreA [Escherichia coli MS 116-1]
gi|300955767|ref|ZP_07168111.1| transcription elongation factor GreA [Escherichia coli MS 175-1]
gi|300980086|ref|ZP_07174836.1| transcription elongation factor GreA [Escherichia coli MS 200-1]
gi|300990828|ref|ZP_07179355.1| transcription elongation factor GreA [Escherichia coli MS 45-1]
gi|301022036|ref|ZP_07185979.1| transcription elongation factor GreA [Escherichia coli MS 69-1]
gi|301047975|ref|ZP_07195018.1| transcription elongation factor GreA [Escherichia coli MS 185-1]
gi|301301761|ref|ZP_07207895.1| transcription elongation factor GreA [Escherichia coli MS 124-1]
gi|301326392|ref|ZP_07219750.1| transcription elongation factor GreA [Escherichia coli MS 78-1]
gi|301644892|ref|ZP_07244863.1| transcription elongation factor GreA [Escherichia coli MS 146-1]
gi|306816477|ref|ZP_07450609.1| transcription elongation factor GreA [Escherichia coli NC101]
gi|307139867|ref|ZP_07499223.1| transcription elongation factor GreA [Escherichia coli H736]
gi|307313114|ref|ZP_07592740.1| GreA/GreB family elongation factor [Escherichia coli W]
gi|309793759|ref|ZP_07688185.1| transcription elongation factor GreA [Escherichia coli MS 145-7]
gi|312968481|ref|ZP_07782690.1| transcription elongation factor GreA domain protein [Escherichia
coli 2362-75]
gi|312972545|ref|ZP_07786719.1| transcription elongation factor GreA domain protein [Escherichia
coli 1827-70]
gi|331643879|ref|ZP_08345010.1| transcription elongation factor GreA [Escherichia coli H736]
gi|331648981|ref|ZP_08350069.1| transcription elongation factor GreA [Escherichia coli M605]
gi|331654785|ref|ZP_08355785.1| transcription elongation factor GreA [Escherichia coli M718]
gi|331659468|ref|ZP_08360410.1| transcription elongation factor GreA [Escherichia coli TA206]
gi|331664793|ref|ZP_08365698.1| transcription elongation factor GreA [Escherichia coli TA143]
gi|331670008|ref|ZP_08370853.1| transcription elongation factor GreA [Escherichia coli TA271]
gi|331674713|ref|ZP_08375472.1| transcription elongation factor GreA [Escherichia coli TA280]
gi|331679260|ref|ZP_08379932.1| transcription elongation factor GreA [Escherichia coli H591]
gi|331684828|ref|ZP_08385420.1| transcription elongation factor GreA [Escherichia coli H299]
gi|332279988|ref|ZP_08392401.1| transcription elongation factor GreA [Shigella sp. D9]
gi|62288136|sp|P0A6W5|GREA_ECOLI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|62288137|sp|P0A6W6|GREA_ECOL6 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|62288138|sp|P0A6W7|GREA_ECO57 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|62288139|sp|P0A6W8|GREA_SHIFL RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|157831240|pdb|1GRJ|A Chain A, Grea Transcript Cleavage Factor From Escherichia Coli
gi|26110192|gb|AAN82378.1|AE016767_138 Transcription elongation factor greA [Escherichia coli CFT073]
gi|41611|emb|CAA38521.1| unnamed protein product [Escherichia coli K-12]
gi|746399|gb|AAA97506.1| transcription elongation factor [Escherichia coli]
gi|24053653|gb|AAN44687.1| transcription elongation factor [Shigella flexneri 2a str. 301]
gi|30042778|gb|AAP18501.1| transcription elongation factor [Shigella flexneri 2a str. 2457T]
gi|85675975|dbj|BAE77225.1| transcription elongation factor [Escherichia coli str. K12 substr.
W3110]
gi|87082225|gb|AAC76213.2| transcript cleavage factor [Escherichia coli str. K-12 substr.
MG1655]
gi|91074177|gb|ABE09058.1| transcription elongation factor GreA (transcript cleavage factor
GreA) [Escherichia coli UTI89]
gi|110345013|gb|ABG71250.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Escherichia coli 536]
gi|110616595|gb|ABF05262.1| transcription elongation factor [Shigella flexneri 5 str. 8401]
gi|115514599|gb|ABJ02674.1| transcription elongation factor GreA [Escherichia coli APEC O1]
gi|157068344|gb|ABV07599.1| transcription elongation factor GreA [Escherichia coli HS]
gi|157078635|gb|ABV18343.1| transcription elongation factor GreA [Escherichia coli E24377A]
gi|169753497|gb|ACA76196.1| transcription elongation factor GreA [Escherichia coli ATCC 8739]
gi|169890551|gb|ACB04258.1| transcription elongation factor [Escherichia coli str. K-12 substr.
DH10B]
gi|170521021|gb|ACB19199.1| transcription elongation factor GreA [Escherichia coli SMS-3-5]
gi|187430729|gb|ACD10003.1| transcription elongation factor GreA [Shigella boydii CDC 3083-94]
gi|188013493|gb|EDU51615.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4113]
gi|189001112|gb|EDU70098.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4076]
gi|189358744|gb|EDU77163.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4401]
gi|189361832|gb|EDU80251.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4486]
gi|189373995|gb|EDU92411.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC869]
gi|194411734|gb|EDX28058.1| transcription elongation factor GreA [Escherichia coli B171]
gi|208733797|gb|EDZ82484.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4045]
gi|208738792|gb|EDZ86474.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4042]
gi|209161828|gb|ACI39261.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC4115]
gi|209913915|dbj|BAG78989.1| transcription elongation factor [Escherichia coli SE11]
gi|215266569|emb|CAS11008.1| transcription elongation factor [Escherichia coli O127:H6 str.
E2348/69]
gi|217319247|gb|EEC27672.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
TW14588]
gi|218353618|emb|CAU99817.1| transcription elongation factor [Escherichia coli 55989]
gi|218358005|emb|CAQ90651.1| transcription elongation factor [Escherichia fergusonii ATCC 35469]
gi|218362519|emb|CAR00143.1| transcription elongation factor [Escherichia coli IAI1]
gi|218367020|emb|CAR04791.1| transcription elongation factor [Escherichia coli S88]
gi|218371936|emb|CAR19792.1| transcription elongation factor [Escherichia coli IAI39]
gi|218429035|emb|CAR09981.2| transcription elongation factor [Escherichia coli ED1a]
gi|218433898|emb|CAR14815.1| transcription elongation factor [Escherichia coli UMN026]
gi|222034898|emb|CAP77641.1| Transcription elongation factor greA [Escherichia coli LF82]
gi|226839970|gb|EEH71991.1| transcription elongation factor GreA [Escherichia sp. 1_1_43]
gi|226899107|gb|EEH85366.1| transcription elongation factor greA [Escherichia sp. 3_2_53FAA]
gi|227835298|gb|EEJ45764.1| transcription elongation factor GreA [Escherichia coli 83972]
gi|238863677|gb|ACR65675.1| transcription elongation factor [Escherichia coli BW2952]
gi|242378724|emb|CAQ33514.1| transcription elongation factor GreA [Escherichia coli BL21(DE3)]
gi|253323029|gb|ACT27631.1| transcription elongation factor GreA [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253975024|gb|ACT40695.1| transcription elongation factor GreA [Escherichia coli B str.
REL606]
gi|253979180|gb|ACT44850.1| transcription elongation factor GreA [Escherichia coli BL21(DE3)]
gi|254594530|gb|ACT73891.1| transcription elongation factor [Escherichia coli O157:H7 str.
TW14359]
gi|257755957|dbj|BAI27459.1| transcription elongation factor GreA [Escherichia coli O26:H11 str.
11368]
gi|257761141|dbj|BAI32638.1| transcription elongation factor GreA [Escherichia coli O103:H2 str.
12009]
gi|260447792|gb|ACX38214.1| transcription elongation factor GreA [Escherichia coli DH1]
gi|281180223|dbj|BAI56553.1| transcription elongation factor [Escherichia coli SE15]
gi|281602564|gb|ADA75548.1| Transcription elongation factor greA [Shigella flexneri 2002017]
gi|284923204|emb|CBG36298.1| transcription elongation factor [Escherichia coli 042]
gi|290764428|gb|ADD58389.1| Transcription elongation factor greA [Escherichia coli O55:H7 str.
CB9615]
gi|291322605|gb|EFE62034.1| transcription elongation factor greA [Escherichia coli B088]
gi|291426796|gb|EFE99828.1| transcription elongation factor greA [Escherichia coli FVEC1412]
gi|291431967|gb|EFF04950.1| transcription elongation factor greA [Escherichia coli B185]
gi|291469324|gb|EFF11815.1| transcription elongation factor greA [Escherichia coli B354]
gi|294491555|gb|ADE90311.1| transcription elongation factor GreA [Escherichia coli IHE3034]
gi|298277671|gb|EFI19187.1| transcription elongation factor greA [Escherichia coli FVEC1302]
gi|300300160|gb|EFJ56545.1| transcription elongation factor GreA [Escherichia coli MS 185-1]
gi|300307860|gb|EFJ62380.1| transcription elongation factor GreA [Escherichia coli MS 200-1]
gi|300317362|gb|EFJ67146.1| transcription elongation factor GreA [Escherichia coli MS 175-1]
gi|300358338|gb|EFJ74208.1| transcription elongation factor GreA [Escherichia coli MS 198-1]
gi|300397751|gb|EFJ81289.1| transcription elongation factor GreA [Escherichia coli MS 69-1]
gi|300403691|gb|EFJ87229.1| transcription elongation factor GreA [Escherichia coli MS 84-1]
gi|300407048|gb|EFJ90586.1| transcription elongation factor GreA [Escherichia coli MS 45-1]
gi|300417867|gb|EFK01178.1| transcription elongation factor GreA [Escherichia coli MS 182-1]
gi|300451688|gb|EFK15308.1| transcription elongation factor GreA [Escherichia coli MS 116-1]
gi|300456914|gb|EFK20407.1| transcription elongation factor GreA [Escherichia coli MS 21-1]
gi|300462206|gb|EFK25699.1| transcription elongation factor GreA [Escherichia coli MS 187-1]
gi|300523623|gb|EFK44692.1| transcription elongation factor GreA [Escherichia coli MS 119-7]
gi|300529864|gb|EFK50926.1| transcription elongation factor GreA [Escherichia coli MS 107-1]
gi|300842742|gb|EFK70502.1| transcription elongation factor GreA [Escherichia coli MS 124-1]
gi|300846911|gb|EFK74671.1| transcription elongation factor GreA [Escherichia coli MS 78-1]
gi|301076798|gb|EFK91604.1| transcription elongation factor GreA [Escherichia coli MS 146-1]
gi|305850042|gb|EFM50501.1| transcription elongation factor GreA [Escherichia coli NC101]
gi|306907025|gb|EFN37533.1| GreA/GreB family elongation factor [Escherichia coli W]
gi|307555275|gb|ADN48050.1| transcription elongation factor GreA [Escherichia coli ABU 83972]
gi|307625220|gb|ADN69524.1| transcription elongation factor GreA [Escherichia coli UM146]
gi|308122716|gb|EFO59978.1| transcription elongation factor GreA [Escherichia coli MS 145-7]
gi|309703607|emb|CBJ02947.1| transcription elongation factor [Escherichia coli ETEC H10407]
gi|310334922|gb|EFQ01127.1| transcription elongation factor GreA domain protein [Escherichia
coli 1827-70]
gi|312286699|gb|EFR14610.1| transcription elongation factor GreA domain protein [Escherichia
coli 2362-75]
gi|312947738|gb|ADR28565.1| transcription elongation factor GreA [Escherichia coli O83:H1 str.
NRG 857C]
gi|313648576|gb|EFS13018.1| transcription elongation factor GreA domain protein [Shigella
flexneri 2a str. 2457T]
gi|315062487|gb|ADT76814.1| transcription elongation factor [Escherichia coli W]
gi|315137767|dbj|BAJ44926.1| transcription elongation factor greA [Escherichia coli DH1]
gi|315257106|gb|EFU37074.1| transcription elongation factor GreA [Escherichia coli MS 85-1]
gi|315288955|gb|EFU48353.1| transcription elongation factor GreA [Escherichia coli MS 110-3]
gi|315294888|gb|EFU54227.1| transcription elongation factor GreA [Escherichia coli MS 153-1]
gi|315297888|gb|EFU57158.1| transcription elongation factor GreA [Escherichia coli MS 16-3]
gi|315617264|gb|EFU97873.1| transcription elongation factor GreA domain protein [Escherichia
coli 3431]
gi|320181456|gb|EFW56374.1| Transcription elongation factor GreA [Shigella boydii ATCC 9905]
gi|320186668|gb|EFW61392.1| Transcription elongation factor GreA [Shigella flexneri CDC 796-83]
gi|320189534|gb|EFW64193.1| Transcription elongation factor GreA [Escherichia coli O157:H7 str.
EC1212]
gi|320194666|gb|EFW69296.1| Transcription elongation factor GreA [Escherichia coli WV_060327]
gi|320202095|gb|EFW76670.1| Transcription elongation factor GreA [Escherichia coli EC4100B]
gi|320640252|gb|EFX09824.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
G5101]
gi|320645549|gb|EFX14558.1| transcription elongation factor GreA [Escherichia coli O157:H- str.
493-89]
gi|320650859|gb|EFX19316.1| transcription elongation factor GreA [Escherichia coli O157:H- str.
H 2687]
gi|320656240|gb|EFX24152.1| transcription elongation factor GreA [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320661930|gb|EFX29338.1| transcription elongation factor GreA [Escherichia coli O55:H7 str.
USDA 5905]
gi|320666765|gb|EFX33744.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
LSU-61]
gi|323162873|gb|EFZ48708.1| transcription elongation factor GreA domain protein [Escherichia
coli E128010]
gi|323165141|gb|EFZ50931.1| transcription elongation factor GreA domain protein [Shigella
sonnei 53G]
gi|323183135|gb|EFZ68533.1| transcription elongation factor GreA domain protein [Escherichia
coli 1357]
gi|323189198|gb|EFZ74482.1| transcription elongation factor GreA domain protein [Escherichia
coli RN587/1]
gi|323376925|gb|ADX49193.1| transcription elongation factor GreA [Escherichia coli KO11]
gi|323936125|gb|EGB32419.1| transcription elongation protein GreA [Escherichia coli E1520]
gi|323941719|gb|EGB37898.1| transcription elongation proteinGreA [Escherichia coli E482]
gi|323946965|gb|EGB42981.1| transcription elongation protein GreA [Escherichia coli H120]
gi|323951300|gb|EGB47175.1| transcription elongation proteinGreA [Escherichia coli H252]
gi|323957672|gb|EGB53386.1| transcription elongation proteinGreA [Escherichia coli H263]
gi|323961164|gb|EGB56778.1| transcription elongation proteinGreA [Escherichia coli H489]
gi|323966361|gb|EGB61795.1| transcription elongation proteinGreA [Escherichia coli M863]
gi|323970256|gb|EGB65527.1| transcription elongation proteinGreA [Escherichia coli TA007]
gi|323979102|gb|EGB74180.1| transcription elongation proteinGreA [Escherichia coli TW10509]
gi|324008752|gb|EGB77971.1| transcription elongation factor GreA [Escherichia coli MS 57-2]
gi|324012130|gb|EGB81349.1| transcription elongation factor GreA [Escherichia coli MS 60-1]
gi|324018294|gb|EGB87513.1| transcription elongation factor GreA [Escherichia coli MS 117-3]
gi|324115215|gb|EGC09179.1| transcription elongation proteinGreA [Escherichia fergusonii B253]
gi|324119546|gb|EGC13428.1| transcription elongation proteinGreA [Escherichia coli E1167]
gi|325498762|gb|EGC96621.1| transcription elongation factor GreA [Escherichia fergusonii
ECD227]
gi|326337881|gb|EGD61715.1| Transcription elongation factor GreA [Escherichia coli O157:H7 str.
1125]
gi|326347451|gb|EGD71176.1| Transcription elongation factor GreA [Escherichia coli O157:H7 str.
1044]
gi|330909235|gb|EGH37749.1| transcription elongation factor GreA [Escherichia coli AA86]
gi|331037350|gb|EGI09574.1| transcription elongation factor GreA [Escherichia coli H736]
gi|331042728|gb|EGI14870.1| transcription elongation factor GreA [Escherichia coli M605]
gi|331048167|gb|EGI20244.1| transcription elongation factor GreA [Escherichia coli M718]
gi|331054050|gb|EGI26079.1| transcription elongation factor GreA [Escherichia coli TA206]
gi|331058041|gb|EGI30023.1| transcription elongation factor GreA [Escherichia coli TA143]
gi|331062921|gb|EGI34835.1| transcription elongation factor GreA [Escherichia coli TA271]
gi|331068152|gb|EGI39548.1| transcription elongation factor GreA [Escherichia coli TA280]
gi|331073325|gb|EGI44648.1| transcription elongation factor GreA [Escherichia coli H591]
gi|331078443|gb|EGI49649.1| transcription elongation factor GreA [Escherichia coli H299]
gi|332086244|gb|EGI91402.1| transcription elongation factor GreA domain protein [Shigella
boydii 5216-82]
gi|332086457|gb|EGI91604.1| transcription elongation factor GreA domain protein [Shigella
dysenteriae 155-74]
gi|332090708|gb|EGI95802.1| transcription elongation factor GreA domain protein [Shigella
boydii 3594-74]
gi|332102340|gb|EGJ05686.1| transcription elongation factor GreA [Shigella sp. D9]
gi|332345137|gb|AEE58471.1| transcription elongation factor protein GreA [Escherichia coli
UMNK88]
gi|332752340|gb|EGJ82730.1| transcription elongation factor GreA domain protein [Shigella
flexneri 4343-70]
gi|332752866|gb|EGJ83251.1| transcription elongation factor GreA domain protein [Shigella
flexneri K-671]
gi|332754345|gb|EGJ84711.1| transcription elongation factor GreA domain protein [Shigella
flexneri 2747-71]
gi|332765177|gb|EGJ95404.1| transcription elongation factor GreA [Shigella flexneri 2930-71]
gi|332998823|gb|EGK18419.1| transcription elongation factor GreA domain protein [Shigella
flexneri VA-6]
gi|332999259|gb|EGK18845.1| transcription elongation factor GreA domain protein [Shigella
flexneri K-272]
gi|333000243|gb|EGK19826.1| transcription elongation factor GreA domain protein [Shigella
flexneri K-218]
gi|333014600|gb|EGK33947.1| transcription elongation factor GreA domain protein [Shigella
flexneri K-304]
gi|333014983|gb|EGK34327.1| transcription elongation factor GreA domain protein [Shigella
flexneri K-227]
Length = 158
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++ + PGGE +E+++V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158
>gi|52842830|ref|YP_096629.1| transcription elongation factor GreA [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|54295463|ref|YP_127878.1| transcription elongation factor GreA [Legionella pneumophila str.
Lens]
gi|54298613|ref|YP_124982.1| transcription elongation factor GreA [Legionella pneumophila str.
Paris]
gi|81367742|sp|Q5WTH5|GREA_LEGPL RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|81369784|sp|Q5X1R6|GREA_LEGPA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|81376728|sp|Q5ZS95|GREA_LEGPH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|52629941|gb|AAU28682.1| transcription elongation factor GreA [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|53752398|emb|CAH13830.1| transcription elongation factor GreA [Legionella pneumophila str.
Paris]
gi|53755295|emb|CAH16789.1| transcription elongation factor GreA [Legionella pneumophila str.
Lens]
Length = 160
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G + ++ EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEG
Sbjct: 1 MSKHPMTVEGAEALKAELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ +
Sbjct: 61 RIQELEAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SSPIARALIGKEL D ++V PGG YEI+QV +I
Sbjct: 121 SYSSPIARALIGKELDDAVTVETPGGMVEYEIIQVQYI 158
>gi|114799104|ref|YP_759372.1| transcription elongation factor GreA [Hyphomonas neptunium ATCC
15444]
gi|122942711|sp|Q0C4H1|GREA_HYPNA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|114739278|gb|ABI77403.1| transcription elongation factor GreA [Hyphomonas neptunium ATCC
15444]
Length = 157
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 80/156 (51%), Positives = 121/156 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T++G +Q EL+ + ERP II AISEAR++GDLSENAEY AAKE Q+ EG
Sbjct: 1 MERIPMTAEGHAALQAELKVLKSVERPSIIAAISEARSHGDLSENAEYHAAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++EL++ + RA+VID+S + G ++ FGATV++ + ++ D++ Y+IVG+ EADV+ G +S
Sbjct: 61 RISELDDKLARADVIDVSKLGGSKVRFGATVTIADVDTEDEQTYKIVGEDEADVKQGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++SPIARALIGKE GD V AP G + YE+++V++
Sbjct: 121 VTSPIARALIGKEEGDEAEVAAPAGARAYEVIKVVY 156
>gi|238755147|ref|ZP_04616493.1| Transcription elongation factor greA [Yersinia ruckeri ATCC 29473]
gi|238706594|gb|EEP98965.1| Transcription elongation factor greA [Yersinia ruckeri ATCC 29473]
Length = 158
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G D++++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTIRGADQLREELDYLKGVRRPKIIADIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M + R+ F +TV+++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFASTVTVLNLDTEEQQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D++ + PGG+ +EIL+V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGDVEFEILKVEYL 158
>gi|46203896|ref|ZP_00050819.2| COG0782: Transcription elongation factor [Magnetospirillum
magnetotacticum MS-1]
Length = 165
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 94/155 (60%), Positives = 126/155 (81%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
DK+P+T++G+ +++EL+ RQQ ERPRII+AISEARA GDLSENAEY AAKE Q+ NEGR
Sbjct: 9 DKLPITARGYAALEEELKRRQQVERPRIIQAISEARALGDLSENAEYHAAKEAQSHNEGR 68
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE++I RAE+ID S +SG +I FGA V LV++++ ++K YQ+VG+ EADV+ G VSI
Sbjct: 69 VLELESMIARAEIIDTSKLSGSKIKFGARVKLVDEDTEEEKTYQLVGEPEADVREGRVSI 128
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SSPIARALIGK +GD + V PGG K+YE++ + W
Sbjct: 129 SSPIARALIGKGVGDTVEVTTPGGGKSYEVVAIEW 163
>gi|188493925|ref|ZP_03001195.1| transcription elongation factor GreA [Escherichia coli 53638]
gi|188489124|gb|EDU64227.1| transcription elongation factor GreA [Escherichia coli 53638]
Length = 158
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSNEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++ + PGGE +E+++V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158
>gi|329123413|ref|ZP_08251977.1| transcription elongation factor GreA [Haemophilus aegyptius ATCC
11116]
gi|327470995|gb|EGF16450.1| transcription elongation factor GreA [Haemophilus aegyptius ATCC
11116]
Length = 158
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A++ID++ M + ++ FGATV LV N+ ++ Y IVGD EAD++SGL+
Sbjct: 61 RIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYGIVGDDEADIKSGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158
>gi|317493617|ref|ZP_07952038.1| transcription elongation factor GreA [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918560|gb|EFV39898.1| transcription elongation factor GreA [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 158
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +K+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGAEKLREELEYLKGTRRPQIIADIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A VID++ + R+ FG TVS+ ++ DK+ Y IVGD EAD + +
Sbjct: 61 RIQEIEAKLSNANVIDVTKIPNTGRVIFGCTVSVENLDTEDKQTYSIVGDDEADFKQNRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE GDI+ + PGGE +EIL+V +I
Sbjct: 121 SVNSPIARGLIGKEQGDIVVIKTPGGEVEFEILKVEYI 158
>gi|241763933|ref|ZP_04761975.1| transcription elongation factor GreA [Acidovorax delafieldii 2AN]
gi|241366756|gb|EER61197.1| transcription elongation factor GreA [Acidovorax delafieldii 2AN]
Length = 158
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 81/157 (51%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + ERP +I AI+EARA GDLSENA+Y AAK+ Q EG
Sbjct: 1 MATIPITKRGAEKLKEELHRLKTVERPAVITAIAEARAQGDLSENADYDAAKDRQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID ++ G ++ FGATV L +++SGD YQIVG+ EAD++ GL+
Sbjct: 61 RIQEIEGKLSVAQVIDPGSVDGGGKVVFGATVELEDEDSGDTVTYQIVGEDEADLKHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ISSPIARALIGKE GD V APGG + YE++ V +
Sbjct: 121 NISSPIARALIGKEEGDTAEVQAPGGVRRYEVVAVRY 157
>gi|241663320|ref|YP_002981680.1| transcription elongation factor GreA [Ralstonia pickettii 12D]
gi|309782465|ref|ZP_07677189.1| transcription elongation factor GreA [Ralstonia sp. 5_7_47FAA]
gi|240865347|gb|ACS63008.1| transcription elongation factor GreA [Ralstonia pickettii 12D]
gi|308918802|gb|EFP64475.1| transcription elongation factor GreA [Ralstonia sp. 5_7_47FAA]
Length = 158
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 80/158 (50%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G + +++EL + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EG
Sbjct: 1 MSTIPITKRGAEMLKEELHRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A++ID +++ D R+ FGAT+ L + +SG YQIVGD EAD+++G +
Sbjct: 61 RIQEIESKLSAAQIIDPASLDADGRVVFGATIDLEDLDSGKPVTYQIVGDDEADLETGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ +V APGGE+ YE+L V ++
Sbjct: 121 SISSPIARALIGKFEGDVATVVAPGGEREYEVLAVKYL 158
>gi|300718587|ref|YP_003743390.1| transcription elongation factor [Erwinia billingiae Eb661]
gi|299064423|emb|CAX61543.1| Transcription elongation factor [Erwinia billingiae Eb661]
Length = 158
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G DK+++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGADKLREELEELKTIKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M+ + R+ FG+TV ++ ++ ++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMNANGRVIFGSTVKVLNLDTDEESTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR LIGKE+ D+ V PGG+ YEIL++ ++
Sbjct: 121 SVNSPMARGLIGKEVDDVTIVKTPGGDVEYEILKIEYL 158
>gi|163850521|ref|YP_001638564.1| transcription elongation factor GreA [Methylobacterium extorquens
PA1]
gi|218529218|ref|YP_002420034.1| transcription elongation factor GreA [Methylobacterium
chloromethanicum CM4]
gi|240137586|ref|YP_002962057.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Methylobacterium extorquens AM1]
gi|254560057|ref|YP_003067152.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Methylobacterium extorquens DM4]
gi|163662126|gb|ABY29493.1| transcription elongation factor GreA [Methylobacterium extorquens
PA1]
gi|218521521|gb|ACK82106.1| transcription elongation factor GreA [Methylobacterium
chloromethanicum CM4]
gi|240007554|gb|ACS38780.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Methylobacterium extorquens AM1]
gi|254267335|emb|CAX23167.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Methylobacterium extorquens DM4]
Length = 160
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 94/155 (60%), Positives = 126/155 (81%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
DK+P+T++G+ +++EL+ RQQ ERPRII+AISEARA GDLSENAEY AAKE Q+ NEGR
Sbjct: 4 DKLPITARGYAALEEELKRRQQVERPRIIQAISEARALGDLSENAEYHAAKEAQSHNEGR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE++I RAE+ID S +SG +I FGA V L+++++ ++K YQ+VG+ EADV+ G VSI
Sbjct: 64 VLELESMIARAEIIDTSKLSGSKIKFGARVKLLDEDTEEEKTYQLVGEPEADVREGRVSI 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SSPIARALIGK +GD + V PGG K+YE++ V W
Sbjct: 124 SSPIARALIGKAVGDTVEVTTPGGGKSYEVVAVEW 158
>gi|261867705|ref|YP_003255627.1| transcription elongation factor GreA [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|293392110|ref|ZP_06636444.1| transcription elongation factor GreA [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|261413037|gb|ACX82408.1| transcription elongation factor GreA [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|290952644|gb|EFE02763.1| transcription elongation factor GreA [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 158
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQQIPMTVRGAQLLREELDYLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + ++VID++ + + ++ FGATV L+ N+ ++ +Y+IVGD EAD+++GL+
Sbjct: 61 RIQEIEGKLANSQVIDVTKIPNNGKVIFGATVVLLNTNTDEEVSYRIVGDDEADIKNGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKE+ D+++++ PGG +EI++V ++
Sbjct: 121 SVNSPIARGLVGKEVDDVVNISTPGGTVEFEIIEVDYV 158
>gi|163794418|ref|ZP_02188389.1| GreA/GreB family elongation factor [alpha proteobacterium BAL199]
gi|159180142|gb|EDP64665.1| GreA/GreB family elongation factor [alpha proteobacterium BAL199]
Length = 157
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 80/154 (51%), Positives = 115/154 (74%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T+ GF ++Q ELR + ERP +IKAI+EAR +GDLSENAEY AA++ Q+ EG
Sbjct: 1 MDKVPITAIGFQRLQDELRQLKSVERPAVIKAIAEAREHGDLSENAEYHAARDRQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE++I+R EVIDI ++GD + FG TV + ++++ ++ Y IVG EAD+ G++S
Sbjct: 61 RVAELEDVISRCEVIDIKKLTGDTVTFGVTVEVADEDTDEETKYTIVGPYEADLSKGMIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+SPIARALIGK +GD + V P G K+ EIL +
Sbjct: 121 TASPIARALIGKRVGDSVEVATPRGAKSLEILSI 154
>gi|294788006|ref|ZP_06753250.1| transcription elongation factor GreA [Simonsiella muelleri ATCC
29453]
gi|294484299|gb|EFG31982.1| transcription elongation factor GreA [Simonsiella muelleri ATCC
29453]
Length = 158
Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats.
Identities = 80/158 (50%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+TS+G +K++ EL+ + RP II AI+EAR++GDLSENAEY++AKE Q EG
Sbjct: 1 MKKIPLTSQGAEKLKNELQHLKSVARPEIIAAIAEARSHGDLSENAEYESAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A++I+ + + +I FGATV++++ +S ++ YQIVGD EAD++ +
Sbjct: 61 RIAELESKLSHAQIINPAEIHAEGKIVFGATVTVMDLDSDEESTYQIVGDDEADIKLFKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARA+IGKE GD+ V AP G + YEIL V +I
Sbjct: 121 SVSSPIARAMIGKEEGDVAEVQAPSGIREYEILSVQYI 158
>gi|260869932|ref|YP_003236334.1| transcription elongation factor GreA [Escherichia coli O111:H- str.
11128]
gi|257766288|dbj|BAI37783.1| transcription elongation factor GreA [Escherichia coli O111:H- str.
11128]
gi|323178643|gb|EFZ64219.1| transcription elongation factor GreA domain protein [Escherichia
coli 1180]
Length = 158
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ M + R+ FGATV+++ +S ++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDKEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++ + PGGE +E+++V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158
>gi|261493679|ref|ZP_05990198.1| transcription elongation factor GreA [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261494346|ref|ZP_05990840.1| transcription elongation factor GreA [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261309995|gb|EEY11204.1| transcription elongation factor GreA [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261310679|gb|EEY11863.1| transcription elongation factor GreA [Mannheimia haemolytica
serotype A2 str. BOVINE]
Length = 179
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +++++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 22 MKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 81
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A++ID++ M+ + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL+
Sbjct: 82 RIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEEVTYRIVGDDEANIKEGLI 141
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D +S+ PGG+ ++I+ V +I
Sbjct: 142 SVNSPIARGLIGKEVNDSVSITTPGGKVEFDIVGVEYI 179
>gi|328542878|ref|YP_004302987.1| transcription elongation factor GreA [polymorphum gilvum
SL003B-26A1]
gi|326412624|gb|ADZ69687.1| transcription elongation factor GreA [Polymorphum gilvum
SL003B-26A1]
Length = 152
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 90/152 (59%), Positives = 123/152 (80%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G+ +Q EL+ R ERPRI++AISEARA+GDLSENAEY AAKE Q+ NEGR+AEL
Sbjct: 1 MTAAGYAMLQAELKERTSVERPRIVEAISEARAHGDLSENAEYHAAKEAQSHNEGRIAEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ + RAE+ID+S +SGD + FGATV+L+++++ ++K Y IVGD EADV+ G +SISSPI
Sbjct: 61 EDKLGRAEIIDVSKLSGDTVKFGATVTLIDEDTEEEKQYMIVGDVEADVKQGKISISSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARALIGK +GD + V+APGG ++YEI + +I
Sbjct: 121 ARALIGKSVGDSVEVSAPGGSRSYEIEDIKFI 152
>gi|32265653|ref|NP_859685.1| transcription elongation factor GreA [Helicobacter hepaticus ATCC
51449]
gi|81666522|sp|Q7VJT9|GREA_HELHP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|32261701|gb|AAP76751.1| transcription elongation factor GreA [Helicobacter hepaticus ATCC
51449]
Length = 163
Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats.
Identities = 63/156 (40%), Positives = 106/156 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ P+T+ G++K+ EL+ ++ ERPRI+ I AR++GDL ENAEY AA+E Q E
Sbjct: 1 MATEPMTNYGYEKLCAELKNLKEVERPRIVVEIDIARSHGDLKENAEYHAAREKQAFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ EL ++ A+VID +++ ++++FG++V ++ ++ + Y +VG E++ GL+S
Sbjct: 61 RINELGLMLANAQVIDPASLPHNKVSFGSSVKILNLDTDKEFVYTLVGSMESNPSKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SSPIA+AL+GK GD +S+ P GE +EIL+V +
Sbjct: 121 VSSPIAKALMGKSEGDEVSITLPNGENEFEILEVFY 156
>gi|119897674|ref|YP_932887.1| putative transcription elongation factor [Azoarcus sp. BH72]
gi|119670087|emb|CAL94000.1| putative transcription elongation factor [Azoarcus sp. BH72]
Length = 158
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T G +K++ EL + +RP +I AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MNKTPLTIAGAEKLRLELHRLKTVDRPNVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E + A++ID + + D R FGATV L + +SG YQIVG+ EAD++ +
Sbjct: 61 RIAEVEGKLANAQIIDPTLLDADGRCVFGATVELEDMDSGQVVTYQIVGEDEADIKEFKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GDI V APGG + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKYAGDIAEVQAPGGIREYEIIDVRYI 158
>gi|114570689|ref|YP_757369.1| transcription elongation factor GreA [Maricaulis maris MCS10]
gi|122315542|sp|Q0AMQ6|GREA_MARMM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|114341151|gb|ABI66431.1| transcription elongation factor GreA [Maricaulis maris MCS10]
Length = 157
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 87/156 (55%), Positives = 120/156 (76%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G + +EL+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG
Sbjct: 1 MNKIPMTVAGQIALDEELKRLKTIERPAVIAAISEAREHGDLSENAEYHAAKERQGWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ + RA+VIDI+ MSGD + FGATV+++++++ + YQIVG+ E+DV+SG +S
Sbjct: 61 RVQELEDKLARAQVIDITKMSGDTVKFGATVTVLDEDTEQESTYQIVGEDESDVKSGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIAR++I KE+GD+ VNAPGG K+YEI+ V W
Sbjct: 121 ISSPIARSMINKEVGDVAEVNAPGGLKSYEIMSVSW 156
>gi|92118375|ref|YP_578104.1| transcription elongation factor GreA [Nitrobacter hamburgensis X14]
gi|123386993|sp|Q1QJF3|GREA_NITHX RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|91801269|gb|ABE63644.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14]
Length = 158
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 88/157 (56%), Positives = 121/157 (77%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++K+P+T G + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1 MIEKVPMTRGGHAALADELKKRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEDQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RAE+ID+S +SGD I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 61 GRIAELEDKLARAEIIDVSKLSGDTIKFGATVTLIDEDTDKKAVWQIVGEAEADAKKGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK+ G + V APGG K YEI +V W
Sbjct: 121 SITSPLARALIGKKKGASVEVVAPGGAKAYEITKVEW 157
>gi|53803860|ref|YP_114288.1| transcription elongation factor GreA [Methylococcus capsulatus str.
Bath]
gi|81681779|sp|Q607B0|GREA_METCA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|53757621|gb|AAU91912.1| transcription elongation factor GreA [Methylococcus capsulatus str.
Bath]
Length = 158
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T++G +K+++EL + RPR+I+AI+EARA+GDL ENAEYQAA+E Q EG
Sbjct: 1 MNKTPMTTRGAEKLREELNHLKTVARPRVIEAIAEARAHGDLKENAEYQAAREQQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A++ID++ + G ++ FGAT + + SG+ YQIVG+ EA+++ G +
Sbjct: 61 RIKEIEAKLANAQIIDVTRLNPGGKVVFGATAEIEDLASGEVVTYQIVGEDEAEIKEGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGK+ GD+ +V APGG + YEI+ V ++
Sbjct: 121 SVTSPIARALIGKQEGDVATVQAPGGTREYEIVSVRYV 158
>gi|115525956|ref|YP_782867.1| transcription elongation factor GreA [Rhodopseudomonas palustris
BisA53]
gi|122295116|sp|Q07JJ7|GREA_RHOP5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|115519903|gb|ABJ07887.1| transcription elongation factor GreA [Rhodopseudomonas palustris
BisA53]
Length = 160
Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats.
Identities = 88/156 (56%), Positives = 123/156 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ G+ +Q EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTANGYAALQVELKQRQTVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+A+LE+ + RA+VIDI+ +SGD I FGATV+LV++++ K +QIVG+ EAD + G +S
Sbjct: 61 RIADLEDKLARADVIDITKLSGDTIMFGATVTLVDEDTEKKAVWQIVGEPEADAKKGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+ARALIGK+ G + V APGG K YEI +V W
Sbjct: 121 ITSPLARALIGKKKGASVEVMAPGGAKAYEITKVEW 156
>gi|291279481|ref|YP_003496316.1| transcription elongation factor GreA [Deferribacter desulfuricans
SSM1]
gi|290754183|dbj|BAI80560.1| transcription elongation factor GreA [Deferribacter desulfuricans
SSM1]
Length = 157
Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats.
Identities = 81/156 (51%), Positives = 116/156 (74%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+IP+T +G++K++ EL ++ ER +IKAI EAR +GDLSENAEY AAKE Q + E
Sbjct: 1 MDRIPITKEGYEKVKAELERLKKVERREVIKAIEEARGHGDLSENAEYDAAKERQGMIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ + R EVID S + GD++ FGATV + ++G+ K Y+IVG E+D+ G +S
Sbjct: 61 RIAELESKMARFEVIDTSKLKGDKVVFGATVKIENLDTGEIKTYKIVGPDESDISKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARAL+GK++GD ++V AP GE YEIL++ +
Sbjct: 121 IISPIARALVGKKVGDDVTVIAPNGEVEYEILEISF 156
>gi|307129375|ref|YP_003881391.1| transcription elongation factor [Dickeya dadantii 3937]
gi|306526904|gb|ADM96834.1| transcription elongation factor [Dickeya dadantii 3937]
Length = 158
Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQFPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M+ + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMAANGRVIFGATVTVMNVDTEEEQTYRIVGDDEADFKLNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D+++++ PGG YEIL+V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVAISTPGGVVEYEILKVEYL 158
>gi|171318235|ref|ZP_02907398.1| transcription elongation factor GreA [Burkholderia ambifaria MEX-5]
gi|172060237|ref|YP_001807889.1| transcription elongation factor GreA [Burkholderia ambifaria
MC40-6]
gi|171096579|gb|EDT41473.1| transcription elongation factor GreA [Burkholderia ambifaria MEX-5]
gi|171992754|gb|ACB63673.1| transcription elongation factor GreA [Burkholderia ambifaria
MC40-6]
Length = 158
Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A+VID + + R+ F +TV L + SGD YQIVGD EAD+ GL+
Sbjct: 61 RIAELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158
>gi|56478163|ref|YP_159752.1| transcription elongation factor [Aromatoleum aromaticum EbN1]
gi|56314206|emb|CAI08851.1| transcription elongation factor [Aromatoleum aromaticum EbN1]
Length = 184
Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats.
Identities = 82/159 (51%), Positives = 110/159 (69%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ K P+T G +K++ EL + ERP +I AI+EAR++GDLSENAEY AAKE Q E
Sbjct: 26 IMIKTPLTVAGAEKLRNELHRLKTVERPSVIAAIAEARSHGDLSENAEYDAAKERQGFVE 85
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E I+ A++ID + D R FGATV L + ++G YQIVGD EAD++
Sbjct: 86 GRIKEIEGKISSAQIIDPKLLDADGRCVFGATVELEDMDTGQTVMYQIVGDDEADLKENK 145
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SISSPIARALIGK GDI V+APGG + YEI+ V ++
Sbjct: 146 ISISSPIARALIGKFAGDIAEVHAPGGVREYEIIDVRYV 184
>gi|22124593|ref|NP_668016.1| transcription elongation factor GreA [Yersinia pestis KIM 10]
gi|45440432|ref|NP_991971.1| transcription elongation factor GreA [Yersinia pestis biovar
Microtus str. 91001]
gi|51594823|ref|YP_069014.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
IP 32953]
gi|108806053|ref|YP_649969.1| transcription elongation factor GreA [Yersinia pestis Antiqua]
gi|108813409|ref|YP_649176.1| transcription elongation factor GreA [Yersinia pestis Nepal516]
gi|145600801|ref|YP_001164877.1| transcription elongation factor GreA [Yersinia pestis Pestoides F]
gi|153947048|ref|YP_001402559.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
IP 31758]
gi|153997282|ref|ZP_02022382.1| transcription elongation factor [Yersinia pestis CA88-4125]
gi|162421747|ref|YP_001608277.1| transcription elongation factor GreA [Yersinia pestis Angola]
gi|165928150|ref|ZP_02223982.1| transcription elongation factor GreA [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937569|ref|ZP_02226132.1| transcription elongation factor GreA [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011327|ref|ZP_02232225.1| transcription elongation factor GreA [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166214002|ref|ZP_02240037.1| transcription elongation factor GreA [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167401279|ref|ZP_02306779.1| transcription elongation factor GreA [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167420462|ref|ZP_02312215.1| transcription elongation factor GreA [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423351|ref|ZP_02315104.1| transcription elongation factor GreA [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167470193|ref|ZP_02334897.1| transcription elongation factor GreA [Yersinia pestis FV-1]
gi|170025954|ref|YP_001722459.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
YPIII]
gi|186893832|ref|YP_001870944.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
PB1/+]
gi|218930519|ref|YP_002348394.1| transcription elongation factor GreA [Yersinia pestis CO92]
gi|229839158|ref|ZP_04459317.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229896647|ref|ZP_04511814.1| transcription elongation factor [Yersinia pestis Pestoides A]
gi|229899722|ref|ZP_04514863.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. India 195]
gi|229903884|ref|ZP_04518997.1| transcription elongation factor [Yersinia pestis Nepal516]
gi|270489127|ref|ZP_06206201.1| transcription elongation factor GreA [Yersinia pestis KIM D27]
gi|25452996|sp|Q8ZBB3|GREA_YERPE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238687311|sp|A9R594|GREA_YERPG RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|21957396|gb|AAM84267.1|AE013670_4 transcription elongation factor [Yersinia pestis KIM 10]
gi|45435289|gb|AAS60848.1| transcription elongation factor [Yersinia pestis biovar Microtus
str. 91001]
gi|51588105|emb|CAH19711.1| transcription elongation factor [Yersinia pseudotuberculosis IP
32953]
gi|108777057|gb|ABG19576.1| transcription elongation factor GreA [Yersinia pestis Nepal516]
gi|108777966|gb|ABG12024.1| transcription elongation factor GreA [Yersinia pestis Antiqua]
gi|115349130|emb|CAL22093.1| transcription elongation factor [Yersinia pestis CO92]
gi|145212497|gb|ABP41904.1| transcription elongation factor GreA [Yersinia pestis Pestoides F]
gi|149288919|gb|EDM38999.1| transcription elongation factor [Yersinia pestis CA88-4125]
gi|152958543|gb|ABS46004.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
IP 31758]
gi|162354562|gb|ABX88510.1| transcription elongation factor GreA [Yersinia pestis Angola]
gi|165914674|gb|EDR33288.1| transcription elongation factor GreA [Yersinia pestis biovar
Orientalis str. IP275]
gi|165919837|gb|EDR37138.1| transcription elongation factor GreA [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989711|gb|EDR42012.1| transcription elongation factor GreA [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166204797|gb|EDR49277.1| transcription elongation factor GreA [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166961268|gb|EDR57289.1| transcription elongation factor GreA [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167049304|gb|EDR60712.1| transcription elongation factor GreA [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057521|gb|EDR67267.1| transcription elongation factor GreA [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752488|gb|ACA70006.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
YPIII]
gi|186696858|gb|ACC87487.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
PB1/+]
gi|229679654|gb|EEO75757.1| transcription elongation factor [Yersinia pestis Nepal516]
gi|229687214|gb|EEO79289.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. India 195]
gi|229695524|gb|EEO85571.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229700425|gb|EEO88457.1| transcription elongation factor [Yersinia pestis Pestoides A]
gi|262363429|gb|ACY60150.1| transcription elongation factor GreA [Yersinia pestis D106004]
gi|262367196|gb|ACY63753.1| transcription elongation factor GreA [Yersinia pestis D182038]
gi|270337631|gb|EFA48408.1| transcription elongation factor GreA [Yersinia pestis KIM D27]
gi|320013709|gb|ADV97280.1| transcription elongation factor [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 158
Score = 180 bits (458), Expect = 4e-44, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G DK+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M + R+ FGATV ++ N+ +++NY+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNLNTEEEQNYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D++ ++ PGGE YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIHTPGGEVEYEILSVEYV 158
>gi|301025974|ref|ZP_07189457.1| transcription elongation factor GreA [Escherichia coli MS 196-1]
gi|299879900|gb|EFI88111.1| transcription elongation factor GreA [Escherichia coli MS 196-1]
Length = 158
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ M + R+ F ATV+++ +S +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFCATVTVLNLDSDEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++ + PGGE +E+++V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158
>gi|162451868|ref|YP_001614235.1| transcription elongation factor GreA [Sorangium cellulosum 'So ce
56']
gi|161162450|emb|CAN93755.1| transcription elongation factor GreA [Sorangium cellulosum 'So ce
56']
Length = 158
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 72/157 (45%), Positives = 116/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K+P+T +G ++++E+R ++ + P+++K I AR +GDLSENAEY AAKE Q +
Sbjct: 1 MSEKVPMTPEGQARLREEMRRLKEIDLPQVVKDIGTAREHGDLSENAEYHAAKERQGMIV 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ LE ++RAEVID S +SG ++ FGA V L ++ +++++QIVG +EAD++ G +
Sbjct: 61 ARISYLEQTLSRAEVIDPSKLSGSKVQFGAKVKLANVDTDEEQSFQIVGPEEADLKVGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARAL+G E+G+ + VN P G +TYEIL+V +
Sbjct: 121 SIASPLARALLGHEVGEEVRVNMPAGPRTYEILEVSY 157
>gi|329297293|ref|ZP_08254629.1| GreA [Plautia stali symbiont]
Length = 158
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T KG +K+++EL + +RPRII +I+EAR GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLKGAEKLREELNELKTVKRPRIIASIAEARELGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M R+ FGATV+++ ++ ++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTAMPKTGRVIFGATVTVLNVDTDEEFTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR L+GKE D+ V P G+ YE+L+V +I
Sbjct: 121 SVNSPMARGLMGKEADDVAIVKTPSGDVEYEVLKVEYI 158
>gi|148358641|ref|YP_001249848.1| transcription elongation factor GreA [Legionella pneumophila str.
Corby]
gi|166200670|sp|A5IAV2|GREA_LEGPC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|148280414|gb|ABQ54502.1| transcription elongation factor GreA [Legionella pneumophila str.
Corby]
Length = 160
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G + +++EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEG
Sbjct: 1 MSKHPMTVEGAEALKEELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ +
Sbjct: 61 RIQELEAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SSPIARALIGKEL D ++V PGG YEI+QV +I
Sbjct: 121 SYSSPIARALIGKELDDAVTVETPGGMVEYEIIQVQYI 158
>gi|134295356|ref|YP_001119091.1| transcription elongation factor GreA [Burkholderia vietnamiensis
G4]
gi|134138513|gb|ABO54256.1| transcription elongation factor GreA [Burkholderia vietnamiensis
G4]
Length = 158
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ ++ A+VID + + R+ F +TV L + SGD YQIVGD EAD+ GL+
Sbjct: 61 RIAEIESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V APGG + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPGGVREYEIISVSYI 158
>gi|209884272|ref|YP_002288129.1| transcription elongation factor GreA [Oligotropha carboxidovorans
OM5]
gi|209872468|gb|ACI92264.1| transcription elongation factor GreA [Oligotropha carboxidovorans
OM5]
Length = 178
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 92/157 (58%), Positives = 125/157 (79%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T+ G +++EL+ RQ ERPRII+AI+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 21 MVEKLPMTAAGHLALEEELKQRQAVERPRIIEAIAEARSHGDLSENAEYHAAKEAQSHNE 80
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ I RA++ID+S +SGD I FGATV+L+++++ K YQIVG+ EAD + G +
Sbjct: 81 GRIAELEDKIARADIIDVSKLSGDTIKFGATVTLIDEDTEKKAVYQIVGESEADAKKGRI 140
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK+ G + V APGG K YEI +V W
Sbjct: 141 SITSPLARALIGKKKGTSVEVVAPGGAKAYEIAKVDW 177
>gi|145633182|ref|ZP_01788913.1| transcription elongation factor GreA [Haemophilus influenzae 3655]
gi|144986028|gb|EDJ92618.1| transcription elongation factor GreA [Haemophilus influenzae 3655]
Length = 157
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 74/157 (47%), Positives = 115/157 (73%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++SGL+
Sbjct: 61 RIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIAR LIGKEL D +++ PGG ++I++V +
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNY 157
>gi|323526828|ref|YP_004228981.1| transcription elongation factor GreA [Burkholderia sp. CCGE1001]
gi|323383830|gb|ADX55921.1| transcription elongation factor GreA [Burkholderia sp. CCGE1001]
Length = 158
Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats.
Identities = 87/158 (55%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ + A+VID S + D R+ FGATV L + SG YQIVGD EAD+ GL+
Sbjct: 61 RIAEIESKLAGAQVIDPSQVEADGRVVFGATVELEDLESGASVKYQIVGDDEADIDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ SV APGG + YEI+ V ++
Sbjct: 121 SISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158
>gi|91975935|ref|YP_568594.1| transcription elongation factor GreA [Rhodopseudomonas palustris
BisB5]
gi|91682391|gb|ABE38693.1| transcription elongation factor GreA [Rhodopseudomonas palustris
BisB5]
Length = 165
Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats.
Identities = 89/157 (56%), Positives = 122/157 (77%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 8 MVEKVPMTAGGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 67
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA++IDIS +SGD I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 68 GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGESEADAKKGKI 127
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK G + V APGG K YEI +V W
Sbjct: 128 SITSPLARALIGKTQGTSVEVVAPGGAKAYEIAKVEW 164
>gi|209517189|ref|ZP_03266034.1| transcription elongation factor GreA [Burkholderia sp. H160]
gi|209502325|gb|EEA02336.1| transcription elongation factor GreA [Burkholderia sp. H160]
Length = 158
Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats.
Identities = 86/158 (54%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G D ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ + A+VID S + D R+ FGAT+ L + SG YQIVGD EAD+ GL+
Sbjct: 61 RIAEIESKLAGAQVIDPSQVEADGRVVFGATLELEDLESGASVKYQIVGDDEADIDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ SV APGG + YEI+ V ++
Sbjct: 121 SISSPIARALIGKSEGDVASVQAPGGIREYEIIAVSYV 158
>gi|332306411|ref|YP_004434262.1| transcription elongation factor GreA [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332173740|gb|AEE22994.1| transcription elongation factor GreA [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 158
Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T+KG D +++EL+ + +RP IIK+I+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MTQYPMTAKGADMLREELQHLKSVKRPEIIKSIAEAREHGDLKENAEYHAAREQQSFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++ M + ++ FG TV+++ S D+ Y+IVGD EAD+++ L+
Sbjct: 61 RIQDIEGKLSNAQIIDVTKMPNNGKVIFGTTVTILNLESDDEITYKIVGDDEADIKNNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK+L D++++ P G +EI++V ++
Sbjct: 121 SVSSPIARGLIGKQLDDVVTIQTPKGAIEFEIIEVEYV 158
>gi|187924842|ref|YP_001896484.1| transcription elongation factor GreA [Burkholderia phytofirmans
PsJN]
gi|187716036|gb|ACD17260.1| transcription elongation factor GreA [Burkholderia phytofirmans
PsJN]
Length = 158
Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +P+T +G + ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTVPLTKRGAEMLRDELQRLKSVERPSVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ + A+VID + + D R+ FGATV L + +SG YQIVGD EAD+ GL+
Sbjct: 61 RIAEIESKLAGAQVIDPAAVEADGRVVFGATVELEDLDSGASVKYQIVGDDEADIDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ SV APGG + YEI+ V ++
Sbjct: 121 SISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158
>gi|238020364|ref|ZP_04600790.1| hypothetical protein GCWU000324_00244 [Kingella oralis ATCC 51147]
gi|237867344|gb|EEP68350.1| hypothetical protein GCWU000324_00244 [Kingella oralis ATCC 51147]
Length = 158
Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats.
Identities = 77/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T G +K++ EL+ + RP +I AI+EAR++GDLSENAEY+AAK+ Q EG
Sbjct: 1 MQKIPLTVAGAEKLKAELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKDRQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A++ID + +I FGATV++ + + ++ YQIVGD EAD++ G +
Sbjct: 61 RIAELESKLSHAQIIDPKEIHAEGKIVFGATVTVSDLETDEEATYQIVGDDEADIKIGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARA+IGKE GD+ V AP G + Y+IL V +I
Sbjct: 121 SVNSPIARAMIGKEEGDVAEVQAPSGVREYDILNVQYI 158
>gi|115351223|ref|YP_773062.1| transcription elongation factor GreA [Burkholderia ambifaria AMMD]
gi|170697948|ref|ZP_02889031.1| transcription elongation factor GreA [Burkholderia ambifaria
IOP40-10]
gi|115281211|gb|ABI86728.1| transcription elongation factor GreA [Burkholderia ambifaria AMMD]
gi|170137114|gb|EDT05359.1| transcription elongation factor GreA [Burkholderia ambifaria
IOP40-10]
Length = 158
Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGAEQLRDELQRLKSVERPAVITAIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A+VID + + R+ F +TV L + SGD YQIVGD EAD+ GL+
Sbjct: 61 RIAELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158
>gi|260220957|emb|CBA29042.1| Transcription elongation factor greA [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 163
Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ P+T +G + ++ EL + ERP +I+AI+EARA GDLSENA+Y AAKE Q EG
Sbjct: 6 MATYPITKRGAEMLKAELHKLKTVERPSVIQAIAEARAQGDLSENADYDAAKERQGFIEG 65
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID ST+ D R+ FGATV L +++SG + YQIVG+ EAD++ GL+
Sbjct: 66 RIQEVEGKLSAAQVIDPSTIQADGRVVFGATVELEDEDSGQQVKYQIVGEDEADLKQGLI 125
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ISSPIARALIGKE+GD V APGGE+ YE++ V +I
Sbjct: 126 NISSPIARALIGKEVGDTAVVQAPGGERAYEVVAVHYI 163
>gi|261342624|ref|ZP_05970482.1| transcription elongation factor GreA [Enterobacter cancerogenus
ATCC 35316]
gi|288315272|gb|EFC54210.1| transcription elongation factor GreA [Enterobacter cancerogenus
ATCC 35316]
Length = 158
Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VIDI+ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDITKMPNNGRVIFGATVTVLNLDNDEEQKYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++ + PGGE YEI++V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVVIRTPGGEVEYEIIKVEYL 158
>gi|154252759|ref|YP_001413583.1| transcription elongation factor GreA [Parvibaculum lavamentivorans
DS-1]
gi|154156709|gb|ABS63926.1| transcription elongation factor GreA [Parvibaculum lavamentivorans
DS-1]
Length = 152
Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 93/151 (61%), Positives = 125/151 (82%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+TS+G+ +++E+R+ + ERPRIIKAISEARA+GDLSENAEY AAKE Q LNE R+AEL
Sbjct: 1 MTSEGYKSLEEEIRFLKSVERPRIIKAISEARAHGDLSENAEYHAAKEQQGLNESRVAEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ I+RAEVID+S +SGD + FGATV LV++++ ++ +YQIVG+ EADV+ G VSI+SPI
Sbjct: 61 EDKISRAEVIDVSKLSGDTVMFGATVKLVDEDTEEEVSYQIVGEIEADVKQGRVSITSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK +GD + V PGG K+YEIL++ +
Sbjct: 121 ARALIGKSVGDSVEVVTPGGGKSYEILKISF 151
>gi|148258011|ref|YP_001242596.1| transcription elongation factor GreA [Bradyrhizobium sp. BTAi1]
gi|229485760|sp|A5ER96|GREA_BRASB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|146410184|gb|ABQ38690.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Bradyrhizobium sp. BTAi1]
Length = 158
Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 88/157 (56%), Positives = 126/157 (80%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+TS G+ ++ EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKVPMTSGGYAALENELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA+VID++ +SG+ I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 61 GRIAELEDKLARADVIDVTKLSGETIKFGATVTLIDEDTEKKTVWQIVGEVEADAKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK++G + V APGG K+YEI +V W
Sbjct: 121 SITSPLARALIGKKMGTTVEVMAPGGAKSYEIAKVEW 157
>gi|84500249|ref|ZP_00998515.1| transcription elongation factor GreA [Oceanicola batsensis
HTCC2597]
gi|84392183|gb|EAQ04451.1| transcription elongation factor GreA [Oceanicola batsensis
HTCC2597]
Length = 156
Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 81/156 (51%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GF ++ EL+ + ERP IIKAI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MEKIPMTRAGFTALEAELKHLKSVERPAIIKAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ A+VID T+SG + FGA V++V++++ ++K +QIVG+ EAD++ GL++
Sbjct: 61 RIKELEGVISLADVIDPKTLSG-AVKFGAKVTVVDEDTDEEKTWQIVGEYEADIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIARALIGKE GD + V PGG+++YEIL++ +
Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGDRSYEILKIEY 155
>gi|91788539|ref|YP_549491.1| GreA/GreB family elongation factor [Polaromonas sp. JS666]
gi|91697764|gb|ABE44593.1| GreA/GreB family elongation factor [Polaromonas sp. JS666]
Length = 158
Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats.
Identities = 80/158 (50%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +P+T +G +K++ EL + +RP +I +ISEARA GDLSENAEY AAK+ Q EG
Sbjct: 1 MATLPITKRGAEKLKAELHQLKTVDRPWVINSISEARAQGDLSENAEYDAAKDRQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A++ID S + G R+ FG+T+ L ++ SGD YQIVG+ EAD++ G V
Sbjct: 61 RIQEIEGKLSAAQIIDPSELDAGGRVVFGSTIELQDEESGDTVTYQIVGEDEADIKHGRV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+I SPIARALIGK+ GD V APGG K YEI+ V++I
Sbjct: 121 NIGSPIARALIGKDEGDTAEVQAPGGVKRYEIVAVMYI 158
>gi|296158199|ref|ZP_06841031.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
gi|295891535|gb|EFG71321.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
Length = 158
Score = 180 bits (456), Expect = 9e-44, Method: Composition-based stats.
Identities = 85/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +P+T +G + ++ EL+ + ERP +I +I+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTVPLTKRGAEMLRDELQRLKSVERPSVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ + A+VID + + D R+ FGATV L + NSG YQIVGD EAD+ GL+
Sbjct: 61 RIAEIESKLAGAQVIDPAAVEADGRVVFGATVELEDLNSGASVKYQIVGDDEADIDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ SV APGG + YEI+ V ++
Sbjct: 121 SISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158
>gi|253999583|ref|YP_003051646.1| transcription elongation factor GreA [Methylovorus sp. SIP3-4]
gi|313201618|ref|YP_004040276.1| transcription elongation factor grea [Methylovorus sp. MP688]
gi|253986262|gb|ACT51119.1| transcription elongation factor GreA [Methylovorus sp. SIP3-4]
gi|312440934|gb|ADQ85040.1| transcription elongation factor GreA [Methylovorus sp. MP688]
Length = 158
Score = 180 bits (456), Expect = 9e-44, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T G + ++QEL+ + +RP +I+AI+EARA GDLSENAEY AAKE Q+ EG
Sbjct: 1 MNQIPITVNGAELLKQELQRLRSVDRPNVIQAIAEARAQGDLSENAEYDAAKERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E ++ A VID T++ R FGATV + + ++GD YQIVGD EAD++ G +
Sbjct: 61 RIAEIEAKLSNAMVIDPKTLNAEGRCVFGATVEVEDLDNGDVSTYQIVGDDEADIKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SPIAR LIGK GD+ V APGG ++YE+L V +I
Sbjct: 121 SIGSPIARGLIGKTAGDVAEVMAPGGLRSYEVLDVQYI 158
>gi|78065906|ref|YP_368675.1| transcription elongation factor GreA [Burkholderia sp. 383]
gi|77966651|gb|ABB08031.1| transcription elongation factor GreA [Burkholderia sp. 383]
Length = 158
Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G + ++ EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGAELLRDELQRLKSVERPAVINAISEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A+VID + + R+ F +TV L + SGD YQIVGD EAD+ GL+
Sbjct: 61 RIAELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158
>gi|121608129|ref|YP_995936.1| transcription elongation factor GreA [Verminephrobacter eiseniae
EF01-2]
gi|189042254|sp|A1WH11|GREA_VEREI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|121552769|gb|ABM56918.1| transcription elongation factor GreA [Verminephrobacter eiseniae
EF01-2]
Length = 158
Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats.
Identities = 81/157 (51%), Positives = 111/157 (70%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K++QEL + ERP +I AI+EARA GDLSENA+Y AAK+ Q EG
Sbjct: 1 MTTIPITKRGAEKLKQELHHLKTVERPSVITAIAEARAQGDLSENADYDAAKDRQGFVEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID + G ++ FGATV L ++ SGD YQIVG+ EAD++ GL+
Sbjct: 61 RIQEIEGKLSVAQVIDPGEVDGGGKVVFGATVQLEDEESGDTVTYQIVGEDEADLKQGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ISSPIARALIGKE GD V AP G + YE++ V +
Sbjct: 121 NISSPIARALIGKEEGDTAEVQAPSGIRRYEVVAVSY 157
>gi|161525197|ref|YP_001580209.1| transcription elongation factor GreA [Burkholderia multivorans ATCC
17616]
gi|189350064|ref|YP_001945692.1| transcription elongation factor GreA [Burkholderia multivorans ATCC
17616]
gi|221201965|ref|ZP_03575001.1| transcription elongation factor GreA [Burkholderia multivorans
CGD2M]
gi|221204905|ref|ZP_03577922.1| transcription elongation factor GreA [Burkholderia multivorans
CGD2]
gi|221213882|ref|ZP_03586855.1| transcription elongation factor GreA [Burkholderia multivorans
CGD1]
gi|160342626|gb|ABX15712.1| transcription elongation factor GreA [Burkholderia multivorans ATCC
17616]
gi|189334086|dbj|BAG43156.1| transcription elongation factor [Burkholderia multivorans ATCC
17616]
gi|221166059|gb|EED98532.1| transcription elongation factor GreA [Burkholderia multivorans
CGD1]
gi|221175762|gb|EEE08192.1| transcription elongation factor GreA [Burkholderia multivorans
CGD2]
gi|221178048|gb|EEE10459.1| transcription elongation factor GreA [Burkholderia multivorans
CGD2M]
Length = 158
Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A++ID + + D R+ F ATV L + SGD YQIVGD EAD+ GL+
Sbjct: 61 RIAELESKLSAAQIIDPTVLEADGRVVFAATVELEDLESGDTVKYQIVGDDEADIDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158
>gi|121594730|ref|YP_986626.1| transcription elongation factor GreA [Acidovorax sp. JS42]
gi|222110667|ref|YP_002552931.1| transcription elongation factor grea [Acidovorax ebreus TPSY]
gi|120606810|gb|ABM42550.1| transcription elongation factor GreA [Acidovorax sp. JS42]
gi|221730111|gb|ACM32931.1| transcription elongation factor GreA [Acidovorax ebreus TPSY]
Length = 158
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EG
Sbjct: 1 MATIPITKRGAEKLKEELHRLKTVERPAVISAIAEARAQGDLSENAEYEAAKDRQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A++ID S + G R+ FGATV L ++++GD YQIVG+ EAD++ GL+
Sbjct: 61 RIMEIEGKLSAAQIIDPSALDAGGRVVFGATVELEDEDTGDAVKYQIVGEDEADLKHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++SSPIARALIGKE GD V APGG + YE++ V +I
Sbjct: 121 NVSSPIARALIGKEEGDTAEVQAPGGVRRYEVVAVSYI 158
>gi|27382489|ref|NP_774018.1| transcription elongation factor GreA [Bradyrhizobium japonicum USDA
110]
gi|81734738|sp|Q89DR1|GREA_BRAJA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|27355661|dbj|BAC52643.1| transcription elongation factor [Bradyrhizobium japonicum USDA 110]
Length = 157
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 92/156 (58%), Positives = 125/156 (80%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+TS GF + +EL+ RQ E+RPRII+ I+EAR++GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTSAGFAALGEELKKRQSEDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ + RA++IDIS +SGD I FGATV+LV++++ K +QIVG+ EAD + G +S
Sbjct: 61 RIAELEDKLARADIIDISKLSGDTIKFGATVTLVDEDTEKKAVWQIVGEVEADAKKGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+ARALIGK+ G + VNAPGG K YEI +V W
Sbjct: 121 ITSPLARALIGKKKGSTVEVNAPGGAKAYEITKVEW 156
>gi|300918939|ref|ZP_07135497.1| transcription elongation factor GreA [Escherichia coli MS 115-1]
gi|300413935|gb|EFJ97245.1| transcription elongation factor GreA [Escherichia coli MS 115-1]
Length = 158
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ M + R+ FGATV+ + +S +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTGLNLDSDEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++ + PGGE +E+++V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158
>gi|83951519|ref|ZP_00960251.1| transcription elongation factor GreA [Roseovarius nubinhibens ISM]
gi|83836525|gb|EAP75822.1| transcription elongation factor GreA [Roseovarius nubinhibens ISM]
Length = 164
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 81/157 (51%), Positives = 123/157 (78%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T +G + ++ EL+ + EERP II+AI+EAR +GDLSENAEY +A+E Q+ EG
Sbjct: 9 MEKIPMTRRGHEALEVELKHLKSEERPAIIRAIAEAREHGDLSENAEYHSAREKQSFIEG 68
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +++ AEV D + +SG I FGATV+LV++++ ++K +QIVG+ EA ++ GL++
Sbjct: 69 RIKELEGVLSLAEVFDPAKLSGP-IKFGATVTLVDEDTDEEKTWQIVGEHEASIEKGLLN 127
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SPIARALIGK+ GD + V PGGE++YE+L++ +I
Sbjct: 128 IKSPIARALIGKDEGDSVEVRTPGGERSYEVLKIEYI 164
>gi|307944270|ref|ZP_07659611.1| transcription elongation factor GreA [Roseibium sp. TrichSKD4]
gi|307772616|gb|EFO31836.1| transcription elongation factor GreA [Roseibium sp. TrichSKD4]
Length = 157
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 95/157 (60%), Positives = 126/157 (80%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ G+ +Q+EL+ R ERPRI++AI+EARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTDGYAMLQEELKQRTSVERPRIVEAIAEARAHGDLSENAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ ++RAEVID+S MSGD I FGATVSLV++++ ++K Y IVGD EADV+ +S
Sbjct: 61 RVAELEDKLSRAEVIDVSKMSGDVIKFGATVSLVDEDTEEEKKYMIVGDVEADVKQHKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK GD + V APGG + YEI V ++
Sbjct: 121 ISSPIARALIGKTEGDSVEVAAPGGARAYEITAVEYV 157
>gi|268592834|ref|ZP_06127055.1| transcription elongation factor GreA [Providencia rettgeri DSM
1131]
gi|291311620|gb|EFE52073.1| transcription elongation factor GreA [Providencia rettgeri DSM
1131]
Length = 158
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T G DK+++EL + + RP II +I+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVLGADKLREELEFLKSVRRPEIIASIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M + R+ FGATV+++ ++ ++ Y+IVGD EAD++ L+
Sbjct: 61 RIQEIEGKLSHAQVIDVTKMVNNGRVIFGATVTVLNVDTDEELTYRIVGDDEADIKINLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKE+ D +S+ PGG+ +EIL+V +I
Sbjct: 121 SVNSPIARGLVGKEVDDAVSIKTPGGDVEFEILKVEYI 158
>gi|238750117|ref|ZP_04611620.1| Transcription elongation factor greA [Yersinia rohdei ATCC 43380]
gi|238711661|gb|EEQ03876.1| Transcription elongation factor greA [Yersinia rohdei ATCC 43380]
Length = 158
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T G DK+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVGGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDIS M + R+ FGATV ++ +S +++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDISKMPNNGRVIFGATVRVLNVDSEEEQQYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D++ + PGGE YEIL+V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILKVDYV 158
>gi|293607001|ref|ZP_06689345.1| transcription elongation factor GreA [Achromobacter piechaudii ATCC
43553]
gi|292814598|gb|EFF73735.1| transcription elongation factor GreA [Achromobacter piechaudii ATCC
43553]
Length = 158
Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +++Q+EL+ + ERP +I AI+EARA GDLSENAEY AA+E Q EG
Sbjct: 1 MSAIPLTVRGAERLQEELQRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE ++ A +ID +++ R FGATV + + +SGD+ YQIVGD EAD+++ L+
Sbjct: 61 RIAELEGTLSNAHLIDPTSLDAEGRAVFGATVDIEDLDSGDRVTYQIVGDVEADIKANLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSP+ARALIGK GD++ V AP G + YE+L V +I
Sbjct: 121 SVSSPVARALIGKSEGDVVEVKAPAGVREYEVLGVRYI 158
>gi|315497713|ref|YP_004086517.1| transcription elongation factor grea [Asticcacaulis excentricus CB
48]
gi|315415725|gb|ADU12366.1| transcription elongation factor GreA [Asticcacaulis excentricus CB
48]
Length = 152
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 81/152 (53%), Positives = 121/152 (79%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG++AE+
Sbjct: 1 MTVAGYQSLDDELKRLKSVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEGQIAEI 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ I+RA+VID+S +SG++I FGATV++V++++ ++ YQ+VG+ EADV++G +S+SSP+
Sbjct: 61 EDKISRAQVIDVSKLSGNQIKFGATVTVVDEDTEEEGRYQVVGEHEADVKAGRISLSSPL 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+RA+IGKE+GD++ VN P G K YEIL+V WI
Sbjct: 121 SRAMIGKEVGDVVEVNTPAGVKAYEILKVEWI 152
>gi|299132015|ref|ZP_07025210.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2]
gi|298592152|gb|EFI52352.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2]
Length = 158
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 90/157 (57%), Positives = 124/157 (78%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T+ G ++ EL+ RQ ERPRII+AI+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1 MVEKLPITAAGLVALEDELKQRQSVERPRIIEAIAEARSHGDLSENAEYHAAKEAQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA++ID+S +SGD I FGATV+L+++++ K YQIVG+ EAD + G +
Sbjct: 61 GRIAELEDKLARADIIDVSKLSGDTIKFGATVTLIDEDTEKKVVYQIVGETEADAKKGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK+ G + V APGG K YE+ +V W
Sbjct: 121 SITSPLARALIGKKKGTSVEVVAPGGAKAYEVAKVDW 157
>gi|270265050|ref|ZP_06193313.1| transcription elongation factor GreA [Serratia odorifera 4Rx13]
gi|270040984|gb|EFA14085.1| transcription elongation factor GreA [Serratia odorifera 4Rx13]
Length = 158
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTLFGAEKLREELEYLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M + R+ FG+TVS++ +S ++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGSTVSVMNLDSEEEVTYRIVGDDEADFKKNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR LIGKE D++ + PGG+ YEIL+V ++
Sbjct: 121 SVNSPMARGLIGKEQDDVVVIKTPGGDVDYEILKVEYL 158
>gi|237808999|ref|YP_002893439.1| transcription elongation factor GreA [Tolumonas auensis DSM 9187]
gi|237501260|gb|ACQ93853.1| transcription elongation factor GreA [Tolumonas auensis DSM 9187]
Length = 158
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 122/158 (77%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++ P+T G +K+++EL + + +RP+II+AI+EARA+GDL ENAEY AA+E Q EG
Sbjct: 1 MNQTPMTVLGAEKLREELEYLKTVQRPQIIQAIAEARAHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E +++A++ID++ + + R+ FGATV++++ ++ ++ Y+IVGD E+D++SGL+
Sbjct: 61 RIQEVEAKLSKAQIIDVTKLPKNGRVIFGATVTVLKCDTEEEITYRIVGDDESDIKSGLL 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI+SPIAR LIGKE+ D+ ++ P G+ +EI+QV +I
Sbjct: 121 SINSPIARGLIGKEVDDVATITTPAGKVDFEIVQVEYI 158
>gi|209545146|ref|YP_002277375.1| transcription elongation factor GreA [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532823|gb|ACI52760.1| transcription elongation factor GreA [Gluconacetobacter
diazotrophicus PAl 5]
Length = 152
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 84/151 (55%), Positives = 122/151 (80%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG ++++ELR + EERP +I+AI+EAR++GDLSENAEY AA++ Q+ EGR+ EL
Sbjct: 1 MTGKGLQRLEEELRKLKSEERPAVIRAIAEARSHGDLSENAEYHAARDRQSFIEGRILEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+II+ AEVID +++SGD++ FGA VSLV++ + + YQIVG EAD++ GL+S+SSP+
Sbjct: 61 EDIISSAEVIDPASLSGDQVKFGAQVSLVDEETDKEATYQIVGVHEADIKQGLLSVSSPL 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A++LIGK +GD +SV APGG++TYEIL V +
Sbjct: 121 AKSLIGKRIGDSVSVPAPGGDRTYEILAVTY 151
>gi|304396338|ref|ZP_07378219.1| GreA/GreB family elongation factor [Pantoea sp. aB]
gi|304355847|gb|EFM20213.1| GreA/GreB family elongation factor [Pantoea sp. aB]
Length = 158
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +++++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGAERLREELNELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M R+ FGATV+++ + ++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR L+GKE D+ V PGG+ YEIL+V ++
Sbjct: 121 SVNSPMARGLVGKEADDVAIVKTPGGDVEYEILKVEYL 158
>gi|91775133|ref|YP_544889.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
gi|91709120|gb|ABE49048.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
Length = 158
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T KG + ++ EL+ + +RP +I+AI+EARA GDLSENAEY AAKE Q+ EG
Sbjct: 1 MNQIPITVKGAELLKAELQRLRSVDRPAVIQAIAEARAQGDLSENAEYDAAKERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E ++ A +ID +T++ R FGATV + + +SG+ YQIVGD EAD++SG +
Sbjct: 61 RIAEIEAKLSNAMIIDPATLNAEGRCVFGATVEVEDLDSGEVSTYQIVGDDEADIKSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SPIARALIGK GD+ V APGG ++YEIL V +I
Sbjct: 121 SIGSPIARALIGKVEGDVAEVVAPGGLRSYEILSVKYI 158
>gi|304321206|ref|YP_003854849.1| transcription elongation factor GreA [Parvularcula bermudensis
HTCC2503]
gi|303300108|gb|ADM09707.1| transcription elongation factor GreA [Parvularcula bermudensis
HTCC2503]
Length = 157
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 121/156 (77%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T GF K++ +++ + ERP +I+AISEAR +GDLSENAEY AAKE Q+ EG
Sbjct: 1 MEKFPMTKAGFAKLEADIKHLKTVERPAVIQAISEAREHGDLSENAEYHAAKERQSWIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ +LE+ +RA+VID++++SG + FGA+V+LV++ + ++K YQIVGD EAD+++G +S
Sbjct: 61 QVLDLEDKHSRAQVIDVASLSGPDVKFGASVTLVDEETEEEKVYQIVGDLEADIKAGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIARALIGKE GD + V APGG YEI +V +
Sbjct: 121 ISSPIARALIGKEEGDQVEVAAPGGSHIYEIEKVEY 156
>gi|317405977|gb|EFV86255.1| GreA protein [Achromobacter xylosoxidans C54]
Length = 158
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +++Q+EL+ + ERP +I AI+EARA GDLSENAEY AA+E Q EG
Sbjct: 1 MSAIPLTVRGAERLQEELQRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE ++ A +ID +++ R FGATV + + +SGD+ YQIVGD EAD++S L+
Sbjct: 61 RIAELEGTLSNAHLIDPTSLEAEGRAVFGATVDIEDLDSGDRVTYQIVGDVEADIKSNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSP+ARALIGK GD++ V AP G + YE+L V +I
Sbjct: 121 SVSSPVARALIGKSEGDVVEVKAPAGVREYEVLSVRYI 158
>gi|240949666|ref|ZP_04754001.1| transcription elongation factor GreA [Actinobacillus minor NM305]
gi|240295924|gb|EER46600.1| transcription elongation factor GreA [Actinobacillus minor NM305]
Length = 158
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGAELLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A++ID++ M + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+
Sbjct: 61 RIQEIEGKLANAQIIDVTKMQNNGKVIFGATVSLVNVDTDEEVTYRIVGDDEANIKEGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I
Sbjct: 121 SVNSPIARGLVGKEVDDSVSITTPGGKVEFDIVDVEYI 158
>gi|317177306|dbj|BAJ55095.1| transcription elongation factor GreA [Helicobacter pylori F16]
Length = 164
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II A+VID S ++ ++++FG+T+ ++ + + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIIANAQVIDPSALAHNKVSFGSTIKILNLGNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SSPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FSSPIAKSLIGKSKGDSVSIQLPNGESDFEILDIYY 156
>gi|146328850|ref|YP_001210068.1| transcription elongation factor GreA [Dichelobacter nodosus
VCS1703A]
gi|146232320|gb|ABQ13298.1| transcription elongation factor GreA [Dichelobacter nodosus
VCS1703A]
Length = 160
Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats.
Identities = 78/159 (49%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KIP+T G + +Q EL + ++RP +I+AI+EAR +GDL ENAEY AA+E Q E
Sbjct: 1 MNQKIPMTKAGAEALQAELEKLKSKDRPAVIQAIAEAREHGDLKENAEYHAAREQQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E ++ +ID++ + D R+ FG T+ L + NSG+ Y+IVG+ EAD++ G+
Sbjct: 61 GRIQEIEFKLSNVNIIDVTRLPQDGRVVFGTTIELEDANSGEIMKYKIVGEDEADIKKGM 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S SSPIARAL GKE GDI+ VN PGG+K+ EI+ V +I
Sbjct: 121 ISNSSPIARALFGKEEGDIVDVNVPGGQKSLEIIAVHYI 159
>gi|253997071|ref|YP_003049135.1| transcription elongation factor GreA [Methylotenera mobilis JLW8]
gi|253983750|gb|ACT48608.1| transcription elongation factor GreA [Methylotenera mobilis JLW8]
Length = 160
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ PVT +G + +++EL+ + +RP II+AI+EARA GDLSENAEY++AKE Q+ EGR+
Sbjct: 5 QFPVTVRGAELLKEELQRLRGVDRPNIIQAIAEARAQGDLSENAEYESAKERQSFIEGRI 64
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
AELE ++ ++ID T++ R+ FGATV++ + +SGD K YQIVG+ EAD+++G +S+
Sbjct: 65 AELEAKLSNLQIIDPQTLNAEGRVVFGATVNIEDLDSGDNKTYQIVGEDEADIKNGKISV 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSPIAR LIGK GDI V+APGG + YE+L VL+I
Sbjct: 125 SSPIARGLIGKSAGDIAEVSAPGGVREYEVLDVLYI 160
>gi|90425319|ref|YP_533689.1| transcription elongation factor GreA [Rhodopseudomonas palustris
BisB18]
gi|123394824|sp|Q20ZR6|GREA_RHOPB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|90107333|gb|ABD89370.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
BisB18]
Length = 158
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 88/157 (56%), Positives = 124/157 (78%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++K+P+T+ G+ ++ EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1 MIEKVPMTAGGYAALEVELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA++IDIS +SGD I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 61 GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEPEADAKKGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK+ G + V APGG K YEI +V W
Sbjct: 121 SITSPLARALIGKKKGASVEVVAPGGAKAYEITKVEW 157
>gi|217034498|ref|ZP_03439909.1| hypothetical protein HP9810_873g14 [Helicobacter pylori 98-10]
gi|216943039|gb|EEC22518.1| hypothetical protein HP9810_873g14 [Helicobacter pylori 98-10]
gi|315586469|gb|ADU40850.1| transcription elongation factor GreA [Helicobacter pylori 35A]
gi|317178776|dbj|BAJ56564.1| transcription elongation factor GreA [Helicobacter pylori F30]
Length = 164
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIIANAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDSVSIQLPNGESDFEILDIYY 156
>gi|238757567|ref|ZP_04618752.1| Transcription elongation factor greA [Yersinia aldovae ATCC 35236]
gi|238704329|gb|EEP96861.1| Transcription elongation factor greA [Yersinia aldovae ATCC 35236]
Length = 158
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVNGAEKLREELDFLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M + R+ FG TV ++ +S ++++Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGCTVRVLNVDSEEEQHYRIVGDDEADFKKNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D++ + PGGE YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILNVDYV 158
>gi|254361960|ref|ZP_04978091.1| transcription elongation factor GreA [Mannheimia haemolytica
PHL213]
gi|153093507|gb|EDN74487.1| transcription elongation factor GreA [Mannheimia haemolytica
PHL213]
Length = 158
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +++++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A++ID++ M+ + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL+
Sbjct: 61 RIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEEVTYRIVGDDEANIKEGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D +S+ PGG+ ++I+ V +I
Sbjct: 121 SVNSPIARGLIGKEVDDSVSITTPGGKVEFDIVGVEYI 158
>gi|85058346|ref|YP_454048.1| transcription elongation factor [Sodalis glossinidius str.
'morsitans']
gi|84778866|dbj|BAE73643.1| transcription elongation factor [Sodalis glossinidius str.
'morsitans']
Length = 158
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T G +K+++EL + + RP II +I+EAR GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLCGAEKLREELEYLKSIRRPEIILSIAEAREQGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ + R+ FGATVS+ +S +K+ ++IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKLAPSGRVIFGATVSVENLDSEEKQTFRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI+SPIAR L+GKE GDI+ + PGGE YEIL+V ++
Sbjct: 121 SINSPIARGLVGKEEGDIVVIKTPGGEVEYEILKVEYL 158
>gi|320540168|ref|ZP_08039823.1| putative transcription elongation factor [Serratia symbiotica str.
Tucson]
gi|320029834|gb|EFW11858.1| putative transcription elongation factor [Serratia symbiotica str.
Tucson]
Length = 158
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T G +K+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTLFGAEKLREELEYLKSVRRPKIIADIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ + R+ FGATVS++ +S ++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKIPNTGRVIFGATVSVLNLDSEEEVTYRIVGDDEADFKKNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR LIGKE D++ + PGG+ YEIL+V ++
Sbjct: 121 SVNSPMARGLIGKEQDDVVVIKTPGGDVDYEILKVEYL 158
>gi|226329694|ref|ZP_03805212.1| hypothetical protein PROPEN_03606 [Proteus penneri ATCC 35198]
gi|225202880|gb|EEG85234.1| hypothetical protein PROPEN_03606 [Proteus penneri ATCC 35198]
Length = 158
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTVLGAEKLREELEYLKNVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M+ + RI FG+TV+L+ + +++ Y+IVGD EA+++ L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMNNNGRIIFGSTVTLLNVENEEEQTYRIVGDDEANIKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKEL D++ + PGG+ YE+L V +I
Sbjct: 121 SVNSPIARGLIGKELDDVVVITTPGGQVEYEVLNVEYI 158
>gi|15602580|ref|NP_245652.1| transcription elongation factor GreA [Pasteurella multocida subsp.
multocida str. Pm70]
gi|13431536|sp|P57801|GREA_PASMU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|12721009|gb|AAK02799.1| GreA [Pasteurella multocida subsp. multocida str. Pm70]
Length = 158
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 69/157 (43%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G ++++QEL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTIRGAEQLKQELDFLKNTRRPEIINAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + +++ID++ + + ++ FGAT+ L+ ++ ++ +YQIVGD EA++++GL+
Sbjct: 61 RIQEIEGKLANSQIIDVTKIPNNGKVIFGATILLLNIDTEEEVSYQIVGDDEANIKAGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIAR LIGKE+ D++ + PGG+ +EIL+V +
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIQTPGGKVEFEILEVEY 157
>gi|300721528|ref|YP_003710803.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Xenorhabdus nematophila ATCC 19061]
gi|297628020|emb|CBJ88569.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Xenorhabdus nematophila ATCC 19061]
Length = 158
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G DK+++EL + RP+II AI++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGADKLREELEHLRNVRRPQIITAIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M+ + R+ FGATV+++ +S +++ Y+IVGD EA+++ L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMTNNGRVIFGATVTVLNVDSDEEQTYRIVGDDEANIKENLL 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D + + PGG+ YE+L V ++
Sbjct: 121 SVNSPIARGLIGKEVDDAVVIATPGGQVEYEVLNVDYL 158
>gi|332530815|ref|ZP_08406741.1| transcription elongation factor GreA [Hylemonella gracilis ATCC
19624]
gi|332039727|gb|EGI76127.1| transcription elongation factor GreA [Hylemonella gracilis ATCC
19624]
Length = 158
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 81/157 (51%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K++ EL + +RP +I AI+EARA GDLSENAEY AAK+ Q EG
Sbjct: 1 MATIPITLRGAEKLKTELHRLKTVDRPAVINAIAEARAQGDLSENAEYDAAKDRQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID + + G ++ FGATV L ++ +GD YQIVG+ EAD++ GL+
Sbjct: 61 RIQEIEGKLSAAQVIDPAGLDAGGKVVFGATVELEDEATGDSVTYQIVGEDEADLKQGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++SSPIARALIGKE GD V APGG K YEI+ V +
Sbjct: 121 NVSSPIARALIGKEEGDTAEVQAPGGVKRYEIVAVSY 157
>gi|262197389|ref|YP_003268598.1| transcription elongation factor GreA [Haliangium ochraceum DSM
14365]
gi|262080736|gb|ACY16705.1| transcription elongation factor GreA [Haliangium ochraceum DSM
14365]
Length = 169
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 108/158 (68%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DK P+T G ++ +L+ ++ +RP KAI AR +GDLSENA+Y AAKE Q + E
Sbjct: 1 MADKFPMTPSGHAWMKAQLKKLKEVDRPANAKAIEVARGHGDLSENADYDAAKEEQGMIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E E + +EVID + +SG+R+ FGATV++ + ++GD+ Y IVG+ EAD+++ +
Sbjct: 61 ARIREYEAKLALSEVIDPTKLSGERVKFGATVTVEDIDTGDEATYTIVGEHEADIKNKRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+++P+ARALIGK +GD V P G + +EI+ V W+
Sbjct: 121 SVTAPVARALIGKAIGDETQVQTPKGTRAFEIVDVKWL 158
>gi|86748640|ref|YP_485136.1| transcription elongation factor GreA [Rhodopseudomonas palustris
HaA2]
gi|86571668|gb|ABD06225.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
HaA2]
Length = 174
Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats.
Identities = 89/157 (56%), Positives = 122/157 (77%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+K+P+T+ G+ + EL+ RQ +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 17 MVEKVPMTAGGYAALSDELKKRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 76
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE+ + RA++IDIS +SGD I FGATV+L+++++ K +QIVG+ EAD + G +
Sbjct: 77 GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGENEADAKKGKI 136
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+ARALIGK G + V APGG K YEI +V W
Sbjct: 137 SITSPLARALIGKTKGTSVEVVAPGGAKAYEIAKVEW 173
>gi|308189104|ref|YP_003933235.1| Transcription elongation factor greA [Pantoea vagans C9-1]
gi|308059614|gb|ADO11786.1| Transcription elongation factor greA [Pantoea vagans C9-1]
Length = 158
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G +++++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGAERLREELNELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M R+ FGATV+++ + ++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVTVLNVETDEEATYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR L+GKE D+ V PGG+ YEIL+V ++
Sbjct: 121 SVNSPMARGLVGKEADDVAIVKTPGGDVEYEILKVEYL 158
>gi|257465495|ref|ZP_05629866.1| transcription elongation factor GreA [Actinobacillus minor 202]
gi|257451155|gb|EEV25198.1| transcription elongation factor GreA [Actinobacillus minor 202]
Length = 158
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGAELLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A++ID++ M + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+
Sbjct: 61 RIQEIEGKLANAQIIDVTKMQNNGKVIFGATVSLVNVDTDEEVTYRIVGDDEANIKEGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKE+ D +S+ PGG+ ++I+ V ++
Sbjct: 121 SVNSPIARGLVGKEVDDSVSITTPGGKVEFDIVDVEYL 158
>gi|33593266|ref|NP_880910.1| transcription elongation factor [Bordetella pertussis Tohama I]
gi|33596678|ref|NP_884321.1| transcription elongation factor [Bordetella parapertussis 12822]
gi|33600442|ref|NP_888002.1| transcription elongation factor [Bordetella bronchiseptica RB50]
gi|29603208|emb|CAC79553.1| transcription elongation factor [Bordetella pertussis Tohama I]
gi|33563641|emb|CAE42542.1| transcription elongation factor [Bordetella pertussis Tohama I]
gi|33568041|emb|CAE31954.1| transcription elongation factor [Bordetella bronchiseptica RB50]
gi|33573379|emb|CAE37363.1| transcription elongation factor [Bordetella parapertussis]
gi|332382675|gb|AEE67522.1| transcription elongation factor [Bordetella pertussis CS]
Length = 158
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +++QQEL + ERP +I AI+EARA GDLSENAEY AA+E Q EG
Sbjct: 1 MSAIPLTVRGAERLQQELHRLKTVERPAVISAIAEARAQGDLSENAEYDAARERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE ++ A +ID + + R FGATV + + +SGD+ YQIVGD EAD++S L+
Sbjct: 61 RISELEGTLSNAHLIDPTALDAEGRAVFGATVEIEDLDSGDRLTYQIVGDVEADIKSNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSP+ARALIGK GD++ V P G + YE++ V ++
Sbjct: 121 SVSSPVARALIGKSEGDVVEVKVPAGVREYEVIGVRYL 158
>gi|153004935|ref|YP_001379260.1| transcription elongation factor GreA [Anaeromyxobacter sp. Fw109-5]
gi|152028508|gb|ABS26276.1| transcription elongation factor GreA [Anaeromyxobacter sp. Fw109-5]
Length = 168
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 120/158 (75%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++P+T G ++++EL+ + ERP+I+K I+EAR++GDLSENAEY AAKE Q+ E
Sbjct: 1 MSERVPMTKGGLLRLKEELKRLKNVERPKIVKEIAEARSHGDLSENAEYHAAKEKQSHIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ++E+ I AEVID+S +GDR+ FGATVSL E SGD Y+IVG+ EAD++ G +
Sbjct: 61 GRILQVEHWIASAEVIDVSKHAGDRVVFGATVSLEESESGDHVTYRIVGELEADLKQGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIG+E GD ++V PGG+K YEI + ++
Sbjct: 121 SVTSPIARALIGREEGDAVTVRTPGGQKEYEIQSISFV 158
>gi|302382095|ref|YP_003817918.1| transcription elongation factor GreA [Brevundimonas subvibrioides
ATCC 15264]
gi|302192723|gb|ADL00295.1| transcription elongation factor GreA [Brevundimonas subvibrioides
ATCC 15264]
Length = 152
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 83/151 (54%), Positives = 117/151 (77%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G+ + +L+ + ERP +I AISEAR +GDLSENAEY AAKE Q EG +AE+
Sbjct: 1 MTAEGYRSLDDQLKQLKSVERPSVIAAISEAREHGDLSENAEYHAAKERQGWIEGSIAEI 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ I+RA+VID+S +SGD++ FGATV++V++++ ++ YQIVG+ EADV+ G +SISSPI
Sbjct: 61 EDKISRAQVIDVSKLSGDQVKFGATVTVVDEDTEEEGRYQIVGEHEADVKKGKISISSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARA+I K +GD + VN PGG K YEIL+V W
Sbjct: 121 ARAMISKAVGDTVEVNTPGGVKAYEILKVEW 151
>gi|238787585|ref|ZP_04631383.1| Transcription elongation factor greA [Yersinia frederiksenii ATCC
33641]
gi|238724372|gb|EEQ16014.1| Transcription elongation factor greA [Yersinia frederiksenii ATCC
33641]
Length = 158
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G DK+++EL + + RP+II I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M + R+ FGATV ++ +S +++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVDSEEEQQYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D++ + PGGE YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILHVDYV 158
>gi|294676071|ref|YP_003576686.1| transcription elongation factor GreA [Rhodobacter capsulatus SB
1003]
gi|294474891|gb|ADE84279.1| transcription elongation factor GreA [Rhodobacter capsulatus SB
1003]
Length = 156
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 85/157 (54%), Positives = 123/157 (78%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G+D + +EL+ + ERP +IKAI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKIPMTRAGYDVLDEELKTLKSVERPAVIKAIAEAREHGDLSENAEYHAAREKQSFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+I+ RAEVID +SG I FGATV+LV++++ +++ YQIVG+ EAD++ GL++
Sbjct: 61 RIKELESILGRAEVIDTVKLSGS-IKFGATVTLVDEDTEEERTYQIVGEHEADLERGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARALIGK+ GD + V PGG+++YEIL V ++
Sbjct: 120 IKSPLARALIGKDEGDSVEVRTPGGQRSYEILSVRFL 156
>gi|149202969|ref|ZP_01879940.1| transcription elongation factor GreA [Roseovarius sp. TM1035]
gi|149143515|gb|EDM31551.1| transcription elongation factor GreA [Roseovarius sp. TM1035]
Length = 156
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 85/157 (54%), Positives = 122/157 (77%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T+ G ++ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPMTAGGHAALEVELKQLKSVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ AEVID + +SG I FGATV+LV+++SG+++ YQIVG+ EA ++ GL++
Sbjct: 61 RIKELEGILSLAEVIDPAKLSGP-IKFGATVTLVDEDSGEERTYQIVGEHEASIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SPIARALIGKE GD + V PGG++ YE+++V +I
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGDRGYEVIKVAYI 156
>gi|308184650|ref|YP_003928783.1| transcription elongation factor GreA [Helicobacter pylori SJM180]
gi|308060570|gb|ADO02466.1| transcription elongation factor GreA [Helicobacter pylori SJM180]
gi|317014274|gb|ADU81710.1| transcription elongation factor GreA [Helicobacter pylori
Gambia94/24]
Length = 164
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 105/156 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIISNAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|238026780|ref|YP_002911011.1| transcription elongation factor GreA [Burkholderia glumae BGR1]
gi|237875974|gb|ACR28307.1| Transcription elongation factor GreA [Burkholderia glumae BGR1]
Length = 158
Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +++++EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGAEQLREELQRLKSIERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A++ID S + R+ F ATV L + SGD YQIVGD EAD+ GL+
Sbjct: 61 RIAELESKLSAAQIIDPSVLDAEGRVVFAATVELEDLESGDTVKYQIVGDDEADIDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158
>gi|290473438|ref|YP_003466305.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Xenorhabdus bovienii SS-2004]
gi|289172738|emb|CBJ79509.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Xenorhabdus bovienii SS-2004]
Length = 158
Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G DK+++EL + RP+II AI++ARA+GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGADKLREELENLKNVRRPKIITAIADARAHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ ++ R+ FGATV+++ S +++ Y+IVGD EA+++ L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMINNGRVIFGATVTVLNMGSDEEQTYRIVGDDEANIKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D+ ++ PGG+ YE+L V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVAVISTPGGKVEYEVLNVEYL 158
>gi|254465444|ref|ZP_05078855.1| transcription elongation factor GreA [Rhodobacterales bacterium
Y4I]
gi|206686352|gb|EDZ46834.1| transcription elongation factor GreA [Rhodobacterales bacterium
Y4I]
Length = 156
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 77/156 (49%), Positives = 121/156 (77%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MEKIPMTPAGHAALESELKTLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ A+VI+ + ++G I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGILSLADVINPAKLNG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGK+ GD + V PGGE++YEIL++++
Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGERSYEILKIVY 155
>gi|317182174|dbj|BAJ59958.1| transcription elongation factor GreA [Helicobacter pylori F57]
Length = 164
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 105/156 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II A+VID ST++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIIANAQVIDPSTLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|319763187|ref|YP_004127124.1| transcription elongation factor grea [Alicycliphilus denitrificans
BC]
gi|330825250|ref|YP_004388553.1| transcription elongation factor GreA [Alicycliphilus denitrificans
K601]
gi|317117748|gb|ADV00237.1| transcription elongation factor GreA [Alicycliphilus denitrificans
BC]
gi|329310622|gb|AEB85037.1| transcription elongation factor GreA [Alicycliphilus denitrificans
K601]
Length = 158
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G ++++QEL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EG
Sbjct: 1 MATIPITKRGAEQLKQELHRLKTVERPAVINAIAEARAQGDLSENAEYEAAKDRQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A++ID S + G R+ FGATV L +++SG+ YQIVG+ EAD++ GL+
Sbjct: 61 RILEIEGKLSAAQIIDPSELDAGGRVVFGATVELEDEDSGEAVRYQIVGEDEADLKHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++SSPIARALIGKE GD V APGG + YE++ V ++
Sbjct: 121 NVSSPIARALIGKEEGDTAEVQAPGGVRRYEVVSVSYV 158
>gi|313144398|ref|ZP_07806591.1| transcription elongation factor greA [Helicobacter cinaedi CCUG
18818]
gi|313129429|gb|EFR47046.1| transcription elongation factor greA [Helicobacter cinaedi CCUG
18818]
Length = 162
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 110/157 (70%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + P+T+ G++K+ EL+ ++ ERP+I+ I AR++GDL ENAEY AA+E Q E
Sbjct: 1 MAE--PMTNYGYEKLCAELKNLKEVERPKIVVEIDVARSHGDLKENAEYHAAREKQAFIE 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ EL ++++A+VID +++ ++++FG++V ++ ++ + Y +VG E++ GL+
Sbjct: 59 ARINELGLMLSQAQVIDPASLKHNKVSFGSSVKILNLDTDKEFVYTLVGSMESNPSKGLI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+SSPIA+AL+GK+ GD +S+ P GE +EIL+V +
Sbjct: 119 SVSSPIAKALMGKKQGDEVSIMLPSGENEFEILEVFY 155
>gi|83854862|ref|ZP_00948392.1| transcription elongation factor GreA [Sulfitobacter sp. NAS-14.1]
gi|83941385|ref|ZP_00953847.1| transcription elongation factor GreA [Sulfitobacter sp. EE-36]
gi|83842705|gb|EAP81872.1| transcription elongation factor GreA [Sulfitobacter sp. NAS-14.1]
gi|83847205|gb|EAP85080.1| transcription elongation factor GreA [Sulfitobacter sp. EE-36]
Length = 156
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 85/156 (54%), Positives = 122/156 (78%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ EL+ + ERP IIKAI+EAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPMTRAGHTALETELKHLKSVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ A+VID + MSG I FGATV+LV++++ ++K YQIVG+ EA+++ GL++
Sbjct: 61 RIKELEGVISLADVIDPAKMSG-AIKFGATVTLVDEDTDEEKTYQIVGEYEANIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGKE GD + V PGG+K+YE+L++++
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGDKSYEVLKIVY 155
>gi|307637553|gb|ADN80003.1| Transcription elongation factor [Helicobacter pylori 908]
gi|325996144|gb|ADZ51549.1| Transcription elongation factor [Helicobacter pylori 2018]
gi|325997740|gb|ADZ49948.1| Transcription elongation factor [Helicobacter pylori 2017]
Length = 164
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 106/156 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICTELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II+ A+VID S ++ ++++FG+T+ ++ ++G + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIISNAQVIDPSALAHNKVSFGSTIKILNLDNGKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|326317398|ref|YP_004235070.1| transcription elongation factor GreA [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323374234|gb|ADX46503.1| transcription elongation factor GreA [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 158
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 81/157 (51%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EG
Sbjct: 1 MATIPITKRGAEKLKEELHRLKTVERPAVINAIAEARAQGDLSENAEYEAAKDRQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID + + G ++ FGATV L ++ SGD YQIVG+ EAD++ GL+
Sbjct: 61 RIQEVEGKLSAAQVIDPAQLDAGGKVVFGATVDLEDEESGDPVTYQIVGEDEADLKQGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++SSPIARALIGKE GD V APGG + YE++ V +
Sbjct: 121 NVSSPIARALIGKEEGDTAEVQAPGGLRRYEVVAVRY 157
>gi|254708169|ref|ZP_05169997.1| transcription elongation factor GreA [Brucella pinnipedialis
M163/99/10]
gi|254710541|ref|ZP_05172352.1| transcription elongation factor GreA [Brucella pinnipedialis B2/94]
gi|254714723|ref|ZP_05176534.1| transcription elongation factor GreA [Brucella ceti M644/93/1]
gi|254717784|ref|ZP_05179595.1| transcription elongation factor GreA [Brucella ceti M13/05/1]
gi|256032034|ref|ZP_05445648.1| transcription elongation factor GreA [Brucella pinnipedialis
M292/94/1]
gi|256160231|ref|ZP_05457925.1| transcription elongation factor GreA [Brucella ceti M490/95/1]
gi|256255437|ref|ZP_05460973.1| transcription elongation factor GreA [Brucella ceti B1/94]
gi|260169170|ref|ZP_05755981.1| transcription elongation factor GreA [Brucella sp. F5/99]
gi|261219633|ref|ZP_05933914.1| transcription elongation factor grea [Brucella ceti M13/05/1]
gi|261222642|ref|ZP_05936923.1| transcription elongation factor grea [Brucella ceti B1/94]
gi|261315677|ref|ZP_05954874.1| transcription elongation factor grea [Brucella pinnipedialis
M163/99/10]
gi|261318115|ref|ZP_05957312.1| transcription elongation factor grea [Brucella pinnipedialis B2/94]
gi|261322521|ref|ZP_05961718.1| transcription elongation factor grea [Brucella ceti M644/93/1]
gi|261758684|ref|ZP_06002393.1| transcription elongation factor greA [Brucella sp. F5/99]
gi|265989145|ref|ZP_06101702.1| transcription elongation factor grea [Brucella pinnipedialis
M292/94/1]
gi|265998607|ref|ZP_06111164.1| transcription elongation factor grea [Brucella ceti M490/95/1]
gi|260921226|gb|EEX87879.1| transcription elongation factor grea [Brucella ceti B1/94]
gi|260924722|gb|EEX91290.1| transcription elongation factor grea [Brucella ceti M13/05/1]
gi|261295211|gb|EEX98707.1| transcription elongation factor grea [Brucella ceti M644/93/1]
gi|261297338|gb|EEY00835.1| transcription elongation factor grea [Brucella pinnipedialis B2/94]
gi|261304703|gb|EEY08200.1| transcription elongation factor grea [Brucella pinnipedialis
M163/99/10]
gi|261738668|gb|EEY26664.1| transcription elongation factor greA [Brucella sp. F5/99]
gi|262553231|gb|EEZ09065.1| transcription elongation factor grea [Brucella ceti M490/95/1]
gi|264661342|gb|EEZ31603.1| transcription elongation factor grea [Brucella pinnipedialis
M292/94/1]
Length = 157
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 100/157 (63%), Positives = 136/157 (86%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISS IARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ISSLIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 157
>gi|95929152|ref|ZP_01311896.1| transcription elongation factor GreA [Desulfuromonas acetoxidans
DSM 684]
gi|95134650|gb|EAT16305.1| transcription elongation factor GreA [Desulfuromonas acetoxidans
DSM 684]
Length = 158
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 116/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D +P+T + + ++Q+EL+ R + +RP++++ I+EAR++GDLSENAEY AAK+ Q E
Sbjct: 1 MSDSVPMTPECYARLQEELKNRIKVDRPKVVQDIAEARSHGDLSENAEYDAAKDRQAHIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AEL + + RAEVID +++ D+I FGATV+L + +S ++ YQIVG+ EAD++ G +
Sbjct: 61 GRIAELNDKLARAEVIDPKSINTDKIVFGATVTLFDTDSDNEVVYQIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SP+ +ALIG L D + +N P G + YE+ ++ +
Sbjct: 121 SVTSPVGKALIGHTLDDEVRINVPSGTRIYEVTEIEY 157
>gi|322831206|ref|YP_004211233.1| transcription elongation factor GreA [Rahnella sp. Y9602]
gi|321166407|gb|ADW72106.1| transcription elongation factor GreA [Rahnella sp. Y9602]
Length = 158
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +++++EL + RP+II I+ AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKPIPMTLRGAERLREELDHLKSVRRPKIISDIATAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M R+ FGATV+++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMPATGRVIFGATVTVMNLDTEEEQKYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++ + PGG+ +E+L+V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGDVEFEVLKVEYL 158
>gi|317046732|ref|YP_004114380.1| GreA/GreB family elongation factor [Pantoea sp. At-9b]
gi|316948349|gb|ADU67824.1| GreA/GreB family elongation factor [Pantoea sp. At-9b]
Length = 158
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T KG +K+++EL + +RPRII +I+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLKGAEKLREELNELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M R+ FGATV ++ ++ ++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVQVLNLDTDEESTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR L+GKE D+ + PGG+ YEIL+V ++
Sbjct: 121 SVNSPMARGLVGKEADDVAIIKTPGGDVEYEILKVEYL 158
>gi|296136187|ref|YP_003643429.1| GreA/GreB family elongation factor [Thiomonas intermedia K12]
gi|295796309|gb|ADG31099.1| GreA/GreB family elongation factor [Thiomonas intermedia K12]
Length = 158
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 85/158 (53%), Positives = 116/158 (73%), Gaps = 2/158 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M+ P+T KG ++++QEL + ERP +I+AI+EARA GDLSENAEY AA++ Q E
Sbjct: 1 MM-ATPMTRKGAEQLKQELHRLKTIERPAVIQAIAEARAQGDLSENAEYDAARDKQGFIE 59
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+A++E + A++ID S + D R+ FGATV L +++SGD+ YQIVGD EAD++ G
Sbjct: 60 GRIADIEGKLGTAQIIDPSELRADGRVVFGATVELSDESSGDEITYQIVGDDEADLKQGR 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SI+SPIARALIGKE GD+ V APGG + YEIL V +
Sbjct: 120 ISINSPIARALIGKESGDVAQVAAPGGVRQYEILAVHY 157
>gi|291613526|ref|YP_003523683.1| transcription elongation factor GreA [Sideroxydans lithotrophicus
ES-1]
gi|291583638|gb|ADE11296.1| transcription elongation factor GreA [Sideroxydans lithotrophicus
ES-1]
Length = 158
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 85/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T G + ++QEL + +RP +I AISEARA GDLSENAEY+AAKE Q+ EG
Sbjct: 1 MSKVPLTVNGAELLRQELHRLKTVDRPSVINAISEARAQGDLSENAEYEAAKERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE + A+VID T++ D R FG+TV + + N+GD YQIVGD EAD++ +
Sbjct: 61 RIVELEFKLGSAQVIDPKTVNADGRCVFGSTVVIEDTNNGDVVTYQIVGDDEADIKQRKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GDI V APGG + YE++ V +I
Sbjct: 121 SISSPIARALIGKVSGDIAEVQAPGGIREYEVVDVQYI 158
>gi|261837908|gb|ACX97674.1| transcription elongation factor [Helicobacter pylori 51]
gi|317180628|dbj|BAJ58414.1| transcription elongation factor GreA [Helicobacter pylori F32]
gi|332673330|gb|AEE70147.1| transcription elongation factor GreA [Helicobacter pylori 83]
Length = 164
Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIIANAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|171463553|ref|YP_001797666.1| transcription elongation factor GreA [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171193091|gb|ACB44052.1| transcription elongation factor GreA [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 158
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G + +++EL + ERP +I AISEARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPITKRGAELLKEELHRLKHVERPAVINAISEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE ++ A++ID +++ R+ FGATV L + G + YQIVGD EAD+ S +
Sbjct: 61 RIQELEGKLSAAQIIDPASLDITGRVVFGATVDLKDLEDGTRLTYQIVGDDEADIASNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALI KE GD+++V APGG + EIL V ++
Sbjct: 121 SISSPIARALISKEEGDVVAVQAPGGNREVEILAVRYV 158
>gi|330816264|ref|YP_004359969.1| Transcription elongation factor GreA [Burkholderia gladioli BSR3]
gi|327368657|gb|AEA60013.1| Transcription elongation factor GreA [Burkholderia gladioli BSR3]
Length = 158
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G ++++ EL+ + ERP +I AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTKRGAEQLRSELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ ++ A+VID S + R+ FGATV L + S YQIVGD EAD+ GL+
Sbjct: 61 RIAEIESKLSAAQVIDPSVIDAEGRVVFGATVELEDLGSSATVKYQIVGDDEADIDHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V AP G + YEI+ V ++
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYV 158
>gi|126728314|ref|ZP_01744130.1| transcription elongation factor GreA [Sagittula stellata E-37]
gi|126711279|gb|EBA10329.1| transcription elongation factor GreA [Sagittula stellata E-37]
Length = 156
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 117/156 (75%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKI +T GF ++ EL+ + ERP II+AISEAR GDL ENAEY +A+E Q EG
Sbjct: 1 MDKILITRAGFTALEAELKQLKSVERPAIIQAISEARELGDLKENAEYHSAREKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++I AEVID +++SG + FGATV++V++++ ++K +QIVG+ EA ++ GL++
Sbjct: 61 RIKELESVIGLAEVIDPASLSGS-VKFGATVTVVDEDTDEEKTWQIVGEHEASIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIARALIGKE GD + V PGGEK+YEIL V +
Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGEKSYEILSVSY 155
>gi|300703811|ref|YP_003745413.1| transcription elongation factor [Ralstonia solanacearum CFBP2957]
gi|299071474|emb|CBJ42794.1| transcription elongation factor [Ralstonia solanacearum CFBP2957]
Length = 158
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G + ++ EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EG
Sbjct: 1 MSTIPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ + A+VID +++ D RI FGAT+ L + +SG YQIVGD EAD+ +G +
Sbjct: 61 RILEIESKLAAAQVIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ +V APGGE+ YE+ V ++
Sbjct: 121 SISSPIARALIGKYEGDVATVVAPGGEREYEVRSVKYL 158
>gi|50119643|ref|YP_048810.1| transcription elongation factor GreA [Pectobacterium atrosepticum
SCRI1043]
gi|49610169|emb|CAG73609.1| transcription elongation factor [Pectobacterium atrosepticum
SCRI1043]
Length = 159
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 113/159 (71%), Gaps = 2/159 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +K+++EL + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQYPMTLRGAEKLREELDHLKSVRRPEIITAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM--SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ ++E ++ A++ID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L
Sbjct: 61 RIQDIEAKLSNAQIIDVTKMAANNGRVIFGATVAVMNLDSEEEQTYRIVGDDEADFKQNL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIAR LIGKE D++ + PGG+ YE+L+V ++
Sbjct: 121 ISVNSPIARGLIGKEQDDVVVIRTPGGDVEYEVLKVEYL 159
>gi|120611280|ref|YP_970958.1| transcription elongation factor GreA [Acidovorax citrulli AAC00-1]
gi|120589744|gb|ABM33184.1| transcription elongation factor GreA [Acidovorax citrulli AAC00-1]
Length = 158
Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats.
Identities = 82/157 (52%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + ERP +I AI+EARA GDLSENAEY+AAK+ Q EG
Sbjct: 1 MATIPITKRGAEKLKEELHRLKTVERPAVINAIAEARAQGDLSENAEYEAAKDRQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID + + G R+ FGATV L ++ SGD YQIVG+ EAD++ GL+
Sbjct: 61 RIQEVEGKLSAAQVIDPAQLDAGGRVVFGATVDLEDEESGDLVTYQIVGEDEADLKQGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++SSPIARALIGKE GD V APGG + YE++ V +
Sbjct: 121 NVSSPIARALIGKEEGDTAEVQAPGGLRRYEVVAVRY 157
>gi|292486826|ref|YP_003529696.1| transcription elongation factor greA [Erwinia amylovora CFBP1430]
gi|292900775|ref|YP_003540144.1| transcription elongation factor [Erwinia amylovora ATCC 49946]
gi|291200623|emb|CBJ47755.1| transcription elongation factor [Erwinia amylovora ATCC 49946]
gi|291552243|emb|CBA19280.1| Transcription elongation factor greA [Erwinia amylovora CFBP1430]
gi|312170894|emb|CBX79153.1| Transcription elongation factor greA [Erwinia amylovora ATCC
BAA-2158]
Length = 160
Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats.
Identities = 71/160 (44%), Positives = 115/160 (71%), Gaps = 3/160 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G DK+++EL + +RPRII +I+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGADKLREELEELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
R+ E+E ++ A+VID++ M+G+ R+ FGATV+++ + ++ Y+IVGD EAD +
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMAGNANGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQN 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
L+S++SP+AR L+GK D+ + PGG+ YEI++V ++
Sbjct: 121 LISVNSPMARGLVGKLADDVTVIKTPGGDVEYEIIKVEYL 160
>gi|237749802|ref|ZP_04580282.1| transcription elongation factor GreA [Helicobacter bilis ATCC
43879]
gi|229374552|gb|EEO24943.1| transcription elongation factor GreA [Helicobacter bilis ATCC
43879]
Length = 161
Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 108/157 (68%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + P++ GF+K+ QEL+ ++ +RP++ + I AR++GDL ENAEY AAKE Q E
Sbjct: 1 MTE--PMSKYGFNKLTQELKDLKEVQRPKVAQEIDIARSHGDLKENAEYHAAKEKQAFIE 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ EL +++ A+VID ST+ D+++FG+T++++ N+ + Y IVG E++ GL+
Sbjct: 59 FKINELSKMLSNAQVIDPSTLPHDKVSFGSTITILNLNTDKEVVYTIVGTTESNPSKGLI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+A+ LIGKE GD + +N P GE +EIL++ +
Sbjct: 119 SFNSPLAKELIGKEEGDEVIINLPAGETEFEILKIEY 155
>gi|114771295|ref|ZP_01448715.1| transcription elongation factor GreA [alpha proteobacterium
HTCC2255]
gi|114548220|gb|EAU51107.1| transcription elongation factor GreA [alpha proteobacterium
HTCC2255]
Length = 156
Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats.
Identities = 82/157 (52%), Positives = 119/157 (75%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T GF EL+ + +RP +IKAI+EAR +GDLSENAEY +A+ELQ+ EG
Sbjct: 1 MDKIPMTPAGFKSADNELKQLKSVDRPSVIKAIAEAREHGDLSENAEYHSARELQSHIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE II+ A++ID+S +SG+ + FGATV LV++++ ++ QIVG+ EA++++ ++
Sbjct: 61 RIKELEAIISLAQIIDVSKLSGN-VKFGATVHLVDEDTDAERTLQIVGEHEANIENNQIN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++SPIARALIGKE GD + V PGG K+YEIL V +I
Sbjct: 120 MNSPIARALIGKEEGDSVEVRTPGGVKSYEILSVKFI 156
>gi|118580935|ref|YP_902185.1| transcription elongation factor GreA [Pelobacter propionicus DSM
2379]
gi|229485902|sp|A1AS07|GREA_PELPD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|118503645|gb|ABL00128.1| transcription elongation factor GreA [Pelobacter propionicus DSM
2379]
Length = 158
Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 109/157 (69%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M IP+T + ++ +Q+EL+ + ERP++I+ I+EAR++GDLSENAEY AAK Q E
Sbjct: 1 MSHSIPLTKESYESLQEELKRLIRVERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL + + RA V+D+S M D++ FG+TV+L + S ++ Y+IVG+ EAD++ G +
Sbjct: 61 GRIQELNSKLARAYVVDLSNMKPDKVVFGSTVTLYDTASEEEITYKIVGEDEADIKLGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+ +ALIG +L D + V P G K YEI+ + +
Sbjct: 121 SCTSPVGKALIGHKLDDSVKVKVPAGTKEYEIIDIKY 157
>gi|300691215|ref|YP_003752210.1| transcription elongation factor [Ralstonia solanacearum PSI07]
gi|299078275|emb|CBJ50923.1| transcription elongation factor [Ralstonia solanacearum PSI07]
Length = 158
Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G + +++EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EG
Sbjct: 1 MSTIPITKRGAEMLKEELQRLKTKERPAVVTAIAEARAQGDLSENADYDAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A+VID +++ D RI FGAT+ L + +SG YQIVGD EAD+++G +
Sbjct: 61 RIQEIESKLSAAQVIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLETGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ +V APGGE+ YE+L V ++
Sbjct: 121 SISSPIARALIGKLEGDVATVIAPGGEREYEVLAVKYL 158
>gi|291287665|ref|YP_003504481.1| transcription elongation factor GreA [Denitrovibrio acetiphilus DSM
12809]
gi|290884825|gb|ADD68525.1| transcription elongation factor GreA [Denitrovibrio acetiphilus DSM
12809]
Length = 157
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 77/156 (49%), Positives = 119/156 (76%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+IP+T++G+ ++++EL + +R I+ AI+EAR++GDLSENAEY AAKE Q + E
Sbjct: 1 MDRIPITTEGYARLKKELEKLKTIDRKEIVAAIAEARSHGDLSENAEYDAAKERQGMIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ + R +VID ++SGD+I FGATV++ + ++KNY+IVG EA++ +G +S
Sbjct: 61 RIAELESKMGRFQVIDTKSLSGDKIVFGATVTIENIETEEQKNYKIVGPDEANISNGTIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ K++GD + V APGGE YE+L+V +
Sbjct: 121 IMSPLARALVNKKVGDEVLVVAPGGELEYEVLEVKF 156
>gi|296113338|ref|YP_003627276.1| transcription elongation factor GreA [Moraxella catarrhalis RH4]
gi|295921032|gb|ADG61383.1| transcription elongation factor GreA [Moraxella catarrhalis RH4]
gi|326560322|gb|EGE10710.1| transcription elongation factor GreA [Moraxella catarrhalis 7169]
gi|326562019|gb|EGE12349.1| transcription elongation factor GreA [Moraxella catarrhalis
103P14B1]
gi|326563561|gb|EGE13820.1| transcription elongation factor GreA [Moraxella catarrhalis
12P80B1]
gi|326566359|gb|EGE16509.1| transcription elongation factor GreA [Moraxella catarrhalis BC1]
gi|326570169|gb|EGE20214.1| transcription elongation factor GreA [Moraxella catarrhalis BC8]
gi|326570907|gb|EGE20931.1| transcription elongation factor GreA [Moraxella catarrhalis BC7]
gi|326574514|gb|EGE24456.1| transcription elongation factor GreA [Moraxella catarrhalis
101P30B1]
gi|326575898|gb|EGE25821.1| transcription elongation factor GreA [Moraxella catarrhalis CO72]
gi|326576362|gb|EGE26271.1| transcription elongation factor GreA [Moraxella catarrhalis O35E]
Length = 158
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G ++ EL+ + ERPRI AI+EAR +GDL ENAEY AA+E Q E
Sbjct: 1 MQRYPMTPEGHKALEDELKQLKTVERPRITTAIAEAREHGDLKENAEYHAAREQQGFCEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID + + R+ FG TV L + G K+ Y+IVGD EAD + G +
Sbjct: 61 RIRDIEAKLSGAQIIDPAKLPKEGRVVFGVTVVLENMDDGAKRRYKIVGDDEADFKVGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIAR LIGK GD + P G +EIL+V++
Sbjct: 121 SVNSPIARGLIGKSEGDEAKIQTPSGLAEFEILEVIY 157
>gi|254476447|ref|ZP_05089833.1| transcription elongation factor GreA [Ruegeria sp. R11]
gi|214030690|gb|EEB71525.1| transcription elongation factor GreA [Ruegeria sp. R11]
Length = 156
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 79/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MEKIPMTPTGHAALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ A+VI+ + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGILSLADVINPAKLSGS-IKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGKE GD + V PGGE++YEIL +++
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGERSYEILTIVY 155
>gi|289207885|ref|YP_003459951.1| transcription elongation factor GreA [Thioalkalivibrio sp. K90mix]
gi|288943516|gb|ADC71215.1| transcription elongation factor GreA [Thioalkalivibrio sp. K90mix]
Length = 159
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T G +K++ EL+ + E+RPR++ AI+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MNKTPLTVTGAEKMKAELKKLKGEDRPRVVNAIAEAREHGDLKENAEYHAAREQQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE ++ A++ID++ + ++ FG TV L G + Y+IVG+ EAD++ ++
Sbjct: 61 RIRELEGKLSNAQIIDVTALPQTGKVVFGVTVVLEATEDGRQVTYKIVGEDEADIKQNMI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGKE GD+++V APGGE YEIL+V ++
Sbjct: 121 SVSSPIARALIGKEEGDVVTVQAPGGETEYEILEVRYV 158
>gi|197287221|ref|YP_002153093.1| transcription elongation factor [Proteus mirabilis HI4320]
gi|227357084|ref|ZP_03841454.1| transcription elongation factor [Proteus mirabilis ATCC 29906]
gi|194684708|emb|CAR46682.1| transcription elongation factor [Proteus mirabilis HI4320]
gi|227162776|gb|EEI47739.1| transcription elongation factor [Proteus mirabilis ATCC 29906]
Length = 158
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T G +K+++EL + + RP I AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTVLGAEKLREELEYLKSVRRPEITAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M+ + RI FGATV+L+ ++ +++ Y+IVGD EA+++ L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMTNNGRIIFGATVTLLNVDTEEEQKYRIVGDDEANIKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKEL D++ +N PGG+ YE+L V +I
Sbjct: 121 SVNSPIARGLIGKELDDVVVINTPGGQVEYEVLNVEYI 158
>gi|189425137|ref|YP_001952314.1| transcription elongation factor GreA [Geobacter lovleyi SZ]
gi|238692107|sp|B3E3H5|GREA_GEOLS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189421396|gb|ACD95794.1| transcription elongation factor GreA [Geobacter lovleyi SZ]
Length = 158
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 112/157 (71%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + IP+T + ++ +Q+EL+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E
Sbjct: 1 MSNNIPLTKESYEALQEELKRLIREERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL+ + RA V+D++ + D++ FGATV+L + S ++ Y+IVG+ EAD++ G +
Sbjct: 61 GRIQELQGKLARAHVVDLTGLKPDKVVFGATVTLYDTASEEEITYKIVGEDEADIKLGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+ +ALIG +L D + V P G K YEI+++ +
Sbjct: 121 SCTSPVGKALIGHKLDDSVKVKVPAGTKEYEIIEIKY 157
>gi|188532495|ref|YP_001906292.1| Transcription elongation factor GreA [Erwinia tasmaniensis Et1/99]
gi|188027537|emb|CAO95384.1| Transcription elongation factor GreA [Erwinia tasmaniensis Et1/99]
Length = 160
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 70/160 (43%), Positives = 115/160 (71%), Gaps = 3/160 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G DK+++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGADKLREELEELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
R+ E+E ++ A+VID++ M+G+ R+ FGATV+++ + ++ Y+IVGD EAD +
Sbjct: 61 RIQEIEAKLSNAQVIDVTQMAGNANGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQN 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
L+S++SP+AR L+GK D+ + PGG+ YEI++V ++
Sbjct: 121 LISVNSPMARGLVGKVADDVTVIKTPGGDVEYEIVKVEYL 160
>gi|15611867|ref|NP_223518.1| transcription elongation factor GreA [Helicobacter pylori J99]
gi|15645485|ref|NP_207660.1| transcription elongation factor GreA [Helicobacter pylori 26695]
gi|254779167|ref|YP_003057272.1| transcription elongation factor GreA [Helicobacter pylori B38]
gi|54037216|sp|P64276|GREA_HELPJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54041324|sp|P64275|GREA_HELPY RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|2313994|gb|AAD07908.1| transcription elongation factor GreA (greA) [Helicobacter pylori
26695]
gi|4155364|gb|AAD06376.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIPT CLEAVAGE FACTOR)
[Helicobacter pylori J99]
gi|254001078|emb|CAX29025.1| Transcription elongation factor GreA (Transcript cleavage factor
GreA) [Helicobacter pylori B38]
gi|261839321|gb|ACX99086.1| transcription elongation factor GreA [Helicobacter pylori 52]
Length = 164
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 66/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIVANAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|188527289|ref|YP_001909976.1| transcription elongation factor GreA [Helicobacter pylori Shi470]
gi|238691911|sp|B2USW4|GREA_HELPS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|188143529|gb|ACD47946.1| transcription elongation factor GreA [Helicobacter pylori Shi470]
gi|308062190|gb|ADO04078.1| transcription elongation factor GreA [Helicobacter pylori Cuz20]
Length = 164
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIIANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPSKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|197122524|ref|YP_002134475.1| transcription elongation factor GreA [Anaeromyxobacter sp. K]
gi|220917309|ref|YP_002492613.1| transcription elongation factor GreA [Anaeromyxobacter dehalogenans
2CP-1]
gi|238689850|sp|B4UCU9|GREA_ANASK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|196172373|gb|ACG73346.1| transcription elongation factor GreA [Anaeromyxobacter sp. K]
gi|219955163|gb|ACL65547.1| transcription elongation factor GreA [Anaeromyxobacter dehalogenans
2CP-1]
Length = 166
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 84/157 (53%), Positives = 119/157 (75%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ ++P+T G +++ ELR + ERP+I+K I+EARA+GDLSENAEY AAKE Q+ EG
Sbjct: 1 MQRVPMTKGGLVRLKDELRRLKSVERPKIVKEIAEARAHGDLSENAEYHAAKEKQSHIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+A++E+ I AEVID++ +GDR+ FGATVSL + SGD+ Y+IVG+ EAD++ G +S
Sbjct: 61 RIAQVEHWIASAEVIDVTKHAGDRVVFGATVSLEDAESGDQVTYRIVGELEADLKQGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++SPIARALIG+ GD + V +PGGEK YEI V ++
Sbjct: 121 VTSPIARALIGRSEGDTVVVRSPGGEKEYEIQSVAFV 157
>gi|15616988|ref|NP_240201.1| transcription elongation factor GreA [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219681740|ref|YP_002468126.1| transcription elongation factor GreA [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682295|ref|YP_002468679.1| transcription elongation factor GreA [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471441|ref|ZP_05635440.1| transcription elongation factor GreA [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|11386814|sp|P57464|GREA_BUCAI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799549|sp|B8D9G7|GREA_BUCA5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799550|sp|B8D7R9|GREA_BUCAT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|25321409|pir||G84974 transcription elongation factor greA [imported] - Buchnera sp.
(strain APS)
gi|10039053|dbj|BAB13087.1| transcription elongation factor greA [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|219622028|gb|ACL30184.1| transcription elongation factor GreA [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624583|gb|ACL30738.1| transcription elongation factor GreA [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311086121|gb|ADP66203.1| transcription elongation factor GreA [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311086694|gb|ADP66775.1| transcription elongation factor GreA [Buchnera aphidicola str.
TLW03 (Acyrthosiphon pisum)]
gi|311087279|gb|ADP67359.1| transcription elongation factor GreA [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087791|gb|ADP67870.1| transcription elongation factor GreA [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 159
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 72/159 (45%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++ IP+T +G +K+++EL+ + RPRII AI+EAR +GDL ENAEY +A+E Q+ E
Sbjct: 1 MINLIPMTVRGAEKLRRELKKLKSINRPRIIAAIAEAREHGDLKENAEYHSAREEQSFCE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E ++ +++ID++ +S + R+ FG+TVS++ + +K Y+IVGD E+D + L
Sbjct: 61 GRIKEIELKLSNSQIIDVTKISNNGRVIFGSTVSILNIKNNEKFTYRIVGDDESDFKKNL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SI+SPIAR LIGKE+ D++ + PGG+ Y+IL++ +I
Sbjct: 121 ISINSPIARGLIGKEINDVVIICTPGGDVEYKILKINYI 159
>gi|15893255|ref|NP_360969.1| transcription elongation factor GreA [Rickettsia conorii str.
Malish 7]
gi|157829162|ref|YP_001495404.1| transcription elongation factor GreA [Rickettsia rickettsii str.
'Sheila Smith']
gi|165933891|ref|YP_001650680.1| transcription elongation factor GreA [Rickettsia rickettsii str.
Iowa]
gi|238651107|ref|YP_002916965.1| transcription elongation factor GreA [Rickettsia peacockii str.
Rustic]
gi|15620474|gb|AAL03870.1| transcription elongation factor EF [Rickettsia conorii str. Malish
7]
gi|157801643|gb|ABV76896.1| transcription elongation factor GreA [Rickettsia rickettsii str.
'Sheila Smith']
gi|165908978|gb|ABY73274.1| transcription elongation factor [Rickettsia rickettsii str. Iowa]
gi|238625205|gb|ACR47911.1| transcription elongation factor GreA [Rickettsia peacockii str.
Rustic]
Length = 206
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 80/157 (50%), Positives = 114/157 (72%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 45 MNTKFPITAKGFEKLEHELKHLKHVERKKISADIAEAREHGDLSENAEYEAAREKQAFIE 104
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 105 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 164
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 165 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 201
>gi|238793013|ref|ZP_04636642.1| Transcription elongation factor greA [Yersinia intermedia ATCC
29909]
gi|238727613|gb|EEQ19138.1| Transcription elongation factor greA [Yersinia intermedia ATCC
29909]
Length = 158
Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVNGAEKLREELDFLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M + R+ FGATV ++ +S +++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDITRMPNNGRVIFGATVRVLNVDSEEEQQYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D++ + PGGE YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILSVDYV 158
>gi|86158153|ref|YP_464938.1| transcription elongation factor GreA [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774664|gb|ABC81501.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-C]
Length = 166
Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats.
Identities = 84/157 (53%), Positives = 119/157 (75%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ ++P+T G +++ ELR + ERP+I+K I+EARA+GDLSENAEY AAKE Q+ EG
Sbjct: 1 MQRVPMTKGGLVRLKDELRRLKSVERPKIVKEIAEARAHGDLSENAEYHAAKEKQSHIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+A++E+ I AEVID++ +GDR+ FGATVSL + SGD+ Y+IVG+ EAD++ G +S
Sbjct: 61 RIAQVEHWIASAEVIDVTKHAGDRVVFGATVSLEDTESGDQVTYRIVGELEADLKQGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++SPIARALIG+ GD + V +PGGEK YEI V ++
Sbjct: 121 VTSPIARALIGRSEGDTVVVRSPGGEKEYEIQSVAFV 157
>gi|187929112|ref|YP_001899599.1| transcription elongation factor GreA [Ralstonia pickettii 12J]
gi|187726002|gb|ACD27167.1| transcription elongation factor GreA [Ralstonia pickettii 12J]
Length = 158
Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G + ++ EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EG
Sbjct: 1 MSTIPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A++ID +++ R+ FGAT+ L + +SG YQIVGD EAD++ G +
Sbjct: 61 RIQEIESKLSAAQIIDPASLDAEGRVVFGATIDLEDLDSGKPVTYQIVGDDEADIEIGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ +V APGGE+ YE+L V ++
Sbjct: 121 SISSPIARALIGKLEGDVATVVAPGGEREYEVLAVKYL 158
>gi|167855522|ref|ZP_02478284.1| transcription elongation factor GreA [Haemophilus parasuis 29755]
gi|219871300|ref|YP_002475675.1| transcription elongation factor GreA [Haemophilus parasuis SH0165]
gi|167853323|gb|EDS24575.1| transcription elongation factor GreA [Haemophilus parasuis 29755]
gi|219691504|gb|ACL32727.1| transcription elongation factor GreA [Haemophilus parasuis SH0165]
Length = 158
Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +++++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGAEQLREELDFLKNVRRPEIISAITEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ + A++ID+ ++ ++ FG+TV+L+ N+ + Y+IVGD EA+++ GL+
Sbjct: 61 RIKEIESKLGNAQIIDVKNMINTGKVIFGSTVTLLNVNTDECVTYRIVGDDEANIKDGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKE+ D + + PGG ++I++V +I
Sbjct: 121 SVNSPIARGLVGKEIDDNVHIQTPGGNVEFDIIKVEYI 158
>gi|89070192|ref|ZP_01157520.1| transcription elongation factor GreA [Oceanicola granulosus
HTCC2516]
gi|89044208|gb|EAR50359.1| transcription elongation factor GreA [Oceanicola granulosus
HTCC2516]
Length = 156
Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats.
Identities = 88/157 (56%), Positives = 122/157 (77%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T GFDK+ EL+ + ERP II+AISEAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MDKIPLTRAGFDKLDAELKHLKSVERPAIIRAISEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ AEVID + MSG I FGATV LV++++ ++K+YQIVG+ EAD++ G ++
Sbjct: 61 RIKELEGVISLAEVIDPTRMSG-AIKFGATVELVDEDTDEEKSYQIVGEYEADIERGKLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SP+ARALIGKE GD + V PGG+K YE+++V ++
Sbjct: 120 MKSPLARALIGKEEGDSVEVKTPGGDKAYEVVKVSYV 156
>gi|85705718|ref|ZP_01036815.1| transcription elongation factor GreA [Roseovarius sp. 217]
gi|85669708|gb|EAQ24572.1| transcription elongation factor GreA [Roseovarius sp. 217]
Length = 156
Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats.
Identities = 83/157 (52%), Positives = 121/157 (77%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T+ G ++ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPMTAGGHAALEVELKQLKSVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ AEVID + +SG I FGATV+LV++++ +++ YQIVG+ EA ++ GL++
Sbjct: 61 RIKELEGILSLAEVIDPAKLSG-AIKFGATVTLVDEDTDEERTYQIVGEHEASIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SPIARALIGKE GD + V PGG++ YE+++V +I
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGDRAYEVIKVAYI 156
>gi|297539177|ref|YP_003674946.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
gi|297258524|gb|ADI30369.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
Length = 160
Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats.
Identities = 85/158 (53%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V +IPVT KG +++++EL + +RP +I+AI+EARA GDLSENAEY+AAKE Q+ EG
Sbjct: 3 VTQIPVTVKGAEQLKEELLRLRSVDRPWVIQAIAEARAQGDLSENAEYEAAKERQSFIEG 62
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E ++ A +ID ST+ D R FG+TV + + +SG YQIVGD EAD+++G +
Sbjct: 63 RIAEVEAKLSNAMIIDPSTLHADGRCVFGSTVRIEDLDSGSIITYQIVGDDEADIKNGKI 122
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPI+R LIGK GD+ V APGG K YEIL+V +I
Sbjct: 123 SVSSPISRGLIGKSEGDVAEVMAPGGVKEYEILEVQYI 160
>gi|86139026|ref|ZP_01057597.1| transcription elongation factor GreA [Roseobacter sp. MED193]
gi|85824257|gb|EAQ44461.1| transcription elongation factor GreA [Roseobacter sp. MED193]
Length = 156
Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 118/156 (75%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+TS G ++ EL+ + ERP IIKAI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MEKIPMTSAGHTALEAELKNLKSVERPTIIKAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ A+VID + +SG I FGA V+LV++++ ++K +QIVG+ EA+V++GL++
Sbjct: 61 RIKELEGILSLADVIDPAKLSGS-IKFGAKVTLVDEDTDEEKTWQIVGEHEANVEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGKE GD + V PGG + YEIL + +
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGVRGYEILTIHY 155
>gi|326559681|gb|EGE10092.1| transcription elongation factor GreA [Moraxella catarrhalis
46P47B1]
Length = 158
Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G ++ EL+ + ERPRI AI+EAR +GDL ENAEY AA+E Q E
Sbjct: 1 MQRYPMTPEGHKALEDELKQLKTVERPRITTAIAEAREHGDLKENAEYHAAREQQGFCEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID + + R+ FG TV L + G ++ Y+IVGD EAD + G +
Sbjct: 61 RIRDIEAKLSGAQIIDPAKLPKEGRVVFGVTVVLENMDDGARRRYKIVGDDEADFKVGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIAR LIGK GD + P G +EIL+V++
Sbjct: 121 SVNSPIARGLIGKSEGDEAKIQTPSGLAEFEILEVIY 157
>gi|77919210|ref|YP_357025.1| transcription elongation factor GreA [Pelobacter carbinolicus DSM
2380]
gi|123770456|sp|Q3A452|GREA_PELCD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|77545293|gb|ABA88855.1| GreA/GreB family elongation factor [Pelobacter carbinolicus DSM
2380]
Length = 158
Score = 176 bits (448), Expect = 6e-43, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 107/158 (67%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +P+T +G+ +Q EL+ + ERP++++ I+EAR++GDLSENAEY AAK Q E
Sbjct: 1 MSQSVPMTEEGYRSLQDELKHLIRVERPKVVQDIAEARSHGDLSENAEYDAAKNRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL + I RAEVI + D+I FGA+V+L + ++ + Y+IVG+ EAD++ G +
Sbjct: 61 GRIKELNDKIARAEVIKPGDVVTDKIVFGASVTLFDVDTDSEVTYKIVGEDEADLKHGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+ RALIG L D + + P G K YE++ + ++
Sbjct: 121 SVTSPVGRALIGHRLDDEVRIKVPSGLKIYEVVNIAYM 158
>gi|308063340|gb|ADO05227.1| transcription elongation factor GreA [Helicobacter pylori Sat464]
Length = 164
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIIANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|317011079|gb|ADU84826.1| transcription elongation factor GreA [Helicobacter pylori
SouthAfrica7]
Length = 164
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II+ A+VID S ++ +++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIISNAQVIDPSVLTHHKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|254512527|ref|ZP_05124594.1| transcription elongation factor GreA [Rhodobacteraceae bacterium
KLH11]
gi|221536238|gb|EEE39226.1| transcription elongation factor GreA [Rhodobacteraceae bacterium
KLH11]
Length = 156
Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats.
Identities = 77/156 (49%), Positives = 115/156 (73%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ EL+ + ERP II+AI+ AR GDL ENAEY +A+E Q EG
Sbjct: 1 MEKIPMTPAGNAALEAELKNLKSVERPAIIEAIASARELGDLKENAEYHSAREKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ A+VID S ++G I FGA V+LV++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGILSLADVIDPSKLAG-AIKFGAKVTLVDEDTDEEKTWQIVGEYEANIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGKE GD + V PGG ++YE+L + +
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGVRSYEVLSIQY 155
>gi|294340422|emb|CAZ88803.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Thiomonas sp. 3As]
Length = 157
Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats.
Identities = 83/153 (54%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T KG ++++QEL + ERP +I+AI+EARA GDLSENAEY AA++ Q EGR+A+
Sbjct: 4 PMTRKGAEQLKQELHRLKTIERPAVIQAIAEARAQGDLSENAEYDAARDKQGFIEGRIAD 63
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E + A++ID S + D R+ FGATV L +++SGD+ YQIVGD EAD++ G +SI+S
Sbjct: 64 IEGKLGTAQIIDPSELQADGRVVFGATVELSDESSGDEITYQIVGDDEADLKQGRISINS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
PIARALIGKE G++ V APGG + YEIL V +
Sbjct: 124 PIARALIGKESGEVAQVAAPGGVRHYEILAVHY 156
>gi|126734602|ref|ZP_01750348.1| transcription elongation factor GreA [Roseobacter sp. CCS2]
gi|126715157|gb|EBA12022.1| transcription elongation factor GreA [Roseobacter sp. CCS2]
Length = 156
Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 121/156 (77%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T GFDK+ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MDKIPLTQAGFDKLDAELKHLKTVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ A+VID + +SG I FGATV+LV++++ ++K YQIVG+ EAD+++G ++
Sbjct: 61 RVKELEGVISLADVIDPTKLSG-TIKFGATVALVDEDTDEEKTYQIVGEYEADIENGKLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP++RALIGK+ GD + V PGG ++YEIL + +
Sbjct: 120 MKSPLSRALIGKDEGDSVDVRTPGGVRSYEILSIAY 155
>gi|109898530|ref|YP_661785.1| transcription elongation factor GreA [Pseudoalteromonas atlantica
T6c]
gi|109700811|gb|ABG40731.1| transcription elongation factor GreA [Pseudoalteromonas atlantica
T6c]
Length = 158
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T+KG + +++EL+ + +RP IIK+I+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MTQYPMTAKGAEMLREELQHLKSVKRPEIIKSIAEAREHGDLKENAEYHAAREQQSFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ ++ID++ M + ++ FG TV+++ S ++ Y+IVGD EAD+++ L+
Sbjct: 61 RIQDIEGKLSNVQIIDVTKMTNTGKVIFGTTVTILNLQSDEEITYKIVGDDEADIKNNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK+L D++++ P G +EI++V ++
Sbjct: 121 SVSSPIARGLIGKQLDDVVTIQTPKGAIEFEIIEVEYV 158
>gi|21672645|ref|NP_660712.1| transcription elongation factor GreA [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
gi|25008517|sp|Q8K9G6|GREA_BUCAP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|21623280|gb|AAM67923.1| transcription elongation factor GreA [Buchnera aphidicola str. Sg
(Schizaphis graminum)]
Length = 159
Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats.
Identities = 67/159 (42%), Positives = 111/159 (69%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++ IP+T +G +K+++EL + +RPRI I+EAR +GDL ENAEY +A+E Q+ E
Sbjct: 1 MINLIPMTVRGAEKLREELEQLKNVKRPRITVQIAEARKHGDLKENAEYHSAREEQSFCE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E+ ++ +++IDI+ +S D R+ FG+TV+++ + YQIVGD E+D + L
Sbjct: 61 GRIQEIESKLSNSQIIDITKISNDGRVVFGSTVTILNIKNNAVFTYQIVGDDESDFKKNL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SI+SP++R LIGK + I ++ P G Y+IL++ +I
Sbjct: 121 ISINSPMSRGLIGKTVNTIAIIHTPSGNVKYKILKIDYI 159
>gi|163732327|ref|ZP_02139773.1| transcription elongation factor GreA [Roseobacter litoralis Och
149]
gi|161394625|gb|EDQ18948.1| transcription elongation factor GreA [Roseobacter litoralis Och
149]
Length = 156
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 85/156 (54%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T KG ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EG
Sbjct: 1 MDKIPMTRKGHTDLEAELKNLKSVERPAIISAIAEAREHGDLSENAEYHSAREKHSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE ++ AEVID S MSG I FGATV+LV++++ ++K +QIVG+ EA+V+ GL++
Sbjct: 61 RIKELEGVLGLAEVIDPSKMSG-TIKFGATVTLVDEDTDEEKTWQIVGEHEANVEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGK+ GD + V PGGEK YE+L++++
Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGEKAYEVLKIVY 155
>gi|17546241|ref|NP_519643.1| transcription elongation factor GreA [Ralstonia solanacearum
GMI1000]
gi|25452993|sp|Q8XZ82|GREA_RALSO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|17428538|emb|CAD15224.1| probable transcription elongation factor grea (transcript cleavage
factorgrea) protein [Ralstonia solanacearum GMI1000]
gi|299066489|emb|CBJ37679.1| transcription elongation factor [Ralstonia solanacearum CMR15]
Length = 158
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G + ++ EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EG
Sbjct: 1 MSTIPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ + A+VID + + D RI FGAT+ L + +SG YQIVGD EAD+ SG +
Sbjct: 61 RILEIESKLAAAQVIDPAGLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ +V APGGE+ YE+ V ++
Sbjct: 121 SISSPIARALIGKYEGDVATVVAPGGEREYEVRAVKYL 158
>gi|238783524|ref|ZP_04627546.1| Transcription elongation factor greA [Yersinia bercovieri ATCC
43970]
gi|238797561|ref|ZP_04641058.1| Transcription elongation factor greA [Yersinia mollaretii ATCC
43969]
gi|238715579|gb|EEQ07569.1| Transcription elongation factor greA [Yersinia bercovieri ATCC
43970]
gi|238718558|gb|EEQ10377.1| Transcription elongation factor greA [Yersinia mollaretii ATCC
43969]
Length = 158
Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G DK+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGADKLREELDFLKGVRRPKIISDIATAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M + R+ FGATV ++ + +++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVDIEEEQQYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D++ + PGGE YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILSVDYV 158
>gi|262371951|ref|ZP_06065230.1| transcription elongation factor GreB [Acinetobacter junii SH205]
gi|262311976|gb|EEY93061.1| transcription elongation factor GreB [Acinetobacter junii SH205]
Length = 158
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL+ + +RPRI +AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPEGKVALEKELQQLKTVDRPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + +VID+ + R+ FG TV++ ++ ++K Y+IVGD EAD + +
Sbjct: 61 RIQDIEGKLGACQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK GD + P GE YEI+ V ++
Sbjct: 121 SVNSPIARGLLGKSEGDEAKIQTPQGEVEYEIVSVEYL 158
>gi|239948368|ref|ZP_04700121.1| transcription elongation factor [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239922644|gb|EER22668.1| transcription elongation factor [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 206
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 80/157 (50%), Positives = 115/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 45 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 104
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 105 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 164
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 165 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 201
>gi|83747766|ref|ZP_00944800.1| Transcription elongation factor greA (transcription cleavage
factor) [Ralstonia solanacearum UW551]
gi|83725538|gb|EAP72682.1| Transcription elongation factor greA (transcription cleavage
factor) [Ralstonia solanacearum UW551]
Length = 158
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G + +++EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EG
Sbjct: 1 MSTIPITKRGAEMLKEELQRLKTKERPAVVTAIAEARAQGDLSENADYDAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ + A+VID +++ D RI FGAT+ L + +SG YQIVGD EAD+ +G +
Sbjct: 61 RILEIESKLAAAQVIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ +V APGGE+ YE+ V ++
Sbjct: 121 SISSPIARALIGKYEGDVATVVAPGGEREYEVRSVKYL 158
>gi|108563274|ref|YP_627590.1| transcription elongation factor GreA [Helicobacter pylori HPAG1]
gi|207092077|ref|ZP_03239864.1| transcription elongation factor GreA [Helicobacter pylori
HPKX_438_AG0C1]
gi|208434775|ref|YP_002266441.1| transcription elongation factor [Helicobacter pylori G27]
gi|210135059|ref|YP_002301498.1| transcription elongation factor GreA [Helicobacter pylori P12]
gi|123373738|sp|Q1CT06|GREA_HELPH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238058234|sp|B6JM90|GREA_HELP2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238058235|sp|B5Z7M6|GREA_HELPG RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|107837047|gb|ABF84916.1| transcription elongation factor [Helicobacter pylori HPAG1]
gi|208432704|gb|ACI27575.1| transcription elongation factor [Helicobacter pylori G27]
gi|210133027|gb|ACJ08018.1| transcription elongation factor [Helicobacter pylori P12]
gi|317009127|gb|ADU79707.1| transcription elongation factor GreA [Helicobacter pylori India7]
gi|317012671|gb|ADU83279.1| transcription elongation factor GreA [Helicobacter pylori
Lithuania75]
Length = 164
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 66/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|82701614|ref|YP_411180.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC
25196]
gi|82409679|gb|ABB73788.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC
25196]
Length = 158
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T G K++ EL + +RP +I AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MSTIPLTVTGAGKLRAELHEMKTVQRPAVIAAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A++ID +T+ D FGAT+ L + S YQIVGD EAD++ G +
Sbjct: 61 RIAELESKLSNAQIIDPATLDADGACVFGATIDLEDVESATTVTYQIVGDDEADIKEGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPI+RALIGK GD+ V APGG + YEIL V +I
Sbjct: 121 SISSPISRALIGKYPGDVAEVMAPGGVREYEILDVRYI 158
>gi|194098470|ref|YP_002001530.1| transcription elongation factor GreA [Neisseria gonorrhoeae
NCCP11945]
gi|291043955|ref|ZP_06569671.1| transcription elongation factor greA [Neisseria gonorrhoeae DGI2]
gi|293399156|ref|ZP_06643321.1| transcription elongation factor GreA [Neisseria gonorrhoeae F62]
gi|193933760|gb|ACF29584.1| GreA [Neisseria gonorrhoeae NCCP11945]
gi|291012418|gb|EFE04407.1| transcription elongation factor greA [Neisseria gonorrhoeae DGI2]
gi|291610570|gb|EFF39680.1| transcription elongation factor GreA [Neisseria gonorrhoeae F62]
gi|317164152|gb|ADV07693.1| transcription elongation factor GreA [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 174
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 17 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 76
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 77 RISELEHKLSVAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 136
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 137 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 174
>gi|297380066|gb|ADI34953.1| transcription elongation factor GreA [Helicobacter pylori v225d]
Length = 164
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 66/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E++ GL+S
Sbjct: 61 RIVDLSEIIANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESNPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|226951540|ref|ZP_03822004.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Acinetobacter sp. ATCC 27244]
gi|294651182|ref|ZP_06728514.1| transcription elongation factor GreA [Acinetobacter haemolyticus
ATCC 19194]
gi|226837732|gb|EEH70115.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Acinetobacter sp. ATCC 27244]
gi|292822935|gb|EFF81806.1| transcription elongation factor GreA [Acinetobacter haemolyticus
ATCC 19194]
Length = 158
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL+ + +RPRI +AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPEGKVALEKELQQLKTVDRPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + +VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +
Sbjct: 61 RIQDIEGKLGACQVIDVKDLEKNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK GD + P GE YEI+ V ++
Sbjct: 121 SVNSPIARGLLGKSEGDEAKIQTPQGEVEYEIVSVEYL 158
>gi|149913254|ref|ZP_01901788.1| transcription elongation factor GreA [Roseobacter sp. AzwK-3b]
gi|149813660|gb|EDM73486.1| transcription elongation factor GreA [Roseobacter sp. AzwK-3b]
Length = 156
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 86/157 (54%), Positives = 125/157 (79%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T +G ++ EL+ + EERP II+AISEAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPMTRRGHTALEVELKQLKSEERPAIIRAISEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+RAEVID + + G I FGATV+LV++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGVISRAEVIDPTKLKGP-IKFGATVTLVDEDTDEEKTWQIVGEYEANIENGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD + V PGGEK+YE+L++ +I
Sbjct: 120 MKSPIARALIGKEAGDSVEVRTPGGEKSYEVLKIEYI 156
>gi|94500165|ref|ZP_01306699.1| transcription elongation factor GreA [Oceanobacter sp. RED65]
gi|94427738|gb|EAT12714.1| transcription elongation factor GreA [Oceanobacter sp. RED65]
Length = 158
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 77/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T G +++EL ++ ERP++IKAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQKVPMTVDGEKALREELDQLKKVERPKVIKAIAEAREHGDLKENAEYHAAREQQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++T+ ++ FG TV L++ N+ ++K YQIVG+ EAD+ +G +
Sbjct: 61 RIQDIEGKLSNAQVIDVTTLPQTGKVIFGTTVRLIDANTDEEKQYQIVGEDEADIPNGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SPIARALIGKE GD++ V P GE YEI QVL++
Sbjct: 121 SAGSPIARALIGKEEGDVVVVKVPNGEIEYEIDQVLYL 158
>gi|238761759|ref|ZP_04622733.1| Transcription elongation factor greA [Yersinia kristensenii ATCC
33638]
gi|238699873|gb|EEP92616.1| Transcription elongation factor greA [Yersinia kristensenii ATCC
33638]
Length = 158
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVNGAEKLREELDFLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M + R+ FG+TV ++ S +++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGSTVRVLNVVSEEEQQYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D++ + PGGE YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILSVDYV 158
>gi|119383180|ref|YP_914236.1| transcription elongation factor GreA [Paracoccus denitrificans
PD1222]
gi|166200684|sp|A1AZ46|GREA_PARDP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|119372947|gb|ABL68540.1| transcription elongation factor GreA [Paracoccus denitrificans
PD1222]
Length = 156
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 84/157 (53%), Positives = 124/157 (78%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G+D++ +ELR + +RP +I+AI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKIPMTRAGYDQLDEELRELRSVQRPAVIRAIAEAREHGDLSENAEYHAAREKQSFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++RAEVID + ++G I FGATV+LV+++S +++ YQIVG+ EAD++ GL++
Sbjct: 61 RIKELEMILSRAEVIDPTRLNGS-IKFGATVTLVDEDSEEERTYQIVGEAEADLERGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARALIGK+ GD I V PGG K+YEI+ + ++
Sbjct: 120 IRSPLARALIGKDEGDSIEVVTPGGGKSYEIISIRYV 156
>gi|121998553|ref|YP_001003340.1| transcription elongation factor GreA [Halorhodospira halophila SL1]
gi|166200666|sp|A1WXX6|GREA_HALHL RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|121589958|gb|ABM62538.1| transcription elongation factor GreA [Halorhodospira halophila SL1]
Length = 158
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 79/157 (50%), Positives = 118/157 (75%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G +K+++EL + E+RPR+I+AI+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MSKIPLTIRGAEKLREELHRLKHEDRPRVIQAIAEAREHGDLKENAEYHAAREQQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A++ID + + +I FGATV+L + ++ + YQIVG+ EAD++ L+
Sbjct: 61 RIQEIEGKLSNAQIIDPAAVQAAPKIVFGATVALEDTDTEETVTYQIVGEDEADIKQHLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIARALIGKE GD V APGGE+TYEI++V +
Sbjct: 121 SVNSPIARALIGKEEGDEAVVQAPGGERTYEIVEVRY 157
>gi|88705675|ref|ZP_01103385.1| Transcription elongation factor greA [Congregibacter litoralis
KT71]
gi|88700188|gb|EAQ97297.1| Transcription elongation factor greA [Congregibacter litoralis
KT71]
Length = 158
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T++G +++EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MSKVPMTAQGEKALREELEQLKKVDRPRIVQAIAEAREHGDLKENAEYHAAREQQSFAEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ + ++ FG TV L+ S D Y+IVGD EAD + L+
Sbjct: 61 RIMDIEGKLSHAQVIDVTAIPPTGKVIFGVTVDLINVESDDTVTYRIVGDDEADAKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGKE GD++ V APGG++ YEI QV I
Sbjct: 121 SVNSPIARALIGKEEGDVVVVRAPGGDREYEIDQVRHI 158
>gi|84515779|ref|ZP_01003140.1| transcription elongation factor GreA [Loktanella vestfoldensis
SKA53]
gi|84510221|gb|EAQ06677.1| transcription elongation factor GreA [Loktanella vestfoldensis
SKA53]
Length = 156
Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats.
Identities = 86/156 (55%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GFDKI EL+ + ERP II+AISEAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPLTRAGFDKIDAELKHLKSVERPAIIRAISEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ A+VID S SG + FGATV LV++++ ++K Y IVG+ EAD++SG ++
Sbjct: 61 RVKELEGVISLADVIDPSKFSGP-VKFGATVLLVDEDTDEEKTYLIVGEYEADIESGKLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+ARALIGK+ GD I V+ PGG ++YEIL++ +
Sbjct: 120 MKSPLARALIGKDEGDSIEVSTPGGVRSYEILKITY 155
>gi|255020830|ref|ZP_05292886.1| Transcription elongation factor GreA [Acidithiobacillus caldus ATCC
51756]
gi|254969621|gb|EET27127.1| Transcription elongation factor GreA [Acidithiobacillus caldus ATCC
51756]
Length = 158
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 84/159 (52%), Positives = 115/159 (72%), Gaps = 2/159 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DKIP+T G ++++EL+ + ++RP +I+AI+EARA GDLSENAEY AAKE Q E
Sbjct: 1 MSDKIPMTVVGAQRLREELQRLKSQDRPAVIEAIAEARAKGDLSENAEYDAAKEQQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E+ + RA++ID +++ D RI FGATV L + + G YQIVGD EAD++
Sbjct: 61 GRIREIEDFLARAQIIDPRSLNTDGRIVFGATVELEDSD-GKAITYQIVGDAEADIKENK 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SISSP+ARALIGK GD + VNAPGG + Y IL V ++
Sbjct: 120 ISISSPLARALIGKHEGDSVEVNAPGGIREYSILGVRYL 158
>gi|149927094|ref|ZP_01915352.1| transcription elongation factor GreA [Limnobacter sp. MED105]
gi|149824315|gb|EDM83535.1| transcription elongation factor GreA [Limnobacter sp. MED105]
Length = 158
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 85/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T KG +K++QEL + +RP +I AISEARA GDLSENAEY AAKE Q EG
Sbjct: 1 MATIPLTVKGAEKLKQELHRLKTIDRPAVINAISEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A++ID + + R+ FGATV L + +G YQIVGD EAD+++GL+
Sbjct: 61 RIKEIEGKMSNAQIIDPTNVDAEGRVVFGATVKLEDIEAGATVEYQIVGDDEADIKAGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ V APGG + YE+L+V +I
Sbjct: 121 SISSPIARALIGKYEGDVAHVQAPGGLREYEVLEVKYI 158
>gi|157965027|ref|YP_001499851.1| transcription elongation factor GreA [Rickettsia massiliae MTU5]
gi|157844803|gb|ABV85304.1| Transcription elongation factor GreA [Rickettsia massiliae MTU5]
Length = 198
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 81/157 (51%), Positives = 115/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 37 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 96
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ +K Y IVG+ EAD+ V
Sbjct: 97 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEKVTYIIVGEYEADITRKRV 156
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 157 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 193
>gi|119944570|ref|YP_942250.1| transcription elongation factor GreA [Psychromonas ingrahamii 37]
gi|189042245|sp|A1ST36|GREA_PSYIN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|119863174|gb|ABM02651.1| transcription elongation factor GreA [Psychromonas ingrahamii 37]
Length = 159
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T+ G K++ EL+ + RPRI+KAI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MVQYPMTANGAAKLRSELKQLKTVTRPRIVKAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A +IDI+ ++ + ++ FGATV++V + + Y+IVGD EA+++ L+
Sbjct: 61 RIQDIEAKLSNARIIDITNITNNGKVIFGATVTIVNVETDAEVTYKIVGDDEANIKINLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSP+AR LIGK L D IS+ PGG YEI+ V +I
Sbjct: 121 SVSSPLARGLIGKTLDDEISIVTPGGTIDYEIISVQYI 158
>gi|224823861|ref|ZP_03696970.1| transcription elongation factor GreA [Lutiella nitroferrum 2002]
gi|224604316|gb|EEG10490.1| transcription elongation factor GreA [Lutiella nitroferrum 2002]
Length = 158
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G + +++EL+ + ERP +I+AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MNKVPLTLRGAELLKEELQRLKSVERPAVIEAIAEARSHGDLSENAEYDAAKERQAFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE ++ A++I+ S + RI FG TV L++ + D+ YQIVGD EAD++ V
Sbjct: 61 RIAELEGKLSNAQIINPSELDAEGRIVFGTTVELMDLETEDEVTYQIVGDDEADIKFAKV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGKE GD+ V APGG + YEIL V +I
Sbjct: 121 SVNSPIARALIGKEAGDVAEVMAPGGIREYEILDVKYI 158
>gi|255261573|ref|ZP_05340915.1| transcription elongation factor GreA [Thalassiobium sp. R2A62]
gi|255103908|gb|EET46582.1| transcription elongation factor GreA [Thalassiobium sp. R2A62]
Length = 156
Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T G+D + EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MDKIPLTKAGYDALNAELKHLKSVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ A+VID S MSG FGA V LV++++ ++K+YQIVG+ EAD+++G ++
Sbjct: 61 RVKELEGVISLADVIDTSKMSG-TAKFGAMVKLVDEDTDEEKSYQIVGEHEADIENGKLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+ARALIGK+ GD + V PGG K+YEIL++ +
Sbjct: 120 MKSPLARALIGKDEGDSVEVRTPGGGKSYEILEINY 155
>gi|259907033|ref|YP_002647389.1| Transcription elongation factor GreA [Erwinia pyrifoliae Ep1/96]
gi|224962655|emb|CAX54110.1| Transcription elongation factor GreA [Erwinia pyrifoliae Ep1/96]
gi|283476829|emb|CAY72667.1| Transcription elongation factor greA [Erwinia pyrifoliae DSM 12163]
gi|310766245|gb|ADP11195.1| Transcription elongation factor GreA [Erwinia sp. Ejp617]
Length = 160
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 69/160 (43%), Positives = 115/160 (71%), Gaps = 3/160 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G DK+++EL + +RPRII +I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTLRGADKLREELEELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
R+ E+E ++ A+VID++ M+G+ R+ FGATV+++ + ++ Y+IVGD EAD +
Sbjct: 61 RIQEIEAKLSNAQVIDVTKMAGNANGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQN 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
L+S++SP+AR L+GK D+ + PGG+ Y+I++V ++
Sbjct: 121 LISVNSPMARGLVGKVADDVTVIKTPGGDVEYDIIKVEYL 160
>gi|326409521|gb|ADZ66586.1| transcription elongation factor GreA [Brucella melitensis M28]
Length = 152
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 99/152 (65%), Positives = 133/152 (87%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEGR+ EL
Sbjct: 1 MTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEGRINEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +SISSPI
Sbjct: 61 EDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRISISSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARALIGK GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 152
>gi|114562155|ref|YP_749668.1| transcription elongation factor GreA [Shewanella frigidimarina
NCIMB 400]
gi|114333448|gb|ABI70830.1| transcription elongation factor GreA [Shewanella frigidimarina
NCIMB 400]
Length = 158
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T G D++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E
Sbjct: 1 MSKVPMTVVGADQLRKELELLKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICEA 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++ + + R+ FG TV+++ ++ + Y+IVGD EAD++ L+
Sbjct: 61 RIRDIEGKLSNAQIIDVTKLENTGRVIFGTTVTILNIDTDAEVTYRIVGDDEADIKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +S+ PGG YEI++V ++
Sbjct: 121 SVNSPIARGLIGKSEGDEVSITTPGGLTDYEIVKVQYL 158
>gi|146313249|ref|YP_001178323.1| transcription elongation factor GreA [Enterobacter sp. 638]
gi|145320125|gb|ABP62272.1| transcription elongation factor GreA [Enterobacter sp. 638]
Length = 158
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIISAIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VIDI+ + R+ FGA+V ++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDITKIPNTGRVIFGASVKVLNLDNDEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE D++ + PGGE +EI++V ++
Sbjct: 121 SVNSPIARGLIGKEEEDVVVIRTPGGEVEFEIIKVEYL 158
>gi|146278508|ref|YP_001168667.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC
17025]
gi|166200695|sp|A4WVE8|GREA_RHOS5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|145556749|gb|ABP71362.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC
17025]
Length = 156
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 81/157 (51%), Positives = 120/157 (76%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GF + EL+ + ERP +I+AI+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKIPMTRAGFAALDDELKLLKTVERPAVIRAIAEAREHGDLSENAEYHAAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +++ AEVID + +SG I FGATV+++++ + ++K YQIVG+ EAD+++GL++
Sbjct: 61 RIKELEALLSLAEVIDPARLSGS-IKFGATVTILDEETEEEKTYQIVGEAEADIENGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARALIGK+ GD I V PGGE+ YE++ V ++
Sbjct: 120 IKSPLARALIGKDEGDSIEVKTPGGERGYEVVSVRFV 156
>gi|264679349|ref|YP_003279256.1| Kelongation factor GreA [Comamonas testosteroni CNB-2]
gi|299532308|ref|ZP_07045701.1| Kelongation factor GreA [Comamonas testosteroni S44]
gi|262209862|gb|ACY33960.1| Kelongation factor GreA [Comamonas testosteroni CNB-2]
gi|298719716|gb|EFI60680.1| Kelongation factor GreA [Comamonas testosteroni S44]
Length = 158
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K++ EL+ + +RP +I+AI+EARA GDLSENAEY++AKE Q EG
Sbjct: 1 MATIPITKRGAEKLKVELQRLKTVDRPAVIQAIAEARAQGDLSENAEYESAKEQQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID + + G R+ FGATV L +++SG YQIVG+ EAD++ GL+
Sbjct: 61 RILEVEGKLSAAQVIDPTELDAGGRVVFGATVDLEDEDSGSPVTYQIVGEDEADLKHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++SSPIARALIGKE GD V APGGE+ YEI+ V ++
Sbjct: 121 NVSSPIARALIGKEEGDTAVVQAPGGERRYEIVGVKYV 158
>gi|261856155|ref|YP_003263438.1| transcription elongation factor GreA [Halothiobacillus neapolitanus
c2]
gi|261836624|gb|ACX96391.1| transcription elongation factor GreA [Halothiobacillus neapolitanus
c2]
Length = 158
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 76/156 (48%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T+ G K++ EL+ + ERPRII+AI+EAR GDL ENAEY AA+E Q EGR+
Sbjct: 2 QTPMTAAGAAKLEAELKQLRGVERPRIIQAIAEARDLGDLKENAEYHAAREEQGFVEGRI 61
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A +ID+S + D++ FGATV +++ +S ++ Y+IVGD EAD++S ++S+
Sbjct: 62 KEIEAKLSHANIIDVSRLPPSDKVIFGATVRVLDVDSDEEITYKIVGDDEADIKSNMISV 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARAL+GK LGD ++V+APGG++ +EI +V +I
Sbjct: 122 HSPIARALVGKSLGDEVTVDAPGGKRVFEITEVQYI 157
>gi|332283361|ref|YP_004415272.1| hypothetical protein PT7_0108 [Pusillimonas sp. T7-7]
gi|330427314|gb|AEC18648.1| hypothetical protein PT7_0108 [Pusillimonas sp. T7-7]
Length = 158
Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T++G +++Q EL + ERP +I AI+EARA GDLSENAEY AA+E Q EG
Sbjct: 1 MSAIPLTARGAERLQAELHRLKTIERPEVINAIAEARAQGDLSENAEYDAARERQAFVEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE ++ A++ID ST+ + FGATV + + SG++ YQIVGD EAD++S L+
Sbjct: 61 RIQELEGTLSNAQIIDPSTLDVEGKAVFGATVEIEDLESGERVKYQIVGDVEADIRSNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSP+ARALIG+ GD++ V AP G + YE+L V ++
Sbjct: 121 SVSSPVARALIGRGQGDVVEVKAPAGIREYEVLNVSYL 158
>gi|332978289|gb|EGK15017.1| transcription elongation factor GreA [Psychrobacter sp. 1501(2011)]
Length = 158
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G ++ EL+ + +RPRI +I+EAR +GDL ENAEY AA+E Q E
Sbjct: 1 MQRYPMTPQGHAALEAELKQLKTVDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEA 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID +T+ R+ FG TV + ++ ++K YQIVGD EAD ++ +
Sbjct: 61 RIRDIEAKLSGAQVIDPTTLPREGRVVFGVTVVIENLDTEEQKRYQIVGDDEADFKNNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIAR LIGK GD + P G +EI++V++
Sbjct: 121 SVNSPIARGLIGKSEGDEARIETPSGVVEFEIIEVIY 157
>gi|229587229|ref|YP_002845730.1| transcription elongation factor GreA [Rickettsia africae ESF-5]
gi|228022279|gb|ACP53987.1| Transcription elongation factor GreA [Rickettsia africae ESF-5]
Length = 185
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 79/157 (50%), Positives = 114/157 (72%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 24 MNTKFPITAKGFEKLEHELKHLKHVERKKISADIAEAREHGDLSENAEYEAAREKQAFIE 83
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 84 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 143
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ + +
Sbjct: 144 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTIEY 180
>gi|308183020|ref|YP_003927147.1| transcription elongation factor GreA [Helicobacter pylori PeCan4]
gi|308065205|gb|ADO07097.1| transcription elongation factor GreA [Helicobacter pylori PeCan4]
Length = 164
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 65/156 (41%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E++ GL+S
Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESNPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156
>gi|285018124|ref|YP_003375835.1| transcription elongation factor grea (transcript cleavage factor
grea) protein [Xanthomonas albilineans GPE PC73]
gi|283473342|emb|CBA15847.1| probable transcription elongation factor grea (transcript cleavage
factor grea) protein [Xanthomonas albilineans]
Length = 158
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 76/154 (49%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q EGR+ +
Sbjct: 4 PITLQGAQRLREELDHLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQGFIEGRIKQ 63
Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE+ ++ AEVIDIS ++ G ++ FGATV+L + + ++K YQ+VGD EAD++ GL++ISS
Sbjct: 64 LESELSHAEVIDISKLAVGSKVVFGATVTLADVETDEEKRYQLVGDLEADIKLGLIAISS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARALIGK GD + ++AP G + YEI+ V ++
Sbjct: 124 PLARALIGKMEGDSVGIDAPAGHREYEIVSVQYL 157
>gi|126740555|ref|ZP_01756242.1| transcription elongation factor GreA [Roseobacter sp. SK209-2-6]
gi|126718356|gb|EBA15071.1| transcription elongation factor GreA [Roseobacter sp. SK209-2-6]
Length = 156
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 80/156 (51%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ EL+ + ERP II+AI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MEKIPMTPAGHTAMESELKNLKSVERPSIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE II A+VID + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGIIGLADVIDPAKLSGS-IKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGK+ GD + V PGGE++YEIL++++
Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGERSYEILKIVY 155
>gi|148652641|ref|YP_001279734.1| transcription elongation factor GreA [Psychrobacter sp. PRwf-1]
gi|189042246|sp|A5WDP3|GREA_PSYWF RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|148571725|gb|ABQ93784.1| transcription elongation factor GreA [Psychrobacter sp. PRwf-1]
Length = 158
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G ++ EL+ + +RPRI AI+EAR +GDL ENAEY AA+E Q E
Sbjct: 1 MQRYPMTPQGHAALEAELKQLKSVDRPRITAAIAEAREHGDLKENAEYHAAREQQGFCEA 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID +T+ R+ FG TV + ++ ++K YQIVGD EAD ++ +
Sbjct: 61 RIRDIEAKLSGAQVIDPATLPREGRVVFGVTVVIENLDTEEQKRYQIVGDDEADFKNNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIAR LIGK GD + P G +EI++V++
Sbjct: 121 SVNSPIARGLIGKSEGDEARIETPSGLVEFEIIEVIY 157
>gi|158522232|ref|YP_001530102.1| transcription elongation factor GreA [Desulfococcus oleovorans
Hxd3]
gi|158511058|gb|ABW68025.1| transcription elongation factor GreA [Desulfococcus oleovorans
Hxd3]
Length = 164
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 71/155 (45%), Positives = 113/155 (72%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+ IP+T +G++K+ QEL + ERP I+AI EARA+GDLSENAE+ AAKE Q EG
Sbjct: 10 VETIPITRQGYEKLNQELSRLKAVERPANIRAIEEARAHGDLSENAEFHAAKEKQGFIEG 69
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LE+ + A +ID ST++ DR FG T+ L ++GD+ YQ+VG E+++ +GL+S
Sbjct: 70 RINDLEHKLASANIIDPSTLTKDRAVFGCTIRLESIDTGDEVEYQLVGPDESNIDNGLIS 129
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
++SP+ +A++GK GD + + APGG+++YE++++
Sbjct: 130 VTSPLGKAILGKVPGDEVVLQAPGGKRSYELIEIR 164
>gi|322380197|ref|ZP_08054428.1| transcription elongation factor GreA [Helicobacter suis HS5]
gi|321147363|gb|EFX42032.1| transcription elongation factor GreA [Helicobacter suis HS5]
Length = 161
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 104/154 (67%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E R+
Sbjct: 2 KEPMSAYGYEKICAELKRLKEIERPEIVKEIDRAREHGDLKENAEYHAAKEKQAFIEARI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+L I+ A+VID ST+S +++FG+TV +++ N+ + +Y IVG E+D GL+S
Sbjct: 62 NDLSRILANAQVIDPSTLSHQKVSFGSTVRILDLNNDKEFSYTIVGSMESDPSRGLISFG 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A++L+GK GD ++V P GE +EIL + +
Sbjct: 122 SPVAKSLMGKSKGDEVTVLLPSGESEFEILDICY 155
>gi|329910107|ref|ZP_08275233.1| Transcription elongation factor GreA [Oxalobacteraceae bacterium
IMCC9480]
gi|327546260|gb|EGF31291.1| Transcription elongation factor GreA [Oxalobacteraceae bacterium
IMCC9480]
Length = 158
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +P+T G +++EL + +ERP II AISEARA GDLSENAEY AAKE Q+ EG
Sbjct: 1 MSTVPITKFGAQLLKEELHRLKTKERPSIINAISEARAQGDLSENAEYDAAKERQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+++LE + +++ID T+ D RI FG+TV L + +GDK YQIVG EAD++ V
Sbjct: 61 RISDLEGKLGSSQIIDPLTLEADGRIVFGSTVYLEDLETGDKVTYQIVGTDEADLKQLKV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGK GD++ V AP G + YE+L+V +I
Sbjct: 121 SVTSPIARALIGKVAGDVVGVQAPAGVREYEVLEVRYI 158
>gi|262376633|ref|ZP_06069861.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145]
gi|262308343|gb|EEY89478.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145]
Length = 158
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL + +RPRI +I+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPEGKIALEKELHQLKTVDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A+VID+ + + R+ FG TV++ ++ ++K Y+IVGD EAD + +
Sbjct: 61 RIQDIEGKLGAAQVIDVKELEHNGRVVFGVTVTIENLDTEEQKTYKIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK GD + +N P GE YEI++V ++
Sbjct: 121 SVNSPIARGLLGKNEGDDVKINTPNGEVEYEIVKVEYL 158
>gi|284006659|emb|CBA71921.1| transcription elongation factor [Arsenophonus nasoniae]
Length = 179
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 22 MKQIPMTVRGAEKLRKELEFLKNIRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 81
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ M R+ FGATV++ + + + Y+IVGD EAD++ L+
Sbjct: 82 RIQEIEAKLSHAQVIDVTKMKNEGRVIFGATVTVFNVTTNEDQIYRIVGDDEADIKENLI 141
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK + D+ + PGGE YEIL+V +I
Sbjct: 142 SVNSPIARGLIGKTMDDVAVITTPGGEVEYEILKVEYI 179
>gi|309785509|ref|ZP_07680140.1| transcription elongation factor GreA domain protein [Shigella
dysenteriae 1617]
gi|25321427|pir||D91136 transcription elongation factor GreA ECs4060 [imported] -
Escherichia coli (strain O157:H7, substrain RIMD
0509952)
gi|25321434|pir||G85981 transcription elongation factor greA [similarity] - Escherichia
coli (strain O157:H7, substrain EDL933)
gi|12517796|gb|AAG58315.1|AE005547_1 transcription elongation factor: cleaves 3' nucleotide of paused
mRNA [Escherichia coli O157:H7 str. EDL933]
gi|606119|gb|AAA57982.1| greA [Escherichia coli str. K-12 substr. MG1655]
gi|13363533|dbj|BAB37483.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
Sakai]
gi|73857195|gb|AAZ89902.1| transcription elongation factor [Shigella sonnei Ss046]
gi|81242643|gb|ABB63353.1| transcription elongation factor [Shigella dysenteriae Sd197]
gi|81246992|gb|ABB67700.1| transcription elongation factor [Shigella boydii Sb227]
gi|209758228|gb|ACI77426.1| transcription elongation factor GreA [Escherichia coli]
gi|209758230|gb|ACI77427.1| transcription elongation factor GreA [Escherichia coli]
gi|209758232|gb|ACI77428.1| transcription elongation factor GreA [Escherichia coli]
gi|209758234|gb|ACI77429.1| transcription elongation factor GreA [Escherichia coli]
gi|209758236|gb|ACI77430.1| transcription elongation factor GreA [Escherichia coli]
gi|308926629|gb|EFP72105.1| transcription elongation factor GreA domain protein [Shigella
dysenteriae 1617]
gi|323154395|gb|EFZ40596.1| transcription elongation factor GreA domain protein [Escherichia
coli EPECa14]
gi|323173559|gb|EFZ59188.1| transcription elongation factor GreA domain protein [Escherichia
coli LT-68]
gi|327251272|gb|EGE62961.1| transcription elongation factor GreA domain protein [Escherichia
coli STEC_7v]
Length = 153
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 69/153 (45%), Positives = 111/153 (72%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ ++
Sbjct: 1 MTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDI 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+S++SP
Sbjct: 61 EAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGKE D++ + PGGE +E+++V ++
Sbjct: 121 IARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 153
>gi|73541862|ref|YP_296382.1| transcription elongation factor GreA [Ralstonia eutropha JMP134]
gi|72119275|gb|AAZ61538.1| transcription elongation factor GreA [Ralstonia eutropha JMP134]
Length = 158
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G + +++EL + ERP +I AI+EARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPITKRGAELLKEELHRLKAVERPAVINAIAEARAQGDLSENAEYDAAKEKQAFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A+VID + + D RI FGATV L + SG +YQIVGD EAD+ SG +
Sbjct: 61 RILEVESKLSAAQVIDPTQLDTDGRIVFGATVDLEDLESGSPVSYQIVGDDEADLDSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V APGGE+ YE++ V ++
Sbjct: 121 SVSSPIARALIGKFEGDVATVLAPGGEREYEVITVRYV 158
>gi|163738891|ref|ZP_02146304.1| transcription elongation factor GreA [Phaeobacter gallaeciensis
BS107]
gi|163741863|ref|ZP_02149253.1| transcription elongation factor GreA [Phaeobacter gallaeciensis
2.10]
gi|161385036|gb|EDQ09415.1| transcription elongation factor GreA [Phaeobacter gallaeciensis
2.10]
gi|161387696|gb|EDQ12052.1| transcription elongation factor GreA [Phaeobacter gallaeciensis
BS107]
Length = 156
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 79/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ EL+ + ERP IIKAI+EAR GDLSENAEY +A+E Q+ EG
Sbjct: 1 MEKIPMTPTGHAALETELKTLKSVERPAIIKAIAEARELGDLSENAEYHSAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ A+VI+ + +SG I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61 RIKELEGILSLADVINPAKLSG-AIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGKE GD + V PGG++ YEIL++++
Sbjct: 120 IRSPIARALIGKEEGDSVEVRTPGGDRAYEILKIIY 155
>gi|224437954|ref|ZP_03658896.1| transcription elongation factor GreA [Helicobacter cinaedi CCUG
18818]
Length = 158
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 61/151 (40%), Positives = 107/151 (70%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G++K+ EL+ ++ ERP+I+ I AR++GDL ENAEY AA+E Q E R+ EL
Sbjct: 1 MTNYGYEKLCAELKNLKEVERPKIVVEIDVARSHGDLKENAEYHAAREKQAFIEARINEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++++A+VID +++ ++++FG++V ++ ++ + Y +VG E++ GL+S+SSPI
Sbjct: 61 GLMLSQAQVIDPASLKHNKVSFGSSVKILNLDTDKEFVYTLVGSMESNPSKGLISVSSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+AL+GK+ GD +S+ P GE +EIL+V +
Sbjct: 121 AKALMGKKQGDEVSIMLPSGENEFEILEVFY 151
>gi|187477431|ref|YP_785455.1| transcription elongation factor [Bordetella avium 197N]
gi|115422017|emb|CAJ48539.1| transcription elongation factor [Bordetella avium 197N]
Length = 158
Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +++ QEL + ERP +I AI+EARA GDLSENAEY AA+E Q EG
Sbjct: 1 MSAIPLTVRGAERLNQELHRLKTIERPAVINAIAEARAQGDLSENAEYDAARERQAFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE ++ A +ID S + R FGATV + + SGD+ YQIVGD EAD++S L+
Sbjct: 61 RIAELEGTLSNAHLIDPSALDAEGRAVFGATVEIEDLGSGDRLTYQIVGDVEADIKSNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSP+ARALIGK GD++ V AP G + YE++ V ++
Sbjct: 121 SVSSPVARALIGKSEGDVVEVKAPAGLREYEVIGVRYL 158
>gi|121604678|ref|YP_982007.1| transcription elongation factor GreA [Polaromonas naphthalenivorans
CJ2]
gi|229485903|sp|A1VN58|GREA_POLNA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|120593647|gb|ABM37086.1| transcription elongation factor GreA [Polaromonas naphthalenivorans
CJ2]
Length = 158
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +P+T +G +K++ EL + +RP +I AISEARA GDLSENAEY+ AK+ Q EG
Sbjct: 1 MATLPITKRGAEKLKAELHNLKTVQRPWVINAISEARAQGDLSENAEYEVAKDRQGFIEG 60
Query: 62 RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID +T +G R+ FG+TV L ++ +GD YQIVG+ EAD++ GLV
Sbjct: 61 RIQEIEGKLSAAQVIDPTTFETGTRVVFGSTVKLEDEATGDSVTYQIVGEDEADIKLGLV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+I SPIARALIGK+ GD V APGG + YEI+ VL+I
Sbjct: 121 NIGSPIARALIGKDEGDSAEVQAPGGIRRYEIVTVLYI 158
>gi|117926297|ref|YP_866914.1| transcription elongation factor GreA [Magnetococcus sp. MC-1]
gi|166200673|sp|A0LC15|GREA_MAGSM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|117610053|gb|ABK45508.1| transcription elongation factor GreA [Magnetococcus sp. MC-1]
Length = 157
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 80/157 (50%), Positives = 120/157 (76%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K+P+T +G ++++EL+ R+ +R RII AI EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1 MNPKVPMTLEGAQQLKEELKRRKTTDRKRIIAAIEEARAHGDLSENAEYHAAKEQQSFNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+A+LE ++ AEVID S ++ RI FGA V+++++++ ++ Y IVGD+EAD++ G +
Sbjct: 61 GRIAKLEGMLASAEVIDTSRLNSSRIVFGAKVTVIDEDTEEESTYHIVGDEEADLEKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSP+AR +IGKE GD I V APGG + +E++++ +
Sbjct: 121 SISSPMARGMIGKEAGDSIEVRAPGGTRHFEVVEITF 157
>gi|89900792|ref|YP_523263.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118]
gi|89345529|gb|ABD69732.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118]
Length = 180
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 77/154 (50%), Positives = 106/154 (68%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G +K++ EL + +RP +I AI+EARA GDLSENAEY+ AK+ Q EGR+ E
Sbjct: 27 PITKRGAEKLKAELHKLKTVDRPWVINAIAEARAQGDLSENAEYEVAKDKQGFIEGRIQE 86
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E ++ +VID + R+ FGATV L ++ SG YQIVG+ EAD++ GL++I S
Sbjct: 87 IEGKLSVCQVIDPVELHAEGRVVFGATVQLEDEASGAAVTYQIVGEDEADIKLGLINIGS 146
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
PIARALIGKE GD V APGG K YE++ V ++
Sbjct: 147 PIARALIGKEQGDTAEVQAPGGIKHYEVVAVSYV 180
>gi|217033071|ref|ZP_03438538.1| hypothetical protein HPB128_148g11 [Helicobacter pylori B128]
gi|298736570|ref|YP_003729096.1| transcription elongation factor GreA [Helicobacter pylori B8]
gi|216945215|gb|EEC23900.1| hypothetical protein HPB128_148g11 [Helicobacter pylori B128]
gi|298355760|emb|CBI66632.1| transcription elongation factor GreA [Helicobacter pylori B8]
Length = 164
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 65/156 (41%), Positives = 103/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L I+ A+VID S ++ ++++FG+T+ ++ ++ + +Y IVG E+ GL+S
Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESAPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD +S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDTVSIQLPNGESDFEILDIYY 156
>gi|332160070|ref|YP_004296647.1| transcription elongation factor GreA [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|325664300|gb|ADZ40944.1| transcription elongation factor GreA [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862039|emb|CBX72205.1| transcription elongation factor greA [Yersinia enterocolitica
W22703]
Length = 158
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVNGAEKLREELDYLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M + R+ FGATV ++ S +++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVVSEEEQQYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D++ + PGGE YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILNVDYV 158
>gi|258545601|ref|ZP_05705835.1| transcription elongation factor GreA [Cardiobacterium hominis ATCC
15826]
gi|258519153|gb|EEV88012.1| transcription elongation factor GreA [Cardiobacterium hominis ATCC
15826]
Length = 160
Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats.
Identities = 81/158 (51%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV KIP+T KG ++ EL + EERPR+I+AI+EARA+GDL ENAEY AA+E Q E
Sbjct: 1 MVAKIPMTKKGEQALRAELEKLKSEERPRVIEAIAEARAHGDLKENAEYHAAREQQGFVE 60
Query: 61 GRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ ELE+ ++ A VID++T+ ++ FG TV L + +SG++ Y+IVG+ EAD+++GL
Sbjct: 61 GRIRELEHKLSHANVIDVTTLPQNGKVVFGTTVELEDSDSGEEMTYKIVGEDEADIKAGL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S +SPIARAL+GKE G+ + V P G K EIL V +
Sbjct: 121 ISNTSPIARALLGKEEGETVEVVIPDGRKMLEILAVRY 158
>gi|315453431|ref|YP_004073701.1| transcription elongation factor [Helicobacter felis ATCC 49179]
gi|315132483|emb|CBY83111.1| transcription elongation factor [Helicobacter felis ATCC 49179]
Length = 163
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 65/154 (42%), Positives = 101/154 (65%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P++ G++KI EL+ ++ ERP +I+ I AR +GDL ENAEY AAK+ Q + R+
Sbjct: 2 QEPMSKYGYEKICAELKRLKEVERPCVIQEIDRAREHGDLKENAEYHAAKDKQAFIDARI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL + A+VID ST+S +++FG+TV ++ ++ + Y IVG E+D GL+S
Sbjct: 62 AELSQTLANAQVIDPSTLSHQKVSFGSTVKILNLDNDKEFCYTIVGRMESDPSRGLISFG 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++L+GK+ GD + V P GE +EIL + +
Sbjct: 122 SPIAKSLMGKQKGDEVIVVLPSGENEFEILDIFY 155
>gi|145298034|ref|YP_001140875.1| transcription elongation factor [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142850806|gb|ABO89127.1| transcription elongation factor [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 158
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 119/158 (75%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ P+T +G +K+++EL + + E RP+II+AI++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNHTPMTVRGAEKLREELDYLKSELRPQIIEAIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A+VID++ ++ + R+ FGATV+L++ + ++ Y+IVGD E+D++ ++
Sbjct: 61 RIQEIESKLSNAQVIDVTKIANNGRVIFGATVTLLKSETEEEVVYRIVGDDESDIKQNMI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGKE+ D++ V P G+ YEIL V ++
Sbjct: 121 SVNSPIARALIGKEVDDVVIVKTPAGDVEYEILAVAYL 158
>gi|163745673|ref|ZP_02153033.1| transcription elongation factor GreA [Oceanibulbus indolifex
HEL-45]
gi|161382491|gb|EDQ06900.1| transcription elongation factor GreA [Oceanibulbus indolifex
HEL-45]
Length = 156
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 121/156 (77%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T G ++ EL+ + ERP IIKAI+EAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPMTRDGHTALEVELKHLKSVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ A+VID +SG I FGATV+LV++++ ++K YQIVG+ EA+++ GL++
Sbjct: 61 RIKELEGVISLADVIDPKKLSGS-IKFGATVTLVDEDTEEEKTYQIVGEYEANIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGK+ GD + V PGG+K+YE+L++++
Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGQKSYEVLKIVY 155
>gi|222056354|ref|YP_002538716.1| transcription elongation factor GreA [Geobacter sp. FRC-32]
gi|221565643|gb|ACM21615.1| transcription elongation factor GreA [Geobacter sp. FRC-32]
Length = 158
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 112/157 (71%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +P+T + ++ +Q+EL+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E
Sbjct: 1 MSQSVPLTKESYEFLQEELKRLIKEERPKVIQDIAEARSHGDLSENAEYDAAKHRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL++ + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ G +
Sbjct: 61 GRILELQDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEEVTYKIVGEDEADIKIGKM 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+ +ALIG +L D + V+ P G K YEI+ + +
Sbjct: 121 SCTSPVGKALIGHKLDDTVKVSVPSGMKEYEIIDIKY 157
>gi|109947754|ref|YP_664982.1| transcription elongation factor GreA [Helicobacter acinonychis str.
Sheeba]
gi|123362580|sp|Q17WJ3|GREA_HELAH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|109714975|emb|CAJ99983.1| greA [Helicobacter acinonychis str. Sheeba]
Length = 164
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 65/156 (41%), Positives = 103/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++ P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNREPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L II+ A+VID + ++++FG+T+ ++ ++ + +Y IVG E+D GL+S
Sbjct: 61 RIVDLSEIISNAQVIDPGALMHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++LIGK GD+ S+ P GE +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDVASIQLPNGESDFEILDIYY 156
>gi|254448859|ref|ZP_05062315.1| GreA/GreB family elongation factor [gamma proteobacterium HTCC5015]
gi|198261549|gb|EDY85838.1| GreA/GreB family elongation factor [gamma proteobacterium HTCC5015]
Length = 159
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DK+P+T +G + +++EL + +ERP II+AI+EAR +GDL ENAEY AA+E Q E
Sbjct: 1 MTDKVPMTVEGAEAMREELTQLKSKERPEIIQAIAEAREHGDLKENAEYHAARERQGFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E ++ A++ID+ ++ ++ FG TV L + ++ ++K Y+IVG+ EA++Q G
Sbjct: 61 GRIKEIEGKLSYAQIIDVQSLPKSGKVVFGVTVELCDIDTEEEKTYKIVGEDEANIQQGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S +SP+AR+LIG+E GD + V PGG+ YEIL V +
Sbjct: 121 ISFTSPVARSLIGREEGDCVLVKTPGGDHEYEILAVRY 158
>gi|221066104|ref|ZP_03542209.1| transcription elongation factor GreA [Comamonas testosteroni KF-1]
gi|220711127|gb|EED66495.1| transcription elongation factor GreA [Comamonas testosteroni KF-1]
Length = 158
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K++ EL+ + +RP +I+AI+EARA GDLSENAEY++AKE Q EG
Sbjct: 1 MATIPITKRGAEKLKVELQRLKTVDRPAVIQAIAEARAQGDLSENAEYESAKEQQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID + + G R+ FGATV L +++SG YQIVG+ EAD++ GL+
Sbjct: 61 RIIEVEGKLSAAQVIDPTELDAGGRVVFGATVDLEDEDSGSAVTYQIVGEDEADLKHGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++SSPIARALIGKE GD V APGGE+ YEI+ V +I
Sbjct: 121 NVSSPIARALIGKEEGDTAVVQAPGGERRYEIVGVKYI 158
>gi|145589200|ref|YP_001155797.1| transcription elongation factor GreA [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047606|gb|ABP34233.1| transcription elongation factor GreA [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 158
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G + +++EL + ERP +I AISEARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPITKRGAELLKEELHRLKHIERPAVIIAISEARAQGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE+ ++ A+VID +++ + FGATV L + G K YQIVGD EAD+ +
Sbjct: 61 RIQELESKLSAAQVIDPASLDVTGLVVFGATVDLEDLEDGTKLTYQIVGDDEADIALNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALI KE GD+++V+AP G + EIL V +I
Sbjct: 121 SISSPIARALISKEEGDVVAVHAPAGNREVEILAVRYI 158
>gi|94311130|ref|YP_584340.1| transcription elongation factor GreA [Cupriavidus metallidurans
CH34]
gi|93354982|gb|ABF09071.1| transcription elongation factor [Cupriavidus metallidurans CH34]
Length = 173
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 86/158 (54%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G + +++EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EG
Sbjct: 16 MSTIPITKRGAELLKEELQRLKAVERPAVINAISEARAQGDLSENAEYDAAKEKQAFIEG 75
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID + + D RI FGATV L E SG+ +YQIVGD EAD+ +G +
Sbjct: 76 RILEVEAKLSAAQVIDPTQLDTDGRIVFGATVDLEELESGNPVSYQIVGDDEADLDTGKI 135
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ V APGGE+ YE++ V +I
Sbjct: 136 SVSSPIARALIGKFEGDVAVVLAPGGEREYEVITVRYI 173
>gi|71891884|ref|YP_277614.1| transcription elongation factor GreA [Candidatus Blochmannia
pennsylvanicus str. BPEN]
gi|123747831|sp|Q493U4|GREA_BLOPB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71795990|gb|AAZ40741.1| transcription elongation factor [Candidatus Blochmannia
pennsylvanicus str. BPEN]
Length = 158
Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +K+++EL + + RP IIK ISEAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKRIPMTLRGAEKLREELDYLRNVLRPEIIKNISEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ + A +IDI+ ++ D + FGATV + ++ ++ Y IVGD EA+++ ++
Sbjct: 61 RIQEIESKLFNAHIIDITKLTTDDKVVFGATVGVENLDTTYRQTYSIVGDDEANLKEHMI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI+SPIAR LIG + GDI+ +N P G+ Y+ILQV +
Sbjct: 121 SINSPIARGLIGHKEGDIVRINTPKGKVRYKILQVKYC 158
>gi|77462321|ref|YP_351825.1| transcription elongation factor GreA [Rhodobacter sphaeroides
2.4.1]
gi|126461197|ref|YP_001042311.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC
17029]
gi|221638177|ref|YP_002524439.1| transcription elongation factor GreA [Rhodobacter sphaeroides
KD131]
gi|332560203|ref|ZP_08414525.1| transcription elongation factor GreA [Rhodobacter sphaeroides WS8N]
gi|123592895|sp|Q3J5L0|GREA_RHOS4 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166200690|sp|A3PGS3|GREA_RHOS1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799566|sp|B9KLF5|GREA_RHOSK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|77386739|gb|ABA77924.1| transcription elongation factor GreA [Rhodobacter sphaeroides
2.4.1]
gi|126102861|gb|ABN75539.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC
17029]
gi|221158958|gb|ACL99937.1| Transcription elongation factor greA [Rhodobacter sphaeroides
KD131]
gi|332277915|gb|EGJ23230.1| transcription elongation factor GreA [Rhodobacter sphaeroides WS8N]
Length = 156
Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats.
Identities = 81/157 (51%), Positives = 120/157 (76%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T GF + EL+ + ERP +I++I+EAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MDKIPMTRAGFTALDDELKTLKTVERPAVIRSIAEAREHGDLSENAEYHAAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I++ AEVID + +SG I FGATV+++++ + +++ YQIVG+ EAD+++GL++
Sbjct: 61 RIKELEAILSLAEVIDPAKLSGS-IKFGATVTILDEETEEERTYQIVGEAEADIEAGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARALIGK+ GD I V PGGE+ YE++ V ++
Sbjct: 120 IKSPLARALIGKDEGDSIEVKTPGGERGYEVVSVRFV 156
>gi|49080972|gb|AAT50079.1| PA4755 [synthetic construct]
Length = 159
Score = 174 bits (442), Expect = 4e-42, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++E++ + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MSKFPMTVQGARALEEEVKHLKGVLRPQISQAIAEARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ + ++ FG TV + + + YQIVGD EAD++ G +
Sbjct: 61 RIRDIEAKLSNAQVIDVTAIPHSGKVIFGTTVDIANVETDETVTYQIVGDDEADIKGGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGK GD + V PGG+ YEI++V I
Sbjct: 121 SVNSPIARALIGKTEGDAVLVRTPGGDVEYEIVEVRHI 158
>gi|67459752|ref|YP_247376.1| transcription elongation factor GreA [Rickettsia felis URRWXCal2]
gi|67005285|gb|AAY62211.1| Transcription elongation factor GreA [Rickettsia felis URRWXCal2]
Length = 192
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 80/157 (50%), Positives = 115/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 31 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 90
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 91 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 150
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 151 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 187
>gi|307546737|ref|YP_003899216.1| transcription elongation factor GreA [Halomonas elongata DSM 2581]
gi|307218761|emb|CBV44031.1| transcription elongation factor GreA [Halomonas elongata DSM 2581]
Length = 158
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 109/158 (68%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G +++ EL + E RP +I AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNKVPMTVVGEQRLRDELEHLKSEARPNVIAAIAEAREHGDLKENAEYHAAREQQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ + ++ FG TV L+ ++ ++ Y+IVG+ EAD++ GL+
Sbjct: 61 RIQEIEGKLSNAQVIDVTKLPKTGKVIFGVTVGLINLDNDEEVTYRIVGEDEADIKVGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGKE G+ + V PGG+ YEI V +
Sbjct: 121 SVTSPIARALIGKEEGETVLVRTPGGDVEYEISSVEHL 158
>gi|292493676|ref|YP_003529115.1| transcription elongation factor GreA [Nitrosococcus halophilus Nc4]
gi|291582271|gb|ADE16728.1| transcription elongation factor GreA [Nitrosococcus halophilus Nc4]
Length = 158
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 74/157 (47%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T KG ++++EL+ + RPR++ AI+EARA+GDL ENAEY AA+E Q EG
Sbjct: 1 MSKVPLTEKGAQQLREELQELKTVVRPRVVAAIAEARAHGDLKENAEYHAAREEQGFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +LE+ + A++ID++ + D R+ FG TV LV ++ + +YQIVGD EAD++ +
Sbjct: 61 RIRDLEHQLAHAQIIDVNKLQKDGRVVFGVTVDLVNMDTDGEVSYQIVGDLEADIKENKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIARALIGK GD + V AP G YEI V +
Sbjct: 121 SVNSPIARALIGKREGDEVQVQAPSGVVIYEIAAVCY 157
>gi|114330476|ref|YP_746698.1| transcription elongation factor GreA [Nitrosomonas eutropha C91]
gi|114307490|gb|ABI58733.1| transcription elongation factor GreA [Nitrosomonas eutropha C91]
Length = 158
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ IP+T G +K++ EL + RP II AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MNAIPITQSGAEKLRAELHEMKTVHRPAIIAAIAEARSHGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A++I+ + ++ D FGATV LV+ ++ YQ+VGD EAD++ G +
Sbjct: 61 RIAELESKLSNAQIINPAALNADGACVFGATVDLVDLDTNTAVTYQVVGDDEADIKEGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ V APGG + YEIL V +I
Sbjct: 121 SISSPIARALIGKYAGDVAEVQAPGGIREYEILDVKYI 158
>gi|332993759|gb|AEF03814.1| transcription elongation factor GreA [Alteromonas sp. SN2]
Length = 158
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T+ G ++ EL + + RPRII++I+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MSQYPMTAHGAQLLRDELNELKTKTRPRIIQSIAEAREHGDLKENAEYHAAREQQSFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++ M ++ FG TV+++ ++ ++ Y+IVGD EAD++ +
Sbjct: 61 RIQDIEGKLSNAQIIDVTKMENKGKVIFGTTVTILNVDTDEETTYRIVGDDEADIKQNRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKEL D++++ P G EI++V +I
Sbjct: 121 SVNSPIARGLIGKELDDMVTIQTPAGSVEVEIIEVQYI 158
>gi|322379587|ref|ZP_08053924.1| transcription elongation factor GreA [Helicobacter suis HS1]
gi|321147981|gb|EFX42544.1| transcription elongation factor GreA [Helicobacter suis HS1]
Length = 161
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 68/154 (44%), Positives = 104/154 (67%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E R+
Sbjct: 2 KEPMSAYGYEKICAELKRLKEIERPEIVKEIDRAREHGDLKENAEYHAAKEKQVFIEARI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+L I+ A+VID ST+S +++FG+TV +++ N+ + +Y IVG E+D GL+S
Sbjct: 62 NDLSRILANAQVIDPSTLSHQKVSFGSTVRILDLNNDKEFSYTIVGSMESDPSRGLISFG 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A++L+GK GD ++V P GE +EIL + +
Sbjct: 122 SPVAKSLMGKSKGDEVTVLLPSGESEFEILDICY 155
>gi|307611501|emb|CBX01175.1| transcription elongation factor GreA [Legionella pneumophila 130b]
Length = 155
Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats.
Identities = 74/153 (48%), Positives = 110/153 (71%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G + ++ EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEGR+ EL
Sbjct: 1 MTVEGAEALKAELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEGRIQEL 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ +S SSP
Sbjct: 61 EAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKISYSSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARALIGKEL D ++V PGG YEI+QV +I
Sbjct: 121 IARALIGKELDDAVTVETPGGMVEYEIIQVQYI 153
>gi|332534013|ref|ZP_08409864.1| transcription elongation factor GreA [Pseudoalteromonas
haloplanktis ANT/505]
gi|332036562|gb|EGI73029.1| transcription elongation factor GreA [Pseudoalteromonas
haloplanktis ANT/505]
Length = 158
Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G D +++EL + RP+II I+ AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQSIPMTVRGADLLRKELNELKTVTRPKIIADIAVAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ ++ID++ M ++ FG TV++V ++ + Y+IVGD EAD+++ L+
Sbjct: 61 RIQEIEAKLSNVQIIDVTKMPNTGKVIFGTTVTIVNVDTDAEVKYRIVGDDEADIKNNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK++ D +S+ P G YEI++V ++
Sbjct: 121 SVNSPIARGLIGKQVDDAVSIQTPKGIVEYEIIEVEYL 158
>gi|157804252|ref|YP_001492801.1| transcription elongation factor GreA [Rickettsia canadensis str.
McKiel]
gi|166200696|sp|A8F083|GREA_RICCK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|157785515|gb|ABV74016.1| transcription elongation factor GreA [Rickettsia canadensis str.
McKiel]
Length = 162
Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats.
Identities = 81/157 (51%), Positives = 116/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 1 MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDIS +SGD I FGATV+L++ ++ +K Y +VG+ EAD+ V
Sbjct: 61 GRIKELEDMAARAEIIDISKLSGDNIKFGATVTLIDDDTEEKVTYIVVGEYEADITRKRV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE+++V +
Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVEVEY 157
>gi|255318889|ref|ZP_05360115.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Acinetobacter radioresistens SK82]
gi|262378856|ref|ZP_06072013.1| transcription elongation factor GreB [Acinetobacter radioresistens
SH164]
gi|255304145|gb|EET83336.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Acinetobacter radioresistens SK82]
gi|262300141|gb|EEY88053.1| transcription elongation factor GreB [Acinetobacter radioresistens
SH164]
Length = 158
Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL + ERPRI AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPEGKTALEKELHQLKTVERPRITAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A+VIDI + R+ FG TV++ ++ ++K Y+IVGD EAD + +
Sbjct: 61 RIQDIEGKLGAAQVIDIKDLEQNGRVVFGVTVTIENLDTEEQKTYKIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK GD + P GE YEI+ V +I
Sbjct: 121 SVNSPIARGLLGKSEGDEAKIVTPQGEVEYEIVSVEYI 158
>gi|157826347|ref|YP_001494067.1| transcription elongation factor GreA [Rickettsia akari str.
Hartford]
gi|157800305|gb|ABV75559.1| transcription elongation factor GreA [Rickettsia akari str.
Hartford]
Length = 192
Score = 174 bits (441), Expect = 5e-42, Method: Composition-based stats.
Identities = 81/157 (51%), Positives = 115/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I + ISEAR +GDLSENAEY+AA+E Q E
Sbjct: 31 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDISEAREHGDLSENAEYEAAREKQAFIE 90
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 91 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 150
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 151 SIASPIAKALIGKSVGDFVEVTTPRGSKSYEVVTVEY 187
>gi|78222984|ref|YP_384731.1| transcription elongation factor GreA [Geobacter metallireducens
GS-15]
gi|78194239|gb|ABB32006.1| GreA/GreB family elongation factor [Geobacter metallireducens
GS-15]
Length = 159
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 72/159 (45%), Positives = 112/159 (70%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +P+T + +D +Q+EL+ +EERPR+I+ I+EAR++GDLSENAEY AAK Q E
Sbjct: 1 MSYSVPMTKESYDSLQEELKRLIREERPRVIQDIAEARSHGDLSENAEYDAAKNRQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL+ + RA V+D+S + D++ FGATV+L + S ++ Y+IVG++EAD++ G +
Sbjct: 61 GRIQELQGKLARAHVVDLSGLKPDKVVFGATVTLYDTTSEEEVTYKIVGEEEADIKLGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLWI 158
S +SP+ +ALIG +L D + + P G K YEI+ + +I
Sbjct: 121 SCTSPVGKALIGHKLDDSVKIKVPSGSVKEYEIIDIKYI 159
>gi|325267980|ref|ZP_08134627.1| transcription elongation factor GreA [Kingella denitrificans ATCC
33394]
gi|324980521|gb|EGC16186.1| transcription elongation factor GreA [Kingella denitrificans ATCC
33394]
Length = 158
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 81/157 (51%), Positives = 114/157 (72%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T G ++++ EL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MKKIPLTVNGAEQLKAELQKLKSVARPAIIEAIAEARSHGDLSENAEYEAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELEN + A++I+ + +I FGATV L++ ++ +K YQIVGD EAD++ +
Sbjct: 61 RIAELENKLAHAQIINPKEIHAEGKIVFGATVQLLDLDTDEKAQYQIVGDDEADIKLFKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIARALIGKE GDI V AP G + YEIL+V +
Sbjct: 121 SVNSPIARALIGKEEGDIAEVQAPSGLREYEILKVAY 157
>gi|254482448|ref|ZP_05095687.1| transcription elongation factor GreA subfamily [marine gamma
proteobacterium HTCC2148]
gi|214037139|gb|EEB77807.1| transcription elongation factor GreA subfamily [marine gamma
proteobacterium HTCC2148]
Length = 158
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G ++ EL ++ ERPRI AI++AR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MNKVPMTVAGEAALRSELEHLKKVERPRISDAIADAREHGDLKENAEYHAAREQQSFAEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ +VID++ ++ ++ FG TV L+ S + Y IVG+ EADV++ +
Sbjct: 61 RIMEIEGKLSNCQVIDVTQITRTGKVIFGTTVDLINVESDETVTYTIVGEDEADVKNNRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARA+IGKE GD++ V APGG+ YEI QV I
Sbjct: 121 SVGSPIARAMIGKEEGDVVLVKAPGGDIEYEIDQVQHI 158
>gi|39996379|ref|NP_952330.1| transcription elongation factor GreA [Geobacter sulfurreducens PCA]
gi|39983259|gb|AAR34653.1| transcription elongation factor GreA [Geobacter sulfurreducens PCA]
gi|298505389|gb|ADI84112.1| transcription elongation factor GreA [Geobacter sulfurreducens
KN400]
Length = 158
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 111/158 (70%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M IP+T + ++ +Q+EL+ +EERPR+I+ I+EAR +GDLSENAEY AAK Q E
Sbjct: 1 MSHTIPMTKESYEALQEELKRLIREERPRVIQDIAEARGHGDLSENAEYDAAKNRQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL+ + RA V+D++ M D++ FGATV+L + + ++ Y+IVG++EAD++ G +
Sbjct: 61 GRILELQGKLARAYVVDLTGMKPDKVVFGATVTLYDTATEEEVTYKIVGEEEADIKLGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S +SP+ +ALIG +L D + + P G K YEI+ + ++
Sbjct: 121 SCTSPVGKALIGHKLDDSVKIKVPSGLKEYEIIDIKYV 158
>gi|198282924|ref|YP_002219245.1| transcription elongation factor GreA [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218665891|ref|YP_002425127.1| transcription elongation factor GreA [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|198247445|gb|ACH83038.1| transcription elongation factor GreA [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518104|gb|ACK78690.1| transcription elongation factor GreA [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 158
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 104/158 (65%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DKIP+T G +++ EL + +RP +I+AI+EARA GDLSENAEY AAKE Q E
Sbjct: 1 MNDKIPMTVIGAQRLRDELHRLKTVDRPTVIEAIAEARAKGDLSENAEYDAAKEQQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ E+E+ + RA+VID ++ A +E G++ YQIVGD EAD++ +
Sbjct: 61 GRIREVEDYLARAQVIDPKQLNTGGKIVFAATVELEDAEGNEVTYQIVGDAEADLKENKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD + V APGG + Y IL V +I
Sbjct: 121 SISSPIARALIGKHEGDPVEVRAPGGTREYTILAVRYI 158
>gi|15599949|ref|NP_253443.1| transcription elongation factor GreA [Pseudomonas aeruginosa PAO1]
gi|107103852|ref|ZP_01367770.1| hypothetical protein PaerPA_01004923 [Pseudomonas aeruginosa PACS2]
gi|116052902|ref|YP_793219.1| transcription elongation factor GreA [Pseudomonas aeruginosa
UCBPP-PA14]
gi|152984538|ref|YP_001350797.1| transcription elongation factor GreA [Pseudomonas aeruginosa PA7]
gi|218893850|ref|YP_002442719.1| transcription elongation factor GreA [Pseudomonas aeruginosa
LESB58]
gi|254238509|ref|ZP_04931832.1| transcription elongation factor GreA [Pseudomonas aeruginosa C3719]
gi|254244343|ref|ZP_04937665.1| transcription elongation factor GreA [Pseudomonas aeruginosa 2192]
gi|296391582|ref|ZP_06881057.1| transcription elongation factor GreA [Pseudomonas aeruginosa PAb1]
gi|313109736|ref|ZP_07795676.1| transcription elongation factor GreA [Pseudomonas aeruginosa 39016]
gi|25453009|sp|Q9HV46|GREA_PSEAE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|9951018|gb|AAG08141.1|AE004889_4 transcription elongation factor GreA [Pseudomonas aeruginosa PAO1]
gi|115588123|gb|ABJ14138.1| transcription elongation factor GreA [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126170440|gb|EAZ55951.1| transcription elongation factor GreA [Pseudomonas aeruginosa C3719]
gi|126197721|gb|EAZ61784.1| transcription elongation factor GreA [Pseudomonas aeruginosa 2192]
gi|150959696|gb|ABR81721.1| transcription elongation factor GreA [Pseudomonas aeruginosa PA7]
gi|218774078|emb|CAW29894.1| transcription elongation factor GreA [Pseudomonas aeruginosa
LESB58]
gi|310882178|gb|EFQ40772.1| transcription elongation factor GreA [Pseudomonas aeruginosa 39016]
Length = 158
Score = 173 bits (440), Expect = 5e-42, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++E++ + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MSKFPMTVQGARALEEEVKHLKGVLRPQISQAIAEARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ + ++ FG TV + + + YQIVGD EAD++ G +
Sbjct: 61 RIRDIEAKLSNAQVIDVTAIPHSGKVIFGTTVDIANVETDETVTYQIVGDDEADIKGGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGK GD + V PGG+ YEI++V I
Sbjct: 121 SVNSPIARALIGKTEGDAVLVRTPGGDVEYEIVEVRHI 158
>gi|294670994|ref|ZP_06735850.1| hypothetical protein NEIELOOT_02701 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307481|gb|EFE48724.1| hypothetical protein NEIELOOT_02701 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 158
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 77/158 (48%), Positives = 117/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++ EL+ + RP +I AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MKKIPLTIRGAELLKNELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ ++ A +I+ + + + ++ FGAT+ L + +SGD YQIVG+ EAD+++G +
Sbjct: 61 RIAEIEHKLSHAHIINPAEIHAEGKVVFGATLMLEDLDSGDHVRYQIVGEDEADIKAGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARALIGKE GD+ V APGG + YEI++V ++
Sbjct: 121 SVVSPIARALIGKEEGDVAEVQAPGGVREYEIVEVQYV 158
>gi|123440804|ref|YP_001004795.1| transcription elongation factor GreA [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122087765|emb|CAL10551.1| transcription elongation factor [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318607370|emb|CBY28868.1| transcription elongation factor GreA [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 158
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T G +K+++EL + + RP+II I+ AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVNGAEKLREELDYLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ M + R+ FGATV ++ S +++ Y+IVGD EAD + L+
Sbjct: 61 RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVVSEEEQQYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ D++ + PGGE YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILTVDYV 158
>gi|224370120|ref|YP_002604284.1| GreA1 [Desulfobacterium autotrophicum HRM2]
gi|223692837|gb|ACN16120.1| GreA1 [Desulfobacterium autotrophicum HRM2]
Length = 175
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 71/154 (46%), Positives = 109/154 (70%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D+IP+T +G+ +++EL+ + ERP+ IKAI ARA+GDLSENAE+ AAK+ Q+ EGR
Sbjct: 22 DQIPITIEGYAALKEELQRLKTIERPQNIKAIEIARAHGDLSENAEFDAAKDRQSFIEGR 81
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ EL I A++ID +T+S D + F + V + +SG++ Y IVG +E+D+ G +S+
Sbjct: 82 IGELGYKIASAKIIDPATVSKDCVRFASRVVIENLDSGEEVEYMIVGQEESDIHKGKISV 141
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SSP+ AL+GK+ GD I + APGG++ YEI+ +L
Sbjct: 142 SSPLGMALLGKQPGDEIVIQAPGGKRNYEIVDIL 175
>gi|221134941|ref|ZP_03561244.1| transcription elongation factor GreA [Glaciecola sp. HTCC2999]
Length = 158
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T+ G + ++ EL+ + +RP II AI+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MTQYPMTAHGAEMLRAELQELKSVKRPEIITAIAEAREHGDLKENAEYHAAREQQSFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++ M + +I FG TV+L+ + D+ Y+IVGD EAD+++ L+
Sbjct: 61 RIQDIEGKLSNAQIIDVTKMENTGKIIFGTTVTLINCETDDEITYKIVGDDEADIKNNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK + D+ ++ P G +E+++V +I
Sbjct: 121 SVNSPIARGLIGKMVDDVANIQTPKGVVEFEVIEVQYI 158
>gi|304391328|ref|ZP_07373272.1| transcription elongation factor GreA [Ahrensia sp. R2A130]
gi|303296684|gb|EFL91040.1| transcription elongation factor GreA [Ahrensia sp. R2A130]
Length = 157
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 97/157 (61%), Positives = 123/157 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G ++ E + R E+R RI+ AISEAR +GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTKPGHAALEAEYKRRTSEDRHRIVAAISEAREHGDLSENAEYHAAKEQQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE++I RAEVIDIS MSGD I FGATV L ++ +G++K+YQIVGDQEADV SG +S
Sbjct: 61 RIMELEDVIARAEVIDISKMSGDTIRFGATVKLEDEQNGEEKHYQIVGDQEADVASGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPI+RALIGKE GD + V APGG + YEIL V ++
Sbjct: 121 ISSPISRALIGKEEGDSVEVAAPGGARAYEILSVQYV 157
>gi|317050953|ref|YP_004112069.1| transcription elongation factor GreA [Desulfurispirillum indicum
S5]
gi|316946037|gb|ADU65513.1| transcription elongation factor GreA [Desulfurispirillum indicum
S5]
Length = 156
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 73/154 (47%), Positives = 113/154 (73%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+IP+T G + +++EL ++ ER ++ + I+ ARA+GDL ENAEY AA+E Q+ EG
Sbjct: 1 MDRIPMTKTGLENLRKELEHLKKNERHQVKEEIAVARAHGDLKENAEYHAAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AELE+ + RAEVID ST++ D++ FG+ V+L+ + + Y +VGD EAD +S L++
Sbjct: 61 RIAELEDKVLRAEVIDPSTLASDKVLFGSQVTLLNLETDSEVVYTVVGDDEADYKSNLIA 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+SSP+A++LIGK +GD + VNAP G YEIL++
Sbjct: 121 VSSPLAQSLIGKRVGDEVVVNAPKGAVEYEILKI 154
>gi|322419242|ref|YP_004198465.1| transcription elongation factor GreA [Geobacter sp. M18]
gi|320125629|gb|ADW13189.1| transcription elongation factor GreA [Geobacter sp. M18]
Length = 158
Score = 173 bits (440), Expect = 6e-42, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 114/157 (72%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +P+T + ++ +Q++L+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E
Sbjct: 1 MSQTVPLTKESYEALQEDLKRLIKEERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL++ + RA V+D+S + D++ FGATV++ + ++ ++ Y+IVG+ EAD++ G +
Sbjct: 61 GRILELQDKLARAYVVDLSNLKPDKVVFGATVTVYDTSTEEEITYKIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+ +ALIG +L D + V+ P G K YEI+++ +
Sbjct: 121 SCTSPVGKALIGHKLDDSVRVSVPSGMKEYEIIEIRY 157
>gi|257095281|ref|YP_003168922.1| transcription elongation factor GreA [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047805|gb|ACV36993.1| transcription elongation factor GreA [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 158
Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats.
Identities = 82/157 (52%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T G +K++ EL + ERPR I AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MSKIPLTVHGAEKLRAELHHLKTVERPRAIAAIAEARSHGDLSENAEYDAAKERQGFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ + A++ID + D R FGAT+ L ++ SG + +YQIVG+ EAD+++G +
Sbjct: 61 RIKEVESKLANAQIIDPKLLDADGRCVFGATLELEDQESGSRVSYQIVGEDEADIKAGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIARALIGK GDI V APGG + YE+L V +
Sbjct: 121 SINSPIARALIGKFAGDIAEVQAPGGVREYEVLNVRY 157
>gi|88857845|ref|ZP_01132487.1| transcription elongation factor greA [Pseudoalteromonas tunicata
D2]
gi|88819462|gb|EAR29275.1| transcription elongation factor greA [Pseudoalteromonas tunicata
D2]
Length = 158
Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G + ++ EL + +RP+II I+ AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQQIPMTVRGVELLRAELNELKTVKRPKIIADIAVAREHGDLKENAEYHAAREEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ +VID++ M+ + ++ FG TV++V + + Y+IVGD EA++++ L+
Sbjct: 61 RIQEIEAKLSNVQVIDVTKMANNGKVIFGTTVTIVNVETDAEVTYRIVGDDEANIKNNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK + D ++++ P G YEI+ V +I
Sbjct: 121 SVNSPIARGLVGKSVDDAVTISTPKGNVEYEIIAVEYI 158
>gi|58582509|ref|YP_201525.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58427103|gb|AAW76140.1| transcriptional elongation factor [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 170
Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats.
Identities = 78/154 (50%), Positives = 119/154 (77%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +
Sbjct: 16 PMTSKGALRLREELEQLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 75
Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ GL++ISS
Sbjct: 76 LEGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISS 135
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 136 PLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 169
>gi|15604691|ref|NP_221209.1| transcription elongation factor GreA [Rickettsia prowazekii str.
Madrid E]
gi|121608|sp|P27640|GREA_RICPR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|46346|emb|CAA78107.1| GreA [Rickettsia prowazekii]
gi|434678|gb|AAB81401.1| GreA [Rickettsia prowazekii]
gi|3861386|emb|CAA15285.1| TRANSCRIPTION ELONGATION FACTOR GREA (greA) [Rickettsia prowazekii]
gi|292572525|gb|ADE30440.1| Transcription elongation factor GreA [Rickettsia prowazekii Rp22]
Length = 162
Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats.
Identities = 80/157 (50%), Positives = 114/157 (72%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 1 MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 61 GRIKELEDMTARAEIIDICKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITKKRV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGLKSYEVVTVEY 157
>gi|319403838|emb|CBI77424.1| transcription elongation factor GreA [Bartonella rochalimae ATCC
BAA-1498]
gi|319406848|emb|CBI80483.1| transcription elongation factor GreA [Bartonella sp. 1-1C]
Length = 157
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 101/157 (64%), Positives = 137/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQ+ER RII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERRRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVI++S +SGD+I FGAT++L+++++ ++K YQIVGDQEADV++G +S
Sbjct: 61 RINELEDCIARAEVINVSRLSGDKIKFGATINLLDEDTEERKVYQIVGDQEADVKTGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGTHNYEIIKVQYI 157
>gi|303256868|ref|ZP_07342882.1| transcription elongation factor GreA [Burkholderiales bacterium
1_1_47]
gi|330998883|ref|ZP_08322610.1| transcription elongation factor GreA [Parasutterella
excrementihominis YIT 11859]
gi|302860359|gb|EFL83436.1| transcription elongation factor GreA [Burkholderiales bacterium
1_1_47]
gi|329576097|gb|EGG57616.1| transcription elongation factor GreA [Parasutterella
excrementihominis YIT 11859]
Length = 157
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 72/155 (46%), Positives = 110/155 (70%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T++G ++ EL+ + ++RP +++AI+EAR GDLSENAEY AA+E Q EGR+
Sbjct: 3 IPITARGAKMLKDELQRLKTQDRPAVVQAIAEAREKGDLSENAEYDAARESQAFIEGRIL 62
Query: 65 ELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE+ I + +VID ST+ ++ F ATV++ + +G+++ QIVG+ E+D + G +S++
Sbjct: 63 ELESKIAQFQVIDPSTLPDNGKVVFSATVTIEDVETGNRQTVQIVGNDESDTKLGRISVA 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARALIGK GD + V APGG YEI+ V +I
Sbjct: 123 SPMARALIGKSEGDEVEVQAPGGLSEYEIISVQYI 157
>gi|296108269|ref|YP_003619970.1| transcription elongation factor GreA [Legionella pneumophila
2300/99 Alcoy]
gi|295650171|gb|ADG26018.1| transcription elongation factor GreA [Legionella pneumophila
2300/99 Alcoy]
Length = 155
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 74/153 (48%), Positives = 111/153 (72%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G + +++EL + +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEGR+ EL
Sbjct: 1 MTVEGAEALKEELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEGRIQEL 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A++IDIS + + ++ FG+TV++ +G + Y+IVG+ EAD++ +S SSP
Sbjct: 61 EAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKISYSSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARALIGKEL D ++V PGG YEI+QV +I
Sbjct: 121 IARALIGKELDDAVTVETPGGMVEYEIIQVQYI 153
>gi|124266456|ref|YP_001020460.1| transcription elongation factor GreA [Methylibium petroleiphilum
PM1]
gi|124259231|gb|ABM94225.1| transcription elongation factor GreA [Methylibium petroleiphilum
PM1]
Length = 168
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 82/159 (51%), Positives = 118/159 (74%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ IP+T +G +K+++EL + ER +I+AI+EARA GDLSENAEY+AAK+ Q E
Sbjct: 10 IMATIPLTKRGAEKLKEELHRLKSVERHAVIQAIAEARAQGDLSENAEYEAAKDKQGFIE 69
Query: 61 GRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E+ + A++ID + + G R+ FGATV L E++SGD YQIVGD EAD++ GL
Sbjct: 70 GRILEIESKMAAAQIIDPAMLDAGGRVVFGATVELEEESSGDSVTYQIVGDDEADLKQGL 129
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S+SSPIARA+IGKE GD+ APGG + YEI++V ++
Sbjct: 130 ISVSSPIARAMIGKEAGDVAEFQAPGGTRRYEIVEVRYL 168
>gi|254487531|ref|ZP_05100736.1| transcription elongation factor GreA [Roseobacter sp. GAI101]
gi|214044400|gb|EEB85038.1| transcription elongation factor GreA [Roseobacter sp. GAI101]
Length = 160
Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats.
Identities = 82/155 (52%), Positives = 118/155 (76%), Gaps = 1/155 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KIP+T G ++ EL+ + ERP II+AI+EAR +GDLSENAEY +AKE Q+ EGR
Sbjct: 6 EKIPMTRAGHSALETELKHLKTVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEGR 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE I+ A+VID + MSG I FGA V+LV++++ ++K YQIVG+ EA+++ GL++I
Sbjct: 66 VKELEGAISLADVIDPAKMSG-AIKFGAKVTLVDEDTDEEKTYQIVGEYEANIEKGLLNI 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALIGK+ GD + V PGG K+YE+L++++
Sbjct: 125 KSPIARALIGKDEGDSVEVRTPGGVKSYEVLKIIY 159
>gi|254437943|ref|ZP_05051437.1| transcription elongation factor GreA subfamily [Octadecabacter
antarcticus 307]
gi|198253389|gb|EDY77703.1| transcription elongation factor GreA subfamily [Octadecabacter
antarcticus 307]
Length = 156
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 117/156 (75%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T GF+K+ EL+ + ERP II+AIS+AR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MDKIPLTRAGFNKLDAELKHLKSVERPAIIRAISDAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ A+VID+S +SG + FGA V+LV++ + + YQIVG+ EAD++ G ++
Sbjct: 61 RVKELEGAISLADVIDVSKLSG-TVKFGAHVTLVDEATDKETTYQIVGEYEADIEQGRLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIARALIGK+ GD + V PGG K+YEIL +++
Sbjct: 120 MKSPIARALIGKDEGDSVEVRTPGGVKSYEILTIVF 155
>gi|146283640|ref|YP_001173793.1| transcription elongation factor GreA [Pseudomonas stutzeri A1501]
gi|145571845|gb|ABP80951.1| transcription elongation factor GreA [Pseudomonas stutzeri A1501]
gi|327482035|gb|AEA85345.1| transcription elongation factor GreA [Pseudomonas stutzeri DSM
4166]
Length = 158
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++EL+ + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MTKFPMTIQGARALEEELKHLKTVLRPQITQAIAEARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A+VIDI+++ ++ FG TV + + ++ YQIVGD EAD++ G +
Sbjct: 61 RIRDIEGRLQNAQVIDIASIAPTGKVIFGTTVDIANVETDEQVTYQIVGDDEADIKQGKL 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGKE GD+++V P G YEI++V I
Sbjct: 121 SVSSPIARALIGKEEGDVVAVKTPSGLIEYEIVEVRHI 158
>gi|50085902|ref|YP_047412.1| transcription elongation factor GreA [Acinetobacter sp. ADP1]
gi|49531878|emb|CAG69590.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Acinetobacter sp. ADP1]
Length = 158
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + ++ID+ + R+ FG TV++ ++ ++K Y+IVGD EAD + +
Sbjct: 61 RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK GD + P GE YEI+ V +I
Sbjct: 121 SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI 158
>gi|304387186|ref|ZP_07369429.1| transcription elongation factor GreA [Neisseria meningitidis ATCC
13091]
gi|304338753|gb|EFM04864.1| transcription elongation factor GreA [Neisseria meningitidis ATCC
13091]
gi|325132389|gb|EGC55082.1| transcription elongation factor greA [Neisseria meningitidis M6190]
gi|325136526|gb|EGC59130.1| transcription elongation factor greA [Neisseria meningitidis M0579]
Length = 173
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 16 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 75
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 76 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 135
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 136 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 173
>gi|148263922|ref|YP_001230628.1| transcription elongation factor GreA [Geobacter uraniireducens Rf4]
gi|146397422|gb|ABQ26055.1| transcription elongation factor GreA [Geobacter uraniireducens Rf4]
Length = 158
Score = 173 bits (439), Expect = 8e-42, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 111/157 (70%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +P+T + ++ +Q++L+ +EERP++I+ I+EAR++GDLSENAEY AAK Q E
Sbjct: 1 MSQSVPLTKESYEFLQEDLKRLIKEERPKVIQDIAEARSHGDLSENAEYDAAKHRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL + + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ G +
Sbjct: 61 GRIQELSDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEEVTYKIVGEDEADIKIGKM 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+ +ALIG +L D + V+ P G K YEI+ + +
Sbjct: 121 SCTSPVGKALIGHKLDDTVKVSVPSGMKEYEIIDIKY 157
>gi|127513765|ref|YP_001094962.1| transcription elongation factor GreA [Shewanella loihica PV-4]
gi|126639060|gb|ABO24703.1| transcription elongation factor GreA [Shewanella loihica PV-4]
Length = 158
Score = 173 bits (438), Expect = 8e-42, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G +++++EL + + E+RP+I +AI AR GDL ENAEY AA+E Q L E
Sbjct: 1 MNKVPMTVVGANQLREELDFLKFEKRPKIAEAIGIARELGDLKENAEYHAAREEQGLCEA 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++ M + R+ FG TV+++ +S ++ Y+IVG+ EAD+++ L+
Sbjct: 61 RVRDIEGKLSHAQIIDVTKMENTGRVIFGTTVTILNLDSDEEFTYRIVGEDEADIKANLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK GD +S+ PGG YEI V +I
Sbjct: 121 SVTSPIARGLVGKSEGDEVSIQTPGGMTDYEITAVEYI 158
>gi|21242607|ref|NP_642189.1| transcription elongation factor GreA [Xanthomonas axonopodis pv.
citri str. 306]
gi|78047466|ref|YP_363641.1| transcription elongation factor GreA [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|294624591|ref|ZP_06703266.1| transcription elongation factor GreA [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294666706|ref|ZP_06731942.1| transcription elongation factor GreA [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|25452987|sp|Q8PLD9|GREA_XANAC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|21108069|gb|AAM36725.1| transcriptional elongation factor [Xanthomonas axonopodis pv. citri
str. 306]
gi|78035896|emb|CAJ23587.1| transcriptional elongation factor [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|292601126|gb|EFF45188.1| transcription elongation factor GreA [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292603531|gb|EFF46946.1| transcription elongation factor GreA [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 158
Score = 173 bits (438), Expect = 8e-42, Method: Composition-based stats.
Identities = 78/154 (50%), Positives = 119/154 (77%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +
Sbjct: 4 PMTSKGAQRLREELEHLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63
Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE+ ++ AE+IDI+ +S G +I FGATV+L + + ++K YQIVGD EAD++ GL++ISS
Sbjct: 64 LESELSHAEIIDITKLSAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 124 PLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 157
>gi|90409512|ref|ZP_01217553.1| transcription elongation factor greA (transcript cleavage factor)
[Psychromonas sp. CNPT3]
gi|90309381|gb|EAS37625.1| transcription elongation factor greA (transcript cleavage factor)
[Psychromonas sp. CNPT3]
Length = 159
Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T+ G +++EL + E RPRI+ AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MVQYPMTATGAAALRKELERLKNETRPRIVAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++IDI+ ++ + R+ FG TV++V + ++ Y+IVGD E+D++ L+
Sbjct: 61 RIQDIEAKLSHAQIIDINKLANNGRVIFGTTVTIVNVETDEEVTYKIVGDDESDIKLNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK + D +++ PGG YEI+ V +I
Sbjct: 121 SVNSPIARGLIGKMVDDELTIQTPGGAIEYEIINVQYI 158
>gi|257454668|ref|ZP_05619924.1| transcription elongation factor GreA [Enhydrobacter aerosaccus
SK60]
gi|257447978|gb|EEV22965.1| transcription elongation factor GreA [Enhydrobacter aerosaccus
SK60]
Length = 158
Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats.
Identities = 69/157 (43%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL+ + +RPRI AI+EAR +GDL ENAEY AA+E Q E
Sbjct: 1 MQRYPMTPQGHAALEEELKQLKTVDRPRITAAIAEAREHGDLKENAEYHAAREQQGFCEA 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + AEVID + R+ FG TV + ++ ++K Y+IVGD EAD ++ +
Sbjct: 61 RIRDIEAKLGGAEVIDPLKLPQEGRVVFGVTVVIENLDTEEQKRYKIVGDDEADFKANKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIAR LIGK GD + P GE YEI++VL+
Sbjct: 121 SINSPIARGLIGKSEGDEAKIQTPSGEVEYEIVEVLY 157
>gi|194290079|ref|YP_002005986.1| transcription elongation factor grea [Cupriavidus taiwanensis LMG
19424]
gi|193223914|emb|CAQ69923.1| transcription elongation factor [Cupriavidus taiwanensis LMG 19424]
Length = 158
Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G + +++EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPITKRGAELLKEELQRLKAVERPAVINAISEARAQGDLSENAEYDAAKEKQAFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A++ID + + D RI FGATV L + SG +YQIVGD EAD+++G +
Sbjct: 61 RILEVEAKLSAAQIIDPTQLDTDGRIVFGATVDLEDLESGSPVSYQIVGDDEADLEAGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V APGGE+ YE++ V +I
Sbjct: 121 SVSSPIARALIGKFEGDVATVLAPGGEREYEVITVRYI 158
>gi|319405277|emb|CBI78891.1| transcription elongation factor GreA [Bartonella sp. AR 15-3]
Length = 157
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 101/157 (64%), Positives = 137/157 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ GF+ +++ELRWRQQ+ER RII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1 MEKVPMTTAGFESLKEELRWRQQQERRRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+ I RAEVI++S +SGD+I FGAT++L+++++ ++K YQIVGDQEADV++G +S
Sbjct: 61 RINELEDCIARAEVINVSRLSGDKIKFGATINLLDEDTEERKVYQIVGDQEADVKTGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ISSPIARALIGK+ GD+I VNAPGG YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157
>gi|304311954|ref|YP_003811552.1| Transcription elongation factor [gamma proteobacterium HdN1]
gi|301797687|emb|CBL45909.1| Transcription elongation factor [gamma proteobacterium HdN1]
Length = 159
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 74/159 (46%), Positives = 116/159 (72%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M+ ++P+T +G ++++EL ++ ERPR++ AI+EARA+GDL ENAEY AAKE Q E
Sbjct: 1 MIKRVPMTVEGEVRLREELDNLKKVERPRVVAAIAEARAHGDLKENAEYHAAKEQQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+AE+E+ ++ A+VIDI+ + ++ FG T+ L + + +++ ++IVG+ EAD + G
Sbjct: 61 GRIAEIESKLSEAQVIDITRIAPTGKVIFGVTLKLYDVDKDEERAFKIVGEDEADFKEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S+ SPIAR LIGK +GD +SV+ PGG TYEIL+V +
Sbjct: 121 ISVGSPIARGLIGKFVGDEVSVDTPGGGVTYEILEVNHV 159
>gi|161870299|ref|YP_001599469.1| transcription elongation factor GreA [Neisseria meningitidis
053442]
gi|161595852|gb|ABX73512.1| transcription elongation factor [Neisseria meningitidis 053442]
Length = 173
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 16 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 75
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 76 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 135
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 136 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 173
>gi|120597887|ref|YP_962461.1| transcription elongation factor GreA [Shewanella sp. W3-18-1]
gi|146293941|ref|YP_001184365.1| transcription elongation factor GreA [Shewanella putrefaciens
CN-32]
gi|120557980|gb|ABM23907.1| transcription elongation factor GreA [Shewanella sp. W3-18-1]
gi|145565631|gb|ABP76566.1| transcription elongation factor GreA [Shewanella putrefaciens
CN-32]
gi|319427318|gb|ADV55392.1| GreA/GreB family elongation factor [Shewanella putrefaciens 200]
Length = 158
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T G +++++EL + E RP+I +AI+ AR GDL ENAEY AA+E Q + E
Sbjct: 1 MTKVPMTVVGAEQLRKELDILKFERRPKITEAIASARELGDLKENAEYHAAREEQGICEA 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++ M + RI FGATV+++ ++ + Y+IVGD EA+++ L+
Sbjct: 61 RIRDIEGKLSNAQIIDVTKMVNNGRIIFGATVTILNLDTDAEVTYRIVGDDEANIKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK GD +S+ PGG YEI+ V +I
Sbjct: 121 SVNSPIARGLVGKNEGDEVSITTPGGVTDYEIISVQYI 158
>gi|114763611|ref|ZP_01443016.1| transcription elongation factor GreA [Pelagibaca bermudensis
HTCC2601]
gi|114543891|gb|EAU46903.1| transcription elongation factor GreA [Roseovarius sp. HTCC2601]
Length = 156
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 78/156 (50%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KI +T GF ++ EL+ + +ERP +I+AI+EAR GDL ENAEY +A+E Q EG
Sbjct: 1 MEKILITRAGFTALETELKTLKSKERPAVIQAIAEARELGDLKENAEYHSAREKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E +++ AEVID + +SG + FGATV +V++++ ++K +QIVG+ EA++ GL++
Sbjct: 61 RIKEIEAVMSLAEVIDPTKLSG-AVKFGATVKVVDEDTDEEKTWQIVGEHEANIDKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGKE GD + V PGGEK+YEIL + +
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGEKSYEILSIDY 155
>gi|24372774|ref|NP_716816.1| transcription elongation factor GreA [Shewanella oneidensis MR-1]
gi|24346855|gb|AAN54261.1|AE015563_1 transcription elongation factor GreA [Shewanella oneidensis MR-1]
Length = 158
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T G +++++EL + E RP+I +AI+ AR GDL ENAEY AA+E Q + E
Sbjct: 1 MTKVPMTVVGAEQLRKELDMLKFERRPKITEAIASARELGDLKENAEYHAAREEQGICEA 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++ M + RI FGATV+++ ++ + Y+IVGD EA+++ L+
Sbjct: 61 RIRDIEGKLSNAQIIDVTKMVNNGRIIFGATVTILNLDTDAEVTYRIVGDDEANIKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK GD +S+ PGG YEI+ V +I
Sbjct: 121 SVNSPIARGLVGKNEGDEVSITTPGGLTDYEIISVQYI 158
>gi|253826205|gb|ACT36389.1| transcriptional elogation factor GreA [uncultured bacterium L11E10]
Length = 158
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 77/153 (50%), Positives = 110/153 (71%), Gaps = 1/153 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G ++++EL + + +RP +I AI+EARA+GDL ENAEY AA+E Q EGR+ +
Sbjct: 4 PITKQGAQRLREELDYLKSVKRPEVIAAIAEARAHGDLKENAEYHAAREQQGFIEGRINQ 63
Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ AEVID++ + G R+ FGATV L ++ ++K YQIVGD EAD++ L++ISS
Sbjct: 64 LEAELSTAEVIDVAVLDAGSRVVFGATVILAHVDTDEQKTYQIVGDLEADIKQSLIAISS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
PIARALIGK GD + + AP GE YEI+ V +
Sbjct: 124 PIARALIGKNEGDSVVIQAPAGEHEYEIISVSY 156
>gi|117619726|ref|YP_857805.1| transcription elongation factor GreA [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117561133|gb|ABK38081.1| transcription elongation factor GreA [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 158
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 119/158 (75%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ P+T +G +K+++EL + + E RP+II+AI++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNHTPMTVRGAEKLREELEYLKTELRPQIIEAIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A+VIDI+ M+ + R+ FGATV+L++ + ++ Y+IVGD EAD++ ++
Sbjct: 61 RIQEIESKLSNAQVIDITKMTNNGRVIFGATVTLLKSETEEEVVYRIVGDDEADIKQNMI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGKE+ D+ V P G+ YEIL+V ++
Sbjct: 121 SVNSPIARALIGKEVDDVAIVKTPAGDVEYEILEVAYL 158
>gi|149909289|ref|ZP_01897945.1| transcription elongation factor GreA [Moritella sp. PE36]
gi|149807606|gb|EDM67554.1| transcription elongation factor GreA [Moritella sp. PE36]
Length = 159
Score = 173 bits (438), Expect = 1e-41, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 103/159 (64%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + IP+T++G + ++ EL + RP I+ +I+ AR +GDL ENAEY AA+E Q E
Sbjct: 1 MSNMIPMTARGAENLRIELEHLKTVRRPEIVSSIAVAREHGDLKENAEYHAAREEQGFCE 60
Query: 61 GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ ++E ++ ++ID++ ++ + R+ FG TV + + ++ Y +VGD EA+++
Sbjct: 61 GRVQDIEWKLSNCQIIDVTKIANNGRVIFGCTVKIYNTETEEEITYNLVGDDEANIKENR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SI+SPIAR L+GK + D+ V PGG +EI+ V +I
Sbjct: 121 ISINSPIARGLVGKSVDDVAMVKTPGGAIEFEIVSVEYI 159
>gi|238899018|ref|YP_002924700.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
gi|259647646|sp|C4K7K9|GREA_HAMD5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|229466778|gb|ACQ68552.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
pisum)]
Length = 158
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G +K+++EL+ + RP+II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MTQIPMTLRGAEKLREELQHLKSVLRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A++ID++ + + + FGATV+++ +S +KK YQIVGD EA+ + L+
Sbjct: 61 RIQEIESKLSHAQIIDVTKIANKGIVIFGATVTVLNTHSEEKKIYQIVGDDEANFKKDLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LI K++ D+ ++ PGGE YEIL V +
Sbjct: 121 SVNSPIARGLIAKKISDVAVIHTPGGEVEYEILDVKYC 158
>gi|268319887|ref|YP_003293543.1| Transcription elongation factor greA [Lactobacillus johnsonii
FI9785]
gi|262398262|emb|CAX67276.1| Transcription elongation factor greA [Lactobacillus johnsonii
FI9785]
Length = 160
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T++G +K+Q+EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MAEKVYPMTAEGKEKLQKELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ++E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G
Sbjct: 61 EQRIVQIEQMLKYAQVVDADSVDPNEVSIGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK+ G+ ++VN PGG I V
Sbjct: 121 ISNDSPIAQALLGKKKGEKVTVNTPGGTFDVTINDVK 157
>gi|89052989|ref|YP_508440.1| transcription elongation factor GreA [Jannaschia sp. CCS1]
gi|122999643|sp|Q28V47|GREA_JANSC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|88862538|gb|ABD53415.1| GreA/GreB family elongation factor [Jannaschia sp. CCS1]
Length = 156
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 84/157 (53%), Positives = 118/157 (75%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T KG + + EL+ + ERP IIKAI+EAR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPMTPKGLEAMNGELKQLKSVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ A+VID +T+SG I FGATV LV++ + ++K Y IVG+ EAD++ GL++
Sbjct: 61 RIKELEGSISLAQVIDPATLSG-AIKFGATVDLVDEETEEEKTYMIVGEAEADIEKGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARALIGKE GD + V PGG K +EI+++ ++
Sbjct: 120 IKSPLARALIGKEEGDSVEVRTPGGAKGFEIVKISYV 156
>gi|322514696|ref|ZP_08067723.1| transcription elongation factor GreA [Actinobacillus ureae ATCC
25976]
gi|322119345|gb|EFX91458.1| transcription elongation factor GreA [Actinobacillus ureae ATCC
25976]
Length = 158
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G + I++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGAELIREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A++ID++ M + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL+
Sbjct: 61 RIQEIEGKLGNAQIIDVTKMVNNGKVIFGATVGLVNADTDEEVTYRIVGDDEANIKEGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I
Sbjct: 121 SVNSPIARGLVGKEVDDSVSIVTPGGKVEFDIISVEYI 158
>gi|213421313|ref|ZP_03354379.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
Length = 150
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 68/150 (45%), Positives = 109/150 (72%), Gaps = 1/150 (0%)
Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
+G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ ++E
Sbjct: 1 RGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAK 60
Query: 70 ITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR
Sbjct: 61 LSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIAR 120
Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVLWI 158
LIGKE D++ + PGG+ YE+L+V ++
Sbjct: 121 GLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 150
>gi|113868419|ref|YP_726908.1| transcription elongation factor GreA [Ralstonia eutropha H16]
gi|113527195|emb|CAJ93540.1| transcription elongation factor GreA [Ralstonia eutropha H16]
Length = 158
Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats.
Identities = 84/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G + +++EL+ + ERP +I AISEARA GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPITKRGAELLKEELQRLKAVERPAVINAISEARAQGDLSENAEYDAAKEKQAFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A++ID + + D RI FGATV L + SG +YQIVGD EAD+ G +
Sbjct: 61 RILEVEAKLSAAQIIDPTQLDTDGRIVFGATVDLEDLESGSPVSYQIVGDDEADIDVGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK GD+ +V APGGE+ YE++ V +I
Sbjct: 121 SVSSPIARALIGKFEGDVATVLAPGGEREYEVITVRYI 158
>gi|34581077|ref|ZP_00142557.1| transcription elongation factor EF [Rickettsia sibirica 246]
gi|25453000|sp|Q92FZ5|GREA_RICCN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|28262462|gb|EAA25966.1| transcription elongation factor EF [Rickettsia sibirica 246]
Length = 162
Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats.
Identities = 80/157 (50%), Positives = 114/157 (72%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 1 MNTKFPITAKGFEKLEHELKHLKHVERKKISADIAEAREHGDLSENAEYEAAREKQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 61 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 157
>gi|197118284|ref|YP_002138711.1| transcription elongation factor GreA [Geobacter bemidjiensis Bem]
gi|197087644|gb|ACH38915.1| transcription elongation factor GreA [Geobacter bemidjiensis Bem]
Length = 158
Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 111/157 (70%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +P+T + ++ +Q++L+ +EERP++I+ I+EARA+GDLSENAEY AAK Q E
Sbjct: 1 MSQTVPLTKESYEALQEDLKRLIKEERPKVIQDIAEARAHGDLSENAEYDAAKNRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL + + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ +
Sbjct: 61 GRILELGDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEELTYKIVGEDEADIKQCKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+ +ALIG +L D + V+ P G K YEI+++ +
Sbjct: 121 SCTSPVGKALIGHKLDDSVRVSVPAGVKEYEIIEIRY 157
>gi|309805184|ref|ZP_07699236.1| transcription elongation factor GreA [Lactobacillus iners LactinV
09V1-c]
gi|308165418|gb|EFO67649.1| transcription elongation factor GreA [Lactobacillus iners LactinV
09V1-c]
Length = 161
Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG
Sbjct: 61 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEVYTIVGSDESDPLSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK+ GD++S+N PGG I +V
Sbjct: 121 ISNDSPIAKALLGKKKGDVVSINTPGGLFEVTIDEVT 157
>gi|90418035|ref|ZP_01225947.1| transcription elongation factor greA [Aurantimonas manganoxydans
SI85-9A1]
gi|90337707|gb|EAS51358.1| transcription elongation factor greA [Aurantimonas manganoxydans
SI85-9A1]
Length = 157
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 103/156 (66%), Positives = 132/156 (84%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T+ G+D +++ELR RQQEERPRII AISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MEKVPMTNHGYDALREELRRRQQEERPRIIAAISEARAHGDLSENAEYHAAKESQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ELE++ RAEVID++ MSG I FGATV L+++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61 RISELEDLTARAEVIDVTKMSGATIKFGATVKLIDEDTEEEKTYQIVGDQEADVKKGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIARALIGK GD I V APGG ++YEIL+V W
Sbjct: 121 ISSPIARALIGKTDGDTIEVAAPGGARSYEILEVRW 156
>gi|21231292|ref|NP_637209.1| transcription elongation factor GreA [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66768656|ref|YP_243418.1| transcription elongation factor GreA [Xanthomonas campestris pv.
campestris str. 8004]
gi|188991526|ref|YP_001903536.1| transcription elongation factor GreA [Xanthomonas campestris pv.
campestris str. B100]
gi|25453015|sp|Q9L4D3|GREA_XANCP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|7228158|emb|CAB77041.1| putative transcriptional elongation factor [Xanthomonas campestris]
gi|21112945|gb|AAM41133.1| putative transcriptional elongation factor [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|66573988|gb|AAY49398.1| putative transcriptional elongation factor [Xanthomonas campestris
pv. campestris str. 8004]
gi|167733286|emb|CAP51485.1| transcriptional elongation factor [Xanthomonas campestris pv.
campestris]
Length = 158
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 77/154 (50%), Positives = 118/154 (76%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +
Sbjct: 4 PMTSKGAQRLREELDHLKSVKRPAVITAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63
Query: 66 LENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ AE+IDI+ + +G +I FGATV+L + + ++K YQIVGD EAD++ GL++ISS
Sbjct: 64 LEGELSHAEIIDITKLAAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGLIAISS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 124 PLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 157
>gi|92115199|ref|YP_575127.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM
3043]
gi|91798289|gb|ABE60428.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM
3043]
Length = 158
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G K+++EL + EERPR+I AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNKVPMTVAGEQKLREELEQLKGEERPRVINAIAEAREHGDLKENAEYHAAREQQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ ++VID++ + ++ FG TV L+ ++ ++ Y+IVG+ EAD+++G +
Sbjct: 61 RIQEIESKLSASQVIDVTKLPKTGKVIFGVTVDLINLHNDEEVRYRIVGEDEADIKAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGKE GD + V PGG+ YEI V +
Sbjct: 121 SVTSPIARALIGKEEGDTVLVRTPGGDVEYEIAGVEHL 158
>gi|293609985|ref|ZP_06692287.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828437|gb|EFF86800.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325123193|gb|ADY82716.1| transcription elongation factor, cleaves 3' nucleotide of paused
Mrna [Acinetobacter calcoaceticus PHEA-2]
Length = 158
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPEGKIALEKELQHLKSVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + ++VID+ + R+ FG TV++ ++ ++K Y+IVGD EAD + +
Sbjct: 61 RIQDIEGKLGASQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+ K GD + + P GE YEI+ V ++
Sbjct: 121 SVNSPIARGLLSKSEGDEVKIVTPQGEVEYEIVSVEYL 158
>gi|224417876|ref|ZP_03655882.1| transcription elongation factor GreA [Helicobacter canadensis MIT
98-5491]
Length = 159
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 63/152 (41%), Positives = 102/152 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ E
Sbjct: 3 PMTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINE 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++ A VID ST++ D+++FG+T++L + +S ++ Y IVG E++ GL+S SP
Sbjct: 63 LTQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ L+GK +GD +++ P G+ YEIL++ +
Sbjct: 123 LAKQLLGKVVGDEVTIQLPKGKVDYEILEICY 154
>gi|331007340|ref|ZP_08330536.1| Transcription elongation factor GreA [gamma proteobacterium
IMCC1989]
gi|330418856|gb|EGG93326.1| Transcription elongation factor GreA [gamma proteobacterium
IMCC1989]
Length = 153
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 74/153 (48%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G D +Q EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q+ EGR+ E+
Sbjct: 1 MTKRGADALQAELDDLKKVQRPRIVQAIAEAREHGDLKENAEYHAAREQQSFCEGRLQEI 60
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ +++IDI ++ R+ FG TVSL+ ++ +K YQIVGD EADV+ G +S++SP
Sbjct: 61 EGKLSNSQIIDIMSLPCTGRVIFGVTVSLLNLDTDEKVTYQIVGDDEADVKQGKISVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGK GD +++ P GE YEI V I
Sbjct: 121 IARGLIGKSEGDDVAIKTPSGEVEYEIEAVKHI 153
>gi|126215706|sp|Q4UJS8|GREA_RICFE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
Length = 162
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 80/157 (50%), Positives = 115/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF+K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 1 MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 61 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 157
>gi|325982668|ref|YP_004295070.1| transcription elongation factor GreA [Nitrosomonas sp. AL212]
gi|325532187|gb|ADZ26908.1| transcription elongation factor GreA [Nitrosomonas sp. AL212]
Length = 158
Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T G + +++EL + RP +I AI+EARA+GDLSENAEY AAKE Q EG
Sbjct: 1 MSTIPLTVAGAEALRKELHDMKTIHRPAVIAAIAEARAHGDLSENAEYDAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A++I+ + ++ D FGATV L + + + YQIVGD EA+++ G +
Sbjct: 61 RIAELESKLSSAQIINPALINADGACVFGATVELEDLQNSEVVTYQIVGDDEANIKDGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPI+RALIGK GDI V+AP G + YEIL V +I
Sbjct: 121 SISSPISRALIGKYAGDIAEVHAPSGIREYEILDVKYI 158
>gi|253700924|ref|YP_003022113.1| transcription elongation factor GreA [Geobacter sp. M21]
gi|251775774|gb|ACT18355.1| transcription elongation factor GreA [Geobacter sp. M21]
Length = 158
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 111/157 (70%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +P+T + ++ +Q++L+ +EERP++I+ I+EARA+GDLSENAEY AAK Q E
Sbjct: 1 MSQTVPLTKESYEALQEDLKRLIKEERPKVIQDIAEARAHGDLSENAEYDAAKNRQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL + + RA V+D+S + D++ FGATV++ + + ++ Y+IVG+ EAD++ +
Sbjct: 61 GRILELGDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEELTYKIVGEDEADIKLCKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+ +ALIG +L D + V+ P G K YEI+++ +
Sbjct: 121 SCTSPVGKALIGHKLDDSVRVSVPSGVKEYEIIEIRY 157
>gi|254787219|ref|YP_003074648.1| GreA/GreB family elongation factor [Teredinibacter turnerae T7901]
gi|237686435|gb|ACR13699.1| GreA/GreB family elongation factor [Teredinibacter turnerae T7901]
Length = 158
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++EL ++ +RP+I AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQKYPMTVEGEKALREELDHLKKVQRPKITAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VIDIS M G+++ FG TV L+ + ++ +Y+IVG+ EA+++ +
Sbjct: 61 RIQDIEAKLSNAQVIDISKMPVGEKVIFGVTVRLINVETDEEISYKIVGEDEANLKLNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARAL+GKE+GD+ V APGG+ YEI V I
Sbjct: 121 SVTSPIARALVGKEVGDVALVKAPGGDIEYEIDAVSHI 158
>gi|298292332|ref|YP_003694271.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
gi|296928843|gb|ADH89652.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
Length = 152
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 85/151 (56%), Positives = 119/151 (78%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL+ RQQ +R RII AISEARA+GDLSENAEY AAKE Q LNEGR+AEL
Sbjct: 1 MTPGGHAALEIELKQRQQVDRQRIISAISEARAHGDLSENAEYHAAKEQQALNEGRIAEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ ++RAE+ID++ +SGD + FGATV+L+++++ ++K++QIVGD EAD ++G +SISSP+
Sbjct: 61 EDKLSRAEIIDVAKLSGDTVMFGATVTLIDEDTEEEKSWQIVGDMEADAKAGRISISSPL 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK+ G + V P G ++YEI V +
Sbjct: 121 ARALIGKKRGTSVEVVTPKGARSYEIAAVRF 151
>gi|315038835|ref|YP_004032403.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
1112]
gi|325957274|ref|YP_004292686.1| transcription elongation factor GreA [Lactobacillus acidophilus
30SC]
gi|312276968|gb|ADQ59608.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
1112]
gi|325333839|gb|ADZ07747.1| transcription elongation factor GreA [Lactobacillus acidophilus
30SC]
gi|327184004|gb|AEA32451.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
1118]
Length = 158
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIQRIKVARSFGDLSENSEYDAAKDEQSHV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G
Sbjct: 61 EDRIAQVEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK+ G+ +S+ PGG+ I +V
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGQFDVVINKVE 157
>gi|302191231|ref|ZP_07267485.1| transcription elongation factor GreA [Lactobacillus iners AB-1]
gi|309806139|ref|ZP_07700158.1| transcription elongation factor GreA [Lactobacillus iners LactinV
03V1-b]
gi|309808375|ref|ZP_07702277.1| transcription elongation factor GreA [Lactobacillus iners LactinV
01V1-a]
gi|309810229|ref|ZP_07704074.1| transcription elongation factor GreA [Lactobacillus iners SPIN
2503V10-D]
gi|312871828|ref|ZP_07731916.1| transcription elongation factor GreA [Lactobacillus iners LEAF
3008A-a]
gi|312873001|ref|ZP_07733061.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2062A-h1]
gi|312875557|ref|ZP_07735558.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2053A-b]
gi|325912092|ref|ZP_08174490.1| transcription elongation factor GreA [Lactobacillus iners UPII
143-D]
gi|325912612|ref|ZP_08174995.1| transcription elongation factor GreA [Lactobacillus iners UPII
60-B]
gi|329920134|ref|ZP_08276965.1| transcription elongation factor GreA [Lactobacillus iners SPIN
1401G]
gi|308167494|gb|EFO69654.1| transcription elongation factor GreA [Lactobacillus iners LactinV
03V1-b]
gi|308168382|gb|EFO70498.1| transcription elongation factor GreA [Lactobacillus iners LactinV
01V1-a]
gi|308169501|gb|EFO71549.1| transcription elongation factor GreA [Lactobacillus iners SPIN
2503V10-D]
gi|311088811|gb|EFQ47254.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2053A-b]
gi|311091523|gb|EFQ49907.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2062A-h1]
gi|311092770|gb|EFQ51126.1| transcription elongation factor GreA [Lactobacillus iners LEAF
3008A-a]
gi|325476042|gb|EGC79210.1| transcription elongation factor GreA [Lactobacillus iners UPII
143-D]
gi|325478033|gb|EGC81162.1| transcription elongation factor GreA [Lactobacillus iners UPII
60-B]
gi|328936588|gb|EGG33032.1| transcription elongation factor GreA [Lactobacillus iners SPIN
1401G]
Length = 161
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG
Sbjct: 61 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEMYTIVGSDESDPLSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK+ GD++S+N PGG I +V
Sbjct: 121 ISNDSPIAKALLGKKKGDVVSINTPGGLFEVTIDEVT 157
>gi|51474029|ref|YP_067786.1| transcription elongation factor GreA [Rickettsia typhi str.
Wilmington]
gi|81389908|sp|Q68VQ2|GREA_RICTY RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|51460341|gb|AAU04304.1| transcription elongation factor GreA [Rickettsia typhi str.
Wilmington]
Length = 162
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 80/157 (50%), Positives = 114/157 (72%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T+KGF K++ EL+ + ER +I + I+EAR +GDLSENAEY+AA+E Q E
Sbjct: 1 MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE++ RAE+IDI +SGD I FGATV+L++ ++ ++ Y IVG+ EAD+ V
Sbjct: 61 GRIKELEDMTARAEIIDICKLSGDNIKFGATVTLIDDDTEEEVTYVIVGEYEADITKKRV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GD + V P G K+YE++ V +
Sbjct: 121 SIASPIAKALIGKSVGDFVEVITPKGLKSYEVVTVEY 157
>gi|84683984|ref|ZP_01011886.1| Transcription elongation factor greA [Maritimibacter alkaliphilus
HTCC2654]
gi|84667737|gb|EAQ14205.1| Transcription elongation factor greA [Rhodobacterales bacterium
HTCC2654]
Length = 156
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 85/157 (54%), Positives = 117/157 (74%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KI +T G+ + EL+ + ERP +I AISEAR +GDLSENAEY AA+E Q+ EG
Sbjct: 1 MEKILLTRAGYTALNDELKKLKSVERPAVIAAISEAREHGDLSENAEYHAAREKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+II AEVID + +SG I F ATV LV++++ ++K YQIVG+ EAD++ G ++
Sbjct: 61 RVKELESIIGLAEVIDPAKLSG-AIKFSATVKLVDEDTDEEKTYQIVGEPEADLEKGKLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARALIGKE GD + V PGGEK+YEIL++ +I
Sbjct: 120 IKSPLARALIGKEEGDSVEVRTPGGEKSYEILEIEYI 156
>gi|113969357|ref|YP_733150.1| transcription elongation factor GreA [Shewanella sp. MR-4]
gi|114046584|ref|YP_737134.1| transcription elongation factor GreA [Shewanella sp. MR-7]
gi|117919466|ref|YP_868658.1| transcription elongation factor GreA [Shewanella sp. ANA-3]
gi|113884041|gb|ABI38093.1| transcription elongation factor GreA [Shewanella sp. MR-4]
gi|113888026|gb|ABI42077.1| transcription elongation factor GreA [Shewanella sp. MR-7]
gi|117611798|gb|ABK47252.1| transcription elongation factor GreA [Shewanella sp. ANA-3]
Length = 158
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T G +++++EL + E RP+I +AI+ AR GDL ENAEY AA+E Q + E
Sbjct: 1 MTKVPMTVVGAEQLRKELDMLKFERRPKITEAIASARELGDLKENAEYHAAREEQGICEA 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++ M+ + RI FG TV+++ ++ + Y+IVGD EA+++ L+
Sbjct: 61 RIRDIEGKLSNAQIIDVTKMANNGRIIFGTTVTILNLDTDAEVTYRIVGDDEANIKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK GD +S+ PGG YEI+ V +I
Sbjct: 121 SVNSPIARGLVGKNEGDEVSIATPGGLTDYEIISVQYI 158
>gi|302879460|ref|YP_003848024.1| transcription elongation factor GreA [Gallionella capsiferriformans
ES-2]
gi|302582249|gb|ADL56260.1| transcription elongation factor GreA [Gallionella capsiferriformans
ES-2]
Length = 158
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 87/158 (55%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T G DK++QEL + ERP +I AISEARA GDLSENAEY+AAK+ Q EG
Sbjct: 1 MIKIPLTLVGADKMRQELHKLKTVERPWVINAISEARAQGDLSENAEYEAAKDRQGFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE + A++ID T++ + R FG+TV L E NSGD YQIVGD EAD+++ +
Sbjct: 61 RIIELEGKLGSAQIIDPKTLNANGRCVFGSTVILEEMNSGDVVTYQIVGDDEADIKARKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIARALIGK GD+ V PGG + YE+++V +I
Sbjct: 121 SISSPIARALIGKSSGDVAEVKTPGGIREYELIEVQYI 158
>gi|114704985|ref|ZP_01437893.1| transcription elongation factor (transcript cleavage factor)
protein [Fulvimarina pelagi HTCC2506]
gi|114539770|gb|EAU42890.1| transcription elongation factor (transcript cleavage factor)
protein [Fulvimarina pelagi HTCC2506]
Length = 157
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 104/156 (66%), Positives = 137/156 (87%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T++GF+ +++ELR RQQEERPRII+AISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1 MQKVPMTTRGFETLKEELRRRQQEERPRIIQAISEARAHGDLSENAEYHAAKEAQSLNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ELE++ RAEVID+S MSGD++ FGATV LV++ + +++ +QIVGDQEADV+SG +S
Sbjct: 61 RISELEDVTARAEVIDVSKMSGDKVMFGATVKLVDEETEEERLFQIVGDQEADVKSGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ISSPIARALIGKE GD + V APGG ++YE+L+VLW
Sbjct: 121 ISSPIARALIGKEEGDTVEVAAPGGARSYEVLEVLW 156
>gi|42519498|ref|NP_965428.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC
533]
gi|116630017|ref|YP_815189.1| transcription elongation factor [Lactobacillus gasseri ATCC 33323]
gi|227889550|ref|ZP_04007355.1| elongation factor GreA [Lactobacillus johnsonii ATCC 33200]
gi|238853796|ref|ZP_04644162.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4]
gi|282851368|ref|ZP_06260733.1| transcription elongation factor GreA [Lactobacillus gasseri 224-1]
gi|300361220|ref|ZP_07057397.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03]
gi|311110352|ref|ZP_07711749.1| transcription elongation factor GreA [Lactobacillus gasseri MV-22]
gi|41583786|gb|AAS09394.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC
533]
gi|116095599|gb|ABJ60751.1| transcription elongation factor GreA [Lactobacillus gasseri ATCC
33323]
gi|227850028|gb|EEJ60114.1| elongation factor GreA [Lactobacillus johnsonii ATCC 33200]
gi|238833605|gb|EEQ25876.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4]
gi|282557336|gb|EFB62933.1| transcription elongation factor GreA [Lactobacillus gasseri 224-1]
gi|300353839|gb|EFJ69710.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03]
gi|311065506|gb|EFQ45846.1| transcription elongation factor GreA [Lactobacillus gasseri MV-22]
gi|329667737|gb|AEB93685.1| transcription elongation factor GreA [Lactobacillus johnsonii DPC
6026]
Length = 160
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T++G +K+Q+EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MAEKVYPMTAEGKEKLQKELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ++E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G
Sbjct: 61 EQRIVQIEQMLKYAQVVDADSVDPNEVSIGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK+ G+ +++N PGG I V
Sbjct: 121 ISNDSPIAQALLGKKKGEKVTINTPGGTFDVTINDVK 157
>gi|295688363|ref|YP_003592056.1| GreA/Greb family elongation factor [Caulobacter segnis ATCC 21756]
gi|295430266|gb|ADG09438.1| GreA/GreB family elongation factor [Caulobacter segnis ATCC 21756]
Length = 152
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 81/152 (53%), Positives = 120/152 (78%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ + +EL+ + ERP +I AI+EAR++GDLSENAEY AAKE Q EG++AE+
Sbjct: 1 MTVGGYQTLDEELKRLKTIERPSVIAAIAEARSHGDLSENAEYHAAKERQGWIEGQIAEI 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ I RA+VID+S +SG ++ FGATVS++++++ ++ YQIVGD EADV+SG +S+SSP+
Sbjct: 61 EDKIARAQVIDVSKLSGKQVKFGATVSVIDEDTEEEARYQIVGDHEADVKSGRISLSSPL 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+RA+IGKE+G+++ VN PGG K YEI +V W+
Sbjct: 121 SRAMIGKEVGEVVEVNTPGGVKAYEITKVEWL 152
>gi|225023997|ref|ZP_03713189.1| hypothetical protein EIKCOROL_00864 [Eikenella corrodens ATCC
23834]
gi|224943022|gb|EEG24231.1| hypothetical protein EIKCOROL_00864 [Eikenella corrodens ATCC
23834]
Length = 162
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 82/159 (51%), Positives = 116/159 (72%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ KIP+T +G + ++QEL+ + ERP II+AI+EAR +GDLSENAEY+AAKE Q E
Sbjct: 4 IMQKIPLTVRGAELLKQELQHLKSVERPAIIEAIAEARTHGDLSENAEYEAAKEKQGFIE 63
Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR++ELEN ++ A +ID + + +I FG TV L + + + YQIVGD EAD++
Sbjct: 64 GRISELENKLSAAHIIDPTEIHAEGKIVFGCTVVLEDLENETQVRYQIVGDDEADIKDNK 123
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SISSPI+RALIGKE GD+ V APGG + YE+++VL+I
Sbjct: 124 ISISSPISRALIGKEEGDVAEVQAPGGIREYEVIEVLYI 162
>gi|93005658|ref|YP_580095.1| GreA/GreB family elongation factor [Psychrobacter cryohalolentis
K5]
gi|123264676|sp|Q1QCJ2|GREA_PSYCK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|92393336|gb|ABE74611.1| GreA/GreB family elongation factor [Psychrobacter cryohalolentis
K5]
Length = 158
Score = 171 bits (435), Expect = 2e-41, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G ++ EL+ + +RPRI +I+EAR +GDL ENAEY AA+E Q E
Sbjct: 1 MQRYPMTPQGHAALEAELKQLKSIDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEA 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A+VID +T+ D R+ FG +V + ++ ++K Y+IVGD EAD ++G +
Sbjct: 61 RIRDIEAKLGGAQVIDPTTLPKDGRVIFGVSVVIENMDTEEEKQYKIVGDDEADFKAGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIAR LIGK GD + P G YEI++V++
Sbjct: 121 SVNSPIARGLIGKSEGDEARIETPKGVVEYEIMKVIY 157
>gi|86151410|ref|ZP_01069625.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 260.94]
gi|86153776|ref|ZP_01071979.1| transcription elongation factor greA [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|121612714|ref|YP_001000001.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 81-176]
gi|167004957|ref|ZP_02270715.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 81-176]
gi|315123863|ref|YP_004065867.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
gi|166200654|sp|A1VY10|GREA_CAMJJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|85841757|gb|EAQ59004.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 260.94]
gi|85842737|gb|EAQ59949.1| transcription elongation factor greA [Campylobacter jejuni subsp.
jejuni HB93-13]
gi|87250181|gb|EAQ73139.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 81-176]
gi|315017585|gb|ADT65678.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni ICDCCJ07001]
Length = 161
Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats.
Identities = 64/156 (41%), Positives = 103/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E
Sbjct: 1 MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +S
Sbjct: 61 RIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIIDLDTEKESKYTLVGICEGDLDKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIA+A++GK+ GD V P GE +EIL + +
Sbjct: 121 IASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156
>gi|254491388|ref|ZP_05104567.1| transcription elongation factor GreA subfamily [Methylophaga
thiooxidans DMS010]
gi|224462866|gb|EEF79136.1| transcription elongation factor GreA subfamily [Methylophaga
thiooxydans DMS010]
Length = 158
Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats.
Identities = 78/154 (50%), Positives = 115/154 (74%), Gaps = 1/154 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+P+TS+G + ++ EL+ + RP ++ AISEARA+GDL ENAEY AAKE Q+ EGR+
Sbjct: 3 VPITSRGAEALKHELKELKSVARPTVVAAISEARAHGDLKENAEYHAAKEQQSFIEGRIQ 62
Query: 65 ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE +++ A+VID +++ D R+ FG TVSL+ ++ ++K YQIVGD E+D++ +S+S
Sbjct: 63 ELEGVLSNAQVIDPASLPQDGRVVFGVTVSLLNIDTDEEKAYQIVGDYESDIKLNRISVS 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALIGKE+ DI +V APGG YEI+++ +
Sbjct: 123 SPIARALIGKEIDDIATVQAPGGNIEYEIIEISY 156
>gi|171059502|ref|YP_001791851.1| transcription elongation factor GreA [Leptothrix cholodnii SP-6]
gi|170776947|gb|ACB35086.1| transcription elongation factor GreA [Leptothrix cholodnii SP-6]
Length = 158
Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G + +++EL+ + ERP +I AI+EARA GDLSENAEY+AAK+ Q EG
Sbjct: 1 MATIPLTKRGAELLKEELQRLKTIERPWVINAIAEARAQGDLSENAEYEAAKDKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A+VID + + G R+ FGATV L E+ SGD YQIVG+ EAD++ GLV
Sbjct: 61 RILDVEGKLAIAQVIDPAVLDAGGRVVFGATVDLEEEESGDAVTYQIVGEDEADLKKGLV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARALIGKE GD+ V APGG K YE+++V ++
Sbjct: 121 SVGSPIARALIGKEAGDVAEVQAPGGVKRYEVVEVRYV 158
>gi|119504338|ref|ZP_01626418.1| GreA/GreB family elongation factor [marine gamma proteobacterium
HTCC2080]
gi|119459846|gb|EAW40941.1| GreA/GreB family elongation factor [marine gamma proteobacterium
HTCC2080]
Length = 158
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G ++ EL ++E+RPRII+AI+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MNKVPMTVAGEQSLRDELDRLKREDRPRIIQAIAEAREHGDLKENAEYHAAREQQSFAEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E+ ++ A++ID+S + ++ FG TV L+ + + Y+IVG+ E+DV++ L+
Sbjct: 61 RIQDIEHKLSHAQIIDVSAIPNTGKVIFGTTVDLINTENDNPVTYRIVGEDESDVKANLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARAL+GK GD + V AP G+ YEI +V I
Sbjct: 121 SVSSPIARALVGKSEGDEVVVKAPSGDIYYEIERVHHI 158
>gi|309803130|ref|ZP_07697227.1| transcription elongation factor GreA [Lactobacillus iners LactinV
11V1-d]
gi|312874272|ref|ZP_07734306.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2052A-d]
gi|308164638|gb|EFO66888.1| transcription elongation factor GreA [Lactobacillus iners LactinV
11V1-d]
gi|311090342|gb|EFQ48752.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2052A-d]
Length = 161
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG
Sbjct: 61 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEIGTDDSEMYTIVGSDESDPLSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK+ GD++S+N PGG I +V
Sbjct: 121 ISNDSPIAKALLGKKKGDVVSINTPGGLFEVTIDEVT 157
>gi|119774088|ref|YP_926828.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
gi|119766588|gb|ABL99158.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
Length = 158
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G +++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E
Sbjct: 1 MNKVPMTVVGAEQLRKELDILKFDRRPKITEAIAAARELGDLKENAEYHAAREEQGICEA 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++ M+ + RI FGATV+++ ++ + Y+IVGD EA+++ L+
Sbjct: 61 RIRDIEGKLSNAQIIDVTKMANNGRIIFGATVTILNLDTDAEVTYRIVGDDEANIKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK LGD +++ P G YE+++V +I
Sbjct: 121 SVNSPIARGLVGKNLGDEVNITTPAGVTAYEVVEVQYI 158
>gi|313141419|ref|ZP_07803612.1| transcription elongation factor greA [Helicobacter canadensis MIT
98-5491]
gi|313130450|gb|EFR48067.1| transcription elongation factor greA [Helicobacter canadensis MIT
98-5491]
Length = 163
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 63/152 (41%), Positives = 102/152 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ E
Sbjct: 7 PMTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINE 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++ A VID ST++ D+++FG+T++L + +S ++ Y IVG E++ GL+S SP
Sbjct: 67 LTQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSP 126
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ L+GK +GD +++ P G+ YEIL++ +
Sbjct: 127 LAKQLLGKVVGDEVTIQLPKGKVDYEILEICY 158
>gi|78485225|ref|YP_391150.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2]
gi|123755246|sp|Q31H97|GREA_THICR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|78363511|gb|ABB41476.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2]
Length = 158
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G D +Q+EL+ ++ ERP + AI+EAR +GDL ENAEY AA+E Q L E
Sbjct: 1 MQRHPMTKEGADALQEELQHLKKVERPAVSNAIAEAREHGDLKENAEYHAAREQQGLMEA 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E+++ ++ID++ + ++ FG+TV+++ ++ ++ Y+IVG++EAD++ +
Sbjct: 61 RIKQIESLLGSVQIIDVTKLNPNGKVVFGSTVTILNVDTEEEVTYKIVGEEEADIKHNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALI KE G+ I+V AP G YEI+++ ++
Sbjct: 121 SVNSPIARALIAKEEGEEITVKAPSGNIEYEIVEIQYV 158
>gi|119469583|ref|ZP_01612487.1| transcription elongation factor greA [Alteromonadales bacterium
TW-7]
gi|119447118|gb|EAW28388.1| transcription elongation factor greA [Alteromonadales bacterium
TW-7]
Length = 158
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G D +++EL + RP+II I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQTIPMTVRGADLLRKELNELKTVTRPKIIADIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ ++ID++ M ++ FG TV++V + + YQIVGD EAD+++ L+
Sbjct: 61 RIQEIEAKLSNVQIIDVTKMPNTGKVIFGTTVTIVNVETDAEVKYQIVGDDEADIKNNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK++ D +++ P G+ YEI++V ++
Sbjct: 121 SVNSPIARGLIGKQMDDAVTIKTPKGDVEYEIIEVEYL 158
>gi|71065373|ref|YP_264100.1| transcription elongation factor GreA [Psychrobacter arcticus 273-4]
gi|123775615|sp|Q4FTJ2|GREA_PSYA2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71038358|gb|AAZ18666.1| GreA transcription elongation factor [Psychrobacter arcticus 273-4]
Length = 158
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G ++ EL+ + +RPRI +I+EAR +GDL ENAEY AA+E Q E
Sbjct: 1 MQRYPMTPQGHAALEAELKQLKSIDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEA 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A++ID +T+ D R+ FG +V + ++ ++K Y+IVGD EAD ++G +
Sbjct: 61 RIRDIEAKLGGAQIIDPATLPKDGRVIFGVSVVIENMDTEEEKQYKIVGDDEADFKAGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIAR LIGK GD + P G YEI++V++
Sbjct: 121 SVNSPIARGLIGKSEGDEARIETPKGVVEYEIMKVIY 157
>gi|89095224|ref|ZP_01168147.1| transcription elongation factor greA (transcript cleavage factor)
[Oceanospirillum sp. MED92]
gi|89080521|gb|EAR59770.1| transcription elongation factor greA (transcript cleavage factor)
[Oceanospirillum sp. MED92]
Length = 153
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 68/153 (44%), Positives = 105/153 (68%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G +++EL + +RPR+I I+EAR +GDL ENAEY AA+E Q EGR+ EL
Sbjct: 1 MTAAGEKALREELDQLKTVDRPRVIADIAEAREHGDLKENAEYHAAREQQGFIEGRIQEL 60
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ +VID++++ ++ FG TV+++ ++ + K YQIVGD EAD++ +S++SP
Sbjct: 61 EGKLSNCQVIDVTSIPHTGKVIFGTTVTIINLDTDETKTYQIVGDDEADIKVNKISVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR L+GKE GDI+++ PGG YEI +V I
Sbjct: 121 IARGLVGKEEGDIVNIQTPGGAAEYEIDEVAHI 153
>gi|237748685|ref|ZP_04579165.1| transcription elongation factor protein [Oxalobacter formigenes
OXCC13]
gi|229380047|gb|EEO30138.1| transcription elongation factor protein [Oxalobacter formigenes
OXCC13]
Length = 158
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 118/158 (74%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IPVT +G ++ EL+ + ++R +I AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MSSIPVTVRGAQMLRDELQRLKTKDRYEVIAAIAEARSHGDLSENAEYDAAKERQAFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE ++ A++ID +T++ + +I F ATVS+ + +GD+ YQIVG+ EAD++ +
Sbjct: 61 RIAELEGKLSSAQIIDPTTLNTNGKIVFAATVSVEDLETGDRVTYQIVGNDEADLKEFKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI+SP+ARALIG+E GD++ VNAP G + YEIL+V++I
Sbjct: 121 SITSPMARALIGREEGDVVEVNAPAGVREYEILEVMFI 158
>gi|86149591|ref|ZP_01067821.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|283955709|ref|ZP_06373200.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
1336]
gi|85839859|gb|EAQ57118.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni CF93-6]
gi|283792664|gb|EFC31442.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
1336]
Length = 161
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 64/156 (41%), Positives = 103/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E
Sbjct: 1 MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +S
Sbjct: 61 RIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGDLDKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIA+A++GK+ GD V P GE +EIL + +
Sbjct: 121 IASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156
>gi|261400869|ref|ZP_05986994.1| transcription elongation factor GreA [Neisseria lactamica ATCC
23970]
gi|313668543|ref|YP_004048827.1| transcription elongation factor [Neisseria lactamica ST-640]
gi|269209345|gb|EEZ75800.1| transcription elongation factor GreA [Neisseria lactamica ATCC
23970]
gi|309379687|emb|CBX21676.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313006005|emb|CBN87464.1| transcription elongation factor [Neisseria lactamica 020-06]
Length = 158
Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 61 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVQYI 158
>gi|121635119|ref|YP_975364.1| transcription elongation factor [Neisseria meningitidis FAM18]
gi|218768434|ref|YP_002342946.1| transcription elongation factor GreA [Neisseria meningitidis Z2491]
gi|254805211|ref|YP_003083432.1| Transcription elongation factor [Neisseria meningitidis alpha14]
gi|261377466|ref|ZP_05982039.1| transcription elongation factor GreA [Neisseria cinerea ATCC 14685]
gi|296314208|ref|ZP_06864149.1| transcription elongation factor GreA [Neisseria polysaccharea ATCC
43768]
gi|25453011|sp|Q9JTT4|GREA_NEIMA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|120866825|emb|CAM10583.1| transcription elongation factor [Neisseria meningitidis FAM18]
gi|121052442|emb|CAM08778.1| transcription elongation factor [Neisseria meningitidis Z2491]
gi|254668753|emb|CBA06621.1| Transcription elongation factor [Neisseria meningitidis alpha14]
gi|254672956|emb|CBA07383.1| Transcription elongation factor [Neisseria meningitidis alpha275]
gi|261392308|emb|CAX49834.1| transcription elongation factor GreA (transcript cleavage factor
GreA) [Neisseria meningitidis 8013]
gi|269146195|gb|EEZ72613.1| transcription elongation factor GreA [Neisseria cinerea ATCC 14685]
gi|296839104|gb|EFH23042.1| transcription elongation factor GreA [Neisseria polysaccharea ATCC
43768]
gi|308389534|gb|ADO31854.1| transcription elongation factor [Neisseria meningitidis alpha710]
gi|319410678|emb|CBY91057.1| transcription elongation factor GreA (transcript cleavage factor
GreA) [Neisseria meningitidis WUE 2594]
gi|325128511|gb|EGC51389.1| transcription elongation factor greA [Neisseria meningitidis N1568]
gi|325134589|gb|EGC57233.1| transcription elongation factor greA [Neisseria meningitidis
M13399]
gi|325138430|gb|EGC60996.1| transcription elongation factor greA [Neisseria meningitidis
ES14902]
gi|325144750|gb|EGC67045.1| transcription elongation factor greA [Neisseria meningitidis
M01-240013]
gi|325198564|gb|ADY94020.1| transcription elongation factor greA [Neisseria meningitidis G2136]
gi|325201872|gb|ADY97326.1| transcription elongation factor greA [Neisseria meningitidis
M01-240149]
gi|325204417|gb|ADY99870.1| transcription elongation factor greA [Neisseria meningitidis
M01-240355]
gi|325205816|gb|ADZ01269.1| transcription elongation factor greA [Neisseria meningitidis
M04-240196]
gi|325208376|gb|ADZ03828.1| transcription elongation factor greA [Neisseria meningitidis
NZ-05/33]
Length = 158
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 61 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158
>gi|319778418|ref|YP_004129331.1| Transcription elongation factor GreA [Taylorella equigenitalis
MCE9]
gi|317108442|gb|ADU91188.1| Transcription elongation factor GreA [Taylorella equigenitalis
MCE9]
Length = 158
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 80/158 (50%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +P+T G ++ +EL+ + ERP +I+AI+EARA GDLSENAEY AA+E Q E
Sbjct: 1 MSTLPLTKAGSIRLTEELQKLKTVERPAVIQAIAEARAQGDLSENAEYDAARERQGFIEA 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE +++ +++I+ ST+ GD+I FGATV L + +SG+ YQIVGD EAD++ +
Sbjct: 61 RIKELEGVLSNSQIIEPSTLEAGDKIVFGATVELEDLDSGELVKYQIVGDAEADIKLNTI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSP+AR LIGK GD I ++ P GEK YEIL V +I
Sbjct: 121 SISSPVARGLIGKHEGDTIKISVPSGEKEYEILSVEYI 158
>gi|59801297|ref|YP_208009.1| hypothetical protein NGO0899 [Neisseria gonorrhoeae FA 1090]
gi|239998864|ref|ZP_04718788.1| transcription elongation factor GreA [Neisseria gonorrhoeae 35/02]
gi|240016658|ref|ZP_04723198.1| transcription elongation factor GreA [Neisseria gonorrhoeae FA6140]
gi|240112789|ref|ZP_04727279.1| transcription elongation factor GreA [Neisseria gonorrhoeae MS11]
gi|240123392|ref|ZP_04736348.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID332]
gi|240128094|ref|ZP_04740755.1| transcription elongation factor GreA [Neisseria gonorrhoeae
SK-93-1035]
gi|254493651|ref|ZP_05106822.1| transcription elongation factor [Neisseria gonorrhoeae 1291]
gi|260440648|ref|ZP_05794464.1| transcription elongation factor GreA [Neisseria gonorrhoeae DGI2]
gi|268594706|ref|ZP_06128873.1| transcription elongation factor [Neisseria gonorrhoeae 35/02]
gi|268598857|ref|ZP_06133024.1| transcription elongation factor [Neisseria gonorrhoeae MS11]
gi|268682016|ref|ZP_06148878.1| transcription elongation factor [Neisseria gonorrhoeae PID332]
gi|268686483|ref|ZP_06153345.1| transcription elongation factor [Neisseria gonorrhoeae SK-93-1035]
gi|59718192|gb|AAW89597.1| putative transcription elongation factor [Neisseria gonorrhoeae FA
1090]
gi|226512691|gb|EEH62036.1| transcription elongation factor [Neisseria gonorrhoeae 1291]
gi|268548095|gb|EEZ43513.1| transcription elongation factor [Neisseria gonorrhoeae 35/02]
gi|268582988|gb|EEZ47664.1| transcription elongation factor [Neisseria gonorrhoeae MS11]
gi|268622300|gb|EEZ54700.1| transcription elongation factor [Neisseria gonorrhoeae PID332]
gi|268626767|gb|EEZ59167.1| transcription elongation factor [Neisseria gonorrhoeae SK-93-1035]
Length = 158
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 61 RISELEHKLSVAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158
>gi|120556264|ref|YP_960615.1| transcription elongation factor GreA [Marinobacter aquaeolei VT8]
gi|120326113|gb|ABM20428.1| transcription elongation factor GreA [Marinobacter aquaeolei VT8]
Length = 159
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 75/159 (47%), Positives = 116/159 (72%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D++P+T G ++++EL+ + E+RPR+I AI++AR +GDL ENAEY AA+E Q+ E
Sbjct: 1 MADRVPMTKTGEARLREELKKLKSEDRPRVIAAIADAREHGDLKENAEYHAAREQQSFIE 60
Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E ++ A+VID++TM + ++ FG TV LV + ++ YQIVG+ EAD+++G
Sbjct: 61 GRIQEIEGKLSVAQVIDVTTMENTGKVIFGTTVHLVNMETDEEVTYQIVGEDEADIKAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S+SSPIARALIGK GD++++ P G YEI +V +I
Sbjct: 121 LSVSSPIARALIGKNEGDVVAIRIPSGTVEYEISEVEYI 159
>gi|260576249|ref|ZP_05844241.1| transcription elongation factor GreA [Rhodobacter sp. SW2]
gi|259021517|gb|EEW24821.1| transcription elongation factor GreA [Rhodobacter sp. SW2]
Length = 151
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 79/152 (51%), Positives = 116/152 (76%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T GF + EL+ + ERP +I+AI+EARA+GDLSENAEY AA+E Q+ EGR+ EL
Sbjct: 1 MTRGGFVALDDELKLLKSVERPAVIRAIAEARAHGDLSENAEYHAAREKQSFIEGRIKEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E II+RAEVID + +SG I FGATV+LV++++ +++ YQIVG+ EA+++ G ++I SP+
Sbjct: 61 EAIISRAEVIDPAKLSG-AIKFGATVTLVDEDTNEERTYQIVGEPEANIEGGFLNIRSPL 119
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARALIGK GD + V PGG+++YE+L + ++
Sbjct: 120 ARALIGKAEGDSVDVKTPGGQRSYEVLSIRFV 151
>gi|269103415|ref|ZP_06156112.1| transcription elongation factor GreA [Photobacterium damselae
subsp. damselae CIP 102761]
gi|268163313|gb|EEZ41809.1| transcription elongation factor GreA [Photobacterium damselae
subsp. damselae CIP 102761]
Length = 157
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T +G K++QEL + RP I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MDKVPMTVRGEQKLRQELEVLMK-RRPLISQAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG TV+L+ ++ ++ Y+IVGD EAD + L+
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMPNSGKVIFGTTVTLLNLDTDEETTYRIVGDDEADFKQNLI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD + + PGG K +EI++V +I
Sbjct: 120 SVNSPIARGLIGKMEGDEVQIATPGGTKEFEIVEVQYI 157
>gi|319942670|ref|ZP_08016977.1| transcription elongation factor [Sutterella wadsworthensis 3_1_45B]
gi|319803753|gb|EFW00688.1| transcription elongation factor [Sutterella wadsworthensis 3_1_45B]
Length = 158
Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats.
Identities = 79/157 (50%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T+ G K++ EL + ++ RP ++ AI+EAR GDLSENAEY AA+E Q EG
Sbjct: 1 MNRIPITAAGAAKLKAELDYLKKTARPNVVAAIAEAREKGDLSENAEYDAAREEQGHIEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE I +VID T+ +GDRI FGATV+L ++ YQIVGD EAD++ L+
Sbjct: 61 RIAELEGKIPALQVIDPKTVAAGDRIVFGATVTLYDEEEDSNVTYQIVGDDEADIKKNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+SSPIARALIGK GD + AP G+ T+E+ V +
Sbjct: 121 SVSSPIARALIGKSEGDTVVFMAPKGKVTFEVETVEY 157
>gi|28198317|ref|NP_778631.1| transcription elongation factor GreA [Xylella fastidiosa Temecula1]
gi|182680956|ref|YP_001829116.1| transcription elongation factor GreA [Xylella fastidiosa M23]
gi|32129572|sp|Q87EB7|GREA_XYLFT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238691084|sp|B2I844|GREA_XYLF2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|28056387|gb|AAO28280.1| transcriptional elongation factor [Xylella fastidiosa Temecula1]
gi|182631066|gb|ACB91842.1| transcription elongation factor GreA [Xylella fastidiosa M23]
Length = 158
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ +
Sbjct: 4 PMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63
Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ AEVID++ ++ G +I FGATV+L + + ++ YQIVGD EAD++ GLV+ISS
Sbjct: 64 LEGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDEESRYQIVGDLEADIKQGLVAISS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 124 PVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157
>gi|300113257|ref|YP_003759832.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113]
gi|299539194|gb|ADJ27511.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113]
Length = 158
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 75/157 (47%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T KG ++++ELR + RP+++ AI+EARA+GDL ENAEY AA+E Q EG
Sbjct: 1 MNKVPLTEKGAQQLREELRELKTVVRPKVVAAIAEARAHGDLKENAEYHAAREEQGFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +LE+ + A++ID+S + D R+ FG TV L+ + +K +YQIVGD EA+++ +
Sbjct: 61 RIRDLEHQLAHAQIIDVSKLQKDGRVVFGVTVDLINIETDEKASYQIVGDLEANIKENKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIARALIGK GD I V AP G YEI + +
Sbjct: 121 SINSPIARALIGKREGDEIQVQAPSGVILYEIAAIGY 157
>gi|108763574|ref|YP_631602.1| transcription elongation factor GreA [Myxococcus xanthus DK 1622]
gi|108467454|gb|ABF92639.1| transcription elongation factor GreA [Myxococcus xanthus DK 1622]
Length = 172
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 71/156 (45%), Positives = 108/156 (69%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
D IP+T G K+++EL+ Q ER +I + I ARA+GDL ENAEY AAKE Q+ EG
Sbjct: 5 SDNIPMTPSGLRKLKEELKHLQSVERGKISREIEVARAHGDLRENAEYHAAKEKQSHIEG 64
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + I RAEVID + GD++ FGATV L++ + +Y++VG+ EAD++ ++
Sbjct: 65 RILTLNDWIARAEVIDPKKLGGDKVIFGATVDLLDTETDKPVSYRLVGEIEADLKKRWIA 124
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++SP+ARALIGK++GDI +V +PGG + E+ ++ +
Sbjct: 125 VTSPVARALIGKKVGDIATVQSPGGVRELEVQEIRF 160
>gi|254450273|ref|ZP_05063710.1| transcription elongation factor GreA [Octadecabacter antarcticus
238]
gi|198264679|gb|EDY88949.1| transcription elongation factor GreA [Octadecabacter antarcticus
238]
Length = 156
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 82/156 (52%), Positives = 117/156 (75%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DKIP+T GF+K+ EL+ + ERP II+AIS+AR +GDLSENAEY +AKE Q+ EG
Sbjct: 1 MDKIPLTRAGFNKLDAELKNLKSVERPAIIRAISDAREHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ A+VID+S +SG + FGA V+L+++ + + YQIVG+ EAD++ G ++
Sbjct: 61 RVKELEGAISLADVIDVSKLSG-TVKFGAHVTLIDEATDKETTYQIVGEYEADIEQGRLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIARALIGK+ GD + V PGG K+YEIL +++
Sbjct: 120 MKSPIARALIGKDEGDSVEVRTPGGVKSYEILTIVF 155
>gi|300310712|ref|YP_003774804.1| transcription elongation factor protein [Herbaspirillum seropedicae
SmR1]
gi|124483342|emb|CAM32544.1| Transcription elongation factor protein [Herbaspirillum
seropedicae]
gi|300073497|gb|ADJ62896.1| transcription elongation factor protein [Herbaspirillum seropedicae
SmR1]
Length = 158
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +P+T +G + +++EL + ++RP +I AI+EARA GDLSENAEY++AKE Q EG
Sbjct: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE + A+++D + ++ R+ F +TV L +SG+K YQIVG EAD++ V
Sbjct: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGK GD+++V AP G K YEIL+V ++
Sbjct: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158
>gi|262369443|ref|ZP_06062771.1| transcription elongation factor [Acinetobacter johnsonii SH046]
gi|262315511|gb|EEY96550.1| transcription elongation factor [Acinetobacter johnsonii SH046]
Length = 158
Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL + ERPRII AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPQGKLALEKELHQLKSIERPRIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A+VID+ + R+ FG TV++ ++ ++K Y IVGD EAD + +
Sbjct: 61 RVQDIEGKLGAAQVIDVKELEQNGRVVFGVTVTIENLDTEEQKTYMIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK GD + P GE YEI++V +I
Sbjct: 121 SVNSPIARGLLGKSEGDEAKIQTPQGEVEYEIVKVAYI 158
>gi|330447386|ref|ZP_08311035.1| transcription elongation factor GreA [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328491577|dbj|GAA05532.1| transcription elongation factor GreA [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 157
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 112/158 (70%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K++ EL + RP I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGEQKLRSELDVLLK-RRPLISQAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A++ID++TM ++ FG T++L++ ++ + Y IVGD EAD++ L+
Sbjct: 60 QIRDIEYKLSVAQIIDVTTMPNTGKVIFGTTITLLDLDTDKEVTYCIVGDDEADIKQNLI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD ++++ PGG+K +EIL+V +I
Sbjct: 120 SVNSPIARGLIGKMEGDEVAISTPGGQKEFEILEVQYI 157
>gi|307824612|ref|ZP_07654836.1| GreA/GreB family elongation factor [Methylobacter tundripaludum
SV96]
gi|307734266|gb|EFO05119.1| GreA/GreB family elongation factor [Methylobacter tundripaludum
SV96]
Length = 158
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T KG +K++ EL + RPRI+ +I+ ARA+GDL ENAEY AAKE Q+ EG
Sbjct: 1 MNKVPLTVKGAEKLRAELEELKSVVRPRIVASIATARAHGDLKENAEYHAAKEQQSFAEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++E+E ++ A++IDI+ + + ++ FGATV + + S K YQIVG+ EA+++ G +
Sbjct: 61 RISEIEGKLSNAQIIDITKVDANGKVVFGATVEIEDIESERKVTYQIVGEDEANIKEGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SPIARALIGKE+ D+++V APGG YEI+ + +I
Sbjct: 121 SIGSPIARALIGKEVEDVVTVKAPGGNVDYEIISIEYI 158
>gi|153874961|ref|ZP_02002967.1| Prokaryotic transcription elongation factor GreA [Beggiatoa sp. PS]
gi|152068576|gb|EDN67034.1| Prokaryotic transcription elongation factor GreA [Beggiatoa sp. PS]
Length = 157
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 83/156 (53%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T++G K++ EL + ERP++I+AI+EARA GDL ENAEY AA+E Q+ EGR+
Sbjct: 2 KSPMTTQGAQKLRDELHHLKTVERPKVIQAIAEARALGDLKENAEYHAAREQQSFIEGRI 61
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
ELE AE+IDI+ ++ + ++ FGATV+L+ + ++ YQIVGD EAD+++ L+SI
Sbjct: 62 MELETKFASAEIIDITKINANGKVVFGATVNLMNVETEEEVTYQIVGDDEADIKAHLISI 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSPIARALI KE G+I V APGG+K YEIL+V +I
Sbjct: 122 SSPIARALIKKEEGEIAVVQAPGGKKEYEILEVKYI 157
>gi|297569319|ref|YP_003690663.1| GreA/GreB family elongation factor [Desulfurivibrio alkaliphilus
AHT2]
gi|296925234|gb|ADH86044.1| GreA/GreB family elongation factor [Desulfurivibrio alkaliphilus
AHT2]
Length = 161
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 74/156 (47%), Positives = 114/156 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV++IP+T G +K++QEL Q+ ERPRII+AI AR +GDL ENAEY AAKE Q+ E
Sbjct: 1 MVERIPMTRNGHEKLRQELNQLQRVERPRIIQAIETAREHGDLKENAEYHAAKERQSHVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL++ ++R+EVID S + +R+ FG V+LV+ ++ D+ YQ++G +EA V+ G +
Sbjct: 61 GRIMELKDKLSRSEVIDCSALDCERVVFGVVVTLVDLDTDDEIRYQLLGPEEASVEDGSI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SP+ RA+IGK +GD + V PGG + +E++++
Sbjct: 121 SVLSPLGRAMIGKSVGDEVVVKTPGGIRQFEVMEIS 156
>gi|84624395|ref|YP_451767.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|166711939|ref|ZP_02243146.1| transcription elongation factor GreA [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|84368335|dbj|BAE69493.1| transcription elongation factor greA [Xanthomonas oryzae pv. oryzae
MAFF 311018]
Length = 158
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 78/154 (50%), Positives = 119/154 (77%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +
Sbjct: 4 PMTSKGALRLREELEQLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63
Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ GL++ISS
Sbjct: 64 LEGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 124 PLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 157
>gi|126175452|ref|YP_001051601.1| transcription elongation factor GreA [Shewanella baltica OS155]
gi|153001803|ref|YP_001367484.1| transcription elongation factor GreA [Shewanella baltica OS185]
gi|160876536|ref|YP_001555852.1| transcription elongation factor GreA [Shewanella baltica OS195]
gi|217972302|ref|YP_002357053.1| transcription elongation factor GreA [Shewanella baltica OS223]
gi|304410278|ref|ZP_07391897.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
gi|307302011|ref|ZP_07581769.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
gi|125998657|gb|ABN62732.1| transcription elongation factor GreA [Shewanella baltica OS155]
gi|151366421|gb|ABS09421.1| transcription elongation factor GreA [Shewanella baltica OS185]
gi|160862058|gb|ABX50592.1| transcription elongation factor GreA [Shewanella baltica OS195]
gi|217497437|gb|ACK45630.1| transcription elongation factor GreA [Shewanella baltica OS223]
gi|304351687|gb|EFM16086.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
gi|306914049|gb|EFN44470.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
gi|315268730|gb|ADT95583.1| transcription elongation factor GreA [Shewanella baltica OS678]
Length = 158
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T G +++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E
Sbjct: 1 MTKVPMTVVGAEQLRKELDILKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICEA 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++ M + RI FGATV+++ ++ + Y+IVGD EA+++ L+
Sbjct: 61 RIRDIEGKLSNAQIIDVTKMVNNGRIIFGATVTILNLDTDVEVTYRIVGDDEANIKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK GD +S+ PGG YEI+ V ++
Sbjct: 121 SVNSPIARGLVGKNEGDEVSITTPGGMTDYEIISVQYL 158
>gi|25453016|sp|Q9PEC0|GREA_XYLFA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
Length = 158
Score = 170 bits (432), Expect = 4e-41, Method: Composition-based stats.
Identities = 80/154 (51%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ +
Sbjct: 4 PMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63
Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ AEVID++ ++ G +I FGATV+LV+ + ++ YQIVGD EAD++ GLV+ISS
Sbjct: 64 LEGELSHAEVIDVAKLNAGTKIVFGATVTLVDLETDEESRYQIVGDLEADIKQGLVAISS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 124 PVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157
>gi|57237342|ref|YP_178355.1| transcription elongation factor GreA [Campylobacter jejuni RM1221]
gi|88597201|ref|ZP_01100436.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 84-25]
gi|148926989|ref|ZP_01810665.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
CG8486]
gi|157414583|ref|YP_001481839.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 81116]
gi|205356059|ref|ZP_03222827.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
CG8421]
gi|218561949|ref|YP_002343728.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|25453017|sp|Q9PIK9|GREA_CAMJE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|73621018|sp|Q5HWI0|GREA_CAMJR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|172047031|sp|A8FK75|GREA_CAMJ8 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|57166146|gb|AAW34925.1| transcription elongation factor GreA [Campylobacter jejuni RM1221]
gi|88190262|gb|EAQ94236.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 84-25]
gi|112359655|emb|CAL34440.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
NCTC 11168]
gi|145844397|gb|EDK21506.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
CG8486]
gi|157385547|gb|ABV51862.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
81116]
gi|205346183|gb|EDZ32818.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
CG8421]
gi|284925562|gb|ADC27914.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni IA3902]
gi|307747227|gb|ADN90497.1| Transcription elongation factor greA [Campylobacter jejuni subsp.
jejuni M1]
gi|315057711|gb|ADT72040.1| Transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni S3]
gi|315927206|gb|EFV06556.1| Transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni DFVF1099]
gi|315930041|gb|EFV09180.1| Transcription elongation factor [Campylobacter jejuni subsp. jejuni
305]
Length = 161
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 63/156 (40%), Positives = 103/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E
Sbjct: 1 MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E ++ G +S
Sbjct: 61 RIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGNLDKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIA+A++GK+ GD V P GE +EIL + +
Sbjct: 121 IASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156
>gi|115377193|ref|ZP_01464405.1| transcription elongation factor GreA [Stigmatella aurantiaca
DW4/3-1]
gi|310821199|ref|YP_003953557.1| transcription elongation factor GreA [Stigmatella aurantiaca
DW4/3-1]
gi|115365776|gb|EAU64799.1| transcription elongation factor GreA [Stigmatella aurantiaca
DW4/3-1]
gi|309394271|gb|ADO71730.1| Transcription elongation factor GreA [Stigmatella aurantiaca
DW4/3-1]
Length = 169
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 74/157 (47%), Positives = 108/157 (68%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M IP+T G K+++EL+ Q ER +I + I ARA+GDL ENAEY AAKE Q E
Sbjct: 1 MSGNIPMTPSGLRKLKEELKQLQTVERGKISREIEVARAHGDLRENAEYHAAKEKQGHIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ +L + I RAEVID S + GD++ FGATV L++ + Y+IVG+ EAD++ +
Sbjct: 61 GRILDLNDWIARAEVIDTSKLKGDKVVFGATVVLLDSETDKTVTYRIVGELEADIKKRWL 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+++SP+ARALIGK +GD+ V +PGGE+ YE+ ++ +
Sbjct: 121 AVTSPVARALIGKGVGDVALVRSPGGEREYEVQEIRF 157
>gi|316984555|gb|EFV63520.1| transcription elongation factor GreA domain protein [Neisseria
meningitidis H44/76]
Length = 173
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 16 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 75
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 76 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVIYQIVGEDEADIKQGKI 135
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 136 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 173
>gi|153951319|ref|YP_001398665.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
doylei 269.97]
gi|189042239|sp|A7H585|GREA_CAMJD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|152938765|gb|ABS43506.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
doylei 269.97]
Length = 161
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 64/156 (41%), Positives = 102/156 (65%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E
Sbjct: 1 MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ EL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +S
Sbjct: 61 RIVELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGDLDKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIARA++GK+ GD V P GE +EIL + +
Sbjct: 121 IASPIARAMLGKKEGDDFKVRLPKGESEFEILSINY 156
>gi|88812984|ref|ZP_01128227.1| transcription elongation factor GreA [Nitrococcus mobilis Nb-231]
gi|88789762|gb|EAR20886.1| transcription elongation factor GreA [Nitrococcus mobilis Nb-231]
Length = 158
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 82/157 (52%), Positives = 119/157 (75%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL + ERP+I++AI+EARA+GDL ENAEY AA+E Q+L EG
Sbjct: 1 MSRRPLTVRGAQMLKEELARLKTRERPKIVRAIAEARAHGDLKENAEYHAAREQQSLLEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE + A++ID+ ++S D ++ FG TV L E++SGD+ YQIVG+ EAD++ G V
Sbjct: 61 RIAELEEKLANAQIIDVRSLSADGKVVFGVTVVLAEESSGDEMTYQIVGEDEADIKHGKV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SPIARALIGKE G+I+ V AP G ++YEI++V +
Sbjct: 121 SIHSPIARALIGKEEGEIVEVRAPAGNRSYEIVEVRY 157
>gi|71276055|ref|ZP_00652336.1| Prokaryotic transcription elongation factor GreA [Xylella
fastidiosa Dixon]
gi|71899477|ref|ZP_00681635.1| Prokaryotic transcription elongation factor GreA [Xylella
fastidiosa Ann-1]
gi|170729661|ref|YP_001775094.1| transcription elongation factor GreA [Xylella fastidiosa M12]
gi|238687951|sp|B0U568|GREA_XYLFM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71163138|gb|EAO12859.1| Prokaryotic transcription elongation factor GreA [Xylella
fastidiosa Dixon]
gi|71730790|gb|EAO32863.1| Prokaryotic transcription elongation factor GreA [Xylella
fastidiosa Ann-1]
gi|167964454|gb|ACA11464.1| GreA/GreB family elongation factor [Xylella fastidiosa M12]
Length = 158
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ +
Sbjct: 4 PMTLKGVRRLRDELEHLKLVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63
Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ AEVID++ ++ G +I FGATV+L + + ++ YQIVGD EAD++ GLV+ISS
Sbjct: 64 LEGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDEESRYQIVGDLEADIKQGLVAISS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 124 PVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157
>gi|291277117|ref|YP_003516889.1| transcription elongation factor [Helicobacter mustelae 12198]
gi|290964311|emb|CBG40161.1| transcription elongation factor [Helicobacter mustelae 12198]
Length = 161
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 63/152 (41%), Positives = 102/152 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++K++ EL+ ++ +RP I+K I AR++GDL ENAEY AAKE Q E R+ +
Sbjct: 3 PITQYGYEKLRAELKDLKEIQRPNIVKDIDIARSHGDLKENAEYHAAKEKQLFIEARIND 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +++ ++ID T+S ++++FG++V + ++ Y IVG E+D GL+S SP
Sbjct: 63 LTLLLSNVQIIDPHTLSHEKVSFGSSVKIRNLDTEKTFCYTIVGSVESDPARGLISFGSP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA++LIGK +GD +S+ P GE +EIL+V +
Sbjct: 123 IAKSLIGKIVGDEVSIVLPNGESDFEILEVFY 154
>gi|85712942|ref|ZP_01043982.1| Transcription elongation factor GreA [Idiomarina baltica OS145]
gi|85693248|gb|EAQ31206.1| Transcription elongation factor GreA [Idiomarina baltica OS145]
Length = 158
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 68/146 (46%), Positives = 112/146 (76%), Gaps = 1/146 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP+T +G ++++QEL+ + E+RPRI++AI++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNQIPMTERGAEQLRQELKRLKTEDRPRIVEAIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++ A++ID++ + + ++ FG+TV++ + ++ YQIVGD EAD++S L+
Sbjct: 61 RIQEIESKLSNAQIIDVTKVPNNGKVIFGSTVTVYNTKTDEEVTYQIVGDDEADIKSNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S++SPIARALIGKE+ DI +V P G
Sbjct: 121 SVNSPIARALIGKEIDDIATVTTPNG 146
>gi|110833180|ref|YP_692039.1| transcription elongation factor GreA [Alcanivorax borkumensis SK2]
gi|110646291|emb|CAL15767.1| transcription elongation factor GreA [Alcanivorax borkumensis SK2]
Length = 170
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ ++P+T+KG +++EL ++E+RPRI AI+EAR +GDL ENAEY AA+E Q E
Sbjct: 12 IMQRVPMTAKGAKALREELEKLKKEDRPRISAAIAEAREHGDLKENAEYHAAREQQGFCE 71
Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+A++E ++ A++IDI + + ++ FG TV++++ ++ + K YQIVGD EA+++ G
Sbjct: 72 GRIADIEGKLSNAQIIDIQDIENTGKVIFGVTVTILDVDTDETKVYQIVGDDEANIKEGK 131
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIAR LIG+E GD++ ++ PGG + YE+ QV I
Sbjct: 132 LSVNSPIARGLIGREEGDVVQIDTPGGTREYEVDQVEHI 170
>gi|77166029|ref|YP_344554.1| transcription elongation factor GreA [Nitrosococcus oceani ATCC
19707]
gi|254436361|ref|ZP_05049867.1| transcription elongation factor GreA subfamily [Nitrosococcus
oceani AFC27]
gi|123593533|sp|Q3J822|GREA_NITOC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|76884343|gb|ABA59024.1| transcription elongation factor GreA [Nitrosococcus oceani ATCC
19707]
gi|207088051|gb|EDZ65324.1| transcription elongation factor GreA subfamily [Nitrosococcus
oceani AFC27]
Length = 158
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 74/157 (47%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T KG ++++EL+ + RP+++ AI+EARA+GDL ENAEY AA+E Q EG
Sbjct: 1 MNKVPLTEKGAQQLREELQELKTVVRPKVVTAIAEARAHGDLKENAEYHAAREEQGFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +LE+ + A++ID+S + D R+ FG TV LV + ++ +YQIVGD EA+++ +
Sbjct: 61 RIRDLEHQLAHAQIIDVSKLQKDGRVVFGVTVDLVNIETDEEASYQIVGDLEANIKENKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIARALIGK GD I V AP G YEI + +
Sbjct: 121 SINSPIARALIGKREGDEIQVQAPSGIILYEIAAIGY 157
>gi|227892809|ref|ZP_04010614.1| transcriptional elongation factor [Lactobacillus ultunensis DSM
16047]
gi|227865450|gb|EEJ72871.1| transcriptional elongation factor [Lactobacillus ultunensis DSM
16047]
Length = 159
Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T++G +K+Q EL+ + +RP +IK I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIKRIKVARSFGDLSENSEYDAAKDEQSHV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G
Sbjct: 61 EDRIAQVEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK+ G+ +S+ PGG+ I +V
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGKFDVVINKVE 157
>gi|170765496|ref|ZP_02900307.1| transcription elongation factor GreA [Escherichia albertii TW07627]
gi|170124642|gb|EDS93573.1| transcription elongation factor GreA [Escherichia albertii TW07627]
Length = 158
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 68/146 (46%), Positives = 105/146 (71%), Gaps = 1/146 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ M + R+ FGATV+++ +S +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S++SPIAR LIGKE D++ + PGG
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGG 146
>gi|325925177|ref|ZP_08186590.1| transcription elongation factor GreA [Xanthomonas perforans 91-118]
gi|325544431|gb|EGD15801.1| transcription elongation factor GreA [Xanthomonas perforans 91-118]
Length = 154
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 77/153 (50%), Positives = 118/153 (77%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L
Sbjct: 1 MTSKGAQRLREELEHLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E+ ++ AE+IDI+ +S G +I FGATV+L + + ++K YQIVGD EAD++ GL++ISSP
Sbjct: 61 ESELSHAEIIDITKLSAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 121 LARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 153
>gi|256823598|ref|YP_003147561.1| transcription elongation factor GreA [Kangiella koreensis DSM
16069]
gi|256797137|gb|ACV27793.1| transcription elongation factor GreA [Kangiella koreensis DSM
16069]
Length = 160
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 68/160 (42%), Positives = 113/160 (70%), Gaps = 3/160 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++++P+T +G + +Q EL ++ +RP+++ AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MNRVPMTVEGAEALQTELNELKKVKRPQVVAAIAEAREHGDLKENAEYHAAREQQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSG--DKKNYQIVGDQEADVQSG 118
R+ E+E ++ ++++D++ +S + ++ FG+TV L+ + D+ Y+IVGD EAD++
Sbjct: 61 RIQEIEAKLSNSQIVDVTKISNNGKVIFGSTVILINMDDNNADEVQYKIVGDDEADIKKN 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SI+SPIAR LIGKE GDI ++ P G YEI +VL++
Sbjct: 121 KLSINSPIARGLIGKEEGDIANIQTPKGSVEYEIAEVLYL 160
>gi|315932570|gb|EFV11502.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
jejuni 327]
Length = 161
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 64/156 (41%), Positives = 103/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E
Sbjct: 1 MQKEPMSQFGYDKLAAELKDLKDNQRPTVVIEIDTARSHGDLKENAEYHAAREKQALIES 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E D+ G +S
Sbjct: 61 RIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGDLDKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIA+A++GK+ GD V P GE +EIL + +
Sbjct: 121 IASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156
>gi|305432833|ref|ZP_07401991.1| transcription elongation factor GreA [Campylobacter coli JV20]
gi|304443987|gb|EFM36642.1| transcription elongation factor GreA [Campylobacter coli JV20]
Length = 161
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 63/156 (40%), Positives = 103/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E
Sbjct: 1 MQKEPMSQFGYDKLSAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQTLIES 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL ++I RA++ID S+ D + FG++V +++ ++ + Y +VG E D+ G +S
Sbjct: 61 RIAELSDLIARAQIIDPSSYEHDSVKFGSSVVIMDLDTEKENKYTLVGTCEGDLDKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIA+A++GK+ GD V P GE +EI+ + +
Sbjct: 121 IASPIAKAMLGKKEGDEFKVRLPKGESEFEIISINY 156
>gi|240014222|ref|ZP_04721135.1| transcription elongation factor GreA [Neisseria gonorrhoeae DGI18]
gi|240080847|ref|ZP_04725390.1| transcription elongation factor GreA [Neisseria gonorrhoeae FA19]
gi|240115541|ref|ZP_04729603.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID18]
gi|240117836|ref|ZP_04731898.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID1]
gi|240121785|ref|ZP_04734747.1| transcription elongation factor GreA [Neisseria gonorrhoeae
PID24-1]
gi|240125640|ref|ZP_04738526.1| transcription elongation factor GreA [Neisseria gonorrhoeae
SK-92-679]
gi|268596964|ref|ZP_06131131.1| transcription elongation factor [Neisseria gonorrhoeae FA19]
gi|268601215|ref|ZP_06135382.1| transcription elongation factor [Neisseria gonorrhoeae PID18]
gi|268603535|ref|ZP_06137702.1| transcription elongation factor [Neisseria gonorrhoeae PID1]
gi|268684227|ref|ZP_06151089.1| transcription elongation factor [Neisseria gonorrhoeae SK-92-679]
gi|268550752|gb|EEZ45771.1| transcription elongation factor [Neisseria gonorrhoeae FA19]
gi|268585346|gb|EEZ50022.1| transcription elongation factor [Neisseria gonorrhoeae PID18]
gi|268587666|gb|EEZ52342.1| transcription elongation factor [Neisseria gonorrhoeae PID1]
gi|268624511|gb|EEZ56911.1| transcription elongation factor [Neisseria gonorrhoeae SK-92-679]
Length = 158
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 61 RISELEHKLSVAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y I++V +I
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYGIIEVRYI 158
>gi|71897683|ref|ZP_00679928.1| Prokaryotic transcription elongation factor GreA [Xylella
fastidiosa Ann-1]
gi|71732586|gb|EAO34639.1| Prokaryotic transcription elongation factor GreA [Xylella
fastidiosa Ann-1]
Length = 158
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 79/154 (51%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ +
Sbjct: 4 PMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63
Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ AEVID++ ++ G +I FGATV+L + + ++ YQIVGD EAD++ GLV+ISS
Sbjct: 64 LEGELSHAEVIDVAKLNAGTKIVFGATVTLADLETDEESRYQIVGDLEADIKQGLVAISS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 124 PVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157
>gi|325915491|ref|ZP_08177804.1| transcription elongation factor GreA [Xanthomonas vesicatoria ATCC
35937]
gi|325538292|gb|EGD09975.1| transcription elongation factor GreA [Xanthomonas vesicatoria ATCC
35937]
Length = 154
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 75/153 (49%), Positives = 118/153 (77%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+KG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L
Sbjct: 1 MTAKGAQRLREELDQLKSVKRPAVIAAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ G+++ISSP
Sbjct: 61 EGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGMIAISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 121 LARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 153
>gi|332703955|ref|ZP_08424043.1| transcription elongation factor GreA [Desulfovibrio africanus str.
Walvis Bay]
gi|332554104|gb|EGJ51148.1| transcription elongation factor GreA [Desulfovibrio africanus str.
Walvis Bay]
Length = 163
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP++ +GF ++++EL ++ +RP II+AI EAR GDL EN+ Y AA+E L E
Sbjct: 1 MSSIPISVEGFQRLEKELHNLKK-DRPEIIQAIKEAREEGDLRENSGYHAARERLGLLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ +E+ + + +ID++T+ GD+ FGATV + + ++GDKK Y ++G EA+ G +S
Sbjct: 60 RISFIESRMPQFNIIDLATLGGDKAIFGATVEIEDMDTGDKKRYTLLGPDEAEPTKGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ +AL+GKE GD I VNAP G YEI+ + +
Sbjct: 120 ILSPVGQALLGKEAGDEIVVNAPRGRIQYEIISIRF 155
>gi|284799703|ref|ZP_05984625.2| transcription elongation factor GreA [Neisseria subflava NJ9703]
gi|284797264|gb|EFC52611.1| transcription elongation factor GreA [Neisseria subflava NJ9703]
Length = 162
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 5 MQKIPLTVRGAELLKQELQHLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 64
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A +I+ + + +I FG TV+L + + ++ YQIVG+ EAD++ +
Sbjct: 65 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKEHKI 124
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD+ V APGG + Y+I+ V +I
Sbjct: 125 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 162
>gi|242308872|ref|ZP_04808027.1| transcription elongation factor GreA [Helicobacter pullorum MIT
98-5489]
gi|239524536|gb|EEQ64402.1| transcription elongation factor GreA [Helicobacter pullorum MIT
98-5489]
Length = 159
Score = 170 bits (431), Expect = 6e-41, Method: Composition-based stats.
Identities = 63/152 (41%), Positives = 102/152 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ E
Sbjct: 3 PMTEYGYNKLISELKNLKEVERPNNIKEIDAAREHGDLKENAEYHAARERQLFLDARINE 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++ A VID ST++ D+++FG+T++L + S ++ Y IVG E++ GL+S SP
Sbjct: 63 LTQLVAEARVIDPSTINHDKVSFGSTITLEDLESEEQFCYTIVGATESNPDKGLISYHSP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ L+GK +GD ++++ P G+ YEIL++ +
Sbjct: 123 LAKQLLGKVVGDEVTISLPKGKVDYEILEICY 154
>gi|255068112|ref|ZP_05319967.1| transcription elongation factor GreA [Neisseria sicca ATCC 29256]
gi|261364737|ref|ZP_05977620.1| transcription elongation factor GreA [Neisseria mucosa ATCC 25996]
gi|255047627|gb|EET43091.1| transcription elongation factor GreA [Neisseria sicca ATCC 29256]
gi|288567037|gb|EFC88597.1| transcription elongation factor GreA [Neisseria mucosa ATCC 25996]
Length = 158
Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQRLKSVARPEIIEAIAEARSHGDLSENAEYEAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 61 RISELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKEGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD+ V APGG + Y+I+ V +I
Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIISVQYI 158
>gi|259500541|ref|ZP_05743443.1| transcription elongation factor GreA [Lactobacillus iners DSM
13335]
gi|315653624|ref|ZP_07906544.1| transcription elongation factor GreA [Lactobacillus iners ATCC
55195]
gi|259167925|gb|EEW52420.1| transcription elongation factor GreA [Lactobacillus iners DSM
13335]
gi|315488986|gb|EFU78628.1| transcription elongation factor GreA [Lactobacillus iners ATCC
55195]
Length = 174
Score = 170 bits (431), Expect = 7e-41, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T++G DK+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 14 MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 73
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E ++ A+VID ++ + ++ G TV+ E + D + Y IVG E+D SG
Sbjct: 74 EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEMYTIVGSDESDPLSGK 133
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK+ GD++S+N PGG I +V
Sbjct: 134 ISNDSPIAKALLGKKKGDVVSINTPGGLFEVTIDEVT 170
>gi|304413874|ref|ZP_07395291.1| transcription elongation factor [Candidatus Regiella insecticola
LSR1]
gi|304283594|gb|EFL91989.1| transcription elongation factor [Candidatus Regiella insecticola
LSR1]
Length = 162
Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T G +K+++EL + + + R II AI+EARA+GDL ENAEY AA+E Q EG
Sbjct: 1 MAQIPMTVCGEEKLRKELEYLKNKRRQEIITAIAEARAHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ + + RI FG+TV+++ + ++ Y+IVGD EA+ + L+
Sbjct: 61 RIQEIETKLSNAQVIDVTEIVNNGRIIFGSTVTVLNIATDEEYIYRIVGDDEANAKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SP+AR LIGK++ D + PGG+ YEI+ V ++
Sbjct: 121 SVNSPMARGLIGKQIDDTTVITTPGGDIEYEIIAVEYL 158
>gi|134094396|ref|YP_001099471.1| putative transcription elongation factor and transcript cleavage
[Herminiimonas arsenicoxydans]
gi|133738299|emb|CAL61344.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Herminiimonas arsenicoxydans]
Length = 157
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 81/154 (52%), Positives = 113/154 (73%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G + +++EL + +ERP +I AI+EARA GDLSENA+Y AAKE Q+ EGR+A+
Sbjct: 4 PITPHGANLMKEELHRLKTKERPWVINAIAEARAQGDLSENADYDAAKEKQSFIEGRIAD 63
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE + +++ID +T+ D RI F ATV L + +SGDK YQIVG EAD++ VSI+S
Sbjct: 64 LEGKLGTSQIIDPTTLEADGRIVFAATVDLEDLDSGDKVTYQIVGIDEADLKEKKVSITS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
PIARA+IGK +GD+++V AP G + YE+LQV +I
Sbjct: 124 PIARAMIGKSVGDVVAVEAPAGIREYEVLQVRYI 157
>gi|294085795|ref|YP_003552555.1| transcription elongation factor [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292665370|gb|ADE40471.1| Transcription elongation factor [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 167
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 74/155 (47%), Positives = 110/155 (70%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP T++G + I++EL + ER +I AI+ AR +GDLSENAEY AA+E Q+ EG
Sbjct: 6 MEKIPFTAQGLEAIKEELAHLKGTERQAVINAIAVAREHGDLSENAEYHAARERQSFIEG 65
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ELE + +R+EVID S ++GD++ FG +V + ++ + ++ + IVG EAD+ GLVS
Sbjct: 66 RISELEAVTSRSEVIDASQLTGDKVTFGTSVGVADEETDEESIFHIVGPYEADISKGLVS 125
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SSPIAR LIGK +GD + PGG K+YEI+ +
Sbjct: 126 TSSPIARGLIGKGIGDSAEIQTPGGTKSYEIISIE 160
>gi|303327141|ref|ZP_07357583.1| transcription elongation factor GreA [Desulfovibrio sp. 3_1_syn3]
gi|302863129|gb|EFL86061.1| transcription elongation factor GreA [Desulfovibrio sp. 3_1_syn3]
Length = 162
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 64/156 (41%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP++ +G+ K+++EL + ERP II+AI EAR GDL ENA Y AA+E Q + E
Sbjct: 1 MTSIPISVQGYKKLEEELARLKS-ERPAIIQAIKEAREEGDLRENAGYDAARERQGMAEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +E+ + +V+D+ +SGD++ FG+TV + + +SG+ +N+ I+G EAD G +S
Sbjct: 60 RIKYIESRLALYQVVDLDKLSGDKVIFGSTVEVEDVDSGESRNFTILGPDEADPSKGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ +AL+GKE GD ++V P G TYE++ + +
Sbjct: 120 FLSPVGQALLGKEEGDEVTVEIPRGRVTYEVVSIAF 155
>gi|226946316|ref|YP_002801389.1| transcription elongation factor GreA [Azotobacter vinelandii DJ]
gi|226721243|gb|ACO80414.1| Prokaryotic transcription elongation factor GreA [Azotobacter
vinelandii DJ]
Length = 158
Score = 170 bits (430), Expect = 8e-41, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++EL+ + E RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MTKFPMTVQGARALEEELKHLKTELRPQITQAIAEARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A+VID++ + ++ FG TV + + + YQIVGD EAD++ G +
Sbjct: 61 RIRDIEGRLQNAQVIDVTAIPHTGKVIFGVTVEIANVETDETVVYQIVGDDEADIKQGKL 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARAL+GKE GD+ +V P G YEI++V +
Sbjct: 121 SVSSPIARALVGKEEGDVAAVKTPSGTVEYEIIEVRHV 158
>gi|89101202|ref|ZP_01174032.1| transcription elongation factor GreA [Bacillus sp. NRRL B-14911]
gi|89084088|gb|EAR63259.1| transcription elongation factor GreA [Bacillus sp. NRRL B-14911]
Length = 158
Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats.
Identities = 63/152 (41%), Positives = 98/152 (64%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G +K++QEL + +R +++ I AR++GDLSEN+EY +AKE Q EGR+
Sbjct: 7 FPMTQAGKEKLEQELEHLKTVKRKDVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LEN+I A++I+ SGD + G +V+ VE G++++Y IVG EAD G +S S
Sbjct: 67 TLENMIRNAKIIEEDEASGDTVTLGRSVTFVELPDGEEESYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK +GD ++V PGG+ + I +
Sbjct: 127 PIAKSLMGKRVGDEVTVQTPGGDMSVRITSIK 158
>gi|308272737|emb|CBX29341.1| Transcription elongation factor greA [uncultured Desulfobacterium
sp.]
Length = 155
Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats.
Identities = 72/155 (46%), Positives = 108/155 (69%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+IP+T +G++ +++EL ++ ERP IKAI EARA+GDLSENAE+ AAK+ Q E
Sbjct: 1 MDRIPITKRGYETLKKELEHLKKVERPGNIKAIEEARAHGDLSENAEFAAAKDRQAYLEC 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ EL I A+VID ++ DR FG TV L ++GD YQ+VG E+D+ G +S
Sbjct: 61 RIGELSYKIGNADVIDPDSLPKDRAVFGCTVVLENIDTGDTIEYQLVGPDESDIGKGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+SSP+ A+IGK+ G+ I + APGG++ YE++++L
Sbjct: 121 VSSPLGMAIIGKKSGEEIVLQAPGGKRFYELVEIL 155
>gi|283955240|ref|ZP_06372741.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
414]
gi|283793277|gb|EFC32045.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
414]
Length = 161
Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 103/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E
Sbjct: 1 MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL +++ RA+VID S+ D + FG++V +++ ++ + Y +VG E ++ G +S
Sbjct: 61 RIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGNLDKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIA+A++GK+ GD V P GE +EI+ + +
Sbjct: 121 IASPIAKAMLGKKEGDDFKVRLPKGESEFEIISINY 156
>gi|325922459|ref|ZP_08184226.1| transcription elongation factor GreA [Xanthomonas gardneri ATCC
19865]
gi|325547079|gb|EGD18166.1| transcription elongation factor GreA [Xanthomonas gardneri ATCC
19865]
Length = 154
Score = 170 bits (430), Expect = 9e-41, Method: Composition-based stats.
Identities = 75/153 (49%), Positives = 118/153 (77%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+KG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L
Sbjct: 1 MTAKGAQRLREELDQLKSVKRPAVISAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ G+++ISSP
Sbjct: 61 EGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGMIAISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 121 LARALIGKLEGDSVTIDAPAGQRDYEVVSVAYL 153
>gi|260103131|ref|ZP_05753368.1| transcription elongation factor GreA [Lactobacillus helveticus DSM
20075]
gi|260083041|gb|EEW67161.1| transcription elongation factor GreA [Lactobacillus helveticus DSM
20075]
gi|328464780|gb|EGF36095.1| transcription elongation factor GreA [Lactobacillus helveticus MTCC
5463]
Length = 158
Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G
Sbjct: 61 EDRIAQIEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDAETYTIVGSDESDPLNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK+ G+ +S+ PGG+ I V
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGQFDVVINNVE 157
>gi|91792357|ref|YP_562008.1| transcription elongation factor GreA [Shewanella denitrificans
OS217]
gi|91714359|gb|ABE54285.1| transcription elongation factor GreA [Shewanella denitrificans
OS217]
Length = 158
Score = 169 bits (429), Expect = 9e-41, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T G +++++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q + E
Sbjct: 1 MSKVPMTVVGAEQLRKELELLKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICEA 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++ + + R+ FG TV+++ + + Y+IVGD EAD++ L+
Sbjct: 61 RIRDIEGKLSNAQIIDVTKIENTGRVIFGTTVTILNVETDAEVKYRIVGDDEADIKQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +S+ PGG YEI+ V +I
Sbjct: 121 SVNSPIARGLIGKNEGDEVSITTPGGLTDYEIIAVEYI 158
>gi|260429205|ref|ZP_05783182.1| transcription elongation factor GreA [Citreicella sp. SE45]
gi|260419828|gb|EEX13081.1| transcription elongation factor GreA [Citreicella sp. SE45]
Length = 156
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 81/156 (51%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KI +T GF ++ EL+ + EERP +I+AI+EAR GDL ENAEY +A+E Q EG
Sbjct: 1 MEKILITRAGFTALETELKKLKSEERPAVIQAIAEARELGDLKENAEYHSAREKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E+I+ AEVID T+SG + FGATV +V++++ ++K +QIVG+ EA ++ GL++
Sbjct: 61 RIKEIESIMGLAEVIDPRTLSG-AVKFGATVKVVDEDTDEEKTWQIVGEHEASIERGLLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SPIARALIGKE GD + V PGGEK+YEIL + +
Sbjct: 120 IKSPIARALIGKEAGDSVEVRTPGGEKSYEILSIDY 155
>gi|308050593|ref|YP_003914159.1| transcription elongation factor GreA [Ferrimonas balearica DSM
9799]
gi|307632783|gb|ADN77085.1| transcription elongation factor GreA [Ferrimonas balearica DSM
9799]
Length = 158
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ ++P+T +G + +++EL + + RP+I +AI+ AR GDL ENAEY AA+E Q L E
Sbjct: 1 MSQVPMTVRGAELLREELDYLKHTRRPKITEAIAAARELGDLKENAEYHAAREEQGLTEA 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E+ ++ A++ID++ + + RI FGAT +L+ S + Y+IVGD EAD+++GL+
Sbjct: 61 RIRDIESKLSVAQIIDVTKIPNNGRIIFGATATLLNVESDQEVTYRIVGDDEADLKAGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARA+IGKEL D++ V AP G+ YE+++V ++
Sbjct: 121 SVNSPIARAMIGKELDDVLVVKAPSGDIEYEVVEVKYL 158
>gi|160871787|ref|ZP_02061919.1| transcription elongation factor GreA [Rickettsiella grylli]
gi|159120586|gb|EDP45924.1| transcription elongation factor GreA [Rickettsiella grylli]
Length = 158
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T G +++EL + +RP++I AI+EAR++GDL ENAEY AAKE+Q EG
Sbjct: 1 MKKIPMTISGAQYLKKELHQLKTLKRPQVIAAIAEARSHGDLKENAEYHAAKEMQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+EN + A++ID++ ++ ++ FG+T+ L+ ++ ++ YQIVG+ EAD++ +
Sbjct: 61 RITEIENKLASAQIIDVTKLNNLGKVIFGSTIHLMNTHTHEQVTYQIVGEDEADIKHSKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIARALIGKE GD++ V P G I +V +I
Sbjct: 121 SVASPIARALIGKEEGDLVEVQTPSGLVNLAIDKVEYI 158
>gi|192360133|ref|YP_001983144.1| transcription elongation factor [Cellvibrio japonicus Ueda107]
gi|190686298|gb|ACE83976.1| transcription elongation factor [Cellvibrio japonicus Ueda107]
Length = 159
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 73/159 (45%), Positives = 113/159 (71%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T G +K++ EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q+ E
Sbjct: 1 MSTKFPMTITGAEKLRLELEDLKKVQRPRIVQAIAEAREHGDLKENAEYSAAREQQSFCE 60
Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E ++ A++ID++T+ ++ FG TV+++ + YQIVGD EA+V++
Sbjct: 61 GRIKEIEGKLSNAQIIDVTTIPHTGKVIFGTTVTIINIETEQALTYQIVGDDEAEVKANK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIARAL+GKE GD++ V APGG+ YEI +V +
Sbjct: 121 ISVNSPIARALVGKEEGDVVIVRAPGGDVEYEIDKVEHL 159
>gi|319793964|ref|YP_004155604.1| transcription elongation factor grea [Variovorax paradoxus EPS]
gi|315596427|gb|ADU37493.1| transcription elongation factor GreA [Variovorax paradoxus EPS]
Length = 158
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 83/158 (52%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K++ EL + ERP +I AISEARA GDLSENAEY+ AK+ Q EG
Sbjct: 1 MATIPITKRGAEKLRAELHQLKTVERPWVINAISEARAQGDLSENAEYEVAKDRQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A++ID S + G ++ FG+TV L E+ SG+ YQIVG+ EAD++ GL+
Sbjct: 61 RIQEVEGKLSAAQIIDPSELDAGGKVVFGSTVELEEEESGEAVKYQIVGEDEADLKLGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ISSPIARALIGKE GD V APGG K YEI+ V ++
Sbjct: 121 NISSPIARALIGKEEGDTAEVQAPGGLKRYEIVAVRYL 158
>gi|157962891|ref|YP_001502925.1| transcription elongation factor GreA [Shewanella pealeana ATCC
700345]
gi|157847891|gb|ABV88390.1| transcription elongation factor GreA [Shewanella pealeana ATCC
700345]
Length = 158
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +P+T G ++++EL + E RP+I +AI EAR GDL ENAEY AA+E Q L E
Sbjct: 1 MSTVPMTIVGAAQLRKELDHLKFERRPKIAEAIGEARELGDLKENAEYHAAREEQGLCEA 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A++ID++TM+ + R+ FG+TV++V ++ ++ Y+IVG+ EA+++ L+
Sbjct: 61 RVRDIEGKLSHAQIIDVTTMANNGRVIFGSTVTIVNVDTDEEVTYRIVGEDEANIRENLL 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK L D IS+ PGG +EI++V +I
Sbjct: 121 SVSSPIARGLIGKSLDDEISIVTPGGTNDFEIIKVEYI 158
>gi|94986751|ref|YP_594684.1| transcription elongation factor GreA [Lawsonia intracellularis
PHE/MN1-00]
gi|94731000|emb|CAJ54363.1| transcription elongation factor greA [Lawsonia intracellularis
PHE/MN1-00]
Length = 157
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 65/153 (42%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP++ +G+ +++EL ++ ERP +I+AI EAR GDL ENA Y AA+E Q + E R+
Sbjct: 3 IPISQQGYQNLEKELDRLKK-ERPAVIQAIKEAREEGDLKENAGYDAARERQGMLEARIN 61
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E+ + + +IDI+T+SGD+ FGATV++ + +SG++K + ++G EAD G +SI S
Sbjct: 62 YIESRMAQFNIIDITTLSGDKAIFGATVTVEDIDSGERKEFTLLGPDEADYTKGSISIQS 121
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ RAL+GK++GD ++V+ P G +YEI+ + +
Sbjct: 122 PVGRALLGKKVGDELTVDVPRGRISYEIIDIQF 154
>gi|329893940|ref|ZP_08269975.1| Transcription elongation factor GreA [gamma proteobacterium
IMCC3088]
gi|328923395|gb|EGG30712.1| Transcription elongation factor GreA [gamma proteobacterium
IMCC3088]
Length = 159
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 109/157 (69%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G ++ EL ++ ERPRII AI+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MNKVPMTKAGEMALRAELERLRKVERPRIIAAIAEAREHGDLKENAEYHAAREQQSFAEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VIDI+ + ++ FG T+ L+ + + Y+IVGD EADV+ L+
Sbjct: 61 RIMEIEGKLSYAQVIDITAIPHTGKVIFGTTIDLINLANDQEVTYRIVGDDEADVKRNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+SSPIARALIGKE GD++ V AP G+ YEI QV
Sbjct: 121 SVSSPIARALIGKEEGDVVVVKAPSGDIEYEIDQVRH 157
>gi|91204868|ref|YP_537223.1| transcription elongation factor GreA [Rickettsia bellii RML369-C]
gi|123266252|sp|Q1RKI0|GREA_RICBR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|91068412|gb|ABE04134.1| Transcription elongation factor GreA [Rickettsia bellii RML369-C]
Length = 162
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 115/157 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M+ K P+T +GF+K++ EL+ + ER ++ + I+EARA+GDLSENAEY+AA+E Q E
Sbjct: 1 MMAKFPITDQGFEKLEHELKHLKHVERKKVSEDIAEARAHGDLSENAEYEAAREKQAFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE+I RAE+I+++ +SGD I FGATV L++ + ++ Y IVG+ EAD+ V
Sbjct: 61 ARIKHLEDITARAEIINVAKLSGDSIKFGATVVLIDDETEEEVMYHIVGEYEADITKKRV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SPIA+ALIGK +GDI+ V PGG K+YE++ + +
Sbjct: 121 SIASPIAKALIGKSVGDIVEVMTPGGVKSYEVVTIKY 157
>gi|149183148|ref|ZP_01861597.1| transcription elongation factor GreA [Bacillus sp. SG-1]
gi|148849131|gb|EDL63332.1| transcription elongation factor GreA [Bacillus sp. SG-1]
Length = 158
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 62/151 (41%), Positives = 97/151 (64%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G +K+++EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR++
Sbjct: 7 FPMTQEGKEKLEKELEQLKSVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIS 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LEN+I A++I M+ D + G +V+ +E GD++ Y IVG EAD G +S S
Sbjct: 67 TLENMIRNAKIIQEDEMNSDTVTLGKSVTFIELPDGDEETYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PIA++L+G ++G +SV PGGE +I V
Sbjct: 127 PIAKSLLGHKVGSEVSVQTPGGEMNVKITAV 157
>gi|253827215|ref|ZP_04870100.1| transcription elongation factor [Helicobacter canadensis MIT
98-5491]
gi|253510621|gb|EES89280.1| transcription elongation factor [Helicobacter canadensis MIT
98-5491]
Length = 156
Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats.
Identities = 62/151 (41%), Positives = 101/151 (66%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K+ EL+ ++ ERP IK I AR +GDL ENAEY AA+E Q + R+ EL
Sbjct: 1 MTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ A VID ST++ D+++FG+T++L + +S ++ Y IVG E++ GL+S SP+
Sbjct: 61 TQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSPL 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK +GD +++ P G+ YEIL++ +
Sbjct: 121 AKQLLGKVVGDEVTIQLPKGKVDYEILEICY 151
>gi|32490982|ref|NP_871236.1| hypothetical protein WGLp233 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|31340129|sp|Q8D2W9|GREA_WIGBR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|25166188|dbj|BAC24379.1| greA [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 158
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ IP+T KG +K+++EL++ +Q +R IIK+ISEAR YGDL ENAEYQAAKE Q E
Sbjct: 1 MNYIPMTLKGAEKLREELKYLKQTKRSEIIKSISEARQYGDLKENAEYQAAKEQQYFCES 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ + +++IDI + DR+ FG+T+++ + ++K Y+IVGD EA+ ++ L+
Sbjct: 61 RIKEIESKLMHSKIIDIKKIPFRDRVVFGSTITIKNLKTLEEKTYKIVGDDEANFKNNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSP++R LIGK+ +I+++N P G Y+IL++ ++
Sbjct: 121 SISSPLSRGLIGKKTLEIVNINTPSGIIKYKILKINYL 158
>gi|190574174|ref|YP_001972019.1| transcription elongation factor GreA [Stenotrophomonas maltophilia
K279a]
gi|190012096|emb|CAQ45718.1| putative transcription elongation factor [Stenotrophomonas
maltophilia K279a]
Length = 158
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 75/154 (48%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T KG K++ EL + +RP++I AI+EAR +GDL ENAEY AA+E Q EGR+ +
Sbjct: 4 PITMKGAQKLRDELDHLKSVKRPKVIAAIAEAREHGDLKENAEYHAAREEQGFIEGRIKQ 63
Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ AE+ID+S ++ G ++ FGA+V+L + + ++K YQIVGD EAD++ GL++ISS
Sbjct: 64 LEGELSHAEIIDVSKLNAGSKVVFGASVTLADVETDEEKKYQIVGDLEADIKQGLIAISS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARA+IGK GD I ++AP G++ YEI+ V ++
Sbjct: 124 PVARAMIGKLEGDSIVIDAPAGQREYEIVSVSYV 157
>gi|319639242|ref|ZP_07993993.1| transcription elongation factor greA [Neisseria mucosa C102]
gi|317399426|gb|EFV80096.1| transcription elongation factor greA [Neisseria mucosa C102]
Length = 158
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 76/158 (48%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQHLKSVARPEIIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A +I+ + + +I FG TV+L + + ++ YQIVG+ EAD++ +
Sbjct: 61 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKERKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD+ V APGG + Y+I+ V +I
Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 158
>gi|298368446|ref|ZP_06979764.1| transcription elongation factor GreA [Neisseria sp. oral taxon 014
str. F0314]
gi|298282449|gb|EFI23936.1| transcription elongation factor GreA [Neisseria sp. oral taxon 014
str. F0314]
Length = 158
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP II+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQHLKSVARPEIIEAIAEARSHGDLSENAEYEAAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE ++ A +I+ + + +I FG+TV+L + + ++ YQIVG+ EAD++ +
Sbjct: 61 RISELEYKLSVAHIINPAEIHAEGKIVFGSTVTLEDMETEEQVTYQIVGEDEADIKEHKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD+ V APGG + Y+I+ V +I
Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIISVEYI 158
>gi|57168415|ref|ZP_00367549.1| transcription elongation factor Cj0287c [Campylobacter coli RM2228]
gi|57020223|gb|EAL56897.1| transcription elongation factor Cj0287c [Campylobacter coli RM2228]
Length = 161
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 103/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P++ G+DK+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E
Sbjct: 1 MQKEPMSQFGYDKLSAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL ++I RA++ID S+ D + FG++V +++ ++ + Y +VG E ++ G +S
Sbjct: 61 RIAELSDLIARAQIIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGNLDKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIA+A++GK+ GD V P GE +EI+ + +
Sbjct: 121 IASPIAKAMLGKKEGDEFKVRLPKGESEFEIISINY 156
>gi|315126858|ref|YP_004068861.1| transcription elongation factor greA [Pseudoalteromonas sp. SM9913]
gi|315015372|gb|ADT68710.1| transcription elongation factor greA [Pseudoalteromonas sp. SM9913]
Length = 158
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G ++ EL + RP+I+ I++AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQSIPMTVRGAKLLRDELNELKTVTRPKIVSDIADAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ ++ID++ M ++ FG TV++V + + YQIVGD EAD++S L+
Sbjct: 61 RIQEIEAKLSNMQMIDVTKMPNTGKVIFGTTVTIVNVETDAEVKYQIVGDDEADIKSNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK+ D + + P G+ YEI++V +I
Sbjct: 121 SVNSPIARGLIGKQADDAVIIKTPKGDVEYEIIEVEYI 158
>gi|311069214|ref|YP_003974137.1| transcription elongation factor GreA [Bacillus atrophaeus 1942]
gi|310869731|gb|ADP33206.1| transcription elongation factor GreA [Bacillus atrophaeus 1942]
Length = 158
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 103/158 (65%), Gaps = 2/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + P+T +G K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q
Sbjct: 1 MAQEKVFPMTEEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ LEN+I A++I+ + + + G TV+ +E GD+++Y IVG EAD G
Sbjct: 61 VEGRVTTLENMIRNAKIIEDDGGNSNIVGLGKTVTFIELPDGDEESYTIVGSAEADPFEG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA++LIGK++GD ++V PGGE +I+++
Sbjct: 121 KISNDSPIAKSLIGKQVGDQVTVQTPGGEMLVKIVKIS 158
>gi|34499256|ref|NP_903471.1| transcription elongation factor [Chromobacterium violaceum ATCC
12472]
gi|34105107|gb|AAQ61463.1| transcription elongation factor [Chromobacterium violaceum ATCC
12472]
Length = 158
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 79/158 (50%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T +G + +++EL+ + ERP +I+AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MIKVPLTVRGAELLKEELQRLKSVERPSVIEAIAEARSHGDLSENAEYDAAKERQAFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE ++ A +I+ + + D R+ FGATV L++ + + YQIVGD EAD++ V
Sbjct: 61 RIAELEGKLSNAVIINPAELDADGRVVFGATVDLMDLETEESVTYQIVGDDEADIKVCKV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPI+RALIGKE GD+ V APGG + YE+L V +I
Sbjct: 121 SVNSPISRALIGKEAGDVAEVVAPGGIREYEVLDVKYI 158
>gi|220930922|ref|YP_002507830.1| transcription elongation factor GreA [Halothermothrix orenii H 168]
gi|219992232|gb|ACL68835.1| transcription elongation factor GreA [Halothermothrix orenii H 168]
Length = 161
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 97/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++ +T +G++K+++EL + +R ++ K I AR +GD+ EN+EY AK Q E
Sbjct: 1 MANEVLLTQEGYEKLEKELDYLVNVKRRQVAKRIKVAREFGDIGENSEYDDAKNEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ E+EN++ A +I ++GD + G TV L ++++ + +Y IVG EAD + +
Sbjct: 61 GRIKEIENMLRNARIIKDEEVTGDTVNLGTTVKLKDRSTDEVFSYTIVGSAEADPLNFKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SPI +A+IG ++GD++ V P G YEIL +
Sbjct: 121 SNESPIGKAIIGHKIGDVVKVEVPSGIMEYEILAIE 156
>gi|241759232|ref|ZP_04757338.1| transcription elongation factor GreA [Neisseria flavescens SK114]
gi|241320368|gb|EER56665.1| transcription elongation factor GreA [Neisseria flavescens SK114]
Length = 158
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQHLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A +I+ + + +I FG TV+L + + ++ YQIVG+ EAD++ +
Sbjct: 61 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKERKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD+ V APGG + Y+I+ V +I
Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 158
>gi|225075463|ref|ZP_03718662.1| hypothetical protein NEIFLAOT_00468 [Neisseria flavescens
NRL30031/H210]
gi|224953281|gb|EEG34490.1| hypothetical protein NEIFLAOT_00468 [Neisseria flavescens
NRL30031/H210]
Length = 162
Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 5 MQKIPLTVRGAELLKQELQHLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 64
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE+ ++ A +I+ + + +I FG TV+L + + ++ YQIVG+ EAD++ +
Sbjct: 65 RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKERKI 124
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD+ V APGG + Y+I+ V +I
Sbjct: 125 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 162
>gi|15677289|ref|NP_274442.1| transcription elongation factor [Neisseria meningitidis MC58]
gi|25453012|sp|Q9JYU3|GREA_NEIMB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|7226670|gb|AAF41791.1| transcription elongation factor GreA [Neisseria meningitidis MC58]
gi|325140625|gb|EGC63145.1| transcription elongation factor greA [Neisseria meningitidis CU385]
gi|325199954|gb|ADY95409.1| transcription elongation factor greA [Neisseria meningitidis
H44/76]
Length = 158
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ELE+ ++ A +I+ + + +I FG TV+L + + + YQIVG+ EAD++ G +
Sbjct: 61 RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVIYQIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPIARALIGKE GD V APGG + Y+I++V +I
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158
>gi|239815600|ref|YP_002944510.1| transcription elongation factor GreA [Variovorax paradoxus S110]
gi|239802177|gb|ACS19244.1| transcription elongation factor GreA [Variovorax paradoxus S110]
Length = 158
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K++ EL + +RP +I AISEARA GDLSENAEY+ AK+ Q EG
Sbjct: 1 MATIPITKRGAEKLRAELHQLKTVDRPWVINAISEARAQGDLSENAEYEVAKDRQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A++ID + + G ++ FG+TV L E+ SG+ YQIVG+ EAD++ GL+
Sbjct: 61 RIQEVEGKLSAAQIIDPAELDAGGKVVFGSTVELEEEESGEAVKYQIVGEDEADLKLGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ISSPIARALIGKE GD V APGG K YEI+ V +I
Sbjct: 121 NISSPIARALIGKEEGDTAEVQAPGGLKRYEIVAVRYI 158
>gi|149375765|ref|ZP_01893533.1| Transcription elongation factor [Marinobacter algicola DG893]
gi|149359890|gb|EDM48346.1| Transcription elongation factor [Marinobacter algicola DG893]
Length = 159
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 76/159 (47%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D++P+T G ++++EL+ + E+RPR+I AIS+AR +GDL ENAEY AA+E Q+ E
Sbjct: 1 MADRVPMTKAGEIRLREELQKLKSEDRPRVIAAISDAREHGDLKENAEYHAAREQQSFIE 60
Query: 61 GRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E ++ A+VID++T+ + ++ FG TV L+ ++ ++ +YQIVG+ EAD+++G
Sbjct: 61 GRIQEIEGKLSAAQVIDVNTIENTGKVIFGTTVQLLNVDTDEQVSYQIVGEDEADIKAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SISSPIARAL+GK GD+++V P G YEI QV I
Sbjct: 121 LSISSPIARALVGKSEGDVVAVRVPSGTVEYEIEQVEHI 159
>gi|293381813|ref|ZP_06627786.1| transcription elongation factor GreA [Lactobacillus crispatus
214-1]
gi|290921631|gb|EFD98660.1| transcription elongation factor GreA [Lactobacillus crispatus
214-1]
Length = 158
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G
Sbjct: 61 EDRIAQVEEMLKYAQVVDAESVDPNEVSVGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK+ G+ +S+ PGG+ I +V
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGKFDVVINEVK 157
>gi|194365590|ref|YP_002028200.1| transcription elongation factor GreA [Stenotrophomonas maltophilia
R551-3]
gi|194348394|gb|ACF51517.1| transcription elongation factor GreA [Stenotrophomonas maltophilia
R551-3]
Length = 158
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 74/154 (48%), Positives = 114/154 (74%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T KG K++ EL + +RP++I AI+EAR +GDL ENAEY AA+E Q EGR+ +
Sbjct: 4 PITMKGAQKLRDELDHLKSVKRPKVIAAIAEAREHGDLKENAEYHAAREEQGFIEGRIKQ 63
Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE ++ AE+ID+S ++ G ++ FGA+V+L + + +++ YQIVGD EAD++ GL++ISS
Sbjct: 64 LEGELSHAEIIDVSKLNAGSKVVFGASVTLADVETDEERKYQIVGDLEADIKQGLIAISS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+ARA+IGK GD I ++AP G++ YEI+ V ++
Sbjct: 124 PVARAMIGKLEGDSIVIDAPAGQREYEIVSVSYL 157
>gi|258405567|ref|YP_003198309.1| transcription elongation factor GreA [Desulfohalobium retbaense DSM
5692]
gi|257797794|gb|ACV68731.1| transcription elongation factor GreA [Desulfohalobium retbaense DSM
5692]
Length = 161
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 70/156 (44%), Positives = 107/156 (68%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D IP++ +GF+K++QEL ++ ERP +I+AI EAR GDL ENA Y AA+E Q + E
Sbjct: 1 MDTIPISVEGFEKLKQELENLKK-ERPEVIQAIKEAREEGDLRENAGYDAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +E+ + + VID+ TM GD++AFGATV + + + + K Y ++G EA+V G +S
Sbjct: 60 RITYIESRLPQCNVIDLDTMGGDKVAFGATVEIEDMETEEVKRYTLLGPDEANVDQGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+A+AL+GK +GD VNAP G YE+L + +
Sbjct: 120 VFSPLAKALLGKRVGDEAIVNAPRGRIEYEVLSIEF 155
>gi|197286719|ref|YP_002152591.1| transcription elongation factor GreB [Proteus mirabilis HI4320]
gi|227355091|ref|ZP_03839502.1| transcription elongation factor [Proteus mirabilis ATCC 29906]
gi|194684206|emb|CAR45694.1| transcription elongation factor [Proteus mirabilis HI4320]
gi|227164878|gb|EEI49725.1| transcription elongation factor [Proteus mirabilis ATCC 29906]
Length = 159
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + +EL++ +EERPR+ +++SEA A GD SENAEY K+ +
Sbjct: 1 MAKSNYITRDGWHALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V+L + + + K +++VG E D +
Sbjct: 61 RRVRFLSKRLDELKIVDPDPRQEGKVYFGAWVTLED-DDENIKTFRLVGPDEFDPAKQWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D +SV PGG Y +L + +
Sbjct: 120 SIDSPVARALIGKKVDDEVSVQTPGGIVNYCVLSIKY 156
>gi|227877749|ref|ZP_03995783.1| transcriptional elongation factor [Lactobacillus crispatus JV-V01]
gi|256843602|ref|ZP_05549090.1| transcription elongation factor [Lactobacillus crispatus 125-2-CHN]
gi|256850078|ref|ZP_05555508.1| transcriptional elongation factor [Lactobacillus crispatus
MV-1A-US]
gi|262047366|ref|ZP_06020323.1| transcriptional elongation factor [Lactobacillus crispatus
MV-3A-US]
gi|295693346|ref|YP_003601956.1| transcription elongation factor [Lactobacillus crispatus ST1]
gi|227862652|gb|EEJ70137.1| transcriptional elongation factor [Lactobacillus crispatus JV-V01]
gi|256615022|gb|EEU20223.1| transcription elongation factor [Lactobacillus crispatus 125-2-CHN]
gi|256713050|gb|EEU28041.1| transcriptional elongation factor [Lactobacillus crispatus
MV-1A-US]
gi|260572340|gb|EEX28903.1| transcriptional elongation factor [Lactobacillus crispatus
MV-3A-US]
gi|295031452|emb|CBL50931.1| Transcription elongation factor [Lactobacillus crispatus ST1]
Length = 158
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E ++ A+V+D ++ + ++ G T++ E + D + Y IVG E+D +G
Sbjct: 61 EDRIAQVEEMLKYAQVVDAESVDPNEVSVGKTITYTEVGTDDPETYTIVGSDESDPLNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK+ G+ +S+ PGG+ I +V
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGKFDVVINEVK 157
>gi|238754105|ref|ZP_04615463.1| Transcription elongation factor greB [Yersinia ruckeri ATCC 29473]
gi|238707601|gb|EEP99960.1| Transcription elongation factor greB [Yersinia ruckeri ATCC 29473]
Length = 163
Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + EL++ +EERPR+ +A+SEA A GD SENAEY K+ +
Sbjct: 1 MSKSNYITREGWQALDLELKYLWREERPRVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V + + G+++ +++VG E D +
Sbjct: 61 RRVRFLSKRLDVLKIVDPDPRQEGKVYFGAWVRVEN-DQGEERVFRLVGPDEFDPAKKWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D I+V P GE TYEIL + +
Sbjct: 120 SIDSPVARALIGKQVDDEITVQTPNGEATYEILAIRY 156
>gi|118602845|ref|YP_904060.1| transcription elongation factor GreA [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
gi|189042247|sp|A1AXD2|GREA_RUTMC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|118567784|gb|ABL02589.1| transcription elongation factor GreA [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 158
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ IP+T G ++ EL + RPRII+ I ARA+GDL ENAEY AAKE Q EG
Sbjct: 1 MENIPMTVFGAKVLEAELLKLKNVSRPRIIENIVTARAHGDLKENAEYHAAKEEQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+ ++R +VID++ ++ D R FG T++L+ + Y+IVG+ EAD+ G +
Sbjct: 61 RIKEVESKLSRMQVIDVTKLNQDGRCVFGTTITLMNIEDDSETTYKIVGEDEADIILGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SPIA AL+G E GD ++V AP G+ YE+L V +I
Sbjct: 121 SCHSPIASALMGNEEGDEVTVKAPKGDIVYEVLSVEYI 158
>gi|323705605|ref|ZP_08117179.1| GreA/GreB family elongation factor [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323535082|gb|EGB24859.1| GreA/GreB family elongation factor [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 157
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 99/155 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T G K+++EL + + +RP + + I +ARA+GDLSEN+EY AK Q E
Sbjct: 1 MGKQVILTYDGLKKLEEELDYLKSVKRPEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+A +E ++ A+VID ++ D+++ G TV + +++ ++ Y IVG EAD + +
Sbjct: 61 GRIATIEAMLRNAQVIDEEDITIDKVSVGCTVKVYDEDFKEEAEYTIVGSTEADPMNNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +AL+GK++GD ISV P G ++L++
Sbjct: 121 SDESPIGKALLGKKVGDTISVEVPAGIIKLKVLEI 155
>gi|222824365|ref|YP_002575939.1| transcription elongation factor GreA [Campylobacter lari RM2100]
gi|254799551|sp|B9KDP9|GREA_CAMLR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|222539586|gb|ACM64687.1| transcription elongation factor GreA [Campylobacter lari RM2100]
Length = 161
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 63/156 (40%), Positives = 106/156 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P++ G++K+++EL ++ ERP++++ I AR++GDL ENAEY AA+E Q EG
Sbjct: 1 MQKEPMSKYGYEKLEKELEHLKKVERPKVVEEIDIARSHGDLKENAEYHAAREKQAFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AEL ++I+RA++ID ++ D + FG+ V + + S + Y IVG E +++ G +S
Sbjct: 61 KIAELGDLISRAQIIDPASYEHDSVKFGSCVVVEDLESEKQSTYTIVGVNEGNLEKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIARA++GK+ GD V P GE +EI+ + +
Sbjct: 121 INSPIARAMLGKKEGDDFKVRLPKGESEFEIISIEY 156
>gi|330830899|ref|YP_004393851.1| transcription elongation factor GreA [Aeromonas veronii B565]
gi|328806035|gb|AEB51234.1| transcription elongation factor GreA [Aeromonas veronii B565]
Length = 153
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 73/153 (47%), Positives = 115/153 (75%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +K+++EL + + E RP+II+AI++AR +GDL ENAEY AA+E Q EGR+ E+
Sbjct: 1 MTVRGAEKLREELDYLKTELRPQIIEAIADAREHGDLKENAEYHAAREQQGFCEGRIQEI 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A+VID++ M+ + R+ FGATV+L++ + ++ Y+IVGD EAD++ L+S++SP
Sbjct: 61 EAKLSNAQVIDVTKMTNNGRVIFGATVTLLKSETEEEVVYRIVGDDEADIKQNLISVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARALIGKE+ D+ V P G+ YE+L+V +I
Sbjct: 121 IARALIGKEVDDVAIVKTPAGDVEYEVLEVAYI 153
>gi|312884007|ref|ZP_07743724.1| transcription elongation factor GreA [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368465|gb|EFP96000.1| transcription elongation factor GreA [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 157
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 115/158 (72%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGELKLRDELDRLLK-LRPKISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FGATV+L++ ++ D+K YQIVGD EAD++SGL+
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNTGKVIFGATVTLIDCDTEDEKTYQIVGDDEADIKSGLI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD + ++ PGG++ +EI V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGDRDFEIDSVQYI 157
>gi|332140822|ref|YP_004426560.1| Transcription elongation factor GreA [Alteromonas macleodii str.
'Deep ecotype']
gi|327550844|gb|AEA97562.1| Transcription elongation factor GreA [Alteromonas macleodii str.
'Deep ecotype']
Length = 153
Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats.
Identities = 66/153 (43%), Positives = 110/153 (71%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G ++ EL + + RPRII++I+EAR +GDL ENAEY AA+E Q+ EGR+ ++
Sbjct: 1 MTARGAQMLRDELNELKTKTRPRIIESIAEAREHGDLKENAEYHAAREQQSFCEGRIQDI 60
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A++ID++ M + ++ FG TV+++ +S ++ Y+IVGD EAD+++ L+S++SP
Sbjct: 61 EGKLSNAQIIDVTKMENTGKVIFGTTVTILNVDSDEETTYRIVGDDEADIKNNLISVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGKEL D +++ P G EI++V +I
Sbjct: 121 IARGLIGKELDDTVTIQTPSGTVEVEIIEVEYI 153
>gi|237745681|ref|ZP_04576161.1| GreA transcription elongation factor [Oxalobacter formigenes
HOxBLS]
gi|229377032|gb|EEO27123.1| GreA transcription elongation factor [Oxalobacter formigenes
HOxBLS]
Length = 158
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 82/158 (51%), Positives = 119/158 (75%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IPVT +G +++EL + ++R +I AI+EAR++GDLSENAEY AAKE Q EG
Sbjct: 1 MSSIPVTVRGAQMMREELHRLKTKDRYEVIAAIAEARSHGDLSENAEYDAAKERQAFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AELE ++ A+VID +T++ + RI F ATV+L + +G+K +YQIVG+ EAD++ +
Sbjct: 61 RIAELETKLSSAQVIDPTTLNTNGRIVFAATVALEDLETGEKVSYQIVGNDEADLKELKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI+SP+ARALIG+E GD++ VNAP G + YEIL+VL+I
Sbjct: 121 SITSPLARALIGREAGDVVEVNAPAGIREYEILEVLFI 158
>gi|307579424|gb|ADN63393.1| transcription elongation factor GreA [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 154
Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats.
Identities = 78/153 (50%), Positives = 112/153 (73%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L
Sbjct: 1 MTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ AEVID++ ++ G +I FGATV+L + + ++ YQIVGD EAD++ GLV+ISSP
Sbjct: 61 EGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDEESRYQIVGDLEADIKQGLVAISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 121 VARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 153
>gi|261344526|ref|ZP_05972170.1| transcription elongation factor GreB [Providencia rustigianii DSM
4541]
gi|282567439|gb|EFB72974.1| transcription elongation factor GreB [Providencia rustigianii DSM
4541]
Length = 161
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G+D + +EL++ +EERPR+ +++SEA A GD SENAEY K+ +
Sbjct: 1 MNKSLLITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + + +++ R+ FGA V L + ++G+ + +++VG E D +
Sbjct: 61 RRIRFLSKRLDQLRIVEPDPRQEGRVFFGAWVKLED-DNGNIRIFRLVGADEFDPAKQWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK + D + V+ PGG+ TY +L++ +
Sbjct: 120 SIDSPVARALIGKRVDDEVVVSTPGGQVTYFVLEISY 156
>gi|251771869|gb|EES52443.1| transcription elongation factor GreA [Leptospirillum
ferrodiazotrophum]
Length = 158
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 64/156 (41%), Positives = 108/156 (69%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G+ K+Q+EL ++ +R + I+ I+EARA+GDLSENAEY AAKE Q+ EG
Sbjct: 1 MQQTPMTKEGYAKLQEELERLKKVDRTKNIQDIAEARAHGDLSENAEYHAAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE ++ A V+ + DR+ FGATV+L ++G++K Y +VG +E D++ G +S
Sbjct: 61 RIKELEAKLSTAIVVSSAHQDRDRVTFGATVTLKNTSTGEEKTYTLVGQEEVDLKRGRLS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++SP+ +AL+G +G+ + + P GE YE+ ++ +
Sbjct: 121 VASPVGKALVGHRVGENVLIRVPAGEIEYEVCRIDY 156
>gi|188575985|ref|YP_001912914.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|289663383|ref|ZP_06484964.1| transcription elongation factor GreA [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289668838|ref|ZP_06489913.1| transcription elongation factor GreA [Xanthomonas campestris pv.
musacearum NCPPB4381]
gi|188520437|gb|ACD58382.1| transcriptional elongation factor [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 154
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 77/153 (50%), Positives = 118/153 (77%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+TSKG ++++EL + +RP +I AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L
Sbjct: 1 MTSKGALRLREELEQLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ AE+IDI+ +S G++I FGATV+L + + ++K YQIVGD EAD++ GL++ISSP
Sbjct: 61 EGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALIGK GD ++++AP G++ YE++ V ++
Sbjct: 121 LARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 153
>gi|15837710|ref|NP_298398.1| transcription elongation factor GreA [Xylella fastidiosa 9a5c]
gi|11279753|pir||D82723 transcription elongation factor XF1108 [imported] - Xylella
fastidiosa (strain 9a5c)
gi|9106063|gb|AAF83918.1|AE003946_9 transcriptional elongation factor [Xylella fastidiosa 9a5c]
Length = 154
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 79/153 (51%), Positives = 113/153 (73%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG +++ EL + +RP II AI+EARA+GDL ENAEY AA+E Q+ EGR+ +L
Sbjct: 1 MTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ AEVID++ ++ G +I FGATV+LV+ + ++ YQIVGD EAD++ GLV+ISSP
Sbjct: 61 EGELSHAEVIDVAKLNAGTKIVFGATVTLVDLETDEESRYQIVGDLEADIKQGLVAISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 121 VARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 153
>gi|299769004|ref|YP_003731030.1| transcription elongation factor GreA [Acinetobacter sp. DR1]
gi|298699092|gb|ADI89657.1| transcription elongation factor GreA [Acinetobacter sp. DR1]
Length = 158
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPEGKIALEKELQHLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A+ ID+ T+ R+ FG TV++ ++ ++K Y+IVGD EAD + +
Sbjct: 61 RIQDIEGKLGAAQEIDVKTLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+ K GD + + P GE YEI+ V ++
Sbjct: 121 SVNSPIARGLLSKSEGDEVKIVTPQGEVEYEIVSVEYL 158
>gi|209364053|ref|YP_001424721.2| transcription elongation factor [Coxiella burnetii Dugway
5J108-111]
gi|212212334|ref|YP_002303270.1| transcription elongation factor [Coxiella burnetii CbuG_Q212]
gi|212218695|ref|YP_002305482.1| transcription elongation factor [Coxiella burnetii CbuK_Q154]
gi|215919153|ref|NP_820273.2| transcription elongation factor [Coxiella burnetii RSA 493]
gi|206584037|gb|AAO90787.2| transcription elongation factor [Coxiella burnetii RSA 493]
gi|207081986|gb|ABS78133.2| transcription elongation factor [Coxiella burnetii Dugway
5J108-111]
gi|212010744|gb|ACJ18125.1| transcription elongation factor [Coxiella burnetii CbuG_Q212]
gi|212012957|gb|ACJ20337.1| transcription elongation factor [Coxiella burnetii CbuK_Q154]
Length = 173
Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 103/159 (64%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M IP+T G K++ EL + ERP++I AI+EARA+GDL ENAEY AA+E Q E
Sbjct: 15 MQTIIPITVNGVTKLRTELETLKTVERPKVIAAIAEARAHGDLKENAEYHAARERQGFIE 74
Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E + ++IDIS + ++ FGATV+L+ + + YQI+G EA+++
Sbjct: 75 GRILEIEAKLANCQIIDISQIPNEGKVIFGATVTLLNLETQTEVTYQIMGVDEANLKENK 134
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SISSP ARA+IGK + D+I V P G YEI+ V ++
Sbjct: 135 ISISSPTARAMIGKYIEDVIEVTTPEGPVEYEIVDVEYL 173
>gi|303248722|ref|ZP_07334975.1| GreA/GreB family elongation factor [Desulfovibrio fructosovorans
JJ]
gi|302489887|gb|EFL49815.1| GreA/GreB family elongation factor [Desulfovibrio fructosovorans
JJ]
Length = 162
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D IP+T +GF ++++EL ++ ERP +I AI EAR GDL ENA Y AA+E Q + E
Sbjct: 1 MDSIPITVQGFKRLERELERLKK-ERPEVILAIKEAREEGDLRENAGYDAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +E+ + R VID++T+ G+++ FGATV + + ++GD K Y ++G EA+ G +S
Sbjct: 60 RINFIESRMPRFNVIDLATLDGEQVIFGATVEIEDVDTGDVKKYTLLGPDEAEPSKGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ +AL+GK GD I V AP G+ YEI+ + +
Sbjct: 120 ILSPVGQALLGKYEGDEIVVEAPRGKINYEIISIAF 155
>gi|262278055|ref|ZP_06055840.1| transcription elongation factor [Acinetobacter calcoaceticus
RUH2202]
gi|262258406|gb|EEY77139.1| transcription elongation factor [Acinetobacter calcoaceticus
RUH2202]
Length = 158
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL+ + ERPRII+AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPEGKIALEKELQHLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + + ID+ T+ R+ FG TV++ ++ ++K Y+IVGD EAD + +
Sbjct: 61 RIQDIEGKLGAVQEIDVKTLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+ K GD + + P GE YEI+ V ++
Sbjct: 121 SVNSPIARGLLSKSEGDEVKIVTPQGEVEYEIVSVEYL 158
>gi|328957198|ref|YP_004374584.1| transcription elongation factor GreA [Carnobacterium sp. 17-4]
gi|328673522|gb|AEB29568.1| transcription elongation factor GreA [Carnobacterium sp. 17-4]
Length = 157
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M++K+ P+T G K+++EL + + +R I++ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MIEKVYPMTLDGKQKLEEELEYLKTVKRKDIVERIKIARSFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +EN++ +E+ID S + D ++ G V+ +E GD++ Y IVG EAD +GL
Sbjct: 61 EGRVTTIENMLRFSEIIDNSNTATDEVSLGRKVTFIELPDGDEEEYTIVGSAEADPFNGL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK++G ++ PGG+ I+++
Sbjct: 121 ISNDSPIAKALMGKKVGSEVTFGTPGGDMFVRIVEIS 157
>gi|237752951|ref|ZP_04583431.1| transcription elongation factor GreA [Helicobacter winghamensis
ATCC BAA-430]
gi|229375218|gb|EEO25309.1| transcription elongation factor GreA [Helicobacter winghamensis
ATCC BAA-430]
Length = 159
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 99/152 (65%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++K+ EL+ ++ ERP I I AR +GDL ENAEY AA+E Q + R+ E
Sbjct: 3 PMTEYGYNKLITELKNLKEVERPNNIIEIDTAREHGDLKENAEYHAARERQLFLDARINE 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++ A VID +T+ D+++FG+T++L + ++ + Y IVG E++ + GL+S SP
Sbjct: 63 LTQLVAEARVIDPATLPHDKVSFGSTITLEDLDTEENYTYTIVGATESNPEKGLISYHSP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ L+GK +GD ++V P G YEIL++ +
Sbjct: 123 LAKQLLGKIVGDEVAVTLPKGRVDYEILEITY 154
>gi|167626378|ref|YP_001676878.1| transcription elongation factor GreA [Francisella philomiragia
subsp. philomiragia ATCC 25017]
gi|241668809|ref|ZP_04756387.1| GreA/GreB family elongation factor [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254877341|ref|ZP_05250051.1| transcriptional elongation factor [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|259647641|sp|B0TYL2|GREA_FRAP2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|167596379|gb|ABZ86377.1| GreA/GreB family elongation factor [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|254843362|gb|EET21776.1| transcriptional elongation factor [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 160
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 67/155 (43%), Positives = 111/155 (71%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR+
Sbjct: 5 RVPMTPAGEQALRAELSRLKKTERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGRI 64
Query: 64 AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E+ ++ A+VID++ + + + FGATV+++ ++ ++ YQIVG+ EAD+ + +S+
Sbjct: 65 KDIESKLSNAQVIDVTKLQANGMVIFGATVTVINVDTEEETTYQIVGEDEADIDNHKISV 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+P+ARALI KE+GD I ++ P G+ TYEI+ V +
Sbjct: 125 VAPLARALIKKEVGDEIILDTPKGKVTYEIVDVEY 159
>gi|323495923|ref|ZP_08100991.1| transcription elongation factor GreA [Vibrio sinaloensis DSM 21326]
gi|323319139|gb|EGA72082.1| transcription elongation factor GreA [Vibrio sinaloensis DSM 21326]
Length = 157
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K+++EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQKLREELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD + ++ PGGE+ +EI V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGERDFEIDSVEYI 157
>gi|304315887|ref|YP_003851032.1| transcription elongation factor GreA [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777389|gb|ADL67948.1| transcription elongation factor GreA [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 157
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 98/155 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T G K+++EL + + +RP + + I +ARA+GDLSEN+EY AK Q E
Sbjct: 1 MGKQVILTYDGLKKLEEELDYLKSVKRPEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+A +E ++ A+VID ++ D+++ G TV + ++ ++ Y IVG EAD + +
Sbjct: 61 GRIATIEAMLRNAQVIDEEDITIDKVSVGCTVKVYDEEFKEESEYTIVGSTEADPMNNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +ALIGK++GD +SV P G ++L++
Sbjct: 121 SDESPIGKALIGKKVGDSVSVEVPAGIIKLKVLEI 155
>gi|152998029|ref|YP_001342864.1| transcription elongation factor GreA [Marinomonas sp. MWYL1]
gi|150838953|gb|ABR72929.1| transcription elongation factor GreA [Marinomonas sp. MWYL1]
Length = 158
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T +G ++++EL + RPR+I I+ AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKKVPMTVEGEARLREELNHLKTVVRPRVIADIATAREHGDLKENAEYHAAREEQGFAEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + ++VID+ + ++ FG TV+L ++ + Y+IVGD EADV+ +
Sbjct: 61 RIKEIEGKLADSQVIDVKALPASSKVIFGTTVTLFNVDTEETVTYKIVGDDEADVKEKKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S +SPIA+A+IGKE GD +++ P GE YEI +V ++
Sbjct: 121 SYASPIAKAIIGKEEGDEVAIQVPSGEVVYEIEKVEYL 158
>gi|118594565|ref|ZP_01551912.1| GreA/GreB family elongation factor [Methylophilales bacterium
HTCC2181]
gi|118440343|gb|EAV46970.1| GreA/GreB family elongation factor [Methylophilales bacterium
HTCC2181]
Length = 158
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 115/158 (72%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +I +T G + +++EL+ + +RP II+AI+EARA GDLSENAEY++AKE Q EG
Sbjct: 1 MAQIHMTRNGLEALKKELQQLKSVDRPAIIEAIAEARAQGDLSENAEYESAKEKQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A++E I++AEVID + + R FGAT+ L + ++ K +QIVGD E+ ++ +
Sbjct: 61 RLADIEAKISQAEVIDPANLKAEGRCVFGATIELEDLDTEKKSTFQIVGDDESSIKDNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI+SP+A+ALIGKE GD++ +PGG K+++IL+VL+I
Sbjct: 121 SINSPLAKALIGKEAGDVVEFESPGGIKSFDILRVLYI 158
>gi|58337782|ref|YP_194367.1| transcriptional elongation factor [Lactobacillus acidophilus NCFM]
gi|227904432|ref|ZP_04022237.1| transcriptional elongation factor [Lactobacillus acidophilus ATCC
4796]
gi|58255099|gb|AAV43336.1| transcriptional elongation factor [Lactobacillus acidophilus NCFM]
gi|227867807|gb|EEJ75228.1| transcriptional elongation factor [Lactobacillus acidophilus ATCC
4796]
Length = 158
Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T++G +K++ EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MPEKSYPMTAEGKEKLEAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E ++ A+V+D ++ + ++ G T++ E + D + Y IVG E+D +G
Sbjct: 61 EDRIAQVEEMLKYAQVVDAESVDPNEVSVGKTITYTEVGTDDPETYTIVGSDESDPLNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK+ G+ +S+ PGG+ I +V
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGQFDVVINKVE 157
>gi|315303245|ref|ZP_07873892.1| transcription elongation factor GreA [Listeria ivanovii FSL F6-596]
gi|313628385|gb|EFR96871.1| transcription elongation factor GreA [Listeria ivanovii FSL F6-596]
Length = 175
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 55/152 (36%), Positives = 92/152 (60%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+
Sbjct: 22 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 81
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+EN+I A++ID + + G TV+ VE G ++ Y IVG EAD G +S S
Sbjct: 82 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFVELPDGVEETYTIVGSAEADPFEGKISNDS 141
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA+ L+G + G+ +++ P G+ + +I ++
Sbjct: 142 PIAKGLLGHKEGEEVTIQTPAGDMSVKIQKIT 173
>gi|167036744|ref|YP_001664322.1| transcription elongation factor GreA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167039463|ref|YP_001662448.1| transcription elongation factor GreA [Thermoanaerobacter sp. X514]
gi|256751867|ref|ZP_05492739.1| transcription elongation factor GreA [Thermoanaerobacter
ethanolicus CCSD1]
gi|300915431|ref|ZP_07132744.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X561]
gi|307266258|ref|ZP_07547799.1| GreA/GreB family elongation factor [Thermoanaerobacter wiegelii
Rt8.B1]
gi|307725211|ref|YP_003904962.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X513]
gi|320115167|ref|YP_004185326.1| transcription elongation factor GreA [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|326391992|ref|ZP_08213492.1| transcription elongation factor GreA [Thermoanaerobacter
ethanolicus JW 200]
gi|238687609|sp|B0K5B9|GREA_THEPX RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238687705|sp|B0KCE3|GREA_THEP3 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166853703|gb|ABY92112.1| transcription elongation factor GreA [Thermoanaerobacter sp. X514]
gi|166855578|gb|ABY93986.1| transcription elongation factor GreA [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256749274|gb|EEU62306.1| transcription elongation factor GreA [Thermoanaerobacter
ethanolicus CCSD1]
gi|300888491|gb|EFK83640.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X561]
gi|306918708|gb|EFN48941.1| GreA/GreB family elongation factor [Thermoanaerobacter wiegelii
Rt8.B1]
gi|307582272|gb|ADN55671.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X513]
gi|319928258|gb|ADV78943.1| transcription elongation factor GreA [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|325991960|gb|EGD50452.1| transcription elongation factor GreA [Thermoanaerobacter
ethanolicus JW 200]
Length = 157
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 98/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G K+++EL + + +R + + I +ARA+GDLSEN+EY AK Q E
Sbjct: 1 MSKPVILTYEGLKKLEEELEYLKTVKRAEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+A LE ++ A+VID + D+++ G TV + +++ ++ Y IVG EAD + +
Sbjct: 61 GRIATLEAMLKNAKVIDEEDIKLDQVSIGCTVKVYDESYNEEVEYTIVGSAEADPMNNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SPI +AL+GK++GD++SV P G +IL++
Sbjct: 121 SDESPIGKALLGKKVGDVVSVEVPAGIIKLKILEIR 156
>gi|138896117|ref|YP_001126570.1| transcription elongation factor GreA [Geobacillus
thermodenitrificans NG80-2]
gi|196249010|ref|ZP_03147710.1| transcription elongation factor GreA [Geobacillus sp. G11MC16]
gi|166200664|sp|A4IR71|GREA_GEOTN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|134267630|gb|ABO67825.1| Transcription elongation factor [Geobacillus thermodenitrificans
NG80-2]
gi|196211886|gb|EDY06645.1| transcription elongation factor GreA [Geobacillus sp. G11MC16]
Length = 158
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 96/154 (62%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q E R
Sbjct: 5 KQYPMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVESR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LE +I A +I+ + D ++ G +V+ +E G+++ Y IVG EAD G +S
Sbjct: 65 IQMLETMIRNAVIIEEDKENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISN 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPIA++LIG +GD ++V PGGE +I+ V
Sbjct: 125 DSPIAKSLIGHRVGDEVTVQTPGGEMLVKIVAVK 158
>gi|319787362|ref|YP_004146837.1| transcription elongation factor GreA [Pseudoxanthomonas suwonensis
11-1]
gi|317465874|gb|ADV27606.1| transcription elongation factor GreA [Pseudoxanthomonas suwonensis
11-1]
Length = 154
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 73/153 (47%), Positives = 114/153 (74%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG ++++EL + +RP +I AI+EAR +GDL ENAEY AA+E Q EGR+ +L
Sbjct: 1 MTLKGAQRLREELDHLKTVKRPEVIAAIAEARGHGDLKENAEYHAAREQQGFIEGRIKQL 60
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E+ ++ A++ID++ ++ G ++ FGATV+L + + ++ YQIVGD EAD++ GL++ISSP
Sbjct: 61 ESELSHADLIDVTKLNAGSKVVFGATVTLADVETDEEVRYQIVGDLEADIKQGLIAISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ARALIGKE GD I ++AP G++ YEI+ V ++
Sbjct: 121 VARALIGKEEGDAIVIDAPAGQREYEIVSVEYL 153
>gi|163790351|ref|ZP_02184783.1| transcription elongation factor GreA [Carnobacterium sp. AT7]
gi|159874422|gb|EDP68494.1| transcription elongation factor GreA [Carnobacterium sp. AT7]
Length = 157
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M++K+ P+T G K+++EL + + +R I++ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MIEKVYPMTLDGKKKLEEELEYLKTVKRKDIVERIKIARSFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +EN++ +E+ID S + D ++ G V+ +E GD++ Y IVG EAD GL
Sbjct: 61 EGRVTTIENMLRFSEIIDNSKTAADEVSLGRKVTFIELPDGDEEEYTIVGSAEADPFKGL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK++G ++ PGG+ +I+++
Sbjct: 121 ISNDSPIAKALMGKKVGSEVTFATPGGDMFVKIVEIS 157
>gi|256829409|ref|YP_003158137.1| transcription elongation factor GreA [Desulfomicrobium baculatum
DSM 4028]
gi|256578585|gb|ACU89721.1| transcription elongation factor GreA [Desulfomicrobium baculatum
DSM 4028]
Length = 162
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 107/157 (68%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++IP++ +GF ++++EL ++ ERP II+AI EAR GDL ENA Y AA+E Q + E
Sbjct: 1 MNRIPISVEGFKRLEKELEDLKK-ERPAIIQAIKEAREEGDLRENAGYDAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ +E+ + R EVIDI T+ DR FGATV++ + + ++K Y ++G EAD G +S
Sbjct: 60 RISHIESRMIRFEVIDIDTLQSDRAVFGATVTVEDVETEERKTYTLLGADEADHTKGTIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ RAL+GK+ GD ISV P G YE++ V ++
Sbjct: 120 IESPVGRALLGKQEGDEISVQVPKGRVDYEVISVSFL 156
>gi|56421082|ref|YP_148400.1| transcription elongation factor GreA [Geobacillus kaustophilus
HTA426]
gi|261418437|ref|YP_003252119.1| transcription elongation factor GreA [Geobacillus sp. Y412MC61]
gi|297529289|ref|YP_003670564.1| GreA/GreB family elongation factor [Geobacillus sp. C56-T3]
gi|319767603|ref|YP_004133104.1| transcription elongation factor GreA [Geobacillus sp. Y412MC52]
gi|81346788|sp|Q5KWV4|GREA_GEOKA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|56380924|dbj|BAD76832.1| transcription elongation factor [Geobacillus kaustophilus HTA426]
gi|261374894|gb|ACX77637.1| transcription elongation factor GreA [Geobacillus sp. Y412MC61]
gi|297252541|gb|ADI25987.1| GreA/GreB family elongation factor [Geobacillus sp. C56-T3]
gi|317112469|gb|ADU94961.1| transcription elongation factor GreA [Geobacillus sp. Y412MC52]
Length = 158
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 98/154 (63%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q E R
Sbjct: 5 KQYPMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVESR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LEN+I A +I+ + D ++ G +V+ +E G+++ Y IVG EAD G +S
Sbjct: 65 IQMLENMIRNAVIIEEDKENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISN 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPIA++L+G+ +GD ++V PGGE +I+ V
Sbjct: 125 DSPIAKSLLGRRVGDEVTVQTPGGEMLVKIVAVK 158
>gi|294142073|ref|YP_003558051.1| transcription elongation factor GreA [Shewanella violacea DSS12]
gi|293328542|dbj|BAJ03273.1| transcription elongation factor GreA [Shewanella violacea DSS12]
Length = 158
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 108/158 (68%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G +++++EL + E+RP I +AI AR GDL ENAEY AA+E Q + E
Sbjct: 1 MNKVPMTVVGAEQLRKELTHLKFEQRPSITQAIGTARELGDLKENAEYHAAREEQGICEA 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ ++ID++ M + RI FG TV+++ + ++ Y+IVG+ EA+++ L+
Sbjct: 61 RIRDIEGKLSNVQIIDVTKMENNGRIIFGTTVTILNVETEEESTYRIVGEDEANIKDNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK L D +++ PGG YEI+ V +I
Sbjct: 121 SVTSPIARGLVGKNLDDEVNIQTPGGITEYEIIAVKYI 158
>gi|289579209|ref|YP_003477836.1| GreA/GreB family elongation factor [Thermoanaerobacter italicus
Ab9]
gi|297545389|ref|YP_003677691.1| GreA/GreB family elongation factor [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|289528922|gb|ADD03274.1| GreA/GreB family elongation factor [Thermoanaerobacter italicus
Ab9]
gi|296843164|gb|ADH61680.1| GreA/GreB family elongation factor [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 157
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 98/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G K+++EL + + +R + + I +ARA+GDLSEN+EY AK Q E
Sbjct: 1 MSKPVILTYEGLKKLEEELEYLKTVKRAEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+A LE ++ A+VID + D+++ G TV + +++ ++ Y IVG EAD + +
Sbjct: 61 GRIATLEAMLKNAKVIDEEDIKLDQVSIGCTVKVYDESYNEEVEYTIVGSAEADPMNNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SPI +AL+GK++GD++SV P G +IL++
Sbjct: 121 SDESPIGKALLGKKVGDVVSVEVPAGIINLKILEIR 156
>gi|163750815|ref|ZP_02158050.1| transcription elongation factor GreA [Shewanella benthica KT99]
gi|161329510|gb|EDQ00504.1| transcription elongation factor GreA [Shewanella benthica KT99]
Length = 158
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G +++++EL + E+RP I +AI AR GDL ENAEY AA+E Q + E
Sbjct: 1 MNKVPMTVVGAEQLRKELTHLKFEQRPSITQAIGTARELGDLKENAEYHAAREEQGICEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ ++ID++ M RI FG TV+++ + D+ Y+IVG+ EA+++ L+
Sbjct: 61 RIRDIEGKLSNVQIIDVTKMENSGRIIFGTTVTILNVETEDESTYRIVGEDEANIKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GK L D +++ PGG YEI+ V +I
Sbjct: 121 SVTSPIARGLVGKNLDDEVNIQTPGGTTDYEIIAVEYI 158
>gi|89072566|ref|ZP_01159138.1| transcription elongation factor GreA [Photobacterium sp. SKA34]
gi|90580532|ref|ZP_01236337.1| transcription elongation factor GreA [Vibrio angustum S14]
gi|89051670|gb|EAR57123.1| transcription elongation factor GreA [Photobacterium sp. SKA34]
gi|90438190|gb|EAS63376.1| transcription elongation factor GreA [Photobacterium angustum S14]
Length = 157
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 111/158 (70%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K++ EL + RP I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGEQKLRSELEVLLK-RRPLISQAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A++ID+ TM ++ FG T++L++ ++ ++ Y IVGD EA+++ L+
Sbjct: 60 QIRDIEYKLSVAQIIDVKTMPNTGKVIFGTTITLLDLDTDNEVTYCIVGDDEANIKENLI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +++ PGG+K +EI++V +I
Sbjct: 120 SVNSPIARGLIGKMEGDEVAITTPGGQKEFEIVEVKYI 157
>gi|57339826|gb|AAW49900.1| hypothetical protein FTT1313 [synthetic construct]
Length = 195
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR
Sbjct: 30 DRVPMTPAGEQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 89
Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S
Sbjct: 90 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 149
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ +P+ARALI KE GD I+++ P G+ TYEI+ V +
Sbjct: 150 VVAPLARALIKKEEGDEITLDTPKGKVTYEIVAVEY 185
>gi|295698488|ref|YP_003603143.1| transcription elongation factor [Candidatus Riesia pediculicola
USDA]
gi|291157052|gb|ADD79497.1| transcription elongation factor [Candidatus Riesia pediculicola
USDA]
Length = 162
Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ ++P+T G K+++EL + + +RP II ++ EAR +GDL ENAEYQAA+E Q+ EG
Sbjct: 1 MKRVPMTLNGEKKLRKELEFLKNVKRPEIITSLIEARKHGDLKENAEYQAAREEQSFYEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A VID++ + + + FG+TV+L + S YQIVG+ EAD + L+
Sbjct: 61 RIKEIERKLLNAHVIDVTQLKEKNHVTFGSTVTLKDNISEKISIYQIVGEDEADFKENLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SPIA+ +IGK+ GD++ +N P G+ Y IL+V +I
Sbjct: 121 SFCSPIAKGIIGKKEGDVVKINTPNGKAIYTILEVKYI 158
>gi|254369654|ref|ZP_04985664.1| transcriptional elongation factor [Francisella tularensis subsp.
holarctica FSC022]
gi|157122613|gb|EDO66742.1| transcriptional elongation factor [Francisella tularensis subsp.
holarctica FSC022]
Length = 160
Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR
Sbjct: 4 DRVPMTPAGKQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63
Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S
Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ +P+ARALI KE GD I+++ P G+ TYEI+ V +
Sbjct: 124 VVAPLARALIKKEEGDEITLDTPKGKVTYEIVAVEY 159
>gi|298529319|ref|ZP_07016722.1| transcription elongation factor GreA [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510755|gb|EFI34658.1| transcription elongation factor GreA [Desulfonatronospira
thiodismutans ASO3-1]
Length = 165
Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D IP++ +GF +++QEL Q ERP +I+AI EAR GDL ENA Y AA+E Q L E
Sbjct: 1 MSDSIPISEEGFARLKQELEKLQA-ERPEVIQAIKEAREEGDLKENAGYDAARERQGLLE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A++ + + +ID+ TM G+++ +GATV + ++G+ K Y ++G E D +
Sbjct: 60 AKIAQITSRMPMFNIIDLDTMDGNKVCYGATVEIENVDTGEVKKYTLLGPDETDFVPDSL 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+ SP+ARAL+G+E+GD VNAP G+ YEIL + +
Sbjct: 120 SVFSPLARALMGREVGDETVVNAPKGKIEYEILDIKF 156
>gi|220904317|ref|YP_002479629.1| transcription elongation factor GreA [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|254799558|sp|B8IZM4|GREA_DESDA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|219868616|gb|ACL48951.1| transcription elongation factor GreA [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 162
Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats.
Identities = 70/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP++ +G+ +++EL + ERP II+AI EAR GDL ENA Y AA+E Q + E
Sbjct: 1 MTSIPISVQGYKALEEELARLKS-ERPEIIQAIKEAREEGDLRENAGYDAARERQGMAEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +E+ + +VID+ T+SGD++ FGATV L + +SG+ K Y I+G EAD G +S
Sbjct: 60 RIKYIESRMALYQVIDLDTLSGDKVIFGATVDLEDVDSGEAKTYTILGPDEADPSKGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ +AL+G+E GD +SV P G TYEI+ V +
Sbjct: 120 FLSPVGQALLGREEGDEVSVEIPRGRVTYEIIGVSF 155
>gi|239827818|ref|YP_002950442.1| transcription elongation factor GreA [Geobacillus sp. WCH70]
gi|239808111|gb|ACS25176.1| transcription elongation factor GreA [Geobacillus sp. WCH70]
Length = 159
Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats.
Identities = 61/159 (38%), Positives = 101/159 (63%), Gaps = 3/159 (1%)
Query: 1 MV---DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M+ + P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q
Sbjct: 1 MMANEKQFPMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQA 60
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
E R+ LEN+I A +I+ T + D ++ G +V+ +E G+++ Y IVG EAD
Sbjct: 61 FVEARIQTLENMIRNAVIIEEDTENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFE 120
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
G +S SPIA++L+G+ +G+ ++V PGGE +I+ V
Sbjct: 121 GKISNDSPIAKSLLGRRVGEEVTVQTPGGEMLVKIVAVK 159
>gi|78357555|ref|YP_389004.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78219960|gb|ABB39309.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 235
Score = 166 bits (422), Expect = 6e-40, Method: Composition-based stats.
Identities = 66/156 (42%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP++ +GF+ ++++L +Q ERP +I+AI EAR GDLSENA Y AA+E Q + E
Sbjct: 73 MSSIPISVEGFELVKRDLERLKQ-ERPAVIQAIKEAREEGDLSENAGYDAARERQGMLEA 131
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +E+ + R VID+ T+ G+R+ +GAT+ L + +G+ + Y +VG E D G +S
Sbjct: 132 RIGNIESRMARFNVIDMRTLGGERVTYGATIELEDLETGEMRVYTLVGPDETDYVKGSIS 191
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+A+A++GKE GD + V+AP G+ YEI+ V +
Sbjct: 192 VLSPVAKAVLGKEEGDEVVVDAPRGKIHYEIVSVSF 227
>gi|52081213|ref|YP_080004.1| transcription elongation factor GreA [Bacillus licheniformis ATCC
14580]
gi|52786594|ref|YP_092423.1| transcription elongation factor GreA [Bacillus licheniformis ATCC
14580]
gi|319644819|ref|ZP_07999052.1| transcription elongation factor greA [Bacillus sp. BT1B_CT2]
gi|81384952|sp|Q65GT4|GREA_BACLD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|52004424|gb|AAU24366.1| transcription elongation factor [Bacillus licheniformis ATCC 14580]
gi|52349096|gb|AAU41730.1| GreA [Bacillus licheniformis ATCC 14580]
gi|317392628|gb|EFV73422.1| transcription elongation factor greA [Bacillus sp. BT1B_CT2]
Length = 158
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 102/158 (64%), Gaps = 2/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + P+T G K+++EL + + +R +++ I AR++GDLSEN+EY +AKE Q
Sbjct: 1 MAQEKVFPMTETGKKKLEEELEYLKTVKRKEVVERIKVARSFGDLSENSEYDSAKEEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ L+N+I A++I+ + D ++ G TV+ E G++++Y IVG EAD G
Sbjct: 61 VEGRITTLDNMIRNAKIIEDDGANSDIVSLGKTVTFTELPDGEEESYTIVGSAEADPFEG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA++L+GK++GD ++V PGGE +I+++
Sbjct: 121 KISNDSPIAKSLLGKQVGDEVTVQTPGGEMLVKIVKIS 158
>gi|212638597|ref|YP_002315117.1| transcription elongation factor GreA [Anoxybacillus flavithermus
WK1]
gi|212560077|gb|ACJ33132.1| Transcription elongation factor GreA [Anoxybacillus flavithermus
WK1]
Length = 161
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 63/156 (40%), Positives = 102/156 (65%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + P+T G +K++QEL + + +R +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 6 MEKEYPMTKAGKEKLEQELEYLKTVKRKEVVERIQIARSFGDLSENSEYDAAKDEQAFVE 65
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LEN+I A++I+ S D ++ G TV+ VE G++++Y IVG EAD G +
Sbjct: 66 SRIQMLENMIRNAKIIEEDLESTDIVSLGRTVTFVELPDGEEESYTIVGSAEADPFEGKI 125
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SPIA++LIG+ +G+ ++V+ PGG+ +I+ V
Sbjct: 126 SNDSPIAKSLIGRRVGEEVTVHTPGGDMVVKIIAVK 161
>gi|313618851|gb|EFR90728.1| transcription elongation factor GreA [Listeria innocua FSL S4-378]
Length = 175
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 54/152 (35%), Positives = 93/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+
Sbjct: 22 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 81
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S S
Sbjct: 82 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 141
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA+ L+G + G+ +++ P G+ + +I ++
Sbjct: 142 PIAKGLLGHKEGEEVTIQTPAGDMSVKIEKIT 173
>gi|289434776|ref|YP_003464648.1| transcription elongation factor GreA [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289171020|emb|CBH27562.1| transcription elongation factor GreA [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|313637769|gb|EFS03123.1| transcription elongation factor GreA [Listeria seeligeri FSL
S4-171]
Length = 160
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 55/152 (36%), Positives = 92/152 (60%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+
Sbjct: 7 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+EN+I A++ID + + G TV+ VE G+++ Y IVG EAD G +S S
Sbjct: 67 TIENMIRNAQIIDAAESHNGLVTLGNTVTFVELPDGEEETYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA+ L+G + G+ +++ P G+ +I ++
Sbjct: 127 PIAKGLLGHKEGEEVTIQTPAGDMNVKIEKIT 158
>gi|46581647|ref|YP_012455.1| transcription elongation factor GreA [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601195|ref|YP_965595.1| transcription elongation factor GreA [Desulfovibrio vulgaris DP4]
gi|81566039|sp|Q725M4|GREA_DESVH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166200661|sp|A1V9Q2|GREA_DESVV RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|46451070|gb|AAS97715.1| transcription elongation factor GreA [Desulfovibrio vulgaris str.
Hildenborough]
gi|120561424|gb|ABM27168.1| transcription elongation factor GreA [Desulfovibrio vulgaris DP4]
gi|311235288|gb|ADP88142.1| GreA/GreB family elongation factor [Desulfovibrio vulgaris RCH1]
Length = 163
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP++ +GF ++++EL ++ ERP +I+AI EAR GDLSENA Y AA+E Q + E
Sbjct: 1 MSSIPISVEGFKQLEKELDRLKK-ERPGVIQAIKEAREEGDLSENAGYDAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +E+ + + VID+ T+SGD++ FGATV + + SG++K Y ++G EAD G +S
Sbjct: 60 RIKYIESRMAQFNVIDLDTISGDKVMFGATVKIEDLESGEEKEYTLLGPDEADYAKGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SP+ARA++GKE GD I V+AP G+ YEI+ + ++
Sbjct: 120 VQSPVARAMLGKEEGDEIVVDAPRGKIHYEIVSIRFL 156
>gi|254284149|ref|ZP_04959117.1| GreA/GreB family elongation factor [gamma proteobacterium NOR51-B]
gi|219680352|gb|EED36701.1| GreA/GreB family elongation factor [gamma proteobacterium NOR51-B]
Length = 153
Score = 166 bits (422), Expect = 7e-40, Method: Composition-based stats.
Identities = 69/153 (45%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G +++EL ++ +RPRI +AI+EAR +GDL ENAEY AA+E Q+ EGR+ ++
Sbjct: 1 MTAEGERALREELERLKKVDRPRITQAIAEAREHGDLKENAEYHAAREQQSFAEGRIKDI 60
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E+ ++ A+VID+S + ++ FG TV L+ + Y+IVG+ EADV++ ++S+ SP
Sbjct: 61 EHKLSHAQVIDVSAIAHTGKVIFGTTVDLINLDDDSTVTYRIVGEDEADVRNNMISVGSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARAL+GK GD + V APGG+ YEI QV +
Sbjct: 121 IARALVGKSEGDEVVVRAPGGDICYEIDQVRHV 153
>gi|295425284|ref|ZP_06817987.1| transcription elongation factor GreA [Lactobacillus amylolyticus
DSM 11664]
gi|295065060|gb|EFG55965.1| transcription elongation factor GreA [Lactobacillus amylolyticus
DSM 11664]
Length = 158
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T++G +K++ ELR + +RP +IK I AR+YGDLSEN+EY AAK+ Q+
Sbjct: 1 MAEKSFPMTAEGKEKLEAELRDLKLVKRPEVIKRIKVARSYGDLSENSEYDAAKDEQSHV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E ++ A+V+D ++ + +A G TV+ E D + Y IVG E+D +G
Sbjct: 61 EDRIAQVEEMLKYAQVVDADSVDPNEVAVGKTVTYTEVGEDDPETYTIVGSDESDPLNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK+ G+ +S+ PGG+ I +V
Sbjct: 121 ISNDSPIAQALIGKKKGETVSITTPGGKFDVVINKVE 157
>gi|123444179|ref|YP_001008149.1| transcription elongation factor GreB [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122091140|emb|CAL14023.1| transcription elongation factor [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 165
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ +
Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V + SG+++ +++VG E D +
Sbjct: 61 RRVRFLTKRLEVLKIVDPDPRQEGKVYFGAWVRVEN-ESGEQRIFRLVGPDEFDPAKKWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D ++V P GE TY IL + +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILDIRY 156
>gi|116872925|ref|YP_849706.1| transcription elongation factor GreA [Listeria welshimeri serovar
6b str. SLCC5334]
gi|123458483|sp|A0AIU5|GREA_LISW6 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116741803|emb|CAK20927.1| transcription elongation factor GreA [Listeria welshimeri serovar
6b str. SLCC5334]
Length = 160
Score = 166 bits (422), Expect = 8e-40, Method: Composition-based stats.
Identities = 54/152 (35%), Positives = 93/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+
Sbjct: 7 FPMTLEGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S S
Sbjct: 67 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA+ L+G + G+ +++ P G+ +I ++
Sbjct: 127 PIAKGLLGHKEGEEVTIQTPAGDMNVKIEKIT 158
>gi|254516627|ref|ZP_05128686.1| GreA/GreB family elongation factor [gamma proteobacterium NOR5-3]
gi|219675050|gb|EED31417.1| GreA/GreB family elongation factor [gamma proteobacterium NOR5-3]
Length = 154
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 71/153 (46%), Positives = 109/153 (71%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G ++ EL ++ +RPRI +AI+EAR +GDL ENAEY AA+E Q+ EGR+ ++
Sbjct: 1 MTAQGEKALRAELEQLKKVDRPRISQAIAEAREHGDLKENAEYHAAREQQSFAEGRIMDI 60
Query: 67 ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A+VID++++ ++ FG TV L+ + + Y+IVGD EAD + L+S++SP
Sbjct: 61 EGKLSHAQVIDVTSIPCTGKVIFGVTVDLINVENDESVVYRIVGDDEADARQNLISVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARALIGKE GD++ V APGG++ YEI QV +
Sbjct: 121 IARALIGKEEGDVVVVRAPGGDREYEIDQVRHL 153
>gi|156975672|ref|YP_001446579.1| transcription elongation factor GreA [Vibrio harveyi ATCC BAA-1116]
gi|156527266|gb|ABU72352.1| hypothetical protein VIBHAR_03407 [Vibrio harveyi ATCC BAA-1116]
Length = 157
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 112/158 (70%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G ++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQLLRTELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID+++M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTSMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIAR LIGK GD + + PGG K +EI V +I
Sbjct: 120 SISSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157
>gi|323466134|gb|ADX69821.1| Transcription elongation factor [Lactobacillus helveticus H10]
Length = 158
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E+++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G
Sbjct: 61 EDRIAQVEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDAETYTIVGSDESDPLNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK+ G+ +S+ PG + I V
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGSQFDVVINNVE 157
>gi|318607818|emb|CBY29316.1| transcription elongation factor GreB [Yersinia enterocolitica
subsp. palearctica Y11]
Length = 165
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ +
Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V + SG+++ +++VG E D +
Sbjct: 61 RRVRFLTKRLEVLKIVDPDPRQEGKVYFGAWVQVEN-ESGEQRIFRLVGPDEFDPAKKWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D ++V P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEVTYWILEIRY 156
>gi|90416147|ref|ZP_01224079.1| transcription elongation factor GreA [marine gamma proteobacterium
HTCC2207]
gi|90331872|gb|EAS47086.1| transcription elongation factor GreA [marine gamma proteobacterium
HTCC2207]
Length = 158
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++EL +E RP II+AI+ AR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MQKAPMTVEGEIALREELHHLIKEVRPTIIEAIATAREHGDLKENAEYHAAREQQSFTEG 60
Query: 62 RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ +VIDI+ + GDR+ FG TV+++ + Y+IVGD EADV++ +
Sbjct: 61 RIQDIEGKLSNIQVIDINKIPHGDRVVFGTTVTIINLDLDKTVTYKIVGDDEADVKACKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SPIARAL+GKE+ +++ V AP G+ YEI V +I
Sbjct: 121 SYQSPIARALMGKEISEVVVVKAPSGDVEYEIDNVEFI 158
>gi|319651649|ref|ZP_08005776.1| transcription elongation factor GreA [Bacillus sp. 2_A_57_CT2]
gi|317396716|gb|EFV77427.1| transcription elongation factor GreA [Bacillus sp. 2_A_57_CT2]
Length = 158
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 65/152 (42%), Positives = 98/152 (64%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G +K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q EGR+
Sbjct: 7 FPMTQAGKEKLEQELEYLKSVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LEN+I A++I M+GD + G +V+ VE GD++ Y IVG EAD G +S S
Sbjct: 67 TLENMIRNAKIIQEEEMAGDIVGLGRSVTFVELPDGDEETYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++LIG+ +GD ++V PGGE I+ +
Sbjct: 127 PIAKSLIGRTVGDEVTVQTPGGEMNVRIVSIK 158
>gi|260775433|ref|ZP_05884330.1| transcription elongation factor GreA [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608614|gb|EEX34779.1| transcription elongation factor GreA [Vibrio coralliilyticus ATCC
BAA-450]
Length = 157
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 68/158 (43%), Positives = 115/158 (72%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K+++EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGEQKLREELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR L+GK GD + ++ PGG++ +EI V ++
Sbjct: 120 SVSSPIARGLVGKMEGDEVVISTPGGDRDFEIDSVEYV 157
>gi|90022372|ref|YP_528199.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40]
gi|89951972|gb|ABD81987.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40]
Length = 160
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 73/156 (46%), Positives = 104/156 (66%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T G +++EL ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q EGR+
Sbjct: 5 KYPMTVAGELALREELERLKKVDRPRIVQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 64
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E+E ++ A+VID+ T+ ++ FG TV L+ + + Y IVG+ EA ++ +S+
Sbjct: 65 QEIEAKLSNAQVIDVKTIPHSGKVIFGTTVDLINVETDEAITYTIVGEDEASIKLNKISV 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIARALIGKE GD+ V APGGE YEI V I
Sbjct: 125 TSPIARALIGKEEGDVAVVRAPGGEIEYEIDSVKHI 160
>gi|299822858|ref|ZP_07054744.1| transcription elongation factor GreA [Listeria grayi DSM 20601]
gi|299816387|gb|EFI83625.1| transcription elongation factor GreA [Listeria grayi DSM 20601]
Length = 168
Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats.
Identities = 62/152 (40%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + +R +++ I AR +GDLSEN+EY +AK+ Q EGR+
Sbjct: 15 FPMTLEGKAKLETELHELKTVKRKEVVERIKIARGFGDLSENSEYDSAKDEQAFVEGRIT 74
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LEN+I A++ID S D + G TV+ E GD++ Y IVG EAD G +S S
Sbjct: 75 TLENMIRNAQIIDALDASNDLVTLGKTVTFTEVPDGDEEAYTIVGSAEADPFEGRISNDS 134
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA+AL+G ++G+ + + PGGE T +I+ +
Sbjct: 135 PIAKALLGHKIGEEVEIQTPGGEMTVKIIAIS 166
>gi|317484639|ref|ZP_07943542.1| transcription elongation factor GreA [Bilophila wadsworthia 3_1_6]
gi|316924113|gb|EFV45296.1| transcription elongation factor GreA [Bilophila wadsworthia 3_1_6]
Length = 160
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP++ +GF ++QEL ++ ERP +I+AI EAR GDL ENA Y AA+E Q + E
Sbjct: 1 MSSIPISKEGFQALEQELDRLKK-ERPHVIQAIKEAREEGDLKENAGYDAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +E+ + VID+ST+S ++ FGATV++ + ++G+++ + ++G EAD G +S
Sbjct: 60 RIKYIESRMALFNVIDLSTLSSEKAIFGATVTVEDADTGEEREFTLLGPDEADYAKGTIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ AL+GKE+GD I+VNAP G YEI+ + +
Sbjct: 120 IQSPVGVALLGKEVGDEITVNAPRGRINYEIIDIQF 155
>gi|269961971|ref|ZP_06176326.1| transcription elongation factor GreA [Vibrio harveyi 1DA3]
gi|269833294|gb|EEZ87398.1| transcription elongation factor GreA [Vibrio harveyi 1DA3]
Length = 157
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G ++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQLLRTELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++TM ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTTMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIAR LIGK GD + + PGG K +EI V +I
Sbjct: 120 SISSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157
>gi|323492033|ref|ZP_08097198.1| transcription elongation factor GreA [Vibrio brasiliensis LMG
20546]
gi|323313762|gb|EGA66861.1| transcription elongation factor GreA [Vibrio brasiliensis LMG
20546]
Length = 157
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K+++EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQKLREELERLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD + ++ PGGE+ +EI V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGERDFEIDSVEYI 157
>gi|238758699|ref|ZP_04619873.1| Transcription elongation factor greB [Yersinia aldovae ATCC 35236]
gi|238702996|gb|EEP95539.1| Transcription elongation factor greB [Yersinia aldovae ATCC 35236]
Length = 165
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + EL + +EERP + +A+SEA A GD SENAEY K+ +
Sbjct: 1 MAKSNYITREGWQALDSELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V + +++ +++VG E D +
Sbjct: 61 RRVRFLTKRLEVLKIVDPDPRQEGKVFFGAWVRVEN-ELEEQRTFRLVGPDEFDPAKKWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D ++V P GE TY IL + +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEVTYWILAIRY 156
>gi|212702631|ref|ZP_03310759.1| hypothetical protein DESPIG_00659 [Desulfovibrio piger ATCC 29098]
gi|212673903|gb|EEB34386.1| hypothetical protein DESPIG_00659 [Desulfovibrio piger ATCC 29098]
Length = 164
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 63/153 (41%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP++ +G+ ++++EL + ERP II+AI EAR GDL ENA Y AA+E Q + E R+
Sbjct: 6 IPISKQGYKRLEEELARLKS-ERPAIIQAIKEAREEGDLRENAGYDAARERQGMAEARIK 64
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E+ + +VID+ +SGD++ FG+TV + + ++ + + Y I+G EA+ G +S S
Sbjct: 65 YIESRMALYQVIDLDKLSGDKVIFGSTVEVEDVDTEESRTYTILGPDEAEPAKGSISFLS 124
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ +AL+GKE+GD +SV+ P G TYEI+ + +
Sbjct: 125 PVGQALLGKEVGDEVSVDIPRGRVTYEIVDITF 157
>gi|326796869|ref|YP_004314689.1| transcription elongation factor GreA [Marinomonas mediterranea
MMB-1]
gi|326547633|gb|ADZ92853.1| transcription elongation factor GreA [Marinomonas mediterranea
MMB-1]
Length = 158
Score = 166 bits (421), Expect = 9e-40, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 106/158 (67%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T +G ++++EL + RPR+I I+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKKVPMTLEGESRLREELNHLKSVVRPRVIADIAEAREHGDLKENAEYHAAREEQGFTEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + ++VIDI +M ++ FGATV+L ++ + YQIVGD EADV+ +
Sbjct: 61 RIKEIEGKLADSQVIDIKSMPHTGKVIFGATVTLYNVDTEETVTYQIVGDDEADVKQKKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S +SPIA+A+IGK D IS+N P GE YEI +V +I
Sbjct: 121 SYASPIAKAIIGKHEEDEISINVPSGEVVYEIEKVEYI 158
>gi|332163327|ref|YP_004299904.1| transcription elongation factor GreB [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|325667557|gb|ADZ44201.1| transcription elongation factor GreB [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862980|emb|CBX73113.1| transcription elongation factor greB [Yersinia enterocolitica
W22703]
Length = 165
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ +
Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V + SG+++ +++VG E D +
Sbjct: 61 RRVRFLTKRLEVLKIVDPDPRQEGKVYFGAWVQVEN-ESGEQRIFRLVGPDEFDPAKKWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D ++V P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156
>gi|16800599|ref|NP_470867.1| transcription elongation factor GreA [Listeria innocua Clip11262]
gi|16803536|ref|NP_465021.1| transcription elongation factor GreA [Listeria monocytogenes EGD-e]
gi|46907724|ref|YP_014113.1| transcription elongation factor GreA [Listeria monocytogenes
serotype 4b str. F2365]
gi|47095449|ref|ZP_00233059.1| transcription elongation factor GreA [Listeria monocytogenes str.
1/2a F6854]
gi|217964358|ref|YP_002350036.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M) [Listeria
monocytogenes HCC23]
gi|224500662|ref|ZP_03669011.1| transcription elongation factor GreA [Listeria monocytogenes
Finland 1988]
gi|224501564|ref|ZP_03669871.1| transcription elongation factor GreA [Listeria monocytogenes FSL
R2-561]
gi|226224097|ref|YP_002758204.1| transcription elongation factor GreA [Listeria monocytogenes
Clip81459]
gi|254824445|ref|ZP_05229446.1| transcription elongation factor greA [Listeria monocytogenes FSL
J1-194]
gi|254828270|ref|ZP_05232957.1| transcription elongation factor greA [Listeria monocytogenes FSL
N3-165]
gi|254829745|ref|ZP_05234400.1| transcription elongation factor GreA [Listeria monocytogenes
10403S]
gi|254852120|ref|ZP_05241468.1| transcription elongation factor greA [Listeria monocytogenes FSL
R2-503]
gi|254898338|ref|ZP_05258262.1| transcription elongation factor GreA [Listeria monocytogenes J0161]
gi|254912170|ref|ZP_05262182.1| transcription elongation factor GreA [Listeria monocytogenes J2818]
gi|254931431|ref|ZP_05264790.1| transcription elongation factor greA [Listeria monocytogenes
HPB2262]
gi|254936498|ref|ZP_05268195.1| transcription elongation factor greA [Listeria monocytogenes F6900]
gi|254993602|ref|ZP_05275792.1| transcription elongation factor GreA [Listeria monocytogenes FSL
J2-064]
gi|255017028|ref|ZP_05289154.1| transcription elongation factor GreA [Listeria monocytogenes FSL
F2-515]
gi|255022898|ref|ZP_05294884.1| transcription elongation factor GreA [Listeria monocytogenes FSL
J1-208]
gi|255027806|ref|ZP_05299792.1| transcription elongation factor GreA [Listeria monocytogenes FSL
J2-003]
gi|255029278|ref|ZP_05301229.1| transcription elongation factor GreA [Listeria monocytogenes LO28]
gi|255521197|ref|ZP_05388434.1| transcription elongation factor GreA [Listeria monocytogenes FSL
J1-175]
gi|284801885|ref|YP_003413750.1| hypothetical protein LM5578_1640 [Listeria monocytogenes 08-5578]
gi|284995027|ref|YP_003416795.1| hypothetical protein LM5923_1592 [Listeria monocytogenes 08-5923]
gi|290893856|ref|ZP_06556834.1| transcription elongation factor greA [Listeria monocytogenes FSL
J2-071]
gi|315282402|ref|ZP_07870822.1| transcription elongation factor GreA [Listeria marthii FSL S4-120]
gi|54037217|sp|P64278|GREA_LISIN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54041327|sp|P64277|GREA_LISMO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|67460875|sp|Q71ZH4|GREA_LISMF RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799560|sp|B8DE15|GREA_LISMH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|259647647|sp|C1KVE3|GREA_LISMC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|16410925|emb|CAC99574.1| lmo1496 [Listeria monocytogenes EGD-e]
gi|16414004|emb|CAC96762.1| lin1531 [Listeria innocua Clip11262]
gi|46880993|gb|AAT04290.1| transcription elongation factor GreA [Listeria monocytogenes
serotype 4b str. F2365]
gi|47016270|gb|EAL07193.1| transcription elongation factor GreA [Listeria monocytogenes str.
1/2a F6854]
gi|217333628|gb|ACK39422.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M) [Listeria
monocytogenes HCC23]
gi|225876559|emb|CAS05268.1| Putative transcription elongation factor GreA [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|258600658|gb|EEW13983.1| transcription elongation factor greA [Listeria monocytogenes FSL
N3-165]
gi|258605422|gb|EEW18030.1| transcription elongation factor greA [Listeria monocytogenes FSL
R2-503]
gi|258609092|gb|EEW21700.1| transcription elongation factor greA [Listeria monocytogenes F6900]
gi|284057447|gb|ADB68388.1| hypothetical protein LM5578_1640 [Listeria monocytogenes 08-5578]
gi|284060494|gb|ADB71433.1| hypothetical protein LM5923_1592 [Listeria monocytogenes 08-5923]
gi|290556573|gb|EFD90109.1| transcription elongation factor greA [Listeria monocytogenes FSL
J2-071]
gi|293582981|gb|EFF95013.1| transcription elongation factor greA [Listeria monocytogenes
HPB2262]
gi|293590143|gb|EFF98477.1| transcription elongation factor GreA [Listeria monocytogenes J2818]
gi|293593681|gb|EFG01442.1| transcription elongation factor greA [Listeria monocytogenes FSL
J1-194]
gi|307571077|emb|CAR84256.1| greA [Listeria monocytogenes L99]
gi|313608715|gb|EFR84544.1| transcription elongation factor GreA [Listeria monocytogenes FSL
F2-208]
gi|313613954|gb|EFR87678.1| transcription elongation factor GreA [Listeria marthii FSL S4-120]
gi|328465535|gb|EGF36764.1| transcription elongation factor GreA [Listeria monocytogenes 1816]
gi|328474861|gb|EGF45661.1| transcription elongation factor GreA [Listeria monocytogenes 220]
gi|332311938|gb|EGJ25033.1| Transcription elongation factor [Listeria monocytogenes str. Scott
A]
Length = 160
Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats.
Identities = 54/152 (35%), Positives = 93/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+
Sbjct: 7 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S S
Sbjct: 67 TIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA+ L+G + G+ +++ P G+ + +I ++
Sbjct: 127 PIAKGLLGHKEGEEVTIQTPAGDMSVKIEKIT 158
>gi|239995761|ref|ZP_04716285.1| Transcription elongation factor GreA [Alteromonas macleodii ATCC
27126]
Length = 153
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 65/153 (42%), Positives = 111/153 (72%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G ++ EL + + RPRII++I+EAR +GDL ENAEY AA+E Q+ EGR+ ++
Sbjct: 1 MTARGAQMLRDELNELKTKTRPRIIESIAEAREHGDLKENAEYHAAREQQSFCEGRIQDI 60
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A++ID++ M + ++ FG TV+++ ++ ++ Y+IVGD EAD+++ L+S++SP
Sbjct: 61 EGKLSNAQIIDVTKMENTGKVIFGTTVTILNVDTDEETTYRIVGDDEADIKNNLISVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGKEL D++++ P G EI++V +I
Sbjct: 121 IARGLIGKELDDMVTIQTPAGAVEVEIIEVEYI 153
>gi|149192158|ref|ZP_01870378.1| transcription elongation factor GreA [Vibrio shilonii AK1]
gi|148833998|gb|EDL51015.1| transcription elongation factor GreA [Vibrio shilonii AK1]
Length = 157
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 115/158 (72%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K++++L + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGEQKLREDLDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ + +I FG+TV+L++ ++ ++ YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKLDNSGKIIFGSTVTLIDIDTDAEQTYQIVGDDEADIKSGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD +++ PGG+K +EI +V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVTIVTPGGQKDFEIDKVAYI 157
>gi|71278345|ref|YP_270131.1| transcription elongation factor GreA [Colwellia psychrerythraea
34H]
gi|71144085|gb|AAZ24558.1| transcription elongation factor GreA [Colwellia psychrerythraea
34H]
Length = 158
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 105/158 (66%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G D + EL+ + E+RPRI+K I+ AR +GDL ENAEY AAKE Q EG
Sbjct: 1 MIKYPMTLRGSDLLHDELKILKTEKRPRIVKDIATAREHGDLKENAEYHAAKEEQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A+VID++ + ++ FG TV+L+ ++ + YQIVGD EAD ++G +
Sbjct: 61 RIQDIEGRLCNAQVIDVTAIPNHGKVIFGTTVTLLNLDTEVEVTYQIVGDDEADFKTGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE+ I + PGG YEI+ V I
Sbjct: 121 SVNSPIARGLIGKEVDSEIEITIPGGVVEYEIVSVEHI 158
>gi|157826502|ref|YP_001495566.1| transcription elongation factor GreA [Rickettsia bellii OSU 85-389]
gi|229485905|sp|A8GUN3|GREA_RICB8 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|157801806|gb|ABV78529.1| transcription elongation factor GreA [Rickettsia bellii OSU 85-389]
Length = 161
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 76/156 (48%), Positives = 114/156 (73%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +GF+K++ EL+ + ER ++ + I+EARA+GDLSENAEY+AA+E Q E
Sbjct: 1 MAKFPITDQGFEKLEHELKHLKHVERKKVSEDIAEARAHGDLSENAEYEAAREKQAFVEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ LE+I RAE+I+++ +SGD I FGATV L++ + ++ Y IVG+ EAD+ VS
Sbjct: 61 RIKHLEDITARAEIINVAKLSGDSIKFGATVVLIDDETEEEVMYHIVGEYEADITKKRVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SPIA+ALIGK +GDI+ V PGG K+YE++ + +
Sbjct: 121 IASPIAKALIGKSVGDIVEVMTPGGVKSYEVVTIKY 156
>gi|33152279|ref|NP_873632.1| transcription elongation factor GreB [Haemophilus ducreyi 35000HP]
gi|71152092|sp|Q7VM42|GREB_HAEDU RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|33148502|gb|AAP96021.1| transcription elongation factor [Haemophilus ducreyi 35000HP]
Length = 162
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + QEL++ +EERP++ +++SEA A GD SENAEY K +
Sbjct: 1 MAKSNYITRAGWQALDQELKYLWKEERPKVTQSVSEAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + ++ID ++ FGA + L G+ Y+IVG E D +
Sbjct: 61 RRIRFLSKRLEALQIIDYHPQQAGKVFFGAWIELENNE-GEINQYRIVGCDEFDPTKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK + D I V P G+ + I ++ +
Sbjct: 120 SIDSPVARALIGKCVDDEIEVQTPTGKAVFYINKIWY 156
>gi|226327577|ref|ZP_03803095.1| hypothetical protein PROPEN_01448 [Proteus penneri ATCC 35198]
gi|225204103|gb|EEG86457.1| hypothetical protein PROPEN_01448 [Proteus penneri ATCC 35198]
Length = 159
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + +EL++ +EERPR+ +++SEA A GD SENAEY K+ +
Sbjct: 1 MAKSNYITRDGWYALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V+L + + + K +++VG E D +
Sbjct: 61 RRVRFLSKRLDELKIVDPDPRQEGKVYFGAWVTLED-DDENVKTFRLVGPDEFDPAKQWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D ISV PGGE Y +L + +
Sbjct: 120 SIDSPVARALIGKQVDDEISVQTPGGEVNYCVLSIKY 156
>gi|56708370|ref|YP_170266.1| transcription elongation factor GreA [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89256763|ref|YP_514125.1| transcription elongation factor GreA [Francisella tularensis subsp.
holarctica LVS]
gi|110670840|ref|YP_667397.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis FSC198]
gi|115315154|ref|YP_763877.1| transcriptional elongation factor [Francisella tularensis subsp.
holarctica OSU18]
gi|118497261|ref|YP_898311.1| transcriptional elongation factor [Francisella tularensis subsp.
novicida U112]
gi|134302355|ref|YP_001122324.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis WY96-3418]
gi|156502925|ref|YP_001428990.1| transcription elongation factor GreA [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|167010904|ref|ZP_02275835.1| transcriptional elongation factor [Francisella tularensis subsp.
holarctica FSC200]
gi|187931963|ref|YP_001891948.1| transcriptional elongation factor [Francisella tularensis subsp.
mediasiatica FSC147]
gi|194323563|ref|ZP_03057340.1| transcription elongation factor GreA family protein [Francisella
tularensis subsp. novicida FTE]
gi|208779054|ref|ZP_03246400.1| transcription elongation factor GreA family protein [Francisella
novicida FTG]
gi|224457500|ref|ZP_03665973.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254368054|ref|ZP_04984074.1| transcriptional elongation factor [Francisella tularensis subsp.
holarctica 257]
gi|254370993|ref|ZP_04986996.1| hypothetical protein [Francisella tularensis subsp. tularensis
FSC033]
gi|254372634|ref|ZP_04988123.1| transcriptional elongation factor [Francisella tularensis subsp.
novicida GA99-3549]
gi|254875193|ref|ZP_05247903.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis MA00-2987]
gi|290954459|ref|ZP_06559080.1| transcription elongation factor GreA [Francisella tularensis subsp.
holarctica URFT1]
gi|295312121|ref|ZP_06802932.1| transcription elongation factor GreA [Francisella tularensis subsp.
holarctica URFT1]
gi|81597269|sp|Q5NFC6|GREA_FRATT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|122324847|sp|Q0BKZ4|GREA_FRATO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123094496|sp|Q2A2C7|GREA_FRATH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123359419|sp|Q14GS9|GREA_FRAT1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|259647642|sp|A7NDI1|GREA_FRATF RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|259647643|sp|B2SDF5|GREA_FRATM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|259647644|sp|A0Q5P2|GREA_FRATN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|259647645|sp|A4IZ52|GREA_FRATW RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54113791|gb|AAV29529.1| NT02FT0408 [synthetic construct]
gi|56604862|emb|CAG45946.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis SCHU S4]
gi|89144594|emb|CAJ79913.1| transcriptional elongation factor [Francisella tularensis subsp.
holarctica LVS]
gi|110321173|emb|CAL09329.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis FSC198]
gi|115130053|gb|ABI83240.1| transcription elongation factor GreA [Francisella tularensis subsp.
holarctica OSU18]
gi|118423167|gb|ABK89557.1| transcriptional elongation factor [Francisella novicida U112]
gi|134050132|gb|ABO47203.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis WY96-3418]
gi|134253864|gb|EBA52958.1| transcriptional elongation factor [Francisella tularensis subsp.
holarctica 257]
gi|151569234|gb|EDN34888.1| hypothetical protein FTBG_01615 [Francisella tularensis subsp.
tularensis FSC033]
gi|151570361|gb|EDN36015.1| transcriptional elongation factor [Francisella novicida GA99-3549]
gi|156253528|gb|ABU62034.1| transcriptional elongation factor, GreA/GreB family protein
[Francisella tularensis subsp. holarctica FTNF002-00]
gi|187712872|gb|ACD31169.1| transcriptional elongation factor [Francisella tularensis subsp.
mediasiatica FSC147]
gi|194322418|gb|EDX19899.1| transcription elongation factor GreA family protein [Francisella
tularensis subsp. novicida FTE]
gi|208744854|gb|EDZ91152.1| transcription elongation factor GreA family protein [Francisella
novicida FTG]
gi|254841192|gb|EET19628.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282159989|gb|ADA79380.1| transcriptional elongation factor [Francisella tularensis subsp.
tularensis NE061598]
gi|328676750|gb|AEB27620.1| Transcription elongation factor GreA [Francisella cf. novicida Fx1]
Length = 160
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR
Sbjct: 4 DRVPMTPAGEQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63
Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S
Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ +P+ARALI KE GD I+++ P G+ TYEI+ V +
Sbjct: 124 VVAPLARALIKKEEGDEITLDTPKGKVTYEIVAVEY 159
>gi|146308634|ref|YP_001189099.1| transcription elongation factor GreA [Pseudomonas mendocina ymp]
gi|330504838|ref|YP_004381707.1| transcription elongation factor GreA [Pseudomonas mendocina NK-01]
gi|145576835|gb|ABP86367.1| transcription elongation factor GreA [Pseudomonas mendocina ymp]
gi|328919124|gb|AEB59955.1| transcription elongation factor GreA [Pseudomonas mendocina NK-01]
Length = 158
Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 101/158 (63%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +G +++EL + RP + +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MNKYPMTVQGARALEEELAHLTKVRRPALSQAIAEARELGDLKENAEYHAAREEQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A +ID++++ ++ FG TV + + + YQIVG+ EAD++ G +
Sbjct: 61 RVRDIEGRLQNAVIIDVTSIEHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKQGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARAL+GK GD++ V P G YEI++V I
Sbjct: 121 SVGSPIARALVGKSEGDVVGVQTPSGLVEYEIVEVRHI 158
>gi|310815067|ref|YP_003963031.1| transcription elongation factor GreA [Ketogulonicigenium vulgare
Y25]
gi|308753802|gb|ADO41731.1| transcription elongation factor GreA [Ketogulonicigenium vulgare
Y25]
Length = 156
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 86/156 (55%), Positives = 123/156 (78%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GFDK+ EL+ + ERP II AI+EARA+GDLSENAEY +AKE Q+ EG
Sbjct: 1 MEKIPLTRTGFDKLDVELKHLKSVERPAIIAAIAEARAHGDLSENAEYHSAKEKQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE +I+ AEVID S +SG I FGA V+LV++++ ++K YQIVG+ EADV++G ++
Sbjct: 61 RIKELEGVISLAEVIDTSRLSG-TIKFGAMVTLVDEDTDEEKAYQIVGEYEADVENGRLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALIGK++GD + V PGG+++YE+L +++
Sbjct: 120 IKSPLARALIGKDVGDSVEVRTPGGDRSYEVLNIVY 155
>gi|213027547|ref|ZP_03341994.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
Length = 145
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 66/145 (45%), Positives = 105/145 (72%), Gaps = 1/145 (0%)
Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EGR+ ++E ++ A+
Sbjct: 1 MREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQ 60
Query: 75 VIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGK
Sbjct: 61 VIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGK 120
Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158
E D++ + PGG+ YE+L+V ++
Sbjct: 121 EQDDVVVIKTPGGDVEYEVLKVEYL 145
>gi|315641239|ref|ZP_07896316.1| transcription elongation factor GreA [Enterococcus italicus DSM
15952]
gi|315483006|gb|EFU73525.1| transcription elongation factor GreA [Enterococcus italicus DSM
15952]
Length = 157
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKAKLEQELEELKTVKRGEIIERIKIARSFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE +I A++ID + D ++ G TV+ VE GD++ Y IVG EAD SG
Sbjct: 61 EGRITTLETMIRFAQIIDNDGVDQDEVSIGKTVTFVELPDGDEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK+L D ++++ PGG+ +I+ V
Sbjct: 121 ISNDSPIAQALIGKKLNDEVTISTPGGDMPVKIISVK 157
>gi|161507838|ref|YP_001577802.1| transcription elongation [Lactobacillus helveticus DPC 4571]
gi|160348827|gb|ABX27501.1| transcription elongation [Lactobacillus helveticus DPC 4571]
Length = 158
Score = 165 bits (419), Expect = 1e-39, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 102/157 (64%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T++G +K+Q EL+ + +RP +I+ I AR++GDLSEN+EY AAK+ Q+
Sbjct: 1 MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E ++ A+V+D ++ + ++ G TV+ E + D + Y IVG E+D +G
Sbjct: 61 EDRIAQVEEMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDAETYTIVGSDESDPLNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK+ G+ +S+ PG + I V
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGSQFDVVINNVE 157
>gi|229111852|ref|ZP_04241398.1| Transcription elongation factor greA [Bacillus cereus Rock1-15]
gi|228671608|gb|EEL26906.1| Transcription elongation factor greA [Bacillus cereus Rock1-15]
Length = 189
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 24 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S
Sbjct: 84 QLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 143
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 144 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 175
>gi|307720542|ref|YP_003891682.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM
16294]
gi|306978635|gb|ADN08670.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM
16294]
Length = 165
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 108/157 (68%), Gaps = 1/157 (0%)
Query: 2 VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+ KI P+T G++K+Q E++ ++ +RP ++KAI EA +GDL ENAEY AAKE Q +
Sbjct: 1 MQKIEPMTLFGYEKLQAEVKDLKEVKRPGVVKAIEEALEHGDLKENAEYHAAKEQQKNID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AEL+ I+ ++++D + + +++FG+TV + ++ ++ +Y IVG E++ GL+
Sbjct: 61 NRLAELQEILGNSQIVDPTELEHAKVSFGSTVVMTNLDTDEEVSYTIVGGCESNPDIGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+A+ L+GKE GD + V PGGEK +EI +V +
Sbjct: 121 SFNSPLAKQLLGKEEGDEVKVRLPGGEKEFEIDEVKY 157
>gi|294501340|ref|YP_003565040.1| transcription elongation factor GreA [Bacillus megaterium QM B1551]
gi|295706687|ref|YP_003599762.1| transcription elongation factor GreA [Bacillus megaterium DSM 319]
gi|294351277|gb|ADE71606.1| transcription elongation factor GreA [Bacillus megaterium QM B1551]
gi|294804346|gb|ADF41412.1| transcription elongation factor GreA [Bacillus megaterium DSM 319]
Length = 158
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 102/158 (64%), Gaps = 2/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + P+T +G K++QEL + + +R +++ I AR++GDLSEN+EY +AK+ Q
Sbjct: 1 MAQEKVFPMTEEGKLKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ LEN+I A++I+ + ++ G +V+ VE GD++ Y IVG EAD G
Sbjct: 61 VEGRITTLENMIRNAKIIEEDVENSSIVSLGKSVTFVELPDGDEETYTIVGSAEADPFEG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA++L+GK++GD ++V PGG+ + +I+ V
Sbjct: 121 KISNDSPIAKSLMGKQIGDQVTVQTPGGDMSVKIVSVK 158
>gi|254456594|ref|ZP_05070023.1| transcription elongation factor [Candidatus Pelagibacter sp.
HTCC7211]
gi|207083596|gb|EDZ61022.1| transcription elongation factor [Candidatus Pelagibacter sp.
HTCC7211]
Length = 158
Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK P+T G +K+++EL + ++++RP I+ AI+EAR++GDL ENAEY AAKE Q+ NEG
Sbjct: 1 MDKEPITLNGLNKLKEELIFLKEKKRPEIVAAIAEARSHGDLKENAEYHAAKEEQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+++II RA VID++ ++ D ++ FG+TV L ++G+K +Y+IVG EAD++ L+
Sbjct: 61 RITEIDDIIARANVIDVTKLNNDGKVIFGSTVFLENLDNGEKISYKIVGKDEADLKQKLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPI R LIGK D++ + P G K +EI V +I
Sbjct: 121 FFQSPIGRGLIGKNKNDLVEITTPAGIKNFEIKDVQYI 158
>gi|323144905|ref|ZP_08079468.1| transcription elongation factor GreA [Succinatimonas hippei YIT
12066]
gi|322415303|gb|EFY06074.1| transcription elongation factor GreA [Succinatimonas hippei YIT
12066]
Length = 191
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 66/161 (40%), Positives = 109/161 (67%), Gaps = 5/161 (3%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++ P+T++G +++EL + ERPRI+ AI+EAR++GDLSENAEY AAKE Q L E
Sbjct: 29 MEQTPMTARGEMLLRKELERLKLVERPRIVAAIAEARSHGDLSENAEYDAAKEEQGLCEA 88
Query: 62 RMAELENIITRAEVIDISTMSGD-----RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
R+ ++E + A +ID++ + ++ FG TV++++ ++ + Y+IVG+ EAD+Q
Sbjct: 89 RIKDIEAKLATANIIDVTKLKPAGGAPLKVVFGCTVTVIDVDTDKEVTYKIVGEDEADIQ 148
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S L+S +PIA+ L+GK GD +N P G+ TYEI ++ +
Sbjct: 149 SNLISYKTPIAKGLLGKIEGDEAQINIPRGQVTYEIAEIKY 189
>gi|254374096|ref|ZP_04989578.1| transcriptional elongation factor [Francisella novicida GA99-3548]
gi|151571816|gb|EDN37470.1| transcriptional elongation factor [Francisella novicida GA99-3548]
Length = 160
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 111/156 (71%), Gaps = 1/156 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR
Sbjct: 4 DRVPMTPAGEQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63
Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S
Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ +P+ARALI KE GD I+++ P G TYEI+ V +
Sbjct: 124 VVAPLARALIKKEEGDEITLDTPKGRVTYEIVAVEY 159
>gi|74316538|ref|YP_314278.1| transcription elongation factor GreB [Thiobacillus denitrificans
ATCC 25259]
gi|74056033|gb|AAZ96473.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC
25259]
Length = 187
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ E + ERP++++ IS A + GD SEN +Y K+ + R+
Sbjct: 30 KNYMTPAGYARLDAEFNQLWKVERPKLVETISWAASNGDRSENGDYIYGKKRLREVDRRI 89
Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D +T + D++ FGATV++ + + G + Y IVG EAD G ++
Sbjct: 90 RFLSKRLEHAEVVDPATRAATDQVFFGATVTVADAD-GSESTYAIVGLDEADASRGRIAW 148
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ GD + V P G + EI++V ++
Sbjct: 149 MSPMARALLKAREGDTVVVQTPDGRREVEIIEVRYV 184
>gi|330721348|gb|EGG99423.1| Transcription elongation factor GreA [gamma proteobacterium
IMCC2047]
Length = 158
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ +G ++++EL + ERPRII+AI+EARA+GDL ENAEY AA+E Q EG
Sbjct: 1 MNKFPMSKQGELQLREELERLKTIERPRIIEAIAEARAHGDLKENAEYHAAREEQGFTEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ A+VID++ +S ++ FG TV L ++ + +YQIVG+ EAD++ +
Sbjct: 61 RIQEIEGKLSNAQVIDVTAISNTGKVIFGVTVELENIDTEEVVSYQIVGEDEADMKQRKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI+SPIAR LIGK GD++ VN PGG YEI+ V +
Sbjct: 121 SITSPIARGLIGKVEGDVVGVNVPGGLVEYEIISVEHV 158
>gi|85373967|ref|YP_458029.1| transcription elongation factor GreA [Erythrobacter litoralis
HTCC2594]
gi|84787050|gb|ABC63232.1| transcription elongation factor [Erythrobacter litoralis HTCC2594]
Length = 155
Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats.
Identities = 76/157 (48%), Positives = 117/157 (74%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+ ++G++++ +L+ + ERP+++ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 1 MEKVPMLAEGYERLTADLKALRA-ERPKVVDAIEEARAHGDLSENAEYHAAKERQGQIEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++A++E+ +TRA++ID +T+SGD+I FGATV+L++++ K YQIVG EAD G +S
Sbjct: 60 QIADIEDRVTRAQIIDPATLSGDKIVFGATVTLLDEDDKPVK-YQIVGQTEADAAKGRIS 118
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSPI RALIGK++GD I V P G+K Y + +V ++
Sbjct: 119 YSSPIGRALIGKQVGDEIEVTVPSGDKFYLVDKVEFV 155
>gi|328675796|gb|AEB28471.1| Transcription elongation factor GreA [Francisella cf. novicida
3523]
Length = 160
Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 113/156 (72%), Gaps = 1/156 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D++P+T G ++ EL ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR
Sbjct: 4 DRVPMTPAGEQALRAELEKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63
Query: 63 MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ++E+ ++ A+VID++ + + + FGATV+++ ++ ++ Y+IVG+ EAD+ + +S
Sbjct: 64 IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETIYKIVGEDEADIDNNKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+++P+ARALI KE GD +S++ P G+ TYEI+ V +
Sbjct: 124 VAAPLARALIKKEEGDEVSLDTPKGKVTYEIVAVEY 159
>gi|87311291|ref|ZP_01093413.1| transcription elongation factor greA [Blastopirellula marina DSM
3645]
gi|87286031|gb|EAQ77943.1| transcription elongation factor greA [Blastopirellula marina DSM
3645]
Length = 163
Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 100/157 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+ P++ KGFDK++ +L + E PRI + I+ AR GDL ENAEY A+E Q + +
Sbjct: 4 MADRNPMSRKGFDKLKADLDHLESVEMPRITEKIATAREEGDLKENAEYHGARETQGMIQ 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ +++ ++RA +ID +++ + F AT+++ + + ++ Y +VG+ E D + +
Sbjct: 64 AKIHAIKSKLSRAYIIDPASIDQSVVGFFATITVEDLDMDEEDTYTLVGNGEEDFMNNKI 123
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+A++L+G ++GD++ + AP G +IL++ +
Sbjct: 124 LIDSPMAQSLLGHKVGDVVPIEAPKGTYELKILKIEY 160
>gi|297180938|gb|ADI17141.1| transcription elongation factor [uncultured gamma proteobacterium
HF0070_08D07]
Length = 157
Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 75/155 (48%), Positives = 114/155 (73%), Gaps = 1/155 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
IP+T G + ++ EL R+ E R I+K I+EARA+GDL ENAEY AA+E Q+LNEGR+
Sbjct: 3 IPMTVHGAESLRAELAERKGEIRQSIVKDIAEARAHGDLKENAEYHAAREQQSLNEGRIQ 62
Query: 65 ELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++E+ + A++ID++ + ++ FGATV++ ++ S D+ YQIVG+ EAD++ G +S+
Sbjct: 63 DIESKLADAQIIDVTKIPATGKVVFGATVTIADEESDDETTYQIVGEDEADLKFGKISVL 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPI+RALIGK+ GD+ SVN+P G K YEI++V +
Sbjct: 123 SPISRALIGKDTGDVASVNSPSGVKDYEIIKVEHL 157
>gi|77360173|ref|YP_339748.1| transcription elongation factor greA [Pseudoalteromonas
haloplanktis TAC125]
gi|76875084|emb|CAI86305.1| transcription elongation factor greA [Pseudoalteromonas
haloplanktis TAC125]
Length = 158
Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G D +++EL + RP+I+ I+ AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQTIPMTVRGADLLRKELTELKTVTRPKIVSDIAVAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ ++ID++ M ++ FG TV++V + + YQIVGD EA ++ +
Sbjct: 61 RIQEIEAKLSNVQIIDVTKMPNTGKVIFGTTVTIVNVETDVEVKYQIVGDDEASIKDNRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK+ D +++ P G YEI++V +I
Sbjct: 121 SVNSPIARGLIGKQADDAVNIETPKGTVEYEIIEVEYI 158
>gi|94265017|ref|ZP_01288786.1| Prokaryotic transcription elongation factor GreA [delta
proteobacterium MLMS-1]
gi|93454506|gb|EAT04791.1| Prokaryotic transcription elongation factor GreA [delta
proteobacterium MLMS-1]
Length = 187
Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats.
Identities = 71/156 (45%), Positives = 115/156 (73%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV++IP+T +G ++++QEL Q+++RP +I+AI AR +GDL ENAEY AAKE Q+ E
Sbjct: 29 MVERIPMTRQGHERLRQELNRLQRQDRPTVIEAIEVAREHGDLKENAEYHAAKERQSHIE 88
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL++ ++RAEVID+ + +R+ FG V LV+ ++ + +YQ++G +EADV+ G +
Sbjct: 89 GRIMELKDKLSRAEVIDVEDLDCERVVFGVVVKLVDLDTEAEVSYQMLGPEEADVEQGSI 148
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SP+ RA+IGK +GD I+V PGG + +E++ +
Sbjct: 149 SVLSPLGRAMIGKSVGDEITVKTPGGVRQFEVMDIS 184
>gi|254449181|ref|ZP_05062631.1| transcription elongation factor GreB [gamma proteobacterium
HTCC5015]
gi|198261227|gb|EDY85522.1| transcription elongation factor GreB [gamma proteobacterium
HTCC5015]
Length = 158
Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 93/158 (58%), Gaps = 1/158 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M + +T +GFD++++EL + +EERPR+ +A+SEA A GD SENAEY K+
Sbjct: 1 MSRRSHYITREGFDRLEKELNFLWKEERPRVTQAVSEAAALGDRSENAEYIYGKKRLREI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ R+ L + +V+ S ++ FGA V L + +SG+ Y+IVG E D + G
Sbjct: 61 DRRVRFLSKRLDELQVVYPSPQQAGKVFFGAWVELEDGDSGEVVKYRIVGPDEFDPEVGA 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S+ SP+ARAL+GK L + V P G + + +L V +
Sbjct: 121 ISVDSPVARALLGKALNQTVRVETPKGSRHFIVLDVSY 158
>gi|88799656|ref|ZP_01115231.1| transcription elongation factor GreA [Reinekea sp. MED297]
gi|88777550|gb|EAR08750.1| transcription elongation factor GreA [Reinekea sp. MED297]
Length = 158
Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +Q EL+ + +RP +I AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTVEGELALQAELKELKSVKRPEVIAAIAEAREHGDLKENAEYHAAREQQGFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A++E ++ ++VI++ + ++ FG TV+L+ + Y+IVGD EA+V+ +
Sbjct: 61 RIADIEGKLSASQVINVHDIPNTGKVIFGTTVTLLNTETDQGVTYKIVGDDEANVKVNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIARALIGKE GD+++V PGG YEI V
Sbjct: 121 SVNSPIARALIGKEEGDVVNVKTPGGTVEYEIELVEH 157
>gi|27904835|ref|NP_777961.1| transcription elongation factor GreA [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|29611722|sp|P59489|GREA_BUCBP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|27904233|gb|AAO27066.1| transcription elongation factor GreA [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
Length = 159
Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+IP+T G +K+++EL + +RP+IIK+I EAR +GDL EN+EY AA+E Q E
Sbjct: 1 MNDQIPMTILGVEKLRKELEMLKTIKRPKIIKSIIEARQHGDLKENSEYHAAREEQGFCE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRI-AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E +++A +IDI+ + + + FG+TV+++ S + Y+IVGD E++ + L
Sbjct: 61 GRIKEIELKLSKARIIDITKVKNNGVIIFGSTVTILNLTSNQEFTYRIVGDDESNFKRKL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SI+SP++R L+GK++ D+ ++ P G+ Y+IL++ +
Sbjct: 121 ISINSPMSRGLVGKKVSDVATIKTPVGDVKYKILKIEY 158
>gi|157164259|ref|YP_001466449.1| transcription elongation factor GreA [Campylobacter concisus 13826]
gi|112801597|gb|EAT98941.1| transcription elongation factor GreA [Campylobacter concisus 13826]
Length = 161
Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 105/157 (66%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + P+T G++KI+ EL+ + +RP+I+ I AR++GDL ENAEY AAKE Q +
Sbjct: 1 MSE--PMTMHGYEKIEAELKDLRLVQRPQIVTEIDIARSHGDLKENAEYHAAKEKQAFID 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AEL ++ AEVID S+ DR+ FG++V+++++ + + Y IVG E+D+ G +
Sbjct: 59 ARIAELSALLANAEVIDPSSYEHDRVRFGSSVTIMDEETEVEHTYTIVGVSESDLDKGYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+A+ L+GK GD +++N P G EI+++ +
Sbjct: 119 SINSPLAKQLLGKAEGDEVALNLPKGRSDVEIVKICY 155
>gi|238783101|ref|ZP_04627127.1| Transcription elongation factor greB [Yersinia bercovieri ATCC
43970]
gi|238715897|gb|EEQ07883.1| Transcription elongation factor greB [Yersinia bercovieri ATCC
43970]
Length = 165
Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ +
Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +V+D ++ FGA V + + +++ +++VG E D +
Sbjct: 61 RRVRFLTKRLEVLKVVDPDPRQEGKVFFGAWVRVEN-EAEEQRIFRLVGPDEFDPAKKWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D ++V P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156
>gi|152980351|ref|YP_001353931.1| GreA transcription elongation factor [Janthinobacterium sp.
Marseille]
gi|151280428|gb|ABR88838.1| GreA transcription elongation factor [Janthinobacterium sp.
Marseille]
Length = 157
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 79/154 (51%), Positives = 109/154 (70%), Gaps = 1/154 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G + +++EL + +ERP +I AI+EARA GDLSENA+Y AAKE Q+ EGR+A+
Sbjct: 4 PITPYGANVLKEELHRLKTKERPWVINAIAEARAQGDLSENADYDAAKEKQSFIEGRIAD 63
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E + ++VID +T+ R+ F ATV L + SG+K YQIVG EAD++ VSI+S
Sbjct: 64 IEGKLGTSQVIDPTTLEAEGRVVFAATVDLEDLESGEKVTYQIVGIDEADLKEKKVSITS 123
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
PIARA+IGK GD++ V AP G + YEILQV +I
Sbjct: 124 PIARAMIGKYAGDVVGVEAPAGLREYEILQVRYI 157
>gi|254508242|ref|ZP_05120366.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Vibrio parahaemolyticus 16]
gi|219548859|gb|EED25860.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Vibrio parahaemolyticus 16]
Length = 157
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 117/158 (74%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G ++++EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGEKQLREELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDVDTDEEKRYQIVGDDEADIKSGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD ++++ PGG++ +EI +V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVAISTPGGDRDFEIDRVEYI 157
>gi|114778233|ref|ZP_01453105.1| transcription elongation factor GreA [Mariprofundus ferrooxydans
PV-1]
gi|114551480|gb|EAU54035.1| transcription elongation factor GreA [Mariprofundus ferrooxydans
PV-1]
Length = 157
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 78/157 (49%), Positives = 118/157 (75%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++++P+T KG ++++Q L + + E+R +I+ I ARA+GDLSENAEY AAKE Q +NEG
Sbjct: 1 MERVPMTKKGAEELKQLLAYLKGEKRHQIVSTIESARAHGDLSENAEYHAAKEEQGMNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ++E+ + RA VID +T+ +++ FGATV L++ N G + YQIVG EAD++ G+VS
Sbjct: 61 RITDIEDKLARAHVIDPATIKAEKVVFGATVELIDVNQGTEVTYQIVGVDEADIEKGMVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I+SPIARA+IGKE GD+ V APGGE+ +EI + ++
Sbjct: 121 ITSPIARAMIGKEEGDLAVVQAPGGEREFEIQAIEYV 157
>gi|91228943|ref|ZP_01262840.1| transcription elongation factor GreA [Vibrio alginolyticus 12G01]
gi|262393373|ref|YP_003285227.1| transcription elongation factor GreA [Vibrio sp. Ex25]
gi|269968316|ref|ZP_06182338.1| transcription elongation factor GreA [Vibrio alginolyticus 40B]
gi|91187503|gb|EAS73838.1| transcription elongation factor GreA [Vibrio alginolyticus 12G01]
gi|262336967|gb|ACY50762.1| transcription elongation factor GreA [Vibrio sp. Ex25]
gi|269827067|gb|EEZ81379.1| transcription elongation factor GreA [Vibrio alginolyticus 40B]
Length = 157
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G K++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQKLRAELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M + ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENTGKVIFGSTVTLIDIDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD +++ PGG K +EI +V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVAIQTPGGAKDFEIDRVEYI 157
>gi|319956761|ref|YP_004168024.1| transcription elongation factor grea [Nitratifractor salsuginis DSM
16511]
gi|319419165|gb|ADV46275.1| transcription elongation factor GreA [Nitratifractor salsuginis DSM
16511]
Length = 161
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 72/156 (46%), Positives = 107/156 (68%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+ + K+ QEL + EER +I K I EARA GDL ENAEY AAKE Q L E
Sbjct: 1 MQKEPMFESTYQKLSQELEQLKNEERAKIAKVIDEARALGDLKENAEYHAAKEKQGLMEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ EL++++ RA+VID S ++ R++FG+TV LV++++ ++ Y IVG QE+D GL+S
Sbjct: 61 RIIELQDLLARAQVIDPSKLAHQRVSFGSTVVLVDQDTDEEVRYVIVGTQESDPSRGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+GKE G+ + + P G K ++I ++ +
Sbjct: 121 IQSPMARALLGKEEGEEVELQLPSGRKHFDIEEIKY 156
>gi|238854479|ref|ZP_04644818.1| transcription elongation factor [Lactobacillus jensenii 269-3]
gi|260665473|ref|ZP_05866320.1| transcription elongation factor GreB [Lactobacillus jensenii
SJ-7A-US]
gi|282934549|ref|ZP_06339801.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1]
gi|238832906|gb|EEQ25204.1| transcription elongation factor [Lactobacillus jensenii 269-3]
gi|260560741|gb|EEX26718.1| transcription elongation factor GreB [Lactobacillus jensenii
SJ-7A-US]
gi|281301387|gb|EFA93679.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1]
Length = 158
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M K P+T+ G +K++ EL+ + +RP +I+ I AR+YGDLSEN+EY AAK+ Q+
Sbjct: 1 MPQKTYPMTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E ++ A+VID ++ + ++ G TV+ E D + Y IVG E+D +G
Sbjct: 61 EQRIAQVEQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK GD +S+N PGG I V
Sbjct: 121 ISNDSPIAQALLGKHKGDTVSINTPGGSFDVVINDVK 157
>gi|295399312|ref|ZP_06809294.1| GreA/GreB family elongation factor [Geobacillus thermoglucosidasius
C56-YS93]
gi|312110127|ref|YP_003988443.1| transcription elongation factor GreA [Geobacillus sp. Y4.1MC1]
gi|294978778|gb|EFG54374.1| GreA/GreB family elongation factor [Geobacillus thermoglucosidasius
C56-YS93]
gi|311215228|gb|ADP73832.1| transcription elongation factor GreA [Geobacillus sp. Y4.1MC1]
Length = 158
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 99/154 (64%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +G +K++QEL + + +R +++ I AR +GDLSEN+EY AAK+ Q E R
Sbjct: 5 KQYPMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVEAR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LEN+I A +I+ T + D ++ G +V+ +E G+++ Y IVG EAD G +S
Sbjct: 65 IQTLENMIRNAIIIEEDTENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISN 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPIA++L+G+ +G+ ++V PGGE +I+ V
Sbjct: 125 DSPIAKSLLGRRVGEEVTVQTPGGEMLVKIVAVK 158
>gi|326387386|ref|ZP_08208995.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
DSM 19370]
gi|326208042|gb|EGD58850.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
DSM 19370]
Length = 158
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+K+P+ +G++K+ EL+ + EERP+I+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 VEKLPMLQEGYEKLTAELKALR-EERPKIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ +LE+ I+RA++ID +T+SGDRI FGATV+L++ ++ YQIVG EADV+ G +S
Sbjct: 63 SIGDLEDKISRAQIIDPTTLSGDRIVFGATVTLLD-DADKPVRYQIVGLAEADVKRGRIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ RALIG+++ D + V P G+K Y + ++ +I
Sbjct: 122 YNSPLGRALIGRKVDDEVEVTVPSGDKFYVVEKIEFI 158
>gi|103486475|ref|YP_616036.1| transcription elongation factor GreA [Sphingopyxis alaskensis
RB2256]
gi|123253395|sp|Q1GUG9|GREA_SPHAL RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|98976552|gb|ABF52703.1| transcription elongation factor GreA [Sphingopyxis alaskensis
RB2256]
Length = 158
Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats.
Identities = 76/157 (48%), Positives = 112/157 (71%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+K+P+ ++G++K+ +L + ERP I+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 VEKVPMLAEGYEKLTAQLAALKA-ERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ +LE+ ++RA+VID +T+SGDRI FGATV+L +++ K YQIVG EAD ++G +S
Sbjct: 63 TIGDLEDKLSRAQVIDPTTLSGDRIVFGATVTLTDEDDKPVK-YQIVGQAEADAKAGKIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ RALIG+ + D I V P G+K Y + ++ +I
Sbjct: 122 YNSPLGRALIGRRVDDEIEVTVPSGDKYYLVTKIEFI 158
>gi|315638220|ref|ZP_07893402.1| transcription elongation factor GreA [Campylobacter upsaliensis
JV21]
gi|315481756|gb|EFU72378.1| transcription elongation factor GreA [Campylobacter upsaliensis
JV21]
Length = 161
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 64/156 (41%), Positives = 105/156 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K ++S GF+K+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E
Sbjct: 1 MEKEAMSSFGFEKLNAELKDLKDNQRPAVVVEIDVARSHGDLKENAEYHAAREKQALIES 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL I++RA+VID ++ D + FG++V +++ S + Y +VG E+D++ G +S
Sbjct: 61 RIAELGGILSRAQVIDPASYPHDSVKFGSSVLIMDLESEKESKYTLVGTCESDLEKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+ARA++GK+ GD V P GE +EI+ + +
Sbjct: 121 IASPLARAMLGKKEGDEFKVRLPKGESEFEIISIAY 156
>gi|312144281|ref|YP_003995727.1| transcription elongation factor GreA [Halanaerobium sp.
'sapolanicus']
gi|311904932|gb|ADQ15373.1| transcription elongation factor GreA [Halanaerobium sp.
'sapolanicus']
Length = 160
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 95/156 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++ +T +GFDK++ EL + Q E+R + K I AR +GD+SEN+EY AK Q E
Sbjct: 1 MAEQLMLTEEGFDKLENELDYLQNEKRREVAKRIKVAREFGDISENSEYDDAKNEQAFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ E++N++ A V+ ++ ++ G TV L ++ K +Y +VG EAD + +
Sbjct: 61 GRIKEIKNMLNNAHVVKDEDVTDTKVNLGTTVMLYNLDNDTKISYTLVGSAEADPLNHKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SPI +A++G +GD ++V P GE YEIL +
Sbjct: 121 SNESPIGKAILGHVIGDQVTVETPSGEAHYEILSIK 156
>gi|148284685|ref|YP_001248775.1| transcription elongation factor [Orientia tsutsugamushi str.
Boryong]
gi|229485768|sp|A5CE64|GREA_ORITB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|146740124|emb|CAM80312.1| transcription elongation factor [Orientia tsutsugamushi str.
Boryong]
Length = 159
Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats.
Identities = 76/157 (48%), Positives = 113/157 (71%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T KGF K++QEL+ + ER +I IS AR +GDLSENAEY+AAKE Q LN+
Sbjct: 1 MARFPITIKGFHKLEQELKHLKYVERLKITTDISTAREFGDLSENAEYKAAKERQLLNDK 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ +LEN + AEVI+I+ ++ + + FGA V L++ ++ + YQIVG+ EAD+ L+S
Sbjct: 61 KIYDLENKLANAEVIEITKINSNSVKFGARVVLLDLDTEKEVVYQIVGEYEADITQNLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I+SPIA+ALIGK+ GDII V P G + YE+L+V ++
Sbjct: 121 IASPIAQALIGKKAGDIIEVITPKGGRFYELLKVQYV 157
>gi|313902255|ref|ZP_07835661.1| transcription elongation factor GreA [Thermaerobacter subterraneus
DSM 13965]
gi|313467485|gb|EFR62993.1| transcription elongation factor GreA [Thermaerobacter subterraneus
DSM 13965]
Length = 159
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 97/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ ++++G K+++EL++ + +R + + I +AR +GD+SEN+EY+ AK Q E
Sbjct: 1 MDKELLLSAEGLRKLEEELQYLKSVKRREVAQRIKQAREFGDISENSEYEEAKNEQAFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE ++ A +++ + ++ G+TV L + ++G++ Y IVG EAD + +
Sbjct: 61 GRIIELEKMLRNARIVNDDEIDPTKVNIGSTVYLKDVDTGEEVQYTIVGSNEADPAALRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +AL G +GD++ V P G YEI+++
Sbjct: 121 SYQSPVGKALFGHSVGDVVEVKVPAGTLRYEIVRIE 156
>gi|71082811|ref|YP_265530.1| transcription elongation factor [Candidatus Pelagibacter ubique
HTCC1062]
gi|91762766|ref|ZP_01264731.1| Transcription elongation factor [Candidatus Pelagibacter ubique
HTCC1002]
gi|123775546|sp|Q4FPG2|GREA_PELUB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71061924|gb|AAZ20927.1| Transcription elongation factor [Candidatus Pelagibacter ubique
HTCC1062]
gi|91718568|gb|EAS85218.1| Transcription elongation factor [Candidatus Pelagibacter ubique
HTCC1002]
Length = 158
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 75/158 (47%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK P+T+ G + +++EL + ++++RP+I+ AISEAR++GDL ENAEY AAKE Q+ NEG
Sbjct: 1 MDKEPITADGLESLKEELIFLKEKKRPQIVAAISEARSHGDLKENAEYHAAKEEQSHNEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+ +II RA VID++ MS D ++ FG+TV L ++G+K Y+IVG EAD+Q L+
Sbjct: 61 RITEINDIIARANVIDVTKMSNDGKVIFGSTVDLENLDTGEKITYKIVGKDEADLQKKLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPI R LIGK D++ + P G K +EI V ++
Sbjct: 121 FFQSPIGRGLIGKNKNDLVEIKTPAGVKNFEIKDVKYV 158
>gi|34557197|ref|NP_907012.1| transcription elongation factor GreA [Wolinella succinogenes DSM
1740]
gi|81833097|sp|Q7M9N2|GREA_WOLSU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|34482913|emb|CAE09912.1| TRANSCRIPTION ELONGATION FACTOR GREA TRANSCRIPT CLEAVAGE FACTORGREA
[Wolinella succinogenes]
Length = 162
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T G++K+Q+EL+ ++ ERP+I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MQKEPMTIYGYEKLQRELKELKEVERPQIVKEIDIARGHGDLKENAEYHAAKERQLFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ EL I++R +V+D +T++ ++I+FG+T +++ ++ Y IVG E++ G +S
Sbjct: 61 RINELSEILSRTQVVDPATITHEKISFGSTFKVMDLDTEFVYEYTIVGAPESNPDRGFIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+AR LIGK GD I+ P GE YE+L+V +
Sbjct: 121 FYSPLARQLIGKVPGDEINAKLPNGEIDYEVLEVYY 156
>gi|153835620|ref|ZP_01988287.1| transcription elongation factor GreA [Vibrio harveyi HY01]
gi|148867771|gb|EDL67020.1| transcription elongation factor GreA [Vibrio harveyi HY01]
Length = 157
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 110/158 (69%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G ++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQLLRTELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E + +VID+++M ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKPSVVQVIDVTSMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIAR LIGK GD + + PGG K +EI V +I
Sbjct: 120 SISSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157
>gi|238751148|ref|ZP_04612643.1| Transcription elongation factor greB [Yersinia rohdei ATCC 43380]
gi|238710626|gb|EEQ02849.1| Transcription elongation factor greB [Yersinia rohdei ATCC 43380]
Length = 169
Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + EL + +EERP + +A+SEA A GD SENAEY K+ +
Sbjct: 5 MSKSNYITREGWQALDTELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 64
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V + SG+++ +++VG E D +
Sbjct: 65 RRVRFLTKRLEVLKIVDPDPRQEGKVYFGAWVRVEN-ESGEQRIFRLVGPDEFDPAKKWI 123
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D ++V P GE Y IL++ +
Sbjct: 124 SIDSPVARALIGKQVDDEVTVQTPNGEAIYCILEIRY 160
>gi|319760241|ref|YP_004124179.1| transcription elongation factor GreA [Candidatus Blochmannia vafer
str. BVAF]
gi|318038955|gb|ADV33505.1| transcription elongation factor GreA [Candidatus Blochmannia vafer
str. BVAF]
Length = 160
Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 107/158 (67%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G ++++++L + + RP I K+ISEAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKKFPMTLRGVEQLREKLDYLKNVLRPIITKSISEARRHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ ++D++ +S ++ FG TV + + KK Y+IVGD E++++ ++
Sbjct: 61 RIREIEYKLSNVYIVDVTKVISDKKVVFGVTVCIENVITQCKKIYRIVGDDESNLKKNMI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SISSPIA+ LIG + GDI+ ++ P G+ Y I+++ ++
Sbjct: 121 SISSPIAQGLIGHKEGDIVLISTPNGKIEYRIVKIEYL 158
>gi|313623703|gb|EFR93852.1| transcription elongation factor GreA [Listeria innocua FSL J1-023]
Length = 175
Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 91/152 (59%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+
Sbjct: 22 FPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRIT 81
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+EN A++ID + + G TV+ +E G+++ Y IVG EAD G +S S
Sbjct: 82 TIENXXXNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDS 141
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA+ L+G + G+ +++ P G+ + +I ++
Sbjct: 142 PIAKGLLGHKEGEEVTIQTPAGDMSVKIEKIT 173
>gi|125623471|ref|YP_001031954.1| transcription elongation factor greA [Lactococcus lactis subsp.
cremoris MG1363]
gi|166200668|sp|A2RIW3|GREA_LACLM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|124492279|emb|CAL97210.1| transcription elongation factor greA [Lactococcus lactis subsp.
cremoris MG1363]
gi|300070217|gb|ADJ59617.1| transcription elongation factor GreA [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 156
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 71/155 (45%), Positives = 104/155 (67%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M P+T +G DK++ EL + +RP +I I AR+YGDLSEN+EY+AAK+ Q E
Sbjct: 1 MEKTFPMTKEGLDKLKAELENLKLVKRPEVIDRIKVARSYGDLSENSEYEAAKDEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ +E +I AE++D + ++ D +A G V+ VE D+++YQIVG EAD +G +
Sbjct: 61 GRISTVETMIRYAEIVDNAKIAKDEVALGKNVTFVEVGETDEESYQIVGTAEADPFTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPIAR LIGK++GDI+ V P GE T +I++V
Sbjct: 121 SNESPIARVLIGKKVGDIVDVPLPVGEMTVKIVKV 155
>gi|238765202|ref|ZP_04626133.1| Transcription elongation factor greB [Yersinia kristensenii ATCC
33638]
gi|238696585|gb|EEP89371.1| Transcription elongation factor greB [Yersinia kristensenii ATCC
33638]
Length = 165
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ +
Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPIVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +V+D ++ FGA V + S +++ +++VG E D +
Sbjct: 61 RRVRFLTKRLEVLKVVDPDPRQEGKVYFGAWVRVEN-ESEEQRIFRLVGPDEFDPAKKWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D ++V P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156
>gi|218885487|ref|YP_002434808.1| transcription elongation factor GreA [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|226737010|sp|B8DJL8|GREA_DESVM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|218756441|gb|ACL07340.1| transcription elongation factor GreA [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 160
Score = 163 bits (414), Expect = 5e-39, Method: Composition-based stats.
Identities = 70/156 (44%), Positives = 109/156 (69%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP++++G+D++ +EL + ERP II+AI EAR GDL ENA Y AA+E Q + E
Sbjct: 1 MSSIPISTEGYDRLMKELERLKS-ERPAIIQAIKEAREEGDLKENAGYDAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ +E+ + + VI++ ++SGD++ FGATV + + +SG+ K Y ++G EAD G +S
Sbjct: 60 RISYIESRMAQFNVINLDSLSGDKVMFGATVEIEDLDSGEAKRYTLLGPDEADYAQGTIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+ARAL+GKE GD I V+AP G +YEI+ V +
Sbjct: 120 VLSPVARALLGKEEGDEIVVDAPRGRISYEIISVAF 155
>gi|261250302|ref|ZP_05942878.1| transcription elongation factor GreA [Vibrio orientalis CIP 102891]
gi|260939418|gb|EEX95404.1| transcription elongation factor GreA [Vibrio orientalis CIP 102891]
Length = 157
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 115/158 (72%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQQLRVELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG+TV+L++ ++ ++K YQIVGD EA++++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDCDTEEEKTYQIVGDDEANIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD + ++ PGG++ +EI +V ++
Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGDRDFEIDRVEYL 157
>gi|283778813|ref|YP_003369568.1| transcription elongation factor GreA [Pirellula staleyi DSM 6068]
gi|283437266|gb|ADB15708.1| transcription elongation factor GreA [Pirellula staleyi DSM 6068]
Length = 164
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 102/157 (64%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D IP+T +G+ K++ EL + + P I + I++ARA GDL ENAEY A +E Q L +
Sbjct: 1 MDDYIPMTREGYAKLKAELDRMENVDMPDITQKIADARAEGDLKENAEYHAQREAQGLLQ 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ + N +++A +ID STM D+++FG TV + + + +++ + +VG E D +G +
Sbjct: 61 AKINLIRNKLSKASIIDPSTMPRDQVSFGTTVLVKDIDMDEEEEFTLVGAGEEDYNAGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+ +AL+GK++GD++ V AP G EIL + +
Sbjct: 121 LITSPLGQALVGKKIGDVVDVPAPKGSYQLEILTLKF 157
>gi|169794963|ref|YP_001712756.1| transcription elongation factor GreA [Acinetobacter baumannii AYE]
gi|184159251|ref|YP_001847590.1| transcription elongation factor GreA [Acinetobacter baumannii
ACICU]
gi|213157626|ref|YP_002320424.1| transcription elongation factor GreA [Acinetobacter baumannii
AB0057]
gi|215482514|ref|YP_002324702.1| Transcription elongation factor greA (Transcript cleavage
factorgreA) [Acinetobacter baumannii AB307-0294]
gi|260556445|ref|ZP_05828663.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
19606]
gi|301346071|ref|ZP_07226812.1| transcription elongation factor GreA [Acinetobacter baumannii
AB056]
gi|301511499|ref|ZP_07236736.1| transcription elongation factor GreA [Acinetobacter baumannii
AB058]
gi|301595422|ref|ZP_07240430.1| transcription elongation factor GreA [Acinetobacter baumannii
AB059]
gi|332855122|ref|ZP_08435705.1| transcription elongation factor GreA [Acinetobacter baumannii
6013150]
gi|332868230|ref|ZP_08438072.1| transcription elongation factor GreA [Acinetobacter baumannii
6013113]
gi|332876148|ref|ZP_08443930.1| transcription elongation factor GreA [Acinetobacter baumannii
6014059]
gi|169147890|emb|CAM85753.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Acinetobacter baumannii AYE]
gi|183210845|gb|ACC58243.1| Transcription elongation factor [Acinetobacter baumannii ACICU]
gi|213056786|gb|ACJ41688.1| transcription elongation factor GreA [Acinetobacter baumannii
AB0057]
gi|213989115|gb|ACJ59414.1| Transcription elongation factor greA (Transcript cleavage
factorgreA) [Acinetobacter baumannii AB307-0294]
gi|260409704|gb|EEX03004.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
19606]
gi|322509165|gb|ADX04619.1| greA [Acinetobacter baumannii 1656-2]
gi|323519193|gb|ADX93574.1| transcription elongation factor GreA [Acinetobacter baumannii
TCDC-AB0715]
gi|332727625|gb|EGJ59044.1| transcription elongation factor GreA [Acinetobacter baumannii
6013150]
gi|332733491|gb|EGJ64661.1| transcription elongation factor GreA [Acinetobacter baumannii
6013113]
gi|332735646|gb|EGJ66691.1| transcription elongation factor GreA [Acinetobacter baumannii
6014059]
Length = 158
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 62/146 (42%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A+VID+ + R+ FG TV++ ++ ++K Y+IVGD EAD + +
Sbjct: 61 RIQDIEGKLGAAQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S++SPIAR L+GK GD + + P G
Sbjct: 121 SVNSPIARGLLGKNEGDEVKITTPQG 146
>gi|302037858|ref|YP_003798180.1| transcription elongation factor GreA [Candidatus Nitrospira
defluvii]
gi|300605922|emb|CBK42255.1| Transcription elongation factor GreA [Candidatus Nitrospira
defluvii]
Length = 158
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 69/152 (45%), Positives = 104/152 (68%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T KG++ ++ EL + ERPR+I+AI+EARA+GDLSENAEY AAKE Q E R+AE
Sbjct: 4 PITRKGYEALKAELDRLHKVERPRVIEAIAEARAHGDLSENAEYDAAKERQGFIEARLAE 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + +IDI+ + + + FGATV L+E+ + KK Y +VG EAD++ +S+ SP
Sbjct: 64 LKGKLADCRIIDIAGRTSETVVFGATVVLIEQEAQAKKQYTLVGQDEADLKFSRISVQSP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ RALIGK +GD++ V P YE++++ +
Sbjct: 124 VGRALIGKRVGDMVEVTTPAKIVEYEVMEIRF 155
>gi|256850855|ref|ZP_05556244.1| transcription elongation factor GreB [Lactobacillus jensenii
27-2-CHN]
gi|260661066|ref|ZP_05861980.1| transcription elongation factor GreB [Lactobacillus jensenii
115-3-CHN]
gi|282934474|ref|ZP_06339729.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1]
gi|297205729|ref|ZP_06923124.1| transcription elongation factor GreA [Lactobacillus jensenii
JV-V16]
gi|256615917|gb|EEU21105.1| transcription elongation factor GreB [Lactobacillus jensenii
27-2-CHN]
gi|260548003|gb|EEX23979.1| transcription elongation factor GreB [Lactobacillus jensenii
115-3-CHN]
gi|281301421|gb|EFA93710.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1]
gi|297148855|gb|EFH29153.1| transcription elongation factor GreA [Lactobacillus jensenii
JV-V16]
Length = 158
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M K P+T+ G +K++ EL+ + +RP +I+ I AR+YGDLSEN+EY AAK+ Q+
Sbjct: 1 MPQKTYPMTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E ++ A+VID ++ + ++ G TV+ E D + Y IVG E+D +G
Sbjct: 61 EQRIAQVEQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK GD +S++ PGG I V
Sbjct: 121 ISNDSPIAQALLGKHKGDTVSISTPGGSFDVVINDVK 157
>gi|260549215|ref|ZP_05823435.1| transcription elongation factor greA [Acinetobacter sp. RUH2624]
gi|260407621|gb|EEX01094.1| transcription elongation factor greA [Acinetobacter sp. RUH2624]
Length = 158
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 62/146 (42%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPEGKIALEKELQHLKSVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A+VID+ + R+ FG TV++ ++ ++K Y+IVGD EAD + +
Sbjct: 61 RIQDIEGKLGAAQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S++SPIAR L+GK GD + + P G
Sbjct: 121 SVNSPIARGLLGKNEGDEVKITTPQG 146
>gi|153950771|ref|YP_001402929.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
IP 31758]
gi|152962266|gb|ABS49727.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
IP 31758]
Length = 171
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ +
Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V + +++ +++VG E D +
Sbjct: 61 RRVRFLAKRLEVLKIVDPDPRQEGKVFFGAWVRVEN-EQEEQRIFRLVGPDEFDPAKKWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D ++V P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156
>gi|262199269|ref|YP_003270478.1| transcription elongation factor GreB [Haliangium ochraceum DSM
14365]
gi|262082616|gb|ACY18585.1| transcription elongation factor GreB [Haliangium ochraceum DSM
14365]
Length = 173
Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 83/152 (54%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G +++EL ERPR+ + +++A A GD SENAEY K + R+
Sbjct: 14 YITPEGARVLREELEQLWLVERPRVTQEVADAAAQGDRSENAEYIYGKRRLREIDRRVRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V+ R+ FGA V+L + G + Y+IVG E DV +G +S+ +P
Sbjct: 74 LGKRLDSLTVVSEPPSDPKRVFFGAWVTLEDDEDGKEVVYRIVGPDEFDVSAGKISMDAP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ RAL+GK GD ++V P GE Y I++V +
Sbjct: 134 VGRALLGKREGDEVTVKRPKGEVVYTIVEVRY 165
>gi|229543750|ref|ZP_04432810.1| transcription elongation factor GreA [Bacillus coagulans 36D1]
gi|229328170|gb|EEN93845.1| transcription elongation factor GreA [Bacillus coagulans 36D1]
Length = 156
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 100/158 (63%), Gaps = 4/158 (2%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + P+T G +K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q
Sbjct: 1 MAQEKVYPMTQDGKEKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ +EN+I A++I+ D ++ G +V+ VE G+++ Y IVG EAD G
Sbjct: 61 VEGRITTIENMIRNAKIIEDD--GTDTVSLGKSVTFVELPDGEEETYTIVGSAEADPFEG 118
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA++L+GK +G+ ++V PGG+ +I+ +
Sbjct: 119 KISNDSPIAKSLLGKSVGEEVTVQTPGGDMRVKIISIQ 156
>gi|81428983|ref|YP_395983.1| transcription elongation factor GreA [Lactobacillus sakei subsp.
sakei 23K]
gi|78610625|emb|CAI55676.1| Transcription elongation factor GreA (Transcriptcleavage factor
GreA) [Lactobacillus sakei subsp. sakei 23K]
Length = 157
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 103/157 (65%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M K P+T++G + + +EL + +RP +I I AR++GDLSEN+EY++AK+ Q+
Sbjct: 1 MAQKKFPMTAEGKENLAKELENLKMVKRPEVIDRIKIARSFGDLSENSEYESAKDEQSSL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ E+EN++ AEVID+ ++ D IA G TVS + G+++ YQIVG E+D +G
Sbjct: 61 ETRIVEVENMLRFAEVIDVDNIAVDEIAVGKTVSFTDDEDGEEETYQIVGAAESDPFNGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK +GD + V PGG+ I +V
Sbjct: 121 ISNDSPIAQALVGKHVGDKVVVQTPGGDMHVTITEVK 157
>gi|16079786|ref|NP_390610.1| transcription elongation factor GreA [Bacillus subtilis subsp.
subtilis str. 168]
gi|221310668|ref|ZP_03592515.1| transcription elongation factor GreA [Bacillus subtilis subsp.
subtilis str. 168]
gi|221314991|ref|ZP_03596796.1| transcription elongation factor GreA [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221319912|ref|ZP_03601206.1| transcription elongation factor GreA [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221324193|ref|ZP_03605487.1| transcription elongation factor GreA [Bacillus subtilis subsp.
subtilis str. SMY]
gi|321312257|ref|YP_004204544.1| transcription elongation factor GreA [Bacillus subtilis BSn5]
gi|3183527|sp|P80240|GREA_BACSU RecName: Full=Transcription elongation factor greA; AltName:
Full=General stress protein 20M; Short=GSP20M; AltName:
Full=Transcript cleavage factor greA
gi|2635178|emb|CAB14674.1| transcription elongation factor [Bacillus subtilis subsp. subtilis
str. 168]
gi|291485137|dbj|BAI86212.1| transcription elongation factor GreA [Bacillus subtilis subsp.
natto BEST195]
gi|320018531|gb|ADV93517.1| transcription elongation factor GreA [Bacillus subtilis BSn5]
Length = 157
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 103/158 (65%), Gaps = 3/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + P+T++G K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q
Sbjct: 1 MAQEKVFPMTAEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ LEN+I A++I+ S + + G TV+ VE GD+++Y IVG EAD G
Sbjct: 61 VEGRVTTLENMIRNAKIIEDDGGS-NVVGLGKTVTFVELPDGDEESYTIVGSAEADPFEG 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA++L+GK++ + ++V PGGE +I+++
Sbjct: 120 KISNDSPIAKSLLGKKVDEEVTVQTPGGEMLVKIVKIS 157
>gi|189184202|ref|YP_001937987.1| GreA protein [Orientia tsutsugamushi str. Ikeda]
gi|238692019|sp|B3CTQ6|GREA_ORITI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189180973|dbj|BAG40753.1| GreA protein [Orientia tsutsugamushi str. Ikeda]
Length = 159
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 76/157 (48%), Positives = 114/157 (72%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T KGF K++QEL+ + ER +I IS AR +GDLSENAEY+AAKE Q LN+
Sbjct: 1 MARFPITIKGFHKLEQELKHLKYVERLKITTDISTAREFGDLSENAEYKAAKERQLLNDK 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ +LEN + AEVI+I+ ++ + + FGA V L+++++ + YQIVG+ EAD+ L+S
Sbjct: 61 KIYDLENKLANAEVIEITKINSNSVKFGARVVLLDRDTEKEVVYQIVGEYEADITQNLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I+SPIA+ALIGK+ GDII V P G + YE+L+V ++
Sbjct: 121 IASPIAQALIGKKAGDIIEVITPKGGRFYELLKVQYV 157
>gi|218233280|ref|YP_002369189.1| transcription elongation factor GreA [Bacillus cereus B4264]
gi|228923131|ref|ZP_04086422.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228941547|ref|ZP_04104096.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228960651|ref|ZP_04122296.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228974477|ref|ZP_04135044.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|229071888|ref|ZP_04205099.1| Transcription elongation factor greA [Bacillus cereus F65185]
gi|229129660|ref|ZP_04258628.1| Transcription elongation factor greA [Bacillus cereus BDRD-Cer4]
gi|229152583|ref|ZP_04280772.1| Transcription elongation factor greA [Bacillus cereus m1550]
gi|229180655|ref|ZP_04307995.1| Transcription elongation factor greA [Bacillus cereus 172560W]
gi|229192591|ref|ZP_04319552.1| Transcription elongation factor greA [Bacillus cereus ATCC 10876]
gi|218161237|gb|ACK61229.1| transcription elongation factor GreA [Bacillus cereus B4264]
gi|228590898|gb|EEK48756.1| Transcription elongation factor greA [Bacillus cereus ATCC 10876]
gi|228602800|gb|EEK60281.1| Transcription elongation factor greA [Bacillus cereus 172560W]
gi|228630844|gb|EEK87484.1| Transcription elongation factor greA [Bacillus cereus m1550]
gi|228653777|gb|EEL09647.1| Transcription elongation factor greA [Bacillus cereus BDRD-Cer4]
gi|228711184|gb|EEL63148.1| Transcription elongation factor greA [Bacillus cereus F65185]
gi|228785194|gb|EEM33206.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228799015|gb|EEM45987.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228818103|gb|EEM64179.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228836510|gb|EEM81860.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 175
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 24 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S
Sbjct: 84 QLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 143
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 144 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 175
>gi|296284018|ref|ZP_06862016.1| transcription elongation factor GreA [Citromicrobium bathyomarinum
JL354]
Length = 155
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 75/157 (47%), Positives = 119/157 (75%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+ ++G++++ +L+ + ERP+I+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 1 MEKVPMLAEGYERLTTDLKALRA-ERPKIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AE+E+ +TRA++ID ST+SGD++ FGATV+L++++ K YQIVG EAD +S +S
Sbjct: 60 QIAEIEDRVTRAQIIDPSTLSGDKVVFGATVTLLDEDDKPIK-YQIVGQTEADAKSARIS 118
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ARALIGK++G+ + V P G+K Y + ++ +I
Sbjct: 119 YNSPLARALIGKKVGEEVEVTVPSGDKFYLVDKIEFI 155
>gi|33519573|ref|NP_878405.1| transcription elongation factor GreA [Candidatus Blochmannia
floridanus]
gi|33517236|emb|CAD83619.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Candidatus Blochmannia floridanus]
Length = 162
Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++IP+T G +K++++L + + RP IIK ISEAR +GDL EN+EY AA+E Q EGR
Sbjct: 6 ERIPMTQNGVEKLRKKLEYLKNVLRPEIIKNISEARKHGDLKENSEYHAAREQQGFCEGR 65
Query: 63 MAELENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ E+E ++ A +ID++ ++ ++ + FG TV + + ++ K+ Y+IVGD EA+ + ++S
Sbjct: 66 IQEIEFKLSNAYIIDVTKVAEEQKVVFGVTVCVEKLDTQSKQVYRIVGDDEANYKKNMIS 125
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I+SPIAR LIG +GDI+++N P G TY+I+Q+ ++
Sbjct: 126 INSPIARGLIGNTIGDIVTINTPQGNITYKIIQIQYV 162
>gi|20808737|ref|NP_623908.1| transcription elongation factor GreA [Thermoanaerobacter
tengcongensis MB4]
gi|25452988|sp|Q8R7N0|GREA_THETN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|20517379|gb|AAM25512.1| Transcription elongation factor [Thermoanaerobacter tengcongensis
MB4]
Length = 157
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 95/156 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G K+++EL + + +R + + I +ARA+GDLSEN+EY AK Q E
Sbjct: 1 MSKPVILTYEGLKKLEEELEYLKTVKRAEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+A LE ++ A+VID + D ++ G TV + ++ ++ Y IVG EAD + +
Sbjct: 61 GRIATLEAMLKNAKVIDEEDIKLDEVSIGCTVKVFDETYNEEVEYTIVGSAEADPMNNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SPI +AL+GK++G+ ISV P G +IL++
Sbjct: 121 SDESPIGKALLGKKVGETISVEVPAGVIKLKILEIR 156
>gi|323700312|ref|ZP_08112224.1| transcription elongation factor GreA [Desulfovibrio sp. ND132]
gi|323460244|gb|EGB16109.1| transcription elongation factor GreA [Desulfovibrio desulfuricans
ND132]
Length = 164
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 110/157 (70%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+IP++ +GF+KI QEL + +RP II+AI+EARA GDLSENA Y AA+E Q + E
Sbjct: 1 MDRIPISKQGFEKISQELEDLKA-QRPAIIQAIAEARAEGDLSENAGYDAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R++ + + + +V+D+ +SG+R FGATV + + ++ +++ + ++G +AD + G +S
Sbjct: 60 RISYINSHMPLFDVLDLDALSGERAIFGATVEVEDIDTEERRTFTLLGPDDADHKKGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SP+ +A++GKE GD + V+AP G YEI+ V ++
Sbjct: 120 VLSPMGQAILGKEEGDEVIVDAPRGRIEYEIVSVQFL 156
>gi|116511431|ref|YP_808647.1| transcription elongation factor GreA [Lactococcus lactis subsp.
cremoris SK11]
gi|123025545|sp|Q030Z7|GREA_LACLS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116107085|gb|ABJ72225.1| transcription elongation factor GreA [Lactococcus lactis subsp.
cremoris SK11]
Length = 156
Score = 163 bits (413), Expect = 8e-39, Method: Composition-based stats.
Identities = 70/155 (45%), Positives = 105/155 (67%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M P+T +G DK++ EL + +RP +I I AR+YGDLSEN+EY+AAK+ Q E
Sbjct: 1 MEKTFPMTKEGLDKLKAELENLKLVKRPEVIDRIKVARSYGDLSENSEYEAAKDEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ +E +I AE+++ + ++ D +A G V+ VE D+++YQIVG EAD +G +
Sbjct: 61 GRISTVETMIRYAEIVNNAKIAKDEVALGKNVTFVEVGETDEESYQIVGTAEADPFTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPIAR LIGK++GDI++V P GE T +I++V
Sbjct: 121 SNESPIARVLIGKKVGDIVNVPLPVGEMTVKIVKV 155
>gi|47093417|ref|ZP_00231182.1| transcription elongation factor GreA [Listeria monocytogenes str.
4b H7858]
gi|300764839|ref|ZP_07074829.1| transcription elongation factor GreA [Listeria monocytogenes FSL
N1-017]
gi|47018196|gb|EAL08964.1| transcription elongation factor GreA [Listeria monocytogenes str.
4b H7858]
gi|300514515|gb|EFK41572.1| transcription elongation factor GreA [Listeria monocytogenes FSL
N1-017]
Length = 152
Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 92/150 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K++ EL+ + +R +++ I AR++GDLSEN+EY +AK+ Q EGR+ +
Sbjct: 1 MTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRITTI 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN+I A++ID + + G TV+ +E G+++ Y IVG EAD G +S SPI
Sbjct: 61 ENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
A+ L+G + G+ +++ P G+ + +I ++
Sbjct: 121 AKGLLGHKEGEEVTIQTPAGDMSVKIEKIT 150
>gi|268592314|ref|ZP_06126535.1| transcription elongation factor GreB [Providencia rettgeri DSM
1131]
gi|291312097|gb|EFE52550.1| transcription elongation factor GreB [Providencia rettgeri DSM
1131]
Length = 161
Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G+D + +EL++ +EERPR+ +++SEA A GD SENAEY K+ +
Sbjct: 1 MTKSLLITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + + +I+ R+ FGA V L ++N + ++IVG E + +
Sbjct: 61 RRIRFLSKRLDQLRIIEPDPRQEGRVFFGAWVKLEDENEN-IRIFRIVGADEFNPTKQWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D I+VN PGG+ TY +L++ +
Sbjct: 120 SIDSPVARALIGKQVDDEITVNTPGGQVTYFVLEISY 156
>gi|153207473|ref|ZP_01946173.1| transcription elongation factor GreA [Coxiella burnetii 'MSU Goat
Q177']
gi|161831566|ref|YP_001597133.1| transcription elongation factor GreA [Coxiella burnetii RSA 331]
gi|165918942|ref|ZP_02219028.1| transcription elongation factor GreA [Coxiella burnetii RSA 334]
gi|120576604|gb|EAX33228.1| transcription elongation factor GreA [Coxiella burnetii 'MSU Goat
Q177']
gi|161763433|gb|ABX79075.1| transcription elongation factor GreA [Coxiella burnetii RSA 331]
gi|165917339|gb|EDR35943.1| transcription elongation factor GreA [Coxiella burnetii RSA 334]
Length = 159
Score = 163 bits (412), Expect = 9e-39, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 103/159 (64%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M IP+T G K++ EL + ERP++I AI+EARA+GDL ENAEY AA+E Q E
Sbjct: 1 MQTIIPITVNGVTKLRTELETLKTVERPKVIAAIAEARAHGDLKENAEYHAARERQGFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
GR+ E+E + ++IDIS + ++ FGATV+L+ + + YQI+G EA+++
Sbjct: 61 GRILEIEAKLANCQIIDISQIPNEGKVIFGATVTLLNLETQTEVTYQIMGVDEANLKENK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SISSP ARA+IGK + D+I V P G YEI+ V ++
Sbjct: 121 ISISSPTARAMIGKYIEDVIEVTTPEGPVEYEIVDVEYL 159
>gi|254522230|ref|ZP_05134285.1| transcriptional elongation factor [Stenotrophomonas sp. SKA14]
gi|219719821|gb|EED38346.1| transcriptional elongation factor [Stenotrophomonas sp. SKA14]
Length = 152
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 72/149 (48%), Positives = 110/149 (73%), Gaps = 1/149 (0%)
Query: 11 GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
G K++ EL + +RP++I AI+EAR +GDL ENAEY AA+E Q EGR+ +LE +
Sbjct: 3 GAQKLRDELDHLKSVKRPKVIAAIAEAREHGDLKENAEYHAAREEQGFIEGRIKQLEGEL 62
Query: 71 TRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ AE+ID+S ++ G ++ FGA+V+L + + ++K YQIVGD EAD++ GL++ISSP+ARA
Sbjct: 63 SHAEIIDVSKLNAGSKVVFGASVTLADVETDEEKKYQIVGDLEADIKLGLIAISSPVARA 122
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVLWI 158
+IGK GD I ++AP G++ YEI+ V ++
Sbjct: 123 MIGKLEGDSIVIDAPAGQREYEIVSVSYV 151
>gi|87200244|ref|YP_497501.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
gi|123722531|sp|Q2G656|GREA_NOVAD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|87135925|gb|ABD26667.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
Length = 158
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 75/157 (47%), Positives = 116/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+K+P+ ++G++K+ EL+ + EERPRI+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 VEKLPMLAEGYEKLTAELKALR-EERPRIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+A+LE+ ++RA++ID +T+SGD+I FGATV+L++ + YQIVG EAD + G++S
Sbjct: 63 TIADLEDRVSRAQIIDPTTLSGDKIIFGATVTLLD-DDEKPVKYQIVGPYEADAKKGMIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ +ALIG+++ + I V P G+K Y + ++ +I
Sbjct: 122 YNSPLGKALIGRKVDEEIEVTVPSGDKFYLVQKIEFI 158
>gi|254458168|ref|ZP_05071594.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD
1]
gi|207085004|gb|EDZ62290.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD
1]
Length = 165
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 2 VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+DK+ P+T G++K+Q E+R ++ +RP I+KAI EA +GDL ENAEY AAKE Q +
Sbjct: 1 MDKVEPMTLFGYEKLQAEVRDLKEVKRPEIVKAIEEALEHGDLKENAEYHAAKEAQRNID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+L +I+ + ++D S + +I+FG+TV + + +S + Y IVG E++ GL+
Sbjct: 61 NRLADLASILGCSRIVDPSELEHAKISFGSTVVMTDMDSDETVTYTIVGGCESNPDMGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+A+ L+G+E GD + V PGG K YEI +V +
Sbjct: 121 SFASPLAKQLLGREEGDEVKVVLPGGAKEYEIEEVKY 157
>gi|126642719|ref|YP_001085703.1| transcription elongation factor GreA [Acinetobacter baumannii ATCC
17978]
gi|239503380|ref|ZP_04662690.1| transcription elongation factor GreA [Acinetobacter baumannii
AB900]
gi|126388603|gb|ABO13101.1| transcription elongation factor [Acinetobacter baumannii ATCC
17978]
Length = 158
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 62/146 (42%), Positives = 97/146 (66%), Gaps = 1/146 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A+VID+ + R+ FG TV++ ++ ++K Y+IVGD EAD + +
Sbjct: 61 RIQDIEGKLGAAQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S++SPIAR L+GK GD + + P G
Sbjct: 121 SVNSPIARGLLGKNEGDEVKITTPQG 146
>gi|238788974|ref|ZP_04632764.1| Transcription elongation factor greB [Yersinia frederiksenii ATCC
33641]
gi|238723001|gb|EEQ14651.1| Transcription elongation factor greB [Yersinia frederiksenii ATCC
33641]
Length = 165
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + EL + +EERP + +A+SEA A GD SENAEY K+ +
Sbjct: 1 MAKSNYITREGWQALDHELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V + + +++ +++VG E D +
Sbjct: 61 RRVRFLTKRLEVLKIVDPDPRQEGKVYFGAWVRVEN-EAAEQRIFRLVGPDEFDPAKKWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D ++V P GE TY IL + +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILDIRY 156
>gi|218899548|ref|YP_002447959.1| transcription elongation factor GreA [Bacillus cereus G9842]
gi|228967454|ref|ZP_04128483.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar sotto str. T04001]
gi|229048087|ref|ZP_04193660.1| Transcription elongation factor greA [Bacillus cereus AH676]
gi|229146950|ref|ZP_04275314.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST24]
gi|218545656|gb|ACK98050.1| transcription elongation factor GreA [Bacillus cereus G9842]
gi|228636549|gb|EEK93015.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST24]
gi|228723242|gb|EEL74614.1| Transcription elongation factor greA [Bacillus cereus AH676]
gi|228792231|gb|EEM39804.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 175
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 24 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S
Sbjct: 84 QLENMIRNAVIIKDNGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 143
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 144 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 175
>gi|167625072|ref|YP_001675366.1| transcription elongation factor GreA [Shewanella halifaxensis
HAW-EB4]
gi|167355094|gb|ABZ77707.1| transcription elongation factor GreA [Shewanella halifaxensis
HAW-EB4]
Length = 153
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 68/153 (44%), Positives = 108/153 (70%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++++EL + E RP+I +AI EAR GDL ENAEY AA+E Q L E R+ ++
Sbjct: 1 MTVVGAERLRKELDHLKFERRPKIAEAIGEARELGDLKENAEYHAAREEQGLCEARVRDI 60
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A++ID++TM + R+ FG+TV+++ ++ + Y+IVG+ EA+++ L+S+SSP
Sbjct: 61 EGKLSHAQIIDVTTMDNNGRVIFGSTVTILNLDTEGEVTYRIVGEDEANIRENLLSVSSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGK L D IS+ PGG +EI++V +I
Sbjct: 121 IARGLIGKNLDDEISIVTPGGTTDFEIIKVDYI 153
>gi|22127785|ref|NP_671208.1| transcription elongation factor GreB [Yersinia pestis KIM 10]
gi|45439998|ref|NP_991537.1| transcription elongation factor GreB [Yersinia pestis biovar
Microtus str. 91001]
gi|51598055|ref|YP_072246.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
IP 32953]
gi|108809325|ref|YP_653241.1| transcription elongation factor GreB [Yersinia pestis Antiqua]
gi|108814090|ref|YP_649857.1| transcription elongation factor GreB [Yersinia pestis Nepal516]
gi|145597385|ref|YP_001161460.1| transcription elongation factor GreB [Yersinia pestis Pestoides F]
gi|150260817|ref|ZP_01917545.1| transcription elongation factor [Yersinia pestis CA88-4125]
gi|165928050|ref|ZP_02223882.1| transcription elongation factor GreB [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165936194|ref|ZP_02224763.1| transcription elongation factor GreB [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010458|ref|ZP_02231356.1| transcription elongation factor GreB [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213294|ref|ZP_02239329.1| transcription elongation factor GreB [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399683|ref|ZP_02305207.1| transcription elongation factor GreB [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167418839|ref|ZP_02310592.1| transcription elongation factor GreB [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425709|ref|ZP_02317462.1| transcription elongation factor GreB [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468694|ref|ZP_02333398.1| transcription elongation factor GreB [Yersinia pestis FV-1]
gi|170022432|ref|YP_001718937.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
YPIII]
gi|186897255|ref|YP_001874367.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
PB1/+]
gi|218927346|ref|YP_002345221.1| transcription elongation factor GreB [Yersinia pestis CO92]
gi|229836384|ref|ZP_04456551.1| transcription elongation factor [Yersinia pestis Pestoides A]
gi|229839991|ref|ZP_04460150.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229842072|ref|ZP_04462227.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. India 195]
gi|229904627|ref|ZP_04519738.1| transcription elongation factor [Yersinia pestis Nepal516]
gi|270488160|ref|ZP_06205234.1| transcription elongation factor GreB [Yersinia pestis KIM D27]
gi|294502225|ref|YP_003566287.1| transcription elongation factor GreB [Yersinia pestis Z176003]
gi|25452997|sp|Q8ZJH2|GREB_YERPE RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|21960914|gb|AAM87459.1|AE013996_4 transcription elongation factor [Yersinia pestis KIM 10]
gi|45434853|gb|AAS60414.1| transcription elongation factor [Yersinia pestis biovar Microtus
str. 91001]
gi|51591337|emb|CAH23003.1| transcription elongation factor [Yersinia pseudotuberculosis IP
32953]
gi|108777738|gb|ABG20257.1| transcription elongation factor GreB [Yersinia pestis Nepal516]
gi|108781238|gb|ABG15296.1| transcription elongation factor GreB [Yersinia pestis Antiqua]
gi|115345957|emb|CAL18821.1| transcription elongation factor [Yersinia pestis CO92]
gi|145209081|gb|ABP38488.1| transcription elongation factor GreB [Yersinia pestis Pestoides F]
gi|149290225|gb|EDM40302.1| transcription elongation factor [Yersinia pestis CA88-4125]
gi|165915808|gb|EDR34416.1| transcription elongation factor GreB [Yersinia pestis biovar
Orientalis str. IP275]
gi|165919999|gb|EDR37300.1| transcription elongation factor GreB [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990548|gb|EDR42849.1| transcription elongation factor GreB [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205592|gb|EDR50072.1| transcription elongation factor GreB [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166962833|gb|EDR58854.1| transcription elongation factor GreB [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167052187|gb|EDR63595.1| transcription elongation factor GreB [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055399|gb|EDR65193.1| transcription elongation factor GreB [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169748966|gb|ACA66484.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
YPIII]
gi|186700281|gb|ACC90910.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
PB1/+]
gi|229678745|gb|EEO74850.1| transcription elongation factor [Yersinia pestis Nepal516]
gi|229690382|gb|EEO82436.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. India 195]
gi|229696357|gb|EEO86404.1| transcription elongation factor [Yersinia pestis biovar Orientalis
str. PEXU2]
gi|229706452|gb|EEO92459.1| transcription elongation factor [Yersinia pestis Pestoides A]
gi|262360304|gb|ACY57025.1| transcription elongation factor GreB [Yersinia pestis D106004]
gi|262364255|gb|ACY60812.1| transcription elongation factor GreB [Yersinia pestis D182038]
gi|270336664|gb|EFA47441.1| transcription elongation factor GreB [Yersinia pestis KIM D27]
gi|294352684|gb|ADE63025.1| transcription elongation factor GreB [Yersinia pestis Z176003]
gi|320013271|gb|ADV96842.1| transcription elongation factor [Yersinia pestis biovar Medievalis
str. Harbin 35]
Length = 171
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ +
Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V + +++ +++VG E D +
Sbjct: 61 RRVRFLAKRLEVLKIVDPDPRQEGKVFFGAWVRVEN-EQEEQRIFRLVGPDEFDPAKKWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D ++V P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156
>gi|237807290|ref|YP_002891730.1| transcription elongation factor GreB [Tolumonas auensis DSM 9187]
gi|237499551|gb|ACQ92144.1| transcription elongation factor GreB [Tolumonas auensis DSM 9187]
Length = 161
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G+ K++ EL++ + +RP + +A+SEA A GD SENAEY+ K +
Sbjct: 1 MKTNLITRAGWQKLEDELKYLWKVKRPEVTQAVSEAAALGDRSENAEYKEGKRELRSIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + ++++ S ++ FGA V L + GD +Y+IVG E D ++ ++
Sbjct: 61 RLRFLTKRLDALKIVEYSPQQEGKVYFGAWVELEN-DQGDIVHYRIVGTDEIDTKNNYIT 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALIGK++ D + VN P GEK + I ++ +
Sbjct: 120 IDSPMARALIGKQVDDEVRVNTPSGEKEWFINKIQY 155
>gi|87121705|ref|ZP_01077592.1| transcription elongation factor greA (transcript cleavage factor)
[Marinomonas sp. MED121]
gi|86162956|gb|EAQ64234.1| transcription elongation factor greA (transcript cleavage factor)
[Marinomonas sp. MED121]
Length = 158
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T +G ++++EL + ERPRII I+ AR +GDL ENAEY AA+E Q EG
Sbjct: 1 MRKVPMTVEGEARLREELGHLKSVERPRIINDIAIAREHGDLKENAEYHAAREEQGFAEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++ ++VID+ + ++ FG+T++L ++ + Y+IVGD EA+V+ +
Sbjct: 61 RIKEIEGKLSDSQVIDVKAIAHTGKVIFGSTITLFNVDTEETVTYRIVGDDEAEVKDKKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S +SPIA+ALIGK GD +++ P GE YEI V +
Sbjct: 121 SYASPIAKALIGKNEGDEVAIKIPSGEVVYEIESVEHL 158
>gi|313681690|ref|YP_004059428.1| transcription elongation factor grea [Sulfuricurvum kujiense DSM
16994]
gi|313154550|gb|ADR33228.1| transcription elongation factor GreA [Sulfuricurvum kujiense DSM
16994]
Length = 165
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 98/157 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T GF ++ EL + + P + I A+ YGDL EN+EY AA+E Q
Sbjct: 1 MEQKEPMTKYGFQRLSDELNTLKNIDLPAVNVEIDRAKEYGDLKENSEYHAAREKQAFIG 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AEL +I+RA+++D S + R++FG+TV L + S ++ Y IVG E++ GL+
Sbjct: 61 SRIAELGEVISRAQIVDPSELEHARVSFGSTVVLCDLESDEEVTYTIVGGCESNPDRGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+A+ L+G++ GD ++ PGG K +E+L+V +
Sbjct: 121 SFNSPLAKQLLGRQEGDELNAKLPGGTKNFEVLEVKY 157
>gi|300725195|ref|YP_003714523.1| transcription elongation factor and transcript cleavage
[Xenorhabdus nematophila ATCC 19061]
gi|297631740|emb|CBJ92459.1| transcription elongation factor and transcript cleavage
[Xenorhabdus nematophila ATCC 19061]
Length = 165
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ + ERP + +A+SEA A GD SENAEY K+ +
Sbjct: 1 MTKSHYITREGWHTLDQELKYLWKIERPNVTQAVSEAAALGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V + G++ +++VG E D +
Sbjct: 61 RRVRFLSKRLDILQIVDPDPRQEGKVFFGAWVKVEN-EQGEEHIFRLVGPDEFDPAKKWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+GK++ D ++V P G TY I Q+ +
Sbjct: 120 SIDSPVARALLGKQVDDEVTVMTPNGMATYWIRQIGY 156
>gi|70734327|ref|YP_257967.1| transcription elongation factor GreA [Pseudomonas fluorescens Pf-5]
gi|68348626|gb|AAY96232.1| transcription elongation factor GreA [Pseudomonas fluorescens Pf-5]
Length = 158
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 100/158 (63%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +G +++E + RP++ + I AR GDL ENAEY AA+E Q + E
Sbjct: 1 MNKYPMTVQGARALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + + VID++T+ ++ FG TV + + + YQIVG+ EAD++ G +
Sbjct: 61 RIRDIEGRLQNSVVIDVTTIPHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKLGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARALI KE GD+++V PGG YEI++V I
Sbjct: 121 SVGSPIARALIAKEEGDVVAVKTPGGVIEYEIVEVRHI 158
>gi|156936432|ref|YP_001440348.1| transcription elongation factor GreB [Cronobacter sakazakii ATCC
BAA-894]
gi|260599707|ref|YP_003212278.1| transcription elongation factor GreB [Cronobacter turicensis z3032]
gi|156534686|gb|ABU79512.1| hypothetical protein ESA_04333 [Cronobacter sakazakii ATCC BAA-894]
gi|260218884|emb|CBA34239.1| Transcription elongation factor greB [Cronobacter turicensis z3032]
Length = 157
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYEKLKKELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V + + GD K ++IVG E + +SI SP+
Sbjct: 66 TKCLENLKIVDYSPQQEGKVFFGAWVEVEN-DDGDVKRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE GD+ +V PGGE T+ + + ++
Sbjct: 125 ARALLKKEEGDVATVQTPGGEATWYVNAIEYV 156
>gi|223038587|ref|ZP_03608880.1| transcription elongation factor GreA [Campylobacter rectus RM3267]
gi|222879989|gb|EEF15077.1| transcription elongation factor GreA [Campylobacter rectus RM3267]
Length = 162
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + P+T G++KI EL+ + ERP I++ I AR++GDL ENAEY AA+E Q E
Sbjct: 1 MTE--PMTLFGYEKITNELKNLKTVERPNIVEEIDIARSHGDLKENAEYHAAREKQAFIE 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AEL +I++RA+VID S D++ FG+TV +++ + +K Y +VG E++++ GL+
Sbjct: 59 SRIAELSDIVSRAKVIDPSEYEHDKVKFGSTVVIMDVETELEKTYTLVGTPESNLERGLI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+A+ LIGK GD +++N P G EI+ V +
Sbjct: 119 SINSPLAKQLIGKSEGDEVALNLPNGRSDVEIVSVSY 155
>gi|154175152|ref|YP_001408890.1| transcription elongation factor GreA [Campylobacter curvus 525.92]
gi|112803753|gb|EAU01097.1| biopolymer transport ExbB protein [Campylobacter curvus 525.92]
Length = 162
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 65/152 (42%), Positives = 104/152 (68%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G++KI+ EL+ +Q +RP+I+ I AR++GDL ENAEY AAKE Q + R+AE
Sbjct: 4 PMTIYGYEKIEAELKDLRQVQRPQIVIEIDIARSHGDLKENAEYHAAKEKQAFIDTRIAE 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++ AEVID S+ DR+ FG++V++++ + + Y IVG E+++ GL+SI+SP
Sbjct: 64 LSTLLANAEVIDPSSYEHDRVRFGSSVTIMDVETEIEHTYTIVGISESNLDRGLISINSP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+AR L+GK GD +++N P G E+++V +
Sbjct: 124 LARQLLGKAEGDEVALNLPNGRSDVEVVEVCY 155
>gi|229081644|ref|ZP_04214139.1| Transcription elongation factor greA [Bacillus cereus Rock4-2]
gi|228701648|gb|EEL54139.1| Transcription elongation factor greA [Bacillus cereus Rock4-2]
Length = 175
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 10 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S
Sbjct: 70 QLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 129
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 130 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 161
>gi|242280745|ref|YP_002992874.1| transcription elongation factor GreA [Desulfovibrio salexigens DSM
2638]
gi|259647639|sp|C6BRV2|GREA_DESAD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|242123639|gb|ACS81335.1| transcription elongation factor GreA [Desulfovibrio salexigens DSM
2638]
Length = 160
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 108/156 (69%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP++ +GF KI+ EL ++ ERP +IKAI+EAR GDL EN Y AA+E Q + E
Sbjct: 1 MSTIPISKEGFAKIKAELASLKK-ERPEVIKAIAEAREEGDLKENGGYHAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ +E+ I + V+D++T+ G++I FGATV+L + ++G +K Y I+G E+D + G++S
Sbjct: 60 KINYIESRIPQFNVVDMTTLGGEKITFGATVTLEDIDTGAEKTYTIMGPDESDFKKGIIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ +AL+GK GD + VNAP G+ Y I+ V++
Sbjct: 120 IESPVGKALLGKIEGDEVVVNAPKGKIEYGIVSVIF 155
>gi|238797302|ref|ZP_04640803.1| Transcription elongation factor greB [Yersinia mollaretii ATCC
43969]
gi|238718939|gb|EEQ10754.1| Transcription elongation factor greB [Yersinia mollaretii ATCC
43969]
Length = 169
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + +EL + +EERP + A+SEA A GD SENAEY K+ +
Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTLAVSEAAAMGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +V+D ++ FGA V + + +++ +++VG E D +
Sbjct: 61 RRVRFLTKRLEVLKVVDPDPRQEGKVFFGAWVRVEN-EAEEQRIFRLVGPDEFDPAKKWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D ++V P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156
>gi|170727907|ref|YP_001761933.1| transcription elongation factor GreA [Shewanella woodyi ATCC 51908]
gi|169813254|gb|ACA87838.1| transcription elongation factor GreA [Shewanella woodyi ATCC 51908]
Length = 153
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 69/153 (45%), Positives = 106/153 (69%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G D++++EL + + E+RP+I +AI EAR GDL ENAEY AA+E Q L E R+ +L
Sbjct: 1 MTIVGADQLRKELDYLKFEKRPKIAEAIGEARELGDLKENAEYHAAREEQGLCEARVRDL 60
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A++ID++ M RI FG TV+++ ++ + Y+IVGD EA+++ L+S+SSP
Sbjct: 61 EGKLSNAQIIDVTKMQNTGRIIFGTTVTILNIDTDVETTYRIVGDDEANIKENLLSVSSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGK + D ++++ PGG YEI V +I
Sbjct: 121 IARGLIGKNVDDEVTISTPGGMTEYEITAVEYI 153
>gi|82523822|emb|CAI78564.1| transcription elongation factor GreA [uncultured candidate division
OP8 bacterium]
Length = 156
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 64/156 (41%), Positives = 109/156 (69%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++ P+T +G K++ EL+ ++ +RP +KAI EAR +GDL ENA+++ AK+ Q + G
Sbjct: 1 MERYPITPEGLKKLEAELKRLREVDRPANVKAIEEARGHGDLRENADFKCAKDEQAMIVG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+A L+ I+ A VID S +SG+R+ FGA V L ++G+ Y++VG+ EAD++ G +S
Sbjct: 61 RIAYLQGRISHAAVIDPSKLSGNRVVFGARVFLKNLDTGEPIVYRLVGEDEADIEQGSIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+AR LI +E+G+ + P G K++EI+++ +
Sbjct: 121 ITSPLARGLIRREVGEQAKIAVPSGIKSFEIVKIEF 156
>gi|193213188|ref|YP_001999141.1| transcription elongation factor GreA [Chlorobaculum parvum NCIB
8327]
gi|238692652|sp|B3QPT8|GREA_CHLP8 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|193086665|gb|ACF11941.1| transcription elongation factor GreA [Chlorobaculum parvum NCIB
8327]
Length = 159
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +T G++++++EL + R +++ I+EAR++GDLSENAEY AA+E Q+ E
Sbjct: 1 MSDRIYLTRDGYNRLKEELHLLSTQTRKEVLEKIAEARSHGDLSENAEYDAAREEQSQLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119
++ +LEN + A ++D + DR+ +V L + D+ Y +V +EAD G
Sbjct: 61 AKIGDLENKLASATILDPKQIKTDRVYILTSVKLRNLDDEDEIIEYTLVSSEEADSDLGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S+ SP+ RALIGK +GD ++++ P GE YEIL +
Sbjct: 121 ISVRSPVGRALIGKSVGDKVTISVPKGELHYEILDI 156
>gi|332291987|ref|YP_004430596.1| transcription elongation factor GreA [Krokinobacter diaphorus
4H-3-7-5]
gi|332170073|gb|AEE19328.1| transcription elongation factor GreA [Krokinobacter diaphorus
4H-3-7-5]
Length = 158
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 95/156 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T +G K++ EL + ERP+ + I++AR GDLSENAEY AAKE Q + E
Sbjct: 1 MSKVNYYTPEGLKKLKDELNHLRDVERPKASQDIADARDKGDLSENAEYDAAKEAQGMLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LEN+ + A +ID S + ++ +TV + + +G Y++V EAD++ GL+
Sbjct: 61 MRIAKLENLASNARIIDESQLDTSKVLVHSTVKIKNQINGATMTYKLVAQNEADIKKGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SPI + L+GKE+G++ + P G ++++ +
Sbjct: 121 SVDSPIGKGLLGKEVGEVAEIQVPSGVMKFDVVSIS 156
>gi|207723992|ref|YP_002254390.1| transcription elongation factor grea (transcript cleavage
factorgrea) protein [Ralstonia solanacearum MolK2]
gi|207742902|ref|YP_002259294.1| transcription elongation factor grea (transcript cleavage
factorgrea) protein [Ralstonia solanacearum IPO1609]
gi|206589200|emb|CAQ36162.1| transcription elongation factor grea (transcript cleavage
factorgrea) protein [Ralstonia solanacearum MolK2]
gi|206594297|emb|CAQ61224.1| transcription elongation factor grea (transcript cleavage
factorgrea) protein [Ralstonia solanacearum IPO1609]
Length = 146
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 77/145 (53%), Positives = 107/145 (73%), Gaps = 1/145 (0%)
Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
+++EL+ + +ERP ++ AI+EARA GDLSENA+Y AAKE Q EGR+ E+E+ + A+
Sbjct: 2 LKEELQRLKTKERPAVVTAIAEARAQGDLSENADYDAAKERQGFIEGRILEIESKLAAAQ 61
Query: 75 VIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
VID +++ D RI FGAT+ L + +SG YQIVGD EAD+ +G +SISSPIARALIGK
Sbjct: 62 VIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDTGKISISSPIARALIGK 121
Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158
GD+ +V APGGE+ YE+ V ++
Sbjct: 122 YEGDVATVVAPGGEREYEVRSVKYL 146
>gi|28899240|ref|NP_798845.1| transcription elongation factor GreA [Vibrio parahaemolyticus RIMD
2210633]
gi|260362164|ref|ZP_05775154.1| transcription elongation factor GreA [Vibrio parahaemolyticus
K5030]
gi|260879066|ref|ZP_05891421.1| transcription elongation factor GreA [Vibrio parahaemolyticus
AN-5034]
gi|260900671|ref|ZP_05909066.1| transcription elongation factor GreA [Vibrio parahaemolyticus
AQ4037]
gi|31076674|sp|Q87LZ2|GREA_VIBPA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|28807464|dbj|BAC60729.1| transcription elongation factor GreA [Vibrio parahaemolyticus RIMD
2210633]
gi|308089586|gb|EFO39281.1| transcription elongation factor GreA [Vibrio parahaemolyticus
AN-5034]
gi|308110885|gb|EFO48425.1| transcription elongation factor GreA [Vibrio parahaemolyticus
AQ4037]
gi|308111060|gb|EFO48600.1| transcription elongation factor GreA [Vibrio parahaemolyticus
K5030]
Length = 157
Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 114/158 (72%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G ++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQMLRTELERLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M + ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENTGKVIFGSTVTLIDVDTDEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD +++ PGG K +EI +V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVAIQTPGGAKDFEIDRVEYI 157
>gi|330447154|ref|ZP_08310804.1| transcription elongation factor GreB [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328491345|dbj|GAA05301.1| transcription elongation factor GreB [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 160
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ VT +G++K++QEL +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MRTNLVTREGYNKLKQELDSLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +VID S ++ FGA V + + GD+K ++IVG E ++ +S
Sbjct: 61 RVRFLRKRLDVLKVIDYSPQQDGKVFFGAWVEIEN-DDGDQKTFRIVGPDEIYGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE+ D I V P G+K + I + +
Sbjct: 120 IDSPMARALLSKEVDDDIVVTTPLGKKEWFINDIRY 155
>gi|302390918|ref|YP_003826738.1| transcription elongation factor GreA [Acetohalobium arabaticum DSM
5501]
gi|302202995|gb|ADL11673.1| transcription elongation factor GreA [Acetohalobium arabaticum DSM
5501]
Length = 157
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 98/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K+ +T +G +K+++EL + + +R + K I +A +GD+SEN+EY AK Q E
Sbjct: 1 MAEKVILTKEGLNKLEEELSYLKGTKRREVAKRIKQALEFGDISENSEYDDAKNEQAFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ E+EN++ AEVI+ + + G TV++ + ++ ++ NY+IVG EAD +
Sbjct: 61 GRIKEIENMLNNAEVINEDEVETTEVNIGTTVTIRDLDTEEEYNYKIVGTTEADPFENKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ AL+G ++G+ + ++AP G+ Y+IL +
Sbjct: 121 SNDSPVGNALLGHKIGEEVEIDAPAGKIVYKILAIQ 156
>gi|312963093|ref|ZP_07777578.1| transcription elongation factor GreA [Pseudomonas fluorescens WH6]
gi|311282604|gb|EFQ61200.1| transcription elongation factor GreA [Pseudomonas fluorescens WH6]
Length = 158
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +GF +++E + RP++ + I AR GDL ENAEY AA+E Q + E
Sbjct: 1 MTKYPMTVQGFKALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + + VID++T+ ++ FG TV + + + Y IVG+ EAD + G +
Sbjct: 61 RIRDIEGRLQNSVVIDVTTIPHTGKVIFGTTVEIANVETDESVVYHIVGEDEADFKLGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SP+ARALI KE GD+++V PGG YEI++V +
Sbjct: 121 SVGSPLARALIAKEEGDVVAVKTPGGVIEYEIVEVRHV 158
>gi|118475144|ref|YP_891529.1| transcription elongation factor GreA [Campylobacter fetus subsp.
fetus 82-40]
gi|118414370|gb|ABK82790.1| transcription elongation factor GreA [Campylobacter fetus subsp.
fetus 82-40]
Length = 161
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 107/157 (68%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + P+T G++K+ EL+ + +RP I++ I AR++GDL ENAEY AA+E Q E
Sbjct: 1 MTE--PMTLYGYEKLSSELKDLKLVQRPAIVEEIDIARSHGDLKENAEYHAAREKQAFIE 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AEL +I++RA+VI+ S DR+ FG+T+++++ ++ + Y IVG E++++ GL+
Sbjct: 59 NRIAELSDILSRAKVINPSEYEHDRVKFGSTITIMDVDTELETTYTIVGISESNLERGLI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI++P+A+ LIGK GD ++++ P G EI+ V +
Sbjct: 119 SINTPLAKQLIGKSEGDNVTLSLPNGISEIEIVSVCY 155
>gi|83589023|ref|YP_429032.1| GreA/GreB family elongation factor [Moorella thermoacetica ATCC
39073]
gi|83571937|gb|ABC18489.1| GreA/GreB family elongation factor [Moorella thermoacetica ATCC
39073]
Length = 160
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T+ G K+++EL + + +R + + + +A +GD+SEN+EY+ AK Q
Sbjct: 1 MAEKETLLTANGLKKLEEELEYLKTVKRQEVAERLKQAIEFGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE + A+VI S + D ++ G+ V+L + + G++ Y+IVG EAD
Sbjct: 61 EGRILTLEKKLRNAKVIVASEVPDDVVSLGSRVTLKDLDEGEEIQYEIVGSMEADPAENR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +AL+G G+ +++ P G Y+IL +
Sbjct: 121 ISNESPVGKALLGHHTGETVTIQVPAGNLRYQILNI 156
>gi|229163328|ref|ZP_04291280.1| Transcription elongation factor greA [Bacillus cereus R309803]
gi|228620109|gb|EEK76983.1| Transcription elongation factor greA [Bacillus cereus R309803]
Length = 186
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 95/152 (62%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 10 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E GD+++Y IVG EAD G +S S
Sbjct: 70 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPGGDEESYTIVGSAEADPFEGRISNDS 129
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 130 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 161
>gi|77456995|ref|YP_346500.1| transcription elongation factor GreA [Pseudomonas fluorescens
Pf0-1]
gi|77380998|gb|ABA72511.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Pseudomonas fluorescens Pf0-1]
Length = 158
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +G +++E + RP++ + I AR GDL ENAEY AA+E Q + E
Sbjct: 1 MNKYPMTVQGSKALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G +
Sbjct: 61 RIRDIEGRLQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKLGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARALI KE GD + V PGG+ YEI++V I
Sbjct: 121 SVGSPIARALIAKEEGDTVVVKTPGGDIEYEIVEVRHI 158
>gi|255321856|ref|ZP_05363006.1| transcription elongation factor GreA [Campylobacter showae RM3277]
gi|255300960|gb|EET80227.1| transcription elongation factor GreA [Campylobacter showae RM3277]
Length = 160
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + P+T G++KI EL+ + ERP I++ I AR++GDL ENAEY AA+E Q E
Sbjct: 1 MTE--PMTLFGYEKITNELKNLKTVERPNIVEEIDIARSHGDLKENAEYHAAREKQAFIE 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AEL +II+RA+VID + D++ FG+TV +++ + +K Y +VG E++++ GL+
Sbjct: 59 SRIAELSDIISRAKVIDPAEYEHDKVKFGSTVVIMDVETELEKTYTLVGTPESNLERGLI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+A+ LIGK GD +++N P G EI+ V +
Sbjct: 119 SINSPLAKQLIGKSEGDEVALNLPNGRSDVEIVSVSY 155
>gi|188025404|ref|ZP_02958495.2| hypothetical protein PROSTU_00233 [Providencia stuartii ATCC 25827]
gi|188023657|gb|EDU61697.1| hypothetical protein PROSTU_00233 [Providencia stuartii ATCC 25827]
Length = 164
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G+D + +EL++ +EERPR+ +++SEA A GD SENAEY K+ +
Sbjct: 4 MNKSLLITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + + +++ R+ FGA V L + ++ + + +++VG E + +
Sbjct: 64 RRVRFLSKRLDQLRIVEPDPRQEGRVFFGAWVKLED-DNENIRIFRLVGADEFNPSKNWI 122
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+GK++ D I+VN PGG TY +L++ +
Sbjct: 123 SIDSPVARALVGKQVDDEITVNTPGGRVTYTVLEISY 159
>gi|317154377|ref|YP_004122425.1| transcription elongation factor GreA [Desulfovibrio aespoeensis
Aspo-2]
gi|316944628|gb|ADU63679.1| transcription elongation factor GreA [Desulfovibrio aespoeensis
Aspo-2]
Length = 164
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 107/157 (68%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+IP++ +GF+KI++EL + +RP II+AI EAR GDLSENA Y AA+E Q + E
Sbjct: 1 MDRIPISKQGFEKIKKELEELKA-QRPAIIQAIKEAREEGDLSENAGYDAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ + + + +V+D+ T+ G R FGATV + + ++ + K + ++G +AD +SG +S
Sbjct: 60 RITYINSRMPLFDVLDLDTLGGSRAIFGATVEIEDMDTEETKRFTLLGPDDADHKSGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SP+ RAL+GKE+GD V+AP G YEI+ + ++
Sbjct: 120 VLSPMGRALMGKEVGDEAIVDAPRGRIEYEIVSIQFL 156
>gi|319952614|ref|YP_004163881.1| transcription elongation factor grea [Cellulophaga algicola DSM
14237]
gi|319421274|gb|ADV48383.1| transcription elongation factor GreA [Cellulophaga algicola DSM
14237]
Length = 158
Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats.
Identities = 61/156 (39%), Positives = 97/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K T +G K++ EL + ERP+ + I+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MSNKSYYTPEGLKKLRDELNQLKDIERPKASRDIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+++LE + A +ID S + ++ +TV L +N+G + Y +V + EAD+++G +
Sbjct: 61 LRISKLEETYSNARLIDESQLDTSKVLVLSTVKLKNQNNGMEMKYTLVAESEADLKTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S++SPI + L+GK++G+ + P G EIL++
Sbjct: 121 SVNSPIGKGLLGKKVGESAEITIPNGVLKLEILEIT 156
>gi|268678843|ref|YP_003303274.1| transcription elongation factor GreA [Sulfurospirillum deleyianum
DSM 6946]
gi|268616874|gb|ACZ11239.1| transcription elongation factor GreA [Sulfurospirillum deleyianum
DSM 6946]
Length = 167
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 97/158 (61%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T G+ K+ EL ++ +RP + + AR++GDL ENAEY AAKE +
Sbjct: 1 MNTKEPMTEYGYKKLTDELSDLKKRQRPETVIELDIARSHGDLKENAEYHAAKEKLAFID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AEL ++++R++VID ST D++ FG+T++L + ++ Y IVG E++ GL+
Sbjct: 61 SRIAELSDLVSRSQVIDPSTYEHDKVRFGSTITLENLETNEEVTYSIVGSTESNPDLGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SP+++ L+G+ + + + + P G + Y IL + +
Sbjct: 121 SYHSPLSKQLMGRCVDEEVMIKLPVGTQEYAILNITYC 158
>gi|296333176|ref|ZP_06875629.1| transcription elongation factor GreA [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305675318|ref|YP_003866990.1| transcription elongation factor GreA [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296149374|gb|EFG90270.1| transcription elongation factor GreA [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305413562|gb|ADM38681.1| transcription elongation factor GreA [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 157
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + P+T +G K++QEL + + +R +++ I AR++GDLSEN+EY +AKE Q
Sbjct: 1 MAQEKVFPMTEEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ LEN+I A++I+ S + + G TV+ VE GD+++Y IVG EAD G
Sbjct: 61 VEGRVTTLENMIRNAKIIEDDGGS-NVVGLGKTVTFVELPDGDEESYTIVGSAEADPFEG 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA++L+GK++ + ++V PGGE +I+++
Sbjct: 120 KISNDSPIAKSLLGKKVDEEVTVQTPGGEMLVKIVKIS 157
>gi|283480153|emb|CAY76069.1| Transcription elongation factor greB [Erwinia pyrifoliae DSM 12163]
Length = 187
Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 29 MKTKLITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 88
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + ++D S ++ FGA V + + GD K ++IVG E ++ +S
Sbjct: 89 RVRYLTKCLEQLRIVDYSPQQDGKVFFGAWVEVEN-DDGDIKRFRIVGYDEIFGRNDYIS 147
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARAL+ KE+GD +V P GE + I + ++
Sbjct: 148 IDSPMARALLKKEVGDAATVFTPAGEALWYINDISYV 184
>gi|86131276|ref|ZP_01049875.1| transcription elongation factor GreA/GreB family protein [Dokdonia
donghaensis MED134]
gi|85818687|gb|EAQ39847.1| transcription elongation factor GreA/GreB family protein [Dokdonia
donghaensis MED134]
Length = 158
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 94/156 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T++G K++ EL + ERP+ + I++AR GDLSENAEY AAKE Q + E
Sbjct: 1 MSKVNYYTAEGLQKLKDELNHLRDVERPKASQDIADARDKGDLSENAEYDAAKEAQGMLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+++LE + A +ID S + ++ +TV + + +G Y++V EAD++ GL+
Sbjct: 61 MRISKLEELAANARIIDESQLDTSKVLVHSTVKIKNQTNGATMTYKLVAQNEADIKKGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SPI + L+GKE+GD+ + P G ++++ +
Sbjct: 121 SVDSPIGKGLLGKEVGDVAEIQVPSGIMKFDVVSIT 156
>gi|311277660|ref|YP_003939891.1| transcription elongation factor GreB [Enterobacter cloacae SCF1]
gi|308746855|gb|ADO46607.1| transcription elongation factor GreB [Enterobacter cloacae SCF1]
Length = 157
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 54/152 (35%), Positives = 92/152 (60%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYEKLKKELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V + + GD K ++IVG E Q +SI SP+
Sbjct: 66 TKCLEHLKIVDYSPQQEGKVFFGAWVEIEN-DDGDIKRFRIVGYDEIFGQKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ +V PGGE T+ + + ++
Sbjct: 125 ARALLKKEVGDLATVQTPGGEATWYVNDIEYV 156
>gi|226309768|ref|YP_002769662.1| transcription elongation factor [Brevibacillus brevis NBRC 100599]
gi|226092716|dbj|BAH41158.1| transcription elongation factor [Brevibacillus brevis NBRC 100599]
Length = 158
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T +G K++QEL + +R + I EA ++GD+SEN+EY+ AK Q
Sbjct: 1 MSEKEVILTPEGLTKLEQELEDLKTVKRKEVAARIKEAISFGDISENSEYEEAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I + ++ G+ V L + GD +Y IVG E+D +
Sbjct: 61 EGRILTLEKMLRNARIITNEDVDTGVVSVGSRVKLKDLEFGDVMDYTIVGSAESDPMNNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +AL+GK G I+ VN P G YEIL +
Sbjct: 121 ISNESPVGQALLGKAKGAIVDVNVPAGVIQYEILDI 156
>gi|309389965|gb|ADO77845.1| transcription elongation factor GreA [Halanaerobium praevalens DSM
2228]
Length = 160
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 100/156 (64%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D++ +T +GF+K++QEL + + E+R + K I AR +GD+SEN+EY AK Q E
Sbjct: 1 MADQVMLTEEGFEKLEQELEYLETEKRREVAKRIKVAREFGDISENSEYDDAKNEQAFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ E++N+++ A V+ ++ ++ G TV L + ++ ++ +Y +VG EAD + +
Sbjct: 61 GRIQEIKNMLSDAHVVKDDEVTDKKVNLGTTVMLNDLDNDEQISYTLVGSAEADPLNYKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SPI +A++G +GD + V+ PGGE YEI+ +
Sbjct: 121 SNESPIGKAILGHAIGDQVKVDTPGGEVNYEIISIK 156
>gi|78187325|ref|YP_375368.1| GreA/GreB family elongation factor [Chlorobium luteolum DSM 273]
gi|78167227|gb|ABB24325.1| GreA/GreB family elongation factor [Chlorobium luteolum DSM 273]
Length = 176
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 101/156 (64%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++ +T G++++++EL+ QE R +++ I+EAR++GDLSENAEY AA+E Q+ E
Sbjct: 18 MSERVYLTRDGYNRLKEELQVLVQETRKEVLEKIAEARSHGDLSENAEYDAAREEQSQTE 77
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS-GDKKNYQIVGDQEADVQSGL 119
R+A+LEN + A ++D + D++ +V L ++ + Y +V +EAD G
Sbjct: 78 SRIADLENKLASATILDPKQIKTDKVYILTSVELRNLDAPKEIIEYTLVSSEEADSDLGK 137
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S+ SP+ RALIGK GD +++ P GE YEIL++
Sbjct: 138 ISVRSPVGRALIGKTAGDKVTIVVPKGELHYEILKI 173
>gi|58699052|ref|ZP_00373893.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225630273|ref|YP_002727064.1| transcription elongation factor GreA [Wolbachia sp. wRi]
gi|58534429|gb|EAL58587.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225592254|gb|ACN95273.1| transcription elongation factor GreA [Wolbachia sp. wRi]
Length = 164
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 72/160 (45%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+++K P+T +GF+ +Q EL ++E+ P +I+AIS+AR GDLSENAEY AA+E E
Sbjct: 5 IINKFPMTREGFENMQAELEKLKEEK-PSVIQAISDARDQGDLSENAEYHAARERLGFIE 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV---EKNSGDKKNYQIVGDQEADVQS 117
GR+ E+E+ ++ AEVI++ +SGD + FGATV+L + N + Y++VG+ EADV
Sbjct: 64 GRIMEIESKLSHAEVIEVKNLSGDSVMFGATVTLSMLSDNNGEVEYVYKVVGEYEADVSK 123
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ +
Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPNGEKLYKIVKIEF 163
>gi|238792874|ref|ZP_04636504.1| Transcription elongation factor greB [Yersinia intermedia ATCC
29909]
gi|238727728|gb|EEQ19252.1| Transcription elongation factor greB [Yersinia intermedia ATCC
29909]
Length = 165
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + +EL + +EERP + +A+SEA A GD SENAEY K+ +
Sbjct: 1 MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +V+D ++ FGA V + +++ +++VG E D +
Sbjct: 61 RRVRFLTKRLEVLKVVDPDPRQEGKVFFGAWVRVEN-ELEEQRIFRLVGPDEFDPAKKWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D ++V P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVEDEVTVQTPNGEATYWILEIRY 156
>gi|157376534|ref|YP_001475134.1| transcription elongation factor GreA [Shewanella sediminis HAW-EB3]
gi|157318908|gb|ABV38006.1| transcription elongation factor GreA [Shewanella sediminis HAW-EB3]
Length = 153
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 67/153 (43%), Positives = 103/153 (67%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++++EL + + E+RP I +AI EAR GDL ENAEY AA+E Q L E R+ ++
Sbjct: 1 MTVVGAERLRKELDYLKFEKRPVIAQAIGEARELGDLKENAEYHAAREEQGLCEARVRDI 60
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ ++ID++ M RI FG TV+++ ++ + Y+IVG+ EAD++ L+S+SSP
Sbjct: 61 EGKLSNVQIIDVTKMPNTGRIIFGTTVTILNIDTDVEVTYRIVGEDEADIKENLISVSSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGK L D +++ PGG YEI V +I
Sbjct: 121 IARGLIGKNLDDEVNIATPGGITEYEITAVEYI 153
>gi|94498550|ref|ZP_01305105.1| GreA/GreB family elongation factor [Sphingomonas sp. SKA58]
gi|94421993|gb|EAT07039.1| GreA/GreB family elongation factor [Sphingomonas sp. SKA58]
Length = 158
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+K+P+ G+DK+ +LR + ERP I+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 VEKMPMLQMGYDKLNAQLRELKA-ERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ +LE+ ++RA+VID T+SG++I FGATV+L++++ K YQIVG EAD ++G++S
Sbjct: 63 TINDLEDKLSRAQVIDPKTLSGNKIIFGATVTLMDEDDKPVK-YQIVGQAEADAKAGMIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSP+ RALIG+E+GD + V+ P G+K Y + ++ ++
Sbjct: 122 YSSPLGRALIGREVGDEVEVSVPSGDKFYLVDKIEFL 158
>gi|229019601|ref|ZP_04176414.1| Transcription elongation factor greA [Bacillus cereus AH1273]
gi|229025839|ref|ZP_04182237.1| Transcription elongation factor greA [Bacillus cereus AH1272]
gi|229032029|ref|ZP_04188012.1| Transcription elongation factor greA [Bacillus cereus AH1271]
gi|228729274|gb|EEL80268.1| Transcription elongation factor greA [Bacillus cereus AH1271]
gi|228735450|gb|EEL86047.1| Transcription elongation factor greA [Bacillus cereus AH1272]
gi|228741681|gb|EEL91868.1| Transcription elongation factor greA [Bacillus cereus AH1273]
Length = 175
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 95/152 (62%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 24 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E GD+++Y IVG EAD G +S S
Sbjct: 84 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPGGDEESYTIVGSAEADPFEGRISNDS 143
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 144 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 175
>gi|118479541|ref|YP_896692.1| transcription elongation factor GreA [Bacillus thuringiensis str.
Al Hakam]
gi|190566829|ref|ZP_03019745.1| transcription elongation factor GreA [Bacillus anthracis
Tsiankovskii-I]
gi|196034522|ref|ZP_03101931.1| transcription elongation factor GreA [Bacillus cereus W]
gi|196039303|ref|ZP_03106609.1| transcription elongation factor GreA [Bacillus cereus NVH0597-99]
gi|196044918|ref|ZP_03112152.1| transcription elongation factor GreA [Bacillus cereus 03BB108]
gi|218905574|ref|YP_002453408.1| transcription elongation factor GreA [Bacillus cereus AH820]
gi|225866361|ref|YP_002751739.1| transcription elongation factor GreA [Bacillus cereus 03BB102]
gi|228929424|ref|ZP_04092445.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935700|ref|ZP_04098513.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228987631|ref|ZP_04147745.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229123920|ref|ZP_04253112.1| Transcription elongation factor greA [Bacillus cereus 95/8201]
gi|229157995|ref|ZP_04286066.1| Transcription elongation factor greA [Bacillus cereus ATCC 4342]
gi|229186619|ref|ZP_04313780.1| Transcription elongation factor greA [Bacillus cereus BGSC 6E1]
gi|254684135|ref|ZP_05147995.1| transcription elongation factor GreA [Bacillus anthracis str.
CNEVA-9066]
gi|254721967|ref|ZP_05183756.1| transcription elongation factor GreA [Bacillus anthracis str.
A1055]
gi|254736482|ref|ZP_05194188.1| transcription elongation factor GreA [Bacillus anthracis str.
Western North America USA6153]
gi|254741520|ref|ZP_05199207.1| transcription elongation factor GreA [Bacillus anthracis str.
Kruger B]
gi|254750958|ref|ZP_05202997.1| transcription elongation factor GreA [Bacillus anthracis str.
Vollum]
gi|254757713|ref|ZP_05209740.1| transcription elongation factor GreA [Bacillus anthracis str.
Australia 94]
gi|300119200|ref|ZP_07056897.1| transcription elongation factor GreA [Bacillus cereus SJ1]
gi|301055888|ref|YP_003794099.1| transcription elongation factor [Bacillus anthracis CI]
gi|118418766|gb|ABK87185.1| transcription elongation factor GreA [Bacillus thuringiensis str.
Al Hakam]
gi|190561820|gb|EDV15789.1| transcription elongation factor GreA [Bacillus anthracis
Tsiankovskii-I]
gi|195993064|gb|EDX57023.1| transcription elongation factor GreA [Bacillus cereus W]
gi|196024406|gb|EDX63079.1| transcription elongation factor GreA [Bacillus cereus 03BB108]
gi|196029930|gb|EDX68531.1| transcription elongation factor GreA [Bacillus cereus NVH0597-99]
gi|218538607|gb|ACK91005.1| transcription elongation factor GreA [Bacillus cereus AH820]
gi|225789601|gb|ACO29818.1| transcription elongation factor GreA [Bacillus cereus 03BB102]
gi|228596878|gb|EEK54537.1| Transcription elongation factor greA [Bacillus cereus BGSC 6E1]
gi|228625448|gb|EEK82204.1| Transcription elongation factor greA [Bacillus cereus ATCC 4342]
gi|228659222|gb|EEL14870.1| Transcription elongation factor greA [Bacillus cereus 95/8201]
gi|228772091|gb|EEM20543.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228823938|gb|EEM69757.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830212|gb|EEM75828.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|298723420|gb|EFI64165.1| transcription elongation factor GreA [Bacillus cereus SJ1]
gi|300378057|gb|ADK06961.1| transcription elongation factor [Bacillus cereus biovar anthracis
str. CI]
Length = 175
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 95/152 (62%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 24 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S
Sbjct: 84 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 143
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 144 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 175
>gi|229141116|ref|ZP_04269658.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST26]
gi|229198506|ref|ZP_04325210.1| Transcription elongation factor greA [Bacillus cereus m1293]
gi|228585009|gb|EEK43123.1| Transcription elongation factor greA [Bacillus cereus m1293]
gi|228642394|gb|EEK98683.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST26]
gi|324328283|gb|ADY23543.1| transcription elongation factor GreA [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 175
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 24 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E GD++ Y IVG EAD G +S S
Sbjct: 84 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDS 143
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 144 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 175
>gi|152992894|ref|YP_001358615.1| transcription elongation factor GreA [Sulfurovum sp. NBC37-1]
gi|166201123|sp|A6Q9U9|GREA_SULNB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|151424755|dbj|BAF72258.1| transcription elongation factor GreA [Sulfurovum sp. NBC37-1]
Length = 162
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 76/156 (48%), Positives = 110/156 (70%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+ + + K+ +EL + ER I K I EAR GDL ENAEY AAK+ Q L E
Sbjct: 1 MQKEPMLEETYRKLSEELEQLKSVERGVIAKVIDEARELGDLKENAEYHAAKDKQGLMEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL +++ RA+V+D ST S DR++FG+TV LV++++ ++ Y IVG QE++ QSGL+S
Sbjct: 61 RIAELTDVVGRAQVVDPSTFSHDRVSFGSTVVLVDQDTDEEVRYTIVGGQESNPQSGLIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+AR LIGKE GD + + P G+KTY+I ++L+
Sbjct: 121 IQSPMARVLIGKEEGDEVELTLPSGKKTYDIEEILY 156
>gi|42520503|ref|NP_966418.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|42410242|gb|AAS14352.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 164
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 72/160 (45%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+++K P+T +GF+ +Q EL ++E+ P +I+AIS+AR GDLSENAEY AA+E E
Sbjct: 5 IINKFPMTREGFENMQAELEKLKEEK-PSVIQAISDARDQGDLSENAEYHAARERLGFIE 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV---EKNSGDKKNYQIVGDQEADVQS 117
GR+ E+E+ ++ AEVI++ +SGD + FGATV+L + N + Y++VG+ EADV
Sbjct: 64 GRIMEIESKLSHAEVIEVKNLSGDSVIFGATVTLRMLSDNNGEVEYVYKVVGEYEADVSK 123
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ +
Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPNGEKLYKIVKIEF 163
>gi|305666121|ref|YP_003862408.1| transcription elongation factor greA [Maribacter sp. HTCC2170]
gi|88707555|gb|EAQ99798.1| transcription elongation factor greA [Maribacter sp. HTCC2170]
Length = 158
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 100/156 (64%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + T++G ++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MSNVSYYTAEGLKNLRDELNQLKDVERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+++LE+ + A +ID S + ++ +TV L + +G + Y +V + EAD+++G +
Sbjct: 61 LRISKLEDTVANARLIDESQLDTSKVLVLSTVKLKNQANGMEMKYTLVAESEADLKTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S++SPI + L+GKE+GD + P G+ T+EIL++
Sbjct: 121 SVNSPIGKGLLGKEVGDTAEITVPNGKITFEILEIT 156
>gi|322381160|ref|ZP_08055163.1| transcription elongation factor GreA-like protein [Paenibacillus
larvae subsp. larvae B-3650]
gi|321154736|gb|EFX47007.1| transcription elongation factor GreA-like protein [Paenibacillus
larvae subsp. larvae B-3650]
Length = 170
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T +G K++ EL + +R + + I A YGD+SEN+EY+ AK Q
Sbjct: 13 MSEKEVILTQEGLSKLENELDHLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 72
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I+ + D ++ G+TV++ + GD Y IVG E+D
Sbjct: 73 EGRIITLEKMLRNARIINSDDVDTDTVSVGSTVTMKDLEFGDTVEYTIVGTAESDPFLNK 132
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++GK+ G I+ VN P G YEI+ +
Sbjct: 133 ISNESPVGKAILGKQKGAIVDVNVPAGVIKYEIIDIK 169
>gi|148244934|ref|YP_001219628.1| transcription elongation factor GreA [Candidatus Vesicomyosocius
okutanii HA]
gi|166201193|sp|A5CVW9|GREA_VESOH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|146326761|dbj|BAF61904.1| transcription elongation factor GreA [Candidatus Vesicomyosocius
okutanii HA]
Length = 159
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ IPVT+ G ++ L + RPRII+ I ARA+GDL ENAEY AAKE Q+ EG
Sbjct: 1 MNNIPVTAFGAKALEAALLKLKDVSRPRIIEDIRIARAHGDLKENAEYHAAKEEQSFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E ++R ++ID++ +S D R FG T++L+ + YQIVG+ EAD+ +
Sbjct: 61 RIKEIELKLSRMQIIDVTKLSQDGRCVFGTTITLMNSVDNSEITYQIVGEDEADISLDKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S SPIA AL+G E GD + V AP G+ Y+IL V +
Sbjct: 121 SCHSPIASALMGNEEGDKVIVKAPKGDIVYKILSVEY 157
>gi|120437373|ref|YP_863059.1| transcription elongation factor GreA [Gramella forsetii KT0803]
gi|166200665|sp|A0M5U7|GREA_GRAFK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|117579523|emb|CAL67992.1| transcription elongation factor GreA [Gramella forsetii KT0803]
Length = 158
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 94/155 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T +G K++ EL + ERP+ +AI EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MSKVSYYTPEGLKKLRDELNHLKDVERPKASEAIGEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+++++E ++ A VID S + ++ + V + + +G + Y++V EAD++SG +
Sbjct: 61 MKISKMEEVVANARVIDESQLDTSKVLVHSHVKIKNQTNGAEMTYKLVAQSEADLKSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S+ SPI + L+GK++GD + P G ++++++
Sbjct: 121 SVDSPIGKGLLGKKVGDTAEIEVPNGTVKFDVIEI 155
>gi|293393396|ref|ZP_06637708.1| transcription elongation factor GreB [Serratia odorifera DSM 4582]
gi|291424133|gb|EFE97350.1| transcription elongation factor GreB [Serratia odorifera DSM 4582]
Length = 157
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+DK++QEL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MRTQLITREGYDKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + +++D S ++ FGA V + + GD K ++IVG E + +S
Sbjct: 61 RVRYLTKCLEQLKIVDYSPQQEGKVFFGAWVEVEN-DDGDLKRFRIVGYDEIFGRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARAL+ K++GD VN P GE + + Q+ ++
Sbjct: 120 IDSPMARALLKKQVGDTAMVNTPAGEALWYVNQIEYV 156
>gi|310765656|gb|ADP10606.1| Transcription elongation factor greB [Erwinia sp. Ejp617]
Length = 187
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 29 MKTKLITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDS 88
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + ++D S ++ FGA V + + GD K ++IVG E ++ +S
Sbjct: 89 RVRYLTKCLEQLRIVDYSPQQDGKVFFGAWVEVEN-DDGDIKRFRIVGYDEIFGRNDYIS 147
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARAL+ KE+GD +V P GE + + + ++
Sbjct: 148 IDSPMARALLKKEVGDAATVFTPAGEALWYVNDISYV 184
>gi|148553363|ref|YP_001260945.1| transcription elongation factor GreA [Sphingomonas wittichii RW1]
gi|229485908|sp|A5V3E1|GREA_SPHWW RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|148498553|gb|ABQ66807.1| transcription elongation factor GreA [Sphingomonas wittichii RW1]
Length = 158
Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats.
Identities = 73/156 (46%), Positives = 109/156 (69%), Gaps = 2/156 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K+P+ ++G + +EL + ERP II AI EARA+GDLSENAEY AAKE Q E
Sbjct: 5 EKLPMLAEGQKMLTEELARLKA-ERPLIIDAIEEARAHGDLSENAEYHAAKERQGQIEAS 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A++E+ ++RA+VID S +SGD+I FGATV+L++ + YQIVG EAD ++G +S
Sbjct: 64 IADIEDRLSRAQVIDPSMLSGDKIVFGATVTLLD-DDEKPVRYQIVGQTEADAKTGKISY 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ RALIGK++ D + V P G++ Y + ++ +I
Sbjct: 123 NSPLGRALIGKKVDDEVEVTVPSGDRFYLVSKIEFI 158
>gi|313157566|gb|EFR56982.1| transcription elongation factor GreA [Alistipes sp. HGB5]
Length = 169
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 62/154 (40%), Positives = 98/154 (63%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ I +T++G+ K++ EL + ERP I AI+EAR GDLSENAEY AA+E Q + E R
Sbjct: 15 EIIYLTAEGYKKLRDELDHMRSVERPAISAAIAEARDKGDLSENAEYDAAREAQGMLEMR 74
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A+LE+ + A VID S + ++ + V+L+ N+ + Y IV + EA+++ G ++I
Sbjct: 75 IAKLEDSLANARVIDESKIDKSKVQILSKVTLLNHNTKKEMVYTIVAEHEANLREGKLAI 134
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+PIA+AL+G + GD + V P G +EIL +
Sbjct: 135 GTPIAKALLGHKKGDRVDVEVPAGTIHFEILDIS 168
>gi|254428856|ref|ZP_05042563.1| transcription elongation factor GreA subfamily [Alcanivorax sp.
DG881]
gi|196195025|gb|EDX89984.1| transcription elongation factor GreA subfamily [Alcanivorax sp.
DG881]
Length = 153
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 70/153 (45%), Positives = 112/153 (73%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+KG +++EL ++E+RPRI AI+EAR +GDL ENAEY AA+E Q EGR+ ++
Sbjct: 1 MTAKGAKALREELEKLKKEDRPRISAAIAEAREHGDLKENAEYHAAREQQGFCEGRIGDI 60
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A++IDI T+ + ++ FG TV++++ ++ + K YQIVGD EA+++ G +S++SP
Sbjct: 61 EGKLSNAQIIDIQTIENTGKVIFGVTVTIIDVDTDETKVYQIVGDDEANIKEGKLSVNSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIG+E GD++ ++ PGG + YE+ QV I
Sbjct: 121 IARGLIGREEGDVVQIDTPGGTREYEVDQVEHI 153
>gi|157736870|ref|YP_001489553.1| transcription elongation factor GreA [Arcobacter butzleri RM4018]
gi|315636041|ref|ZP_07891300.1| transcription elongation factor GreA [Arcobacter butzleri JV22]
gi|166987609|sp|A8ESG0|GREA_ARCB4 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|157698724|gb|ABV66884.1| transcription elongation factor GreA [Arcobacter butzleri RM4018]
gi|315479697|gb|EFU70371.1| transcription elongation factor GreA [Arcobacter butzleri JV22]
Length = 161
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 66/156 (42%), Positives = 109/156 (69%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T G++K+ EL + ++ ERP + A+ EAR GDL ENAEY +AKE L +
Sbjct: 1 MEKEPMTLAGYNKVTAELDFLKKTERPETVIALDEARQLGDLKENAEYHSAKEKLKLIDI 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AEL +I++A +ID +T+ DR++FG+T+ LV+ ++ ++ Y IVG E+ + G++S
Sbjct: 61 QIAELNAVISKAVIIDPTTLPHDRVSFGSTIDLVDVDTDEEFTYTIVGGVESSAEKGMIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SP+A+ L+GKE GD ++ PGG KT+EIL+V +
Sbjct: 121 FNSPLAKQLMGKEAGDELNATLPGGAKTFEILKVYY 156
>gi|58584571|ref|YP_198144.1| transcription elongation factor, GreA [Wolbachia endosymbiont
strain TRS of Brugia malayi]
gi|58418887|gb|AAW70902.1| Transcription elongation factor, GreA [Wolbachia endosymbiont
strain TRS of Brugia malayi]
Length = 164
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 76/160 (47%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ K P+T +GF+ IQ EL ++E+ P II+AIS+AR GDLSENAEY AA+E E
Sbjct: 5 IIKKFPITREGFEHIQAELEKLKEEK-PSIIQAISDARDQGDLSENAEYHAARERLGFIE 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV---EKNSGDKKNYQIVGDQEADVQS 117
GR+ ELEN ++ AE+I++ +SGD + FGATV+L + +S + Y+IVG+ EADV
Sbjct: 64 GRIMELENKLSHAEIIEVKNLSGDSVMFGATVTLSMLNDDDSEVEYIYKIVGEYEADVSK 123
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ +
Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPSGEKLYKIVKIEF 163
>gi|301061737|ref|ZP_07202478.1| transcription elongation factor GreA [delta proteobacterium NaphS2]
gi|300444197|gb|EFK08221.1| transcription elongation factor GreA [delta proteobacterium NaphS2]
Length = 155
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 68/155 (43%), Positives = 107/155 (69%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T G +K++ EL + ++ E+P I+AI+EARA+GDLSENAEY AAKE Q L
Sbjct: 1 MEKMPITKDGLEKLKSELVYLEKTEKPNNIQAIAEARAHGDLSENAEYHAAKEKQGLIAA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ EL+N I +AE+ID++ DR+ FG TV L + + + YQ+VG E+D ++G +S
Sbjct: 61 KINELQNAIGQAEIIDVNDGPMDRVVFGRTVLLYDIQNDKEITYQLVGPYESDPENGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
I SP+ R LIG+E+GD + + P G +E+L++
Sbjct: 121 IKSPLGRGLIGREIGDEVKIKTPRGVLEFEVLEIK 155
>gi|212711646|ref|ZP_03319774.1| hypothetical protein PROVALCAL_02721 [Providencia alcalifaciens DSM
30120]
gi|212685748|gb|EEB45276.1| hypothetical protein PROVALCAL_02721 [Providencia alcalifaciens DSM
30120]
Length = 161
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G+D + +EL++ +EERP + +++SEA A GD SENAEY K+ +
Sbjct: 1 MNKSLLITREGWDALDKELKYLWKEERPLVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + + +++ R+ FGA V L + ++ + + ++IVG E D +
Sbjct: 61 RRIRFLSKRLDQLRIVEPDPRQEGRVFFGAWVKLED-DNENIRIFRIVGADEFDPAKQWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D + V PGG+ TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVEDEVVVTTPGGKITYFILEISY 156
>gi|167754137|ref|ZP_02426264.1| hypothetical protein ALIPUT_02430 [Alistipes putredinis DSM 17216]
gi|167658762|gb|EDS02892.1| hypothetical protein ALIPUT_02430 [Alistipes putredinis DSM 17216]
Length = 158
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 63/153 (41%), Positives = 99/153 (64%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ I +T++G+ K++ EL + ERP I AI+EAR GDLSENAEY AA+E Q L E R
Sbjct: 4 EIIYLTAEGYKKLKDELDHMRSVERPAISAAIAEARDKGDLSENAEYDAAREAQGLLEMR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A++E+ I A +ID S + ++ + V+L+ N+G + Y IV + EA+++ G ++I
Sbjct: 64 IAKMEDTIANARIIDESKVDKSKVQILSRVTLLNHNTGKEVIYTIVAEHEANLREGKLAI 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+PIA+AL+G + GD + V P G +EIL +
Sbjct: 124 GTPIAKALLGHKKGDRVDVTVPAGTIHFEILDI 156
>gi|54307806|ref|YP_128826.1| transcription elongation factor GreA [Photobacterium profundum SS9]
gi|46912229|emb|CAG19024.1| putative transcription elongation factor GreA [Photobacterium
profundum SS9]
Length = 166
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +++EL + RP I KAI EAR GDL ENAEY AA+E Q + E
Sbjct: 10 MEKVPMTVRGEQTLREELEILLK-RRPIISKAIGEARELGDLKENAEYHAAREEQGICEA 68
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ ++VID++ M + ++ FG TV L++ N+ D+ Y IVGD EAD++ L+
Sbjct: 69 QIRDIEYKLSVSQVIDVTKMENTGKVIFGTTVKLIDINTDDELTYCIVGDDEADIKKNLI 128
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +S++ PGG K +EI QV ++
Sbjct: 129 SVNSPIARGLIGKLEGDEVSIHTPGGVKEFEIEQVQYL 166
>gi|116491243|ref|YP_810787.1| transcription elongation factor GreA [Oenococcus oeni PSU-1]
gi|290890788|ref|ZP_06553855.1| hypothetical protein AWRIB429_1245 [Oenococcus oeni AWRIB429]
gi|122276575|sp|Q04EK0|GREA_OENOB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116091968|gb|ABJ57122.1| transcription elongation factor GreA [Oenococcus oeni PSU-1]
gi|290479560|gb|EFD88217.1| hypothetical protein AWRIB429_1245 [Oenococcus oeni AWRIB429]
Length = 162
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 3/159 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T++G K+Q EL +RP I I EAR++GDLSEN+EYQ+AK+ Q
Sbjct: 1 MAEEKTYPMTAEGLAKLQAELDDLITNKRPAITSRIQEARSFGDLSENSEYQSAKDEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ +L+ +I A+VID S+ S + + G +S E GD++ Y IVG E+D SG
Sbjct: 61 VEGRVKQLQQMIQFAQVIDASSASKNVVTLGKKISFKEVPDGDEETYTIVGSAESDPLSG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
+S SP+ +AL+ + GD + + P T EIL V
Sbjct: 121 KISNDSPMGKALLDHKTGDKVEIPLPENHSVTVEILHVS 159
>gi|295694793|ref|YP_003588031.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912]
gi|295410395|gb|ADG04887.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912]
Length = 158
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T G K+++EL + + +R + + I A +YGD+SEN+EY+ AK Q
Sbjct: 1 MSEKEVLLTPGGLQKLEEELEYLKSVKRREVAERIKTAISYGDISENSEYEDAKNEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I S + D ++ G+TVSL + G+ Y IVG E+D
Sbjct: 61 EGRIITLEKMLRNARIIKDSDVDTDVVSIGSTVSLKDLEFGEVVEYTIVGSAESDPVENR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ RAL+G+ +G++++V P G YEILQ+
Sbjct: 121 ISNESPVGRALLGRRVGEVVNVEVPDGVLQYEILQIK 157
>gi|328554350|gb|AEB24842.1| transcription elongation factor GreA [Bacillus amyloliquefaciens
TA208]
gi|328912754|gb|AEB64350.1| Transcription elongation factor greA [Bacillus amyloliquefaciens
LL3]
Length = 157
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 3/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + P+T +G K++QEL + +R +++ I AR++GDLSEN+EY +AKE Q
Sbjct: 1 MAQEKVFPMTQEGKQKLEQELEQLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ LEN+I A++I+ S + + G TVS +E G++++Y IVG EAD G
Sbjct: 61 VEGRITTLENMIRNAKIIEDDGGS-NVVGLGKTVSFIELPDGEEESYTIVGSAEADPFEG 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA++L+G+++ + ++V PGGE +I+++
Sbjct: 120 KISNDSPIAKSLLGRKVDEEVTVQTPGGEMLVKIVKIS 157
>gi|28209977|ref|NP_780921.1| transcription elongation factor GreA [Clostridium tetani E88]
gi|28202412|gb|AAO34858.1| transcription elongation factor greA [Clostridium tetani E88]
Length = 186
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 89/155 (57%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EG
Sbjct: 30 SKKYVMTYEGVKKLEEELEYLKTVKRKEITQKIKVALSFGDLSENSEYDEAKNEQAFVEG 89
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LEN++ A ++D + M D + G+ V + + D++ + IVG EAD +S
Sbjct: 90 RIIQLENMLKNATIVDENEMPADTVNVGSIVKVKDFEFNDEEEFIIVGSAEADPLENKIS 149
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +ALIGK+ G+ + V P G YEI+ V
Sbjct: 150 NESPVGKALIGKKAGEKVEVIVPDGISKYEIISVR 184
>gi|261409956|ref|YP_003246197.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10]
gi|261286419|gb|ACX68390.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10]
Length = 158
Score = 161 bits (407), Expect = 4e-38, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 93/156 (59%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++ +T +G+DK+Q+EL + +R + + I A +YGDL EN+EY +AK Q E
Sbjct: 1 MAEELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFME 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE + A ++D +S + G+ V L + G+K YQ+VG EADV + V
Sbjct: 61 TRIIILEKTLNSARIVDAKDVSSTTVNVGSNVVLNDIEFGEKLEYQVVGPAEADVSNNKV 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +AL+GK +GD + V AP G YE+L++
Sbjct: 121 SYESPLGKALMGKAVGDQVHVEAPMGIVKYELLEIK 156
>gi|332289717|ref|YP_004420569.1| transcription elongation factor GreB [Gallibacterium anatis UMN179]
gi|330432613|gb|AEC17672.1| transcription elongation factor GreB [Gallibacterium anatis UMN179]
Length = 161
Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G++ + QEL++ + ERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRAGWNTLDQELKYLWKVERPQVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D +I FGA V L E +GD K Y+IVG E D +
Sbjct: 61 RRVRFLTKRLEVLQIVDYHPRQEGKIFFGAWVEL-ETENGDLKQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK + D + V+ P G+ + + ++ +
Sbjct: 120 SIDSPVARALIGKSIDDEVKVDTPSGKIVFYVNKIWY 156
>gi|86143814|ref|ZP_01062190.1| putative transcription elongation factor [Leeuwenhoekiella
blandensis MED217]
gi|85829857|gb|EAQ48319.1| putative transcription elongation factor [Leeuwenhoekiella
blandensis MED217]
Length = 158
Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 97/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E
Sbjct: 1 MSKVSYYTAEGLKKLKDELNQLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++++E ++ A +ID S + + +TV + + +G + Y++V EAD++SG +
Sbjct: 61 MRISKMEELVANARIIDESQLDTSKALVHSTVKIKNQTNGMQMTYKLVAQSEADLKSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SPI + L+GK++G++ V P G ++IL++
Sbjct: 121 SVDSPIGKGLLGKKVGEVAEVQVPNGTMKFDILEIT 156
>gi|57242062|ref|ZP_00370002.1| transcription elongation factor Cj0287c [Campylobacter upsaliensis
RM3195]
gi|57017254|gb|EAL54035.1| transcription elongation factor Cj0287c [Campylobacter upsaliensis
RM3195]
Length = 161
Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats.
Identities = 65/156 (41%), Positives = 105/156 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K ++S GF+K+ EL+ + +RP ++ I AR++GDL ENAEY AA+E Q L E
Sbjct: 1 MEKEAMSSFGFEKLSAELKDLKDNQRPAVVVEIDVARSHGDLKENAEYHAAREKQALIES 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL I++RA+VID ++ + + FG++V +++ S + Y +VG E+D++ G +S
Sbjct: 61 RIAELGGILSRAQVIDPASYEHESVKFGSSVLIMDLESEKESKYTLVGTCESDLEKGYIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+ARA++GK+ GD V P GE +EIL V +
Sbjct: 121 IASPLARAMLGKKEGDEFKVRLPKGESEFEILSVTY 156
>gi|291534723|emb|CBL07835.1| transcription elongation factor GreA [Roseburia intestinalis M50/1]
gi|291540500|emb|CBL13611.1| transcription elongation factor GreA [Roseburia intestinalis XB6B4]
Length = 159
Score = 160 bits (406), Expect = 4e-38, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 93/155 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K +T +G K++ EL + R + + I EAR GDLSENAEY AAK+ Q E
Sbjct: 1 MDKKNILTYEGLKKLEDELENLKVVRRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE I+ AEV+ D+++ G +V +++ ++ Y+IVG EA+ G +
Sbjct: 61 ARIEELEKILKNAEVVVEEEADLDKVSIGCSVKILDCEFDEELEYKIVGSTEANSLKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+GK++GD ++V P GE +Y++L +
Sbjct: 121 SNESPVGKALLGKQVGDTVTVETPAGEFSYKVLSI 155
>gi|301050385|ref|ZP_07197272.1| transcription elongation factor GreB [Escherichia coli MS 185-1]
gi|300297895|gb|EFJ54280.1| transcription elongation factor GreB [Escherichia coli MS 185-1]
Length = 161
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + + ++
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
>gi|292489910|ref|YP_003532800.1| transcription elongation factor greB [Erwinia amylovora CFBP1430]
gi|292900946|ref|YP_003540315.1| transcription elongation factor [Erwinia amylovora ATCC 49946]
gi|291200794|emb|CBJ47928.1| transcription elongation factor [Erwinia amylovora ATCC 49946]
gi|291555347|emb|CBA23711.1| Transcription elongation factor greB [Erwinia amylovora CFBP1430]
gi|312174094|emb|CBX82347.1| Transcription elongation factor greB [Erwinia amylovora ATCC
BAA-2158]
Length = 159
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTKLITREGYNLLKQELDFLWREERPEVTKKVAWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + ++D S ++ FGA V + + GD K ++IVG E ++ +S
Sbjct: 61 RIRYLTKCLEQLRIVDYSPQQDGKVFFGAWVEVEN-DDGDIKRFRIVGYDEIFGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARAL+ KE+GD +V P GE + + + ++
Sbjct: 120 IDSPMARALLKKEVGDAATVFTPAGEALWYVNAISYV 156
>gi|320103860|ref|YP_004179451.1| transcription elongation factor GreA [Isosphaera pallida ATCC
43644]
gi|319751142|gb|ADV62902.1| transcription elongation factor GreA [Isosphaera pallida ATCC
43644]
Length = 157
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 101/154 (65%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P++ +G+DK++ +L + EE P+I + I+ AR +GDLSENAE+ AA E Q + +
Sbjct: 1 MDKVPMSKEGYDKLRAQLDHWKNEEMPKIAEQIALARGFGDLSENAEFDAAVEAQGMLQA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ +LE+ ++RA ++D + ++ DR+ FG V +++ + D++ + VG E D + +
Sbjct: 61 KINDLESKLSRAIIVDKNAVTTDRVVFGTRVKVLDLDCDDEEEFTFVGPGEEDYDNNKIL 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+SSPI + L+GK + D + VN P G + IL++
Sbjct: 121 LSSPIGQGLLGKSVNDEVCVNVPKGVLRFRILEI 154
>gi|86148136|ref|ZP_01066435.1| transcription elongation factor GreA [Vibrio sp. MED222]
gi|218710454|ref|YP_002418075.1| transcription elongation factor GreA [Vibrio splendidus LGP32]
gi|85834053|gb|EAQ52212.1| transcription elongation factor GreA [Vibrio sp. MED222]
gi|218323473|emb|CAV19650.1| transcription elongation factor GreA [Vibrio splendidus LGP32]
Length = 157
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 66/158 (41%), Positives = 108/158 (68%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +++ EL + RP I AI EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGAQQLRDELDRLLK-LRPIISAAIGEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A++ID++ M +I FG TV+L++ ++ ++ YQIV + EAD+++G +
Sbjct: 60 QIRDIEYKLSLAQIIDVTQMDNTGKIIFGTTVTLIDVDTDEEFRYQIVSEDEADIKTGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIAR LIGK GD + ++ PGG+K +EI +V +I
Sbjct: 120 SVKSPIARGLIGKMEGDEVLISTPGGDKDFEIDKVEYI 157
>gi|290473268|ref|YP_003466134.1| transcription elongation factor and transcript cleavage
[Xenorhabdus bovienii SS-2004]
gi|289172567|emb|CBJ79336.1| transcription elongation factor and transcript cleavage
[Xenorhabdus bovienii SS-2004]
Length = 160
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ + ERP + +A+S+A A GD SENAEY K+ +
Sbjct: 1 MAKSNYITREGWHALDQELKYLWKVERPNVTQAVSDAAALGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V + + + ++ +++VG E + +
Sbjct: 61 RRVRFLSKRLDALQIVDPDPRQEGKVFFGAWVKVENEKA-EEHIFRLVGPDEFEPAKKWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+GK++ D I+V P G Y IL++ +
Sbjct: 120 SIDSPVARALLGKQVDDEITVMTPNGMAIYWILEIGY 156
>gi|119478511|ref|ZP_01618473.1| Transcription elongation factor GreA [marine gamma proteobacterium
HTCC2143]
gi|119448492|gb|EAW29740.1| Transcription elongation factor GreA [marine gamma proteobacterium
HTCC2143]
Length = 153
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 68/153 (44%), Positives = 107/153 (69%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL + E+RPRI++ I++AR +GDL ENAEY AA+E Q EGR+ E+
Sbjct: 1 MTVAGEAAMRAELHRLKSEDRPRIVQDIADAREHGDLKENAEYHAAREQQGFCEGRIQEI 60
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ + VID++T+ S ++ FG TV++V + ++ Y+IVG+ EA+V +G++S++SP
Sbjct: 61 EGKLSDSIVIDVTTIPSTGKVIFGTTVAIVNCETDEEVTYKIVGEDEANVSAGMISVTSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARALIGKE+GD+ V P G+ YEI +V +
Sbjct: 121 IARALIGKEVGDVAVVKTPKGDVEYEIDEVSHL 153
>gi|168701830|ref|ZP_02734107.1| transcription elongation factor greA [Gemmata obscuriglobus UQM
2246]
Length = 161
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 95/154 (61%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D+IP+T +G+DK++ EL + E I K ++ AR GDLSENAEY AA+E Q + + R
Sbjct: 4 DRIPMTREGYDKLKVELDRLRGAEMIEITKRVAAARDLGDLSENAEYHAAREDQGILQAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + ++RA ++D S + D +AFG+ V +++ + +++ +++V + + G +
Sbjct: 64 IDALSDRLSRAVIVDTSNLPKDTVAFGSKVRVLDVDVDEEETFELVSPGQENPDKGRILT 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPI + LIG++ GD + + P G ++IL++
Sbjct: 124 GSPIGQGLIGRKKGDTVEIQVPSGTIKFKILEIS 157
>gi|118586750|ref|ZP_01544187.1| transcriptional elongation factor [Oenococcus oeni ATCC BAA-1163]
gi|118432838|gb|EAV39567.1| transcriptional elongation factor [Oenococcus oeni ATCC BAA-1163]
Length = 169
Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 95/159 (59%), Gaps = 3/159 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T++G K+Q EL +RP I I EAR++GDLSEN+EYQ+AK+ Q
Sbjct: 8 MAEEKTYPMTAEGLAKLQAELDDLITNKRPAITSRIQEARSFGDLSENSEYQSAKDEQAF 67
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ +L+ +I A+VID S+ S + + G +S E GD++ Y IVG E+D SG
Sbjct: 68 VEGRVKQLQQMIQFAQVIDASSASKNVVTLGKKISFKEVPDGDEETYTIVGSAESDPLSG 127
Query: 119 LVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
+S SP+ +AL+ + GD + + P T EIL V
Sbjct: 128 KISNDSPMGKALLDHKTGDKVEIPLPENHSVTVEILHVS 166
>gi|237728725|ref|ZP_04559206.1| transcription elongation factor GreB [Citrobacter sp. 30_2]
gi|283835801|ref|ZP_06355542.1| hypothetical protein CIT292_10195 [Citrobacter youngae ATCC 29220]
gi|226909347|gb|EEH95265.1| transcription elongation factor GreB [Citrobacter sp. 30_2]
gi|291067966|gb|EFE06075.1| transcription elongation factor GreB [Citrobacter youngae ATCC
29220]
Length = 157
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V + + GD + ++IVG E + +SI SP+
Sbjct: 66 TKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGDIRKFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ VN PGGE ++ + ++ ++
Sbjct: 125 ARALLKKEVGDLAVVNTPGGEASWYVNEIEYV 156
>gi|89110604|ref|AP_004384.1| transcription elongation factor [Escherichia coli str. K-12 substr.
W3110]
gi|90111587|ref|YP_026216.2| transcript cleavage factor [Escherichia coli str. K-12 substr.
MG1655]
gi|157162883|ref|YP_001460201.1| transcription elongation factor GreB [Escherichia coli HS]
gi|170018358|ref|YP_001723312.1| transcription elongation factor GreB [Escherichia coli ATCC 8739]
gi|170082923|ref|YP_001732243.1| transcription elongation factor [Escherichia coli str. K-12 substr.
DH10B]
gi|188492838|ref|ZP_03000108.1| transcription elongation factor GreB [Escherichia coli 53638]
gi|193068770|ref|ZP_03049730.1| transcription elongation factor GreB [Escherichia coli E110019]
gi|194431145|ref|ZP_03063438.1| transcription elongation factor GreB [Shigella dysenteriae 1012]
gi|194435634|ref|ZP_03067737.1| transcription elongation factor GreB [Escherichia coli 101-1]
gi|209920862|ref|YP_002294946.1| transcription elongation factor GreB [Escherichia coli SE11]
gi|218555955|ref|YP_002388868.1| transcription elongation factor GreB [Escherichia coli IAI1]
gi|238902497|ref|YP_002928293.1| transcription elongation factor [Escherichia coli BW2952]
gi|253771765|ref|YP_003034596.1| transcription elongation factor GreB [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|256020750|ref|ZP_05434615.1| transcription elongation factor GreB [Shigella sp. D9]
gi|256025866|ref|ZP_05439731.1| transcription elongation factor GreB [Escherichia sp. 4_1_40B]
gi|301023124|ref|ZP_07186930.1| transcription elongation factor GreB [Escherichia coli MS 196-1]
gi|312972330|ref|ZP_07786504.1| transcription elongation factor GreB [Escherichia coli 1827-70]
gi|544419|sp|P30128|GREB_ECOLI RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|1763682|gb|AAB39763.1| GreB [Escherichia coli]
gi|85676635|dbj|BAE77885.1| transcription elongation factor [Escherichia coli str. K12 substr.
W3110]
gi|87082261|gb|AAC76431.2| transcript cleavage factor [Escherichia coli str. K-12 substr.
MG1655]
gi|157068563|gb|ABV07818.1| transcription elongation factor GreB [Escherichia coli HS]
gi|169753286|gb|ACA75985.1| transcription elongation factor GreB [Escherichia coli ATCC 8739]
gi|169890758|gb|ACB04465.1| transcription elongation factor [Escherichia coli str. K-12 substr.
DH10B]
gi|188488037|gb|EDU63140.1| transcription elongation factor GreB [Escherichia coli 53638]
gi|192957846|gb|EDV88289.1| transcription elongation factor GreB [Escherichia coli E110019]
gi|194420600|gb|EDX36676.1| transcription elongation factor GreB [Shigella dysenteriae 1012]
gi|194425177|gb|EDX41161.1| transcription elongation factor GreB [Escherichia coli 101-1]
gi|209914121|dbj|BAG79195.1| transcription elongation factor GreB [Escherichia coli SE11]
gi|218362723|emb|CAR00349.1| transcription elongation factor [Escherichia coli IAI1]
gi|238863678|gb|ACR65676.1| transcription elongation factor [Escherichia coli BW2952]
gi|253322809|gb|ACT27411.1| transcription elongation factor GreB [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260447575|gb|ACX37997.1| transcription elongation factor GreB [Escherichia coli DH1]
gi|299880978|gb|EFI89189.1| transcription elongation factor GreB [Escherichia coli MS 196-1]
gi|309703817|emb|CBJ03158.1| transcription elongation factor [Escherichia coli ETEC H10407]
gi|310334707|gb|EFQ00912.1| transcription elongation factor GreB [Escherichia coli 1827-70]
gi|315137982|dbj|BAJ45141.1| transcription elongation factor greB [Escherichia coli DH1]
gi|315614674|gb|EFU95314.1| transcription elongation factor GreB [Escherichia coli 3431]
gi|320181896|gb|EFW56802.1| Transcription elongation factor GreB [Shigella boydii ATCC 9905]
gi|320199576|gb|EFW74166.1| Transcription elongation factor GreB [Escherichia coli EC4100B]
gi|323934604|gb|EGB31004.1| transcription elongation protein GreB [Escherichia coli E1520]
gi|323939374|gb|EGB35585.1| transcription elongation proteinGreB [Escherichia coli E482]
gi|323959594|gb|EGB55246.1| transcription elongation proteinGreB [Escherichia coli H489]
gi|323970004|gb|EGB65279.1| transcription elongation proteinGreB [Escherichia coli TA007]
gi|324116399|gb|EGC10318.1| transcription elongation proteinGreB [Escherichia coli E1167]
gi|332085554|gb|EGI90720.1| transcription elongation factor GreB [Shigella boydii 5216-82]
gi|332085689|gb|EGI90853.1| transcription elongation factor GreB [Shigella dysenteriae 155-74]
gi|332345358|gb|AEE58692.1| transcription elongation factor GreB [Escherichia coli UMNK88]
Length = 158
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + + ++
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
>gi|317131159|ref|YP_004090473.1| transcription elongation factor GreA [Ethanoligenens harbinense
YUAN-3]
gi|315469138|gb|ADU25742.1| transcription elongation factor GreA [Ethanoligenens harbinense
YUAN-3]
Length = 157
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 86/156 (55%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T G K++QEL + E+R I + I A ++GDLSEN+EY AK Q + E
Sbjct: 1 MAKQYVLTDAGLKKLEQELEQLKTEKRKEIAEKIKVALSFGDLSENSEYDEAKNEQAMVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A +E ++ ++ID + + + G+ V + + + YQIVG EAD L+
Sbjct: 61 SRIATIEAMLKNVKLIDDDQLDTEAVNLGSKVQVFDVEFDETVEYQIVGSTEADPDQNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ RAL+G ++GD + P G +++L +
Sbjct: 121 SDESPVGRALLGHKVGDEVEAETPAGVLKFKVLNIT 156
>gi|283787960|ref|YP_003367825.1| transcription elongation factor [Citrobacter rodentium ICC168]
gi|282951414|emb|CBG91113.1| transcription elongation factor [Citrobacter rodentium ICC168]
Length = 157
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V + + GD + ++IVG E + +SI SP+
Sbjct: 66 TKCMEHLKIVDYSPQQEGKVFFGAWVEIEN-DDGDTRRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ VN P GE ++ + + ++
Sbjct: 125 ARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
>gi|298206886|ref|YP_003715065.1| putative transcription elongation factor [Croceibacter atlanticus
HTCC2559]
gi|83849520|gb|EAP87388.1| putative transcription elongation factor [Croceibacter atlanticus
HTCC2559]
Length = 158
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 97/155 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T +G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E
Sbjct: 1 MSKVNYYTEEGLKKLRDELDLLRDVERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++++LE +++ A VID S + ++ ++V + + +G + Y++V E+D++SG +
Sbjct: 61 MKISKLEGVLSNARVIDDSQLDTSKVLIHSSVKIKHQGNGAEMTYKLVAQSESDLKSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S+ SPI + L+GK+ GD+ V P G +++++V
Sbjct: 121 SVDSPIGKGLLGKQEGDVAEVTTPNGTIKFDVIKV 155
>gi|253681347|ref|ZP_04862145.1| transcription elongation factor GreA [Clostridium botulinum D str.
1873]
gi|253562585|gb|EES92036.1| transcription elongation factor GreA [Clostridium botulinum D str.
1873]
Length = 159
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 93/155 (60%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T++G K++ EL + + +R I + I A +YGDLSEN+EY AK Q EG
Sbjct: 4 SKQYIMTAEGVKKLEDELEYLKTTKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ++EN++ A V+D S + D ++ G+ V + + + ++ ++ IVG EAD +S
Sbjct: 64 RIVQIENMLRNANVVDESEIPKDVVSVGSIVKVKDYDFDEEIDFHIVGSAEADPMENKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ALIGK++GDI+ V P G +EIL++
Sbjct: 124 NESPVGSALIGKKVGDIVDVPVPDGISKFEILEIR 158
>gi|118444643|ref|YP_877135.1| transcription elongation factor GreA [Clostridium novyi NT]
gi|166200657|sp|A0PXN3|GREA_CLONN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|118135099|gb|ABK62143.1| transcription elongation factor greA [Clostridium novyi NT]
Length = 159
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 95/155 (61%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T++G K+++EL + + +R I + I A +YGDLSEN+EY AK Q EG
Sbjct: 4 SKQYIMTAEGVKKLEEELEYLKTVKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LEN++ A V+D S +S D ++ G+ V + + + + ++ IVG EAD +S
Sbjct: 64 RIVQLENMLRNANVVDESEISLDAVSVGSIVKVKDYDFDEIIDFHIVGSAEADPMENKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ALIGK++GD+I+V P G +EIL++
Sbjct: 124 NESPVGSALIGKKVGDVINVPVPDGISKFEILEIR 158
>gi|116492493|ref|YP_804228.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC
25745]
gi|116102643|gb|ABJ67786.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC
25745]
Length = 160
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 103/158 (65%), Gaps = 2/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M D+ P+T G K+++EL + + RP++I+ I AR++GDLSEN+EY++AK+ Q++
Sbjct: 1 MADEKTYPMTLDGKAKLEEELETLKTKTRPQVIERIKIARSFGDLSENSEYESAKDEQSM 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ +E+++ A++ID ++GD ++ G V E + + Y IVG EAD +G
Sbjct: 61 VESRINTVEHMLHYAQIIDNDDIAGDEVSLGRVVEFKELPDEEPEEYTIVGAAEADPMTG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK++GD +S+ PGG+ +IL V
Sbjct: 121 KISNDSPIAKALLGKKVGDEVSIATPGGDMKVKILTVK 158
>gi|311695967|gb|ADP98840.1| protein containing prokaryotic transcription elongation factor GreA
domain [marine bacterium HP15]
Length = 153
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 70/153 (45%), Positives = 112/153 (73%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++++EL+ + E+RPR+I AI++AR +GDL ENAEY AA+E Q+ EGR+ E+
Sbjct: 1 MTKAGETRLREELQKLKSEDRPRVIAAIADAREHGDLKENAEYHAAREQQSFIEGRIQEI 60
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A+VID++T+ + ++ FG TV L+ ++ ++ Y+IVG+ EAD+++G +SISSP
Sbjct: 61 EGKLSAAQVIDVTTIENTGKVIFGTTVHLLNMDTDEQVIYKIVGEDEADIKAGKLSISSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARAL+GK GD++++ P G YEI QV +I
Sbjct: 121 IARALVGKSEGDVVAIRVPSGTVEYEIEQVEYI 153
>gi|30022455|ref|NP_834086.1| transcription elongation factor GreA [Bacillus cereus ATCC 14579]
gi|296504870|ref|YP_003666570.1| transcription elongation factor GreA [Bacillus thuringiensis
BMB171]
gi|38372300|sp|Q817Z6|GREA_BACCR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|29898013|gb|AAP11287.1| Transcription elongation factor greA [Bacillus cereus ATCC 14579]
gi|296325922|gb|ADH08850.1| transcription elongation factor GreA [Bacillus thuringiensis
BMB171]
gi|326942161|gb|AEA18057.1| transcription elongation factor GreA [Bacillus thuringiensis
serovar chinensis CT-43]
Length = 158
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 7 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S
Sbjct: 67 QLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 127 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 158
>gi|163753412|ref|ZP_02160536.1| transcription elongation factor [Kordia algicida OT-1]
gi|161327144|gb|EDP98469.1| transcription elongation factor [Kordia algicida OT-1]
Length = 158
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 96/156 (61%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T++G K++ EL + ER + +AI+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MSKVSYYTAEGLKKLRDELDHLKNVERLKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++++E +++ A +ID S + ++ +TV + +G + Y +V + EAD+ +G +
Sbjct: 61 MRISKMEAVLSTARIIDESQLDTSKVLVLSTVRIKNTTNGMEMTYTLVAESEADLAAGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S++SPI + L+GK +G+I V P G +E+L++
Sbjct: 121 SVTSPIGKGLLGKSVGEIAEVKVPNGIMKFEVLEIT 156
>gi|313471842|ref|ZP_07812334.1| transcription elongation factor GreA [Lactobacillus jensenii 1153]
gi|313449010|gb|EEQ68245.2| transcription elongation factor GreA [Lactobacillus jensenii 1153]
Length = 151
Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats.
Identities = 62/150 (41%), Positives = 96/150 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G +K++ EL+ + +RP +I+ I AR+YGDLSEN+EY AAK+ Q+ E R+A++
Sbjct: 1 MTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAVEQRIAQV 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A+VID ++ + ++ G TV+ E D + Y IVG E+D +G +S SPI
Sbjct: 61 EQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGKISNDSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
A+AL+GK GD +S+N PGG I V
Sbjct: 121 AQALLGKHKGDTVSINTPGGSFDVVINDVK 150
>gi|194017086|ref|ZP_03055698.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M) [Bacillus
pumilus ATCC 7061]
gi|194010954|gb|EDW20524.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M) [Bacillus
pumilus ATCC 7061]
Length = 157
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 102/158 (64%), Gaps = 3/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + P+T +G K+++EL + +R +++ I AR++GDLSEN+EY +AKE Q
Sbjct: 1 MAQEKVFPMTEEGKRKLEEELEHLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ L+N+I A++I+ + + ++ G TV+ VE G++++Y IVG EAD G
Sbjct: 61 VEGRITTLDNMIRNAKIIE-DEGNSNIVSLGKTVTFVELPDGEEESYTIVGSAEADPFEG 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA++L+GK++ D ++V PGGE +I+++
Sbjct: 120 KISNDSPIAKSLLGKQVDDKVTVQTPGGEMFVQIVKIS 157
>gi|317120993|ref|YP_004100996.1| transcription elongation factor GreA [Thermaerobacter marianensis
DSM 12885]
gi|315590973|gb|ADU50269.1| transcription elongation factor GreA [Thermaerobacter marianensis
DSM 12885]
Length = 159
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 98/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ ++++G K+++EL++ + +R + + I +AR +GD+SEN+EY+ AK Q E
Sbjct: 1 MDKELLLSAEGLRKLEEELQYLKSVKRREVAQRIKQAREFGDISENSEYEEAKNEQAFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE ++ A +++ + ++ G+TV L + ++G++ Y IVG EAD + +
Sbjct: 61 GRIIELEKMLRNARIVNDEEIDPTKVNIGSTVHLKDVDTGEEVQYTIVGSNEADPAALRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +AL G+ +G+++ V P G YEI+++
Sbjct: 121 SYQSPVGKALFGRSVGEVVEVKVPAGTLRYEIVRIE 156
>gi|260061565|ref|YP_003194645.1| transcription elongation factor GreA [Robiginitalea biformata
HTCC2501]
gi|88785697|gb|EAR16866.1| putative transcription elongation factor [Robiginitalea biformata
HTCC2501]
Length = 157
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 98/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T +G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MSKVSYYTPEGMKKLKDELNHLRDVERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE ++ A +ID S + ++ +TV L + +G + +Y +V + EAD+++G +
Sbjct: 61 MKIAKLEEVVANARLIDESQLDTSKVLVLSTVKLRNQQNGQELSYTLVAESEADLKAGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S++SPI + L+GK++GD + P G +++L++
Sbjct: 121 SVTSPIGKGLLGKKVGDTAEIQVPNGTLKFDVLEIT 156
>gi|157372858|ref|YP_001480847.1| transcription elongation factor GreB [Serratia proteamaculans 568]
gi|157324622|gb|ABV43719.1| transcription elongation factor GreB [Serratia proteamaculans 568]
Length = 157
Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+DK++QEL + +E+RP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MRTPLITREGYDKLKQELDYLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + +V+D S ++ FGA +VE G+ K ++IVG E + +S
Sbjct: 61 RVRYLTKCLEQLKVVDHSPQQEGKVFFGAW-VVVENEDGEIKRFRIVGYDEIFGRRDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARAL+ KE+GD +VN P G+ + + ++ ++
Sbjct: 120 IDSPMARALLKKEVGDSATVNTPAGDALWYVNEIEYV 156
>gi|187730872|ref|YP_001882083.1| transcription elongation factor GreB [Shigella boydii CDC 3083-94]
gi|187427864|gb|ACD07138.1| transcription elongation factor GreB [Shigella boydii CDC 3083-94]
Length = 158
Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + + ++
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNSIEYV 156
>gi|222056183|ref|YP_002538545.1| transcription elongation factor GreB [Geobacter sp. FRC-32]
gi|221565472|gb|ACM21444.1| transcription elongation factor GreB [Geobacter sp. FRC-32]
Length = 161
Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G ++++E + + ERPR+ +A+S+A A GD SENAEY K+ +
Sbjct: 1 MSNSNYITPEGARRLREEFEYLWKVERPRVTQAVSDAAAEGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V++ +I FGA V L + G++ Y+IVG E D G +
Sbjct: 61 RRVRFLMKRLDVLTVVEDQPERKGKIFFGAWVRLENEE-GNEVVYRIVGPDEFDPGKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+ SP+A+ALIGK+ GD + V P G T+ I+ V +
Sbjct: 120 SVDSPMAKALIGKQEGDEVVVRRPAGVATFTIIDVGY 156
>gi|296272431|ref|YP_003655062.1| GreA/GreB family elongation factor [Arcobacter nitrofigilis DSM
7299]
gi|296096605|gb|ADG92555.1| GreA/GreB family elongation factor [Arcobacter nitrofigilis DSM
7299]
Length = 161
Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 107/156 (68%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T+ G+ KI EL + + ERP + A+ EAR GDL ENAEY AAKE L +
Sbjct: 1 MEKEPMTNVGYKKITGELDFLKSHERPETVIALEEARQLGDLKENAEYHAAKEKLKLIDV 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AEL ++++A +ID S++ DR++FG+TV LV ++ ++ Y IVG E++ + G++S
Sbjct: 61 QIAELGAVLSKAVIIDPSSLPHDRVSFGSTVKLVNTDTDEEYEYSIVGGVESNAEKGMIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SP+A+ L+GKE GD S PGG KT+E+L+V +
Sbjct: 121 FNSPLAKQLMGKEEGDEFSATLPGGVKTFEVLEVFY 156
>gi|99034137|ref|ZP_01314235.1| hypothetical protein Wendoof_01000975 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
Length = 164
Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats.
Identities = 73/160 (45%), Positives = 112/160 (70%), Gaps = 4/160 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+++K P+T +GF+ IQ EL ++E+ P +I+AIS+AR GDLSENAEY AA+E E
Sbjct: 5 IINKFPMTREGFEDIQAELEKLKEEK-PSVIQAISDARDQGDLSENAEYHAARERLGFIE 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV---EKNSGDKKNYQIVGDQEADVQS 117
GR+ E+E+ ++ AEVI++ +SGD + FGATV+L + N + Y++VG+ EADV
Sbjct: 64 GRIMEIESKLSHAEVIEVKNLSGDSVIFGATVTLRMLSDNNGEVEYVYKVVGEYEADVSK 123
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
L+S SSP+ ALIGK++G+ + V P GEK Y+I+++ +
Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPNGEKLYKIVKIEF 163
>gi|301165527|emb|CBW25098.1| transcription elongation factor greA [Bacteriovorax marinus SJ]
Length = 158
Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 105/158 (66%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ P+T +G+DK+Q EL + ER + I+EAR GDL ENAEY +AKE Q++ E
Sbjct: 1 MSNETPITKEGYDKVQAELDHLIKVEREELKTTIAEARELGDLKENAEYHSAKEKQSVVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ +L+ +I A+VID T+S D+I FGATV+L+ + Y+IVG+ E++++ G +
Sbjct: 61 GRIMQLQGVIANAQVIDPKTVSTDKIVFGATVTLLNVEEDETVVYKIVGEIESNMKEGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SP+ +A+IGKE GD + V AP G+ YE+ +I
Sbjct: 121 SYKSPLGKAVIGKEEGDTVIVKAPKGDIEYEVESFEYI 158
>gi|206969603|ref|ZP_03230557.1| transcription elongation factor GreA [Bacillus cereus AH1134]
gi|206735291|gb|EDZ52459.1| transcription elongation factor GreA [Bacillus cereus AH1134]
Length = 158
Score = 159 bits (404), Expect = 7e-38, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 7 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S
Sbjct: 67 QLENMIRNAVIIKDTGEISTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 127 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 158
>gi|110807238|ref|YP_690758.1| transcription elongation factor GreB [Shigella flexneri 5 str.
8401]
gi|161485871|ref|NP_709179.2| transcription elongation factor GreB [Shigella flexneri 2a str.
301]
gi|161486379|ref|NP_839482.2| transcription elongation factor GreB [Shigella flexneri 2a str.
2457T]
gi|110616786|gb|ABF05453.1| Transcription elongation factor [Shigella flexneri 5 str. 8401]
gi|281602756|gb|ADA75740.1| Transcription elongation factor and transcript cleavage factor
[Shigella flexneri 2002017]
gi|313647298|gb|EFS11750.1| transcription elongation factor GreB [Shigella flexneri 2a str.
2457T]
gi|332749495|gb|EGJ79912.1| transcription elongation factor GreB [Shigella flexneri K-671]
gi|332750345|gb|EGJ80756.1| transcription elongation factor GreB [Shigella flexneri 4343-70]
gi|332751378|gb|EGJ81781.1| transcription elongation factor GreB [Shigella flexneri 2747-71]
gi|332763611|gb|EGJ93850.1| transcription elongation factor GreB [Shigella flexneri 2930-71]
gi|332996406|gb|EGK16033.1| transcription elongation factor GreB [Shigella flexneri VA-6]
gi|332996647|gb|EGK16272.1| transcription elongation factor GreB [Shigella flexneri K-272]
gi|332997483|gb|EGK17099.1| transcription elongation factor GreB [Shigella flexneri K-218]
gi|333012511|gb|EGK31892.1| transcription elongation factor GreB [Shigella flexneri K-304]
gi|333013054|gb|EGK32430.1| transcription elongation factor GreB [Shigella flexneri K-227]
Length = 158
Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE + + + ++
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEANWYVNAIEYV 156
>gi|91776106|ref|YP_545862.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
gi|91710093|gb|ABE50021.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
Length = 165
Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 2/159 (1%)
Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M D K +T +G+ +++ E + ERP+++ ++ A + GD SEN +Y K+
Sbjct: 1 MADQKNYITPEGYARLKDEFEQLYKVERPKVVSDVAWAASNGDRSENGDYIYGKKRLRQI 60
Query: 60 EGRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
+ R+ L + A V+D + ++I FGA V L + + +Y+IVG E D G
Sbjct: 61 DSRLRFLMKRMDIAVVVDPAQQQDLEKIYFGAWVELYSIDKDSEHHYRIVGQDELDPGKG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S SP+ARAL+GK+ GD+I V P GE+ +EI+ V +
Sbjct: 121 YISWISPLARALLGKQPGDVIRVETPAGEERFEIVDVSY 159
>gi|26991405|ref|NP_746830.1| transcription elongation factor GreA [Pseudomonas putida KT2440]
gi|148549790|ref|YP_001269892.1| transcription elongation factor GreA [Pseudomonas putida F1]
gi|167035714|ref|YP_001670945.1| transcription elongation factor GreA [Pseudomonas putida GB-1]
gi|37999617|sp|Q88DU7|GREA_PSEPK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|24986475|gb|AAN70294.1|AE016670_4 transcription elongation factor GreA [Pseudomonas putida KT2440]
gi|148513848|gb|ABQ80708.1| transcription elongation factor GreA [Pseudomonas putida F1]
gi|166862202|gb|ABZ00610.1| transcription elongation factor GreA [Pseudomonas putida GB-1]
gi|313500631|gb|ADR61997.1| GreA [Pseudomonas putida BIRD-1]
Length = 160
Score = 159 bits (404), Expect = 8e-38, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E R+
Sbjct: 5 KYPMTVQGARALEEEHLFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARI 64
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + + VID++T+ ++ FG TV L + ++ YQIVG+ EADV+ G +S
Sbjct: 65 RDIEGRLQNSVVIDVTTIPHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKQGKLSS 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+PIARA+IGKE GD + V P G YEI++V I
Sbjct: 125 GAPIARAIIGKEEGDTVVVKTPSGTVEYEIVEVKHI 160
>gi|300726104|ref|ZP_07059561.1| transcription elongation factor GreA [Prevotella bryantii B14]
gi|299776574|gb|EFI73127.1| transcription elongation factor GreA [Prevotella bryantii B14]
Length = 154
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 60/151 (39%), Positives = 87/151 (57%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ EL+ + E PR+ +AISEAR GDLSEN EY AAK Q GR+
Sbjct: 3 YMSQEGYDKLVAELQHLTKVELPRVTEAISEARDKGDLSENFEYHAAKREQGRLLGRIRF 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+N++ A VID S +S D + + V L + NY IV EA ++ G +SI SP
Sbjct: 63 KQNVLAHARVIDSSRLSADNVQLLSKVKLTNTGNNASMNYTIVSPHEASLKEGKISIKSP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+AL+ K++GD++ V P G I +
Sbjct: 123 IAQALLNKKVGDVVEVRVPAGLLKLRIDNIE 153
>gi|116749520|ref|YP_846207.1| transcription elongation factor GreA [Syntrophobacter fumaroxidans
MPOB]
gi|229485909|sp|A0LK20|GREA_SYNFM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116698584|gb|ABK17772.1| transcription elongation factor GreA [Syntrophobacter fumaroxidans
MPOB]
Length = 156
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 67/155 (43%), Positives = 109/155 (70%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ ++P+T +GF++++ EL+ Q++ERP +I+AI EAR++GD+SENAEY+AAKE Q + EG
Sbjct: 1 MPRVPITKEGFERLKIELQRLQRDERPMVIRAIEEARSHGDISENAEYEAAKEKQAMIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L + E+++ S R FG+TV + + +G+ +Y++VG EADVQSG +S
Sbjct: 61 RIQDLCQKMGECEIVEPSDNDNGRAIFGSTVVVEDTETGEVTSYRLVGPYEADVQSGTIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ SP+ +ALIGKE G+ I V P G + E+L++
Sbjct: 121 VVSPLGKALIGKEEGEEIRVQTPKGVRNIEVLEIR 155
>gi|313681806|ref|YP_004059544.1| transcription elongation factor grea [Sulfuricurvum kujiense DSM
16994]
gi|313154666|gb|ADR33344.1| transcription elongation factor GreA [Sulfuricurvum kujiense DSM
16994]
Length = 176
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 104/157 (66%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M P++ +G+D++ +E ++ + E+PR+ + A GD SENAEY AAKE +
Sbjct: 1 MSQNEPMSPRGYDELLREFKYLKDIEKPRVNQEKQRAAELGDRSENAEYHAAKEKLRHID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L ++I +A++ID S ++ R FGAT+++ + NS ++ +Y I G E++ ++GL+
Sbjct: 61 KRLFYLNSMIEKAQIIDPSVLNHSRAHFGATITIADINSDEEFSYTICGTLESEPENGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+ SP+A+A++GKE GD SV+ PGG+K+YE+ + +
Sbjct: 121 SVHSPLAKAMLGKEEGDEFSVHLPGGKKSYEVSAITY 157
>gi|150014996|ref|YP_001307250.1| transcription elongation factor GreA [Clostridium beijerinckii
NCIMB 8052]
gi|229485763|sp|A6LPL4|GREA_CLOB8 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|149901461|gb|ABR32294.1| transcription elongation factor GreA [Clostridium beijerinckii
NCIMB 8052]
Length = 160
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 89/155 (57%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EG
Sbjct: 4 SKQYVMTYEGVKKLESELEYLKTVKRKEITEKIKIALGYGDLSENSEYDEAKNDQAFTEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LEN++ A V+D S + D ++ G+ V + + ++ Y IVG EAD + +S
Sbjct: 64 RIIQLENMLKNAVVVDESEIPSDIVSVGSKVKVKDYEFDEEVEYSIVGSAEADPMNFKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ AL+GK++GD++ V P G +EIL +
Sbjct: 124 NESPVGNALVGKKVGDVVEVTVPDGVNKFEILGIS 158
>gi|228954664|ref|ZP_04116687.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228981071|ref|ZP_04141372.1| Transcription elongation factor greA [Bacillus thuringiensis Bt407]
gi|228778612|gb|EEM26878.1| Transcription elongation factor greA [Bacillus thuringiensis Bt407]
gi|228804991|gb|EEM51587.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 161
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 10 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S
Sbjct: 70 QLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 129
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 130 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 161
>gi|114331547|ref|YP_747769.1| transcription elongation factor GreB [Nitrosomonas eutropha C91]
gi|114308561|gb|ABI59804.1| transcription elongation factor GreB [Nitrosomonas eutropha C91]
Length = 182
Score = 159 bits (404), Expect = 9e-38, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ E + ERP ++K +S A + GD SEN +Y K + R+
Sbjct: 26 KNYITPGGYQRLKDEFDQLWKVERPELVKIVSWAASNGDRSENGDYIYGKRRLREIDRRL 85
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AE+ID + D++ FGATV++ + G ++ Y IVG EA+ G +S
Sbjct: 86 RFLSRRMDHAEIIDPAQRGECDQVFFGATVTVYDAQ-GKEQTYSIVGMDEAEPSCGRISW 144
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ GD++S+ PGG + E++++ +
Sbjct: 145 ISPLARALLKAREGDVVSLQTPGGLEELEVIKIRY 179
>gi|169632632|ref|YP_001706368.1| transcription elongation factor GreA [Acinetobacter baumannii SDF]
gi|238688251|sp|B0VSL8|GREA_ACIBS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|169151424|emb|CAP00158.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Acinetobacter baumannii]
Length = 158
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 59/146 (40%), Positives = 95/146 (65%), Gaps = 1/146 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + P+T +G +++EL+ + ERPRI +AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQRYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A+VI + + R+ FG TV++ ++ ++ Y+IVGD EAD + +
Sbjct: 61 RIQDIEGKLGTAQVIAVKDLEQNGRVVFGVTVTIENLDTEERNTYKIVGDDEADFKINKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S++SPIA L+GK+ GD + + P G
Sbjct: 121 SVNSPIALGLLGKKEGDEVKITTPQG 146
>gi|255527650|ref|ZP_05394510.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
gi|296186915|ref|ZP_06855316.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
gi|255508663|gb|EET85043.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
gi|296048629|gb|EFG88062.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
Length = 160
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 91/154 (59%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K +T +G K++ EL + + +R I + I A ++GDLSEN+EY AK Q EGR
Sbjct: 6 KKYIMTYEGVKKLESELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEGR 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +LEN++ A ++D S + D ++ G+ V + + + ++ Y IVG EAD + +S
Sbjct: 66 IIQLENMLKNATIVDESEIPLDVVSVGSIVKVKDYDFDEEVEYNIVGSAEADPMNNKISN 125
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ R L+GK++GDII V P G YEIL +
Sbjct: 126 ESPVGRGLVGKKIGDIIEVQVPDGVSKYEILGIR 159
>gi|288572943|ref|ZP_06391300.1| transcription elongation factor GreA [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288568684|gb|EFC90241.1| transcription elongation factor GreA [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 164
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 6/162 (3%)
Query: 1 MVDK------IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKE 54
M DK I +T +G+D++ +EL+ + EER + + I EAR++GDLSENAEY AAK+
Sbjct: 1 MSDKTAVSDGIEMTKEGYDRLYEELKRLRSEERYVVAQRIEEARSFGDLSENAEYAAAKD 60
Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
Q E R+ LE +++A+VID S++ G +A G TV + + + +Y IVG +EAD
Sbjct: 61 EQAKLESRIQRLEYQLSKAKVIDSSSLDGSHVALGTTVKIEDIGNKKTFDYSIVGSEEAD 120
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +S SP+ +AL+GK GD ISV P G + IL++
Sbjct: 121 PKKSKISSMSPVGQALMGKHPGDEISVKVPNGMRKLRILEIR 162
>gi|163857070|ref|YP_001631368.1| transcription elongation factor GreB [Bordetella petrii DSM 12804]
gi|163260798|emb|CAP43100.1| greB [Bordetella petrii]
Length = 185
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + RM
Sbjct: 30 YMTPAGYARLRDELAHLMNVERPAVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRF 89
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + AEV+D + D++ FGATV+ ++K GD IVG EA+ +G +S S
Sbjct: 90 LTKRLDIAEVVDPAAQPNRDQVFFGATVTYLDKG-GDTHEVTIVGVDEAEPLAGKISWIS 148
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARALI GD + + PGG + +IL+V +
Sbjct: 149 PVARALIKAREGDTVVLRTPGGVEELDILEVRY 181
>gi|32034024|ref|ZP_00134268.1| COG0782: Transcription elongation factor [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208420|ref|YP_001053645.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae L20]
gi|165976363|ref|YP_001651956.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|303252987|ref|ZP_07339142.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307245856|ref|ZP_07527941.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307247932|ref|ZP_07529966.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307250188|ref|ZP_07532146.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307254829|ref|ZP_07536655.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307259271|ref|ZP_07541000.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307261432|ref|ZP_07543105.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|126097212|gb|ABN74040.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165876464|gb|ABY69512.1| transcription elongation factor [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|302648178|gb|EFL78379.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|306853216|gb|EFM85436.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306855582|gb|EFM87751.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306857787|gb|EFM89885.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306862200|gb|EFM94168.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306866638|gb|EFM98497.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306868889|gb|EFN00693.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 158
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A++ID++ M+ + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+
Sbjct: 61 RIQEIEGKLGNAQIIDVTKMANNGKVIFGATVSLVNADTDEEVTYRIVGDDEANIKEGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I
Sbjct: 121 SVNSPIARGLVGKEVDDSVSIVTPGGKVEFDIINVEYI 158
>gi|145220082|ref|YP_001130791.1| transcription elongation factor GreA [Prosthecochloris vibrioformis
DSM 265]
gi|189042244|sp|A4SFN0|GREA_PROVI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|145206246|gb|ABP37289.1| transcription elongation factor GreA [Chlorobium phaeovibrioides
DSM 265]
Length = 159
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D++ +T G+++++ EL R +++ I+EAR++GDLSENAEY AA+E Q+ E
Sbjct: 1 MSDRVYLTRDGYNRLKDELHELLHVTRAEVLEKIAEARSHGDLSENAEYDAAREQQSQTE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGL 119
R+A+LE+ ++ A ++D + D++ +V L+ + + Y +V +E+D G
Sbjct: 61 ARIADLESKLSSATILDPKHIKTDKVYILTSVELLNLDDKKETLEYTLVSSEESDSDLGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S+ SP+ RALIGK +GD +++ P GE YE+ ++
Sbjct: 121 ISVRSPVGRALIGKAVGDKVTIIVPKGELHYEVKKI 156
>gi|240143459|ref|ZP_04742060.1| transcription elongation factor GreA [Roseburia intestinalis L1-82]
gi|257204492|gb|EEV02777.1| transcription elongation factor GreA [Roseburia intestinalis L1-82]
Length = 159
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 93/155 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K +T +G K++ EL + R + + I EAR GDLSENAEY AAK+ Q E
Sbjct: 1 MDKKNILTYEGLKKLEDELENLKVVRRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE I+ AEV+ D+++ G +V +++ ++ Y+IVG EA+ G +
Sbjct: 61 ARIEELEKILKNAEVVVEEEADLDKVSIGCSVKILDCEFEEELEYKIVGSTEANSLKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+GK++GD ++V P GE +Y++L +
Sbjct: 121 SNESPVGKALLGKQVGDTVTVETPAGEFSYKVLSI 155
>gi|32472148|ref|NP_865142.1| transcription elongation factor greA [Rhodopirellula baltica SH 1]
gi|77416496|sp|Q7UVA0|GREA_RHOBA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|32397520|emb|CAD72826.1| transcription elongation factor greA [Rhodopirellula baltica SH 1]
Length = 159
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 103/157 (65%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+ +P+T +G++KI+ E+ + EE P I++ I+EAR GDL ENAEY A +E Q +
Sbjct: 1 MVESVPMTREGYNKIKAEINRMENEEMPMIVQKIAEAREEGDLKENAEYHAQRENQGMLM 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ EL + I RA +ID+S++ D + FG TV++ + GD++ + +VG + D SG +
Sbjct: 61 AKINELRDKIARASIIDVSSLPKDEVVFGCTVTVEDVAYGDEEQFTLVGAGDEDYDSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++SP + L+GK++G+ V+ P G+ ++IL++ +
Sbjct: 121 LVTSPFGQGLVGKKVGETAEVDVPAGKLKFKILKIEF 157
>gi|191167876|ref|ZP_03029680.1| transcription elongation factor GreB [Escherichia coli B7A]
gi|190902049|gb|EDV61794.1| transcription elongation factor GreB [Escherichia coli B7A]
Length = 158
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + + ++
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGETSWYVNAIEYV 156
>gi|82545761|ref|YP_409708.1| transcription elongation factor GreB [Shigella boydii Sb227]
gi|82778777|ref|YP_405126.1| transcription elongation factor GreB [Shigella dysenteriae Sd197]
gi|110643639|ref|YP_671369.1| transcription elongation factor GreB [Escherichia coli 536]
gi|117625673|ref|YP_858996.1| transcription elongation factor GreB [Escherichia coli APEC O1]
gi|157155011|ref|YP_001464863.1| transcription elongation factor GreB [Escherichia coli E24377A]
gi|161367507|ref|NP_289946.2| transcription elongation factor GreB [Escherichia coli O157:H7
EDL933]
gi|161486092|ref|NP_756047.2| transcription elongation factor GreB [Escherichia coli CFT073]
gi|162139752|ref|NP_312275.2| transcription elongation factor GreB [Escherichia coli O157:H7 str.
Sakai]
gi|168747116|ref|ZP_02772138.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4113]
gi|168753159|ref|ZP_02778166.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4401]
gi|168759431|ref|ZP_02784438.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4501]
gi|168765754|ref|ZP_02790761.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4486]
gi|168772702|ref|ZP_02797709.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4196]
gi|168779490|ref|ZP_02804497.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4076]
gi|168785211|ref|ZP_02810218.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC869]
gi|168797177|ref|ZP_02822184.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC508]
gi|170680405|ref|YP_001745654.1| transcription elongation factor GreB [Escherichia coli SMS-3-5]
gi|191171514|ref|ZP_03033062.1| transcription elongation factor GreB [Escherichia coli F11]
gi|193061828|ref|ZP_03042925.1| transcription elongation factor GreB [Escherichia coli E22]
gi|194426931|ref|ZP_03059483.1| transcription elongation factor GreB [Escherichia coli B171]
gi|195934895|ref|ZP_03080277.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4024]
gi|208806096|ref|ZP_03248433.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4206]
gi|208813018|ref|ZP_03254347.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4045]
gi|208821026|ref|ZP_03261346.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4042]
gi|209400461|ref|YP_002272841.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4115]
gi|215488687|ref|YP_002331118.1| transcription elongation factor GreB [Escherichia coli O127:H6 str.
E2348/69]
gi|217325218|ref|ZP_03441302.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
TW14588]
gi|218550664|ref|YP_002384455.1| transcription elongation factor GreB [Escherichia fergusonii ATCC
35469]
gi|218560464|ref|YP_002393377.1| transcription elongation factor GreB [Escherichia coli S88]
gi|218691683|ref|YP_002399895.1| transcription elongation factor GreB [Escherichia coli ED1a]
gi|218697089|ref|YP_002404756.1| transcription elongation factor GreB [Escherichia coli 55989]
gi|218702151|ref|YP_002409780.1| transcription elongation factor GreB [Escherichia coli IAI39]
gi|218706997|ref|YP_002414516.1| transcription elongation factor GreB [Escherichia coli UMN026]
gi|254795321|ref|YP_003080158.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
TW14359]
gi|260846190|ref|YP_003223968.1| transcription elongation factor GreB [Escherichia coli O103:H2 str.
12009]
gi|260857513|ref|YP_003231404.1| transcription elongation factor GreB [Escherichia coli O26:H11 str.
11368]
gi|260870132|ref|YP_003236534.1| transcription elongation factor GreB [Escherichia coli O111:H- str.
11128]
gi|261224687|ref|ZP_05938968.1| transcription elongation factor [Escherichia coli O157:H7 str.
FRIK2000]
gi|261254418|ref|ZP_05946951.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
FRIK966]
gi|291284742|ref|YP_003501560.1| Transcription elongation factor greB [Escherichia coli O55:H7 str.
CB9615]
gi|293406984|ref|ZP_06650908.1| greB [Escherichia coli FVEC1412]
gi|293412823|ref|ZP_06655491.1| transcription elongation factor GreB [Escherichia coli B354]
gi|293416808|ref|ZP_06659445.1| transcription elongation factor GreB [Escherichia coli B185]
gi|293453712|ref|ZP_06664131.1| transcription elongation factor GreB [Escherichia coli B088]
gi|298382726|ref|ZP_06992321.1| transcription elongation factor GreB [Escherichia coli FVEC1302]
gi|306816256|ref|ZP_07450394.1| transcription elongation factor GreB [Escherichia coli NC101]
gi|307311930|ref|ZP_07591568.1| GreA/GreB family elongation factor [Escherichia coli W]
gi|309785849|ref|ZP_07680480.1| transcription elongation factor GreB [Shigella dysenteriae 1617]
gi|331659695|ref|ZP_08360633.1| transcription elongation factor GreB [Escherichia coli TA206]
gi|331665011|ref|ZP_08365912.1| transcription elongation factor GreB [Escherichia coli TA143]
gi|331670228|ref|ZP_08371067.1| transcription elongation factor GreB [Escherichia coli TA271]
gi|331685046|ref|ZP_08385632.1| transcription elongation factor GreB [Escherichia coli H299]
gi|54037215|sp|P64274|GREB_ECO57 RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|54041323|sp|P64273|GREB_ECOL6 RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|166007061|pdb|2P4V|A Chain A, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
gi|166007062|pdb|2P4V|B Chain B, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
gi|166007063|pdb|2P4V|C Chain C, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
gi|166007064|pdb|2P4V|D Chain D, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
gi|166007065|pdb|2P4V|E Chain E, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
gi|166007066|pdb|2P4V|F Chain F, Crystal Structure Of The Transcript Cleavage Factor, Greb
At 2.6a Resolution
gi|81242925|gb|ABB63635.1| transcription elongation factor [Shigella dysenteriae Sd197]
gi|81247172|gb|ABB67880.1| Transcription elongation factor [Shigella boydii Sb227]
gi|110345231|gb|ABG71468.1| transcription elongation factor GreB [Escherichia coli 536]
gi|115514797|gb|ABJ02872.1| transcription elongation factor GreB [Escherichia coli APEC O1]
gi|157077041|gb|ABV16749.1| transcription elongation factor GreB [Escherichia coli E24377A]
gi|170518123|gb|ACB16301.1| transcription elongation factor GreB [Escherichia coli SMS-3-5]
gi|187771428|gb|EDU35272.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4196]
gi|188018359|gb|EDU56481.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4113]
gi|189002402|gb|EDU71388.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4076]
gi|189358929|gb|EDU77348.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4401]
gi|189364381|gb|EDU82800.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4486]
gi|189369538|gb|EDU87954.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4501]
gi|189374281|gb|EDU92697.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC869]
gi|189380006|gb|EDU98422.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC508]
gi|190908141|gb|EDV67732.1| transcription elongation factor GreB [Escherichia coli F11]
gi|192932618|gb|EDV85215.1| transcription elongation factor GreB [Escherichia coli E22]
gi|194414892|gb|EDX31162.1| transcription elongation factor GreB [Escherichia coli B171]
gi|208725897|gb|EDZ75498.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4206]
gi|208734295|gb|EDZ82982.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4045]
gi|208741149|gb|EDZ88831.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4042]
gi|209161861|gb|ACI39294.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4115]
gi|215266759|emb|CAS11199.1| transcription elongation factor [Escherichia coli O127:H6 str.
E2348/69]
gi|217321439|gb|EEC29863.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
TW14588]
gi|218353821|emb|CAV00173.1| transcription elongation factor [Escherichia coli 55989]
gi|218358205|emb|CAQ90852.1| transcription elongation factor [Escherichia fergusonii ATCC 35469]
gi|218367233|emb|CAR05007.1| transcription elongation factor [Escherichia coli S88]
gi|218372137|emb|CAR19999.1| transcription elongation factor [Escherichia coli IAI39]
gi|218429247|emb|CAR10203.2| transcription elongation factor [Escherichia coli ED1a]
gi|218434094|emb|CAR15011.1| transcription elongation factor [Escherichia coli UMN026]
gi|222035108|emb|CAP77853.1| Transcription elongation factor greB [Escherichia coli LF82]
gi|254594721|gb|ACT74082.1| transcription elongation factor [Escherichia coli O157:H7 str.
TW14359]
gi|257756162|dbj|BAI27664.1| transcription elongation factor GreB [Escherichia coli O26:H11 str.
11368]
gi|257761337|dbj|BAI32834.1| transcription elongation factor GreB [Escherichia coli O103:H2 str.
12009]
gi|257766488|dbj|BAI37983.1| transcription elongation factor GreB [Escherichia coli O111:H- str.
11128]
gi|281180438|dbj|BAI56768.1| transcription elongation factor GreB [Escherichia coli SE15]
gi|284923398|emb|CBG36492.1| transcription elongation factor [Escherichia coli 042]
gi|290764615|gb|ADD58576.1| Transcription elongation factor greB [Escherichia coli O55:H7 str.
CB9615]
gi|291321838|gb|EFE61269.1| transcription elongation factor GreB [Escherichia coli B088]
gi|291425795|gb|EFE98829.1| greB [Escherichia coli FVEC1412]
gi|291431384|gb|EFF04369.1| transcription elongation factor GreB [Escherichia coli B185]
gi|291468470|gb|EFF10963.1| transcription elongation factor GreB [Escherichia coli B354]
gi|294493288|gb|ADE92044.1| transcription elongation factor GreB [Escherichia coli IHE3034]
gi|298276562|gb|EFI18080.1| transcription elongation factor GreB [Escherichia coli FVEC1302]
gi|305850652|gb|EFM51109.1| transcription elongation factor GreB [Escherichia coli NC101]
gi|306908074|gb|EFN38574.1| GreA/GreB family elongation factor [Escherichia coli W]
gi|307555492|gb|ADN48267.1| transcription elongation factor and transcript cleavage
[Escherichia coli ABU 83972]
gi|307628467|gb|ADN72771.1| transcription elongation factor GreB [Escherichia coli UM146]
gi|308926969|gb|EFP72445.1| transcription elongation factor GreB [Shigella dysenteriae 1617]
gi|312947954|gb|ADR28781.1| transcription elongation factor GreB [Escherichia coli O83:H1 str.
NRG 857C]
gi|315062685|gb|ADT77012.1| transcription elongation factor [Escherichia coli W]
gi|320175773|gb|EFW50859.1| Transcription elongation factor GreB [Shigella dysenteriae CDC
74-1112]
gi|320186724|gb|EFW61447.1| Transcription elongation factor GreB [Shigella flexneri CDC 796-83]
gi|320191583|gb|EFW66233.1| Transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC1212]
gi|320197364|gb|EFW71979.1| Transcription elongation factor GreB [Escherichia coli WV_060327]
gi|320639688|gb|EFX09282.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
G5101]
gi|320645186|gb|EFX14202.1| transcription elongation factor GreB [Escherichia coli O157:H- str.
493-89]
gi|320650497|gb|EFX18963.1| transcription elongation factor GreB [Escherichia coli O157:H- str.
H 2687]
gi|320655689|gb|EFX23612.1| transcription elongation factor GreB [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320661473|gb|EFX28888.1| transcription elongation factor GreB [Escherichia coli O55:H7 str.
USDA 5905]
gi|320666496|gb|EFX33479.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
LSU-61]
gi|323154239|gb|EFZ40442.1| transcription elongation factor GreB [Escherichia coli EPECa14]
gi|323162791|gb|EFZ48628.1| transcription elongation factor GreB [Escherichia coli E128010]
gi|323174039|gb|EFZ59667.1| transcription elongation factor GreB [Escherichia coli LT-68]
gi|323179069|gb|EFZ64643.1| transcription elongation factor GreB [Escherichia coli 1180]
gi|323182866|gb|EFZ68267.1| transcription elongation factor GreB [Escherichia coli 1357]
gi|323189005|gb|EFZ74289.1| transcription elongation factor GreB [Escherichia coli RN587/1]
gi|323376727|gb|ADX48995.1| transcription elongation factor GreB [Escherichia coli KO11]
gi|323944372|gb|EGB40447.1| transcription elongation protein GreB [Escherichia coli H120]
gi|323950063|gb|EGB45946.1| transcription elongation proteinGreB [Escherichia coli H252]
gi|323954657|gb|EGB50439.1| transcription elongation proteinGreB [Escherichia coli H263]
gi|323966219|gb|EGB61655.1| transcription elongation proteinGreB [Escherichia coli M863]
gi|323974790|gb|EGB69902.1| transcription elongation proteinGreB [Escherichia coli TW10509]
gi|324111718|gb|EGC05698.1| transcription elongation proteinGreB [Escherichia fergusonii B253]
gi|326337631|gb|EGD61466.1| Transcription elongation factor GreB [Escherichia coli O157:H7 str.
1044]
gi|326344618|gb|EGD68367.1| Transcription elongation factor GreB [Escherichia coli O157:H7 str.
1125]
gi|327251041|gb|EGE62734.1| transcription elongation factor GreB [Escherichia coli STEC_7v]
gi|330909439|gb|EGH37953.1| transcription elongation factor GreB [Escherichia coli AA86]
gi|331052910|gb|EGI24943.1| transcription elongation factor GreB [Escherichia coli TA206]
gi|331057521|gb|EGI29507.1| transcription elongation factor GreB [Escherichia coli TA143]
gi|331062290|gb|EGI34210.1| transcription elongation factor GreB [Escherichia coli TA271]
gi|331077417|gb|EGI48629.1| transcription elongation factor GreB [Escherichia coli H299]
gi|332090241|gb|EGI95339.1| transcription elongation factor GreB [Shigella boydii 3594-74]
Length = 158
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + + ++
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
>gi|168187057|ref|ZP_02621692.1| transcription elongation factor GreA [Clostridium botulinum C str.
Eklund]
gi|169295044|gb|EDS77177.1| transcription elongation factor GreA [Clostridium botulinum C str.
Eklund]
Length = 159
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 94/155 (60%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T++G K+++EL + + +R I + I A +YGDLSEN+EY AK Q EG
Sbjct: 4 SKQYIMTAEGVKKLEEELEYLKTVKRREITEKIKVALSYGDLSENSEYDEAKNEQAFAEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LEN++ A V+D S +S D ++ G+ V + + + ++ IVG EAD +S
Sbjct: 64 RIVQLENMLRNANVVDESEISLDTVSVGSIVKVKDYEFDEIIDFHIVGSAEADPMENKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ALIGK++GD+++V P G +EIL++
Sbjct: 124 NESPVGSALIGKKVGDVVNVPVPDGISKFEILEIR 158
>gi|149921005|ref|ZP_01909465.1| transcription elongation factor GreA [Plesiocystis pacifica SIR-1]
gi|149818137|gb|EDM77593.1| transcription elongation factor GreA [Plesiocystis pacifica SIR-1]
Length = 155
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 66/151 (43%), Positives = 104/151 (68%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K++ ELR ++ +RP+ + I A +GDL ENAEY AAKE Q RMA L
Sbjct: 1 MTPAGLQKLRDELRNIKEVQRPQNVADIETALGHGDLRENAEYHAAKERQAELAARMAYL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ I+ A+VID + M+ +++AFGATV+L++ ++ ++ Y +VG+ E +V++G +SI++PI
Sbjct: 61 ESHISLAQVIDPAEMNSNKVAFGATVTLMDADTEEEVVYCLVGEDETNVKAGKISITAPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+GKE GD +V P G + +EI+ V +
Sbjct: 121 ARALLGKEAGDDATVRLPKGTRDFEIINVEY 151
>gi|37197158|dbj|BAC92999.1| transcription elongation factor [Vibrio vulnificus YJ016]
Length = 185
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L + R+ L
Sbjct: 31 ITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 90
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLVSISSP 125
+ +++D + ++ FGA V + +G+ ++IVG +E G +SI SP
Sbjct: 91 SKFLPEVKIVDYAPQQEGKVFFGAWVEIEN-EAGEVMKFRIVGPEEIYGDAKGYISIDSP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ KE+ D + V P G K + I + +
Sbjct: 150 MARALLKKEVDDEVQVPTPSGIKEWFINSIEY 181
>gi|229098851|ref|ZP_04229787.1| Transcription elongation factor greA [Bacillus cereus Rock3-29]
gi|229105013|ref|ZP_04235667.1| Transcription elongation factor greA [Bacillus cereus Rock3-28]
gi|229117876|ref|ZP_04247238.1| Transcription elongation factor greA [Bacillus cereus Rock1-3]
gi|228665533|gb|EEL21013.1| Transcription elongation factor greA [Bacillus cereus Rock1-3]
gi|228678390|gb|EEL32613.1| Transcription elongation factor greA [Bacillus cereus Rock3-28]
gi|228684524|gb|EEL38466.1| Transcription elongation factor greA [Bacillus cereus Rock3-29]
Length = 182
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 60/152 (39%), Positives = 95/152 (62%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 31 YPMTQEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 90
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I+ + + G TV+ E +GD++ Y IVG EAD G +S S
Sbjct: 91 QLENMIRNAVIIEDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 150
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 151 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 182
>gi|212634061|ref|YP_002310586.1| transcription elongation factor GreA [Shewanella piezotolerans WP3]
gi|212555545|gb|ACJ27999.1| Prokaryotic transcription elongation factor GreA [Shewanella
piezotolerans WP3]
Length = 153
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 67/153 (43%), Positives = 105/153 (68%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++++EL + E RP I +AI EAR GDL ENAEY AA+E Q L E R+ ++
Sbjct: 1 MTIIGAEQLRKELDILKFERRPAIAEAIGEARELGDLKENAEYHAAREEQGLCEARVRDI 60
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ A++ID++TM R+ FG TV+++ ++ ++ Y+IVG+ EA+V+ L+S+SSP
Sbjct: 61 EGKLSHAQIIDVTTMPNTGRVIFGTTVTILNIDTDEEVTYRIVGEDEANVKENLLSVSSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR L+GK + D IS+ PGG +EI +V +I
Sbjct: 121 IARGLVGKSVDDEISITTPGGTSDFEITKVEYI 153
>gi|154686872|ref|YP_001422033.1| transcription elongation factor GreA [Bacillus amyloliquefaciens
FZB42]
gi|308174431|ref|YP_003921136.1| transcription elongation factor [Bacillus amyloliquefaciens DSM 7]
gi|166200649|sp|A7Z726|GREA_BACA2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|154352723|gb|ABS74802.1| GreA [Bacillus amyloliquefaciens FZB42]
gi|307607295|emb|CBI43666.1| transcription elongation factor [Bacillus amyloliquefaciens DSM 7]
Length = 157
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 3/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + P+T +G K++QEL + +R +++ I AR++GDLSEN+EY +AKE Q
Sbjct: 1 MAQEKVFPMTHEGKQKLEQELEQLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ LEN+I A++I+ S + + G TVS +E G++++Y IVG EAD G
Sbjct: 61 VEGRITTLENMIRNAKIIEDDGGS-NVVGLGKTVSFIELPDGEEESYTIVGSAEADPFEG 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA++L+G+++ + ++V PGGE +I+++
Sbjct: 120 KISNDSPIAKSLLGRKVDEEVTVQTPGGEMLVKIVKIS 157
>gi|119897715|ref|YP_932928.1| transcription elongation factor GreB [Azoarcus sp. BH72]
gi|119670128|emb|CAL94041.1| putative transcription elongation factor [Azoarcus sp. BH72]
Length = 222
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+D ++ EL + ERP++++ ++ A GD SEN +Y K+ + R+
Sbjct: 67 KNYMTRRGYDALRTELDQLVRVERPKLVETVAWAAGNGDRSENGDYIYGKKRLREIDRRI 126
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I AEV+D D++ FGATV++ + + D++ +QIVG EA+ G +S
Sbjct: 127 RFLIKRIESAEVVDPERQENVDQVFFGATVTITDADGEDEQTWQIVGVDEANASEGRISW 186
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ +LG+ + +P G + E++ + ++
Sbjct: 187 ISPLARALLKVKLGETVRFMSPAGPREIEVVDIRYV 222
>gi|228902907|ref|ZP_04067048.1| Transcription elongation factor greA [Bacillus thuringiensis IBL
4222]
gi|228856691|gb|EEN01210.1| Transcription elongation factor greA [Bacillus thuringiensis IBL
4222]
Length = 161
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 10 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S
Sbjct: 70 QLENMIRNAVIIKDNGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 129
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 130 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 161
>gi|170695455|ref|ZP_02886600.1| transcription elongation factor GreA [Burkholderia graminis C4D1M]
gi|170139646|gb|EDT07829.1| transcription elongation factor GreA [Burkholderia graminis C4D1M]
Length = 141
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 80/140 (57%), Positives = 101/140 (72%), Gaps = 1/140 (0%)
Query: 20 RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIS 79
+ + ERP +I +I+EARA GDLSENAEY AAKE Q EGR+AE+E+ + A+VID S
Sbjct: 2 QRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIAEIESKLAGAQVIDPS 61
Query: 80 TMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
+ D R+ FGATV L + +SG YQIVGD EAD+ GL+SISSPIARALIGK GD+
Sbjct: 62 QVEADGRVVFGATVELEDLDSGASVKYQIVGDDEADIDHGLISISSPIARALIGKSEGDV 121
Query: 139 ISVNAPGGEKTYEILQVLWI 158
SV APGG + YEI+ V ++
Sbjct: 122 ASVQAPGGVREYEIIAVSYV 141
>gi|149370905|ref|ZP_01890500.1| transcription elongation factor [unidentified eubacterium SCB49]
gi|149355691|gb|EDM44249.1| transcription elongation factor [unidentified eubacterium SCB49]
Length = 158
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 92/156 (58%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T +G +++EL + ERP AI+EAR GDLSENAEY AAKE Q + E
Sbjct: 1 MSKVSYYTLEGLKSLKEELNQLKDVERPAASNAIAEARDKGDLSENAEYDAAKEAQGMLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+++LE I+ A VID S + ++ +TV + +G Y++V E+D+++G +
Sbjct: 61 MRISKLEAIVANARVIDESQLDTSKVLIHSTVKIKNATNGATMTYKLVAQSESDLKTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SPI + L+GK +GD ++ P G +EI+++
Sbjct: 121 SVDSPIGKGLLGKTVGDTAAIQVPSGTMNFEIVEIT 156
>gi|21674267|ref|NP_662332.1| transcription elongation factor GreA [Chlorobium tepidum TLS]
gi|25452984|sp|Q8KCH5|GREA_CHLTE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|21647437|gb|AAM72674.1| transcription elongation factor GreA [Chlorobium tepidum TLS]
Length = 159
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +T G++++++EL E R +++ I+EAR++GDLSENAEY AA+E Q+ E
Sbjct: 1 MSDRIYLTRDGYNRLKEELHLLMTETRKEVLEKIAEARSHGDLSENAEYDAAREEQSQLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119
++ E+EN + A ++D + DR+ +V L ++ D+ Y +V +EAD G
Sbjct: 61 AKIGEIENKLASATILDPKQIKTDRVYILTSVKLRNLDAEDEIIEYTLVSSEEADSDLGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S+ SP+ R+LIGK +GD ++++ P GE YEIL +
Sbjct: 121 ISVRSPVGRSLIGKSVGDKVTISVPKGELHYEILDI 156
>gi|152977979|ref|YP_001343608.1| transcription elongation factor GreB [Actinobacillus succinogenes
130Z]
gi|150839702|gb|ABR73673.1| transcription elongation factor GreB [Actinobacillus succinogenes
130Z]
Length = 158
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G++ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWNALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V L ++ G+ K Y+IVG E D +
Sbjct: 61 RRVRFLMKRLEVLQIVDYHSRQEGKVFFGAWVELENED-GEAKQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+ SP+ARALIGK + D + V P G+ T I ++ +
Sbjct: 120 SVDSPVARALIGKTVDDEVRVETPAGKVTLYINEIWY 156
>gi|325276153|ref|ZP_08141959.1| transcription elongation factor GreA [Pseudomonas sp. TJI-51]
gi|324098713|gb|EGB96753.1| transcription elongation factor GreA [Pseudomonas sp. TJI-51]
Length = 153
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 68/153 (44%), Positives = 100/153 (65%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++EL + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E R+ ++
Sbjct: 1 MTVQGARALEEELTFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARIRDI 60
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E + + VID++T+ ++ FG TV L + ++ YQIVG+ EADV+ G +S S+P
Sbjct: 61 EGRLQNSVVIDVTTIAHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKKGKLSNSAP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARA+IGKE GD + V P G YEI++V I
Sbjct: 121 IARAIIGKEEGDTVVVKTPNGTVEYEIVEVKHI 153
>gi|293390854|ref|ZP_06635188.1| transcription elongation factor GreB [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|290951388|gb|EFE01507.1| transcription elongation factor GreB [Aggregatibacter
actinomycetemcomitans D7S-1]
Length = 160
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G++ + +EL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWNMLDRELKFLWKEERPQVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D S ++ FGA V L ++ G+ K Y+IVG E D + +
Sbjct: 61 RRVRFLTKRLEVLQIVDYSPKQEGKVFFGAWVELENED-GEVKQYRIVGCDEFDPANNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK+ D I+V+ P G+ + ++ +
Sbjct: 120 SIDSPVARALIGKQEDDEITVDTPAGKIWLCVNRIWY 156
>gi|311031568|ref|ZP_07709658.1| transcription elongation factor GreA [Bacillus sp. m3-13]
Length = 157
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + P+T G DK+ QEL + R +++ I AR++GDLSEN+EY +AKE Q
Sbjct: 1 MAQEKVYPMTQAGKDKLVQELENLKSVRRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ LE ++ A++I D + G TV+ VE G+++ Y IVG EAD G
Sbjct: 61 VEGRITLLEQMVRNAKIIQEDK-DTDAVGLGKTVTFVELPDGEEETYTIVGSAEADPFEG 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +L+GK + D +++ PGGE +I+ V
Sbjct: 120 NISNESPMGSSLMGKRVNDEVTIQTPGGEMNVKIVSVK 157
>gi|261867402|ref|YP_003255324.1| transcription elongation factor GreB [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|261412734|gb|ACX82105.1| transcription elongation factor GreB [Aggregatibacter
actinomycetemcomitans D11S-1]
Length = 160
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G++ + +EL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWNMLDRELKFLWKEERPQVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D S ++ FGA V L ++ G+ K Y+IVG E D + +
Sbjct: 61 RRVRFLTKRLEVLQIVDYSPKQESKVFFGAWVELENED-GEVKQYRIVGCDEFDPANNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK+ D I+V+ P G+ + ++ +
Sbjct: 120 SIDSPVARALIGKQEDDEITVDTPAGKIWLCVNRIWY 156
>gi|104780017|ref|YP_606515.1| transcription elongation factor GreA [Pseudomonas entomophila L48]
gi|95109004|emb|CAK13700.1| transcription elongation factor (Transcript cleavage factor greA)
[Pseudomonas entomophila L48]
Length = 160
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E R+
Sbjct: 5 KYPMTVQGARALEEEHLFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARI 64
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + + VID++T+ ++ FG TV L + ++ YQIVG+ EADV+ G +S
Sbjct: 65 RDIEGRLQNSVVIDVTTIAHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKQGKLSS 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+PIARA+IGKE GD + V P G YEI++V I
Sbjct: 125 GAPIARAIIGKEEGDTVVVKTPSGTVEYEIVEVKHI 160
>gi|327399334|ref|YP_004340203.1| transcription elongation factor GreA [Hippea maritima DSM 10411]
gi|327181963|gb|AEA34144.1| transcription elongation factor GreA [Hippea maritima DSM 10411]
Length = 156
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 70/156 (44%), Positives = 103/156 (66%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K+ +T +G+ K+ +E+ Q+ +RP IIK I EARA GDLSENAEY AAKE L E
Sbjct: 1 MAEKMLITPEGYRKLLEEMEDLQKNQRPAIIKEIEEARAKGDLSENAEYHAAKEKHALIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++EL I A+V+D T+ DR+ FG V L + ++ Y IVG+ E+D ++G +
Sbjct: 61 NRISELSKKINNAQVVDPETVPKDRVNFGCKVILYDIEKEEEIEYMIVGEDESDPENGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SI+SPIAR+L+GK+ GD + V P G + +EI ++
Sbjct: 121 SINSPIARSLLGKQEGDEVEVKVPAGVRRFEIEEIK 156
>gi|331268357|ref|YP_004394849.1| transcription elongation factor GreA [Clostridium botulinum
BKT015925]
gi|329124907|gb|AEB74852.1| transcription elongation factor GreA [Clostridium botulinum
BKT015925]
Length = 151
Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats.
Identities = 58/150 (38%), Positives = 93/150 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K++ EL + + +R I + I A +YGDLSEN+EY AK Q EGR+ ++
Sbjct: 1 MTAEGVKKLEDELEYLKTTKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEGRIVQI 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN++ A VID S + D ++ GA V + + + ++ ++ IVG EAD +S SP+
Sbjct: 61 ENMLRNANVIDESEIPKDVVSVGAIVKVKDYDFDEEIDFHIVGSAEADPMENKISNESPV 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
ALIGK++GDI++V P G +EIL++
Sbjct: 121 GSALIGKKVGDIVNVPVPDGISKFEILEIR 150
>gi|323490029|ref|ZP_08095250.1| transcription elongation factor GreA [Planococcus donghaensis
MPA1U2]
gi|323396325|gb|EGA89150.1| transcription elongation factor GreA [Planococcus donghaensis
MPA1U2]
Length = 158
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 101/157 (64%), Gaps = 2/157 (1%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + + P+T+ G K++ EL + + +R +++ I AR +GDLSENAEY +AKE Q
Sbjct: 1 MANEKQFPMTAAGKQKLEDELDFLKTIKRKEVVERIKIARDFGDLSENAEYDSAKEDQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR++ LE++I A +I+ + ++ D + G TV+ +E GD+++Y IVG EAD G
Sbjct: 61 VEGRISTLESMIRNAVIINENELNKDIVRLGTTVTFIEVPDGDQESYTIVGSAEADPLEG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+++IG+ +G+ + V PGGE +IL +
Sbjct: 121 RISNDSPIAKSMIGRTIGEHVKVLTPGGEMEIKILSI 157
>gi|262276837|ref|ZP_06054630.1| transcription elongation factor [alpha proteobacterium HIMB114]
gi|262223940|gb|EEY74399.1| transcription elongation factor [alpha proteobacterium HIMB114]
Length = 158
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 104/158 (65%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK P+T G KI+ EL R+ RP+I++AI+EAR++GDL ENAEY AAKE Q LNE
Sbjct: 1 MDKQPITLSGLQKIRVELDDRKNNTRPKIVQAIAEARSHGDLKENAEYHAAKEEQGLNER 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE I A VID++ + D++ FGAT+++ + + + Y+IVG EADV++GL+
Sbjct: 61 RIKELETTIATANVIDVTKLKKDDKVIFGATITVKDLETDKESKYKIVGKDEADVKNGLL 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ R IGK G+ + P GEK +EI V +I
Sbjct: 121 FYQSPMGRGFIGKIKGEFAEIKTPSGEKNFEITNVQYI 158
>gi|294011426|ref|YP_003544886.1| transcription elongation factor GreA [Sphingobium japonicum UT26S]
gi|292674756|dbj|BAI96274.1| transcription elongation factor GreA [Sphingobium japonicum UT26S]
Length = 158
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 75/157 (47%), Positives = 116/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+K+P+ G+DK+ ++LR + ERP I+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 VEKMPMLQMGYDKLNEQLRELKA-ERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+A+LE+ ++RA++ID T+SGD++ FGATV+L++++ K YQIVG EAD + G++S
Sbjct: 63 TIADLEDKLSRAQIIDPRTLSGDKVVFGATVTLLDEDDKPVK-YQIVGQAEADAKVGMIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ RALIG+++G+ + V+ P G+K Y + ++ +I
Sbjct: 122 YNSPLGRALIGRQIGEEVEVSVPSGDKFYLVDKIDFI 158
>gi|90581398|ref|ZP_01237193.1| transcription elongation factor GreB [Vibrio angustum S14]
gi|90437375|gb|EAS62571.1| transcription elongation factor GreB [Vibrio angustum S14]
Length = 160
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ VT +G++K+++EL + +E+RP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MRTNLVTREGYNKLKKELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +VID S ++ FGA V + +G+ K ++IVG E ++ +S
Sbjct: 61 RVRFLRKRLDVLKVIDYSPQQDGKVFFGAWVEIEN-EAGETKTFRIVGPDEIYGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE+ D I V P G+K + I ++ +
Sbjct: 120 IDSPMARALLSKEVDDDIVVTTPLGKKEWFINEISY 155
>gi|170719896|ref|YP_001747584.1| transcription elongation factor GreA [Pseudomonas putida W619]
gi|169757899|gb|ACA71215.1| transcription elongation factor GreA [Pseudomonas putida W619]
Length = 160
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 101/156 (64%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E R+
Sbjct: 5 KYPMTVQGARALEEEHLFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARI 64
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + + VID++T+ ++ FG TV L + ++ +YQIVG+ EADV+ G +S
Sbjct: 65 RDIEGRLQNSVVIDVTTIPHTGKVIFGTTVVLANTETDEEVSYQIVGEDEADVKQGKLSS 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+PIARA+IGKE GD + V P G YEI++V I
Sbjct: 125 GAPIARAIIGKEEGDTVVVKTPSGSVEYEIVEVKHI 160
>gi|152976794|ref|YP_001376311.1| transcription elongation factor GreA [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|189042233|sp|A7GT58|GREA_BACCN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|152025546|gb|ABS23316.1| transcription elongation factor GreA [Bacillus cytotoxicus NVH
391-98]
Length = 158
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G +K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 7 YPMTQEGKEKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I+ + + G TV+ E GD++ Y IVG EAD G +S S
Sbjct: 67 QLENMIRNAVIIEDTGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ + + PGGE EI+ V
Sbjct: 127 PIAKSLLGKQIGEKVVIQTPGGEMQVEIISVK 158
>gi|85858479|ref|YP_460681.1| transcription elongation factor [Syntrophus aciditrophicus SB]
gi|123725222|sp|Q2LR03|GREA_SYNAS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|85721570|gb|ABC76513.1| transcription elongation factor [Syntrophus aciditrophicus SB]
Length = 161
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 108/157 (68%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T GF+ +++EL + P IK I ARA+GDLSENAEY AAKE Q+ G
Sbjct: 1 MEKMPITKSGFENLKKELEHLKCVLIPANIKDIEIARAHGDLSENAEYTAAKEKQSFLHG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ ELEN + + VID+ +S DRI FGATV + E ++G + NYQ+VG E+++ +S
Sbjct: 61 KLQELENNLALSNVIDLKMLSDDRIVFGATVIIEEASTGKQTNYQLVGPFESNISENKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++SPI +ALIGK +GD + V+ PGG + +E++ + +I
Sbjct: 121 VTSPIGKALIGKSIGDEVKVHTPGGIRNFEVVDI-YI 156
>gi|296131771|ref|YP_003639018.1| GreA/GreB family elongation factor [Thermincola sp. JR]
gi|296030349|gb|ADG81117.1| GreA/GreB family elongation factor [Thermincola potens JR]
Length = 158
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K + +T G K++ EL + +R + + I +A +GD+SEN+EY+ AK Q
Sbjct: 1 MVEKEVILTLDGLKKLEHELEQLKTVKRREVAERIKQAIEFGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A VID + D ++ G+TV L + GD+ Y IVG EAD +
Sbjct: 61 EGRILTLEKMLRNARVIDEGDVHTDVVSIGSTVLLKDLEFGDEIAYTIVGSAEADPSANK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +AL+G++ G+II VN P G Y+I+ +
Sbjct: 121 ISNESPVGKALLGQKTGEIIEVNVPAGTLKYQIMGIS 157
>gi|170766595|ref|ZP_02901048.1| transcription elongation factor GreB [Escherichia albertii TW07627]
gi|170124033|gb|EDS92964.1| transcription elongation factor GreB [Escherichia albertii TW07627]
Length = 158
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + + ++
Sbjct: 121 DSPMARALLKKEVGDLAIVNTPAGEASWYVNAIEYV 156
>gi|152991056|ref|YP_001356778.1| transcription elongation factor GreA [Nitratiruptor sp. SB155-2]
gi|166200682|sp|A6Q4L2|GREA_NITSB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|151422917|dbj|BAF70421.1| transcription elongation factor GreA [Nitratiruptor sp. SB155-2]
Length = 163
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K P+T G++KIQ+E + EERP++++ I A+ +GDL ENAEY AAKE +
Sbjct: 1 MEQKEPMTQYGYEKIQKEFEALK-EERPKVVEEIERAKEHGDLRENAEYHAAKERLAFID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ EL +++ RA+VID S + D++ FG+TV L++ ++ Y IVG E++ + GL+
Sbjct: 60 ARLTELSDLLARAQVIDPSKLPHDKVGFGSTVKLLDIEEEEEIEYTIVGSTESNPEHGLI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S ++P+AR LIGKE GD I+V P GE +E+L+V +
Sbjct: 120 SYNTPLARQLIGKEEGDEITVKLPKGEIDFEVLEVYY 156
>gi|148979040|ref|ZP_01815285.1| transcription elongation factor GreA [Vibrionales bacterium SWAT-3]
gi|145962013|gb|EDK27301.1| transcription elongation factor GreA [Vibrionales bacterium SWAT-3]
Length = 157
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 67/158 (42%), Positives = 109/158 (68%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +++ EL + RP I AI EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGAQQLRDELDRLLK-LRPVISAAIGEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A++ID++ M + +I FG TV+L++ ++ ++ YQIV + EAD+++G +
Sbjct: 60 QIRDIEYKLSLAQIIDVTQMENTGKIIFGTTVTLIDVDTDEEYRYQIVSEDEADIKTGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIAR LIGK GD + ++ PGG+K YEI +V +I
Sbjct: 120 SVKSPIARGLIGKMEGDEVMISTPGGDKDYEIDKVEYI 157
>gi|330807473|ref|YP_004351935.1| transcription elongation factor [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327375581|gb|AEA66931.1| Transcription elongation factor [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 160
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 101/156 (64%), Gaps = 1/156 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P+T +G +++E + + ERPR+ +AI EAR GDL ENAEY AA+E Q + E R+
Sbjct: 5 KYPMTVQGAKALEEEHAFLTKVERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARV 64
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G +S+
Sbjct: 65 RDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKLGKISV 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARALI KE GD++ V PGG YEI++V I
Sbjct: 125 GSPIARALIAKEEGDVVVVKTPGGVIEYEIVEVRHI 160
>gi|254038573|ref|ZP_04872629.1| transcription elongation factor greB [Escherichia sp. 1_1_43]
gi|300815398|ref|ZP_07095623.1| transcription elongation factor GreB [Escherichia coli MS 107-1]
gi|300946852|ref|ZP_07161092.1| transcription elongation factor GreB [Escherichia coli MS 116-1]
gi|300956734|ref|ZP_07169005.1| transcription elongation factor GreB [Escherichia coli MS 175-1]
gi|301645845|ref|ZP_07245760.1| transcription elongation factor GreB [Escherichia coli MS 146-1]
gi|332281953|ref|ZP_08394366.1| transcription elongation factor and transcript cleavage [Shigella
sp. D9]
gi|606340|gb|AAA58203.1| ORF_o170 [Escherichia coli str. K-12 substr. MG1655]
gi|226839079|gb|EEH71102.1| transcription elongation factor greB [Escherichia sp. 1_1_43]
gi|300316490|gb|EFJ66274.1| transcription elongation factor GreB [Escherichia coli MS 175-1]
gi|300453461|gb|EFK17081.1| transcription elongation factor GreB [Escherichia coli MS 116-1]
gi|300532290|gb|EFK53352.1| transcription elongation factor GreB [Escherichia coli MS 107-1]
gi|301075923|gb|EFK90729.1| transcription elongation factor GreB [Escherichia coli MS 146-1]
gi|324018723|gb|EGB87942.1| transcription elongation factor GreB [Escherichia coli MS 117-3]
gi|332104305|gb|EGJ07651.1| transcription elongation factor and transcript cleavage [Shigella
sp. D9]
Length = 170
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 74 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + + ++
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 168
>gi|308047929|ref|YP_003911495.1| transcription elongation factor GreB [Ferrimonas balearica DSM
9799]
gi|307630119|gb|ADN74421.1| transcription elongation factor GreB [Ferrimonas balearica DSM
9799]
Length = 161
Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G++ ++ EL++ +EERPR+ +++SEA A GD SENAEY K+ +
Sbjct: 1 MKKADLITKDGWNALEAELKYLWKEERPRVTQSVSEAAALGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V++ ++ FGA V L + GDKK Y++VG E DV+ G +
Sbjct: 61 RRVRFLSKRMEVLRVVEPDPRQEGKVYFGAWVELEN-DDGDKKRYRLVGPDEFDVKVGKI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+GK + D + V P G++ + I ++ +
Sbjct: 120 SIDSPLARALLGKAVDDEVKVRTPNGDQLFYINEIRY 156
>gi|284008800|emb|CBA75550.1| transcription elongation factor [Arsenophonus nasoniae]
Length = 160
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 95/156 (60%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K+++EL++ +EERP++ +A+SEA A GD SENAEY K+ +
Sbjct: 1 MKNNYITREGWNKLEKELKFLWREERPKVTQAVSEAAALGDRSENAEYIYGKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +++D R+ FGA V + + +G K +++VG E + +S
Sbjct: 61 RIRFLSKRLEILKIVDPDPRQEGRVYFGAWVKVQD-ENGVIKVFRLVGADEFNPIKKWIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+SP+AR L+GK++ D ++VN P G TY IL++ +
Sbjct: 120 INSPVARELLGKQIDDEVTVNTPNGIITYWILEINY 155
>gi|330958059|gb|EGH58319.1| transcription elongation factor GreA [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 158
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E
Sbjct: 1 MIKYPMTVQGARALEEELAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A VID++T+ ++ FG TV + + ++ YQIVG+ EAD++ G +
Sbjct: 61 RIRDIEGRMQNAVVIDVTTIEPTGKVIFGTTVEIANVETDERVTYQIVGEDEADIKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARALI KE GD++ V P G YEI++V I
Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158
>gi|188535334|ref|YP_001909131.1| transcription elongation factor GreB [Erwinia tasmaniensis Et1/99]
gi|188030376|emb|CAO98267.1| Transcription elongation factor GreB [Erwinia tasmaniensis Et1/99]
Length = 159
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTKLITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + ++D S ++ FGA V + + GD K ++IVG E ++ +S
Sbjct: 61 RVRYLTKCLEQLRIVDYSPQQEGKVFFGAWVEVEN-DDGDIKRFRIVGYDEIFGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARAL+ KE+GD +V P GE + + + +I
Sbjct: 120 IDSPMARALLKKEVGDAATVLTPAGEALWYVNDIRYI 156
>gi|225010165|ref|ZP_03700637.1| transcription elongation factor GreA [Flavobacteria bacterium
MS024-3C]
gi|225005644|gb|EEG43594.1| transcription elongation factor GreA [Flavobacteria bacterium
MS024-3C]
Length = 158
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 98/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MSKVSYYTAEGLKKLKDELNQLRDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A++E I+ A +ID S + ++ +TV L +G + +Y +V + EAD++SG +
Sbjct: 61 LKIAKMEGILAGARLIDESQLDNSKVLVLSTVKLKNTQNGMQMSYTLVAESEADLKSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S++SPI + L+GK++GDI + P G +EI+ +
Sbjct: 121 SVNSPIGQGLLGKKVGDIAEIKVPNGTMGFEIVAIT 156
>gi|110835318|ref|YP_694177.1| transcription elongation factor GreB [Alcanivorax borkumensis SK2]
gi|110648429|emb|CAL17905.1| transcription elongation factor GreB [Alcanivorax borkumensis SK2]
Length = 171
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G+ K+ EL++ +++RP I +++ EA A GD SENAEY K+ + R+
Sbjct: 14 YITVEGYHKLNDELQYLWKQKRPEITQSVQEAAAQGDRSENAEYIYGKKQLREIDRRVRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V+D R+ FGA V L ++GD + Y++VG E D G +SI +P
Sbjct: 74 LSKRLDDMTVVDRVPEDQSRVFFGAWVELEN-DTGDTETYRLVGPDETDAGRGYISIDAP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ K++ D + V P GE+ I ++ +
Sbjct: 133 LARALLKKQVDDEVEVRTPAGERCLFINRIWY 164
>gi|59711083|ref|YP_203859.1| transcription elongation factor GreA [Vibrio fischeri ES114]
gi|197336313|ref|YP_002155232.1| transcription elongation factor GreA [Vibrio fischeri MJ11]
gi|59479184|gb|AAW84971.1| transcription elongation factor [Vibrio fischeri ES114]
gi|197317803|gb|ACH67250.1| transcription elongation factor GreA [Vibrio fischeri MJ11]
Length = 157
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 107/158 (67%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T +G ++ EL + RP I KAI EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MDKVPMTVRGEKLLRDELEVLLK-RRPLISKAIGEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M + ++ FG TV+L++ N+ ++ YQIV D EA+++ G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMTNTGKVIFGTTVTLIDVNTDEEVKYQIVADDEANIKEGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +++ PGG K +EI V +I
Sbjct: 120 SVNSPIARGLIGKMEGDEVNIQTPGGTKEFEIDAVDYI 157
>gi|312968284|ref|ZP_07782494.1| transcription elongation factor GreB [Escherichia coli 2362-75]
gi|312287109|gb|EFR15019.1| transcription elongation factor GreB [Escherichia coli 2362-75]
Length = 158
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K + A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVIWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + + ++
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
>gi|329924684|ref|ZP_08279699.1| transcription elongation factor GreA [Paenibacillus sp. HGF5]
gi|328940518|gb|EGG36840.1| transcription elongation factor GreA [Paenibacillus sp. HGF5]
Length = 163
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 92/156 (58%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++ +T +G+DK+Q+EL + +R + + I A +YGDL EN+EY +AK Q E
Sbjct: 6 MAEELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFME 65
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE + A ++D +S + G+ V L + ++ YQ+VG EADV + V
Sbjct: 66 TRIIILEKTLNNARIVDAKDISSTTVNVGSNVVLNDIEFSERLEYQVVGPAEADVANNKV 125
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +AL+GK +GD + V AP G YE+L++
Sbjct: 126 SYESPLGKALMGKAVGDKVHVEAPMGIVKYELLEIK 161
>gi|289522343|ref|ZP_06439197.1| transcription elongation factor GreA [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289504179|gb|EFD25343.1| transcription elongation factor GreA [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 164
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 93/154 (60%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D I +T +G+ K++ EL + E R I + + EAR++GDLSENAEY AAKE Q E R
Sbjct: 10 DVILMTREGYQKLRAELIKLRSEGRSEISQQLEEARSFGDLSENAEYHAAKEAQAKLEAR 69
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +LE +++A+VI+ + ++ G V+L + + + Y IV +E D + +S+
Sbjct: 70 IQQLETQLSKAKVIENDQIDTSQVTLGTKVTLKDLDLNREFTYVIVNSEETDPNNHKISV 129
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SSP+ +A+IGK +GD + AP G + +IL +
Sbjct: 130 SSPVGQAIIGKSVGDEVIARAPRGVRRLKILNIE 163
>gi|261341905|ref|ZP_05969763.1| transcription elongation factor GreB [Enterobacter cancerogenus
ATCC 35316]
gi|288315808|gb|EFC54746.1| transcription elongation factor GreB [Enterobacter cancerogenus
ATCC 35316]
Length = 157
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V + + GD ++IVG E + +SI SP+
Sbjct: 66 TKCLEHLKIVDYSPQQEGKVFFGAWVEIEN-DDGDTLRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ V PGGE ++ + ++ ++
Sbjct: 125 ARALLKKEVGDLAVVQTPGGEASWYVNEIEYV 156
>gi|42783507|ref|NP_980754.1| transcription elongation factor GreA [Bacillus cereus ATCC 10987]
gi|206975946|ref|ZP_03236856.1| transcription elongation factor GreA [Bacillus cereus H3081.97]
gi|217961869|ref|YP_002340439.1| transcription elongation factor GreA [Bacillus cereus AH187]
gi|222097822|ref|YP_002531879.1| transcription elongation factor grea [Bacillus cereus Q1]
gi|81409080|sp|Q730F5|GREA_BACC1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|226737009|sp|B7HQD7|GREA_BACC7 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799547|sp|B9IYE4|GREA_BACCQ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|42739436|gb|AAS43362.1| transcription elongation factor GreA [Bacillus cereus ATCC 10987]
gi|206745698|gb|EDZ57095.1| transcription elongation factor GreA [Bacillus cereus H3081.97]
gi|217066147|gb|ACJ80397.1| transcription elongation factor GreA [Bacillus cereus AH187]
gi|221241880|gb|ACM14590.1| transcription elongation factor GreA [Bacillus cereus Q1]
Length = 158
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 7 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E GD++ Y IVG EAD G +S S
Sbjct: 67 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 127 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 158
>gi|294638113|ref|ZP_06716370.1| transcription elongation factor GreB [Edwardsiella tarda ATCC
23685]
gi|291088745|gb|EFE21306.1| transcription elongation factor GreB [Edwardsiella tarda ATCC
23685]
Length = 158
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+DK++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYDKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ +++D S ++ FGA V + + G K ++IVG E ++ +SI SP+
Sbjct: 66 RKCMSMLKIVDYSPQQDGKVFFGAWVEVEN-DDGVIKRFRIVGYDEIFGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ KE+GD +V P GE + I + +
Sbjct: 125 ARALLKKEVGDAATVITPSGEALWYINAIDY 155
>gi|219849234|ref|YP_002463667.1| transcription elongation factor GreA [Chloroflexus aggregans DSM
9485]
gi|254799553|sp|B8G358|GREA_CHLAD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|219543493|gb|ACL25231.1| transcription elongation factor GreA [Chloroflexus aggregans DSM
9485]
Length = 157
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T +G +++ EL ER +I + I+ A+ GD+SE+ EY+ AK+ Q L
Sbjct: 1 MTEKPTYLTREGRARLEAELEHLMTVERKQIAERIAAAKELGDISESGEYEDAKKAQALL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ EL+++++RAE+ID S + G++V++ ++ G ++ + IVG EA+ + G
Sbjct: 61 EGRIRELKHLLSRAEIIDEDQASTGEVRIGSSVTVRFEDDGSEETWTIVGSAEANPRQGR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI AL+GK + + ++V+ P G IL+V
Sbjct: 121 ISNESPIGAALLGKRVRNKVTVHTPSGVMKLTILKVR 157
>gi|30264449|ref|NP_846826.1| transcription elongation factor GreA [Bacillus anthracis str. Ames]
gi|47529904|ref|YP_021253.1| transcription elongation factor GreA [Bacillus anthracis str. 'Ames
Ancestor']
gi|47566566|ref|ZP_00237388.1| transcription elongation factor GreA [Bacillus cereus G9241]
gi|49187271|ref|YP_030523.1| transcription elongation factor GreA [Bacillus anthracis str.
Sterne]
gi|49481456|ref|YP_038430.1| transcription elongation factor GreA [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|52141127|ref|YP_085702.1| transcription elongation factor GreA [Bacillus cereus E33L]
gi|165872735|ref|ZP_02217363.1| transcription elongation factor GreA [Bacillus anthracis str.
A0488]
gi|167634587|ref|ZP_02392907.1| transcription elongation factor GreA [Bacillus anthracis str.
A0442]
gi|167638510|ref|ZP_02396786.1| transcription elongation factor GreA [Bacillus anthracis str.
A0193]
gi|170687498|ref|ZP_02878715.1| transcription elongation factor GreA [Bacillus anthracis str.
A0465]
gi|170707370|ref|ZP_02897824.1| transcription elongation factor GreA [Bacillus anthracis str.
A0389]
gi|177653224|ref|ZP_02935476.1| transcription elongation factor GreA [Bacillus anthracis str.
A0174]
gi|227817158|ref|YP_002817167.1| transcription elongation factor GreA [Bacillus anthracis str. CDC
684]
gi|229602899|ref|YP_002868667.1| transcription elongation factor GreA [Bacillus anthracis str.
A0248]
gi|38372311|sp|Q81LK9|GREA_BACAN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|81394760|sp|Q6HDE6|GREA_BACHK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|81686118|sp|Q634G5|GREA_BACCZ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799545|sp|C3P968|GREA_BACAA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799546|sp|C3L5Y5|GREA_BACAC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|30259107|gb|AAP28312.1| transcription elongation factor GreA [Bacillus anthracis str. Ames]
gi|47505052|gb|AAT33728.1| transcription elongation factor GreA [Bacillus anthracis str. 'Ames
Ancestor']
gi|47556596|gb|EAL14928.1| transcription elongation factor GreA [Bacillus cereus G9241]
gi|49181198|gb|AAT56574.1| transcription elongation factor GreA [Bacillus anthracis str.
Sterne]
gi|49333012|gb|AAT63658.1| transcription elongation factor [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51974596|gb|AAU16146.1| transcription elongation factor [Bacillus cereus E33L]
gi|164711511|gb|EDR17060.1| transcription elongation factor GreA [Bacillus anthracis str.
A0488]
gi|167513358|gb|EDR88728.1| transcription elongation factor GreA [Bacillus anthracis str.
A0193]
gi|167530039|gb|EDR92774.1| transcription elongation factor GreA [Bacillus anthracis str.
A0442]
gi|170127614|gb|EDS96487.1| transcription elongation factor GreA [Bacillus anthracis str.
A0389]
gi|170668693|gb|EDT19439.1| transcription elongation factor GreA [Bacillus anthracis str.
A0465]
gi|172081506|gb|EDT66578.1| transcription elongation factor GreA [Bacillus anthracis str.
A0174]
gi|227003868|gb|ACP13611.1| transcription elongation factor GreA [Bacillus anthracis str. CDC
684]
gi|229267307|gb|ACQ48944.1| transcription elongation factor GreA [Bacillus anthracis str.
A0248]
Length = 158
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 95/152 (62%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 7 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S
Sbjct: 67 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 127 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 158
>gi|259910054|ref|YP_002650410.1| transcription elongation factor GreB [Erwinia pyrifoliae Ep1/96]
gi|224965676|emb|CAX57208.1| Transcription elongation factor [Erwinia pyrifoliae Ep1/96]
Length = 159
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTKLITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + ++D S ++ FGA V + + GD K ++IVG E ++ +S
Sbjct: 61 RVRYLTKCLEQLRIVDYSPQQDGKVFFGAWVEVEN-DDGDIKRFRIVGYDEIFGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARAL+ KE+GD +V P GE + I + ++
Sbjct: 120 IDSPMARALLKKEVGDAATVFTPAGEALWYINDISYV 156
>gi|254163334|ref|YP_003046442.1| transcription elongation factor GreB [Escherichia coli B str.
REL606]
gi|297517135|ref|ZP_06935521.1| transcription elongation factor GreB [Escherichia coli OP50]
gi|242378929|emb|CAQ33727.1| transcription elongation factor GreB [Escherichia coli BL21(DE3)]
gi|253975235|gb|ACT40906.1| transcription elongation factor GreB [Escherichia coli B str.
REL606]
gi|253979391|gb|ACT45061.1| transcription elongation factor GreB [Escherichia coli BL21(DE3)]
Length = 158
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++KI+QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKIKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + + ++
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
>gi|307295447|ref|ZP_07575283.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum
L-1]
gi|306878486|gb|EFN09706.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum
L-1]
Length = 158
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 75/157 (47%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+K+P+ G+DK+ +LR + ERP I+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 VEKMPMLQMGYDKLNAQLRELKA-ERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+A+LE+ ++RA++ID +T+SGD+I FGATV+L++++ YQIVG EAD + G++S
Sbjct: 63 TIADLEDKLSRAQIIDPTTLSGDKIVFGATVTLLDED-EKPVKYQIVGQAEADAKVGMIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ RALIG+++G+ + V+ P G+K Y + ++ +I
Sbjct: 122 YNSPLGRALIGRQIGEEVEVSVPSGDKFYLVDKIDFI 158
>gi|24053876|gb|AAN44886.1| transcription elongation factor and transcript cleavage factor
[Shigella flexneri 2a str. 301]
gi|30043573|gb|AAP19293.1| transcription elongation factor and transcript cleavage factor
[Shigella flexneri 2a str. 2457T]
Length = 170
Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 74 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE + + + ++
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEANWYVNAIEYV 168
>gi|302185422|ref|ZP_07262095.1| transcription elongation factor GreA [Pseudomonas syringae pv.
syringae 642]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E
Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A VID++T+ ++ FG TV + + + YQIVG+ EAD++ G +
Sbjct: 61 RIRDIEGRMQNAVVIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARALI KE GD++ V P G YEI++V I
Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158
>gi|190150271|ref|YP_001968796.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|303251385|ref|ZP_07337562.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307252570|ref|ZP_07534465.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307256998|ref|ZP_07538774.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307263610|ref|ZP_07545224.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189915402|gb|ACE61654.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302649739|gb|EFL79918.1| transcription elongation factor GreA [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306859975|gb|EFM91993.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306864482|gb|EFM96389.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306871073|gb|EFN02803.1| Transcription elongation factor greA [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A++ID++ M+ + ++ FGATVSLV ++ ++ Y+IVGD EA+++ GL+
Sbjct: 61 RIQEIEGKLGNAQIIDVTKMTNNGKVIFGATVSLVNADTEEEVTYRIVGDDEANIKEGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR L+GKE+ D +S+ PGG+ ++I+ V +I
Sbjct: 121 SVNSPIARGLVGKEVDDSVSIVTPGGKVEFDIINVEYI 158
>gi|163787161|ref|ZP_02181608.1| putative transcription elongation factor [Flavobacteriales
bacterium ALC-1]
gi|159877049|gb|EDP71106.1| putative transcription elongation factor [Flavobacteriales
bacterium ALC-1]
Length = 157
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 95/156 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T++G K+++EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E
Sbjct: 1 MSKVSYYTAEGLKKLREELSQLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+++++E + A VID S + ++ + V + + +G + Y +V + EAD+ SG +
Sbjct: 61 MKISKMEETLAGARVIDESQLDTSKVLALSIVKIKNQMNGMEMTYTLVAESEADLASGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S++SPI + L+GK +GD + P G ++IL++
Sbjct: 121 SVNSPIGKGLLGKSVGDTAEIQVPNGTMKFDILEIS 156
>gi|295136274|ref|YP_003586950.1| transcription elongation factor GreA [Zunongwangia profunda SM-A87]
gi|294984289|gb|ADF54754.1| transcription elongation factor GreA [Zunongwangia profunda SM-A87]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 60/155 (38%), Positives = 98/155 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T++G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MSKVSYYTAEGLKKLRDELNHLKDVERPRASEAIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE ++ A VID S + ++ + V + +N+G + Y++V EAD+++G +
Sbjct: 61 MKIAKLEEVVANARVIDESQLDTSKVLIHSHVKIKNQNNGAEVKYKLVAQSEADLKTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S+ SPI + L+GK++G++ + P G +E+L++
Sbjct: 121 SVDSPIGKGLLGKKVGEVADIAVPSGTMKFEVLEI 155
>gi|153938788|ref|YP_001392874.1| transcription elongation factor GreA [Clostridium botulinum F str.
Langeland]
gi|168183600|ref|ZP_02618264.1| transcription elongation factor GreA [Clostridium botulinum Bf]
gi|170756932|ref|YP_001783160.1| transcription elongation factor GreA [Clostridium botulinum B1 str.
Okra]
gi|170758438|ref|YP_001788860.1| transcription elongation factor GreA [Clostridium botulinum A3 str.
Loch Maree]
gi|237796981|ref|YP_002864533.1| transcription elongation factor GreA [Clostridium botulinum Ba4
str. 657]
gi|229485765|sp|B1IGJ3|GREA_CLOBK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238686691|sp|A7GJB4|GREA_CLOBL RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238688748|sp|B1KTC2|GREA_CLOBM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|259647638|sp|C3KVU0|GREA_CLOB6 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|152934684|gb|ABS40182.1| transcription elongation factor GreA [Clostridium botulinum F str.
Langeland]
gi|169122144|gb|ACA45980.1| transcription elongation factor GreA [Clostridium botulinum B1 str.
Okra]
gi|169405427|gb|ACA53838.1| transcription elongation factor GreA [Clostridium botulinum A3 str.
Loch Maree]
gi|182673170|gb|EDT85131.1| transcription elongation factor GreA [Clostridium botulinum Bf]
gi|229263650|gb|ACQ54683.1| transcription elongation factor GreA [Clostridium botulinum Ba4
str. 657]
gi|295320851|gb|ADG01229.1| transcription elongation factor GreA [Clostridium botulinum F str.
230613]
Length = 160
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 91/154 (59%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EG
Sbjct: 4 AKKYVMTYEGVKKLEEELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S
Sbjct: 64 RIIQLENMLKNASIVDENEVPKDIVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ LIGK++GDII V P G YEIL+V
Sbjct: 124 NESPVGHGLIGKKVGDIIEVTVPDGVSKYEILEV 157
>gi|39996303|ref|NP_952254.1| transcription elongation factor GreB [Geobacter sulfurreducens PCA]
gi|39983183|gb|AAR34577.1| transcription elongation factor GreB [Geobacter sulfurreducens PCA]
gi|298505313|gb|ADI84036.1| transcription elongation factor GreB [Geobacter sulfurreducens
KN400]
Length = 161
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G K++ EL W +EERPR+ + +++A A GD SENAEY K+ + R+
Sbjct: 7 YITPEGAKKLRTELTWLWKEERPRVTQGVADAAAEGDRSENAEYIYGKKRLREIDRRIRF 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V+D + D++ FGA V L + GD+ Y++VG E D G +S+ SP
Sbjct: 67 LTQRLDALTVVDAPPPATDKVFFGAWVRLENEE-GDEVVYRVVGPDETDAAKGHISLDSP 125
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ ++L+G+ GD + V P GE + +L+V +
Sbjct: 126 MGKSLLGRREGDEVHVRRPAGEAVFTVLEVGY 157
>gi|23099457|ref|NP_692923.1| transcriptional elongation factor [Oceanobacillus iheyensis HTE831]
gi|38372370|sp|Q8EPT6|GREA_OCEIH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|22777686|dbj|BAC13958.1| transcriptional elongation factor [Oceanobacillus iheyensis HTE831]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 58/152 (38%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T +G DK+++EL + + + R +++ I AR +GDLSEN+EY AAK+ Q E R+
Sbjct: 7 YYMTQEGKDKLEEELHYLKTDRRQEVVERIKVARDFGDLSENSEYDAAKDEQAFVEQRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
++E +I A +I+ + + ++ G +VS VE GD++ Y IVG EAD G +S S
Sbjct: 67 QVEKMIRNAVIIENDNDNPNIVSLGKSVSFVELPDGDEETYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+A +L+GKE+G+ ++V PGG+ I V
Sbjct: 127 PMATSLLGKEIGEEVTVTTPGGDIDVRITNVE 158
>gi|296105101|ref|YP_003615247.1| transcription elongation factor GreB [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295059560|gb|ADF64298.1| transcription elongation factor GreB [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 157
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V + + G+ ++IVG E + +SI SP+
Sbjct: 66 TKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGNTLRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ V P GE ++ + ++ ++
Sbjct: 125 ARALLKKEVGDLAVVQTPAGEASWYVNEITYV 156
>gi|66047417|ref|YP_237258.1| transcription elongation factor GreA [Pseudomonas syringae pv.
syringae B728a]
gi|63258124|gb|AAY39220.1| Prokaryotic transcription elongation factor GreA [Pseudomonas
syringae pv. syringae B728a]
gi|330969641|gb|EGH69707.1| transcription elongation factor GreA [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 158
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E
Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G +
Sbjct: 61 RIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARALI KE GD++ V P G YEI++V I
Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158
>gi|300857282|ref|YP_003782266.1| putative transcription elongation factor [Clostridium ljungdahlii
DSM 13528]
gi|300437397|gb|ADK17164.1| predicted transcription elongation factor [Clostridium ljungdahlii
DSM 13528]
Length = 151
Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 88/150 (58%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL + + +R I++ I A ++GDLSEN+EY +AK Q EGR+ +L
Sbjct: 1 MTYEGITKLEDELEYLKTAKRREIMEKIKVALSFGDLSENSEYDSAKNEQAFVEGRIVQL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN++ A ++D + + G+ V + + + ++ Y IVG EAD + +S SP+
Sbjct: 61 ENMLKNATIVDEEEIPPGVVGIGSIVKVRDYDFNEEVEYLIVGSAEADPINNKISNESPV 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ L+GK+ GDI+ V P G YEIL +
Sbjct: 121 GKGLVGKKAGDIVEVQVPDGVSKYEILSIR 150
>gi|74313909|ref|YP_312328.1| transcription elongation factor GreB [Shigella sonnei Ss046]
gi|73857386|gb|AAZ90093.1| Transcription elongation factor [Shigella sonnei Ss046]
gi|323164968|gb|EFZ50759.1| transcription elongation factor GreB [Shigella sonnei 53G]
Length = 158
Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + ++++ S ++ FGA V + + G ++IVG E + +SI
Sbjct: 62 VRYLTKCMENLKIVNYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + + ++
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156
>gi|168180989|ref|ZP_02615653.1| transcription elongation factor GreA [Clostridium botulinum NCTC
2916]
gi|226950976|ref|YP_002806067.1| transcription elongation factor GreA [Clostridium botulinum A2 str.
Kyoto]
gi|254799555|sp|C1FNC6|GREA_CLOBJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|182668066|gb|EDT80045.1| transcription elongation factor GreA [Clostridium botulinum NCTC
2916]
gi|226841785|gb|ACO84451.1| transcription elongation factor GreA [Clostridium botulinum A2 str.
Kyoto]
Length = 160
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 91/154 (59%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EG
Sbjct: 4 AKKYVMTYEGVKKLEEELEFLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S
Sbjct: 64 RIIQLENMLKNASIVDENEVPKDIVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ LIGK++GDII V P G YEIL+V
Sbjct: 124 NESPVGHGLIGKKVGDIIEVTVPDGVSKYEILEV 157
>gi|229175053|ref|ZP_04302571.1| Transcription elongation factor greA [Bacillus cereus MM3]
gi|228608421|gb|EEK65725.1| Transcription elongation factor greA [Bacillus cereus MM3]
Length = 161
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 95/152 (62%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 10 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E GD+++Y IVG EAD G +S S
Sbjct: 70 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPGGDEESYTIVGSAEADPFEGRISNDS 129
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 130 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 161
>gi|227530498|ref|ZP_03960547.1| elongation factor GreA [Lactobacillus vaginalis ATCC 49540]
gi|227349603|gb|EEJ39894.1| elongation factor GreA [Lactobacillus vaginalis ATCC 49540]
Length = 158
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 102/158 (64%), Gaps = 2/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T +G K++QEL + + RP +IK I AR+YGDLSEN+EY++AK+ Q
Sbjct: 1 MAEEKTFPMTLEGKQKLEQELEDLKMKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR++++EN++ AE+ID + D ++ G V++ E + ++YQIVG+ E+D +G
Sbjct: 61 VEGRISQIENMLQYAEIIDNDDVDKDEVSMGRKVTIKELPDEEPESYQIVGESESDPFNG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+A+ L+G ++G+ + + P G +IL V
Sbjct: 121 KISNESPMAKGLLGHKVGEEVEIEIPNGTMKVKILSVE 158
>gi|309794676|ref|ZP_07689098.1| transcription elongation factor GreB [Escherichia coli MS 145-7]
gi|308121726|gb|EFO58988.1| transcription elongation factor GreB [Escherichia coli MS 145-7]
Length = 170
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + + ++
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGETSWYVNAIEYV 168
>gi|65321747|ref|ZP_00394706.1| COG0782: Transcription elongation factor [Bacillus anthracis str.
A2012]
gi|228917013|ref|ZP_04080573.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228948093|ref|ZP_04110377.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229093450|ref|ZP_04224553.1| Transcription elongation factor greA [Bacillus cereus Rock3-42]
gi|228689921|gb|EEL43725.1| Transcription elongation factor greA [Bacillus cereus Rock3-42]
gi|228811451|gb|EEM57788.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228842620|gb|EEM87708.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 161
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/152 (40%), Positives = 95/152 (62%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + +R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 10 YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S S
Sbjct: 70 QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 129
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 130 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 161
>gi|330718836|ref|ZP_08313436.1| transcription elongation factor GreA [Leuconostoc fallax KCTC 3537]
Length = 159
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 3/159 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T +G ++QEL +RP I K I AR+YGDLSEN+EYQ+AK+ Q
Sbjct: 1 MSEEKTFPMTLEGKTSLEQELDNLIAVQRPEITKRIQIARSYGDLSENSEYQSAKDEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ + +I AE+ID++ + D ++ G TV+ E + + Y IVG EAD SG
Sbjct: 61 VEGRIQTIRKMIENAEIIDVADTASDEVSLGKTVTFKELPDEEAETYTIVGSVEADPLSG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+S SP+A ALI ++GD + V P G EIL V
Sbjct: 121 KISNESPMANALINHKVGDTVDVPLPNGINIKVEILSVK 159
>gi|49081530|gb|AAT50165.1| PA2859 [synthetic construct]
Length = 169
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGAARLRAELHELWHVRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ +R+ FGA V+L +++ G++ Y+IVG E D+++ +SI SP+
Sbjct: 75 RKRLENLKVVGERPADPNRVYFGAWVTLEDED-GEQARYRIVGPDELDLRNNQISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+GKEL + V P GEK + ++++ +
Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEIEY 164
>gi|91212881|ref|YP_542867.1| transcription elongation factor GreB [Escherichia coli UTI89]
gi|227883540|ref|ZP_04001345.1| transcription elongation factor GreB [Escherichia coli 83972]
gi|237703136|ref|ZP_04533617.1| transcription elongation factor and transcript cleavage
[Escherichia sp. 3_2_53FAA]
gi|300822797|ref|ZP_07102933.1| transcription elongation factor GreB [Escherichia coli MS 119-7]
gi|300898907|ref|ZP_07117206.1| transcription elongation factor GreB [Escherichia coli MS 198-1]
gi|300926905|ref|ZP_07142670.1| transcription elongation factor GreB [Escherichia coli MS 182-1]
gi|300937297|ref|ZP_07152138.1| transcription elongation factor GreB [Escherichia coli MS 21-1]
gi|300985400|ref|ZP_07177423.1| transcription elongation factor GreB [Escherichia coli MS 45-1]
gi|301019577|ref|ZP_07183737.1| transcription elongation factor GreB [Escherichia coli MS 69-1]
gi|301329711|ref|ZP_07222460.1| transcription elongation factor GreB [Escherichia coli MS 78-1]
gi|331649204|ref|ZP_08350290.1| transcription elongation factor GreB [Escherichia coli M605]
gi|331654983|ref|ZP_08355982.1| transcription elongation factor GreB [Escherichia coli M718]
gi|331674894|ref|ZP_08375651.1| transcription elongation factor GreB [Escherichia coli TA280]
gi|331679470|ref|ZP_08380140.1| transcription elongation factor GreB [Escherichia coli H591]
gi|12518036|gb|AAG58507.1|AE005563_1 transcription elongation factor and transcript cleavage
[Escherichia coli O157:H7 str. EDL933]
gi|26110436|gb|AAN82621.1|AE016768_39 Transcription elongation factor greB [Escherichia coli CFT073]
gi|13363722|dbj|BAB37671.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
Sakai]
gi|91074455|gb|ABE09336.1| transcription elongation factor and transcript cleavage
[Escherichia coli UTI89]
gi|209756508|gb|ACI76566.1| transcription elongation factor GreB [Escherichia coli]
gi|209756510|gb|ACI76567.1| transcription elongation factor GreB [Escherichia coli]
gi|209756512|gb|ACI76568.1| transcription elongation factor GreB [Escherichia coli]
gi|209756514|gb|ACI76569.1| transcription elongation factor GreB [Escherichia coli]
gi|209756516|gb|ACI76570.1| transcription elongation factor GreB [Escherichia coli]
gi|226902400|gb|EEH88659.1| transcription elongation factor and transcript cleavage
[Escherichia sp. 3_2_53FAA]
gi|227839419|gb|EEJ49885.1| transcription elongation factor GreB [Escherichia coli 83972]
gi|300357446|gb|EFJ73316.1| transcription elongation factor GreB [Escherichia coli MS 198-1]
gi|300399165|gb|EFJ82703.1| transcription elongation factor GreB [Escherichia coli MS 69-1]
gi|300408083|gb|EFJ91621.1| transcription elongation factor GreB [Escherichia coli MS 45-1]
gi|300417088|gb|EFK00399.1| transcription elongation factor GreB [Escherichia coli MS 182-1]
gi|300457620|gb|EFK21113.1| transcription elongation factor GreB [Escherichia coli MS 21-1]
gi|300524563|gb|EFK45632.1| transcription elongation factor GreB [Escherichia coli MS 119-7]
gi|300844223|gb|EFK71983.1| transcription elongation factor GreB [Escherichia coli MS 78-1]
gi|315291670|gb|EFU51026.1| transcription elongation factor GreB [Escherichia coli MS 153-1]
gi|315295897|gb|EFU55210.1| transcription elongation factor GreB [Escherichia coli MS 16-3]
gi|325498948|gb|EGC96807.1| transcription elongation factor GreB [Escherichia fergusonii
ECD227]
gi|331041702|gb|EGI13846.1| transcription elongation factor GreB [Escherichia coli M605]
gi|331046998|gb|EGI19076.1| transcription elongation factor GreB [Escherichia coli M718]
gi|331067803|gb|EGI39201.1| transcription elongation factor GreB [Escherichia coli TA280]
gi|331072642|gb|EGI43967.1| transcription elongation factor GreB [Escherichia coli H591]
Length = 170
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + + ++
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 168
>gi|315644113|ref|ZP_07897283.1| transcription elongation factor GreA [Paenibacillus vortex V453]
gi|315280488|gb|EFU43777.1| transcription elongation factor GreA [Paenibacillus vortex V453]
Length = 163
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 94/156 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++ +T +G+DK+Q+EL + +R + + I A +YGDL EN+EY +AK Q E
Sbjct: 6 MAEELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFME 65
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE + A ++D +S + G+ V L + +K YQ+VG EADV + V
Sbjct: 66 TRIIILEKTLNSARIVDSKQVSSTTVNVGSNVVLNDIEFAEKLEYQVVGPAEADVLNNKV 125
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +AL+GK +GD ++V+AP G YE+L++
Sbjct: 126 SYESPLGKALMGKAVGDQVNVDAPMGIVKYELLEIK 161
>gi|163846801|ref|YP_001634845.1| transcription elongation factor GreA [Chloroflexus aurantiacus
J-10-fl]
gi|222524620|ref|YP_002569091.1| transcription elongation factor GreA [Chloroflexus sp. Y-400-fl]
gi|229485761|sp|A9WK05|GREA_CHLAA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799554|sp|B9LBX1|GREA_CHLSY RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|163668090|gb|ABY34456.1| transcription elongation factor GreA [Chloroflexus aurantiacus
J-10-fl]
gi|222448499|gb|ACM52765.1| transcription elongation factor GreA [Chloroflexus sp. Y-400-fl]
Length = 157
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T +G +++ EL + ER +I + I+ A+ GD+SE+ EY+ AK+ Q L
Sbjct: 1 MTEKPTYLTREGRARLEAELEYLTTVERKQIAERIAAAKELGDISESGEYEDAKKAQALL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ EL+++++RAEVID S + G++V++ ++ G ++ + IVG EA+ + G
Sbjct: 61 EGRIRELKHLLSRAEVIDEDQASNGEVRVGSSVTVRFEDDGTEETWTIVGSAEANPRQGR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL+GK + ++V+ P G IL+V
Sbjct: 121 ISNESPLGAALLGKRARNKVTVHTPSGVMKLTILKVR 157
>gi|90412476|ref|ZP_01220479.1| transcription elongation factor GreA [Photobacterium profundum
3TCK]
gi|90326513|gb|EAS42919.1| transcription elongation factor GreA [Photobacterium profundum
3TCK]
Length = 157
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 108/158 (68%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +++EL + RP I KAI EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGEQTLREELEVLLK-RRPIISKAIGEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ ++VID++ M + ++ FG TV L++ N+ D+ Y IVGD EAD++ L+
Sbjct: 60 QIRDIEYKLSVSQVIDVTKMENTGKVIFGTTVKLIDINTDDEVMYCIVGDDEADIKKNLI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +S+ PGG K +EI QV +I
Sbjct: 120 SVNSPIARGLIGKLEGDEVSIFTPGGVKEFEIEQVQYI 157
>gi|160932785|ref|ZP_02080174.1| hypothetical protein CLOLEP_01626 [Clostridium leptum DSM 753]
gi|156867859|gb|EDO61231.1| hypothetical protein CLOLEP_01626 [Clostridium leptum DSM 753]
Length = 158
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 90/155 (58%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ +T +G ++QEL + + E R I + I A ++GDLSEN+EY AK Q + E
Sbjct: 3 AKQVLLTDEGLHNLEQELEFLKTERRKEIAEKIKVALSFGDLSENSEYDEAKNDQAMVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+A++E+++ ++ID ++ + I G+ V + + + YQIVG EAD +G +S
Sbjct: 63 RIADIESMLKNVKIIDQDELTTELIHIGSKVQVKDVEFDEVCTYQIVGSSEADPSNGRIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ + L+G ++G+ + + P G YEIL +
Sbjct: 123 DESPVGKGLLGHKVGETVEIETPAGVMQYEILGIS 157
>gi|153952824|ref|YP_001393589.1| transcription elongation factor GreA [Clostridium kluyveri DSM 555]
gi|219853489|ref|YP_002470611.1| hypothetical protein CKR_0146 [Clostridium kluyveri NBRC 12016]
gi|229485766|sp|A5N4L0|GREA_CLOK5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799556|sp|B9DY72|GREA_CLOK1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|146345705|gb|EDK32241.1| GreA1 [Clostridium kluyveri DSM 555]
gi|219567213|dbj|BAH05197.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 159
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 89/154 (57%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K +T +G K++ EL + + +R I + I A ++GDLSEN+EY +AK Q EGR
Sbjct: 5 KKYVMTYEGIKKLENELEYLKTVKRKEITEKIKVALSFGDLSENSEYDSAKNEQAFVEGR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +LEN++ A ++D + D + G+ V + + + ++ Y IVG EAD + +S
Sbjct: 65 IVQLENMLKNASMVDEDEVPLDIVGIGSIVKVKDYDLDEEVEYLIVGSAEADPINNKISN 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ + L+GK+ GD+I + P G Y+IL +
Sbjct: 125 ESPVGKGLVGKKPGDVIEIQVPDGVSKYKILNIR 158
>gi|322807846|emb|CBZ05421.1| transcription elongation factor GreA [Clostridium botulinum H04402
065]
Length = 160
Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 91/154 (59%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EG
Sbjct: 4 AKKYVMTYEGVKKLEEELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S
Sbjct: 64 RIIQLENMLKNASIVDENEVPKDIVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ LIGK++GDII V P G YEIL+V
Sbjct: 124 NESPVGHGLIGKKVGDIIEVTVPDGISKYEILEV 157
>gi|261403947|ref|YP_003240188.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10]
gi|329925508|ref|ZP_08280382.1| transcription elongation factor GreA [Paenibacillus sp. HGF5]
gi|261280410|gb|ACX62381.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10]
gi|328939791|gb|EGG36131.1| transcription elongation factor GreA [Paenibacillus sp. HGF5]
Length = 158
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T G K++ EL + +R + + I A YGD+SEN+EY+ AK Q
Sbjct: 1 MSDKEVILTQDGLKKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I+ ++ D + G TV + + GD Y IVG E+D +
Sbjct: 61 EGRIITLEKMLRNARIINNDDINTDVVGVGNTVIVEDLEFGDTMEYTIVGTAESDPLNNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A+IGK+ G ++ VN P G Y+I+ +
Sbjct: 121 ISNESPVGKAIIGKQKGSVVDVNVPAGVIQYKIVDIK 157
>gi|167854513|ref|ZP_02477294.1| transcription elongation factor GreB [Haemophilus parasuis 29755]
gi|167854268|gb|EDS25501.1| transcription elongation factor GreB [Haemophilus parasuis 29755]
Length = 162
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + QEL++ +EERP++ +A+SEA A GD SENAEY K +
Sbjct: 1 MAKSNYITRSGWQALDQELKYLWKEERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V L + G+ K Y+IVG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYHPSQEGKVFFGAWVELENEE-GEIKQYRIVGCDEFDPAKQWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D I V P G+ I ++ +
Sbjct: 120 SIDSPVARALIGKQIDDEIQVETPAGKVMLYINKIWY 156
>gi|195940962|ref|ZP_03086344.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
EC4024]
Length = 157
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V + + G ++IVG E + +SI SP+
Sbjct: 66 TKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGQTLRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ V P GE ++ + ++ ++
Sbjct: 125 ARALLKKEVGDLAVVQTPAGEASWYVNEIEYV 156
>gi|319795595|ref|YP_004157235.1| transcription elongation factor greb [Variovorax paradoxus EPS]
gi|315598058|gb|ADU39124.1| transcription elongation factor GreB [Variovorax paradoxus EPS]
Length = 192
Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 85/155 (54%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+ +++ EL EERP++++A+ A GD SEN +Y K+ + R+
Sbjct: 30 KNYITPEGYARLRDELLQLMDEERPKVVEAVHWAAKNGDRSENGDYLYGKKRLREIDRRI 89
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV D S G D+I FGATV V++ D++ I+G EAD VS
Sbjct: 90 RFLTKRLEIAEVTDPSVHHGSDQIFFGATVRYVDETGDDERTITILGIDEADSAQSQVSW 149
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ GD++ + PGG EIL V +
Sbjct: 150 ISPIARALLKSREGDVVKLVTPGGAHEVEILSVSY 184
>gi|312128202|ref|YP_003993076.1| grea/greb family elongation factor [Caldicellulosiruptor
hydrothermalis 108]
gi|312793713|ref|YP_004026636.1| transcription elongation factor grea [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312877911|ref|ZP_07737855.1| transcription elongation factor GreA [Caldicellulosiruptor
lactoaceticus 6A]
gi|311778221|gb|ADQ07707.1| GreA/GreB family elongation factor [Caldicellulosiruptor
hydrothermalis 108]
gi|311795303|gb|EFR11688.1| transcription elongation factor GreA [Caldicellulosiruptor
lactoaceticus 6A]
gi|312180853|gb|ADQ41023.1| transcription elongation factor GreA [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 162
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 56/153 (36%), Positives = 93/153 (60%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+
Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAALEERI 68
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A LE +I A++ID +S D + G V + ++GD Y IVG +EAD + +S
Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDVFEYSIVGSKEADPLNFKISDE 128
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+GK++GD++ V+ P G+ Y+IL++
Sbjct: 129 SPVGKALMGKKVGDVVEVSVPAGKFRYKILEIS 161
>gi|15598055|ref|NP_251549.1| transcription elongation factor GreB [Pseudomonas aeruginosa PAO1]
gi|107102408|ref|ZP_01366326.1| hypothetical protein PaerPA_01003470 [Pseudomonas aeruginosa PACS2]
gi|116050862|ref|YP_790315.1| transcription elongation factor GreB [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218890942|ref|YP_002439808.1| transcription elongation factor GreB [Pseudomonas aeruginosa
LESB58]
gi|254235846|ref|ZP_04929169.1| transcription elongation factor GreB [Pseudomonas aeruginosa C3719]
gi|296388654|ref|ZP_06878129.1| transcription elongation factor GreB [Pseudomonas aeruginosa PAb1]
gi|313108005|ref|ZP_07794172.1| transcription elongation factor GreB [Pseudomonas aeruginosa 39016]
gi|25453010|sp|Q9HZY5|GREB_PSEAE RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|9948947|gb|AAG06247.1|AE004712_7 transcription elongation factor GreB [Pseudomonas aeruginosa PAO1]
gi|115586083|gb|ABJ12098.1| transcription elongation factor GreB [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126167777|gb|EAZ53288.1| transcription elongation factor GreB [Pseudomonas aeruginosa C3719]
gi|218771167|emb|CAW26932.1| transcription elongation factor GreB [Pseudomonas aeruginosa
LESB58]
gi|310880674|gb|EFQ39268.1| transcription elongation factor GreB [Pseudomonas aeruginosa 39016]
Length = 168
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGAARLRAELHELWHVRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ +R+ FGA V+L +++ G++ Y+IVG E D+++ +SI SP+
Sbjct: 75 RKRLENLKVVGERPADPNRVYFGAWVTLEDED-GEQARYRIVGPDELDLRNNQISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+GKEL + V P GEK + ++++ +
Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEIEY 164
>gi|15613839|ref|NP_242142.1| transcription elongation factor GreA [Bacillus halodurans C-125]
gi|20138372|sp|Q9KDD7|GREA_BACHD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|10173892|dbj|BAB04995.1| transcriptional elongation factor [Bacillus halodurans C-125]
Length = 158
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 2/158 (1%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + K +T +G K+++EL + + E R +++ I AR++GDLSEN+EY +AKE Q
Sbjct: 1 MAEEKKHYMTLEGKKKLEEELEYLKTERRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR++++E +I AE+I+ S + ++ G TV VE G+++ Y IVG E+D G
Sbjct: 61 VEGRISQIEKMIRNAEIIEESEGDANVVSLGKTVKFVEIPDGEEEEYTIVGSAESDPFEG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+A++L+G + D++ VN PGGE +IL++
Sbjct: 121 KISNDSPMAQSLLGHTIDDVVIVNTPGGEMEVKILEIR 158
>gi|71733247|ref|YP_276321.1| transcription elongation factor GreA [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|237798553|ref|ZP_04587014.1| transcription elongation factor GreA [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|257482271|ref|ZP_05636312.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289624592|ref|ZP_06457546.1| transcription elongation factor GreA [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289646951|ref|ZP_06478294.1| transcription elongation factor GreA [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298488446|ref|ZP_07006477.1| Transcription elongation factor GreA [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|71553800|gb|AAZ33011.1| transcription elongation factor GreA [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298157071|gb|EFH98160.1| Transcription elongation factor GreA [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320322538|gb|EFW78631.1| transcription elongation factor GreA [Pseudomonas syringae pv.
glycinea str. B076]
gi|320329993|gb|EFW85980.1| transcription elongation factor GreA [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330868236|gb|EGH02945.1| transcription elongation factor GreA [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330875233|gb|EGH09382.1| transcription elongation factor GreA [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330888668|gb|EGH21329.1| transcription elongation factor GreA [Pseudomonas syringae pv. mori
str. 301020]
gi|330963965|gb|EGH64225.1| transcription elongation factor GreA [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330987045|gb|EGH85148.1| transcription elongation factor GreA [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011488|gb|EGH91544.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|331021406|gb|EGI01463.1| transcription elongation factor GreA [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 158
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E
Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A VID++T+ ++ FG TV + + + YQIVG+ EAD++ G +
Sbjct: 61 RIRDIEGRMQNAVVIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARALI KE GD++ V P G YEI++V I
Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158
>gi|238921494|ref|YP_002935009.1| transcription elongation factor GreB [Edwardsiella ictaluri 93-146]
gi|238871063|gb|ACR70774.1| transcription elongation factor GreB [Edwardsiella ictaluri 93-146]
Length = 158
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYEKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ +++D + ++ FGA V + GD K ++IVG E ++ +SI SP+
Sbjct: 66 RKCMSILKIVDYAPQQNGKVFFGAWVEVEN-ERGDIKRFRIVGYDEIFGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD +V P G+ + + + ++
Sbjct: 125 ARALLKKEVGDAATVATPQGDAEWYVNAINYV 156
>gi|325280567|ref|YP_004253109.1| transcription elongation factor GreA [Odoribacter splanchnicus DSM
20712]
gi|324312376|gb|ADY32929.1| transcription elongation factor GreA [Odoribacter splanchnicus DSM
20712]
Length = 158
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ VT +G K+Q+EL Q ERP+I KAI EA GD+SENAEY AAK+ Q L
Sbjct: 1 MSNKVSYVTKEGLKKLQEELERLQNVERPKISKAIGEAIEKGDISENAEYDAAKDAQGLL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E ++A+L++ I VID S + ++ V++ +G Y +V + EA+ + G
Sbjct: 61 EAKIAQLKDTIATCRVIDESQIDTSKVQMLNKVTIKNTKTGATMTYTLVSETEANFKEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+SI +PIA+AL+GK+LGD + V P GE +EI+ +
Sbjct: 121 LSIHTPIAQALVGKKLGDKVMVKVPAGEMEFEIMDIS 157
>gi|268316677|ref|YP_003290396.1| transcription elongation factor GreA [Rhodothermus marinus DSM
4252]
gi|262334211|gb|ACY48008.1| transcription elongation factor GreA [Rhodothermus marinus DSM
4252]
Length = 159
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 54/152 (35%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T + K+++EL + +ER RI KAI+EAR +GDLSENAEY AAKE Q E R+A
Sbjct: 7 VYLTREALQKLKEELHELKTKERARIAKAIAEARGHGDLSENAEYDAAKEAQGRLEARIA 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
++E I A ++D + + + + V + +G ++ + +V QE ++ G +S++S
Sbjct: 67 QIEQTIANARIVDENKIDTSKAYIFSKVRVKNLQTGAEQVFTLVSPQEVNLNEGKISVNS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PI + L+G+ +GD++ V P G+ +IL++
Sbjct: 127 PIGKGLLGRSVGDVVEVKVPAGKVKLQILEIS 158
>gi|325285915|ref|YP_004261705.1| transcription elongation factor GreA [Cellulophaga lytica DSM 7489]
gi|324321369|gb|ADY28834.1| transcription elongation factor GreA [Cellulophaga lytica DSM 7489]
Length = 158
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 98/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MSNVSYYTAEGLKKLKDELNQLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++++LE I+ A +ID S + ++ +TV L +++G + Y +V + EAD+++G +
Sbjct: 61 LKISKLEEIVAGARIIDESQLDTSKVLVLSTVKLKNQSNGMEMKYTLVAESEADLKTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S++SPI + L+GK +GD + P G+ IL++
Sbjct: 121 SVNSPIGKGLLGKSVGDEAEIAVPNGKIKLTILEIT 156
>gi|330895316|gb|EGH27654.1| transcription elongation factor GreA [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 158
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E
Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G +
Sbjct: 61 RIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARALI KE GD++ V P G YEI++V I
Sbjct: 121 SVGSPIARALIAKEEGDVVFVKTPSGVIEYEIVEVRHI 158
>gi|83644091|ref|YP_432526.1| transcription elongation factor [Hahella chejuensis KCTC 2396]
gi|83632134|gb|ABC28101.1| Transcription elongation factor [Hahella chejuensis KCTC 2396]
Length = 158
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T G +++EL + +RPR+I AI+EAR +GDL ENAEY AA+E Q+ EG
Sbjct: 1 MSKIPMTKAGEQALREELNRLKTVDRPRVITAIAEAREHGDLKENAEYHAAREQQSFIEG 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E+ ++ +++ID++++ + ++ FG TV+++ ++ D +YQIVGD EAD++ G +
Sbjct: 61 RIAEIESKLSMSQIIDLTSIENTGKVIFGVTVNIINLDTDDVSSYQIVGDDEADIKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIARALIGK +GD++ V P G YEI V +
Sbjct: 121 SVSSPIARALIGKTVGDVVVVQVPSGMVEYEIDGVQHL 158
>gi|311696372|gb|ADP99245.1| transcription elongation factor GreB [marine bacterium HP15]
Length = 171
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 54/152 (35%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G ++ EL++ + +RP + +A+ EA A GD SENAEY K+ + R+
Sbjct: 14 YITPEGERALRDELQYLWKVKRPEVTQAVREAAALGDRSENAEYIYGKKQLREIDRRVRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V+D D++ FGA V++ ++ GD++ Y++VG E D+ G +SI+SP
Sbjct: 74 LGKRLEELTVVDRLPDDRDKVFFGAWVTVEDEE-GDEQTYRLVGADEFDLNKGYLSINSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALIGK L D +SV P G K+ ++ + +
Sbjct: 133 LARALIGKRLDDEVSVRTPEGWKSVFVVGIRY 164
>gi|304405775|ref|ZP_07387433.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus
YK9]
gi|304345018|gb|EFM10854.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus
YK9]
Length = 158
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T G K+++EL + +R + + I A YGD+SEN+EY+ AK Q
Sbjct: 1 MGDKEVILTQDGLRKLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I+ + + ++ G+TVS+ + GD +Y IVG E+D +
Sbjct: 61 EGRIITLEKMLRNARIINNDEIDTETVSIGSTVSVEDLEFGDTVDYTIVGTAESDPLNNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++GK++G + V+ P G Y+IL++
Sbjct: 121 ISNESPVGKAILGKKVGATVEVSVPAGVIQYKILEIK 157
>gi|125975378|ref|YP_001039288.1| transcription elongation factor GreA [Clostridium thermocellum ATCC
27405]
gi|256005475|ref|ZP_05430437.1| transcription elongation factor GreA [Clostridium thermocellum DSM
2360]
gi|281419339|ref|ZP_06250354.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20]
gi|166200659|sp|A3DJG6|GREA_CLOTH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|125715603|gb|ABN54095.1| transcription elongation factor GreA [Clostridium thermocellum ATCC
27405]
gi|255990530|gb|EEU00650.1| transcription elongation factor GreA [Clostridium thermocellum DSM
2360]
gi|281406959|gb|EFB37222.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20]
gi|316939493|gb|ADU73527.1| transcription elongation factor GreA [Clostridium thermocellum DSM
1313]
Length = 159
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 93/154 (60%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++ +T +G K++QEL + +R + + I +A ++GD+SEN+EY AK Q EGR
Sbjct: 5 KEVVLTYEGLQKLEQELENLKTVKRREVAERIKQALSFGDISENSEYDEAKNEQAYIEGR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +LEN++ A+VID + D ++ G+ V +++ ++ Y IVG EAD +S
Sbjct: 65 IFQLENMLKNAKVIDEEDIQTDVVSIGSKVKVLDMEFDEEVEYYIVGSTEADPSQYKISN 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +ALIG ++GDI+ V P G ++IL++
Sbjct: 125 ESPVGKALIGGKIGDIVEVTVPDGVIKFKILEIR 158
>gi|300173857|ref|YP_003773023.1| transcription elongation factor greA [Leuconostoc gasicomitatum LMG
18811]
gi|299888236|emb|CBL92204.1| Transcription elongation factor greA [Leuconostoc gasicomitatum LMG
18811]
Length = 160
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 66/159 (41%), Positives = 101/159 (63%), Gaps = 3/159 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T++G +K+Q EL +RP I K I AR+YGDLSEN+EYQ+AK+ Q
Sbjct: 1 MSEEKVFPMTAEGRNKLQAELEDLITNQRPEITKRIQIARSYGDLSENSEYQSAKDEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ L+ +I AE+ID + + D ++ G TV+ E + D + Y IVG E+D +G
Sbjct: 61 VEGRIQTLKKMIENAEIIDPNATAADEVSLGKTVTFKELPNEDAETYAIVGSTESDPVAG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+S S +A AL+GK++GD ++V P G+ + EIL+V
Sbjct: 121 KISNESAMAVALLGKKVGDKVNVPLPSGDNISVEILKVE 159
>gi|33152720|ref|NP_874073.1| transcription elongation factor GreA [Haemophilus ducreyi 35000HP]
gi|71152089|sp|Q7VL00|GREA_HAEDU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|33148944|gb|AAP96462.1| transcription elongation factor [Haemophilus ducreyi 35000HP]
Length = 158
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 69/157 (43%), Positives = 113/157 (71%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T +G + +++EL + + RP+II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MKQIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E + A+VID++ M+ + ++ FGATV LV ++ ++ Y+IVGD EA+++ GL+
Sbjct: 61 RIQEIEGKLGNAQVIDVAKMTNNGKVIFGATVGLVNIDTDEEVTYRIVGDDEANIKEGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIAR L+GK + D +S+ PGG+ ++I+ V +
Sbjct: 121 SVNSPIARGLVGKSVDDSVSIITPGGKVEFDIISVEY 157
>gi|293606024|ref|ZP_06688389.1| transcription elongation factor GreB [Achromobacter piechaudii ATCC
43553]
gi|292815479|gb|EFF74595.1| transcription elongation factor GreB [Achromobacter piechaudii ATCC
43553]
Length = 183
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+++++ EL ERP +++ +S A + GD SEN +Y K+ + RM
Sbjct: 29 KNYMTPEGYERLRAELTHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRM 88
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D + D++ FGATV + +G++ IVG EA+ +G +S
Sbjct: 89 RFLTKRLDIAEVVDPALQPNRDQVFFGATVRYSD-KAGEEHTVTIVGVDEAEPLAGKISW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARALI GD + + PGG + +IL+V +
Sbjct: 148 ISPVARALIKAREGDTVVLRTPGGIEELDILEVRY 182
>gi|56415418|ref|YP_152493.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197364348|ref|YP_002143985.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|56129675|gb|AAV79181.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197095825|emb|CAR61398.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
Length = 157
Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ ++QEL + EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYETLKQELNYLWHEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V + + GD ++IVG E + +SI SP+
Sbjct: 66 TKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGDTLKFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ VN P GE + + + ++
Sbjct: 125 ARALLKKEVGDLAVVNTPVGEANWYVNAIEYV 156
>gi|327402704|ref|YP_004343542.1| transcription elongation factor GreA [Fluviicola taffensis DSM
16823]
gi|327318212|gb|AEA42704.1| transcription elongation factor GreA [Fluviicola taffensis DSM
16823]
Length = 157
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 96/156 (61%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D T +G K++ EL + +RPRI + I+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MSDFAYYTEEGLKKLKDELHEMKTVQRPRISEQIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++++++ ++++A +ID S M ++ + V + N+G + Y IV + EAD++ +
Sbjct: 61 MKISKMDALLSKARIIDNSIMDNSKVLILSCVKIKNVNNGMEMEYTIVAESEADLKLKKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SI SPI + L+GK++GD+ V P G +E++ +
Sbjct: 121 SIDSPIGKGLLGKKVGDVADVQTPNGIVKFEVMDIT 156
>gi|289676014|ref|ZP_06496904.1| transcription elongation factor GreA [Pseudomonas syringae pv.
syringae FF5]
gi|330937936|gb|EGH41723.1| transcription elongation factor GreA [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330981080|gb|EGH79183.1| transcription elongation factor GreA [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 158
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E
Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A +ID++T+ ++ FG TV + + + YQIVG+ EAD++ G +
Sbjct: 61 RIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARALI KE GD++ V P G YEI++V I
Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIVEVRHI 158
>gi|42523662|ref|NP_969042.1| transcription elongation factor GreA [Bdellovibrio bacteriovorus
HD100]
gi|39575869|emb|CAE80035.1| transcription elongation factor GreA [Bdellovibrio bacteriovorus
HD100]
Length = 162
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 77/155 (49%), Positives = 108/155 (69%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
DK+P+T +G + EL+ EERP +I AI EARA GD+SENAEY+AAKE Q + EGR
Sbjct: 7 DKLPMTIRGKALLDAELKKLLLEERPSVILAIEEARAQGDISENAEYEAAKERQAMIEGR 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+AE++ + A+VID + + DRI FGA V +V+ S + YQIVG EADV+ G++SI
Sbjct: 67 IAEIQGKLAGADVIDTAQIKADRIVFGAFVKIVDTESEETFQYQIVGVDEADVKKGMISI 126
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARALIGK+ D ++V +P G+K +EI+ +
Sbjct: 127 LSPLARALIGKKDSDTVTVQSPKGDKEFEIISFEY 161
>gi|199597193|ref|ZP_03210625.1| Transcription elongation factor [Lactobacillus rhamnosus HN001]
gi|229552515|ref|ZP_04441240.1| elongation factor GreA [Lactobacillus rhamnosus LMS2-1]
gi|258508708|ref|YP_003171459.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG]
gi|258539888|ref|YP_003174387.1| transcription elongation factor GreA [Lactobacillus rhamnosus Lc
705]
gi|199591997|gb|EDZ00072.1| Transcription elongation factor [Lactobacillus rhamnosus HN001]
gi|229314067|gb|EEN80040.1| elongation factor GreA [Lactobacillus rhamnosus LMS2-1]
gi|257148635|emb|CAR87608.1| Transcription elongation factor greA [Lactobacillus rhamnosus GG]
gi|257151564|emb|CAR90536.1| Transcription elongation factor greA [Lactobacillus rhamnosus Lc
705]
gi|259650015|dbj|BAI42177.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG]
Length = 156
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 105/157 (66%), Gaps = 3/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK P+T++G K++ EL + ++RP +I+ I AR +GDLSEN+EY+AAK+ Q+
Sbjct: 1 MADKSYPMTAEGKKKLENELEELKTKKRPEVIERIKVARGFGDLSENSEYEAAKDEQSTL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ++ ++ AE+ID ++ + ++ G V+ + GD++ Y+IVG EAD +G
Sbjct: 61 ENRIVTIQTMLRYAEIIDAKAVAKNEVSIGKKVTF--EEDGDEETYEIVGAAEADAFNGK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ LIG+++GD +++N PGGE T +I +V
Sbjct: 119 ISNESPIAQGLIGRKVGDQVTINTPGGEMTVKITKVE 155
>gi|154149289|ref|YP_001406861.1| transcription elongation factor GreA [Campylobacter hominis ATCC
BAA-381]
gi|166200653|sp|A7I2X0|GREA_CAMHC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|153805298|gb|ABS52305.1| transcription elongation factor GreA [Campylobacter hominis ATCC
BAA-381]
Length = 162
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 64/156 (41%), Positives = 104/156 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ P+T G++KI EL+ + +RP I++ I AR++GDL EN+EY AA+E Q E
Sbjct: 1 MQSEPMTLYGYEKITAELKDLKMVQRPNIVRDIDIARSHGDLKENSEYHAAREKQAFIEN 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AE+ +I++RA+VID ST D++ FG+TV++++ + +K Y IVG E+D+ G ++
Sbjct: 61 RIAEISDIVSRAKVIDPSTYEHDKVKFGSTVTIMDVETELEKTYVIVGISESDISKGYIN 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I++P+AR L+GK GD + +N P G EI+ V +
Sbjct: 121 INTPLARQLLGKVEGDDVILNLPNGVSEIEIVSVEY 156
>gi|257459030|ref|ZP_05624149.1| transcription elongation factor GreA [Campylobacter gracilis
RM3268]
gi|257443415|gb|EEV18539.1| transcription elongation factor GreA [Campylobacter gracilis
RM3268]
Length = 163
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 65/156 (41%), Positives = 100/156 (64%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ P+T G++KI EL+ Q + P I++ I AR +GDL ENAEY AA+E Q
Sbjct: 1 MTTEPMTLYGYEKITSELKELQSVKLPHIVQQIDIARGHGDLKENAEYHAAREEQAFLLS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL +II+R+++ID ST DR+ FG+TV+ ++ + ++ Y IVG EAD+ L++
Sbjct: 61 RIAELSDIISRSKIIDPSTYEHDRVKFGSTVTFMDVETEREETYVIVGLSEADISRKLIN 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I++P+AR L+GK GD + + P G + EIL V +
Sbjct: 121 INTPLARQLLGKAEGDEVVLQLPSGTRDVEILSVEY 156
>gi|78777731|ref|YP_394046.1| transcription elongation factor GreA [Sulfurimonas denitrificans
DSM 1251]
gi|78498271|gb|ABB44811.1| GreA/GreB family elongation factor [Sulfurimonas denitrificans DSM
1251]
Length = 165
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 2 VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+ KI P+T G++K+Q E++ ++ +RPR++K I EA +GDL ENAEY AAKE Q + +
Sbjct: 1 MQKIEPMTLFGYNKLQAEVKNIKEVKRPRVVKDIEEALEHGDLKENAEYHAAKEQQKILD 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AEL +I ++++D + + +++FG+TV + + S + Y IVG E++ GL+
Sbjct: 61 NRLAELAELIGSSKIVDPTELEHTKVSFGSTVVVCDVISEIEYTYTIVGGCESNPDIGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S +SP+A+ L+G+E GD + V P G+K +EI++V +
Sbjct: 121 SFNSPLAKQLLGREEGDDVKVQLPNGQKEFEIIEVTY 157
>gi|187777498|ref|ZP_02993971.1| hypothetical protein CLOSPO_01073 [Clostridium sporogenes ATCC
15579]
gi|187774426|gb|EDU38228.1| hypothetical protein CLOSPO_01073 [Clostridium sporogenes ATCC
15579]
Length = 160
Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 91/154 (59%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EG
Sbjct: 4 AKKYVMTYEGVKKLEEELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFAEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S
Sbjct: 64 RIIQLENMLKNASIVDENEVPKDVVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ LIGK++GDII V P G YEIL+V
Sbjct: 124 NESPVGNGLIGKKVGDIIEVTVPDGVSKYEILEV 157
>gi|89076063|ref|ZP_01162423.1| transcription elongation factor GreB [Photobacterium sp. SKA34]
gi|89048215|gb|EAR53797.1| transcription elongation factor GreB [Photobacterium sp. SKA34]
Length = 160
Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ VT +G++K+++EL + +E+RP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MRTNLVTREGYNKLKKELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +VID S +I FGA V + +G+ K ++IVG E ++ +S
Sbjct: 61 RVRFLRKRLDVLKVIDYSPQQDGKIFFGAWVEIEN-EAGETKTFRIVGPDEIYGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE+ D I V P G+K + I ++ +
Sbjct: 120 IDSPMARALLSKEVDDDIVVTTPLGKKEWFINEIRY 155
>gi|194336836|ref|YP_002018630.1| transcription elongation factor GreA [Pelodictyon
phaeoclathratiforme BU-1]
gi|238693368|sp|B4SBF9|GREA_PELPB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|194309313|gb|ACF44013.1| transcription elongation factor GreA [Pelodictyon
phaeoclathratiforme BU-1]
Length = 159
Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 101/156 (64%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +TS G++++++EL + R +++ I+EARA+GDLSENAEY AA+E Q+ E
Sbjct: 1 MTDRIYLTSDGYNRLKEELYVLVHQTRREVLEKIAEARAHGDLSENAEYDAAREEQSHTE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS-GDKKNYQIVGDQEADVQSGL 119
R+A+LEN + A ++D + D++ +V L ++ + Y +V +EAD SG
Sbjct: 61 ARIADLENKLASATILDPKQIKTDKVYILTSVKLKNLDTPDEIIEYTLVSSEEADTDSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S+ SP+ RALIGK +G+ + + P GE YEIL++
Sbjct: 121 ISVRSPVGRALIGKAVGEKVQIVVPKGELHYEILEI 156
>gi|229592647|ref|YP_002874766.1| transcription elongation factor GreA [Pseudomonas fluorescens
SBW25]
gi|229364513|emb|CAY52367.1| transcription elongation factor, cleaves 3' nucleotide of paused
mRNA [Pseudomonas fluorescens SBW25]
Length = 158
Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 97/158 (61%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++E + RP++ + I AR GDL ENAEY AA+E Q + E
Sbjct: 1 MIKYPMTVQGAKALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A +ID++T+ ++ FG TV + + + Y IVG+ EAD + G +
Sbjct: 61 RIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYHIVGEDEADFKLGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SP+ARALI KE GD+++V PGG YEI++V +
Sbjct: 121 SVGSPLARALIAKEEGDVVAVKTPGGVIEYEIVEVRHV 158
>gi|315644403|ref|ZP_07897543.1| transcription elongation factor GreA [Paenibacillus vortex V453]
gi|315280280|gb|EFU43572.1| transcription elongation factor GreA [Paenibacillus vortex V453]
Length = 158
Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T G K++ EL + +R + + I A YGD+SEN+EY+ AK Q
Sbjct: 1 MSDKEVILTQDGLKKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I+ ++ D I G TV + + GD Y IVG E+D +
Sbjct: 61 EGRIITLEKMLRNARIINNDDINTDIIGVGNTVLVEDLEFGDTMEYTIVGSAESDPLNNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A+IGK+ G ++ VN P G Y+I+ +
Sbjct: 121 ISNESPVGKAIIGKQKGSVVDVNVPAGVIQYKIVDIK 157
>gi|325106003|ref|YP_004275657.1| transcription elongation factor GreA [Pedobacter saltans DSM 12145]
gi|324974851|gb|ADY53835.1| transcription elongation factor GreA [Pedobacter saltans DSM 12145]
Length = 157
Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats.
Identities = 63/156 (40%), Positives = 98/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + T +G + ++QEL++ + E R +I AI+EAR GDLSENAEY AAKE Q L+E
Sbjct: 1 MTEIAYFTKEGLENLKQELQYLKTEGRAKIANAIAEARDKGDLSENAEYDAAKEAQALHE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LEN + A +ID S + ++ + V + +G YQ+V + EAD++SG +
Sbjct: 61 TKIAKLENTLANARLIDESKIDTTKVLALSIVKIKNVKNGATMTYQLVAENEADLKSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SPIA+ L+GK +GD + P G+ +EIL +
Sbjct: 121 SVKSPIAQGLLGKSVGDKAEITVPAGKMEFEILDIS 156
>gi|324009407|gb|EGB78626.1| transcription elongation factor GreB [Escherichia coli MS 57-2]
Length = 170
Score = 156 bits (396), Expect = 6e-37, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P G ++ + + ++
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGGASWYVNAIEYV 168
>gi|301302284|ref|ZP_07208416.1| transcription elongation factor GreB [Escherichia coli MS 124-1]
gi|300842447|gb|EFK70207.1| transcription elongation factor GreB [Escherichia coli MS 124-1]
gi|315255996|gb|EFU35964.1| transcription elongation factor GreB [Escherichia coli MS 85-1]
Length = 170
Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFDRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + + ++
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 168
>gi|297538751|ref|YP_003674520.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
gi|297258098|gb|ADI29943.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
Length = 168
Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K +T +G I+ E + ERP ++K +S A GD SEN +Y K + R
Sbjct: 9 EKNYITPEGHAAIEAEFTELLKVERPALVKVVSWAAGNGDRSENGDYIYGKRRLRQIDSR 68
Query: 63 MAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ L + A ++D + G +++ FGA V+L + Y+IVG E G +S
Sbjct: 69 LRFLMQRMDLAVIVDPAAQQGLEKVFFGAWVTLFSLKDDTEHTYRIVGKDELQPSLGYIS 128
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+GK++GDI+ V+ P GE+ YEI+ V +
Sbjct: 129 WVSPLARALLGKQIGDIVKVSVPAGEEEYEIIDVQY 164
>gi|254362550|ref|ZP_04978651.1| transcription elongation factor [Mannheimia haemolytica PHL213]
gi|261493833|ref|ZP_05990347.1| transcription elongation factor [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261495058|ref|ZP_05991525.1| transcription elongation factor [Mannheimia haemolytica serotype A2
str. OVINE]
gi|153094151|gb|EDN75047.1| transcription elongation factor [Mannheimia haemolytica PHL213]
gi|261309300|gb|EEY10536.1| transcription elongation factor [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261310536|gb|EEY11725.1| transcription elongation factor [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 160
Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRSGWQALDQELKFLWREERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V L + G+ K Y+IVG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEE-GEAKQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D I V P G+ I ++ +
Sbjct: 120 SIDSPVARALIGKQVDDEIRVETPLGKVLLYINKIWY 156
>gi|56963364|ref|YP_175095.1| transcription elongation factor GreA [Bacillus clausii KSM-K16]
gi|81366412|sp|Q5WHM1|GREA_BACSK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|56909607|dbj|BAD64134.1| transcriptional elongation factor GreA [Bacillus clausii KSM-K16]
Length = 158
Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 101/158 (63%), Gaps = 2/158 (1%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + K +T++G K+++EL + R +++ I AR++GDLSEN+EY +AKE Q
Sbjct: 1 MAEEKKHYMTAEGKKKLEEELHYLITTRRKEVVERIKVARSFGDLSENSEYDSAKEDQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+A+LE +I A +I+ + G+ ++ G TV L+E G+++ Y IVG E+D G
Sbjct: 61 VEGRIAQLEKMIRNAVMIENEKVDGNVVSLGKTVRLMELPDGEEEEYTIVGSAESDPFEG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+A++L+GK + D + VN PGGE EIL++
Sbjct: 121 KISNDSPMAQSLLGKTVNDRVVVNTPGGEMEVEILEIR 158
>gi|253996794|ref|YP_003048858.1| transcription elongation factor GreB [Methylotenera mobilis JLW8]
gi|253983473|gb|ACT48331.1| transcription elongation factor GreB [Methylotenera mobilis JLW8]
Length = 161
Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K +T +GF+ ++ E + ERP I++ +S A + GD SEN +Y K + R
Sbjct: 6 EKNYITPEGFEALRAEFHQLYKIERPEIVRTVSWAASNGDRSENGDYIYGKRRLRQIDSR 65
Query: 63 MAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
L + AE++D S +++ FGA V+L + + Y+IVG E + G +S
Sbjct: 66 CRHLMRRMDLAEIVDASQQQHLEKVYFGAWVTLYNLDDDTEYTYRIVGKDELEPSKGYIS 125
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A++++GK +GD + P GE T+EI+++ +
Sbjct: 126 WVSPLAKSILGKSIGDTVRAATPKGEATFEIIEIKY 161
>gi|88608560|ref|YP_506547.1| transcription elongation factor GreA [Neorickettsia sennetsu str.
Miyayama]
gi|123763706|sp|Q2GD99|GREA_NEOSM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|88600729|gb|ABD46197.1| transcription elongation factor GreA [Neorickettsia sennetsu str.
Miyayama]
Length = 159
Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 112/156 (71%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T +G+ K+Q+EL + +P ++ A+++AR GDLSENAEY A++ Q+ EG
Sbjct: 1 MRKLPITREGYCKLQEELEKLVKVVKPSVVAAVAQARELGDLSENAEYHEARKEQSFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ EL+ ++ AEVID+S +G+R+ FGA+V+L S YQIVG+ E+D++ G +S
Sbjct: 61 KIRELQLCLSEAEVIDVSQFTGERVKFGASVTLENMESKSVLIYQIVGNLESDIKEGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SSPI +A++ KE+G+I+ ++ P G+KTY+IL V +
Sbjct: 121 VSSPIGKAVMNKEVGEIVEIDLPSGKKTYKILGVEF 156
>gi|146313451|ref|YP_001178525.1| transcription elongation factor GreB [Enterobacter sp. 638]
gi|145320327|gb|ABP62474.1| transcription elongation factor GreB [Enterobacter sp. 638]
Length = 157
Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K+++E+ + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++D S ++ FGA V + + GD K ++IVG E + +SI SP+
Sbjct: 66 TKCLEYLRIVDYSPQQEGKVFFGAWVEIEN-DDGDTKRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ V P GE ++ + ++ ++
Sbjct: 125 ARALLKKEVGDLAIVQTPSGEASWYVNEIEYV 156
>gi|291515359|emb|CBK64569.1| transcription elongation factor GreA [Alistipes shahii WAL 8301]
Length = 158
Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +I +T++G+ KI+ EL + ERP I AI+EAR GDLSENAEY AA+E Q L
Sbjct: 1 MAQEIIYLTAEGYKKIKDELEHMRSVERPAISAAIAEARDKGDLSENAEYDAAREAQGLL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A+LE+ + A VID S + ++ + V+L+ N+ + Y IV + EA+++ G
Sbjct: 61 EMRIAKLEDTMANARVIDESKIDKSKVQILSKVTLLNHNNQKQMTYTIVAEHEANLREGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
++I +PIA+AL+G++ GD + V P G +EIL +
Sbjct: 121 LAIGTPIAKALLGRKKGDRVDVEVPAGTIHFEILDIS 157
>gi|205374243|ref|ZP_03227042.1| transcription elongation factor GreA [Bacillus coahuilensis m4-4]
Length = 158
Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats.
Identities = 60/152 (39%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T G +K++ EL + +R +++ I AR++GDLSEN+EY +AKE Q EGR+
Sbjct: 7 YPMTQAGKEKLENELEQLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRIV 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE +I A++I M+ D + G TV+ VE G++++Y IVG EAD G +S S
Sbjct: 67 TLEAMIRNAKIIQEDEMNSDTVTLGKTVTFVELPDGEEESYTIVGSAEADPFEGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+G+++ D +S+ PGGE I +
Sbjct: 127 PIAKSLMGRKVEDEVSIQTPGGEMQVRITGIK 158
>gi|148976494|ref|ZP_01813190.1| transcription elongation factor GreB [Vibrionales bacterium SWAT-3]
gi|145964070|gb|EDK29327.1| transcription elongation factor GreB [Vibrionales bacterium SWAT-3]
Length = 160
Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+++++ E E+RP I K ++ A + GD SENA+Y K L +
Sbjct: 1 MKTKLITREGYNRLKAEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + ++D S ++ FGA V + + G+ K ++IVG +E G +
Sbjct: 61 RVRFLRKFLPDVTIVDYSPQQEGKVFFGAWVEIEN-DDGEIKKFRIVGPEEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D +V P G+K + I + +
Sbjct: 120 SIDSPMARALLKKEVDDEFTVKTPEGDKEWFINSIRY 156
>gi|269140621|ref|YP_003297322.1| transcription elongation factor [Edwardsiella tarda EIB202]
gi|267986282|gb|ACY86111.1| transcription elongation factor [Edwardsiella tarda EIB202]
gi|304560408|gb|ADM43072.1| Transcription elongation factor GreB [Edwardsiella tarda FL6-60]
Length = 158
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYEKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ +++D S ++ FGA V + GD K ++IVG E ++ +SI SP+
Sbjct: 66 RKCMSILKIVDYSPQQDGKVFFGAWVEVEN-ERGDIKRFRIVGYDEIFGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD +V P G+ + + + ++
Sbjct: 125 ARALLKKEVGDAATVATPQGDAEWYVNAIDYV 156
>gi|163942129|ref|YP_001647013.1| transcription elongation factor GreA [Bacillus weihenstephanensis
KBAB4]
gi|229135202|ref|ZP_04264001.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST196]
gi|163864326|gb|ABY45385.1| transcription elongation factor GreA [Bacillus weihenstephanensis
KBAB4]
gi|228648244|gb|EEL04280.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST196]
Length = 175
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 60/152 (39%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 24 YPMTQEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I+ + + G TV+ E GD++ Y IVG EAD G +S S
Sbjct: 84 QLENMIRNAVIIEDNGEESTVVTLGKTVTFKELPGGDEEAYIIVGSAEADPFEGRISNDS 143
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 144 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 175
>gi|170693644|ref|ZP_02884802.1| transcription elongation factor GreB [Burkholderia graminis C4D1M]
gi|170141426|gb|EDT09596.1| transcription elongation factor GreB [Burkholderia graminis C4D1M]
Length = 206
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL ERP ++K +S A + GD SEN +Y K + R+
Sbjct: 46 KNYITPAGYRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 105
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AE++D S D++ FGATV ++ GD+ IVG E D+ G VS
Sbjct: 106 RFLTKRLDLAEIVDSSKQENVDQVFFGATVEYATQD-GDEHTVTIVGIDEVDLDIGHVSW 164
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ ++GD +++ P G + +IL V +
Sbjct: 165 ISPIARALLKAKVGDTVTLYTPAGPQPIDILDVKY 199
>gi|257464600|ref|ZP_05628971.1| transcription elongation factor GreB [Actinobacillus minor 202]
gi|257450260|gb|EEV24303.1| transcription elongation factor GreB [Actinobacillus minor 202]
Length = 162
Score = 156 bits (396), Expect = 8e-37, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRAGWQALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V L + G+ Y+IVG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEE-GEVAQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK D I+V P G+ + I ++ +
Sbjct: 120 SIDSPVARALIGKMQDDEITVETPVGKVMWFINKIWY 156
>gi|222528673|ref|YP_002572555.1| transcription elongation factor GreA [Caldicellulosiruptor bescii
DSM 6725]
gi|312623018|ref|YP_004024631.1| transcription elongation factor grea [Caldicellulosiruptor
kronotskyensis 2002]
gi|222455520|gb|ACM59782.1| transcription elongation factor GreA [Caldicellulosiruptor bescii
DSM 6725]
gi|312203485|gb|ADQ46812.1| transcription elongation factor GreA [Caldicellulosiruptor
kronotskyensis 2002]
Length = 162
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 56/153 (36%), Positives = 93/153 (60%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+
Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAALEERI 68
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A LE +I A++ID +S D + G V + ++GD Y IVG +EAD + +S
Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDIFEYSIVGSKEADPLNFKISDE 128
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+GK++GD++ V+ P G+ Y+IL++
Sbjct: 129 SPVGKALMGKKVGDVVEVSVPAGKFRYKILEIS 161
>gi|329297354|ref|ZP_08254690.1| transcription elongation factor GreB [Plautia stali symbiont]
Length = 211
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 87/159 (54%), Gaps = 3/159 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K++ E E+RP I + +S A + GD SENA+Y K L +
Sbjct: 1 MKTQLITREGYNKLRAEHDHLWNEKRPEITRIVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119
R+ L + +++D + ++ FGA V + GD K ++IVG E D
Sbjct: 61 RVRYLRKCLAELKIVDYAPQQEGKVFFGAWVEVEN-EQGDVKRFRIVGPDEIYGDTVKDY 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SI SP+ARALI KE+ + ++VN P G+K + + ++ ++
Sbjct: 120 ISIDSPMARALIKKEVDEEVTVNTPEGQKVWFVNRIEYV 158
>gi|322830974|ref|YP_004211001.1| transcription elongation factor GreB [Rahnella sp. Y9602]
gi|321166175|gb|ADW71874.1| transcription elongation factor GreB [Rahnella sp. Y9602]
Length = 157
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+DK++ EL + ++ERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTKLITREGYDKLKTELDFLWRDERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + ++D S ++ FGA V + + GD K ++IVG E + +S
Sbjct: 61 RIRYLTKCMEQLRIVDYSPQQDGKVFFGAWVEVEN-DDGDIKRFRIVGYDEIFGRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE+GD + V P G+ T+ + ++ +
Sbjct: 120 IDSPMARALLKKEVGDSLVVTTPVGDATWYVNEIDY 155
>gi|206575923|ref|YP_002236222.1| transcription elongation factor GreB [Klebsiella pneumoniae 342]
gi|206564981|gb|ACI06757.1| transcription elongation factor GreB [Klebsiella pneumoniae 342]
Length = 157
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 92/152 (60%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QE+ + + ERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYEKLKQEMDYLWRHERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +++D S ++ FGA V + + GD K ++IVG E + +SI SP+
Sbjct: 66 TKCLEQLKIVDYSPQQEGKVFFGAWVEIEN-DEGDTKRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ VN P GE ++ + ++ ++
Sbjct: 125 ARALLKKEVGDLAIVNTPAGEASWYVNEIEYV 156
>gi|332982218|ref|YP_004463659.1| transcription elongation factor GreA [Mahella australiensis 50-1
BON]
gi|332699896|gb|AEE96837.1| transcription elongation factor GreA [Mahella australiensis 50-1
BON]
Length = 158
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M++K +T +G +K+++EL + + +R I I +A A+GDLSENAEY AK Q
Sbjct: 1 MINKETLLTVEGIEKLEKELEYLKTVKRREIAAKIKQALAFGDLSENAEYDEAKNEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LEN++ A+VID ++ D++ G+TV L + GD + Y IVG EAD
Sbjct: 61 EGRIVTLENMLRNAKVIDADEITTDKVTIGSTVVLRDIEMGDDEEYVIVGSAEADPFKHK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +AL+GK GDI+ + P G Y I+ +
Sbjct: 121 ISNESPVGKALLGKSKGDIVEITVPDGIIRYSIVDIK 157
>gi|16762784|ref|NP_458401.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|29144271|ref|NP_807613.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|62182005|ref|YP_218422.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|161616543|ref|YP_001590508.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167549293|ref|ZP_02343052.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|168232640|ref|ZP_02657698.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168235096|ref|ZP_02660154.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168260773|ref|ZP_02682746.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168465229|ref|ZP_02699121.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168818685|ref|ZP_02830685.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194443767|ref|YP_002042754.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194471051|ref|ZP_03077035.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194738363|ref|YP_002116445.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197249725|ref|YP_002148426.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|198242185|ref|YP_002217462.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200387248|ref|ZP_03213860.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204928487|ref|ZP_03219686.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|207858743|ref|YP_002245394.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213417934|ref|ZP_03351023.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213426886|ref|ZP_03359636.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213582289|ref|ZP_03364115.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
gi|213610173|ref|ZP_03369999.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213647809|ref|ZP_03377862.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213852069|ref|ZP_03381601.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|224585297|ref|YP_002639096.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|238910491|ref|ZP_04654328.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289807151|ref|ZP_06537780.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
gi|289824835|ref|ZP_06544278.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25452995|sp|Q8Z217|GREB_SALTI RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|25321439|pir||AC0998 transcription elongation factor GreB greB [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505090|emb|CAD08111.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29139908|gb|AAO71473.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|62129638|gb|AAX67341.1| transcription elongation factor and transcript cleavage [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161365907|gb|ABX69675.1| hypothetical protein SPAB_04359 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194402430|gb|ACF62652.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194457415|gb|EDX46254.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194713865|gb|ACF93086.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195632511|gb|EDX50995.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197213428|gb|ACH50825.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197291264|gb|EDY30616.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197936701|gb|ACH74034.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199604346|gb|EDZ02891.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204321920|gb|EDZ07118.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205325500|gb|EDZ13339.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205333162|gb|EDZ19926.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205344627|gb|EDZ31391.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205350295|gb|EDZ36926.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206710546|emb|CAR34904.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|224469825|gb|ACN47655.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|320087918|emb|CBY97680.1| Transcription elongation factor greA Transcript cleavage factor
greA [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|322614123|gb|EFY11059.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322618015|gb|EFY14908.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322625371|gb|EFY22197.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629836|gb|EFY26609.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632275|gb|EFY29026.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322636374|gb|EFY33081.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322643230|gb|EFY39799.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322644768|gb|EFY41304.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322651207|gb|EFY47591.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322654925|gb|EFY51240.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322659182|gb|EFY55434.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322663117|gb|EFY59321.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668603|gb|EFY64756.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322674593|gb|EFY70686.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322678201|gb|EFY74262.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682542|gb|EFY78563.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322684255|gb|EFY80261.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|322716493|gb|EFZ08064.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
gi|323192190|gb|EFZ77422.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323196384|gb|EFZ81536.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323201815|gb|EFZ86878.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323206357|gb|EFZ91318.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211950|gb|EFZ96777.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323216856|gb|EGA01579.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323222255|gb|EGA06638.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323224269|gb|EGA08558.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323228198|gb|EGA12329.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233535|gb|EGA17628.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323237003|gb|EGA21070.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323243782|gb|EGA27798.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323245976|gb|EGA29963.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323250752|gb|EGA34630.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323255763|gb|EGA39513.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323261379|gb|EGA44965.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323267648|gb|EGA51130.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323268529|gb|EGA51996.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326625243|gb|EGE31588.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
Length = 157
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V + + GD ++IVG E + +SI SP+
Sbjct: 66 TKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGDTLKFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ VN P GE + + + ++
Sbjct: 125 ARALLKKEVGDLAVVNTPVGEANWYVNAIEYV 156
>gi|78222321|ref|YP_384068.1| GreA/GreB family elongation factor [Geobacter metallireducens
GS-15]
gi|78193576|gb|ABB31343.1| GreA/GreB family elongation factor [Geobacter metallireducens
GS-15]
Length = 161
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 54/152 (35%), Positives = 86/152 (56%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G K++ EL W +EERPR+ + +S+A A GD SENAEY K+ + R+
Sbjct: 7 YITPEGAKKLRDELAWLWKEERPRVTQGVSDAAAEGDRSENAEYIYGKKRLREIDRRIRF 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V++ + ++ FGA + L E GD+ Y++VG E D G +SI SP
Sbjct: 67 LTQRLDHLTVVEDPPPATGKVFFGAWIRL-ETEEGDEVIYRVVGPDETDASKGFISIDSP 125
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ +AL+G+ GD + V P GE + +L+V +
Sbjct: 126 MGKALLGRNEGDEVPVRRPAGEAVFTVLEVAY 157
>gi|327395566|dbj|BAK12988.1| transcription elongation factor GreB [Pantoea ananatis AJ13355]
Length = 158
Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +GF+ ++ EL +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MRTRLITREGFNTLKAELDHLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L I + ++D S ++ FGA V + + GD K ++IVG E + +S
Sbjct: 61 RVRYLSKSIEQLRIVDYSPQQDGKVFFGAWVEVEN-DDGDVKRFRIVGYDEIFGRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARAL+ K +GD V P G + + ++ ++
Sbjct: 120 IDSPMARALLKKAVGDAAVVETPAGPACWYVNEISYV 156
>gi|262273560|ref|ZP_06051374.1| transcription elongation factor GreB [Grimontia hollisae CIP
101886]
gi|262222538|gb|EEY73849.1| transcription elongation factor GreB [Grimontia hollisae CIP
101886]
Length = 161
Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M VT +G++K++QEL + E RP I K +S A + GD SENA+Y K L +
Sbjct: 1 MKKTDLVTREGYNKLKQELDYLWNERRPEITKIVSWAASLGDRSENADYTYNKRLLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + VID S ++ FGA V + + GD +++IVG E + +
Sbjct: 61 RRVRYLRKRLEVLRVIDYSPQQDGKVFFGAWVDVEN-DDGDTLSFRIVGPDEIYGRKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALI KE+ D V P G K + + ++ +
Sbjct: 120 SIDSPMARALIKKEVDDEAVVATPEGPKVWYVNRIRY 156
>gi|51894292|ref|YP_076983.1| transcription elongation factor [Symbiobacterium thermophilum IAM
14863]
gi|51857981|dbj|BAD42139.1| transcription elongation factor [Symbiobacterium thermophilum IAM
14863]
Length = 157
Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + ++ G +++QEL + + +R + + I +AR YGD+SEN+EY+ AK Q
Sbjct: 1 MAEKEVLLSLDGLKQLEQELLYLRTVKRMEVAERIKQAREYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A VID + + G+TV L + GD+ Y IVG EAD
Sbjct: 61 EGRILVLEKMLRNARVIDEPVGQQEVVVLGSTVVLRDLEYGDEHTYTIVGTTEADPAHNR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ RA++G+ +G +++V+AP G YEI+ +
Sbjct: 121 ISNESPVGRAIMGQRVGTVVAVDAPDGVFKYEIVAIK 157
>gi|157148990|ref|YP_001456309.1| transcription elongation factor GreB [Citrobacter koseri ATCC
BAA-895]
gi|157086195|gb|ABV15873.1| hypothetical protein CKO_04828 [Citrobacter koseri ATCC BAA-895]
Length = 157
Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++ EL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYEKLKHELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V + + GD + ++IVG E + +SI SP+
Sbjct: 66 TKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DEGDIRRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ V+ P GE ++ + ++ ++
Sbjct: 125 ARALLKKEVGDLAVVHTPAGEASWYVNEIEYV 156
>gi|28871634|ref|NP_794253.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213966657|ref|ZP_03394808.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tomato T1]
gi|301383167|ref|ZP_07231585.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tomato Max13]
gi|302063398|ref|ZP_07254939.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tomato K40]
gi|302133771|ref|ZP_07259761.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|37999561|sp|Q87WP5|GREA_PSESM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|28854886|gb|AAO57948.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213928507|gb|EEB62051.1| transcription elongation factor GreA [Pseudomonas syringae pv.
tomato T1]
gi|331016638|gb|EGH96694.1| transcription elongation factor GreA [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 158
Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats.
Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E
Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A VID++T+ ++ FG TV + + + YQIVG+ EAD++ G +
Sbjct: 61 RIRDIEGRMQNAVVIDVTTIAHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SPIARALI KE GD++ V P G YEI++V I
Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158
>gi|300931063|ref|ZP_07146417.1| transcription elongation factor GreB [Escherichia coli MS 187-1]
gi|300461083|gb|EFK24576.1| transcription elongation factor GreB [Escherichia coli MS 187-1]
Length = 170
Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++KI+QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKIKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 74 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ KE+GD+ VN P GE ++ + + ++
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 168
>gi|184155762|ref|YP_001844102.1| transcription elongation factor GreA [Lactobacillus fermentum IFO
3956]
gi|227515646|ref|ZP_03945695.1| elongation factor GreA [Lactobacillus fermentum ATCC 14931]
gi|260663522|ref|ZP_05864412.1| transcription elongation factor GreA [Lactobacillus fermentum
28-3-CHN]
gi|238692987|sp|B2GD90|GREA_LACF3 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|183227106|dbj|BAG27622.1| transcription elongation factor GreA [Lactobacillus fermentum IFO
3956]
gi|227086076|gb|EEI21388.1| elongation factor GreA [Lactobacillus fermentum ATCC 14931]
gi|260552063|gb|EEX25116.1| transcription elongation factor GreA [Lactobacillus fermentum
28-3-CHN]
Length = 158
Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats.
Identities = 57/158 (36%), Positives = 97/158 (61%), Gaps = 2/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T+ G K++QEL + RP +I I AR+YGDLSEN+EY++AK+ Q
Sbjct: 1 MAEEKSFPMTADGKAKLEQELEDLRLVRRPEVINRIKIARSYGDLSENSEYESAKDEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR++++E ++ A +ID ++ D ++ G ++ E + ++Y IVG+ E+D SG
Sbjct: 61 VEGRISQIETMLQYAVIIDNEDVAADEVSMGREITFQELPDEEPESYTIVGESESDPLSG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+A+ L+G ++GD + + P G +IL V
Sbjct: 121 KISNESPMAKGLLGHKVGDTVEIEIPNGSMKVKILSVK 158
>gi|315634956|ref|ZP_07890237.1| transcription elongation factor GreB [Aggregatibacter segnis ATCC
33393]
gi|315476218|gb|EFU66969.1| transcription elongation factor GreB [Aggregatibacter segnis ATCC
33393]
Length = 160
Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G++ + +EL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 2 MAKSNYITRQGWNVLDRELKFLWKEERPQVTQAVSDAAALGDRSENAEYIYGKRRLREID 61
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D S ++ FGA V L ++ G+ K Y+IVG E D +
Sbjct: 62 RRVRFLTKRLEVLQIVDYSPKQEGKVFFGAWVELENED-GEVKQYRIVGCDEFDPAKNWI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGKE D I+V P G+ + ++ +
Sbjct: 121 SIDSPVARALIGKEEDDEITVETPSGKIQLYVNRIWY 157
>gi|320157698|ref|YP_004190077.1| transcription elongation factor GreB [Vibrio vulnificus MO6-24/O]
gi|319933010|gb|ADV87874.1| transcription elongation factor GreB [Vibrio vulnificus MO6-24/O]
Length = 160
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L +
Sbjct: 1 MKTKMITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + +++D + ++ FGA V + +G+ ++IVG +E G +
Sbjct: 61 RVRFLSKFLPEVKIVDYAPQQEGKVFFGAWVEIEN-EAGEVMKFRIVGPEEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D + V P G K + I + +
Sbjct: 120 SIDSPMARALLKKEVDDEVQVPTPSGIKEWFINSIEY 156
>gi|317128247|ref|YP_004094529.1| transcription elongation factor GreA [Bacillus cellulosilyticus DSM
2522]
gi|315473195|gb|ADU29798.1| transcription elongation factor GreA [Bacillus cellulosilyticus DSM
2522]
Length = 157
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 61/154 (39%), Positives = 97/154 (62%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K +T +G +K+++EL + + E R +++ I AR++GDLSEN+EY +AKE Q EGR
Sbjct: 4 EKHYMTLEGKEKLEKELEYLKTERRKEVVERIKVARSFGDLSENSEYDSAKEEQAFVEGR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++ +E +I A +I + + + G TVS E GD++ Y IVG EAD G +S
Sbjct: 64 ISTIEKMIRNAVMIKEDSTNTSVVTLGKTVSFKELPDGDEEEYTIVGRAEADPLEGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+A++L+GK +G ++V PGG+ EIL+V
Sbjct: 124 DSPMAQSLMGKSVGQKVTVATPGGDMEVEILEVK 157
>gi|330877243|gb|EGH11392.1| transcription elongation factor GreA [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 158
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K P+T +G +++EL + RP++ + I AR GDL ENAEY AA+E Q + E
Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E + A VID++T+ ++ FG TV + + ++ Y+IVG+ EA+++ G +
Sbjct: 61 RIRDIEGRMQNAVVIDVTTIPHTGKVIFGTTVEIANVETDERVTYKIVGEDEANIKDGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+ SPIARALI KE GD++ V P G YEI++V
Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRH 157
>gi|332652694|ref|ZP_08418439.1| transcription elongation factor GreA [Ruminococcaceae bacterium
D16]
gi|332517840|gb|EGJ47443.1| transcription elongation factor GreA [Ruminococcaceae bacterium
D16]
Length = 157
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 96/156 (61%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T + ++Q EL + + + + I EAR++GDLSEN+EY AK Q
Sbjct: 1 MAKEYKLTPQRLQELQDELVYLKTVREKEVAELIKEARSFGDLSENSEYDEAKTEQGKLY 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+E I++ VID S G+ + G+TV++++K ++ Y+IVG QEAD +G++
Sbjct: 61 SRIAEVEEILSNYVVIDESDDGGNYVRIGSTVTVLDKEFDEELVYKIVGSQEADPMNGVI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP RAL+GK +GD + V+AP G Y++L+V
Sbjct: 121 SEDSPFGRALLGKNVGDDVVVDAPAGSVEYKLLKVE 156
>gi|161486671|ref|NP_933028.2| transcription elongation factor GreB [Vibrio vulnificus YJ016]
gi|60392329|sp|Q7MPX6|GREB_VIBVY RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
Length = 160
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L +
Sbjct: 1 MKTKMITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + +++D + ++ FGA V + +G+ ++IVG +E G +
Sbjct: 61 RVRFLSKFLPEVKIVDYAPQQEGKVFFGAWVEIEN-EAGEVMKFRIVGPEEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D + V P G K + I + +
Sbjct: 120 SIDSPMARALLKKEVDDEVQVPTPSGIKEWFINSIEY 156
>gi|189499862|ref|YP_001959332.1| transcription elongation factor GreA [Chlorobium phaeobacteroides
BS1]
gi|238692290|sp|B3EPH3|GREA_CHLPB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189495303|gb|ACE03851.1| transcription elongation factor GreA [Chlorobium phaeobacteroides
BS1]
Length = 160
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D++ +T G+++++ EL + + R +++ I+EARA+GDLSENAEY AA+E Q E
Sbjct: 1 MSDRVYLTKDGYNRLRDELTVLKSDVRKEVLEKIAEARAHGDLSENAEYDAAREQQRQLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSG 118
++ +LE+ +TRA ++D + DR+ +V L ++ ++ Y +V EAD G
Sbjct: 61 NKIGDLESKLTRATILDPKQVKTDRVYILTSVKLKNLDAQKEEIIEYTLVSSDEADTDLG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S+ SP+ ++L+GK +GD + + P GE YEIL++
Sbjct: 121 KISVRSPVGKSLLGKAVGDKVQIQVPKGELHYEILEI 157
>gi|256847484|ref|ZP_05552930.1| transcription elongation factor GreB [Lactobacillus coleohominis
101-4-CHN]
gi|256716148|gb|EEU31123.1| transcription elongation factor GreB [Lactobacillus coleohominis
101-4-CHN]
Length = 158
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 104/158 (65%), Gaps = 2/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M D+ P+T++G +K++QEL + + RP +IK I AR+YGDLSEN+EY++AK+ Q
Sbjct: 1 MADEKTFPMTAEGKEKLEQELEDLRLKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR++++EN++ A +ID ++ D ++ G +V+ E + + Y IVG+ E+D SG
Sbjct: 61 VEGRISQIENMLQYAVIIDNDDVAADEVSMGRSVTFKELPDEEPETYTIVGESESDPLSG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+A+ L+G ++G+ + ++ P G EI++V
Sbjct: 121 KISNESPMAKGLLGHKVGEKVDIDIPSGIMHVEIIEVK 158
>gi|251794119|ref|YP_003008850.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2]
gi|247541745|gb|ACS98763.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2]
Length = 158
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK I +T G K+++EL + +R + + I A YGD+SEN+EY+ AK Q
Sbjct: 1 MSDKEIILTQDGLKKLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I+ + D ++ G+ V++ + GD Y IVG E+D
Sbjct: 61 EGRIITLEKMLRNARIINNDEIDTDTVSIGSVVTVEDLEFGDTMEYAIVGSAESDPLRNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++GK+ G ++ V+ P G Y+I+ +
Sbjct: 121 ISNESPVGKAILGKKRGTVVDVSVPAGIIQYKIVDIK 157
>gi|302343822|ref|YP_003808351.1| GreA/GreB family elongation factor [Desulfarculus baarsii DSM 2075]
gi|301640435|gb|ADK85757.1| GreA/GreB family elongation factor [Desulfarculus baarsii DSM 2075]
Length = 155
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 63/155 (40%), Positives = 101/155 (65%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++ +T +G ++Q+EL ++ E P +KAI EARA+GDLSENAEY AAKE +
Sbjct: 1 MERKLLTREGQIRLQRELDHLRKVELPASVKAIEEARAHGDLSENAEYHAAKERNAIVAA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++AEL++ + +EVID + R+ FG V++ + + ++ +YQIVG E+D G +S
Sbjct: 61 KIAELKSELALSEVIDPLPQADGRVVFGCKVTIYDSETDEEASYQIVGAAESDASQGRMS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
++SP+ +AL+GKE GD + V PGG + EI+ V
Sbjct: 121 MTSPMGQALLGKEEGDEVKVQTPGGLRVIEIVSVQ 155
>gi|18311448|ref|NP_563382.1| transcription elongation factor GreA [Clostridium perfringens str.
13]
gi|110799156|ref|YP_697154.1| transcription elongation factor GreA [Clostridium perfringens ATCC
13124]
gi|110802874|ref|YP_699722.1| transcription elongation factor GreA [Clostridium perfringens
SM101]
gi|168206861|ref|ZP_02632866.1| transcription elongation factor GreA [Clostridium perfringens E
str. JGS1987]
gi|168211212|ref|ZP_02636837.1| transcription elongation factor GreA [Clostridium perfringens B
str. ATCC 3626]
gi|168215146|ref|ZP_02640771.1| transcription elongation factor GreA [Clostridium perfringens CPE
str. F4969]
gi|168218226|ref|ZP_02643851.1| transcription elongation factor GreA [Clostridium perfringens NCTC
8239]
gi|169343179|ref|ZP_02864200.1| transcription elongation factor GreA [Clostridium perfringens C
str. JGS1495]
gi|182625990|ref|ZP_02953753.1| transcription elongation factor GreA [Clostridium perfringens D
str. JGS1721]
gi|25452992|sp|Q8XHL7|GREA_CLOPE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|122956482|sp|Q0SQ85|GREA_CLOPS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|122958663|sp|Q0TMI6|GREA_CLOP1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|18146132|dbj|BAB82172.1| transcriptional elongation factor [Clostridium perfringens str. 13]
gi|110673803|gb|ABG82790.1| transcription elongation factor GreA [Clostridium perfringens ATCC
13124]
gi|110683375|gb|ABG86745.1| transcription elongation factor GreA [Clostridium perfringens
SM101]
gi|169298731|gb|EDS80807.1| transcription elongation factor GreA [Clostridium perfringens C
str. JGS1495]
gi|170661751|gb|EDT14434.1| transcription elongation factor GreA [Clostridium perfringens E
str. JGS1987]
gi|170710773|gb|EDT22955.1| transcription elongation factor GreA [Clostridium perfringens B
str. ATCC 3626]
gi|170713439|gb|EDT25621.1| transcription elongation factor GreA [Clostridium perfringens CPE
str. F4969]
gi|177908697|gb|EDT71208.1| transcription elongation factor GreA [Clostridium perfringens D
str. JGS1721]
gi|182379757|gb|EDT77236.1| transcription elongation factor GreA [Clostridium perfringens NCTC
8239]
Length = 158
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q
Sbjct: 1 MSEKKHIMTYEGVKKLEDELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNEQAFT 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +LEN++ A V+D S +S D + G+ V +++ + ++ Y IVG EAD +
Sbjct: 61 EGRIIQLENMLKNAVVVDESEISTDIVTVGSIVKVMDFDFDEEVEYSIVGSAEADPMNFK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ L+GK++GD++ + PGG +E+L +
Sbjct: 121 ISNESPVGEGLMGKKVGDVVEIEVPGGTTKFEVLGIR 157
>gi|282858005|ref|ZP_06267206.1| transcription elongation factor GreA [Pyramidobacter piscolens
W5455]
gi|282584159|gb|EFB89526.1| transcription elongation factor GreA [Pyramidobacter piscolens
W5455]
Length = 164
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 98/154 (63%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + +T +G+DK+ EL+ + EER +I + I EAR++GDLSENAEY AAK+ Q EG+
Sbjct: 9 DTVLMTQEGYDKLSTELKQLRSEERYKIARRIEEARSFGDLSENAEYAAAKDDQAKLEGK 68
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E ++RA++ID +++ ++ G TV++++ + Y IV +E+D + GL+S
Sbjct: 69 IQVMEYQLSRAKIIDSASLDNSHVSVGTTVTIMDITHNKEFVYSIVSSEESDPEKGLISS 128
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ RAL+ K +GD + V P G + I ++
Sbjct: 129 VSPVGRALMNKRVGDEVPVKVPMGIRKLRIRKIR 162
>gi|319761755|ref|YP_004125692.1| transcription elongation factor greb [Alicycliphilus denitrificans
BC]
gi|317116316|gb|ADU98804.1| transcription elongation factor GreB [Alicycliphilus denitrificans
BC]
Length = 188
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+ +++ EL EERP+++ + A + GD SEN +Y K+ + R+
Sbjct: 27 KNYITPQGYARLRAELLSLIDEERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S +G D+I FGATV+ V+ + G ++ I+G EAD +S
Sbjct: 87 RFLTKRLEIAEVVDPSVHAGSDQIFFGATVTYVD-DEGVERTVTILGVDEADNGLQQISW 145
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ GD +S+ P G +T EIL V +
Sbjct: 146 ISPVARALLKAREGDEVSLQTPAGTRTLEILSVHY 180
>gi|302871282|ref|YP_003839918.1| GreA/GreB family elongation factor [Caldicellulosiruptor
obsidiansis OB47]
gi|302574141|gb|ADL41932.1| GreA/GreB family elongation factor [Caldicellulosiruptor
obsidiansis OB47]
Length = 162
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 93/153 (60%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+
Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAAVEERI 68
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A LE +I A++ID +S D + G V + ++GD Y IVG +EAD + +S
Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDVFEYSIVGSKEADPLNFKISDE 128
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+GK++GD++ VN P G+ Y+IL++
Sbjct: 129 SPVGKALVGKKVGDVVEVNVPAGKFRYKILEIS 161
>gi|317494411|ref|ZP_07952825.1| transcription elongation factor GreB [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917661|gb|EFV39006.1| transcription elongation factor GreB [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 158
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTQLITRGGYEKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + ++D S ++ FGA V + + G K ++IVG E Q +S
Sbjct: 61 RVRYLTKCLEQLRIVDYSPQQDGKVFFGAWVEVEN-DEGTIKRFRIVGYDEIFGQKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE+GD ++V P GE + + ++ +
Sbjct: 120 IDSPMARALLKKEVGDAVTVMTPAGEAVWYVNEIEY 155
>gi|291619237|ref|YP_003521979.1| GreB [Pantoea ananatis LMG 20103]
gi|291154267|gb|ADD78851.1| GreB [Pantoea ananatis LMG 20103]
Length = 158
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +GF+ ++ EL +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MRTRLITREGFNTLKAELDHLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + ++D S ++ FGA V + + GD K ++IVG E + +S
Sbjct: 61 RVRYLSKSLEQLRIVDYSPQQDGKVFFGAWVEVEN-DEGDVKRFRIVGYDEIFGRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARAL+ K +GD V P G + + ++ ++
Sbjct: 120 IDSPMARALLKKAVGDAAVVETPAGPACWYVNEISYV 156
>gi|152989359|ref|YP_001347666.1| transcription elongation factor GreB [Pseudomonas aeruginosa PA7]
gi|150964517|gb|ABR86542.1| transcription elongation factor GreB [Pseudomonas aeruginosa PA7]
Length = 168
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGAARLRAELHELWHVRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ +R+ FGA V+L +++ G++ Y+IVG E D+++ +SI SP+
Sbjct: 75 RKRLENLKVVGERPADANRVYFGAWVTLEDED-GEQARYRIVGPDELDLRNNQISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+GKEL + V P GEK + ++++ +
Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEIDY 164
>gi|300919309|ref|ZP_07135822.1| transcription elongation factor GreB [Escherichia coli MS 115-1]
gi|300413604|gb|EFJ96914.1| transcription elongation factor GreB [Escherichia coli MS 115-1]
Length = 153
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 53/153 (34%), Positives = 89/153 (58%), Gaps = 2/153 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ARAL+ KE+GD+ VN P GE ++ + +
Sbjct: 121 DSPMARALLKKEVGDLAVVNTPAGEASWYVNAI 153
>gi|300718779|ref|YP_003743582.1| transcription elongation factor [Erwinia billingiae Eb661]
gi|299064615|emb|CAX61735.1| Transcription elongation factor [Erwinia billingiae Eb661]
Length = 159
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+DK++QEL + +E+RP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTQLITREGYDKLKQELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + +++ S ++ FGA V + ++GD K ++I G E ++ +S
Sbjct: 61 RVRYLTKCLEQLRIVEYSPQQDGKVFFGAWVEIEN-DAGDVKRFRIAGYDEIFGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARAL+ KE+GD+ V P G+ + ++ + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVPTPVGDAHWYVVAIDYV 156
>gi|300311440|ref|YP_003775532.1| transcription elongation/transcript cleavage factor protein
[Herbaspirillum seropedicae SmR1]
gi|300074225|gb|ADJ63624.1| transcription elongation/transcript cleavage factor protein
[Herbaspirillum seropedicae SmR1]
Length = 185
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G +I+ EL EERP +++ +S A + GD SEN +Y K+ + R+
Sbjct: 28 KNYMTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRRI 87
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S G D+I FGATV+ + G+ IVG E D G +S
Sbjct: 88 RFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYENQR-GEAHTVTIVGIDELDPLKGRISW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL GD + + P G + IL+V +
Sbjct: 147 ISPVARALTKAREGDEVVLQTPAGLEQLTILEVSY 181
>gi|213964046|ref|ZP_03392289.1| transcription elongation factor GreA [Capnocytophaga sputigena
Capno]
gi|213953328|gb|EEB64667.1| transcription elongation factor GreA [Capnocytophaga sputigena
Capno]
Length = 157
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 94/156 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T +G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MKKVSYYTPEGLKKLRDELNQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE ++ A +ID S + ++ +TV L + + Y +V + EAD+++G +
Sbjct: 61 MKIAKLEELVANARIIDESQLDVSKVLVLSTVKLKNLANKMEITYTLVAESEADLKAGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+SSPI + L+GK +G+I + P G EIL++
Sbjct: 121 SVSSPIGKGLLGKSVGEIAEIKVPNGTLKMEILEIS 156
>gi|288933209|ref|YP_003437268.1| GreA/GreB family elongation factor [Klebsiella variicola At-22]
gi|290512013|ref|ZP_06551381.1| transcription elongation factor GreB [Klebsiella sp. 1_1_55]
gi|288887938|gb|ADC56256.1| GreA/GreB family elongation factor [Klebsiella variicola At-22]
gi|289775803|gb|EFD83803.1| transcription elongation factor GreB [Klebsiella sp. 1_1_55]
Length = 157
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QE+ + ++ERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYEKLKQEMDYLWRQERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +++D S ++ FGA V + + GD K ++IVG E + +SI SP+
Sbjct: 66 TKCLEQLKIVDYSPQQEGKVFFGAWVEIEN-DEGDTKRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ VN P GE ++ + ++ ++
Sbjct: 125 ARALLKKEVGDLAIVNTPAGEASWYVNEIEYV 156
>gi|190571574|ref|YP_001975932.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
gi|213018976|ref|ZP_03334783.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
gi|190357846|emb|CAQ55302.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Culex quinquefasciatus Pel]
gi|212995085|gb|EEB55726.1| transcription elongation factor GreA [Wolbachia endosymbiont of
Culex quinquefasciatus JHB]
Length = 164
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 73/160 (45%), Positives = 111/160 (69%), Gaps = 4/160 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
+V+K P+T +GF+ +Q EL ++E+ P II+AIS+AR GDLSENAEY AA+E + E
Sbjct: 5 IVNKFPITREGFESMQVELEKLKEEK-PSIIQAISDARDQGDLSENAEYHAARERLSFIE 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV---EKNSGDKKNYQIVGDQEADVQS 117
GR+ E+E+ ++ AEVI++ +SGD + FGATV++ + NS + Y+IVG EAD
Sbjct: 64 GRIIEVESKLSHAEVIEVKNLSGDTVMFGATVTVSMLGDDNSEIEYVYKIVGGYEADASK 123
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
L+S SP+ ALIGK++G+ + V P GEK Y+I+++ +
Sbjct: 124 QLISTDSPLGSALIGKKVGEYVEVIVPNGEKLYKIVKIEF 163
>gi|330826535|ref|YP_004389838.1| transcription elongation factor GreB [Alicycliphilus denitrificans
K601]
gi|329311907|gb|AEB86322.1| transcription elongation factor GreB [Alicycliphilus denitrificans
K601]
Length = 188
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+ +++ EL EERP+++ + A + GD SEN +Y K+ + R+
Sbjct: 27 KNYITPQGYARLRAELLSLIDEERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S +G D+I FGATV+ V+ + G ++ I+G EAD +S
Sbjct: 87 RFLTKRLEIAEVVDPSVHAGSDQIFFGATVTYVD-DEGVERTVTILGVDEADNGLQQISW 145
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ GD +S+ P G +T EIL V +
Sbjct: 146 ISPVARALLKAREGDEVSLQTPAGTRTLEILSVHY 180
>gi|134298052|ref|YP_001111548.1| transcription elongation factor GreA [Desulfotomaculum reducens
MI-1]
gi|134050752|gb|ABO48723.1| transcription elongation factor GreA [Desulfotomaculum reducens
MI-1]
Length = 158
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T G +++ EL + +R ++ + I +A +GD+SEN+EY+ AK Q
Sbjct: 1 MKEKDVMLTVTGLKQLEDELEQLKTVKRRQVAERIKQAIEFGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A++ID + + ++ G+ V L + GD+ Y IVG EAD +
Sbjct: 61 EGRILTLEKMLRNAKIIDDENLDNEVVSLGSKVILKDLEFGDELEYSIVGSVEADPDANK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ RA++G+ G ++ VN P G YEI+ +L
Sbjct: 121 ISNESPVGRAILGQSKGSVVEVNVPAGILKYEIVDIL 157
>gi|270264441|ref|ZP_06192707.1| transcription elongation factor GreB [Serratia odorifera 4Rx13]
gi|270041577|gb|EFA14675.1| transcription elongation factor GreB [Serratia odorifera 4Rx13]
Length = 157
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+D ++QEL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MRTQLITREGYDNLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + +++D S ++ FGA V + +G+ K ++IVG E + +S
Sbjct: 61 RVRYLTKCLEQLKIVDYSPQQEGKVFFGAWVEVEN-ENGECKRFRIVGYDEIFGRRDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARAL+ KE+GD +VN P G+ + + ++ ++
Sbjct: 120 IDSPMARALLKKEVGDAATVNTPVGDALWYVNEIEYV 156
>gi|312879693|ref|ZP_07739493.1| transcription elongation factor GreA [Aminomonas paucivorans DSM
12260]
gi|310782984|gb|EFQ23382.1| transcription elongation factor GreA [Aminomonas paucivorans DSM
12260]
Length = 153
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 94/150 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QEL + + R I + EARA+GDLSENAEY AAKE Q E R+ L
Sbjct: 2 MTREGYEKLKQELISLRGDGRSEIAAKLEEARAFGDLSENAEYHAAKEEQEKLESRILWL 61
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +++ ++++ + ++ G TVSL + ++ + Y +VG +EAD ++ +S SP+
Sbjct: 62 EYQLSKTRIVEVGDLDTSSVSLGTTVSLRDLDAQTQYTYTLVGSEEADPKTNRISSQSPV 121
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+A++GK +G+ + V P G + ++L++
Sbjct: 122 GKAILGKTVGEEVMVRVPKGVRHLKVLEIR 151
>gi|254520541|ref|ZP_05132597.1| transcription elongation factor GreA [Clostridium sp. 7_2_43FAA]
gi|226914290|gb|EEH99491.1| transcription elongation factor GreA [Clostridium sp. 7_2_43FAA]
Length = 160
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 89/155 (57%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EG
Sbjct: 4 TKKFVMTYEGVKKLEDELEFLKSVKRKEITEKIKVALGYGDLSENSEYDEAKNEQAFTEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LEN++ A V+D S + D+++ G V + + ++ Y IVG EAD +S
Sbjct: 64 RIIQLENMLKNAVVVDGSEIPTDKVSVGTKVKVKDYEFDEEVEYSIVGSAEADPMEFKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ AL+GK++G+I+ V PGG +EIL +
Sbjct: 124 NESPVGAALLGKKVGEIVEVLVPGGINKFEILGIR 158
>gi|254797022|ref|YP_003081859.1| transcription elongation factor GreA [Neorickettsia risticii str.
Illinois]
gi|254590253|gb|ACT69615.1| transcription elongation factor GreA [Neorickettsia risticii str.
Illinois]
Length = 157
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 67/156 (42%), Positives = 112/156 (71%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+P+T +G+ K+Q+EL + +P +I A+++AR GDLSENAEY A++ Q+ EG
Sbjct: 1 MRKLPITREGYCKLQEELEKLVKVVKPSVIAAVAQARELGDLSENAEYHEARKEQSFVEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ EL+ ++ AEVID+S +G+R+ FGA+V+L + YQIVG+ E+D++ G +S
Sbjct: 61 KIRELQLHLSEAEVIDVSQFTGERVKFGASVTLENMENESVLVYQIVGNLESDIKEGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SSPI +A++ KE+G+I+ ++ P G+KTY+IL V +
Sbjct: 121 VSSPIGKAVMNKEVGEIVEIDLPSGKKTYKILGVEF 156
>gi|16766791|ref|NP_462406.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|167990706|ref|ZP_02571805.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168241643|ref|ZP_02666575.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|194447454|ref|YP_002047527.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197264550|ref|ZP_03164624.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|25452998|sp|Q8ZLJ2|GREB_SALTY RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|16422062|gb|AAL22365.1| transcription elongation factor and transcript cleavage [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|194405758|gb|ACF65977.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|197242805|gb|EDY25425.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|205330768|gb|EDZ17532.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205338738|gb|EDZ25502.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|261248658|emb|CBG26496.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267995723|gb|ACY90608.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301160046|emb|CBW19565.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312914527|dbj|BAJ38501.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|321226553|gb|EFX51603.1| Transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323131862|gb|ADX19292.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|332990355|gb|AEF09338.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 157
Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ FGA V + + GD+ ++IVG E + +SI SP+
Sbjct: 66 TKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGDRLKFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ VN P GE + + + ++
Sbjct: 125 ARALLKKEVGDLAVVNTPVGEANWYVNAIEYV 156
>gi|253576833|ref|ZP_04854158.1| transcription elongation factor GreA [Paenibacillus sp. oral taxon
786 str. D14]
gi|251843700|gb|EES71723.1| transcription elongation factor GreA [Paenibacillus sp. oral taxon
786 str. D14]
Length = 158
Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T G ++++EL + +R + + I A YGD+SEN+EY+ AK Q
Sbjct: 1 MSDKEVILTQDGLKRLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I+ + D ++ G+ V++ + GD Y IVG E+D
Sbjct: 61 EGRIITLEKMLRNARIINNDEIDTDTVSIGSIVTVEDLEFGDTMEYAIVGTAESDPMQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++GK+ G I+ VN P G Y+I+ +
Sbjct: 121 ISNESPVGKAILGKKKGAIVDVNVPAGVIQYKIVDIK 157
>gi|116495149|ref|YP_806883.1| transcription elongation factor [Lactobacillus casei ATCC 334]
gi|191638657|ref|YP_001987823.1| Transcription elongation factor GreA (Transcriptcleavage factor
GreA) [Lactobacillus casei BL23]
gi|227534836|ref|ZP_03964885.1| elongation factor GreA [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239632029|ref|ZP_04675060.1| transcription elongation factor [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301066713|ref|YP_003788736.1| transcription elongation factor [Lactobacillus casei str. Zhang]
gi|116105299|gb|ABJ70441.1| transcription elongation factor GreA [Lactobacillus casei ATCC 334]
gi|190712959|emb|CAQ66965.1| Transcription elongation factor GreA (Transcriptcleavage factor
GreA) [Lactobacillus casei BL23]
gi|227187592|gb|EEI67659.1| elongation factor GreA [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|239526494|gb|EEQ65495.1| transcription elongation factor [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300439120|gb|ADK18886.1| Transcription elongation factor [Lactobacillus casei str. Zhang]
gi|327382699|gb|AEA54175.1| Elongation factor GreA [Lactobacillus casei LC2W]
gi|327385886|gb|AEA57360.1| Elongation factor GreA [Lactobacillus casei BD-II]
Length = 156
Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 103/157 (65%), Gaps = 3/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK P+T++G K++ EL + ++RP +I I AR +GDLSEN+EY+AAK+ Q+
Sbjct: 1 MADKSYPMTAEGKKKLEDELEELKTKKRPEVIDRIKVARGFGDLSENSEYEAAKDEQSTL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ++ ++ AE+ID ++ + ++ G V+ + GD++ Y+IVG EAD +G
Sbjct: 61 ENRIVTIQTMLRYAEIIDSKAVAKNEVSLGKKVTF--EEDGDEETYEIVGAAEADAFNGK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ LIG+++GD ++++ PGGE +I +V
Sbjct: 119 ISNESPIAQGLIGRKVGDKVTISTPGGEMKIKITKVE 155
>gi|332533239|ref|ZP_08409106.1| transcription elongation factor GreB [Pseudoalteromonas
haloplanktis ANT/505]
gi|332037318|gb|EGI73773.1| transcription elongation factor GreB [Pseudoalteromonas
haloplanktis ANT/505]
Length = 159
Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ VT +G+ ++QQE +RP + K +S A + GD SENA+YQ K L +
Sbjct: 1 MKTNLVTREGYLQLQQEHDQLWNVKRPEVTKIVSWAASLGDRSENADYQYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L I ++ID S + ++ FGA V + + G+ K ++IVG E + +S
Sbjct: 61 RVRYLRKRIPDLKIIDYSPVQDGKVFFGAWVEIENEE-GEVKKFRIVGPDEIYDRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALI K++ D V P G+K + + + +
Sbjct: 120 IDSPMARALIKKQVDDEFEVTTPQGKKQWYVNSIDY 155
>gi|218708218|ref|YP_002415839.1| transcription elongation factor GreB [Vibrio splendidus LGP32]
gi|218321237|emb|CAV17187.1| Transcription elongation factor greB [Vibrio splendidus LGP32]
Length = 160
Score = 155 bits (393), Expect = 1e-36, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K++ E E+RP I K ++ A + GD SENA+Y K L +
Sbjct: 1 MKTKLITREGYNKLKAEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + ++D S ++ FGA V + + G+ K ++IVG +E G +
Sbjct: 61 RVRFLRKFLPDVTIVDYSPQQEGKVFFGAWVEIEN-DDGEIKKFRIVGPEEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D +V P G+K + I + +
Sbjct: 120 SIDSPMARALLKKEVDDEFTVTTPEGDKEWFINSIRY 156
>gi|256819149|ref|YP_003140428.1| transcription elongation factor GreA [Capnocytophaga ochracea DSM
7271]
gi|315224575|ref|ZP_07866401.1| transcription elongation factor GreA [Capnocytophaga ochracea
F0287]
gi|256580732|gb|ACU91867.1| transcription elongation factor GreA [Capnocytophaga ochracea DSM
7271]
gi|314945441|gb|EFS97464.1| transcription elongation factor GreA [Capnocytophaga ochracea
F0287]
Length = 157
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 95/156 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T++G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MKKVSYYTAEGLKKLRDELNQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE ++ A +ID S + ++ +TV L + + Y +V + EAD+++G +
Sbjct: 61 MKIAKLEELVANARIIDESQLDVSKVLVLSTVKLKNLANKMEITYTLVAESEADLKAGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+SSPI + L+GK +G+I + P G EIL++
Sbjct: 121 SVSSPIGKGLLGKSVGEIAEIKVPNGTLKLEILEIS 156
>gi|229918442|ref|YP_002887088.1| transcription elongation factor GreA [Exiguobacterium sp. AT1b]
gi|229469871|gb|ACQ71643.1| transcription elongation factor GreA [Exiguobacterium sp. AT1b]
Length = 157
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T G KI+ EL + R +++ I AR +GDLSENAEY AAKE Q +
Sbjct: 1 MAEKQHYMTLDGKAKIEHELNELKTVRRKEVVENIKIARDFGDLSENAEYDAAKEEQAMV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+A+LE ++ A +I ++ G TV+ + + + Y IVG EAD +G
Sbjct: 61 EGRIAQLEEMLRNAVIIQDDAGDNSVVSIGKTVTFFIQEDNEDETYTIVGGAEADPFTGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+G+ +GD+++V PGG+ EI ++
Sbjct: 121 ISNESPIAKALLGRTIGDVVTVQTPGGDMVVEIKEIK 157
>gi|161505931|ref|YP_001573043.1| transcription elongation factor GreB [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160867278|gb|ABX23901.1| hypothetical protein SARI_04112 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 157
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 88/152 (57%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D + ++ FGA V + + GD ++IVG E + +SI SP+
Sbjct: 66 TKCMENLKIVDYAPQQEGKVFFGAWVEIEN-DDGDTLKFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ VN P GE + + + ++
Sbjct: 125 ARALLKKEVGDLAVVNTPVGEANWYVNAIEYV 156
>gi|119471395|ref|ZP_01613867.1| transcription elongation factor and transcript cleavage
[Alteromonadales bacterium TW-7]
gi|119445671|gb|EAW26955.1| transcription elongation factor and transcript cleavage
[Alteromonadales bacterium TW-7]
Length = 160
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+ ++QQE +RP + K +S A + GD SENA+YQ K L +
Sbjct: 1 MKTNLITREGYLQLQQEHDHLWNVKRPEVTKIVSWAASLGDRSENADYQYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L I +ID S + ++ FGA V + GD K ++IVG E + +S
Sbjct: 61 RVRYLRKRIPDLNIIDYSPVQDGKVFFGAWVEIEN-EQGDIKKFRIVGPDEIYDRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALI K++ D V P G+K + I + +
Sbjct: 120 IDSPMARALIKKQVDDDFEVMTPQGKKEWYINSIEY 155
>gi|148381460|ref|YP_001256001.1| transcription elongation factor GreA [Clostridium botulinum A str.
ATCC 3502]
gi|153933740|ref|YP_001385835.1| transcription elongation factor GreA [Clostridium botulinum A str.
ATCC 19397]
gi|153937864|ref|YP_001389242.1| transcription elongation factor GreA [Clostridium botulinum A str.
Hall]
gi|229485762|sp|A7FZA6|GREA_CLOB1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|229485764|sp|A5I7P5|GREA_CLOBH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|148290944|emb|CAL85080.1| transcription elongation factor [Clostridium botulinum A str. ATCC
3502]
gi|152929784|gb|ABS35284.1| transcription elongation factor GreA [Clostridium botulinum A str.
ATCC 19397]
gi|152933778|gb|ABS39277.1| transcription elongation factor GreA [Clostridium botulinum A str.
Hall]
Length = 160
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 90/154 (58%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T +G K+++EL + + +R I + I A ++GDLSEN+EY AK Q EG
Sbjct: 4 AKKYVMTYEGVKKLEEELEFLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAFVEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LEN++ A ++D + + D ++ G+ V + + ++ Y IVG EAD + +S
Sbjct: 64 RIIQLENMLKNASIVDENEVPKDVVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNNKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ LIGK+ GDII V P G YEIL+V
Sbjct: 124 NESPVGHGLIGKKAGDIIEVAVPDGVSKYEILEV 157
>gi|303242488|ref|ZP_07328968.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2]
gi|302589956|gb|EFL59724.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2]
Length = 158
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV K + +T +G K++QEL + + +R + + I +A A+GDLSEN+EY AK Q
Sbjct: 1 MVKKEVVLTYEGLQKLEQELEFLKAVKRREVAERIKQALAFGDLSENSEYDEAKNEQAHV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +LEN++ A+VID + D ++ G+ V++++ ++ Y IVG EA+
Sbjct: 61 EGRIVQLENMLKNAKVIDEDEVKTDVVSVGSKVTILDIEFNEEIEYYIVGSAEANPSQFK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL+GK+ G ++ VN P G ++I+ +
Sbjct: 121 ISNESPVGSALMGKKKGTVVDVNVPDGIVKFKIVNIK 157
>gi|162451849|ref|YP_001614216.1| hypothetical protein sce3576 [Sorangium cellulosum 'So ce 56']
gi|161162431|emb|CAN93736.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
Length = 157
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D +T G ++ +EL + ERPR+++ +++A A GD SENAEY K+ +
Sbjct: 1 MSDPAYITPSGARRLSEELARLRSVERPRVVQEVADAAAQGDRSENAEYIYGKKKLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
RM L + +A V+D S GD++ FGATV + +++ G ++ YQIVG+ E D +G +
Sbjct: 61 RRMHYLTKRLEKAVVVDPSEQRGDKVFFGATVEIEDED-GARRTYQIVGEDEIDSAAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S SP+ R+L+GK GD+I+V P GE E++ V +
Sbjct: 120 SWRSPVGRSLLGKRAGDVITVRRPAGEAEMELISVRY 156
>gi|145631751|ref|ZP_01787512.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
gi|144982612|gb|EDJ90158.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
Length = 158
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V L + G+ K Y+IVG E +
Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFSPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK L D + V P G T I ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156
>gi|193214258|ref|YP_001995457.1| transcription elongation factor GreA [Chloroherpeton thalassium
ATCC 35110]
gi|238692700|sp|B3QV56|GREA_CHLT3 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|193087735|gb|ACF13010.1| transcription elongation factor GreA [Chloroherpeton thalassium
ATCC 35110]
Length = 158
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 99/156 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DK +T G++K++ EL + R ++++ I+EA+++GDLSENAEY+AAKE Q E
Sbjct: 1 MSDKTYLTKGGYNKLKDELDDLKTNVRQQVLEKITEAKSHGDLSENAEYEAAKEEQAQVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ LE +++ A ++D + D++ TV L + + ++ Y +V +EAD ++G +
Sbjct: 61 SRISTLERVLSTATILDEKDIKTDKVYILTTVLLKDLDRDEEVEYTLVSSEEADSENGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SPI + L+GK +G+I+ + P G YE+L +
Sbjct: 121 SVKSPIGKNLLGKSVGEIVEIKVPKGIMRYEVLNIK 156
>gi|33592252|ref|NP_879896.1| transcription elongation factor GreB [Bordetella pertussis Tohama
I]
gi|33595908|ref|NP_883551.1| transcription elongation factor GreB [Bordetella parapertussis
12822]
gi|33601290|ref|NP_888850.1| transcription elongation factor GreB [Bordetella bronchiseptica
RB50]
gi|33565987|emb|CAE36540.1| transcription elongation factor [Bordetella parapertussis]
gi|33571897|emb|CAE41415.1| transcription elongation factor [Bordetella pertussis Tohama I]
gi|33575726|emb|CAE32803.1| transcription elongation factor [Bordetella bronchiseptica RB50]
gi|332381670|gb|AEE66517.1| transcription elongation factor GreB [Bordetella pertussis CS]
Length = 184
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 88/153 (57%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + RM
Sbjct: 30 YMTPQGYARLRDELSHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRF 89
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + AEV+D + D++ FGATV +++ +G+++ IVG EA+ +G +S S
Sbjct: 90 LTKRLDIAEVVDPAAQPNRDQVFFGATVLYMDR-AGEERTVTIVGVDEAEPLAGKISWIS 148
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL GD +++ PGG + EIL+V +
Sbjct: 149 PVARALTKAHEGDTVTLRTPGGVEELEILEVRY 181
>gi|188590469|ref|YP_001919617.1| transcription elongation factor GreA [Clostridium botulinum E3 str.
Alaska E43]
gi|251779196|ref|ZP_04822116.1| transcription elongation factor GreA [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|238689627|sp|B2UXU9|GREA_CLOBA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|188500750|gb|ACD53886.1| transcription elongation factor GreA [Clostridium botulinum E3 str.
Alaska E43]
gi|243083511|gb|EES49401.1| transcription elongation factor GreA [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 160
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 90/154 (58%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EG+
Sbjct: 5 KQYVMTYEGVKKLEGELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAFTEGK 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +LEN + A V+D S + D ++ G+ V + + + ++ Y IVG EAD S +S
Sbjct: 65 ILQLENKLKNAVVVDESEIPKDIVSVGSKVKVKDYDFDEEVEYSIVGSAEADPMSFKISN 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+GK++GDI+ V P G +EIL +
Sbjct: 125 ESPVGKALVGKKIGDIVDVVVPDGISKFEILDIQ 158
>gi|51246041|ref|YP_065925.1| transcription elongation factor (GreA) [Desulfotalea psychrophila
LSv54]
gi|81641701|sp|Q6AL57|GREA_DESPS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|50877078|emb|CAG36918.1| probable transcription elongation factor (GreA) [Desulfotalea
psychrophila LSv54]
Length = 161
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 107/156 (68%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M+D+IP++ +G K+++EL + ER ++KAI AR +GDL ENAEY AAKE Q + E
Sbjct: 1 MIDRIPMSVRGNKKLKEELLRLTRVERLDVVKAIEVAREHGDLKENAEYHAAKERQGMIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +L++ + RAEVID +S R+ FG V L++ ++ ++ YQ++G +E++V++G +
Sbjct: 61 ARIMDLKDKLGRAEVIDCLQVSCKRVVFGTVVVLLDLDTDEEVTYQLLGPEESEVKAGSI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SPI R+++ KE GD + PGG + +E++++
Sbjct: 121 SVLSPIGRSMLSKEEGDEVVTKTPGGTREFEVVEIK 156
>gi|228999165|ref|ZP_04158747.1| Transcription elongation factor greA [Bacillus mycoides Rock3-17]
gi|228760782|gb|EEM09746.1| Transcription elongation factor greA [Bacillus mycoides Rock3-17]
Length = 158
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 60/152 (39%), Positives = 93/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 7 YPMTQEGKQKLENEIEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I+ + + G TV E GD++ Y IVG EAD G +S S
Sbjct: 67 QLENMIRNAVIIEDNGEESTVVTLGKTVVFKELPDGDEEAYTIVGSAEADPFEGRISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 127 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 158
>gi|317406344|gb|EFV86575.1| transcription elongation factor [Achromobacter xylosoxidans C54]
Length = 183
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 79/154 (51%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+++++ EL ERP +++ +S A + GD SEN +Y K+ + RM
Sbjct: 28 KNYMTPEGYERLRGELTHLMNVERPAVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRM 87
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L + AEV+D + F L +G+ IVG EA+ +G +S
Sbjct: 88 RFLTKRLDIAEVVDPAAQPNRDQVFFGATVLYSDKAGEDHTVTIVGVDEAEPLAGKISWI 147
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARALI GD + + PGG + +IL+V +
Sbjct: 148 SPVARALIKAREGDTVVLRTPGGIEELDILEVRY 181
>gi|294102451|ref|YP_003554309.1| transcription elongation factor GreA [Aminobacterium colombiense
DSM 12261]
gi|293617431|gb|ADE57585.1| transcription elongation factor GreA [Aminobacterium colombiense
DSM 12261]
Length = 163
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 55/149 (36%), Positives = 91/149 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K+ EL + + R I + + EAR++GDLSENAEY AAK+ Q+ E R++ L
Sbjct: 12 MTRSGYEKLTAELVELRSDGRAEISRQLEEARSFGDLSENAEYAAAKDEQSKLESRISWL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +++A+VID S + R+ G TV++ + Y +VG +EAD + +S SSP+
Sbjct: 72 EFQLSKAKVIDTSDVDTSRVTLGTTVTIEDITHKKVFTYTVVGSEEADPKMNHISSSSPV 131
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL GK +G+ + V P G + +I+ +
Sbjct: 132 GKALFGKTIGEEVQVKVPRGIRNLKIVSI 160
>gi|77361754|ref|YP_341329.1| transcription elongation factor and transcript cleavage
[Pseudoalteromonas haloplanktis TAC125]
gi|76876665|emb|CAI87887.1| transcription elongation factor and transcript cleavage
[Pseudoalteromonas haloplanktis TAC125]
Length = 159
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+ ++QQE +RP I K +S A + GD SENA+YQ K L +
Sbjct: 1 MKTNLITREGYLQLQQEHTHLWNVKRPEITKIVSWAASLGDRSENADYQYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L I ++ID S + ++ FGA V + G+ K ++IVG E + +S
Sbjct: 61 RVRYLRKRIPDLKIIDYSPVQDGKVFFGAWVEIEN-EQGETKKFKIVGPDEIYERKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ K++ D V P G+K + + + +
Sbjct: 120 IDSPMARALLKKQVDDEFDVITPQGKKQWYVNSISY 155
>gi|303252629|ref|ZP_07338792.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307247388|ref|ZP_07529435.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307260861|ref|ZP_07542547.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|302648597|gb|EFL78790.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|306856085|gb|EFM88241.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306869428|gb|EFN01219.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 162
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K +
Sbjct: 1 MAKSNYITRGGWQALDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V L G+ K Y+IVG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGKE+ D I V+ P G+ I ++ +
Sbjct: 120 SIDSPVARALIGKEVDDEIKVDTPLGKSLLYINKIWY 156
>gi|240949386|ref|ZP_04753727.1| transcription elongation factor GreB [Actinobacillus minor NM305]
gi|240296135|gb|EER46791.1| transcription elongation factor GreB [Actinobacillus minor NM305]
Length = 162
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRDGWQALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V L + G+ Y+IVG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEE-GEVAQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK D I+V P G+ + I ++ +
Sbjct: 120 SIDSPVARALIGKMQDDEITVETPIGKVMWFINKIWY 156
>gi|161501839|ref|NP_759835.2| transcription elongation factor GreB [Vibrio vulnificus CMCP6]
gi|31340138|sp|Q8DDU7|GREB_VIBVU RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|319999141|gb|AAO09362.2| transcription elongation factor GreB [Vibrio vulnificus CMCP6]
Length = 160
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K++QEL + +E RP I + +S A + GD SENA+Y K L +
Sbjct: 1 MKTKMITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + +++D + ++ FGA V + +G+ ++IVG +E G +
Sbjct: 61 RVRFLSKFLPEVKIVDYAPQQEGKVFFGAWVEIEN-EAGEVMKFRIVGPEEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D + V P G K + I + +
Sbjct: 120 SIDSPMARALLKKEVDDEVQVPTPSGIKEWFINSIEY 156
>gi|85708556|ref|ZP_01039622.1| transcription elongation factor [Erythrobacter sp. NAP1]
gi|85690090|gb|EAQ30093.1| transcription elongation factor [Erythrobacter sp. NAP1]
Length = 158
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 116/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+ ++G++++ +L+ + EERPRI+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 MEKVPMLAEGYERLTTDLKALR-EERPRIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ +LE I+RA++ID T+SGDRI FGATV+L++++ K YQIVG+ EAD G +S
Sbjct: 63 QIGDLEGKISRAQIIDPKTLSGDRIIFGATVTLLDEDDKPIK-YQIVGETEADAAKGRIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SSP+ARA+IGK++ + I V P G+K Y + ++ +I
Sbjct: 122 YSSPLARAMIGKQVEEEIEVTVPSGDKFYLVEKIEFI 158
>gi|68171284|ref|ZP_00544685.1| Prokaryotic transcription elongation factor GreA [Ehrlichia
chaffeensis str. Sapulpa]
gi|67999299|gb|EAM85947.1| Prokaryotic transcription elongation factor GreA [Ehrlichia
chaffeensis str. Sapulpa]
Length = 166
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 77/163 (47%), Positives = 114/163 (69%), Gaps = 6/163 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + P+T GF K++ EL + ERP+IIK+ISEAR GDLSENAEY AA+E Q L E
Sbjct: 5 MNARFPITKNGFAKLELELESLKH-ERPKIIKSISEARELGDLSENAEYHAARERQGLVE 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSG--DKKNYQIVGDQEADVQ 116
++ ELE+ +RAEVID+S +SGD + FGATV+ + ++ +G D+ YQIVG+ EAD+
Sbjct: 64 SKIMELESKKSRAEVIDVSNLSGDTVMFGATVTMSIYDEQTGNTDEVVYQIVGEYEADIS 123
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
++SI SP+ +L+GK+ GD++ V P G+ Y+I+++ +I
Sbjct: 124 KQMISIKSPLVVSLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 166
>gi|255533691|ref|YP_003094063.1| transcription elongation factor GreA [Pedobacter heparinus DSM
2366]
gi|255346675|gb|ACU06001.1| transcription elongation factor GreA [Pedobacter heparinus DSM
2366]
Length = 157
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 99/156 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + T G DK+++EL++ + R I +AI+EAR GDLSENAEY AAKE Q L+E
Sbjct: 1 MTEVTYYTQDGLDKLKEELQYLKTTGRQLISRAIAEARDKGDLSENAEYDAAKEAQGLHE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A++E ++ A +ID S + ++ + V + +G +YQ+V + EAD+++G +
Sbjct: 61 AKIAKMEATLSTARLIDESKLDTSKVLALSIVKIKNVKNGATMSYQLVAESEADLKTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SPIA+ L+GK +GD + P G+ +EIL++
Sbjct: 121 SVKSPIAKGLLGKSVGDTTEIEVPAGKMEFEILEIS 156
>gi|110597704|ref|ZP_01385988.1| transcription elongation factor GreA [Chlorobium ferrooxidans DSM
13031]
gi|110340611|gb|EAT59091.1| transcription elongation factor GreA [Chlorobium ferrooxidans DSM
13031]
Length = 159
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +T G++++++EL E R +++ I+EARA+GDLSENAEY AA+E Q+ E
Sbjct: 1 MSDRIYLTRDGYNRLKEELYVLVHETRREVLEKIAEARAHGDLSENAEYDAAREEQSHTE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119
R+A+LEN + A ++D + D++ +V L + + Y +V +EAD G
Sbjct: 61 ARIADLENKLASATILDPKLIKTDKVYILTSVKLRNLDDEKEIIEYTLVSSEEADTDLGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S+ SP+ RALIGK +G+ + + P G+ YEIL++
Sbjct: 121 ISVRSPVGRALIGKAVGEKVEIMVPKGKLHYEILEI 156
>gi|52426263|ref|YP_089400.1| transcription elongation factor GreB [Mannheimia succiniciproducens
MBEL55E]
gi|52308315|gb|AAU38815.1| GreA protein [Mannheimia succiniciproducens MBEL55E]
Length = 158
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G++ + QEL++ ++ERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRAGWNVLDQELKYLWKDERPKVTQAVSDAAAMGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA + L SG+ K Y+IVG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYNPKQEGKVFFGAWIELEN-ESGEIKQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D + V P G+ + + +
Sbjct: 120 SIDSPVARALIGKQIDDEVRVETPAGKVLLYVNNIWY 156
>gi|323703648|ref|ZP_08115290.1| GreA/GreB family elongation factor [Desulfotomaculum nigrificans
DSM 574]
gi|323531363|gb|EGB21260.1| GreA/GreB family elongation factor [Desulfotomaculum nigrificans
DSM 574]
Length = 158
Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T G ++++EL + +R ++ + I +A +GD+SEN+EY+ AK Q
Sbjct: 1 MKEKDVMLTVTGLKQLEEELEQLKTVKRRQVAERIKQAIEFGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A++ID + + ++ G+ V L + GD+ Y IVG EAD
Sbjct: 61 EGRILTLEKMLRNAKIIDDENLGNEVVSLGSKVRLKDLEFGDEFEYTIVGSVEADPDKNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++G+ G I+ V+ P G YEIL ++
Sbjct: 121 ISNESPVGKAILGQPKGSIVEVSVPAGVLKYEILDII 157
>gi|165975847|ref|YP_001651440.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|307256431|ref|ZP_07538213.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|165875948|gb|ABY68996.1| transcription elongation factor [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|306865061|gb|EFM96962.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 162
Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K +
Sbjct: 1 MAKSNYITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V L G+ K Y+IVG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGKE+ D I V+ P G+ I ++ +
Sbjct: 120 SIDSPVARALIGKEVDDEIKVDTPLGKSLLYINKIWY 156
>gi|325928883|ref|ZP_08190046.1| transcription elongation factor GreB [Xanthomonas perforans 91-118]
gi|325540744|gb|EGD12323.1| transcription elongation factor GreB [Xanthomonas perforans 91-118]
Length = 198
Score = 154 bits (391), Expect = 2e-36, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 84/152 (55%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L
Sbjct: 45 ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 104
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+
Sbjct: 105 SKRLEALRVVDTAPTDANAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 164
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ K + D + P G+ T+ ++ V ++
Sbjct: 165 ARALLKKRVDDEFDAHLPAGKHTFVVVSVQYV 196
>gi|32034733|ref|ZP_00134864.1| COG0782: Transcription elongation factor [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126207870|ref|YP_001053095.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae L20]
gi|126096662|gb|ABN73490.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
Length = 162
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K +
Sbjct: 1 MAKSNYITRSGWQALDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V L G+ K Y+IVG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+ SP+ARALIGKE+ D I V+ P G+ I ++ +
Sbjct: 120 SLDSPVARALIGKEVDDEIKVDTPLGKSLLYINKIWY 156
>gi|146282377|ref|YP_001172530.1| transcription elongation factor GreB [Pseudomonas stutzeri A1501]
gi|145570582|gb|ABP79688.1| transcription elongation factor GreB [Pseudomonas stutzeri A1501]
Length = 172
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L
Sbjct: 22 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 81
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ +++ FGA V+L +++ G++ Y+IVG E D++ G++SI SP+
Sbjct: 82 TKRLEKLKVVRERPSDPNKVYFGAWVTLEDED-GEQARYRIVGPDELDLRQGMISIDSPL 140
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+GK L + V P G K + ++ + +
Sbjct: 141 ARALVGKALDAEVQVQTPTGTKLWYVVAIDY 171
>gi|294341373|emb|CAZ89790.1| Transcription elongation factor greB (Transcript cleavage factor
greB) [Thiomonas sp. 3As]
Length = 188
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+ +++ EL+ ++ERP++++ +S A GD SEN +Y K+ + R+
Sbjct: 31 KNYLTPQGYARLRAELKTLVEDERPKVVETVSWAAKNGDRSENGDYIYGKKRLREIDRRI 90
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S G D++ FGATV + + G + IVG E + G +S
Sbjct: 91 RFLTKRLDIAEVVDASLQHGNDQVFFGATVRYAD-DKGAEHTITIVGIDETEPLQGKISW 149
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ GD +S+ PGG T EIL+V +
Sbjct: 150 ISPVARALLKAREGDSVSLPTPGGIATLEILEVTY 184
>gi|145640545|ref|ZP_01796129.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
gi|145642261|ref|ZP_01797826.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
gi|145273017|gb|EDK12898.1| transcription elongation factor GreB [Haemophilus influenzae
22.4-21]
gi|145275131|gb|EDK14993.1| transcription elongation factor GreB [Haemophilus influenzae
22.4-21]
Length = 162
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY +K +
Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYSKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V L + G+ K Y+IVG E +
Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFAPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK L D + V P G T I ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156
>gi|42522667|ref|NP_968047.1| hypothetical protein Bd1119 [Bdellovibrio bacteriovorus HD100]
gi|39573863|emb|CAE79040.1| greB [Bdellovibrio bacteriovorus HD100]
Length = 183
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K +T +G K++ E ERP++++ ++ A + GD SENA+YQ K + R
Sbjct: 29 NKNYITPEGLAKLKAEYHALMHVERPKLVEVVAWAASNGDRSENADYQYGKRRLREIDRR 88
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L I AE++D M G + F ATV+LV ++ GD+ YQIVG+ E D ++G +S
Sbjct: 89 VHFLTKRIEDAELVDPKQMKGTTVLFSATVTLVNED-GDEVVYQIVGEDEFDPKAGKISW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+GK+LGD + + P GE+ I V +
Sbjct: 148 KSPVARALLGKKLGDEVRIIKPAGEEFVTIENVEF 182
>gi|332877001|ref|ZP_08444754.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332685109|gb|EGJ57953.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 157
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 61/156 (39%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Query: 2 VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++K+ T++G K++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MEKVSYYTAEGMKKLRDELNQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE ++ A +ID S + ++ +TV L + + Y +V + EAD+++G +
Sbjct: 61 MKIAKLEKLVANARIIDESQLDVSKVLVLSTVKLKNLANNMQLTYTLVAESEADLKAGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+SSPI + L+GK +G+I + P G E+L++
Sbjct: 121 SVSSPIGKGLLGKSVGEIAEIKVPNGTLKMEVLEIT 156
>gi|149189239|ref|ZP_01867526.1| transcription elongation factor GreB [Vibrio shilonii AK1]
gi|148836993|gb|EDL53943.1| transcription elongation factor GreB [Vibrio shilonii AK1]
Length = 161
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K++QE + E RP + K ++ A + GD SENA+Y K L +
Sbjct: 1 MKTKLITREGYNKLKQEHDYLWNERRPEVTKIVTWAASLGDRSENADYTFNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + ++D S ++ FGA V + + G+ +++IVG +E G +
Sbjct: 61 RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIENEE-GETMHFRIVGPEEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ D + V P G+K + I + +
Sbjct: 120 SIDSPMARALLKKQVDDEVVVKTPQGDKEWFINSITY 156
>gi|260582727|ref|ZP_05850514.1| transcription elongation factor GreB [Haemophilus influenzae NT127]
gi|260094177|gb|EEW78078.1| transcription elongation factor GreB [Haemophilus influenzae NT127]
Length = 162
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V L + G+ K Y+IVG E +
Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFSPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK L D + V P G T + ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156
>gi|315127991|ref|YP_004069994.1| transcription elongation factor GreB [Pseudoalteromonas sp. SM9913]
gi|315016505|gb|ADT69843.1| transcription elongation factor GreB [Pseudoalteromonas sp. SM9913]
Length = 156
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 51/151 (33%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G DK+ +EL + ++ RP I K ++ A + GD S+NA+Y+ K L + R+ L
Sbjct: 6 ITREGLDKLNKELNYLWRDYRPEITKKVAWAASLGDRSDNADYKENKRLLRQIDSRIRFL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I +VID S ++ FGA V + + G+ K ++IVG E ++ +SI SP+
Sbjct: 66 RKRIEAVKVIDYSPQQAGKVFFGAWVEIEN-DDGETKAFRIVGPDEIYGRNDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARA++ KE+ D V P G K + I ++ +
Sbjct: 125 ARAMLKKEVDDEFQVKTPVGVKEWFINKIEY 155
>gi|15603315|ref|NP_246389.1| transcription elongation factor GreB [Pasteurella multocida subsp.
multocida str. Pm70]
gi|13431537|sp|P57802|GREB_PASMU RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|12721829|gb|AAK03534.1| GreB [Pasteurella multocida subsp. multocida str. Pm70]
Length = 158
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G++ + QEL++ ++ERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRSGWNALDQELKFLWKDERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V+L +G++K+Y+IVG E D +
Sbjct: 61 RRVRFLTKRLEVLQIVDYHPKQEGKVFFGAWVALEN-EAGEEKHYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK + D I V P G I Q+ +
Sbjct: 120 SIDSPVARALIGKSIDDEIKVETPSGLVILYINQIWY 156
>gi|88657640|ref|YP_506961.1| transcription elongation factor GreA [Ehrlichia chaffeensis str.
Arkansas]
gi|88599097|gb|ABD44566.1| transcription elongation factor GreA [Ehrlichia chaffeensis str.
Arkansas]
Length = 162
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 77/163 (47%), Positives = 114/163 (69%), Gaps = 6/163 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + P+T GF K++ EL + ERP+IIK+ISEAR GDLSENAEY AA+E Q L E
Sbjct: 1 MNARFPITKNGFAKLELELESLKH-ERPKIIKSISEARELGDLSENAEYHAARERQGLVE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSG--DKKNYQIVGDQEADVQ 116
++ ELE+ +RAEVID+S +SGD + FGATV+ + ++ +G D+ YQIVG+ EAD+
Sbjct: 60 SKIMELESKKSRAEVIDVSNLSGDTVMFGATVTMSIYDEQTGNTDEVVYQIVGEYEADIS 119
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
++SI SP+ +L+GK+ GD++ V P G+ Y+I+++ +I
Sbjct: 120 KQMISIKSPLVVSLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 162
>gi|121535049|ref|ZP_01666866.1| transcription elongation factor GreA [Thermosinus carboxydivorans
Nor1]
gi|121306299|gb|EAX47224.1| transcription elongation factor GreA [Thermosinus carboxydivorans
Nor1]
Length = 159
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T G KI+Q+L + R + + I +A +GD+SEN+EY+ AK Q
Sbjct: 1 MAEKQTILTVDGLKKIEQKLEHLKSVRRREVAERIKQAIEFGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG + LE ++ A+VID +S D + G+TV L + GD+ Y +VG EAD
Sbjct: 61 EGEILTLEKMLRNAKVIDEGEISTDTVTIGSTVVLKDLEFGDELEYTLVGSAEADPMEFK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++G+++G ++ VN P G Y+IL++
Sbjct: 121 ISNESPVGQAIMGQKVGSVVEVNVPAGILKYKILEIK 157
>gi|294673245|ref|YP_003573861.1| transcription elongation factor GreA family protein [Prevotella
ruminicola 23]
gi|294472262|gb|ADE81651.1| transcription elongation factor GreA family protein [Prevotella
ruminicola 23]
Length = 155
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 56/151 (37%), Positives = 86/151 (56%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ EL+ + + P AISEAR GDLSEN EY AAK Q GR++
Sbjct: 3 YMSQEGWDKLVAELKQLETVDLPACKDAISEARDKGDLSENFEYHAAKREQGRLLGRISF 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ A VID S + D + + V + N+ K Y I EA+++ G +SI SP
Sbjct: 63 LQKVLENARVIDTSLLGKDCVGLLSKVEMTNLNNNAKMTYTIASPHEANLREGKISIKSP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+AL+ K++GD++ V P G +I +
Sbjct: 123 IAQALLNKKVGDVVEVRVPAGMVKLKIENIT 153
>gi|228993117|ref|ZP_04153039.1| Transcription elongation factor greA [Bacillus pseudomycoides DSM
12442]
gi|229006713|ref|ZP_04164347.1| Transcription elongation factor greA [Bacillus mycoides Rock1-4]
gi|228754574|gb|EEM03985.1| Transcription elongation factor greA [Bacillus mycoides Rock1-4]
gi|228766576|gb|EEM15217.1| Transcription elongation factor greA [Bacillus pseudomycoides DSM
12442]
Length = 161
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 60/152 (39%), Positives = 93/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 10 YPMTQEGKQKLENEIEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I+ + + G TV E GD++ Y IVG EAD G +S S
Sbjct: 70 QLENMIRNAVIIEDNGEESTVVTLGKTVVFKELPDGDEEAYTIVGSAEADPFEGRISNDS 129
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 130 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 161
>gi|15896445|ref|NP_349794.1| transcription elongation factor GreA [Clostridium acetobutylicum
ATCC 824]
gi|25453001|sp|Q97EB6|GREA_CLOAB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|15026268|gb|AAK81134.1|AE007815_4 Transcription elongation factor, greA [Clostridium acetobutylicum
ATCC 824]
gi|325510603|gb|ADZ22239.1| transcription elongation factor GreA [Clostridium acetobutylicum EA
2018]
Length = 158
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 91/154 (59%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K +T KG K+++EL + + +R I + I A ++GDLSEN+EY AK Q EGR
Sbjct: 5 KKYVITYKGVKKLEEELEYLKTTKRKEITEKIKVALSFGDLSENSEYDEAKNDQAFVEGR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A++EN++ A VID S + D ++ G+ V + + ++ + IVG EAD +S
Sbjct: 65 IAQIENMLKNANVIDESELKNDVVSVGSKVMVKDYQFDEEIEFSIVGSAEADPIENKISN 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ALIGK++GD I VN P G Y+IL +
Sbjct: 125 ESPVGSALIGKKVGDEIEVNVPDGVDKYKILAIK 158
>gi|152972284|ref|YP_001337430.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238896873|ref|YP_002921618.1| transcription elongation factor GreB [Klebsiella pneumoniae
NTUH-K2044]
gi|262045242|ref|ZP_06018268.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330012470|ref|ZP_08307384.1| transcription elongation factor GreB [Klebsiella sp. MS 92-3]
gi|150957133|gb|ABR79163.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|238549200|dbj|BAH65551.1| transcription elongation factor [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|259037452|gb|EEW38697.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328533821|gb|EGF60500.1| transcription elongation factor GreB [Klebsiella sp. MS 92-3]
Length = 157
Score = 154 bits (391), Expect = 3e-36, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 93/152 (61%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++K++QE+ + ++ERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYEKLKQEMDYLWRQERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +++D S ++ FGA V + + GD K ++IVG E + +SI SP+
Sbjct: 66 TKCLEQLKIVDYSPQQEGKVFFGAWVEIEN-DEGDIKRFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ VN P GE ++ + ++ ++
Sbjct: 125 ARALLKKEVGDLAIVNTPAGEASWYVNEIEYV 156
>gi|229088223|ref|ZP_04220162.1| Transcription elongation factor greA [Bacillus cereus Rock3-44]
gi|228695096|gb|EEL48133.1| Transcription elongation factor greA [Bacillus cereus Rock3-44]
Length = 161
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 60/152 (39%), Positives = 94/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 10 YPMTLEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I+ + + G TV+ E GD++ Y IVG EAD G +S S
Sbjct: 70 QLENMIRNAVIIEDTGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDS 129
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 130 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 161
>gi|326693573|ref|ZP_08230578.1| transcription elongation factor greA [Leuconostoc argentinum KCTC
3773]
Length = 160
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 64/159 (40%), Positives = 98/159 (61%), Gaps = 3/159 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T++G +K+Q EL +RP I I AR+YGDLSEN+EYQ+AK+ Q
Sbjct: 1 MSEEKVFPMTAEGREKLQAELEDLISNQRPEITNRIQIARSYGDLSENSEYQSAKDEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ L+ +I AE+ID + + D ++ G TV+ E + + Y IVG E+D +G
Sbjct: 61 VEGRILTLKKMIENAEIIDPNATASDEVSLGKTVTFKELPDEEPETYAIVGSTESDPLAG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+S S +A AL+GK++GD ++V P G+ EIL+V
Sbjct: 121 KISNESAMAVALLGKKVGDKVAVPLPSGDSIEVEILKVE 159
>gi|325274307|ref|ZP_08140416.1| transcription elongation factor GreB [Pseudomonas sp. TJI-51]
gi|324100565|gb|EGB98302.1| transcription elongation factor GreB [Pseudomonas sp. TJI-51]
Length = 157
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +TS+G +++EL + RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTNIITSEGHAALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +V+ S ++ FGA V + + G+ ++IVG E ++ +S
Sbjct: 61 RVRYLRKRLEDVKVVAYSPEQEGKVFFGAWVEIEN-DDGETMKFRIVGYDEIYGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ K+ GD + V+ P GE T+ + + +
Sbjct: 120 IDSPMARALLKKQEGDEVLVHTPTGEATWYVNSISY 155
>gi|241762247|ref|ZP_04760329.1| transcription elongation factor GreA [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|260753827|ref|YP_003226720.1| transcription elongation factor GreA [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|283856510|ref|YP_163350.2| transcription elongation factor GreA [Zymomonas mobilis subsp.
mobilis ZM4]
gi|7387716|sp|O50237|GREA_ZYMMO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|3820585|gb|AAC70357.1| transcription elongation factor [Zymomonas mobilis subsp. mobilis
ZM4]
gi|241373294|gb|EER62913.1| transcription elongation factor GreA [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|258553190|gb|ACV76136.1| transcription elongation factor GreA [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|283775514|gb|AAV90239.2| transcription elongation factor GreA [Zymomonas mobilis subsp.
mobilis ZM4]
Length = 158
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 73/156 (46%), Positives = 105/156 (67%), Gaps = 2/156 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KIP+ +G + EL ERP+II AI EARA+GDLSENAEY AAKE Q E
Sbjct: 5 EKIPMLIEGQQMLMDELARL-HAERPKIIDAIEEARAHGDLSENAEYHAAKERQGQVEAM 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ++E ++RA VID T+SGD++ FGATV L++++ K YQIVG EA+ + G +S
Sbjct: 64 IGDIEGKLSRALVIDPKTLSGDKVIFGATVHLLDEDDKPVK-YQIVGQTEANAKGGRISY 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ RALIG+++ D I V+ P G++ Y I ++ +I
Sbjct: 123 NSPLGRALIGRKVDDEIEVSVPSGDRYYLISKIEFI 158
>gi|239817299|ref|YP_002946209.1| transcription elongation factor GreB [Variovorax paradoxus S110]
gi|239803876|gb|ACS20943.1| transcription elongation factor GreB [Variovorax paradoxus S110]
Length = 190
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL EERP++++A+ A GD SEN +Y K+ + R+
Sbjct: 30 KNYMTPAGYARLRDELLQLMDEERPKVVEAVHWAAKNGDRSENGDYLYGKKRLREIDRRI 89
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV D S G D++ FGATV V+ +GD+++ I+G EAD VS
Sbjct: 90 RFLTKRLEIAEVTDPSVHHGSDQVFFGATVRYVD-ETGDERSVTILGIDEADSAQSQVSW 148
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ GD++ + PGG E+L V +
Sbjct: 149 ISPIARALLKSREGDVVKLVTPGGAHEVELLSVSY 183
>gi|254507342|ref|ZP_05119478.1| transcription elongation factor GreB [Vibrio parahaemolyticus 16]
gi|219549802|gb|EED26791.1| transcription elongation factor GreB [Vibrio parahaemolyticus 16]
Length = 160
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +GFD++++EL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTNLITREGFDRLKKELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + + +V+D S ++ FGA V + ++ GD K+++IVG E G +
Sbjct: 61 RVRYLRKRLEQVKVVDYSPQQEGKVFFGAWVEIENED-GDVKSFRIVGPDEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D SV P G K + + ++ +
Sbjct: 120 SIDSPMARALLKKEVDDEFSVKTPDGFKDWFVNRIDY 156
>gi|148263835|ref|YP_001230541.1| transcription elongation factor GreB [Geobacter uraniireducens Rf4]
gi|146397335|gb|ABQ25968.1| transcription elongation factor GreB [Geobacter uraniireducens Rf4]
Length = 170
Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats.
Identities = 56/152 (36%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G ++ EL + + ERPR+ +A+S+A A GD SENAEY K+ + R+
Sbjct: 14 YITPEGAKCLRDELDYLWKVERPRVTQAVSDAAAEGDRSENAEYIYGKKRLREIDRRVRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V++ +I FGA V L E GD+ Y+IVG E DV G +S+ SP
Sbjct: 74 LIKRLDALTVVNNQPERQGKIFFGAWVRL-ETEDGDEVVYRIVGPDEFDVAKGFISMDSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ RAL+GK+ GD + V P G T+ +L + +
Sbjct: 133 VGRALLGKQEGDEVVVRRPAGATTFTVLDISY 164
>gi|119357650|ref|YP_912294.1| transcription elongation factor GreA [Chlorobium phaeobacteroides
DSM 266]
gi|166200656|sp|A1BHJ3|GREA_CHLPD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|119354999|gb|ABL65870.1| transcription elongation factor GreA [Chlorobium phaeobacteroides
DSM 266]
Length = 159
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 61/156 (39%), Positives = 102/156 (65%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +T G++++++EL ++R +++ I+EARA+GDLSENAEY AA+E Q+L E
Sbjct: 1 MNDRIYLTRDGYNRLKEELYVLVHQKRKEVLEKIAEARAHGDLSENAEYDAAREEQSLTE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKN-SGDKKNYQIVGDQEADVQSGL 119
+A+LEN ++ A ++D + D++ +V L + + G+ Y +V +EAD G
Sbjct: 61 AHIADLENKLSTATILDPKQVKTDKVYILTSVKLRDLDKEGEIIEYTLVSSEEADTDLGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S+ SP+ RALIGK +G+ + + P GE YEIL++
Sbjct: 121 ISVRSPVGRALIGKTVGEKVQIMVPKGELHYEILEI 156
>gi|259046507|ref|ZP_05736908.1| transcription elongation factor GreA [Granulicatella adiacens ATCC
49175]
gi|259036672|gb|EEW37927.1| transcription elongation factor GreA [Granulicatella adiacens ATCC
49175]
Length = 159
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T +G K++ EL + +R I++ I AR+YGDLSEN+EY++AK+ Q
Sbjct: 1 MTEKVFPMTLEGKAKLEAELEELKVVKRKEIVERIKIARSYGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR++ LE +I AE+ID + + D ++ G V+ +E GD++ Y IVG EA+ G
Sbjct: 61 EGRISTLEKMIRFAEIIDDNNVEKDIVSLGRKVTFIELPDGDEETYTIVGSAEANPIEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ +IGK+L + + + PGGE I+ +
Sbjct: 121 ISNDSPIAKGIIGKKLNEEVVIPTPGGEMKIRIIDIQ 157
>gi|189347164|ref|YP_001943693.1| transcription elongation factor GreA [Chlorobium limicola DSM 245]
gi|238692161|sp|B3EE12|GREA_CHLL2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189341311|gb|ACD90714.1| transcription elongation factor GreA [Chlorobium limicola DSM 245]
Length = 159
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 98/156 (62%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +T G++++++EL + R +++ I+EAR++GDLSENAEY AA+E Q+ E
Sbjct: 1 MSDRIYLTRDGYNRLKEELYVLIHQTRKEVLEKIAEARSHGDLSENAEYDAAREQQSQTE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGL 119
R+A+LEN ++ A ++D + D++ +V L D+ Y +V +EAD G
Sbjct: 61 ARIADLENKLSTATILDPKLIKTDKVYILTSVKLKNLQVEDEVIEYTLVSSEEADTDLGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S+ SP+ R+LIGK +GD + + P GE +EIL +
Sbjct: 121 ISVRSPVGRSLIGKTVGDKVHITVPKGELHFEILDI 156
>gi|163802294|ref|ZP_02196188.1| transcription elongation factor GreA [Vibrio sp. AND4]
gi|159173823|gb|EDP58637.1| transcription elongation factor GreA [Vibrio sp. AND4]
Length = 157
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+TS+G +++ + R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTSRG-EQLLRTELERLLKLRPQISQAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++TM ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEFKLSVAQVIDVTTMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD + + PGG K +EI V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157
>gi|94309804|ref|YP_583014.1| transcription elongation factor GreB [Cupriavidus metallidurans
CH34]
gi|93353656|gb|ABF07745.1| Transcription elongation factor [Cupriavidus metallidurans CH34]
Length = 186
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T+ G+ +++ EL ERP I++ +S A + GD SEN +Y K+ + R+
Sbjct: 29 KNYITAAGYKRLRDELMHLIDVERPDIVQIVSWAASNGDRSENGDYLYGKKRMREIDRRI 88
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + +AEV+D S D+I FGATV+ + SG++ IVG E D+ S VS
Sbjct: 89 RFLTRRLDKAEVVDPSMQGDNDQIFFGATVTYANQ-SGEETTITIVGMDEVDLDSNHVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA+ALI GD + + P G + +IL+V +
Sbjct: 148 ISPIAKALIKAREGDTVPLRTPAGIEQIDILEVRY 182
>gi|311107031|ref|YP_003979884.1| transcription elongation factor GreB [Achromobacter xylosoxidans
A8]
gi|310761720|gb|ADP17169.1| transcription elongation factor GreB [Achromobacter xylosoxidans
A8]
Length = 183
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+++++ EL ERP +++ +S A + GD SEN +Y K+ + RM
Sbjct: 28 KNYMTPGGYERLRSELTHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRM 87
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D + D++ FGAT L +G++ N IVG EA+ +G +S
Sbjct: 88 RFLTKRLDIAEVVDPAAQPNRDQVFFGAT-VLYSDKAGEEHNVTIVGVDEAEPLAGKISW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARALI + GD + + PGG + +IL V +
Sbjct: 147 ISPVARALIKAKEGDTVVLRTPGGIEELDILDVSY 181
>gi|205354873|ref|YP_002228674.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|205274654|emb|CAR39708.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|326630019|gb|EGE36362.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
Length = 157
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ ++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D S ++ F A V + + GD ++IVG E + +SI SP+
Sbjct: 66 TKCMENLKIVDYSPQQEGKVFFSAWVEIEN-DDGDTLKFRIVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ KE+GD+ VN P GE + + + ++
Sbjct: 125 ARALLKKEVGDLAVVNTPVGEANWYVNAIEYV 156
>gi|108805000|ref|YP_644937.1| transcription elongation factor GreA [Rubrobacter xylanophilus DSM
9941]
gi|108766243|gb|ABG05125.1| transcription elongation factor GreA [Rubrobacter xylanophilus DSM
9941]
Length = 154
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF K+Q+EL++ + R + + I +AR +GD+SEN+EY AK Q L E R++EL
Sbjct: 1 MTPEGFAKLQEELKYLTEVRRKEVAERIRQAREFGDISENSEYDDAKNEQGLLERRISEL 60
Query: 67 ENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ + A+++D S+ + G V+L G ++ +QIVG EAD SG +S +SP
Sbjct: 61 QRRLRNAKIVDPASSAEEGAVDLGTRVTLRVVGDGRERTFQIVGANEADPASGKLSHASP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +AL+ + +G+ + V+ P G YEI+ V
Sbjct: 121 VGKALLRRRVGEKVRVSTPRGATEYEIVSVE 151
>gi|254241524|ref|ZP_04934846.1| transcription elongation factor GreB [Pseudomonas aeruginosa 2192]
gi|126194902|gb|EAZ58965.1| transcription elongation factor GreB [Pseudomonas aeruginosa 2192]
Length = 168
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 90/151 (59%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL P++ +A+SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGAARLRAELHELWHVRCPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ +R+ FGA V+L +++ G++ Y+IVG E D+++ +SI SP+
Sbjct: 75 RKRLENLKVVGERPADPNRVYFGAWVTLEDED-GEQARYRIVGPDELDLRNNQISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+GKEL + V P GEK + ++++ +
Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEIEY 164
>gi|302876582|ref|YP_003845215.1| transcription elongation factor GreA [Clostridium cellulovorans
743B]
gi|307687257|ref|ZP_07629703.1| transcription elongation factor GreA [Clostridium cellulovorans
743B]
gi|302579439|gb|ADL53451.1| transcription elongation factor GreA [Clostridium cellulovorans
743B]
Length = 158
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 89/155 (57%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T +G K++ EL + + R I + I A ++GDLSEN+EY AK Q EG
Sbjct: 3 SKKYVMTYEGLKKLEDELEFLKTVRRNDIKEKIKVALSFGDLSENSEYDEAKNEQAFVEG 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++A+LE ++ + V+D + + GD + G V + + +SGD Y IVG EAD +S
Sbjct: 63 KIAQLEAMLKKVTVVDETDIQGDIVGIGTKVKVKDIDSGDVDVYSIVGSAEADPLEFKIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +A++GK++G+ + V P G EIL++
Sbjct: 123 HESPVGKAMLGKKVGETVDVAVPDGTIKLEILEIT 157
>gi|219872157|ref|YP_002476532.1| transcription elongation factor GreB [Haemophilus parasuis SH0165]
gi|219692361|gb|ACL33584.1| transcription elongation factor GreB [Haemophilus parasuis SH0165]
Length = 159
Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K +
Sbjct: 1 MAKSNYITRSGWQVLDQELKYLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V L + G+ K Y+IVG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYHPTQEGKVFFGAWVELENEE-GEIKQYRIVGCDEFDPAKQWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D I V P G+ T I ++ +
Sbjct: 120 SIDSPVARALIGKQIDDEIQVETPVGKVTLYINKIWY 156
>gi|303249748|ref|ZP_07335952.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307251936|ref|ZP_07533837.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|302651315|gb|EFL81467.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306860628|gb|EFM92640.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
Length = 162
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K +
Sbjct: 1 MTKSNYITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V L G+ K Y+IVG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGKE+ D I V+ P G+ I ++ +
Sbjct: 120 SIDSPVARALIGKEVDDEIKVDTPLGKSLLYINKIWY 156
>gi|149277461|ref|ZP_01883602.1| transcription elongation factor [Pedobacter sp. BAL39]
gi|149231694|gb|EDM37072.1| transcription elongation factor [Pedobacter sp. BAL39]
Length = 157
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 97/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + T G DK+++EL + R I KAI+EAR GDLSENAEY AAKE Q L+E
Sbjct: 1 MTEVTYYTQDGLDKLKEELHHMKTTGRQLISKAIAEARDKGDLSENAEYDAAKEAQGLHE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE ++ A +ID S + ++ + V + +G +YQ+V + EAD+++G +
Sbjct: 61 AKIAKLETTLSTARLIDESKLDTSKVLALSIVKIKNVKNGATMSYQLVAESEADLKTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SPIA+ L+GK +GD + P G+ +EIL++
Sbjct: 121 SVKSPIAQGLLGKSVGDKTEIQVPAGKIEFEILEIS 156
>gi|260913554|ref|ZP_05920031.1| transcription elongation factor GreB [Pasteurella dagmatis ATCC
43325]
gi|260632330|gb|EEX50504.1| transcription elongation factor GreB [Pasteurella dagmatis ATCC
43325]
Length = 164
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T G++ + QEL++ ++ERP++ +A+S+A A GD SENAEY K +
Sbjct: 6 MVKSNYITRTGWNALDQELKFLWKDERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 65
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V+L + G++K Y+IVG E D +
Sbjct: 66 RRVRFLMKRLEVLQIVDYNPKQEGKVFFGAWVALENEE-GEEKQYRIVGCDEFDPAKNWI 124
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK + D I VN P G + + ++ +
Sbjct: 125 SIDSPVARALIGKAVDDEIKVNTPSGVVIFYVNRIWY 161
>gi|261250558|ref|ZP_05943133.1| transcription elongation factor GreB [Vibrio orientalis CIP 102891]
gi|260939127|gb|EEX95114.1| transcription elongation factor GreB [Vibrio orientalis CIP 102891]
Length = 158
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+D++++EL + +E+RP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTNLITREGYDRLKKELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + + +V+D S ++ FGA V + ++ GD K ++IVG E G +
Sbjct: 61 RVRYLRKRLEQVKVVDYSPQQEGKVFFGAWVEIENED-GDTKAFRIVGPDEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D SV P G K + + + +
Sbjct: 120 SIDSPMARALLKKEVDDEFSVKTPEGFKEWFVNSIRY 156
>gi|149378112|ref|ZP_01895832.1| transcription elongation factor GreB [Marinobacter algicola DG893]
gi|149357597|gb|EDM46099.1| transcription elongation factor GreB [Marinobacter algicola DG893]
Length = 156
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 96/156 (61%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ +T +G+ ++QQEL + ++ERP + K + A + GD SENA+YQ K+ +
Sbjct: 1 MNTNVITPEGYAELQQELDYLWRKERPEVTKKVQWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L N +++ V++ +++ ++ FGA V+LV+++ ++++VG E + VS
Sbjct: 61 RVRYLRNRLSKLRVVEYNSVQEGKVYFGAWVTLVDED-EKTLSFRMVGPDEIYGKKNYVS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+++P+A+A +GK +GD + V P ++ ++I ++ +
Sbjct: 120 VNAPVAKACLGKSVGDTVVVRTPENQREWDISKIEY 155
>gi|307249608|ref|ZP_07531594.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306858306|gb|EFM90376.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
Length = 162
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + QEL++ ++ERP++ A+SEA A GD SENAEY K +
Sbjct: 1 MAKSNYITRSGWQTLDQELKFLWKDERPKVTHAVSEAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V L G+ K Y+IVG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGKE+ D I V+ P G+ I ++ +
Sbjct: 120 SIDSPVARALIGKEVDDEIKVDTPLGKSLLYINKIWY 156
>gi|164686645|ref|ZP_02210673.1| hypothetical protein CLOBAR_00238 [Clostridium bartlettii DSM
16795]
gi|164604374|gb|EDQ97839.1| hypothetical protein CLOBAR_00238 [Clostridium bartlettii DSM
16795]
Length = 158
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K +T +G++K+++EL + + +R + + + A ++GDLSENAEY AK Q
Sbjct: 1 MVEKQELLTQEGYNKLEEELEYLKAVKRKEVAERLKVAISFGDLSENAEYDEAKNEQAKL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E ++ +L+ + +A +ID S + + + G+ V + + + ++ Y IVG EAD G
Sbjct: 61 EEQILKLDEKLRKAVIIDESQIDLNIVTVGSIVKVFDFDFDEEVEYVIVGSAEADPFEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +AL+G +G+ + V P G +++L++
Sbjct: 121 ISNESPVGKALLGARVGETVEVQVPDGVSKFKVLEIR 157
>gi|220927851|ref|YP_002504760.1| transcription elongation factor GreA [Clostridium cellulolyticum
H10]
gi|219998179|gb|ACL74780.1| transcription elongation factor GreA [Clostridium cellulolyticum
H10]
Length = 158
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 89/155 (57%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ +T +G K+++EL + + +R + + I +A ++GD+SEN+EY AK Q EG
Sbjct: 3 AKEVVLTYEGLKKLEEELEFLRGTKRKEVAERIKQALSFGDISENSEYDEAKNEQAQVEG 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LE+++ A +ID ++ D ++ G+ V + + ++ Y IVG EA+ +S
Sbjct: 63 RIVQLESMLKHARIIDEDEVNTDVVSIGSKVRIFDIEFDEEVEYLIVGSTEANPLKSKIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ALIG G+ + V P G ++IL++
Sbjct: 123 NESPVGAALIGHTKGETVEVQVPDGVLKFKILEIS 157
>gi|269792851|ref|YP_003317755.1| transcription elongation factor GreA [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100486|gb|ACZ19473.1| transcription elongation factor GreA [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 164
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 97/154 (62%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+++ +T +G++K++QEL + + R I + EARA+GDLSENAEY AAKE Q E R
Sbjct: 9 EQVIMTREGYEKLKQELASLRGDGRSEIASKLEEARAFGDLSENAEYHAAKEEQEKLESR 68
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LE +++A+V++ S + ++ GATV L + ++G+ Y +VG +EAD ++ +S
Sbjct: 69 IMWLEYQLSKAKVVESSDIDTSTVSLGATVQLRDLDTGNTYTYVLVGSEEADPKANRISA 128
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +A+IG+ G+ + V P G + I ++
Sbjct: 129 QSPVGKAIIGRAEGEEVIVRVPKGTRHLRIERIS 162
>gi|227538368|ref|ZP_03968417.1| transcription elongation factor GreA [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241883|gb|EEI91898.1| transcription elongation factor GreA [Sphingobacterium spiritivorum
ATCC 33300]
Length = 157
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 63/156 (40%), Positives = 101/156 (64%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +G DK+++EL + E R I KAI+EAR GDLSENAEY AAKE Q L+E
Sbjct: 1 MAEVTYYNQEGLDKLKEELHHLKTEGRANIAKAIAEARDKGDLSENAEYDAAKEAQGLHE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE++++ A +ID S + ++ + V + K +G + YQ+V + EAD++SG +
Sbjct: 61 AKIAKLEDVLSSARLIDESKLDTSKVLALSIVRIKNKKNGSEMTYQLVSETEADLKSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SPIA+ L+GK GD ++ P G+ +EI+++
Sbjct: 121 SVKSPIAQGLLGKSKGDTATIEVPAGKIEFEIMEIS 156
>gi|209694181|ref|YP_002262109.1| transcription elongation factor GreA [Aliivibrio salmonicida
LFI1238]
gi|208008132|emb|CAQ78274.1| transcription elongation factor GreA [Aliivibrio salmonicida
LFI1238]
Length = 157
Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 108/158 (68%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T +G ++ EL + RP I KAI EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MDKVPMTIRGEKLLRDELEVLLK-RRPVISKAIGEARELGDLKENAEYHAAREDQGICEA 59
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M + ++ FGATV+L++ ++ DK YQIV D EA+++ G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMTNTGKVIFGATVTLLDVDTEDKVKYQIVADDEANIKEGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK + D +S+ PGG K +EI V +I
Sbjct: 120 SVNSPIARGLIGKLVEDEVSIRTPGGTKEFEIDAVEYI 157
>gi|323527030|ref|YP_004229183.1| transcription elongation factor GreB [Burkholderia sp. CCGE1001]
gi|323384032|gb|ADX56123.1| transcription elongation factor GreB [Burkholderia sp. CCGE1001]
Length = 189
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL EERP +++ +S A + GD SEN +Y K + R+
Sbjct: 29 KNYITPAGYRRMRDELLHLIDEERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S D++ FGATV G++ IVG E D+ G VS
Sbjct: 89 RFLTKRLDLAEVVDSSKQENVDQVFFGATVEYA-TEDGEEHTVTIVGIDEVDLDVGHVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ ++GD +++ P G + +IL V +
Sbjct: 148 ISPIARALLKAKVGDTVTLYTPAGPQPIDILDVKY 182
>gi|332520122|ref|ZP_08396586.1| transcription elongation factor GreA [Lacinutrix algicola 5H-3-7-4]
gi|332044681|gb|EGI80875.1| transcription elongation factor GreA [Lacinutrix algicola 5H-3-7-4]
Length = 157
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 98/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T++G K+++EL+ + ER + AI+EAR GDLSENAEY AAKE Q + E
Sbjct: 1 MSKVSYYTAEGLKKLREELKHLKDVERVKASNAIAEARDKGDLSENAEYDAAKEAQGMLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+++LE+ + A +ID S M +I + V + + +G + NY +V D EAD+ SG +
Sbjct: 61 MRISKLEDQLAGARIIDESQMDTSKILVLSKVKIKNQTNGMEMNYTLVADGEADLASGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S++SPI + L+GK +GD+ ++ P G ++I+++
Sbjct: 121 SVNSPIGKGLLGKSVGDVAEISVPSGIMKFDIIEIS 156
>gi|260583976|ref|ZP_05851724.1| transcription elongation factor GreA [Granulicatella elegans ATCC
700633]
gi|260158602|gb|EEW93670.1| transcription elongation factor GreA [Granulicatella elegans ATCC
700633]
Length = 159
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +G K++ EL + +R I++ I AR+YGDLSEN+EY++AK+ Q
Sbjct: 1 MTEKLYPMTLEGKAKLEAELEELKVVKRKEIVERIKIARSYGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE +I AE+ID + + D ++ G ++ +E G++++Y IVG EA+ G
Sbjct: 61 EGRITTLEKMIRFAEIIDDNNVEKDVVSLGRKITFIELPDGEEESYTIVGSAEANPIEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ +IGK+L D + + PGG+ +I ++
Sbjct: 121 ISNDSPIAKGIIGKKLNDEVVIQTPGGDMKVKITKIE 157
>gi|146307584|ref|YP_001188049.1| transcription elongation factor GreB [Pseudomonas mendocina ymp]
gi|145575785|gb|ABP85317.1| transcription elongation factor GreB [Pseudomonas mendocina ymp]
Length = 165
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 94/151 (62%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ +++ FGA V++ +++ G++ Y+IVG E D++ GL+SI SP+
Sbjct: 75 TKRLEKLKVVSDRPSDPNKVYFGAWVTIEDED-GEQSRYRIVGPDELDLKQGLISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+GK L + V++P GEKT I+++ +
Sbjct: 134 ARALVGKPLDAEVRVHSPSGEKTCYIVEIEY 164
>gi|86146554|ref|ZP_01064876.1| transcription elongation factor GreB [Vibrio sp. MED222]
gi|85835611|gb|EAQ53747.1| transcription elongation factor GreB [Vibrio sp. MED222]
Length = 160
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K++ E E+RP I K ++ A + GD SENA+Y K L +
Sbjct: 1 MKTKLITREGYNKLKAEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + ++D S ++ FGA V + + G+ K ++IVG +E G +
Sbjct: 61 RVRFLRKFLPDVTIVDYSPQQEGKVFFGAWVEIEN-DDGEIKKFRIVGPEEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE D +V P G+K + I + +
Sbjct: 120 SIDSPMARALLKKETDDEFTVTTPEGDKEWFINSIRY 156
>gi|307730694|ref|YP_003907918.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
gi|307585229|gb|ADN58627.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
Length = 206
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL ERP ++K +S A + GD SEN +Y K + R+
Sbjct: 46 KNYITPAGYRRMRDELLQLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 105
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S D++ FGATV G++ IVG E D+ G VS
Sbjct: 106 RFLTKRLDLAEVVDSSKQENVDQVFFGATVEYA-TEDGEEHTVTIVGIDEVDLDIGHVSW 164
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ ++GD +++ P G + +IL V +
Sbjct: 165 ISPIARALLKGKVGDTVTLYTPAGPQPIDILDVKY 199
>gi|255657691|ref|ZP_05403100.1| transcription elongation factor GreA [Mitsuokella multacida DSM
20544]
gi|260849878|gb|EEX69885.1| transcription elongation factor GreA [Mitsuokella multacida DSM
20544]
Length = 156
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 92/157 (58%), Gaps = 3/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T +G++K+ ++L + + +R I + + A A GDLSEN+EY AK Q
Sbjct: 1 MADKQVMLTEEGYNKLVEKLNYLKSVKRIEIAQRLKAAIALGDLSENSEYDDAKNEQAFL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG + +L I + +I +GD + G+ V++ + GD++ + +VG EAD G
Sbjct: 61 EGEIQDLTAKIRNSHII--KAGAGDVVQMGSKVTVKDIEFGDEETFMLVGSTEADPDEGK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +AL+G++ G +I V+AP G YEIL +
Sbjct: 119 ISNESPLGQALLGQKSGSVIDVHAPAGIIKYEILDIK 155
>gi|194334369|ref|YP_002016229.1| transcription elongation factor GreA [Prosthecochloris aestuarii
DSM 271]
gi|238693346|sp|B4S9B2|GREA_PROA2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|194312187|gb|ACF46582.1| transcription elongation factor GreA [Prosthecochloris aestuarii
DSM 271]
Length = 160
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 100/157 (63%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +T +G+++++ EL + R +++ I+EARA+GDLSENAEY+AA+E Q E
Sbjct: 1 MSDRIYLTKQGYNRMRDELNLLKTVVRKEVLEKIAEARAHGDLSENAEYEAAREQQAQME 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKN--SGDKKNYQIVGDQEADVQSG 118
++ +LEN +TRA ++D + DR+ +V L + + Y +V +EAD G
Sbjct: 61 SKIVDLENKLTRASILDPKQIRTDRVYILTSVKLRNLDETDDEIIEYTLVSSEEADTDQG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S+ SP+ +ALIGK +G+ + ++ P GE YEIL++
Sbjct: 121 KISVRSPVGKALIGKAVGEKVQIHVPKGELHYEILEI 157
>gi|258623151|ref|ZP_05718162.1| transcription elongation factor GreA [Vibrio mimicus VM573]
gi|258625329|ref|ZP_05720229.1| transcription elongation factor GreA [Vibrio mimicus VM603]
gi|258582395|gb|EEW07244.1| transcription elongation factor GreA [Vibrio mimicus VM603]
gi|258584571|gb|EEW09309.1| transcription elongation factor GreA [Vibrio mimicus VM573]
Length = 158
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 71/159 (44%), Positives = 117/159 (73%), Gaps = 2/159 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++K+P+T +G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MMEKVPMTVRG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICE 59
Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
++ ++E ++ A+VID++ M ++ FG+TV++++ N+ ++K YQIVGD EAD++SG
Sbjct: 60 AQIRDIEYKLSVAQVIDVTGMDNSGKVIFGSTVTVIDVNTDEEKTYQIVGDDEADIKSGR 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIAR LIGK GD +++ PGG+K +EI +V ++
Sbjct: 120 ISVNSPIARGLIGKFEGDEVAIATPGGDKVFEIDRVEYL 158
>gi|78188473|ref|YP_378811.1| transcription elongation factor GreA [Chlorobium chlorochromatii
CaD3]
gi|123770883|sp|Q3ATA7|GREA_CHLCH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|78170672|gb|ABB27768.1| GreA/GreB family elongation factor [Chlorobium chlorochromatii
CaD3]
Length = 160
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 101/156 (64%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D+I +T+ G++++++EL + R +++ I+EARA+GDLSENAEY AA+E Q+ E
Sbjct: 1 MNDRIYLTNDGYNRLKEELYVLVHQTRKEVLEKIAEARAHGDLSENAEYDAAREEQSQIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS-GDKKNYQIVGDQEADVQSGL 119
R+ +LE+ ++ A ++D + D++ +V L ++ + Y +V +EAD +G
Sbjct: 61 ARIGDLESKLSAATILDPKQIKTDKVYILTSVKLRNLDNPDEIIEYTLVSSEEADTDAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S+ SP+ R+LIGK +G +++ P GE YEIL++
Sbjct: 121 ISVRSPVGRSLIGKTVGAKVTIVVPKGELHYEILEI 156
>gi|229846659|ref|ZP_04466767.1| transcription elongation factor GreB [Haemophilus influenzae
7P49H1]
gi|229810752|gb|EEP46470.1| transcription elongation factor GreB [Haemophilus influenzae
7P49H1]
gi|309972280|gb|ADO95481.1| Transcription elongation factor GreB [Haemophilus influenzae R2846]
Length = 162
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G++++ QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWNELDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V L + G+ K Y+IVG E +
Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GEIKQYRIVGCDEFAPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK L D + V P G T I ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156
>gi|73542156|ref|YP_296676.1| transcription elongation factor GreB [Ralstonia eutropha JMP134]
gi|72119569|gb|AAZ61832.1| transcription elongation factor GreB [Ralstonia eutropha JMP134]
Length = 188
Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T+ G+++++ EL +RP +++ +S A + GD SEN +Y K+ + R+
Sbjct: 29 KNYITADGYNRLRNELMHLIDVDRPDVVQIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + +AEV+D S D+I FGATV+ + SG++ IVG E D+ + VS
Sbjct: 89 RFLTRRLDKAEVVDPSLQGDNDQIFFGATVTYANQ-SGEETTITIVGMDEVDLDTNHVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA+ALI GD +++ P G + +IL V +
Sbjct: 148 ISPIAKALIKAREGDTVALRTPAGVEQIDILDVSY 182
>gi|330815852|ref|YP_004359557.1| Transcription elongation factor [Burkholderia gladioli BSR3]
gi|327368245|gb|AEA59601.1| Transcription elongation factor [Burkholderia gladioli BSR3]
Length = 186
Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL EERP ++K +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLHLIDEERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S S D++ FGATV G+ IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQESADQVFFGATVDYA-TEDGEDHTITIVGVDEVDLDHGHVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ +GD +++ P G + ++L V +
Sbjct: 147 VSPIARALLKARIGDTVTLMTPAGPQPIDVLDVRY 181
>gi|241895036|ref|ZP_04782332.1| elongation factor GreA [Weissella paramesenteroides ATCC 33313]
gi|241871754|gb|EER75505.1| elongation factor GreA [Weissella paramesenteroides ATCC 33313]
Length = 161
Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats.
Identities = 66/159 (41%), Positives = 95/159 (59%), Gaps = 3/159 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T +G KI++EL E R I I AR++GDLSEN+EY +AK+ Q
Sbjct: 1 MAEEKTFPMTLEGKAKIEEELNTLITETRSEITGRIQLARSFGDLSENSEYASAKDEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ L+N++ AE+ID S ++ D +A G V+ E + ++Y IVG EA+ G
Sbjct: 61 VEGRIKTLQNMLDNAEIIDSSEIADDEVAVGKKVTFKELPDEEPESYSIVGAVEANPSEG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+S SPIA ALIG ++GD +SV P G + EIL V
Sbjct: 121 KISNESPIAAALIGHKVGDTVSVTLPNGFDMEIEILSVE 159
>gi|327480631|gb|AEA83941.1| transcription elongation factor GreB [Pseudomonas stutzeri DSM
4166]
Length = 165
Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ +++ FGA V+L +++ G + Y+IVG E D++ G++SI SP+
Sbjct: 75 TKRLEKLKVVSERPGDPNKVYFGAWVTLEDED-GAQARYRIVGPDELDLRQGMISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+GK L + V P G K + ++ + +
Sbjct: 134 ARALVGKALDAEVQVQTPTGTKLWYVVAIDY 164
>gi|229845698|ref|ZP_04465821.1| transcription elongation factor GreB [Haemophilus influenzae
6P18H1]
gi|229811384|gb|EEP47090.1| transcription elongation factor GreB [Haemophilus influenzae
6P18H1]
Length = 162
Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V L + G+ K Y+IVG E +
Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFAPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK L D + V P G T + ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156
>gi|253690269|ref|YP_003019459.1| transcription elongation factor GreB [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251756847|gb|ACT14923.1| transcription elongation factor GreB [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 163
Score = 153 bits (388), Expect = 5e-36, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+DK++ E +RP I K +S A + GD SENA+Y K L +
Sbjct: 1 MKTNLITREGYDKLRAEHDHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLV 120
R+ L +T +++D S + FGA V + GD K +IVG E + +
Sbjct: 61 RVRYLRKCLTELKIVDYSPQQDGSVFFGAWVEIEN-EQGDVKRLRIVGPDEIYGDNKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SP+ARA++ K + + +VN P G + + + + ++
Sbjct: 120 SIDSPMARAMLKKAVDEEFTVNTPDGPREWFVNSIDYV 157
>gi|312134579|ref|YP_004001917.1| grea/greb family elongation factor [Caldicellulosiruptor owensensis
OL]
gi|311774630|gb|ADQ04117.1| GreA/GreB family elongation factor [Caldicellulosiruptor owensensis
OL]
Length = 162
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 55/153 (35%), Positives = 92/153 (60%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+
Sbjct: 9 KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAALEERI 68
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A LE +I A++ID +S D + G V + ++GD Y IVG +E+D + +S
Sbjct: 69 AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDIVEYSIVGSKESDPLNFKISDE 128
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+GK++GD++ V P G+ Y+IL++
Sbjct: 129 SPVGKALMGKKVGDVVEVIVPAGKFRYKILEIS 161
>gi|301155419|emb|CBW14885.1| transcription elongation factor [Haemophilus parainfluenzae T3T1]
Length = 158
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V L ++ G+ K Y++VG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEDEE-GEVKQYRLVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK + D I V P G+ + ++ +
Sbjct: 120 SIDSPVARALIGKGVDDEIHVETPSGKVVLYVNRIWY 156
>gi|146299350|ref|YP_001193941.1| transcription elongation factor GreA [Flavobacterium johnsoniae
UW101]
gi|189042241|sp|A5FJJ8|GREA_FLAJO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|146153768|gb|ABQ04622.1| transcription elongation factor GreA [Flavobacterium johnsoniae
UW101]
Length = 158
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 94/156 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T+ G K++ EL + RP+ + I++AR GDLSENAEY AAKE Q L E
Sbjct: 1 MSKVSYYTADGLKKLKDELEHLKSVMRPKASQDIADARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE + A +ID S + ++ + V + +++G + Y +V + EAD+++G +
Sbjct: 61 MRIAKLEEVYANARLIDESQLDVSKVLVLSNVKIKNQSNGMEMKYTLVAESEADLKTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S++SPI + L+GK +G+I + P G +EIL++
Sbjct: 121 SVTSPIGKGLLGKSVGEIAEITVPNGTLKFEILEIT 156
>gi|330813686|ref|YP_004357925.1| transcription elongation factor GreA [Candidatus Pelagibacter sp.
IMCC9063]
gi|327486781|gb|AEA81186.1| transcription elongation factor GreA [Candidatus Pelagibacter sp.
IMCC9063]
Length = 158
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 74/158 (46%), Positives = 102/158 (64%), Gaps = 1/158 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +G +KI+ EL R+ R +I+ AISEAR++GDL ENAEY AAKE Q LNE
Sbjct: 1 MEKEPITIQGLEKIKSELDDRKHTTRSKIVMAISEARSHGDLKENAEYHAAKEEQGLNEK 60
Query: 62 RMAELENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE I AEVIDI + D + F +T+ + + + K Y+IVG EADV++GL+
Sbjct: 61 RIQELETSIAMAEVIDIRKIPNDNKVIFSSTIIVKDLDGDKKNTYKIVGRDEADVKNGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ R IGK D + + P GEK +EIL V +I
Sbjct: 121 YYKSPLGRGFIGKNKEDFVVIETPSGEKNFEILDVKYI 158
>gi|229825233|ref|ZP_04451302.1| hypothetical protein GCWU000182_00585 [Abiotrophia defectiva ATCC
49176]
gi|229790605|gb|EEP26719.1| hypothetical protein GCWU000182_00585 [Abiotrophia defectiva ATCC
49176]
Length = 178
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 88/155 (56%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ K +T +G ++++EL + R I + I EAR GDLSENAEY AAK+ Q E
Sbjct: 22 IMTKNVMTYEGLQELEKELEHLKVNRRREIAEKIKEAREQGDLSENAEYDAAKDEQRDIE 81
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E I+ AEV + G+T +L++ ++ Y++VG EA+ G +
Sbjct: 82 ARIEEIEKILKNAEVFLEEDAEKGTVNLGSTFTLLDMEYDEEIVYKLVGATEANSLEGKI 141
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ RAL G + GDI+ V P G Y+++++
Sbjct: 142 SNESPVGRALKGAKEGDIVEVETPAGTLQYKVIKI 176
>gi|190149679|ref|YP_001968204.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|307245216|ref|ZP_07527307.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307262987|ref|ZP_07544609.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|189914810|gb|ACE61062.1| transcription elongation factor GreB [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|306853860|gb|EFM86074.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306871613|gb|EFN03335.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 162
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K +
Sbjct: 1 MAKSNYITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V L G+ K Y+IVG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGKE D I V+ P G+ I ++ +
Sbjct: 120 SIDSPVARALIGKEADDEIKVDTPLGKSLLYINKIWY 156
>gi|295396925|ref|ZP_06807049.1| transcription elongation factor GreA [Aerococcus viridans ATCC
11563]
gi|294974859|gb|EFG50562.1| transcription elongation factor GreA [Aerococcus viridans ATCC
11563]
Length = 159
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 63/156 (40%), Positives = 101/156 (64%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +++ P+T +G +KIQQ+L + +R I++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEEVYPMTQEGLEKIQQDLDELKIVKRKEIVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG++ +LE ++ A++ID + + ++ G V+ +E GD++ Y IVG EAD G
Sbjct: 61 EGQIQKLEKMVRYAKIIDPNEIDEGIVSLGRKVTFIELPDGDEEVYSIVGRAEADPLDGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+ALIGK + D +++ PGG+ +I V
Sbjct: 121 ISNESPIAQALIGKGVNDEVTIETPGGDMVVKITSV 156
>gi|229013597|ref|ZP_04170728.1| Transcription elongation factor greA [Bacillus mycoides DSM 2048]
gi|229062075|ref|ZP_04199400.1| Transcription elongation factor greA [Bacillus cereus AH603]
gi|229169123|ref|ZP_04296838.1| Transcription elongation factor greA [Bacillus cereus AH621]
gi|228614351|gb|EEK71461.1| Transcription elongation factor greA [Bacillus cereus AH621]
gi|228717227|gb|EEL68902.1| Transcription elongation factor greA [Bacillus cereus AH603]
gi|228747656|gb|EEL97528.1| Transcription elongation factor greA [Bacillus mycoides DSM 2048]
Length = 175
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 60/152 (39%), Positives = 93/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ E+ + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 24 YPMTQEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN+I A +I+ + + G TV E GD++ Y IVG EAD G +S S
Sbjct: 84 QLENMIRNAVIIEDNGEESTVVTLGKTVIFKELPGGDEEAYIIVGSAEADPFEGRISNDS 143
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA++L+GK++G+ +++ PGGE EI+ V
Sbjct: 144 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 175
>gi|307721519|ref|YP_003892659.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM
16294]
gi|306979612|gb|ADN09647.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM
16294]
Length = 174
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 97/154 (62%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P++ +G+DK+ +E ++ + E+P++ A A GD SENA+YQAAKE + R+
Sbjct: 2 KEPMSIEGYDKLIEEFKYLLEVEKPKVAHEKLVAAALGDRSENADYQAAKEKLRFIDKRL 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L +I + +ID S ++AFG++V+LV ++ D++ Y I G E++ ++GL+SI
Sbjct: 62 FYLNKMIQSSHIIDPSLHEHKQVAFGSSVTLVNIDTEDEEIYTICGVLESEPENGLISIH 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A+A++GK+ GD + P K YEI ++ +
Sbjct: 122 SPLAKAMLGKKEGDEFKIQLPNALKEYEIQKIKY 155
>gi|304397825|ref|ZP_07379701.1| GreA/GreB family elongation factor [Pantoea sp. aB]
gi|304354536|gb|EFM18907.1| GreA/GreB family elongation factor [Pantoea sp. aB]
Length = 157
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +GFDK++ EL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTRLITREGFDKLKAELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + ++D S ++ FGA V + + GD K ++IVG E + +S
Sbjct: 61 RVRYLTKSLEQLRIVDYSPQQDGKVFFGAWVEIEN-DEGDLKRFRIVGYDEIFGRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE+GD +V P G + + + +
Sbjct: 120 IDSPMARALLKKEVGDAATVETPVGPALWYVNAIDY 155
>gi|308188422|ref|YP_003932553.1| Transcription elongation factor greB [Pantoea vagans C9-1]
gi|308058932|gb|ADO11104.1| Transcription elongation factor greB [Pantoea vagans C9-1]
Length = 157
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +GFDK++ EL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTRLITREGFDKLKAELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + ++D S ++ FGA V + + GD K ++IVG E + +S
Sbjct: 61 RVRYLTKSLEQLRIVDYSPQQDGKVFFGAWVEIEN-DEGDLKRFRIVGYDEIFGRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE+GD +V P G + + + +
Sbjct: 120 IDSPMARALLKKEVGDAATVETPLGPALWYVNAIDY 155
>gi|330808345|ref|YP_004352807.1| GreA-GreB family transcriptional regulator [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327376453|gb|AEA67803.1| putative Transcription factor, GreA-GreB family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 165
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ E RP++ +A+SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGEARMRAEFHELWHVRRPQVTQAVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ +++ FGA V++ +++ G + Y+IVG E D++ L+SI SP+
Sbjct: 75 TKRLEALKVVSEKPSDPNKVYFGAWVTVEDED-GKESRYRIVGPDELDLKQNLISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK L +SV P GEK I+ + +
Sbjct: 134 ARALIGKALDAEVSVQTPTGEKRVYIVDIAY 164
>gi|16272512|ref|NP_438726.1| transcription elongation factor GreB [Haemophilus influenzae Rd
KW20]
gi|260581015|ref|ZP_05848838.1| transcription elongation factor GreB [Haemophilus influenzae RdAW]
gi|1170017|sp|P43882|GREB_HAEIN RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|1573556|gb|AAC22227.1| transcription elongation factor (greB) [Haemophilus influenzae Rd
KW20]
gi|260092374|gb|EEW76314.1| transcription elongation factor GreB [Haemophilus influenzae RdAW]
Length = 158
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V L + G+ K Y+IVG E +
Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFAPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK L D + V P G T + ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156
>gi|222151496|ref|YP_002560652.1| transcription elongation factor [Macrococcus caseolyticus JCSC5402]
gi|254799561|sp|B9E6Y8|GREA_MACCJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|222120621|dbj|BAH17956.1| transcription elongation factor [Macrococcus caseolyticus JCSC5402]
Length = 158
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 97/157 (61%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + P+T +GFDK++ EL + RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 3 MQKEYPMTQEGFDKLEVELEHLKTVRRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFVE 62
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ ++E ++ A +I+ S + G TV+ E ++++Y+IVG EAD G +
Sbjct: 63 QEITKIEMMLRHAVIIE-DDGSKSEVQIGRTVTFAEVPGNEEESYKIVGSAEADPFEGKI 121
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
S SPIA+AL+GK++GD ++V P G E +I+++
Sbjct: 122 SNESPIAKALLGKKVGDEVNVPLPNGNEMRVKIVEIS 158
>gi|325576611|ref|ZP_08147329.1| transcription elongation factor GreB [Haemophilus parainfluenzae
ATCC 33392]
gi|325161174|gb|EGC73289.1| transcription elongation factor GreB [Haemophilus parainfluenzae
ATCC 33392]
Length = 158
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V L ++ G+ K Y++VG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEDEE-GEVKQYRLVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK++ D I V P G+ + ++ +
Sbjct: 120 SIDSPVARALIGKDVDDEIHVETPSGKVVLYVNRIWY 156
>gi|163802255|ref|ZP_02196150.1| transcription elongation factor GreB [Vibrio sp. AND4]
gi|159174060|gb|EDP58870.1| transcription elongation factor GreB [Vibrio sp. AND4]
Length = 161
Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K++ E E+RP I K ++ A + GD SENA+Y K L +
Sbjct: 1 MKTKLITREGYNKLKAEHDHLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + +++D S ++ FGA V + +GD K ++IVG +E G +
Sbjct: 61 RVRFLRKFLPEVKIVDYSPQQEGKVFFGAWVEIEN-EAGDVKQFRIVGPEEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SP+ARAL+ KE+ D I+V P G+K + I + ++
Sbjct: 120 SIDSPMARALLKKEVDDEITVRTPEGDKEWFINSITYM 157
>gi|326336154|ref|ZP_08202326.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
338 str. F0234]
gi|325691663|gb|EGD33630.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
338 str. F0234]
Length = 156
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 63/155 (40%), Positives = 93/155 (60%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ T +G ++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MKVAYYTEEGLKALKAELDQLRDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLEL 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++A+LE ++ A VID S + ++ +TV L K + Y +V + EAD+++G +S
Sbjct: 61 KIAKLEELVANARVIDESQLDTSKVLILSTVKLKNKANNAIMTYTLVAESEADLKAGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+SSPI R L+GK +GDI + P G EI+++
Sbjct: 121 VSSPIGRGLLGKSVGDIAEIKVPNGVLQMEIIEIK 155
>gi|296111138|ref|YP_003621519.1| transcription elongation factor GreA [Leuconostoc kimchii IMSNU
11154]
gi|295832669|gb|ADG40550.1| transcription elongation factor GreA [Leuconostoc kimchii IMSNU
11154]
Length = 160
Score = 153 bits (388), Expect = 7e-36, Method: Composition-based stats.
Identities = 68/159 (42%), Positives = 99/159 (62%), Gaps = 3/159 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T++G DK+Q EL +RP I I AR+YGDLSEN+EYQ+AK+ Q
Sbjct: 1 MSEEKVFPMTAEGRDKLQTELEDLITRQRPEITTRIQIARSYGDLSENSEYQSAKDEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ L+ +I AE+ID + + D ++ G TV+ E + + Y IVG E+D SG
Sbjct: 61 VEGRIQTLKKMIENAEIIDPNATAADEVSLGKTVTFKELPDEEAETYAIVGSTESDPLSG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+S S +A ALIGK++GD ++V P G+ T EIL+V
Sbjct: 121 KISNESAMAVALIGKKVGDKVAVPLPSGDNITVEILKVE 159
>gi|217077586|ref|YP_002335304.1| transcription elongation factor GreA [Thermosipho africanus TCF52B]
gi|226737011|sp|B7ID86|GREA_THEAB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|217037441|gb|ACJ75963.1| transcription elongation factor GreA [Thermosipho africanus TCF52B]
Length = 156
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 2/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ I +T +G++K++ EL +Q+ I + I EAR GDLSEN+EYQ AK Q R
Sbjct: 4 ESIYLTKEGYEKLKAELDQLKQKLMFEIAQRIKEARELGDLSENSEYQEAKNEQGRIAAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELEN++++AEVI+ + + I G V + ++G++K QIV EADV + +S
Sbjct: 64 INELENMLSKAEVIEG--LDTNVINIGNWVLIKNLDTGEEKTIQIVTPHEADVFNNKISF 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPI R L+GK++G+++ + AP G Y+IL +
Sbjct: 122 ESPIGRVLVGKKVGEVVKIKAPKGVFKYQILGIK 155
>gi|330503584|ref|YP_004380453.1| transcription elongation factor GreB [Pseudomonas mendocina NK-01]
gi|328917870|gb|AEB58701.1| transcription elongation factor GreB [Pseudomonas mendocina NK-01]
Length = 165
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 95/151 (62%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ +++ FGA V++ +++ G++ Y+IVG E D++ GL+SI SP+
Sbjct: 75 TKRLEKLKVVSEKPSDPNKVYFGAWVTIEDED-GEQSRYRIVGPDELDLKQGLISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+GKEL + V++P GEKT I+++ +
Sbjct: 134 ARALVGKELDAEVRVHSPSGEKTCYIVEIGY 164
>gi|222110079|ref|YP_002552343.1| transcription elongation factor greb [Acidovorax ebreus TPSY]
gi|221729523|gb|ACM32343.1| transcription elongation factor GreB [Acidovorax ebreus TPSY]
Length = 186
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T +G+ ++++EL +ERP++++ + A + GD SEN +Y K+ +
Sbjct: 25 ASKNYITPQGYARLRRELLDLIDDERPKVVEIVHWAASNGDRSENGDYLYGKKRLREIDR 84
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + A+V+D S +G D++ FGATV+ E++ G ++ I+G EAD +
Sbjct: 85 RIRFLTKRLEIADVVDPSVHTGSDQVFFGATVTYAEED-GVERTVTILGIDEADNSLQQI 143
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S SP+ARAL+ GD +++ P G +T EIL+V +
Sbjct: 144 SWISPVARALLKAREGDEVTLQTPAGLRTLEILRVEY 180
>gi|89889854|ref|ZP_01201365.1| transcription elongation factor, GreA/GreB [Flavobacteria bacterium
BBFL7]
gi|89518127|gb|EAS20783.1| transcription elongation factor, GreA/GreB [Flavobacteria bacterium
BBFL7]
Length = 158
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 61/156 (39%), Positives = 97/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + T +GF K++ EL+ + ERPR +AI+EAR GDLSENAEY AAKE Q + E
Sbjct: 1 MSNVSYYTEEGFKKLKDELKQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGMLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+++LE +++ A +ID S + ++ + V + N+ NY++V E+D+ GL+
Sbjct: 61 MRISKLEAVVSNARIIDESDLDLSKVLIHSNVKIKNLNNKMVMNYKLVAQSESDITKGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SPI +AL+GKE+G++ P G EI+++
Sbjct: 121 SVDSPIGKALLGKEVGEVAEAVVPVGTIKLEIMEIS 156
>gi|288555392|ref|YP_003427327.1| transcription elongation factor GreA [Bacillus pseudofirmus OF4]
gi|288546552|gb|ADC50435.1| transcription elongation factor GreA [Bacillus pseudofirmus OF4]
Length = 158
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 98/157 (62%), Gaps = 2/157 (1%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + K +T G K+++EL + + E R +++ I AR++GDLSEN+EY +AKE Q
Sbjct: 1 MAEEKKHYMTEDGKRKLEEELEFLKTERRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+A+LE +I A +I+ S ++ G V +E GD++ Y IVG E+D G
Sbjct: 61 VEGRIAQLEKMIRNAVMIEEEAGSSHAVSLGKRVKFIELPDGDEEEYTIVGSAESDPAEG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+A++++G+ +GD ++VN P GE EIL++
Sbjct: 121 KISNDSPMAQSILGRSVGDKVTVNTPAGEMKIEILEI 157
>gi|262274892|ref|ZP_06052703.1| transcription elongation factor GreA [Grimontia hollisae CIP
101886]
gi|262221455|gb|EEY72769.1| transcription elongation factor GreA [Grimontia hollisae CIP
101886]
Length = 157
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 112/158 (70%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+T +G +++ ++ R + RP I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MDKVPMTVRG-EQLLRDELDRLLKRRPLITQAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VIDI+ M + ++ FGATV+L++ ++ ++ YQIVGD EAD + L+
Sbjct: 60 QIRDIEYKLSVAQVIDIAKMPNNGKVIFGATVTLIDCHTDEEVTYQIVGDDEADFKKNLI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGKE GD +++ PGG K +EI V +I
Sbjct: 120 SVNSPIARGLIGKEEGDEVAITVPGGVKEFEIESVKYI 157
>gi|251793288|ref|YP_003008016.1| transcription elongation factor GreB [Aggregatibacter aphrophilus
NJ8700]
gi|247534683|gb|ACS97929.1| transcription elongation factor GreB [Aggregatibacter aphrophilus
NJ8700]
Length = 159
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G++ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWNVLDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D S +I FGA V L ++ G+ K Y++VG E D +
Sbjct: 61 RRVRFLTKRLEVLQIVDYSPKQEGKIFFGAWVELENED-GEVKQYRLVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGKE D I+V+ P G+ + ++ +
Sbjct: 120 SIDSPVARALIGKEEEDEITVDTPSGKIQLYVNRIWY 156
>gi|222099868|ref|YP_002534436.1| Transcription elongation factor greA [Thermotoga neapolitana DSM
4359]
gi|254799574|sp|B9K7Y7|GREA_THENN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|221572258|gb|ACM23070.1| Transcription elongation factor greA [Thermotoga neapolitana DSM
4359]
Length = 156
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 102/155 (65%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+ +T +G++K++QEL +++ I + I EAR GDLSEN+EY+AAK Q
Sbjct: 1 MKKVRLTREGYEKLKQELEELKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E I++ AE+I+ S GD + G V++ ++G++ ++IV QEAD + +S
Sbjct: 61 RIMEIEQILSNAEIIEDSE-EGDEVTLGKWVTIRNLDTGEEHKFRIVTPQEADFFAQKLS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ++L+G+++GDI+ V APGG + Y++++V
Sbjct: 120 ADSPLGKSLLGRKVGDIVKVKAPGGVQRYQVVEVT 154
>gi|145633475|ref|ZP_01789204.1| transcription elongation factor GreB [Haemophilus influenzae 3655]
gi|144985844|gb|EDJ92452.1| transcription elongation factor GreB [Haemophilus influenzae 3655]
Length = 168
Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V L + G+ K Y+IVG E +
Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFAPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK L D + V P G T + ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156
>gi|326203392|ref|ZP_08193257.1| transcription elongation factor GreA [Clostridium papyrosolvens DSM
2782]
gi|325986650|gb|EGD47481.1| transcription elongation factor GreA [Clostridium papyrosolvens DSM
2782]
Length = 158
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 88/155 (56%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ +T +G K+++EL + + +R + + I +A ++GD+SEN+EY AK Q EG
Sbjct: 3 AKEVVLTYEGLKKLEEELEFLRGTKRKEVAERIKQALSFGDISENSEYDEAKNEQAQVEG 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LE+++ A +ID ++ D ++ G+ V + + ++ Y IVG EA+ +S
Sbjct: 63 RIVQLESMLKHARIIDEDEVNTDVVSLGSKVKIYDIEFDEEVEYLIVGSTEANPLKSKIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ALIG + + V P G ++IL++
Sbjct: 123 NESPVGAALIGHSKDETVEVQVPDGVLKFKILEIS 157
>gi|307254163|ref|ZP_07536008.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307258626|ref|ZP_07540361.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306862863|gb|EFM94812.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306867283|gb|EFM99136.1| Transcription elongation factor greB [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 162
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + QEL++ ++ERP++ +A+SEA A GD SENAEY K +
Sbjct: 1 MAKSNYITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ FGA V L G+ K Y+IVG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGKE D I V+ P G+ I ++ +
Sbjct: 120 SIDSPVARALIGKEADDEIKVDTPLGKSLLYINKIWY 156
>gi|116617590|ref|YP_817961.1| transcription elongation factor GreA [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
gi|122272209|sp|Q03YY4|GREA_LEUMM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116096437|gb|ABJ61588.1| transcription elongation factor GreA [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 160
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 68/159 (42%), Positives = 100/159 (62%), Gaps = 3/159 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T++G DK+Q EL +RP I K I AR+YGDLSEN+EYQ+AK+ Q
Sbjct: 1 MSEEKTYPMTAEGRDKLQLELEDLIANQRPEITKRIQIARSYGDLSENSEYQSAKDEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ L+N+I AE+ID + + D ++ G TV+ E + + + Y IVG EAD +G
Sbjct: 61 VEGRIQTLKNMIDNAEIIDSNATAKDEVSLGKTVTFKELPNEEPETYAIVGSVEADPLAG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+S SP+A ALIGK++G+ ++V P G EI+ V
Sbjct: 121 KISNESPMANALIGKKVGETVAVPLPNGISIDVEIINVT 159
>gi|169824685|ref|YP_001692296.1| transcription elongation factor [Finegoldia magna ATCC 29328]
gi|302380203|ref|ZP_07268675.1| transcription elongation factor GreA [Finegoldia magna
ACS-171-V-Col3]
gi|303234962|ref|ZP_07321586.1| transcription elongation factor GreA [Finegoldia magna BVS033A4]
gi|254799559|sp|B0S216|GREA_FINM2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|167831490|dbj|BAG08406.1| transcription elongation factor [Finegoldia magna ATCC 29328]
gi|302311986|gb|EFK93995.1| transcription elongation factor GreA [Finegoldia magna
ACS-171-V-Col3]
gi|302493817|gb|EFL53599.1| transcription elongation factor GreA [Finegoldia magna BVS033A4]
Length = 159
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T +G D+ ++EL + + R I + I AR +GDLSENAEY AK Q
Sbjct: 1 MADKEFLLTQEGLDQHKEELEFLKTTRRTEIAEKIKVARGFGDLSENAEYDEAKNEQAQV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ LEN++ A+VI D + G+TV+ N + YQIVG E+D +G
Sbjct: 61 EERINYLENLLLHAKVIQDDENQKDVVTVGSTVTYKNLNLNKEMTYQIVGTAESDPFAGR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP +AL+ ++GD V PGG ++L V
Sbjct: 121 ISNESPTGKALLNLKVGDTTKVETPGGIVELKVLTVK 157
>gi|59710728|ref|YP_203504.1| transcription elongation factor GreB [Vibrio fischeri ES114]
gi|59478829|gb|AAW84616.1| transcription elongation factor [Vibrio fischeri ES114]
Length = 157
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +GF+K+Q EL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTNLITREGFNKLQDELTFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + +V+D S +I FGA V + GD +++IVG E ++ +S
Sbjct: 61 RVRYLRKRLDQVKVVDYSPQQDGKIFFGAFVEIEN-EQGDTLSFRIVGPDEIFGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALI KE+ + + V P G+K + + + +
Sbjct: 120 IDSPMARALIKKEVDEDVIVKTPDGDKEWFVNSIRY 155
>gi|83643478|ref|YP_431913.1| transcription elongation factor GreB [Hahella chejuensis KCTC 2396]
gi|83631521|gb|ABC27488.1| transcription elongation factor GreB [Hahella chejuensis KCTC 2396]
Length = 167
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 54/153 (35%), Positives = 90/153 (58%), Gaps = 1/153 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+TS+G +++EL++ + +RP + KA+SEA A GD SENAEY K+ + R+
Sbjct: 14 YITSEGERVLREELQYLWKVKRPEVTKAVSEAAAMGDRSENAEYIYGKKQLREIDRRVRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + +V+D R+ FGA V+L ++ GD+ Y+IVG E Q G +S+ SP
Sbjct: 74 LTKRLDELKVVDRPPEDQSRVYFGAWVTLEDEE-GDEHRYRIVGSDEIGAQKGYISVDSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+A+AL+ K++ D V P G K+Y ++++ +
Sbjct: 133 MAKALLKKQVDDEAIVTTPSGRKSYFVIEIEYC 165
>gi|145635344|ref|ZP_01791046.1| transcription elongation factor GreB [Haemophilus influenzae
PittAA]
gi|145637929|ref|ZP_01793571.1| transcription elongation factor GreB [Haemophilus influenzae
PittHH]
gi|145267350|gb|EDK07352.1| transcription elongation factor GreB [Haemophilus influenzae
PittAA]
gi|145268869|gb|EDK08830.1| transcription elongation factor GreB [Haemophilus influenzae
PittHH]
Length = 162
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V L + G+ K Y+IVG E +
Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GEIKQYRIVGCDEFAPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK L D + V P G T I ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156
>gi|238026489|ref|YP_002910720.1| transcription elongation factor GreB [Burkholderia glumae BGR1]
gi|237875683|gb|ACR28016.1| Transcription elongation factor [Burkholderia glumae BGR1]
Length = 186
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL EERP ++K +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLQLIDEERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S S D++ FGATV G++ IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQESTDQVFFGATVDYA-TEDGEEHTITIVGVDEVDLDRGHVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ +GD +++ PGG + ++L V +
Sbjct: 147 VSPIARALLKARIGDTVTLVTPGGPQPVDVLDVRY 181
>gi|147676597|ref|YP_001210812.1| transcription elongation factor [Pelotomaculum thermopropionicum
SI]
gi|146272694|dbj|BAF58443.1| transcription elongation factor [Pelotomaculum thermopropionicum
SI]
Length = 158
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T G K++ EL + +R + + I +A +GD++EN+EY+ AK Q
Sbjct: 1 MKEKEVILTVNGLKKLESELELLKSVKRREVAERIKQAIEFGDITENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A++ID + + ++ G+TV L + GD+ Y IVG EAD +
Sbjct: 61 EGRILTLEKMLRNAKIIDDENIGTEVVSIGSTVLLKDLECGDEYKYTIVGSAEADPGANK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ RA++G+ G ++ V P G+ Y+I+ +L
Sbjct: 121 ISNESPVGRAILGQPKGSVVEVTVPAGQLKYQIIDIL 157
>gi|148548662|ref|YP_001268764.1| transcription elongation factor GreB [Pseudomonas putida F1]
gi|148512720|gb|ABQ79580.1| transcription elongation factor GreB [Pseudomonas putida F1]
Length = 162
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTNIITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +V+ S R+ FGA V + + G+ ++IVG E ++ +S
Sbjct: 61 RVRYLRKRLEDVKVVAYSPEQEGRVFFGAWVEIEN-DDGETMKFRIVGYDEIYGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE GD + V+ P GE T+ + + +
Sbjct: 120 IDSPMARALLKKEEGDEVVVHTPTGEATWYVSSIRY 155
>gi|15640654|ref|NP_230283.1| transcription elongation factor GreA [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121730110|ref|ZP_01682511.1| transcription elongation factor GreA [Vibrio cholerae V52]
gi|147675665|ref|YP_001216128.1| transcription elongation factor GreA [Vibrio cholerae O395]
gi|153217134|ref|ZP_01950898.1| transcription elongation factor GreA [Vibrio cholerae 1587]
gi|153801763|ref|ZP_01956349.1| transcription elongation factor GreA [Vibrio cholerae MZO-3]
gi|153823554|ref|ZP_01976221.1| transcription elongation factor GreA [Vibrio cholerae B33]
gi|153827690|ref|ZP_01980357.1| transcription elongation factor GreA [Vibrio cholerae MZO-2]
gi|153830955|ref|ZP_01983622.1| transcription elongation factor GreA [Vibrio cholerae 623-39]
gi|227080815|ref|YP_002809366.1| transcription elongation factor GreA [Vibrio cholerae M66-2]
gi|229505744|ref|ZP_04395254.1| transcription elongation factor GreA [Vibrio cholerae BX 330286]
gi|229509223|ref|ZP_04398708.1| transcription elongation factor GreA [Vibrio cholerae B33]
gi|229512896|ref|ZP_04402363.1| transcription elongation factor GreA [Vibrio cholerae TMA 21]
gi|229519568|ref|ZP_04409011.1| transcription elongation factor GreA [Vibrio cholerae RC9]
gi|229520925|ref|ZP_04410347.1| transcription elongation factor GreA [Vibrio cholerae TM 11079-80]
gi|229530439|ref|ZP_04419827.1| transcription elongation factor GreA [Vibrio cholerae 12129(1)]
gi|229608855|ref|YP_002879503.1| transcription elongation factor GreA [Vibrio cholerae MJ-1236]
gi|254292200|ref|ZP_04962968.1| transcription elongation factor GreA [Vibrio cholerae AM-19226]
gi|297580760|ref|ZP_06942686.1| transcription elongation factor GreA [Vibrio cholerae RC385]
gi|298500750|ref|ZP_07010553.1| transcription elongation factor GreA [Vibrio cholerae MAK 757]
gi|9655069|gb|AAF93800.1| transcription elongation factor GreA [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121628145|gb|EAX60677.1| transcription elongation factor GreA [Vibrio cholerae V52]
gi|124113827|gb|EAY32647.1| transcription elongation factor GreA [Vibrio cholerae 1587]
gi|124122728|gb|EAY41471.1| transcription elongation factor GreA [Vibrio cholerae MZO-3]
gi|126518923|gb|EAZ76146.1| transcription elongation factor GreA [Vibrio cholerae B33]
gi|146317548|gb|ABQ22087.1| transcription elongation factor GreA [Vibrio cholerae O395]
gi|148873568|gb|EDL71703.1| transcription elongation factor GreA [Vibrio cholerae 623-39]
gi|149737832|gb|EDM52737.1| transcription elongation factor GreA [Vibrio cholerae MZO-2]
gi|150421881|gb|EDN13860.1| transcription elongation factor GreA [Vibrio cholerae AM-19226]
gi|227008703|gb|ACP04915.1| transcription elongation factor GreA [Vibrio cholerae M66-2]
gi|227012459|gb|ACP08669.1| transcription elongation factor GreA [Vibrio cholerae O395]
gi|229332212|gb|EEN97700.1| transcription elongation factor GreA [Vibrio cholerae 12129(1)]
gi|229342158|gb|EEO07154.1| transcription elongation factor GreA [Vibrio cholerae TM 11079-80]
gi|229344257|gb|EEO09232.1| transcription elongation factor GreA [Vibrio cholerae RC9]
gi|229350145|gb|EEO15098.1| transcription elongation factor GreA [Vibrio cholerae TMA 21]
gi|229353795|gb|EEO18731.1| transcription elongation factor GreA [Vibrio cholerae B33]
gi|229357967|gb|EEO22884.1| transcription elongation factor GreA [Vibrio cholerae BX 330286]
gi|229371510|gb|ACQ61933.1| transcription elongation factor GreA [Vibrio cholerae MJ-1236]
gi|297535176|gb|EFH74011.1| transcription elongation factor GreA [Vibrio cholerae RC385]
gi|297540531|gb|EFH76589.1| transcription elongation factor GreA [Vibrio cholerae MAK 757]
Length = 158
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 74/159 (46%), Positives = 117/159 (73%), Gaps = 2/159 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MMEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICE 59
Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
++ ++E ++ A+VID++ M ++ FGATV++++ NS ++K YQIVGD EAD++SG
Sbjct: 60 AQIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGR 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S++SPIAR LIGK GD +S+ PGG K +EI +V ++
Sbjct: 120 ISVNSPIARGLIGKFEGDEVSIATPGGNKVFEIDRVEYL 158
>gi|120612233|ref|YP_971911.1| transcription elongation factor GreB [Acidovorax citrulli AAC00-1]
gi|120590697|gb|ABM34137.1| transcription elongation factor GreB [Acidovorax citrulli AAC00-1]
Length = 188
Score = 153 bits (387), Expect = 8e-36, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL ERP++++ + A + GD SEN +Y K+ + R+
Sbjct: 29 KNYITPAGYARLRSELLDLMDNERPKVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S G D++ FGATV+ V+ + ++ I+G E D VS
Sbjct: 89 RFLTKRLDIAEVVDPSLHHGSDQVFFGATVTYVD-DLDVERTVTILGIDEVDSGQSQVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ GD + + PGG +T EIL+V +
Sbjct: 148 VSPVARALLKAREGDEVRLGTPGGLRTLEILRVEY 182
>gi|56417186|ref|YP_154260.1| transcription elongation factor greA [Anaplasma marginale str. St.
Maries]
gi|222475551|ref|YP_002563968.1| transcription elongation factor greA (greA) [Anaplasma marginale
str. Florida]
gi|254995354|ref|ZP_05277544.1| transcription elongation factor greA (greA) [Anaplasma marginale
str. Mississippi]
gi|255003541|ref|ZP_05278505.1| transcription elongation factor greA (greA) [Anaplasma marginale
str. Puerto Rico]
gi|56388418|gb|AAV87005.1| transcription elongation factor greA [Anaplasma marginale str. St.
Maries]
gi|222419689|gb|ACM49712.1| transcription elongation factor greA (greA) [Anaplasma marginale
str. Florida]
Length = 174
Score = 153 bits (387), Expect = 9e-36, Method: Composition-based stats.
Identities = 72/160 (45%), Positives = 109/160 (68%), Gaps = 6/160 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +GF K++ EL + ERP+IIK+IS+AR GDLSENAEY AA+E Q L E ++
Sbjct: 16 RFPITRRGFQKLEAELEALKS-ERPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 74
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSGDK--KNYQIVGDQEADVQSGL 119
ELE+ +RAEVID+S +SGD + FGATV+ + ++ + YQIVG+ EADV +
Sbjct: 75 MELESKRSRAEVIDVSELSGDTVMFGATVTVSVYDEQTDSTGVMQYQIVGEYEADVSKNM 134
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
+SI SP+ +L+G+ GD + V P G+ Y+I+++ ++
Sbjct: 135 ISIKSPLVLSLLGRREGDSVEVKTPRGDYKIYQIMKIEFV 174
>gi|114049374|ref|YP_739924.1| transcription elongation factor GreB [Shewanella sp. MR-7]
gi|113890816|gb|ABI44867.1| transcription elongation factor GreB [Shewanella sp. MR-7]
Length = 161
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +GF+K+ EL +E RP I K ++ A + GD SENA+Y+ K L + R+ L
Sbjct: 8 ITREGFEKLNAELNHLWREYRPEITKKVAWAASLGDRSENADYKENKRLLRQIDSRVRYL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I +V++ S ++ FGA V + + GD K+++IVG E ++ +SI +P+
Sbjct: 68 RKRIEAVKVVEYSPQQDGKVFFGAWVQIEN-DDGDIKSFRIVGPDEIYGRNDYISIDAPM 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + D + V P GE+ + + + +
Sbjct: 127 ARALLKKAVDDEVIVQTPVGEQMWYVNSISY 157
>gi|297588655|ref|ZP_06947298.1| transcription elongation factor GreA [Finegoldia magna ATCC 53516]
gi|297574028|gb|EFH92749.1| transcription elongation factor GreA [Finegoldia magna ATCC 53516]
Length = 159
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T +G D+ ++EL + + R I + I AR +GDLSENAEY AK Q
Sbjct: 1 MADKEFLLTQEGLDQHKEELEFLKTTRRTEIAEKIKVARGFGDLSENAEYDEAKNEQAQV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ LEN++ A+VI D + G+TV+ S + Y+IVG E+D +G
Sbjct: 61 EERINYLENLLLYAKVIQDDENQKDVVTVGSTVTYKNLKSNKEMTYKIVGTAESDPFAGR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP +AL+ ++GD +V PGG ++L V
Sbjct: 121 ISNESPTGKALLNLKVGDTTTVETPGGIVELKVLTVK 157
>gi|254252970|ref|ZP_04946288.1| Transcription elongation factor [Burkholderia dolosa AUO158]
gi|124895579|gb|EAY69459.1| Transcription elongation factor [Burkholderia dolosa AUO158]
Length = 187
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLKDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S + D++ FGATV + GD+ IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQENTDQVFFGATVDYATPD-GDEHTITIVGIDEVDLDRGHVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALI ++GD +++ P G + ++L V +
Sbjct: 147 ISPIARALIKAKVGDTVTLMTPAGPQPIDVLDVRY 181
>gi|255004667|ref|ZP_05279468.1| transcription elongation factor greA (greA) [Anaplasma marginale
str. Virginia]
Length = 172
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 72/160 (45%), Positives = 109/160 (68%), Gaps = 6/160 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +GF K++ EL + ERP+IIK+IS+AR GDLSENAEY AA+E Q L E ++
Sbjct: 14 RFPITRRGFQKLEAELEALKS-ERPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 72
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSGDK--KNYQIVGDQEADVQSGL 119
ELE+ +RAEVID+S +SGD + FGATV+ + ++ + YQIVG+ EADV +
Sbjct: 73 MELESKRSRAEVIDVSELSGDTVMFGATVTVSVYDEQTDSTGVMQYQIVGEYEADVSKNM 132
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
+SI SP+ +L+G+ GD + V P G+ Y+I+++ ++
Sbjct: 133 ISIKSPLVLSLLGRREGDSVEVKTPRGDYKIYQIMKIEFV 172
>gi|190575306|ref|YP_001973151.1| transcription elongation factor GreB [Stenotrophomonas maltophilia
K279a]
gi|190013228|emb|CAQ46862.1| putative transcription elongation factor [Stenotrophomonas
maltophilia K279a]
Length = 168
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 83/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G +++ EL + RP ++KA++ A A GD SENAEY K+ + R+ L
Sbjct: 15 ITASGHARLKAELDDLWRVRRPEVVKALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + + FGA V L +SG+ Y+IVG E D G +SI SP+
Sbjct: 75 TKRLESLRVVDTTPTDPLAVFFGAWVELENVDSGETSRYRIVGPDETDAGLGWISIDSPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K L D SV PGG+ T+ ++ V +
Sbjct: 135 ARALLKKRLDDEFSVELPGGQFTFAVISVEY 165
>gi|225013112|ref|ZP_03703526.1| transcription elongation factor GreA [Flavobacteria bacterium
MS024-2A]
gi|225002770|gb|EEG40752.1| transcription elongation factor GreA [Flavobacteria bacterium
MS024-2A]
Length = 158
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 95/156 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T +G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q + E
Sbjct: 1 MSKVSYYTEEGLKKLRAELNHLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+A++EN+++ A +I+ S + ++ +TV + K +G Y +V EAD+++G +
Sbjct: 61 MHIAKMENVLSNARIINESELDTSKVLVLSTVEVKNKVNGGSMKYTLVAQSEADLKTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SPI + L+GK++G+I ++ P G E++ +
Sbjct: 121 SVDSPIGKGLLGKKVGEIAVISVPNGSIELEVISIS 156
>gi|254521999|ref|ZP_05134054.1| transcription elongation factor GreB [Stenotrophomonas sp. SKA14]
gi|219719590|gb|EED38115.1| transcription elongation factor GreB [Stenotrophomonas sp. SKA14]
Length = 168
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 56/151 (37%), Positives = 83/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G +++ EL + RP ++KA++ A A GD SENAEY K+ + R+ L
Sbjct: 15 ITAAGHARLKAELDELWRVRRPEVVKALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + + FGA V L +SGD Y+IVG E D G +SI SP+
Sbjct: 75 TKRLEALRVVDTTPTDPQAVFFGAWVDLENVDSGDTSRYRIVGPDETDAGLGWISIDSPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K L D SV PGG+ T+ ++ V +
Sbjct: 135 ARALLKKRLDDEFSVELPGGQFTFAVIGVEY 165
>gi|126172390|ref|YP_001048539.1| transcription elongation factor GreB [Shewanella baltica OS155]
gi|125995595|gb|ABN59670.1| transcription elongation factor GreB [Shewanella baltica OS155]
Length = 169
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L +G
Sbjct: 3 MKAHLITRQGWQTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDG 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +++D S +I FGA L +GD+ Y+IVG E D + G ++
Sbjct: 63 RVRYLVKRLEELKIVDYSPQQEGKIFFGAWFELEN-EAGDRVRYRIVGKDELDTKLGYIT 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALIGK++ D + V P G K + I Q+ +
Sbjct: 122 IDSPMARALIGKQVDDEVVVQTPSGPKEWYINQIRY 157
>gi|172058075|ref|YP_001814535.1| transcription elongation factor GreA [Exiguobacterium sibiricum
255-15]
gi|171990596|gb|ACB61518.1| transcription elongation factor GreA [Exiguobacterium sibiricum
255-15]
Length = 157
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T +G ++ EL + R +++ I AR++GDLSENAEY +AKE Q +
Sbjct: 1 MAEKQYYMTLEGKANVENELNELKSVRRKEVVENIKIARSFGDLSENAEYDSAKEEQAMV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+A+LE ++ +I + G TV+ + +++ Y IVG EAD +G
Sbjct: 61 EGRIAQLEEMLRNVAIISEDEKDISVVGIGTTVTFLILEDNEEETYTIVGSAEADPFTGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA++L G +G+ +SV APGG+ +I +
Sbjct: 121 ISNESPIAKSLFGHSVGEQVSVQAPGGDFAVKITSIK 157
>gi|167032925|ref|YP_001668156.1| transcription elongation factor GreB [Pseudomonas putida GB-1]
gi|166859413|gb|ABY97820.1| transcription elongation factor GreB [Pseudomonas putida GB-1]
Length = 156
Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTNIITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +V+ S ++ FGA V + + G+ ++IVG E ++ +S
Sbjct: 61 RVRYLRKRLEDVKVVAYSPQQEGKVFFGAWVEIEN-DEGETMKFRIVGYDEIYGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE GD + V+ P GE T+ + + +
Sbjct: 120 IDSPMARALLKKEEGDEVVVHTPTGEATWYVNSISY 155
>gi|312892424|ref|ZP_07751919.1| GreA/GreB family elongation factor [Mucilaginibacter paludis DSM
18603]
gi|311295208|gb|EFQ72382.1| GreA/GreB family elongation factor [Mucilaginibacter paludis DSM
18603]
Length = 157
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 101/156 (64%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D T +G +K+++EL++ + R I AI+EAR GDLSENAEY AAK+ Q +E
Sbjct: 1 MADVAYYTKEGLEKLKEELQYLKTTGRQIISNAIAEARDKGDLSENAEYDAAKDAQGHHE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE ++ A ++D S + ++ + V + +G +YQ+V + EAD++SG +
Sbjct: 61 AKIAKLEEAMSNARLLDDSKLDLSKVLALSIVKIKNLKNGATMSYQLVSESEADLKSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S +SPIA+ L+GK++G++I + P G+ +EIL++
Sbjct: 121 STASPIAKGLLGKKVGEVIEITVPAGKIDFEILEIS 156
>gi|88801364|ref|ZP_01116892.1| putative transcription elongation factor [Polaribacter irgensii
23-P]
gi|88782022|gb|EAR13199.1| putative transcription elongation factor [Polaribacter irgensii
23-P]
Length = 166
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 98/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + + +G K++ EL +Q ERPR+ I++AR GDLSENAEY AAKE Q+ E
Sbjct: 9 MSEISYYSPEGLKKLRDELVQLEQVERPRVTVEIADARDKGDLSENAEYHAAKEEQSHLE 68
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+L+N+I+ A ++D S + ++ + V + +G + Y++V D E DV++G +
Sbjct: 69 FKIAKLKNVISGARILDESQLDTSKVLIHSNVVIKNAINGAEFTYRLVADSETDVRNGKL 128
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S++SPI + L+GK++G++ + P G +EI+ +
Sbjct: 129 SVNSPIGKGLLGKKVGEVAEIQVPSGIMKFEIMAIS 164
>gi|127514564|ref|YP_001095761.1| transcription elongation factor GreB [Shewanella loihica PV-4]
gi|126639859|gb|ABO25502.1| transcription elongation factor GreB [Shewanella loihica PV-4]
Length = 160
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + +T +G+ + +EL++ +E RP I K + EA A GD SENA+Y K L +
Sbjct: 1 MKAMLITREGWQALDRELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +++D S ++ FGA V L + +G Y+IVG E D + G ++
Sbjct: 61 RVRYLVKRVEDLQIVDYSPQQEGKVFFGAWVELED-ETGKIVRYRIVGKDELDTKLGYIT 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALIGK++ D + VN P G+K + + ++ +
Sbjct: 120 IDSPMARALIGKQVDDEVVVNTPAGKKEWYVNKIQY 155
>gi|227432544|ref|ZP_03914528.1| elongation factor GreA [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227351722|gb|EEJ41964.1| elongation factor GreA [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 160
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 68/159 (42%), Positives = 100/159 (62%), Gaps = 3/159 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T++G DK+Q EL +RP I K I AR+YGDLSEN+EYQ+AK+ Q
Sbjct: 1 MSEEKIYPMTAEGRDKLQFELEDLIANQRPEITKRIQIARSYGDLSENSEYQSAKDEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ L+N+I AE+ID + + D ++ G TV+ E + + + Y IVG EAD +G
Sbjct: 61 VEGRIQTLKNMIDNAEIIDSNATAKDEVSLGKTVTFKELPNEEPETYAIVGSVEADPLAG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+S SP+A ALIGK++G+ ++V P G EI+ V
Sbjct: 121 KISNESPMANALIGKKVGETVAVPLPNGISIDVEIINVT 159
>gi|84386352|ref|ZP_00989380.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
gi|84378776|gb|EAP95631.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
Length = 165
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ ++ +G++K++ E E+RP I K ++ A + GD SENA+Y K L +
Sbjct: 1 MKTKLISREGYNKLKAEHDHLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + ++D S ++ FGA V + + +GD K ++IVG +E G +
Sbjct: 61 RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIENQ-AGDVKKFRIVGPEEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D V P G K + I + +
Sbjct: 120 SIDSPMARALLKKEVDDEFEVKTPDGVKEWYINSITY 156
>gi|228472777|ref|ZP_04057535.1| transcription elongation factor GreA [Capnocytophaga gingivalis
ATCC 33624]
gi|228275828|gb|EEK14594.1| transcription elongation factor GreA [Capnocytophaga gingivalis
ATCC 33624]
Length = 156
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 63/155 (40%), Positives = 93/155 (60%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ T +G ++ EL + ERPR +AI+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MKVAYYTEEGLKALKAELDQLRDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLEM 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++A+LE ++ A VID S + ++ +TV L K + Y +V + EAD+++G +S
Sbjct: 61 KIAKLEELVASARVIDESQLDTSKVLILSTVKLKNKANNAVMTYTLVAESEADLKTGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+SSPI R L+GK +GDI + P G EI+++
Sbjct: 121 VSSPIGRGLLGKSVGDIAEIKVPNGILQMEIIEIT 155
>gi|120596941|ref|YP_961515.1| transcription elongation factor GreB [Shewanella sp. W3-18-1]
gi|120557034|gb|ABM22961.1| transcription elongation factor GreB [Shewanella sp. W3-18-1]
gi|319424532|gb|ADV52606.1| GreA/GreB family elongation factor [Shewanella putrefaciens 200]
Length = 167
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L +
Sbjct: 1 MKAHLITRQGWLALDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +++D S +I FGA L ++G++ Y+IVG E D + G ++
Sbjct: 61 RVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELEN-DAGERVRYRIVGKDELDTKLGYIT 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALIGK++ D + V P G K + I ++ +
Sbjct: 120 IDSPMARALIGKQVDDEVVVQTPSGPKEWYINEIRY 155
>gi|197333913|ref|YP_002154890.1| transcription elongation factor GreB [Vibrio fischeri MJ11]
gi|197315403|gb|ACH64850.1| transcription elongation factor GreB [Vibrio fischeri MJ11]
Length = 155
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +GF+K+Q EL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTNLITREGFNKLQDELTFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + +V+D S +I FGA V + GD +++IVG E ++ +S
Sbjct: 61 RVRYLRKRLDQVKVVDYSPQQDGKIFFGAFVEIEN-EQGDTLSFRIVGPDEIFGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALI KE+ + + V P G+K + + + +
Sbjct: 120 IDSPMARALIKKEVDEDVIVKTPDGDKEWFVNSIKY 155
>gi|121593370|ref|YP_985266.1| transcription elongation factor GreB [Acidovorax sp. JS42]
gi|120605450|gb|ABM41190.1| transcription elongation factor GreB [Acidovorax sp. JS42]
Length = 186
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+ ++++EL +ERP++++ + A + GD SEN +Y K+ + R+
Sbjct: 27 KNYITPQGYARLRRELLDLIDDERPKVVEIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A+V+D S +G D++ FGATV+ E++ G ++ I+G EAD +S
Sbjct: 87 RFLTKRLEIADVVDPSVHAGSDQVFFGATVTYAEED-GVERTVTILGIDEADNSLQQISW 145
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ GD +++ P G +T EIL+V +
Sbjct: 146 ISPVARALLKAREGDEVTLQTPAGLRTLEILRVEY 180
>gi|229524693|ref|ZP_04414098.1| transcription elongation factor GreB [Vibrio cholerae bv. albensis
VL426]
gi|229338274|gb|EEO03291.1| transcription elongation factor GreB [Vibrio cholerae bv. albensis
VL426]
Length = 161
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L +
Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L ++ +++D S ++ FGA V + +GD K ++IVG +E +
Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGDVKKFRIVGPEEIYGDAKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ + V P G K + I + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVQTPTGIKEWFINSIEY 156
>gi|153002701|ref|YP_001368382.1| transcription elongation factor GreB [Shewanella baltica OS185]
gi|160877437|ref|YP_001556753.1| transcription elongation factor GreB [Shewanella baltica OS195]
gi|217975274|ref|YP_002360025.1| transcription elongation factor GreB [Shewanella baltica OS223]
gi|304412250|ref|ZP_07393858.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
gi|307306034|ref|ZP_07585779.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
gi|151367319|gb|ABS10319.1| transcription elongation factor GreB [Shewanella baltica OS185]
gi|160862959|gb|ABX51493.1| transcription elongation factor GreB [Shewanella baltica OS195]
gi|217500409|gb|ACK48602.1| transcription elongation factor GreB [Shewanella baltica OS223]
gi|304349285|gb|EFM13695.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
gi|306910907|gb|EFN41334.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
gi|315269639|gb|ADT96492.1| transcription elongation factor GreB [Shewanella baltica OS678]
Length = 167
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L +G
Sbjct: 1 MKAHLITRQGWQTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +++D S +I FGA L +GD+ Y+IVG E D + G ++
Sbjct: 61 RVRYLVKRLEELKIVDYSPQQEGKIFFGAWFELEN-EAGDRVRYRIVGKDELDTKLGYIT 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALIGK++ D + V P G K + I Q+ +
Sbjct: 120 IDSPMARALIGKQVDDEVVVQTPSGPKEWYINQIRY 155
>gi|264679927|ref|YP_003279836.1| Kelongation factor GreB [Comamonas testosteroni CNB-2]
gi|262210442|gb|ACY34540.1| Kelongation factor GreB [Comamonas testosteroni CNB-2]
Length = 231
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+ +I+ EL ERP+I++ + A + GD SEN +Y K+ + R+
Sbjct: 71 KNYITPQGYQRIKDELLDLIDNERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRI 130
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D + +G D++ FGATVS V+ + G ++ I+G EAD VS
Sbjct: 131 RFLTKRLEIAEVVDPAVHAGSDQVFFGATVSYVD-DEGVERTITIMGIDEADSAQNQVSW 189
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+P++RAL+ +GD +++ P G + EIL V +
Sbjct: 190 IAPVSRALLKARVGDEVALPTPAGVRMLEILDVSY 224
>gi|58582894|ref|YP_201910.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58427488|gb|AAW76525.1| transcription elongation factor and transcript cleavage
[Xanthomonas oryzae pv. oryzae KACC10331]
Length = 188
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 83/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L
Sbjct: 35 ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 94
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+
Sbjct: 95 SKRLEALRVVDTAPTDPNAVFFGAQVDLEDADSGELLRYRIVGPDETDAGRGWISIDSPL 154
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + D + P G+ T+ ++ V +
Sbjct: 155 ARALLKKRVDDEFDAHLPAGKHTFVVVSVDY 185
>gi|78048442|ref|YP_364617.1| transcription elongation factor GreB [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78036872|emb|CAJ24565.1| transcription elongation factor [Xanthomonas campestris pv.
vesicatoria str. 85-10]
Length = 168
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/152 (32%), Positives = 84/152 (55%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L
Sbjct: 15 ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+
Sbjct: 75 SKRLEALRVVDTAPTDANAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+ K + D + P G+ T+ ++ V ++
Sbjct: 135 ARALLKKRVDDEFDAHLPAGKHTFVVVSVQYV 166
>gi|86135044|ref|ZP_01053626.1| transcription elongation factor GreA [Polaribacter sp. MED152]
gi|85821907|gb|EAQ43054.1| transcription elongation factor GreA [Polaribacter sp. MED152]
Length = 157
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 101/156 (64%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D + +G K+++EL +Q ERPR+ + I++AR GDLSENAEY AAKE Q+ E
Sbjct: 1 MSDISYYSPEGLKKLKEELHQLEQVERPRVTQEIADARDKGDLSENAEYHAAKEEQSHLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+L+N++ A ++D S + +I + V + +G + +Y++V D E DV++G +
Sbjct: 61 TKIAKLKNVVANARILDESQLDTSKILIHSNVKIKNTANGMEFSYRLVADSETDVRNGKL 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S++SPI + L+GKE+G+I + P G +EI+++
Sbjct: 121 SVNSPIGKGLLGKEVGEIAEIQVPSGIMKFEIVEIT 156
>gi|146295865|ref|YP_001179636.1| transcription elongation factor GreA [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409441|gb|ABP66445.1| transcription elongation factor GreA [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 162
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 54/153 (35%), Positives = 91/153 (59%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K ++ + ++K +EL + +R + + I AR++GDLSEN+EY AK Q E R+
Sbjct: 9 KFQLSREAYEKYLKELENLKTVKRKEVAEKIKIARSFGDLSENSEYDEAKAEQAALEERI 68
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A LE +I A++ID +S D + G V + ++G+ Y IVG +EA+ +S
Sbjct: 69 AYLEKLINNAKIIDKDEVSTDFVGIGTNVKIQNVDTGEIVEYSIVGSKEANPFEFKISDE 128
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +ALIGK++G+++ V P G+ Y+IL++
Sbjct: 129 SPVGKALIGKKVGEVVEVTVPAGKFRYKILEIS 161
>gi|227329053|ref|ZP_03833077.1| transcription elongation factor GreB [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 158
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+DK++ E +RP I K +S A + GD SENA+Y K L +
Sbjct: 1 MKTNLITREGYDKLRAEHDHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLV 120
R+ L +T +++D S + FGA V + GD K +IVG E + +
Sbjct: 61 RVRYLRKCLTELKIVDYSPQQDGSVFFGAWVEIEN-EQGDVKRLRIVGPDEIYGDNKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SP+ARA++ K + + +VN P G + + + + ++
Sbjct: 120 SIDSPMARAMLKKAVDEEFTVNTPDGPREWFVNSIDYV 157
>gi|170016629|ref|YP_001727548.1| transcription elongation factor [Leuconostoc citreum KM20]
gi|238688945|sp|B1MX52|GREA_LEUCK RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|169803486|gb|ACA82104.1| Transcription elongation factor [Leuconostoc citreum KM20]
Length = 160
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 3/159 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T++G DK+Q EL +RP I I AR+YGDLSEN+EYQ+AK+ Q
Sbjct: 1 MSEEKVFPMTAEGRDKLQAELEDLITRQRPEITNRIQIARSYGDLSENSEYQSAKDEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ L+ +I AE+ID + + D ++ G TV+ E + + Y IVG E+D +G
Sbjct: 61 VEGRILTLKKMIENAEIIDPNATAADVVSLGKTVTFKELPDEEPETYAIVGSTESDPLAG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+S S +A AL+ K++GD +SV P GE EIL+V
Sbjct: 121 KISNESAMAVALLDKKVGDKVSVPLPSGESIDVEILKVE 159
>gi|262190726|ref|ZP_06048956.1| transcription elongation factor GreB [Vibrio cholerae CT 5369-93]
gi|262033403|gb|EEY51911.1| transcription elongation factor GreB [Vibrio cholerae CT 5369-93]
Length = 161
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L +
Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L ++ +++D S ++ FGA V + +GD K ++IVG +E +
Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGDVKKFRIVGPEEIYGDAKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ + V P G K + I + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVQTPTGMKEWFINSIEY 156
>gi|327485185|gb|AEA79592.1| Transcription elongation factor GreB [Vibrio cholerae LMA3894-4]
Length = 169
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L +
Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L ++ +++D S ++ FGA V + +GD K ++IVG +E +
Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGDVKKFRIVGPEEIYGDAKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ + V+ P G K + I + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPTGIKEWFINSIEY 156
>gi|323494580|ref|ZP_08099684.1| transcription elongation factor [Vibrio brasiliensis LMG 20546]
gi|323311183|gb|EGA64343.1| transcription elongation factor [Vibrio brasiliensis LMG 20546]
Length = 159
Score = 153 bits (386), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+D++++EL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTNLITREGYDRLKRELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + + +V+D S ++ FGA V + +G+ K+++IVG E G +
Sbjct: 61 RVRYLRKRLEQVKVVDYSPQQEGKVFFGAWVEIEN-EAGEIKSFRIVGPDEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D SV P G K + + Q+ +
Sbjct: 120 SIDSPMARALLKKEVDDEFSVKTPDGYKEWFVNQIRY 156
>gi|320539828|ref|ZP_08039487.1| transcription elongation factor [Serratia symbiotica str. Tucson]
gi|320030014|gb|EFW12034.1| transcription elongation factor [Serratia symbiotica str. Tucson]
Length = 157
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+ K++QEL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTQLITRQGYSKLKQELDYLWREERPEVTKKVACAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + +VI+ + ++ FGA V + ++GD K ++IVG E + +S
Sbjct: 61 RVRYLAQCLEQLKVINYAPQQEGKVFFGAWVEVEN-DNGDVKRFRIVGYDEIFGRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I +P+ARAL+ KE+GD VN P GE + I ++ +
Sbjct: 120 IDAPMARALLKKEVGDTAIVNTPQGEAWWHINKIEY 155
>gi|296137091|ref|YP_003644333.1| GreA/GreB family elongation factor [Thiomonas intermedia K12]
gi|295797213|gb|ADG32003.1| GreA/GreB family elongation factor [Thiomonas intermedia K12]
Length = 187
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL+ ++ERP++++ +S A GD SEN +Y K+ + R+
Sbjct: 30 KNYLTPLGYARLRAELKTLVEDERPKVVETVSWAAKNGDRSENGDYIYGKKRLREIDRRI 89
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S G D++ FGATV + + G + IVG E + G +S
Sbjct: 90 RFLTKRLDIAEVVDASLQHGNDQVFFGATVRYAD-DKGAEHTITIVGIDETEPLQGKISW 148
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ GD +S+ PGG T EIL+V +
Sbjct: 149 ISPVARALLKAREGDSVSLPTPGGIATLEILEVSY 183
>gi|209693811|ref|YP_002261739.1| transcription elongation factor GreB [Aliivibrio salmonicida
LFI1238]
gi|208007762|emb|CAQ77881.1| transcription elongation factor GreB [Aliivibrio salmonicida
LFI1238]
Length = 155
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +GF+K+Q EL + +E+RP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTNLITREGFNKLQDELTFLWKEDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + +V+D S ++ FGA ++E GD +++IVG E + +S
Sbjct: 61 RVRYLRKRLDQVKVVDYSPQQDGKVFFGA-FVVIENEQGDTLSFRIVGPDEIFGRHDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALI KE+ + V P G+K + + + +
Sbjct: 120 IDSPMARALIKKEVDEEAIVKTPEGDKEWFVNSIKY 155
>gi|311747366|ref|ZP_07721151.1| transcription elongation factor GreA [Algoriphagus sp. PR1]
gi|126579084|gb|EAZ83248.1| transcription elongation factor GreA [Algoriphagus sp. PR1]
Length = 157
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 96/157 (61%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T +G +++ EL+ + + R I K I+EAR GDLSENAEY AAK+ Q E
Sbjct: 1 MGKVQYYTEEGLKRLKDELQELKTKGRSDIAKQIAEARDKGDLSENAEYDAAKDAQGHLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE ++ A V D S M ++ +TV + +G +Y +V ++EAD+++G +
Sbjct: 61 LKIAKLEAVVGNARVFDNSQMDTSKVGILSTVKIKNVKNGMTVSYTLVSEEEADLKAGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+ SP + L+GK++G++ +NAP G +EIL++ +
Sbjct: 121 SLGSPFGKGLVGKKVGEVAEINAPAGALQFEILEISY 157
>gi|113866980|ref|YP_725469.1| transcription elongation factor GreB [Ralstonia eutropha H16]
gi|113525756|emb|CAJ92101.1| transcription elongation factor [Ralstonia eutropha H16]
Length = 187
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T++G+++++ EL +RP +++ +S A + GD SEN +Y K+ + R+
Sbjct: 29 KNYITAEGYNRLRNELMQLIDVDRPDVVQIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + +AEV+D S D+I FGATV+ + +G++ IVG E D+ S VS
Sbjct: 89 RFLTRRLDKAEVVDPSLQGDNDQIFFGATVTYANR-AGEETTITIVGMDEVDLDSNHVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA+ALI GD +++ P G + +IL+V +
Sbjct: 148 ISPIAKALIKAREGDTVALRTPAGVEQIDILEVRY 182
>gi|113461635|ref|YP_719704.1| transcription elongation factor GreB [Haemophilus somnus 129PT]
gi|112823678|gb|ABI25767.1| transcription elongation factor GreB [Haemophilus somnus 129PT]
Length = 158
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G++ + QEL++ ++ERP+I +A+S+A A GD SENAEY K +
Sbjct: 1 MPKSNYITRSGWNILDQELKYLWKDERPKITQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V+L + G++K Y+IVG E D +
Sbjct: 61 RRVRFLMKRLEVLQIVDYNPKQEGKVFFGAWVALED-EQGEEKQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGKE+ D I V P G + I ++ +
Sbjct: 120 SIDSPVARALIGKEVDDEIKVATPSGIVSLYINKIWY 156
>gi|145638522|ref|ZP_01794131.1| transcription elongation factor GreB [Haemophilus influenzae
PittII]
gi|145272117|gb|EDK12025.1| transcription elongation factor GreB [Haemophilus influenzae
PittII]
gi|309750026|gb|ADO80010.1| Transcription elongation factor GreB [Haemophilus influenzae R2866]
Length = 162
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V L + G+ K Y+IVG E +
Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GEIKQYRIVGCDEFAPPKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK L D + V+ P G T + ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVDTPSGFITLYVNKIWY 156
>gi|254428022|ref|ZP_05041729.1| transcription elongation factor GreB [Alcanivorax sp. DG881]
gi|196194191|gb|EDX89150.1| transcription elongation factor GreB [Alcanivorax sp. DG881]
Length = 165
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G+ K+ EL++ +E+RP + +A+ EA A GD SENAEY K+ + R+
Sbjct: 14 YITVEGYHKLNDELQYLWKEKRPVVTQAVQEAAAQGDRSENAEYIYGKKQLREIDRRVRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V+D RI FGA V L E G + Y++VG E D G +SI +P
Sbjct: 74 LSKRLDDMTVVDRVPEDQSRIFFGAWVEL-ETEDGGTETYRLVGPDETDAGRGYISIDAP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ K++ D ++V P GE+ I ++ +
Sbjct: 133 LARALLKKQVDDEVAVRTPAGERCLFINRIWY 164
>gi|251787893|ref|YP_003002614.1| transcription elongation factor GreB [Dickeya zeae Ech1591]
gi|247536514|gb|ACT05135.1| transcription elongation factor GreB [Dickeya zeae Ech1591]
Length = 160
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D S ++ FGA V + ++ GD K ++IVG E + +SI +P+
Sbjct: 66 RKRLQVVRVVDYSPQQDGKVFFGAWVEVENED-GDIKCFRIVGPDEIYGRKDYISIDAPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + + V+ P G K + + ++ +
Sbjct: 125 ARALLKKAVDEEAVVSTPAGPKVWYVNKIDY 155
>gi|153825544|ref|ZP_01978211.1| transcription elongation factor GreB [Vibrio cholerae MZO-2]
gi|254285910|ref|ZP_04960872.1| transcription elongation factor GreB [Vibrio cholerae AM-19226]
gi|149740829|gb|EDM54920.1| transcription elongation factor GreB [Vibrio cholerae MZO-2]
gi|150424092|gb|EDN16031.1| transcription elongation factor GreB [Vibrio cholerae AM-19226]
Length = 160
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L +
Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L ++ +++D S ++ FGA V + +GD K ++IVG +E +
Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGDVKKFRIVGPEEIYGDAKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ + V P G K + I + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVQTPTGMKEWFINSIEY 156
>gi|332975157|gb|EGK12059.1| transcription elongation factor GreA [Desmospora sp. 8437]
Length = 158
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M K + +T +G K++ EL + + R + + EA A GDLSENAEY AAKE Q
Sbjct: 1 MAQKKEVLLTEEGLAKVKDELELYRTKRRQDVANRLKEAIAQGDLSENAEYDAAKEEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ LEN++ A++ID T + + ++ GA V++ E GD++ Y IVG E+D SG
Sbjct: 61 VESRIMTLENMVRNAKIIDQDTQNKNFVSVGAKVTIQELPDGDEETYTIVGSAESDPISG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPI LIGK G+ I V AP G ++I+ +
Sbjct: 121 KISNESPIGAELIGKREGETIKVPAPSGTLEFKIISI 157
>gi|120556642|ref|YP_960993.1| transcription elongation factor GreB [Marinobacter aquaeolei VT8]
gi|120326491|gb|ABM20806.1| transcription elongation factor GreB [Marinobacter aquaeolei VT8]
Length = 171
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 9/165 (5%)
Query: 1 MVDKIP--------VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAA 52
M ++ P +T +G ++ EL++ + +RP + +A+ EA A GD SENAEY
Sbjct: 1 MANQTPSGNNRPRYITPEGEQALRDELQFLWKVKRPEVTQAVREAAALGDRSENAEYIYG 60
Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
K+ + R+ L + V+D R+ F A V++ +++ G ++ Y+IVG E
Sbjct: 61 KKQLREIDRRVRFLSKRLDEVSVVDRLPEDRSRVFFAAWVTIEDED-GSEQEYRIVGADE 119
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
D++ G +SI+SP+ARALIGK L D +SV P G K I + +
Sbjct: 120 FDLEKGYLSINSPLARALIGKHLDDEVSVRTPEGWKQVVITDIRY 164
>gi|255011567|ref|ZP_05283693.1| putative transcription elongation factor [Bacteroides fragilis
3_1_12]
gi|313149395|ref|ZP_07811588.1| transcription elongation factor greA [Bacteroides fragilis 3_1_12]
gi|313138162|gb|EFR55522.1| transcription elongation factor greA [Bacteroides fragilis 3_1_12]
Length = 154
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 59/152 (38%), Positives = 97/152 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +
Sbjct: 3 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+S+P
Sbjct: 63 LKAVIADAKIIDESKLKTDSVQILNKVELKNTKNGMKMTYTIVSESEANLKEGKISVSTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++GD+ + P G+ + E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEIQVPQGKISLEVVNISF 154
>gi|212637544|ref|YP_002314069.1| transcription elongation factor and transcript cleavage [Shewanella
piezotolerans WP3]
gi|212559028|gb|ACJ31482.1| Transcription elongation factor and transcript cleavage [Shewanella
piezotolerans WP3]
Length = 160
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ VT +GFDK+Q+EL + +E RP I K +S A + GD SENA+Y K+ +
Sbjct: 1 MRTNIVTREGFDKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKKKLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L I +V+D S ++ FGA V + + G+K++++IVG E ++ +S
Sbjct: 61 RVRYLRKTIENVQVVDYSPAQEGKVFFGAWVEIEN-DDGEKRSFKIVGYDEIFGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+AR L+ KE+ D ++ P GE+ + I ++ +
Sbjct: 120 IDSPMARGLLKKEVDDEAVIHTPAGEQVWYINRISY 155
>gi|288957371|ref|YP_003447712.1| transcription elongation factor [Azospirillum sp. B510]
gi|288909679|dbj|BAI71168.1| transcription elongation factor [Azospirillum sp. B510]
Length = 183
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T GF ++Q+ELR + ERP++++ +S A GD SEN +Y K+ + R+
Sbjct: 28 KNYMTPPGFQRMQEELRHLLRVERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRI 87
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V++ +++ FGATV+ + G + IVG E D G VS
Sbjct: 88 RFLNKRLESAVVVNPQDQKNREQVFFGATVTYA-REDGSENTVTIVGADEVDPDRGHVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ GD++ V P G + E+L++ +
Sbjct: 147 ISPIARALLKAREGDMVDVRTPAGMEQVEVLEIRY 181
>gi|227112177|ref|ZP_03825833.1| transcription elongation factor GreB [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 159
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+DK++ E +RP I K +S A + GD SENA+Y K L +
Sbjct: 1 MKTNLITREGYDKLRAEHDHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLV 120
R+ L +T +++D S + FGA V + G+ K +IVG E + +
Sbjct: 61 RVRYLRKCLTELKIVDYSPQQDGSVFFGAWVEIEN-EQGEVKRLRIVGPDEIYGDNKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SP+ARA++ K + + +VN P G + + + + ++
Sbjct: 120 SIDSPMARAMLKKAVDEEFTVNTPDGPREWFVNSIDYV 157
>gi|326803433|ref|YP_004321251.1| transcription elongation factor GreA [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651692|gb|AEA01875.1| transcription elongation factor GreA [Aerococcus urinae
ACS-120-V-Col10a]
Length = 159
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M ++ P+T +G ++++ EL + +RP +I I AR++GDLSEN+EY++AK Q++
Sbjct: 1 MSEQTFPMTVEGKERLEAELEDLKLNKRPEVISRIKVARSFGDLSENSEYESAKNEQSIL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E ++A++EN+I AE++D + D ++ G V E G+++ Y+IVG EAD G
Sbjct: 61 ESQIAKIENMIRYAEIVDPDALGKDTVSIGKRVKFQELPDGEEEEYEIVGKAEADPLGGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA ALIGK++GD + + PG + IL V
Sbjct: 121 ISNESPIANALIGKKVGDEVEIETPGEAFSVRILAVE 157
>gi|210623236|ref|ZP_03293675.1| hypothetical protein CLOHIR_01625 [Clostridium hiranonis DSM 13275]
gi|210153773|gb|EEA84779.1| hypothetical protein CLOHIR_01625 [Clostridium hiranonis DSM 13275]
Length = 159
Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 91/154 (59%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+I +T +GFDK++ EL + R + + + A +YGDLSENAEY AK+ Q E +
Sbjct: 5 KEILLTQEGFDKLEAELEELKIVGRKDVAEKLKVAISYGDLSENAEYDEAKKEQAELEEK 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ++EN+I +A +ID ++ ++ G+ V L + + ++ Y IVG EAD +G +S
Sbjct: 65 ILKIENMIRKATIIDEESIDLSKVTAGSIVKLYDYDFEEEVTYTIVGSTEADPFAGKISN 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPI +A++GK GD + V P G Y+IL +
Sbjct: 125 ESPIGKAILGKSEGDEVEVQVPDGVVKYKILSIS 158
>gi|327439572|dbj|BAK15937.1| transcription elongation factor [Solibacillus silvestris StLB046]
Length = 161
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 5/158 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T G K++ EL + +RP +++ I AR++GDLSEN+EY +AKE Q EGR
Sbjct: 5 KQYPMTLDGKQKLEDELNTLKTVKRPEVVERIKVARSFGDLSENSEYDSAKEEQGFVEGR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD----KKNYQIVGDQEADVQSG 118
++ +E ++ A +I S + I+ G TV+ E +G +++Y IVG EAD G
Sbjct: 65 ISLIEQMLRNAVIITEDETS-NTISLGKTVTFDELINGKRANFEESYTIVGSAEADPMEG 123
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK + D++ + PGGE IL+V
Sbjct: 124 KISNDSPIAKALMGKHVDDVVKLTTPGGEMEVIILEVK 161
>gi|300814578|ref|ZP_07094829.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon
836 str. F0141]
gi|300511197|gb|EFK38446.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon
836 str. F0141]
Length = 157
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 89/157 (56%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E
Sbjct: 1 MDKDIFFTPEGLEKIENEIEYLKTVRRKEVAERIKVALGYGDLSENSEYDEAKNEQAYVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE + A+VID ++ D + G+TV + + +SGD+ Y IVG EAD SG +
Sbjct: 61 ERIAKLEMMARNAKVIDEKDLNHDMVNVGSTVVVKDLDSGDEDEYTIVGSAEADPLSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S SP+ LIG ++GDI + P G Y++ + +
Sbjct: 121 SNESPVGAGLIGLKVGDITEIEIPDGIIKYKVCAISF 157
>gi|119776641|ref|YP_929381.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
gi|119769141|gb|ABM01712.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
Length = 165
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 2/158 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T KG++ + +EL++ +E RP I + EA A GD SENA+Y K L
Sbjct: 1 MTEKAHLITRKGWEALDKELKYLWKEYRPEITLKVQEAAAQGDRSENADYTYNKRLLRQI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ R+ L + +++D S ++ FGA V L + G Y+IVG E D + G
Sbjct: 61 DSRVRYLIKRLEVLKIVDYSPQQEGKVFFGAWVELEN-DEGAVVRYRIVGKDEIDTKKGY 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++I SP+ARALIGK++ D + V P G K + I ++ +
Sbjct: 120 ITIDSPMARALIGKQVDDEVVVQTPSGRKEWFINEIRY 157
>gi|149184452|ref|ZP_01862770.1| transcription elongation factor [Erythrobacter sp. SD-21]
gi|148831772|gb|EDL50205.1| transcription elongation factor [Erythrobacter sp. SD-21]
Length = 155
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 77/157 (49%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK+P+ ++G++K+ +L+ + ERPRI+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 1 MDKVPMLAEGYEKLTADLKVLRA-ERPRIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ +LE+ I+RA++ID +T+SGD++ FGATV+L++++ K YQIVG EAD G +S
Sbjct: 60 MIGDLEDKISRAQIIDPTTLSGDKVIFGATVTLLDEDDKPVK-YQIVGQTEADASKGRIS 118
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SPIARALIGK++ + + V P G+K Y I ++ +I
Sbjct: 119 YTSPIARALIGKQVEEEVEVTVPSGDKFYLIDKIEFI 155
>gi|227510504|ref|ZP_03940553.1| transcription elongation factor GreA [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227513513|ref|ZP_03943562.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC
11577]
gi|227524655|ref|ZP_03954704.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC
8290]
gi|227083386|gb|EEI18698.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC
11577]
gi|227088139|gb|EEI23451.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC
8290]
gi|227190156|gb|EEI70223.1| transcription elongation factor GreA [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 158
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 99/158 (62%), Gaps = 2/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T++G DK+Q+EL + +RP++++ I AR+YGDLSEN+EY++AK+ Q++
Sbjct: 1 MAEQESYPMTAEGRDKLQKELEDLKVNQRPKVVERIKIARSYGDLSENSEYESAKDEQSM 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ +E++I A++ID D + G V+ E + + Y IVG EAD SG
Sbjct: 61 LESRITTIEHMIQYAQIIDSHDSDKDEVTVGKAVTFKELPDEEPETYTIVGAAEADPMSG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ L+G L + + ++ P G+ +IL+V
Sbjct: 121 KISNDSPIAKGLLGHRLNEEVVIHIPAGDMKVKILEVK 158
>gi|77460238|ref|YP_349745.1| transcription elongation factor GreB [Pseudomonas fluorescens
Pf0-1]
gi|77384241|gb|ABA75754.1| transcription elongation factor [Pseudomonas fluorescens Pf0-1]
Length = 165
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 89/151 (58%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +++SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGEARMRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++V+ +++ FGA V++ +++ G + Y+IVG E D++ GL+SI SP+
Sbjct: 75 TKRLEASKVVSEKPSDPNKVYFGAWVTIEDED-GKQSRYRIVGPDELDLKLGLISIDSPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGK L + V P GE+ I+ + +
Sbjct: 134 ARALIGKALDAEVRVQTPTGEQFVYIVAIEY 164
>gi|304403741|ref|ZP_07385403.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus
YK9]
gi|304346719|gb|EFM12551.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus
YK9]
Length = 159
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 87/155 (56%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++ +T +G+DK+ EL + R + + + A +YGDL EN+EY +AK Q+ E
Sbjct: 4 AEEVILTQEGYDKLMAELEELKTTTRKELAERLKVAISYGDLKENSEYHSAKNDQSFVET 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ LEN+ A ++ + + G TV L + + Y IVG EAD+ + +S
Sbjct: 64 RIKTLENMFKHARIVQAEKLDTAVVQVGFTVKLHDVEFDEDVTYTIVGPAEADIMNNKLS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ + LIGK +G+ I+V AP G +Y+IL++
Sbjct: 124 YESPLGKELIGKSVGNAITVTAPSGLISYKILEIT 158
>gi|282882521|ref|ZP_06291142.1| transcription elongation factor GreA [Peptoniphilus lacrimalis
315-B]
gi|281297663|gb|EFA90138.1| transcription elongation factor GreA [Peptoniphilus lacrimalis
315-B]
Length = 157
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 89/157 (56%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E
Sbjct: 1 MDKDIFFTPEGLEKIENEIEYLKTVRRKEVAERIKVALGYGDLSENSEYDEAKNEQAYVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE + A+VID ++ D + G+TV + + +SGD+ Y IVG EAD SG +
Sbjct: 61 ERIAKLEMMARNAKVIDEKDLNNDMVNVGSTVVVKDLDSGDEDEYTIVGSAEADPLSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S SP+ LIG ++GDI + P G Y++ + +
Sbjct: 121 SNESPVGAGLIGLKVGDITEIEIPDGIIKYKVCAISF 157
>gi|90416385|ref|ZP_01224317.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2207]
gi|90332110|gb|EAS47324.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2207]
Length = 165
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 82/152 (53%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G K++ E+ + ERP++ + EA GD SEN +Y K + R+
Sbjct: 14 YITPEGASKMRAEVHQLWKVERPKVTHIVHEAAKNGDRSENGDYIYGKRRLREIDSRVRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L I A +++ ++ F A V++ +++SG++ Y++VG E D +SI SP
Sbjct: 74 LTKRIEDATIVEDKPRDPSKVFFAAWVTVEDEDSGEEHIYRLVGSDEIDSALNWISIDSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+GK + D ++V P G++ I ++ +
Sbjct: 134 MARALVGKSIDDEVNVKTPAGDRCLIITEISY 165
>gi|332284095|ref|YP_004416006.1| transcription elongation factor GreB [Pusillimonas sp. T7-7]
gi|330428048|gb|AEC19382.1| transcription elongation factor GreB [Pusillimonas sp. T7-7]
Length = 193
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T+ G+ +++ EL EERP +++ +S A + GD SEN +Y K+ + RM
Sbjct: 37 KNYITTAGYQRLRAELAHLMNEERPEVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRM 96
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV++ +T D++ FGATV + +G+ IVG EA+ G +S
Sbjct: 97 RFLTKRLEVAEVVNPATQPNKDQVFFGATVEYSD-KAGETFRVTIVGVDEAEPLQGRISW 155
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ GD +++ P G +IL+V +
Sbjct: 156 ISPVARALLKAREGDTVTLRTPAGVDELDILEVSY 190
>gi|148827761|ref|YP_001292514.1| transcription elongation factor GreB [Haemophilus influenzae
PittGG]
gi|148719003|gb|ABR00131.1| transcription elongation factor GreB [Haemophilus influenzae
PittGG]
Length = 158
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V L + G+ K Y+IVG E +
Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GEIKQYRIVGCDEFAPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK L D + V P G T + ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156
>gi|15644454|ref|NP_229506.1| transcription elongation factor GreA [Thermotoga maritima MSB8]
gi|7387720|sp|Q9X232|GREA_THEMA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|4982283|gb|AAD36773.1|AE001810_12 transcription elongation factor, greA/greB family [Thermotoga
maritima MSB8]
Length = 156
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+ +T +G++K+++EL +++ I + I EAR GDLSEN+EY+AAK Q
Sbjct: 1 MKKVRLTREGYEKLKKELEDLKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E I++ AE+I+ S S D + G V + ++G++ ++IV QEAD + +S
Sbjct: 61 RIMEIEQILSNAEIIEDSEES-DEVTLGKWVVIKNLDTGEEHKFRIVTPQEADFFAQKLS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ ++L+G+++GD++ V AP G + Y+++ V
Sbjct: 120 SDSPLGKSLLGRKVGDVVKVKAPSGVQRYQVIAV 153
>gi|258513604|ref|YP_003189826.1| transcription elongation factor GreA [Desulfotomaculum acetoxidans
DSM 771]
gi|257777309|gb|ACV61203.1| transcription elongation factor GreA [Desulfotomaculum acetoxidans
DSM 771]
Length = 158
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T G +++EL + R I I +A +GD+SEN+EY+ AK Q
Sbjct: 1 MKEKEVILTVAGLKNLEEELEQLKSVRRREIAARIKQAIEFGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A++ID + + + G+ V L + GD+ Y IVG EAD +
Sbjct: 61 EGRILTLEKMLRNAKIIDDENIDIEAVHIGSKVLLKDLEFGDEFEYTIVGSVEADPGASK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++GK G ++ VN P G YEI+ ++
Sbjct: 121 ISNESPVGKAILGKPKGSVVEVNVPAGILKYEIMDII 157
>gi|225026969|ref|ZP_03716161.1| hypothetical protein EUBHAL_01225 [Eubacterium hallii DSM 3353]
gi|224955705|gb|EEG36914.1| hypothetical protein EUBHAL_01225 [Eubacterium hallii DSM 3353]
Length = 160
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 63/155 (40%), Positives = 93/155 (60%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +TS+G ++ EL+ + +R I + I EAR GDLSENAEY AAK+ Q E
Sbjct: 4 AKKHILTSQGMQALEDELQDLKVVKRKEIAQKIKEAREQGDLSENAEYDAAKDEQRSMEA 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE II AEVID S D ++ G+TV ++ ++ Y+IVG E+D+ GL+S
Sbjct: 64 RIEELEKIIKNAEVIDESAYDKDTVSIGSTVKFYDEEFDEELEYRIVGSTESDILKGLIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ + LIG ++G+ + V +P G Y+IL +
Sbjct: 124 NESPLGKGLIGAKIGETVQVESPDGFSRYKILGIS 158
>gi|91216953|ref|ZP_01253916.1| transcription elongation factor greA [Psychroflexus torquis ATCC
700755]
gi|91184824|gb|EAS71204.1| transcription elongation factor greA [Psychroflexus torquis ATCC
700755]
Length = 158
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 91/156 (58%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T +G K++ E + ERP+ + I++AR GDLSENAEY AAKE Q + E
Sbjct: 1 MSKVSYYTEEGLKKLRAEFEQLRDVERPKASQDIADARDKGDLSENAEYDAAKEAQGMLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE ++ A VID S + ++ + V L + Y++V EAD+++G +
Sbjct: 61 MRLAKLEQVVANARVIDESQLDTSKVLIHSKVRLKNVKMNQEMTYKLVAQSEADLKAGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SPI + L+GKE GD + P G+ T+EIL+V
Sbjct: 121 SVDSPIGKGLLGKEAGDTAEIEVPSGKITFEILEVS 156
>gi|328474225|gb|EGF45030.1| transcription elongation factor GreA [Vibrio parahaemolyticus
10329]
Length = 152
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 63/145 (43%), Positives = 104/145 (71%), Gaps = 2/145 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G ++ EL + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRGEQMLRTELERLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M + ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENTGKVIFGSTVTLIDVDTDEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPG 145
S+SSPIAR LIGK GD +++ P
Sbjct: 120 SVSSPIARGLIGKMEGDEVAIQTPA 144
>gi|153802191|ref|ZP_01956777.1| transcription elongation factor GreB [Vibrio cholerae MZO-3]
gi|124122265|gb|EAY41008.1| transcription elongation factor GreB [Vibrio cholerae MZO-3]
Length = 161
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L +
Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L ++ +++D S ++ FGA V + +GD K ++IVG +E +
Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGDVKKFRIVGPEEIYGDAKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ + V+ P G K + I + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPTGIKEWFINSIEY 156
>gi|71279513|ref|YP_271605.1| transcription elongation factor GreB [Colwellia psychrerythraea
34H]
gi|71145253|gb|AAZ25726.1| transcription elongation factor GreB [Colwellia psychrerythraea
34H]
Length = 160
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+D++ +EL++ ++ERP+I +++SEA A GD SENAEY K +
Sbjct: 1 MKRSSYITRAGWDRLDKELKFLWKDERPKITRSVSEAAAQGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L ++ R+ FGA V+L+ ++ + Y++VG E DV+ G +
Sbjct: 61 RRVRFLMKRTEDLTIVYPDPQQEGRVFFGAWVTLINEDD-IEVVYRLVGPDEWDVKRGEI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+GK + D I VNAP GE+ ++I+ + +
Sbjct: 120 SIDSPMARALLGKAVDDEIVVNAPEGERVFDIVNISY 156
>gi|319775510|ref|YP_004137998.1| transcription elongation factor [Haemophilus influenzae F3047]
gi|329122448|ref|ZP_08251035.1| transcription elongation factor GreB [Haemophilus aegyptius ATCC
11116]
gi|317450101|emb|CBY86315.1| transcription elongation factor [Haemophilus influenzae F3047]
gi|327473730|gb|EGF19149.1| transcription elongation factor GreB [Haemophilus aegyptius ATCC
11116]
Length = 162
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ +EER ++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERSKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V L + G+ K Y+IVG E +
Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFAPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK L D + V P G T I ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156
>gi|288576392|ref|ZP_06394360.1| transcription elongation factor GreB [Neisseria mucosa ATCC 25996]
gi|288565631|gb|EFC87191.1| transcription elongation factor GreB [Neisseria mucosa ATCC 25996]
Length = 256
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+
Sbjct: 99 KNYITPVGWQALKDELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 158
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S
Sbjct: 159 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGVDEIDTAQNKISW 217
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LI GD + +N P G + EIL V +I
Sbjct: 218 ISPLARCLIKAREGDEVILNTPEGREEIEILSVEYI 253
>gi|153815947|ref|ZP_01968615.1| hypothetical protein RUMTOR_02192 [Ruminococcus torques ATCC 27756]
gi|317500711|ref|ZP_07958929.1| transcription elongation factor [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089814|ref|ZP_08338707.1| transcription elongation factor greA [Lachnospiraceae bacterium
3_1_46FAA]
gi|145846766|gb|EDK23684.1| hypothetical protein RUMTOR_02192 [Ruminococcus torques ATCC 27756]
gi|316897905|gb|EFV19958.1| transcription elongation factor [Lachnospiraceae bacterium
8_1_57FAA]
gi|330403511|gb|EGG83069.1| transcription elongation factor greA [Lachnospiraceae bacterium
3_1_46FAA]
Length = 161
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 88/155 (56%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E
Sbjct: 4 AKKRLLTYAGLKALEDELETLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEA 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ AEV+ + D+I G TV + + ++ ++IVG EA+ G +S
Sbjct: 64 RIEELEGILKNAEVVVEDEVDFDKINVGCTVKVFDITFDEEMEFKIVGSTEANSLVGKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +ALIGK++GD +SV GE Y++L++
Sbjct: 124 NESPVGQALIGKKVGDTVSVETQAGEIKYKVLEIS 158
>gi|313201051|ref|YP_004039709.1| transcription elongation factor greb [Methylovorus sp. MP688]
gi|312440367|gb|ADQ84473.1| transcription elongation factor GreB [Methylovorus sp. MP688]
Length = 164
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 2/159 (1%)
Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M D K +T +G+ ++ E + ERP+++ +S A + GD SEN +Y K
Sbjct: 1 MADQKNYITPEGYATLKAEFEQLYKIERPKVVSDVSWAASNGDRSENGDYIYGKRRLRQI 60
Query: 60 EGRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
+ R+ L + A ++D S +++ FGA VSL + +Y+IVG E D G
Sbjct: 61 DSRLRFLMKSMDLAVIVDPKEQQSLEKVFFGAWVSLYSLERDIEHHYRIVGQNELDPTRG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S SP+ARA++GK++GD++ P GE++YEI+ + +
Sbjct: 121 YISWISPLARAMLGKQIGDVVRAQTPAGEESYEIIDIRY 159
>gi|313499599|gb|ADR60965.1| GreB [Pseudomonas putida BIRD-1]
Length = 162
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTNIITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +V+ S ++ FGA V + + G+ ++IVG E ++ +S
Sbjct: 61 RVRYLRKRLEDVKVVAYSPEQEGKVFFGAWVEIEN-DEGETMKFRIVGYDEIYGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE GD + V+ P GE T+ + + +
Sbjct: 120 IDSPMARALLKKEEGDEVVVHTPTGEATWYVSSIRY 155
>gi|307132913|ref|YP_003884929.1| transcription elongation factor GreB [Dickeya dadantii 3937]
gi|306530442|gb|ADN00373.1| Transcription elongation factor GreB [Dickeya dadantii 3937]
Length = 166
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D S ++ FGA V + ++ GD K ++IVG E + +SI +P+
Sbjct: 66 RKRLQVVRVVDYSPQQDGKVFFGAWVEVENED-GDVKRFRIVGPDEIYGRKDYISIDAPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + + VN P G K + + ++ +
Sbjct: 125 ARALLKKAVDEEAVVNTPTGPKVWYVNKIDY 155
>gi|194289080|ref|YP_002004987.1| transcription elongation factor greb [Cupriavidus taiwanensis LMG
19424]
gi|193222915|emb|CAQ68920.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIPT CLEAVAGE FACTOR)
[Cupriavidus taiwanensis LMG 19424]
Length = 187
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T++G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + R+
Sbjct: 29 KNYITAEGYARLRNELMQLIDVERPDVVQIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + +AEV+D S D+I FGATV+ SG++ IVG E D+ VS
Sbjct: 89 RFLTRRLDKAEVVDPSLQGDNDQIFFGATVTYA-HASGEETTITIVGMDEVDLDHNHVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA+AL+ GD +++ P G + +IL+V +
Sbjct: 148 ISPIAKALLKAREGDTVALRTPAGVEQIDILEVRY 182
>gi|261823310|ref|YP_003261416.1| transcription elongation factor GreB [Pectobacterium wasabiae
WPP163]
gi|261607323|gb|ACX89809.1| transcription elongation factor GreB [Pectobacterium wasabiae
WPP163]
Length = 159
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+DK++ E +RP I K +S A + GD SENA+Y K L +
Sbjct: 1 MKTNLITREGYDKLRAEHEHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L +T +++D S + FGA V + GD K +IVG E +
Sbjct: 61 RVRYLRKCLTELKIVDYSPQQDGSVFFGAWVEIEN-EQGDVKRLRIVGPDEIYGDSKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SP+ARA++ K + + +VN P G + + + + ++
Sbjct: 120 SIDSPMARAMLKKAVDEEFTVNTPDGPREWFVNAIDYV 157
>gi|50123038|ref|YP_052205.1| transcription elongation factor GreB [Pectobacterium atrosepticum
SCRI1043]
gi|49613564|emb|CAG77015.1| transcription elongation factor [Pectobacterium atrosepticum
SCRI1043]
Length = 159
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+DK++ E +RP I K +S A + GD SENA+Y K L +
Sbjct: 1 MKTNLITREGYDKLRAEHEHLWNIKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + +++D S + FGA + + GD K +IVG E +
Sbjct: 61 RVRYLRKCLAELKIVDYSPQQDGSVFFGAWIEIEN-EQGDVKRLRIVGPDEIYGDSKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SP+ARA++ K + + +VN P G + + I + ++
Sbjct: 120 SIDSPMARAMLKKAVDEEFTVNTPDGPREWFINAIDYV 157
>gi|260774750|ref|ZP_05883653.1| transcription elongation factor GreB [Vibrio coralliilyticus ATCC
BAA-450]
gi|260609312|gb|EEX35464.1| transcription elongation factor GreB [Vibrio coralliilyticus ATCC
BAA-450]
Length = 158
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +GFD++++EL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTNLITREGFDRLKKELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-QSGLV 120
R+ L + + +V+D + ++ FGA V + +G+ K ++IVG E +
Sbjct: 61 RVRYLRKRLEQVKVVDYAPQQEGKVFFGAWVEVEN-EAGEVKKFRIVGPDEIYGGAKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D SV P GEK + + + +
Sbjct: 120 SIDSPMARALLKKEVDDEFSVKTPEGEKEWFVNSICY 156
>gi|153828361|ref|ZP_01981028.1| transcription elongation factor GreB [Vibrio cholerae 623-39]
gi|229513643|ref|ZP_04403107.1| transcription elongation factor GreB [Vibrio cholerae TMA 21]
gi|229521789|ref|ZP_04411207.1| transcription elongation factor GreB [Vibrio cholerae TM 11079-80]
gi|229527359|ref|ZP_04416751.1| transcription elongation factor GreB [Vibrio cholerae 12129(1)]
gi|261211278|ref|ZP_05925567.1| transcription elongation factor GreB [Vibrio sp. RC341]
gi|262166724|ref|ZP_06034461.1| transcription elongation factor GreB [Vibrio mimicus VM223]
gi|148876191|gb|EDL74326.1| transcription elongation factor GreB [Vibrio cholerae 623-39]
gi|229334991|gb|EEO00476.1| transcription elongation factor GreB [Vibrio cholerae 12129(1)]
gi|229341383|gb|EEO06387.1| transcription elongation factor GreB [Vibrio cholerae TM 11079-80]
gi|229349520|gb|EEO14476.1| transcription elongation factor GreB [Vibrio cholerae TMA 21]
gi|260839779|gb|EEX66390.1| transcription elongation factor GreB [Vibrio sp. RC341]
gi|262026440|gb|EEY45108.1| transcription elongation factor GreB [Vibrio mimicus VM223]
Length = 160
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L +
Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L ++ +++D S ++ FGA V + +GD K ++IVG +E +
Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGDVKKFRIVGPEEIYGDAKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ + V+ P G K + I + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPTGMKEWFINSIEY 156
>gi|319897915|ref|YP_004136112.1| transcription elongation factor [Haemophilus influenzae F3031]
gi|317433421|emb|CBY81802.1| transcription elongation factor [Haemophilus influenzae F3031]
Length = 158
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWLVLDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V L + G+ Y+IVG E +
Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETNQYRIVGCDEFAPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK L D + V P G T I ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156
>gi|302189947|ref|ZP_07266620.1| transcription elongation factor GreB [Pseudomonas syringae pv.
syringae 642]
Length = 157
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 2/158 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKI-ITRDGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ +
Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SP+ARAL+ KE+GD + VN P GEK + + + ++
Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIDYV 156
>gi|104781028|ref|YP_607526.1| transcription elongation factor GreB [Pseudomonas entomophila L48]
gi|95110015|emb|CAK14720.1| transcription elongation factor and transcript cleavage
[Pseudomonas entomophila L48]
Length = 157
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTNIITTEGHEALKKELDHLWRVYRPEITQKVTWAASLGDRSENADYQYNKKLLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +V+ S ++ FGA V + + GD+ ++IVG E ++ +S
Sbjct: 61 RVRYLRKRLEDVKVVSYSPQQEGKVFFGAWVEIEN-DEGDQLKFRIVGYDEIHGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE GD + V+ P GE T+ + + +
Sbjct: 120 IDSPMARALLKKEEGDEVVVHTPTGEATWYVNTISY 155
>gi|331007819|ref|ZP_08330923.1| Transcription elongation factor GreB [gamma proteobacterium
IMCC1989]
gi|330418373|gb|EGG92935.1| Transcription elongation factor GreB [gamma proteobacterium
IMCC1989]
Length = 168
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 84/153 (54%), Gaps = 1/153 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T++G + EL+ + ERP + + EA GD SEN +Y K+ + R+
Sbjct: 14 YITAEGAAHLTAELKQLWKVERPVVTDTVHEAAKNGDRSENGDYIYGKKRLREIDSRVRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + ++D + + + + FGA V+L++ + + + YQIVG E D+ +S+ SP
Sbjct: 74 LTKRLEELTIVDQAPANQNTVYFGAWVTLID-DDDNTQRYQIVGPDEFDISQQKISMDSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IA+AL+ K+LGD + + P G+ + I ++ +I
Sbjct: 133 IAKALLKKQLGDEVLIVTPNGDTLFYIEKIEYI 165
>gi|189459948|ref|ZP_03008733.1| hypothetical protein BACCOP_00581 [Bacteroides coprocola DSM 17136]
gi|189433321|gb|EDV02306.1| hypothetical protein BACCOP_00581 [Bacteroides coprocola DSM 17136]
Length = 202
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 58/152 (38%), Positives = 96/152 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ K+ EL+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q + E ++ +
Sbjct: 51 YMSEEGYQKLVAELKHLESVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINQ 110
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 111 LKATIGDAKIIDTSKLKADTVQILTRVELKNVKTGMKMAYTIVSETEANLKLGKISVNTP 170
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++GDI + P G+ + E+ + +
Sbjct: 171 IAQGLLGKKVGDIAEITIPQGKISLEVTGISF 202
>gi|148270136|ref|YP_001244596.1| transcription elongation factor GreA [Thermotoga petrophila RKU-1]
gi|281412522|ref|YP_003346601.1| GreA/GreB family elongation factor [Thermotoga naphthophila RKU-10]
gi|166201192|sp|A5ILE7|GREA_THEP1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|147735680|gb|ABQ47020.1| transcription elongation factor GreA [Thermotoga petrophila RKU-1]
gi|281373625|gb|ADA67187.1| GreA/GreB family elongation factor [Thermotoga naphthophila RKU-10]
Length = 156
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+ +T +G++K+++EL +++ I + I EAR GDLSEN+EY+AAK Q
Sbjct: 1 MKKVRLTREGYEKLKKELEDLKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E I++ AE+I+ S S D + G V + ++G++ ++IV QEAD + +S
Sbjct: 61 RIMEIEQILSNAEIIEDSEES-DEVTLGKWVVIKNLDTGEEHKFRIVTPQEADFFAQKLS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ ++L+G+++GD++ V AP G + Y+++ V
Sbjct: 120 SDSPLGKSLLGRKVGDVVKVKAPSGVQRYQVMAV 153
>gi|331701536|ref|YP_004398495.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL
B-30929]
gi|329128879|gb|AEB73432.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL
B-30929]
Length = 157
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 59/154 (38%), Positives = 95/154 (61%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D P+T+ G DK++ EL + +RP++++ I AR+YGDLSEN+EY++AK+ Q++ E R
Sbjct: 4 DTYPMTADGRDKLKAELEDLKVNQRPKVVERIKIARSYGDLSENSEYESAKDEQSMLESR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E+++ A++ID + D + G V+ E D + YQIVG EAD SG +S
Sbjct: 64 ITTIEHMLQYAQIIDSNDSDKDEVTVGKKVTFQELPDEDPETYQIVGAAEADPMSGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPIA+ LIG L + +++ P G +I +V
Sbjct: 124 DSPIAKGLIGHRLNEEVNIPIPAGTMKVKITKVE 157
>gi|260771182|ref|ZP_05880109.1| transcription elongation factor GreA [Vibrio furnissii CIP 102972]
gi|260613779|gb|EEX38971.1| transcription elongation factor GreA [Vibrio furnissii CIP 102972]
gi|315179211|gb|ADT86125.1| transcription elongation factor GreA [Vibrio furnissii NCTC 11218]
Length = 157
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +K+ ++ R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRG-EKLLRDELDRLLKLRPKISEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M +I FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60 QIRDIEFKLSVAQVIDVTKMDNSGKIIFGSTVTLIDVDTDEEKTYQIVGDDEADIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD ++++ PGGEK +EI V ++
Sbjct: 120 SVSSPIARGLIGKMEGDEVTISTPGGEKVFEIDHVDYV 157
>gi|217969791|ref|YP_002355025.1| transcription elongation factor GreB [Thauera sp. MZ1T]
gi|217507118|gb|ACK54129.1| transcription elongation factor GreB [Thauera sp. MZ1T]
Length = 184
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 89/155 (57%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+D ++ EL + ERP++++ ++ A GD SEN +Y K+ + R+
Sbjct: 29 KNYMTRRGYDALRVELDQLVRVERPKLVETVAWAAGNGDRSENGDYIYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I AEV+D G +++ FGATVS + ++ +++ QIVG EAD G +S
Sbjct: 89 RFLIKRIESAEVVDPERQQGLEQVFFGATVSFSDLDTAEEQTLQIVGVDEADASQGRISW 148
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARA++ +GD++ ++P G + EI V +
Sbjct: 149 ISPLARAVLKARVGDVVRFHSPAGVREIEIGAVEY 183
>gi|297581551|ref|ZP_06943474.1| transcription elongation factor GreB [Vibrio cholerae RC385]
gi|297534389|gb|EFH73227.1| transcription elongation factor GreB [Vibrio cholerae RC385]
Length = 160
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L +
Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L ++ +++D S ++ FGA V + +G+ K ++IVG +E +
Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGEVKKFRIVGPEEIYGDAKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ + V P G K + I + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVQTPTGMKEWFINSIEY 156
>gi|170720942|ref|YP_001748630.1| transcription elongation factor GreB [Pseudomonas putida W619]
gi|169758945|gb|ACA72261.1| transcription elongation factor GreB [Pseudomonas putida W619]
Length = 157
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTNIITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +V+ S ++ FGA V + + G+ ++IVG E ++ +S
Sbjct: 61 RVRYLRKRLEDVKVVAYSPQQEGKVFFGAWVEIEN-DDGETLKFRIVGYDEIYGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE GD + V+ P GE T+ + + +
Sbjct: 120 IDSPMARALLKKEKGDEVVVHTPTGEATWYVSSISY 155
>gi|166712646|ref|ZP_02243853.1| transcription elongation factor GreB [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 200
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 83/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L
Sbjct: 45 ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 104
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+
Sbjct: 105 SKRLEALRVVDTAPTEPNAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 164
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + D + P G+ T+ ++ V +
Sbjct: 165 ARALLKKRVDDEFDAHLPAGKHTFVVVSVHY 195
>gi|295677338|ref|YP_003605862.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
gi|295437181|gb|ADG16351.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
Length = 189
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL ERP ++K +S A + GD SEN +Y K + R+
Sbjct: 29 KNYMTPAGHRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S D++ FGATV G++ IVG E D+ G VS
Sbjct: 89 RFLTKRLDLAEVVDSSRQENVDQVFFGATVDYA-TEDGEEHKVTIVGVDEVDLDIGHVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ ++GD +++ P G + +IL V +
Sbjct: 148 ISPIARALLKAKVGDTVTLFTPAGPQPIDILDVKY 182
>gi|83748900|ref|ZP_00945911.1| GreB [Ralstonia solanacearum UW551]
gi|207743760|ref|YP_002260152.1| transcription elongation factor (transcript cleavage factor)
protein [Ralstonia solanacearum IPO1609]
gi|300703579|ref|YP_003745181.1| transcription elongation factor (transcript cleavage factor)
[Ralstonia solanacearum CFBP2957]
gi|83724466|gb|EAP71633.1| GreB [Ralstonia solanacearum UW551]
gi|206595159|emb|CAQ62086.1| transcription elongation factor (transcript cleavage factor)
protein [Ralstonia solanacearum IPO1609]
gi|299071242|emb|CBJ42560.1| Transcription elongation factor (Transcript cleavage factor)
[Ralstonia solanacearum CFBP2957]
Length = 187
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+
Sbjct: 29 KNYITPTGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I RAEV+D S D+I FGATV+ ++ GD+ IVG E D+ G VS
Sbjct: 89 RFLTRRIERAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLDKGYVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALI GD +++ P G +IL V +
Sbjct: 148 ISPIARALIKAREGDTVALRTPTGVAQIDILAVTY 182
>gi|146294891|ref|YP_001185315.1| transcription elongation factor GreB [Shewanella putrefaciens
CN-32]
gi|145566581|gb|ABP77516.1| transcription elongation factor GreB [Shewanella putrefaciens
CN-32]
Length = 160
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +GFDK+ EL + +E RP I K ++ A + GD SENA+Y+ K L +
Sbjct: 1 MKTNLITREGFDKLNAELNYLWREYRPEITKKVAWAASLGDRSENADYKENKRLLRQIDS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L I ++++ S ++ FGA V + ++G+ K+++IVG E ++ +S
Sbjct: 61 RVRYLRKRIEAVKIVEYSPQQDGKVFFGAWVQIEN-DAGEIKSFRIVGPDEIYGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I +P+ARAL+ KE+ D + V+ P GE T+ + + +
Sbjct: 120 IDAPMARALLKKEVDDEVVVSTPLGEHTWYVNSISY 155
>gi|300690932|ref|YP_003751927.1| transcription elongation factor (transcript cleavage factor)
[Ralstonia solanacearum PSI07]
gi|299077992|emb|CBJ50633.1| Transcription elongation factor (Transcript cleavage factor)
[Ralstonia solanacearum PSI07]
Length = 187
Score = 151 bits (383), Expect = 2e-35, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+
Sbjct: 29 KNYITPAGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I +AEV+D S D+I FGATV+ ++ GD+ IVG E D++ G VS
Sbjct: 89 RFLTRRIEKAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLEKGHVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALI GD +++ P G + +IL V +
Sbjct: 148 ISPIARALIKAREGDTVALRTPTGVEQIDILAVTY 182
>gi|253998948|ref|YP_003051011.1| transcription elongation factor GreB [Methylovorus sp. SIP3-4]
gi|253985627|gb|ACT50484.1| transcription elongation factor GreB [Methylovorus sp. SIP3-4]
Length = 169
Score = 151 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 2/159 (1%)
Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M D K +T +G+ ++ E + ERP+++ +S A + GD SEN +Y K
Sbjct: 6 MADQKNYITPEGYATLKAEFEQLYKIERPKVVSDVSWAASNGDRSENGDYIYGKRRLRQI 65
Query: 60 EGRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
+ R+ L + A ++D S +++ FGA VSL + +Y+IVG E D G
Sbjct: 66 DSRLRFLMKSMDLAVIVDPKEQQSLEKVFFGAWVSLYSLERDIEHHYRIVGQNELDPTRG 125
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S SP+ARA++GK++GD++ P GE++YEI+ + +
Sbjct: 126 YISWISPLARAMLGKQIGDVVRAQTPAGEESYEIIDIRY 164
>gi|85710775|ref|ZP_01041836.1| GreB [Idiomarina baltica OS145]
gi|85695179|gb|EAQ33116.1| GreB [Idiomarina baltica OS145]
Length = 169
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +GFD +Q+EL + ER ++ +S A + GD SENA+Y+ K+ +
Sbjct: 1 MKTNLITRRGFDMLQRELNQLWRVERRETVEKVSWAASLGDRSENADYKYNKQKLRRIDS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + +V+D S ++ FGA V + + G + +QIVG E +VS
Sbjct: 61 RIRYLTKRLDQLKVVDYSPQQDGQVFFGAFVEIED-EQGTIRRFQIVGPDEIYDSKDVVS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I +P+ARAL+ K + D ++V P GE+ + I ++ +
Sbjct: 120 IDAPMARALLKKHVDDEVTVVTPKGEQCWFINKIQY 155
>gi|207723815|ref|YP_002254213.1| transcription elongation factor (transcript cleavage factor)
protein [Ralstonia solanacearum MolK2]
gi|206589020|emb|CAQ35982.1| transcription elongation factor (transcript cleavage factor)
protein [Ralstonia solanacearum MolK2]
Length = 187
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+
Sbjct: 29 KNYITPTGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I RAEV+D S D+I FGATV+ ++ GD+ IVG E D+ G VS
Sbjct: 89 RFLTRRIERAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLDKGYVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALI GD +++ P G +IL V +
Sbjct: 148 ISPIARALIKAREGDTVALRTPTGVAQIDILAVTY 182
>gi|15642709|ref|NP_232342.1| transcription elongation factor GreB [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121586617|ref|ZP_01676402.1| transcription elongation factor GreB [Vibrio cholerae 2740-80]
gi|121726717|ref|ZP_01679942.1| transcription elongation factor GreB [Vibrio cholerae V52]
gi|147675721|ref|YP_001218203.1| transcription elongation factor GreB [Vibrio cholerae O395]
gi|153817456|ref|ZP_01970123.1| transcription elongation factor GreB [Vibrio cholerae NCTC 8457]
gi|153821253|ref|ZP_01973920.1| transcription elongation factor GreB [Vibrio cholerae B33]
gi|227082829|ref|YP_002811380.1| transcription elongation factor GreB [Vibrio cholerae M66-2]
gi|229507237|ref|ZP_04396742.1| transcription elongation factor GreB [Vibrio cholerae BX 330286]
gi|229509842|ref|ZP_04399323.1| transcription elongation factor GreB [Vibrio cholerae B33]
gi|229516963|ref|ZP_04406409.1| transcription elongation factor GreB [Vibrio cholerae RC9]
gi|229606743|ref|YP_002877391.1| transcription elongation factor GreB [Vibrio cholerae MJ-1236]
gi|254851252|ref|ZP_05240602.1| transcription elongation factor GreB [Vibrio cholerae MO10]
gi|255744327|ref|ZP_05418279.1| transcription elongation factor GreB [Vibrio cholera CIRS 101]
gi|262158563|ref|ZP_06029678.1| transcription elongation factor GreB [Vibrio cholerae INDRE 91/1]
gi|262170043|ref|ZP_06037732.1| transcription elongation factor GreB [Vibrio cholerae RC27]
gi|298500470|ref|ZP_07010274.1| transcription elongation factor GreB [Vibrio cholerae MAK 757]
gi|25453013|sp|Q9KNL7|GREB_VIBCH RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|9657312|gb|AAF95855.1| transcription elongation factor GreB [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121549176|gb|EAX59209.1| transcription elongation factor GreB [Vibrio cholerae 2740-80]
gi|121630878|gb|EAX63260.1| transcription elongation factor GreB [Vibrio cholerae V52]
gi|126512042|gb|EAZ74636.1| transcription elongation factor GreB [Vibrio cholerae NCTC 8457]
gi|126521185|gb|EAZ78408.1| transcription elongation factor GreB [Vibrio cholerae B33]
gi|146317604|gb|ABQ22143.1| transcription elongation factor GreB [Vibrio cholerae O395]
gi|227010717|gb|ACP06929.1| transcription elongation factor GreB [Vibrio cholerae M66-2]
gi|227014601|gb|ACP10811.1| transcription elongation factor GreB [Vibrio cholerae O395]
gi|229346026|gb|EEO10998.1| transcription elongation factor GreB [Vibrio cholerae RC9]
gi|229353316|gb|EEO18255.1| transcription elongation factor GreB [Vibrio cholerae B33]
gi|229354742|gb|EEO19663.1| transcription elongation factor GreB [Vibrio cholerae BX 330286]
gi|229369398|gb|ACQ59821.1| transcription elongation factor GreB [Vibrio cholerae MJ-1236]
gi|254846957|gb|EET25371.1| transcription elongation factor GreB [Vibrio cholerae MO10]
gi|255737852|gb|EET93245.1| transcription elongation factor GreB [Vibrio cholera CIRS 101]
gi|262021451|gb|EEY40163.1| transcription elongation factor GreB [Vibrio cholerae RC27]
gi|262029724|gb|EEY48373.1| transcription elongation factor GreB [Vibrio cholerae INDRE 91/1]
gi|297540639|gb|EFH76696.1| transcription elongation factor GreB [Vibrio cholerae MAK 757]
Length = 161
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L +
Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L ++ +++D S ++ FGA V + +G+ K ++IVG +E +
Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGEVKKFRIVGPEEIYGDAKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ + V+ P G K + I + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPTGIKEWFINSIEY 156
>gi|297566642|ref|YP_003685614.1| transcription elongation factor GreA [Meiothermus silvanus DSM
9946]
gi|296851091|gb|ADH64106.1| transcription elongation factor GreA [Meiothermus silvanus DSM
9946]
Length = 159
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 91/153 (59%), Gaps = 1/153 (0%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T++G ++Q EL + +R I A +A GDL ENA Y A+ Q N+ R++
Sbjct: 7 VYLTAEGLKRLQDELTTLKTVKRQEIAAAFEQAIEEGDLRENAGYDEARRAQWDNDRRIS 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELE+I+ RA V++ + + G +V L E ++G + + IVG EADV +G +S S
Sbjct: 67 ELESILARAVVVEAGNGTPLEVGLGVSVEL-ETDTGARMSLTIVGSHEADVFNGKISNES 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ + L+GK++GD + +P G ++Y I+++ +
Sbjct: 126 PMGQRLMGKKVGDRVEYPSPKGVQSYTIVELSY 158
>gi|26989039|ref|NP_744464.1| transcription elongation factor GreB [Pseudomonas putida KT2440]
gi|37999626|sp|Q88KH5|GREB_PSEPK RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|24983864|gb|AAN67928.1|AE016425_5 transcription elongation factor GreB [Pseudomonas putida KT2440]
Length = 162
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T++G + +++EL + RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTNIITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +V+ S ++ FGA V + + G+ ++IVG E ++ +S
Sbjct: 61 RVRYLRKRLEDVKVVAYSPEQEGKVFFGAWVEIEN-DEGETMKFRIVGYDEIYGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE GD + V+ P GE T+ + + +
Sbjct: 120 IDSPMARALLKKEEGDEVVVHTPTGEATWYVSSIRY 155
>gi|124515276|gb|EAY56786.1| putative transcription elongation factor GreA [Leptospirillum
rubarum]
gi|206601580|gb|EDZ38063.1| Putative transcription elongation factor GreA [Leptospirillum sp.
Group II '5-way CG']
Length = 160
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 68/156 (43%), Positives = 105/156 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++++P+T G++K+++EL + EERP+ I+ I+EARA+GDLSENAEY AAKE Q
Sbjct: 1 MNQVPMTKAGYEKLKEELEKLKHEERPKNIQDIAEARAHGDLSENAEYHAAKERQGFINS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I A V+ + RI FGATV LV +S ++K Y +VG +EAD+++G +S
Sbjct: 61 RIKELEAKIASAIVVSSAHQDHSRITFGATVRLVPLDSKEEKRYTLVGQEEADLKAGRIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+ +ALIG G+ +++ P GE Y I ++ +
Sbjct: 121 VHSPVGKALIGHSEGETVTIRVPAGEVQYTIAEIFY 156
>gi|237713952|ref|ZP_04544433.1| transcription elongation factor greA [Bacteroides sp. D1]
gi|237722892|ref|ZP_04553373.1| transcription elongation factor greA [Bacteroides sp. 2_2_4]
gi|262409139|ref|ZP_06085683.1| transcription elongation factor GreB [Bacteroides sp. 2_1_22]
gi|294647463|ref|ZP_06725046.1| putative transcription elongation factor GreA [Bacteroides ovatus
SD CC 2a]
gi|294808933|ref|ZP_06767658.1| putative transcription elongation factor GreA [Bacteroides
xylanisolvens SD CC 1b]
gi|298482232|ref|ZP_07000419.1| transcription elongation factor GreA [Bacteroides sp. D22]
gi|229446108|gb|EEO51899.1| transcription elongation factor greA [Bacteroides sp. D1]
gi|229447414|gb|EEO53205.1| transcription elongation factor greA [Bacteroides sp. 2_2_4]
gi|262352886|gb|EEZ01982.1| transcription elongation factor GreB [Bacteroides sp. 2_1_22]
gi|292637173|gb|EFF55608.1| putative transcription elongation factor GreA [Bacteroides ovatus
SD CC 2a]
gi|294443868|gb|EFG12610.1| putative transcription elongation factor GreA [Bacteroides
xylanisolvens SD CC 1b]
gi|295085264|emb|CBK66787.1| transcription elongation factor GreA [Bacteroides xylanisolvens
XB1A]
gi|298271519|gb|EFI13093.1| transcription elongation factor GreA [Bacteroides sp. D22]
Length = 176
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 58/151 (38%), Positives = 94/151 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +
Sbjct: 25 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 84
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 85 LKATIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 144
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+GK++GD+ + P G+ E++ +
Sbjct: 145 IAQGLLGKKVGDVAEITVPQGKIALEVVNIS 175
>gi|225375161|ref|ZP_03752382.1| hypothetical protein ROSEINA2194_00785 [Roseburia inulinivorans DSM
16841]
gi|225213035|gb|EEG95389.1| hypothetical protein ROSEINA2194_00785 [Roseburia inulinivorans DSM
16841]
Length = 159
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 60/155 (38%), Positives = 93/155 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K +T +G K++ EL+ + R + I EAR GDLSENAEY AAK+ Q E
Sbjct: 1 MDKKNILTYQGLKKLEDELQELKVVRRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E I+ AEV+ + D+I+ G V +++ ++ Y+IVG EA+ G +
Sbjct: 61 ARIEDIEKILKNAEVVVEEEVDLDKISIGCNVKILDIEFDEELEYKIVGSTEANSLKGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+GK++GDI+ V PGGE Y++L +
Sbjct: 121 SNESPVGKALLGKQVGDIVKVETPGGEFEYKVLSI 155
>gi|326793978|ref|YP_004311798.1| transcription elongation factor GreB [Marinomonas mediterranea
MMB-1]
gi|326544742|gb|ADZ89962.1| transcription elongation factor GreB [Marinomonas mediterranea
MMB-1]
Length = 181
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 57/152 (37%), Positives = 86/152 (56%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G DK+ EL++ +E+RP + + +S+A GD SENAEY K+ + R+
Sbjct: 28 YLTKEGADKLLAELKYLWKEKRPAVTQTVSDAAKQGDRSENAEYIYGKKQLREIDRRVRY 87
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + V+D + RI FGA V+L E G + ++IVG E D S +SI SP
Sbjct: 88 LEKRLDHCTVVDRAPNDVSRIFFGAWVTL-EHEDGKLETFRIVGPDELDHHSDYISIDSP 146
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+AL+ KE GD +++ GEK Y I V +
Sbjct: 147 VAKALLKKEEGDEVTIRRAEGEKLYYIDSVEY 178
>gi|323497027|ref|ZP_08102050.1| transcription elongation factor [Vibrio sinaloensis DSM 21326]
gi|323317871|gb|EGA70859.1| transcription elongation factor [Vibrio sinaloensis DSM 21326]
Length = 160
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +GFD++++EL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTNLITREGFDRLKKELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + + +V+D + ++ FGA V + +G+ K+++IVG E G +
Sbjct: 61 RVRYLRKRLEQVKVVDYAPQQEGKVFFGAWVEIEN-EAGEVKSFRIVGPDEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D SV P G K + + ++ +
Sbjct: 120 SIDSPMARALLKKEVDDEFSVKTPEGYKEWFVNRISY 156
>gi|320162389|ref|YP_004175614.1| transcription elongation factor GreA [Anaerolinea thermophila
UNI-1]
gi|319996243|dbj|BAJ65014.1| transcription elongation factor GreA [Anaerolinea thermophila
UNI-1]
Length = 155
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ K+Q+EL + + ++R I + + EA G+L ENAEY+AAK Q E
Sbjct: 1 MPTTPFLTREGYAKLQEELEYLRTKKREEIAQRLHEAMEGGELIENAEYEAAKNEQAFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE ++ A++I+ G+ + G+ V++ E+ + + Y IVG EA+ G +
Sbjct: 61 GRIKELEYLLASAKIIEEGGTHGNVVQVGSRVTIQEEGAEPEV-YTIVGAAEANPVLGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +ALIGK+ GD + V+AP G IL+V
Sbjct: 120 SNESPLGKALIGKKAGDNVQVDAPQGSFRVTILKVE 155
>gi|115350916|ref|YP_772755.1| transcription elongation factor GreB [Burkholderia ambifaria AMMD]
gi|170698517|ref|ZP_02889588.1| transcription elongation factor GreB [Burkholderia ambifaria
IOP40-10]
gi|171315539|ref|ZP_02904775.1| transcription elongation factor GreB [Burkholderia ambifaria MEX-5]
gi|172059929|ref|YP_001807581.1| transcription elongation factor GreB [Burkholderia ambifaria
MC40-6]
gi|115280904|gb|ABI86421.1| transcription elongation factor GreB [Burkholderia ambifaria AMMD]
gi|170136601|gb|EDT04858.1| transcription elongation factor GreB [Burkholderia ambifaria
IOP40-10]
gi|171099376|gb|EDT44114.1| transcription elongation factor GreB [Burkholderia ambifaria MEX-5]
gi|171992446|gb|ACB63365.1| transcription elongation factor GreB [Burkholderia ambifaria
MC40-6]
Length = 187
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S D++ FGATV + G+ IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEDHTITIVGIDEVDLDHGCVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARALI ++GD +++ P G + ++L V +
Sbjct: 147 ISPVARALIKAKIGDTVTLMTPAGPQPIDVLDVRY 181
>gi|152997778|ref|YP_001342613.1| transcription elongation factor GreB [Marinomonas sp. MWYL1]
gi|150838702|gb|ABR72678.1| transcription elongation factor GreB [Marinomonas sp. MWYL1]
Length = 196
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 58/152 (38%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G + EL++ +E+RP + + + EA A GD SENAEY K+ + R+
Sbjct: 41 YITQEGAQALLAELKYLWKEKRPAVTETVREAAAQGDRSENAEYIYGKKQLREIDRRVRY 100
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + V+D +R+ FGA V+L + +G+ K Y+IVG E D S +SI SP
Sbjct: 101 LEKRLEVCTVVDRFPSDQERVFFGAWVTLED-EAGNLKEYRIVGPDELDHHSSYISIDSP 159
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ K+ GD + + GGEKTY I V +
Sbjct: 160 VARALLKKQEGDEVVIRLAGGEKTYIIDAVEY 191
>gi|17546871|ref|NP_520273.1| transcription elongation factor GreB [Ralstonia solanacearum
GMI1000]
gi|17429171|emb|CAD15859.1| probable transcription elongation factor (transcript cleavage
factor) protein [Ralstonia solanacearum GMI1000]
Length = 187
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+
Sbjct: 29 KNYITPAGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I RAEV+D S D+I FGATV+ ++ GD+ IVG E D+ G VS
Sbjct: 89 RFLTRRIERAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLDKGQVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALI GD +++ P G + +IL V +
Sbjct: 148 ISPIARALIKAREGDTVALRTPTGVEPIDILAVTY 182
>gi|68249169|ref|YP_248281.1| transcription elongation factor GreB [Haemophilus influenzae
86-028NP]
gi|148825152|ref|YP_001289905.1| transcription elongation factor GreB [Haemophilus influenzae
PittEE]
gi|68057368|gb|AAX87621.1| transcription elongation factor GreB [Haemophilus influenzae
86-028NP]
gi|148715312|gb|ABQ97522.1| transcription elongation factor GreB [Haemophilus influenzae
PittEE]
Length = 158
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWLVLDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V L + G+ K Y+IVG E +
Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GEIKQYRIVGCDEFAPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGK L D + V P G T I ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156
>gi|258620411|ref|ZP_05715449.1| Transcription elongation factor greB [Vibrio mimicus VM573]
gi|258626042|ref|ZP_05720898.1| Transcription elongation factor greB [Vibrio mimicus VM603]
gi|262170353|ref|ZP_06038031.1| transcription elongation factor GreB [Vibrio mimicus MB-451]
gi|262402001|ref|ZP_06078566.1| transcription elongation factor GreB [Vibrio sp. RC586]
gi|258581693|gb|EEW06586.1| Transcription elongation factor greB [Vibrio mimicus VM603]
gi|258587290|gb|EEW12001.1| Transcription elongation factor greB [Vibrio mimicus VM573]
gi|261891429|gb|EEY37415.1| transcription elongation factor GreB [Vibrio mimicus MB-451]
gi|262351973|gb|EEZ01104.1| transcription elongation factor GreB [Vibrio sp. RC586]
Length = 160
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L +
Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L ++ +++D S ++ FGA V + +G+ K ++IVG +E +
Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGEVKKFRIVGPEEIYGDAKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ + V+ P G K + I + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPTGMKEWFINSIEY 156
>gi|332185724|ref|ZP_08387471.1| transcription elongation factor GreA domain protein [Sphingomonas
sp. S17]
gi|332014082|gb|EGI56140.1| transcription elongation factor GreA domain protein [Sphingomonas
sp. S17]
Length = 158
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 74/157 (47%), Positives = 116/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+K+P+ +G+DK+ Q+LR + EERP+I+ AI EARA+GDLSENAEY AAKE Q E
Sbjct: 4 VEKMPMLQEGYDKLTQDLRRLK-EERPQIVDAIEEARAHGDLSENAEYHAAKERQGQIEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+A++E+ ++RA++ID +SGD+I FGATV+L++++ K YQIVG EAD ++G +S
Sbjct: 63 SIADIEDKLSRAQIIDPKDLSGDKIVFGATVTLLDEDDKPVK-YQIVGQTEADAKTGRIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SP+ RALIG+++ + + V P G++ Y + ++ +I
Sbjct: 122 YNSPLGRALIGRKVEEEVEVTVPSGDRYYLVSKIEFI 158
>gi|90412689|ref|ZP_01220690.1| transcription elongation factor GreB [Photobacterium profundum
3TCK]
gi|90326264|gb|EAS42683.1| transcription elongation factor GreB [Photobacterium profundum
3TCK]
Length = 156
Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+DK+++EL + +EERP I K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTNLITREGYDKLKKELDFLWREERPEITKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +V+D S ++ FGA V + + + ++K ++IVG E ++ +S
Sbjct: 61 RVRYLRKRLEVVKVVDYSPQQDGKVFFGAFVEIENEEA-EQKTFRIVGPDEIYGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE+ + V P G+K + + + +
Sbjct: 120 IDSPMARALLKKEVDEEFEVVTPQGKKLWFVNTIRY 155
>gi|198274274|ref|ZP_03206806.1| hypothetical protein BACPLE_00415 [Bacteroides plebeius DSM 17135]
gi|198272949|gb|EDY97218.1| hypothetical protein BACPLE_00415 [Bacteroides plebeius DSM 17135]
Length = 154
Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats.
Identities = 59/152 (38%), Positives = 98/152 (64%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ K+ EL+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ +
Sbjct: 3 YMSEEGYQKLVAELKHLESVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINQ 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 63 LKATIGDAKIIDTSKLKTDTVQILSRVELKNVKTGMKMAYTIVSESEANLKQGKISVNTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++GD+ + P G+ + EI+ + +
Sbjct: 123 IAQGLLGKKVGDVAEITIPQGKISLEIMGISF 154
>gi|327539251|gb|EGF25874.1| transcription elongation factor GreA [Rhodopirellula baltica WH47]
Length = 153
Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 98/151 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++KI+ E+ + EE P I++ I+EAR GDL ENAEY A +E Q + ++ EL
Sbjct: 1 MTREGYNKIKAEINRMENEEMPMIVQKIAEAREEGDLKENAEYHAQRENQGMLMAKINEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I RA +ID+S++ D + FG TV++ + GD++ + +VG + D SG + ++SP
Sbjct: 61 RDKIARASIIDVSSLPKDEVVFGCTVTVEDVAYGDEEQFTLVGAGDEDYDSGKILVTSPF 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ L+GK++G+ V+ P G+ ++IL++ +
Sbjct: 121 GQGLVGKKVGETAEVDVPAGKLKFKILKIEF 151
>gi|325923368|ref|ZP_08185038.1| transcription elongation factor GreB [Xanthomonas gardneri ATCC
19865]
gi|325546138|gb|EGD17322.1| transcription elongation factor GreB [Xanthomonas gardneri ATCC
19865]
Length = 187
Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 81/151 (53%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L
Sbjct: 34 ITPDGHARLKAELEDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 93
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + + FGA V L + +SGD +Y++VG E D G +SI SP+
Sbjct: 94 SKRLEALRVVDTAPTDPRAVFFGAQVELEDADSGDLLHYRVVGPDETDAGRGWISIDSPL 153
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + D P G+ T+ ++ V +
Sbjct: 154 ARALLKKRVDDEFEAQLPSGKYTFVVVSVDY 184
>gi|253987638|ref|YP_003038994.1| transcription elongation factor GreB [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253779088|emb|CAQ82248.1| transcription elongation factor greb (transcript cleavage facto
greb) [Photorhabdus asymbiotica]
Length = 157
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTKLITREGYNKLKKELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +D S ++ FGA V + G+ K ++IVG E + +S
Sbjct: 61 RVRYLTKSLEELRCVDYSPQQDGKVFFGAWVEIENAQ-GEIKRFRIVGYDEIFGRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
I SP+ARAL+ KE+GD + V+ P GE + + ++ ++
Sbjct: 120 IDSPMARALLKKEVGDSVIVHTPTGEVMWYVNEIEYV 156
>gi|170718655|ref|YP_001783851.1| transcription elongation factor GreB [Haemophilus somnus 2336]
gi|168826784|gb|ACA32155.1| transcription elongation factor GreB [Haemophilus somnus 2336]
Length = 158
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G++ + QEL++ ++ERP+I +A+S+A A GD SENAEY K +
Sbjct: 1 MPKSNYITRSGWNILDQELKYLWKDERPKITQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V+L + G++K Y+IVG E D +
Sbjct: 61 RRVRFLMKRLEVLQIVDYNPKQEGKVFFGAWVALED-EQGEEKQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALIGKE+ D I V P G + I ++ +
Sbjct: 120 SIDSPVARALIGKEVDDEIKVATPSGIVSLYINRIWY 156
>gi|257093983|ref|YP_003167624.1| transcription elongation factor GreB [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257046507|gb|ACV35695.1| transcription elongation factor GreB [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 188
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G +++ EL + ERP+++ + A + GD SENA+Y K + R+
Sbjct: 32 YITPGGHARLRSELEHLLRVERPQVVGVVQWAASNGDRSENADYIYGKRRLREIDRRIRF 91
Query: 66 LENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + AE++D + + +++ FGATV++ + G + YQIVG E D G +S S
Sbjct: 92 LTRRLDLAEIVDPARRENTEQVFFGATVTICD-EQGLENTYQIVGVDETDSARGHISWVS 150
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL+ GD + ++P G + E++ V +
Sbjct: 151 PLARALLKAREGDTVRFHSPLGWRQVEVVAVDY 183
>gi|126663046|ref|ZP_01734044.1| transcription elongation factor [Flavobacteria bacterium BAL38]
gi|126624704|gb|EAZ95394.1| transcription elongation factor [Flavobacteria bacterium BAL38]
Length = 158
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 97/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T++G K++ EL + ERP+ +AI+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MSTVSYYTAEGLKKLRDELDQLKSIERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++++E ++ A +ID S + + +TV + + +G + Y +V + EAD+++G +
Sbjct: 61 MRISKMEEVVANARLIDESQLDLSKALVLSTVKIKNQANGMEMKYTLVAESEADLKTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S++SPI + L+GK +G++ + P G +++L++
Sbjct: 121 SVTSPIGKGLLGKSVGEVAEIIVPNGVLKFDVLEIT 156
>gi|310829433|ref|YP_003961790.1| GreA/GreB family elongation factor [Eubacterium limosum KIST612]
gi|308741167|gb|ADO38827.1| GreA/GreB family elongation factor [Eubacterium limosum KIST612]
Length = 161
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 91/154 (59%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+++ +T +G D +++ L + + +R + I AR YGDLSENAEY AK Q EG
Sbjct: 7 EELVMTQEGLDNLKKRLEYLKTVKRYEVAARIKTAREYGDLSENAEYDEAKSEQGFVEGE 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++ELE I + +VID + + + + G+ V + + GD + Y+IVG E+D+ +S
Sbjct: 67 ISELEAKIKKVKVIDDNDIHTEDVGVGSIVKVKDLEFGDTEEYKIVGSAESDIAQNKLSN 126
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ R LIG ++G ++++ P GE YEIL +
Sbjct: 127 ESPVGRGLIGAKVGQVVTIPIPDGEVQYEILDIR 160
>gi|37524231|ref|NP_927575.1| transcription elongation factor GreB [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36783654|emb|CAE12506.1| Transcription elongation factor (transcript cleavage factor)
[Photorhabdus luminescens subsp. laumondii TTO1]
Length = 157
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K+++EL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTKLITREGYNKLKEELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +D S R+ FGA V + + G+ K ++IVG E + +S
Sbjct: 61 RVRYLTKSLEELRCVDYSPQQDGRVFFGAWVEIEN-DQGEIKRFRIVGYDEIFGRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE+GD V+ P G+ + + ++ +
Sbjct: 120 IDSPMARALLKKEVGDSAIVHTPTGKVLWYVNEIEY 155
>gi|194366636|ref|YP_002029246.1| transcription elongation factor GreB [Stenotrophomonas maltophilia
R551-3]
gi|194349440|gb|ACF52563.1| transcription elongation factor GreB [Stenotrophomonas maltophilia
R551-3]
Length = 168
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 80/151 (52%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G +++ EL + RP ++KA++ A A GD SENAEY K+ + R+ L
Sbjct: 15 ITASGHARLKAELDELWRVRRPEVVKALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + + FGA V L +SG Y+IVG E D G +SI SP+
Sbjct: 75 TKRLESLRVVDTTPTDPQAVFFGAWVELENVDSGQTSRYRIVGPDETDAGLGWISIDSPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K L D SV P G T+ ++ V +
Sbjct: 135 ARALLKKRLDDEFSVELPSGPHTFAVIGVEY 165
>gi|323143848|ref|ZP_08078514.1| transcription elongation factor GreB [Succinatimonas hippei YIT
12066]
gi|322416366|gb|EFY07034.1| transcription elongation factor GreB [Succinatimonas hippei YIT
12066]
Length = 207
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 86/157 (54%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++ K +T +G+D + QEL + E+RP + + +S A + GD SENA+YQ K L +
Sbjct: 3 IMGKPYITREGYDLLHQELDYLWLEKRPDVTQKVSWAASLGDRSENADYQYNKRLLAQID 62
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +V++ + ++ FGA V + + +IVG E ++ +
Sbjct: 63 RRIRYLRGCMNNLQVVEYNHQQDGKVFFGAYVEIEADDDESLMQVRIVGGDEIFGRTNYI 122
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+ SP+A+AL+GK GD SV+ P G + + I ++ +
Sbjct: 123 SVDSPMAKALLGKAEGDDASVHTPKGARIWYINRIAY 159
>gi|269958421|ref|YP_003328208.1| transcription elongation factor GreA [Anaplasma centrale str.
Israel]
gi|269848250|gb|ACZ48894.1| transcription elongation factor GreA [Anaplasma centrale str.
Israel]
Length = 166
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 71/160 (44%), Positives = 110/160 (68%), Gaps = 6/160 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T +GF K++ EL + ERP+IIK+IS+AR GDLSENAEY AA+E Q L E ++
Sbjct: 8 RFPITRRGFQKLEAELEALKS-ERPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 66
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSGDK--KNYQIVGDQEADVQSGL 119
ELE+ +RAEVID+S +SGD + FGATV+ + ++ + YQIVG+ EAD+ +
Sbjct: 67 MELESKRSRAEVIDVSELSGDTVMFGATVTVSVYDEQADSTGIMRYQIVGEYEADISKNM 126
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
+SI SP+ +L+G++ GD + V P G+ Y+I+++ ++
Sbjct: 127 ISIKSPLVLSLLGRKEGDTVEVKTPRGDYKIYQIIKIEFV 166
>gi|153853505|ref|ZP_01994885.1| hypothetical protein DORLON_00874 [Dorea longicatena DSM 13814]
gi|149753660|gb|EDM63591.1| hypothetical protein DORLON_00874 [Dorea longicatena DSM 13814]
Length = 160
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 88/155 (56%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T G ++ EL + +R I + I EAR GDLSENAEY AAK+ Q E
Sbjct: 3 AKKKLLTYAGLKALEDELENLKVVKRREIAQKIKEAREQGDLSENAEYDAAKDEQRDIEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ AEV+ + D+I G TV + + ++ +++VG EA+ G +S
Sbjct: 63 RIEELEAILKNAEVVVEDEVDFDKINIGCTVKVFDITFDEEMEFKLVGSTEANSLEGKIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+GK++GD+++V G Y++L +
Sbjct: 123 NESPVGQALMGKQIGDVVTVETQAGVMEYKVLDIS 157
>gi|206561354|ref|YP_002232119.1| transcription elongation factor GreB [Burkholderia cenocepacia
J2315]
gi|198037396|emb|CAR53331.1| transcription elongation factor [Burkholderia cenocepacia J2315]
Length = 187
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S D++ FGATV E G+ IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQENVDQVFFGATVDY-ETPDGEDHTVTIVGIDEVDLDRGCVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARALI ++GD +++ P G + +IL V +
Sbjct: 147 ISPVARALIKAKIGDTVTLMTPAGPQPIDILDVRY 181
>gi|282881506|ref|ZP_06290176.1| putative transcription elongation factor GreA [Prevotella
timonensis CRIS 5C-B1]
gi|281304617|gb|EFA96707.1| putative transcription elongation factor GreA [Prevotella
timonensis CRIS 5C-B1]
Length = 154
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 58/151 (38%), Positives = 89/151 (58%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ EL+ + E PR+ AI+EAR GDLSEN EY AAK Q R+
Sbjct: 3 YMSQEGYDKLVAELKQLETIELPRVRDAIAEARDKGDLSENFEYHAAKREQGRLLSRIRF 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ ++ A VID S +S D++ + V++ + K Y+IV EA+++ G +SI SP
Sbjct: 63 KQKVLEFARVIDTSRLSADKVGLLSKVTITNLGNKAKMTYRIVSAHEANMREGKISIHSP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+AL+ K+ GD ++V P G T I +V
Sbjct: 123 IAQALLDKKQGDEVTVRVPAGTITLHIDEVE 153
>gi|294625096|ref|ZP_06703742.1| transcription elongation factor GreB [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664556|ref|ZP_06729899.1| transcription elongation factor GreB [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292600605|gb|EFF44696.1| transcription elongation factor GreB [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605664|gb|EFF48972.1| transcription elongation factor GreB [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 168
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 83/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L
Sbjct: 15 ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+
Sbjct: 75 SKRLEALRVVDTAPTDANAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + D + P G+ T+ ++ V +
Sbjct: 135 ARALLKKRVDDEFDAHLPAGKHTFVVVSVDY 165
>gi|330721758|gb|EGG99749.1| Transcription elongation factor GreB [gamma proteobacterium
IMCC2047]
Length = 170
Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G ++Q E +RP++ +A+SEA A GD ENAEY K+ + R+
Sbjct: 14 YITPDGRQRLQDEFDQLWHVKRPQVTQAVSEAAAQGDRPENAEYIYGKKQLREIDSRLRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + +V+D R+ F A ++E +G++ Y+IVG E DV +S+ SP
Sbjct: 74 LSKRLEHLKVVDRLPADQTRLFFCAW-VMLENEAGEQLEYRIVGPDEFDVHPAYISMDSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+AL+ K+ GD + V AP G YEI+ V +
Sbjct: 133 TAKALMKKQTGDEVEVVAPSGSVYYEIIAVRY 164
>gi|167758613|ref|ZP_02430740.1| hypothetical protein CLOSCI_00953 [Clostridium scindens ATCC 35704]
gi|167663809|gb|EDS07939.1| hypothetical protein CLOSCI_00953 [Clostridium scindens ATCC 35704]
Length = 160
Score = 150 bits (380), Expect = 4e-35, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 86/155 (55%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T G ++ EL + +R + + I EAR GDLSENAEY AAK+ Q E
Sbjct: 3 AKKRLLTYAGLKALEDELENLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ AEV+ + ++I G TV + +K ++ ++IVG EA+ G +S
Sbjct: 63 RIEELEGILKNAEVVVEDEVDYNKINVGCTVKVFDKTFDEEMEFKIVGSTEANSLEGKIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +ALIG ++GD + V G YE+L +
Sbjct: 123 NESPVGQALIGCKVGDTVEVETQAGIMEYEVLNIS 157
>gi|187925055|ref|YP_001896697.1| transcription elongation factor GreB [Burkholderia phytofirmans
PsJN]
gi|187716249|gb|ACD17473.1| transcription elongation factor GreB [Burkholderia phytofirmans
PsJN]
Length = 189
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL +RP ++K +S A + GD SEN +Y K + R+
Sbjct: 29 KNYITPAGYRRMRDELLHLIDVDRPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S D++ FGATV ++ G+ IVG E D+ G VS
Sbjct: 89 RFLTKRLDLAEVVDSSKQENVDQVFFGATVEYATQD-GETHIVTIVGIDEVDLDIGHVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ ++GD +++ P G + +IL V +
Sbjct: 148 ISPIARALLKAKVGDTVTLYTPAGPQPIDILDVKY 182
>gi|153806042|ref|ZP_01958710.1| hypothetical protein BACCAC_00293 [Bacteroides caccae ATCC 43185]
gi|149130719|gb|EDM21925.1| hypothetical protein BACCAC_00293 [Bacteroides caccae ATCC 43185]
Length = 176
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 59/151 (39%), Positives = 95/151 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q L E R+ +
Sbjct: 25 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGLLEMRINK 84
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 85 LKTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 144
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+GK++GD+ + P G+ E++ +
Sbjct: 145 IAQGLLGKKIGDVAEITVPQGKIALEVVNIS 175
>gi|170724521|ref|YP_001758547.1| transcription elongation factor GreB [Shewanella woodyi ATCC 51908]
gi|169809868|gb|ACA84452.1| transcription elongation factor GreB [Shewanella woodyi ATCC 51908]
Length = 161
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + +T KG+ + +EL++ +E RP I K + EA A GD SENA+Y K L +
Sbjct: 1 MTAMLITRKGWQALDKELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + ++D S ++ FGA V L SGD Y+IVG E D + G ++
Sbjct: 61 RVRYLVKRVEDLTIVDYSPQQEGKVFFGAWVELEN-ESGDVVQYRIVGKDELDTKLGYIT 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALIGK++ D + V P G K + + ++ +
Sbjct: 120 IDSPMARALIGKQVDDEVVVKTPSGAKEWYVNKIQY 155
>gi|209965876|ref|YP_002298791.1| transcription elongation factor GreB [Rhodospirillum centenum SW]
gi|209959342|gb|ACI99978.1| transcription elongation factor GreB [Rhodospirillum centenum SW]
Length = 180
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 53/153 (34%), Positives = 88/153 (57%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +GF ++Q+ELR + ERP++++ ++ A GD SEN +Y K+ + R+
Sbjct: 24 YMTPEGFRRMQEELRSLLRVERPKVVEVVAWAAGNGDRSENGDYIYGKKRLREIDRRIRF 83
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + AEV+D S D++ FGATV+ + G ++ IVG EAD+ G VS S
Sbjct: 84 LSKRLENAEVVDASRQPRRDQVFFGATVTYA-REDGTERTVTIVGIDEADMDQGKVSWIS 142
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
PIARAL+ GD++++ P G + E++ + +
Sbjct: 143 PIARALLKAREGDLVTLRTPQGPEEIEVVAIAY 175
>gi|107022081|ref|YP_620408.1| transcription elongation factor GreB [Burkholderia cenocepacia AU
1054]
gi|116689025|ref|YP_834648.1| transcription elongation factor GreB [Burkholderia cenocepacia
HI2424]
gi|170732314|ref|YP_001764261.1| transcription elongation factor GreB [Burkholderia cenocepacia
MC0-3]
gi|254246039|ref|ZP_04939360.1| Transcription elongation factor [Burkholderia cenocepacia PC184]
gi|105892270|gb|ABF75435.1| transcription elongation factor GreB [Burkholderia cenocepacia AU
1054]
gi|116647114|gb|ABK07755.1| transcription elongation factor GreB [Burkholderia cenocepacia
HI2424]
gi|124870815|gb|EAY62531.1| Transcription elongation factor [Burkholderia cenocepacia PC184]
gi|169815556|gb|ACA90139.1| transcription elongation factor GreB [Burkholderia cenocepacia
MC0-3]
Length = 187
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S D++ FGATV E G+ IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQENVDQVFFGATVDY-ETPDGEDHTVTIVGIDEVDLDRGCVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARALI ++GD +++ P G + +IL V +
Sbjct: 147 ISPVARALIKAKIGDTVTLMTPAGPQPIDILDVRY 181
>gi|254457427|ref|ZP_05070855.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD
1]
gi|207086219|gb|EDZ63503.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD
1]
Length = 174
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 102/154 (66%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K P++ +G+D + +E ++ + E+P+ + A A GD SENA+Y AAKE + R+
Sbjct: 2 KEPMSIEGYDLLVEEFKFLLEVEKPKTAEEKLVAAAQGDRSENADYHAAKEKLRFIDKRL 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L ++I ++++ID S+ ++++FG+TV ++ ++ +++ Y + G E++ + GL+S+
Sbjct: 62 FYLNSMIQKSQIIDPSSYEHNKVSFGSTVKILNIDTDEEETYTLCGVLESEPEHGLISVH 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA+ALIGKE+ D +N P G+K YEIL++ +
Sbjct: 122 SPIAKALIGKEVEDEFKINLPMGKKEYEILEIEY 155
>gi|262163952|ref|ZP_06031691.1| transcription elongation factor GreA [Vibrio mimicus VM223]
gi|262172290|ref|ZP_06039968.1| transcription elongation factor GreA [Vibrio mimicus MB-451]
gi|261893366|gb|EEY39352.1| transcription elongation factor GreA [Vibrio mimicus MB-451]
gi|262027480|gb|EEY46146.1| transcription elongation factor GreA [Vibrio mimicus VM223]
Length = 157
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 70/158 (44%), Positives = 116/158 (73%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FG+TV++++ N+ ++K YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVTGMDNSGKVIFGSTVTVIDVNTDEEKTYQIVGDDEADIKSGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +++ PGG+K +EI +V ++
Sbjct: 120 SVNSPIARGLIGKFEGDEVAIATPGGDKVFEIDRVEYL 157
>gi|84624754|ref|YP_452126.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188577733|ref|YP_001914662.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|84368694|dbj|BAE69852.1| Transcription elongation factor greB [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|188522185|gb|ACD60130.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 168
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 83/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L
Sbjct: 15 ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+
Sbjct: 75 SKRLEALRVVDTAPTDPNAVFFGAQVDLEDADSGELLRYRIVGPDETDAGRGWISIDSPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + D + P G+ T+ ++ V +
Sbjct: 135 ARALLKKRVDDEFDAHLPAGKHTFVVVSVDY 165
>gi|53715604|ref|YP_101596.1| transcription elongation factor GreA [Bacteroides fragilis YCH46]
gi|60683548|ref|YP_213692.1| putative transcription elongation factor [Bacteroides fragilis NCTC
9343]
gi|253566584|ref|ZP_04844037.1| transcription elongation factor GreA [Bacteroides sp. 3_2_5]
gi|265767453|ref|ZP_06095119.1| transcription elongation factor GreB [Bacteroides sp. 2_1_16]
gi|52218469|dbj|BAD51062.1| transcription elongation factor GreA [Bacteroides fragilis YCH46]
gi|60494982|emb|CAH09800.1| putative transcription elongation factor [Bacteroides fragilis NCTC
9343]
gi|251944756|gb|EES85231.1| transcription elongation factor GreA [Bacteroides sp. 3_2_5]
gi|263252758|gb|EEZ24270.1| transcription elongation factor GreB [Bacteroides sp. 2_1_16]
gi|301165062|emb|CBW24630.1| putative transcription elongation factor [Bacteroides fragilis
638R]
Length = 154
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 58/152 (38%), Positives = 97/152 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ +
Sbjct: 3 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+S+P
Sbjct: 63 LKAVIADAKIIDESKLKTDSVQILNKVELKNTKNGMKMTYTIVSESEANLKEGKISVSTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++GD+ + P G+ + E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEIQVPQGKISLEVVNISF 154
>gi|259503587|ref|ZP_05746489.1| transcription elongation factor GreA [Lactobacillus antri DSM
16041]
gi|259168460|gb|EEW52955.1| transcription elongation factor GreA [Lactobacillus antri DSM
16041]
Length = 158
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T +G K++ EL + + RP +IK I AR+YGDLSEN+EY++AK+ Q +
Sbjct: 1 MAEEKTFPMTLEGKQKLEDELEEYKMKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAM 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+A++EN++ AE+ID + D ++ G +V+ E + + Y IVG+ E+D +G
Sbjct: 61 VESRIAQIENMLQYAEIIDNEDVDKDEVSMGRSVTFKELPDEEPETYSIVGESESDPLNG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+A+ L+G ++G+ + + P G +IL V
Sbjct: 121 KISNESPMAKGLLGHKIGEEVEIEIPNGTMKVKILDV 157
>gi|226944394|ref|YP_002799467.1| transcription elongation factor GreB [Azotobacter vinelandii DJ]
gi|226719321|gb|ACO78492.1| transcription elongation factor protein [Azotobacter vinelandii DJ]
Length = 165
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 92/151 (60%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL RP++ +A+SEA A GD SENAEY K++ + R+ L
Sbjct: 15 ITPEGEARLRAELHELWHVRRPQVTQAVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ +++ FGA V+L +++ G++ Y+IVG E D++ L+SI +P+
Sbjct: 75 TKRLEKLQVVGERPADLNKVYFGAWVTLEDED-GEQVRYRIVGPDELDLKQNLISIDAPL 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+GKEL + V P GEKT+ ++ + +
Sbjct: 134 ARALVGKELDAEVRVPTPTGEKTWYLVAIDY 164
>gi|167622182|ref|YP_001672476.1| transcription elongation factor GreB [Shewanella halifaxensis
HAW-EB4]
gi|167352204|gb|ABZ74817.1| transcription elongation factor GreB [Shewanella halifaxensis
HAW-EB4]
Length = 159
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ VT +GF+K+Q+EL + +E RP I K +S A + GD SENA+Y K+ +
Sbjct: 1 MRTAIVTREGFEKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKKKLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +V+D S ++ FGA V + + G+K ++IVG E + +S
Sbjct: 61 RVRYLRKTLENVQVVDYSPAQEGKVFFGAWVEIEN-DDGNKLQFKIVGYDEIFGRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+AR L+ KE+ D + P GE+ + I ++ +
Sbjct: 120 IDSPMARGLLKKEVDDEAVIKTPTGEQVWYINRISY 155
>gi|332798250|ref|YP_004459749.1| transcription elongation factor GreA [Tepidanaerobacter sp. Re1]
gi|332695985|gb|AEE90442.1| transcription elongation factor GreA [Tepidanaerobacter sp. Re1]
Length = 158
Score = 150 bits (380), Expect = 5e-35, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M K + +T +G K+++EL + + +R I I +A +GD+SEN+EY AK Q
Sbjct: 1 MAKKEVVLTQEGLKKMEEELEYLKSVKRREIAARIKQAIDFGDISENSEYDEAKNEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+A LE + A++ID +S D ++ G+ V L + ++GD Y IVG EA+
Sbjct: 61 EGRIALLEEKLRNAKLIDEVDISTDVVSVGSKVKLKDLDTGDIFEYMIVGSAEANPIENK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ ALIG++ G I+ V+ P G YEI+ +
Sbjct: 121 ISNESPVGNALIGEKKGSIVEVSVPAGIIKYEIMDI 156
>gi|209519140|ref|ZP_03267945.1| transcription elongation factor GreB [Burkholderia sp. H160]
gi|209500440|gb|EEA00491.1| transcription elongation factor GreB [Burkholderia sp. H160]
Length = 189
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL ERP ++K +S A + GD SEN +Y K + R+
Sbjct: 29 KNYMTPAGHRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S D++ FGATV G++ IVG E D+ G VS
Sbjct: 89 RFLTKRLDLAEVVDSSRQENVDQVFFGATVDYA-TEDGEEHKVTIVGIDEVDLDIGHVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ ++GD +++ P G + +IL V +
Sbjct: 148 ISPIARALLKAKVGDTVTLFTPAGPQPIDILDVKY 182
>gi|157963827|ref|YP_001503861.1| transcription elongation factor GreB [Shewanella pealeana ATCC
700345]
gi|157848827|gb|ABV89326.1| transcription elongation factor GreB [Shewanella pealeana ATCC
700345]
Length = 159
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ VT +GF+K+Q+EL + +E RP I K +S A + GD SENA+Y K +
Sbjct: 1 MRTAIVTREGFEKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKRKLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +V+D S ++ FGA V + + G+K ++IVG E + +S
Sbjct: 61 RVRYLRKTLENVQVVDYSPAQEGKVFFGAWVEIEN-DDGNKLAFKIVGYDEIFGRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+AR L+ KE+ D + P GE+ + I ++ +
Sbjct: 120 IDSPMARGLLKKEVDDEAVIKTPTGEQVWYINRISY 155
>gi|158319500|ref|YP_001512007.1| transcription elongation factor GreA [Alkaliphilus oremlandii
OhILAs]
gi|166987608|sp|A8MLU4|GREA_ALKOO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|158139699|gb|ABW18011.1| transcription elongation factor GreA [Alkaliphilus oremlandii
OhILAs]
Length = 159
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M D+ + +T++G K++ EL + R I + I +A A+GD+SEN+EY AK Q
Sbjct: 2 MADREVVLTAQGLKKLEDELELLKTVRRKEIAERIKQAIAFGDISENSEYDEAKNEQAQV 61
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ +LE ++ +A +ID ++ D ++ G+ V + + + Y IVG EAD
Sbjct: 62 EDRINKLETMLRKAVIIDEEDINTDIVSIGSIVQVNDLEFDEIVEYTIVGSTEADPYELK 121
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ RAL+G ++GD++ V P G YEIL++
Sbjct: 122 ISNESPVGRALLGTKVGDVVEVQIPDGVTKYEILKIT 158
>gi|289663189|ref|ZP_06484770.1| transcription elongation factor GreB [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289669412|ref|ZP_06490487.1| transcription elongation factor GreB [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 167
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 82/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L
Sbjct: 15 ITPEGHARLKAELEDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+
Sbjct: 75 SKRLEALRVVDTAPTDPNAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + D P G+ T+ ++ V +
Sbjct: 135 ARALLKKRVDDEFDAQLPAGKHTFVVMSVHY 165
>gi|170288918|ref|YP_001739156.1| transcription elongation factor GreA [Thermotoga sp. RQ2]
gi|238688841|sp|B1LAX5|GREA_THESQ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|170176421|gb|ACB09473.1| transcription elongation factor GreA [Thermotoga sp. RQ2]
Length = 156
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 98/154 (63%), Gaps = 1/154 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+ +T +G++K+++EL +++ I + I EAR GDLSEN+EY+AAK Q
Sbjct: 1 MKKVRLTREGYEKLKKELEDLKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E I++ AE+I+ S D I G V + ++G++ ++IV QEAD + +S
Sbjct: 61 RIMEIEQILSNAEIIEDSE-ENDEITLGKWVVIRNLDTGEEHKFRIVTPQEADFFAQKLS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ ++L+G+++GD++ V AP G + Y+++ V
Sbjct: 120 SDSPLGKSLLGRKVGDVVKVKAPSGVQRYQVIAV 153
>gi|260886921|ref|ZP_05898184.1| transcription elongation factor GreA [Selenomonas sputigena ATCC
35185]
gi|330839288|ref|YP_004413868.1| transcription elongation factor GreA [Selenomonas sputigena ATCC
35185]
gi|260863350|gb|EEX77850.1| transcription elongation factor GreA [Selenomonas sputigena ATCC
35185]
gi|329747052|gb|AEC00409.1| transcription elongation factor GreA [Selenomonas sputigena ATCC
35185]
Length = 156
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T +G+ K+Q++L + + R + + + A A GDLSEN+EY AK Q
Sbjct: 1 MAEKRVMLTEEGYKKLQEKLDYLKSVRRIEVSERLKAAIALGDLSENSEYDDAKNEQAFL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG + +LE I +++I S D + G+TV + + +++ Y +VG EAD
Sbjct: 61 EGEILDLEAKIRNSDIIQGGA-SSDTVQMGSTVVVKDVEFDEQETYTLVGSAEADPTEFK 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ A+IGK++GD + V+AP G YE++++
Sbjct: 120 ISNESPVGAAIIGKKVGDRVDVHAPAGIIQYEVVEIK 156
>gi|289673217|ref|ZP_06494107.1| transcription elongation factor GreB [Pseudomonas syringae pv.
syringae FF5]
Length = 157
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T G +++EL + +E RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKI-ITRDGHQALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ +
Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+GD + VN P GEK + + + +
Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIDY 155
>gi|319900857|ref|YP_004160585.1| transcription elongation factor GreA [Bacteroides helcogenes P
36-108]
gi|319415888|gb|ADV42999.1| transcription elongation factor GreA [Bacteroides helcogenes P
36-108]
Length = 151
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 58/151 (38%), Positives = 94/151 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ L
Sbjct: 1 MSEEGYKKLMAELKQLETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINNL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A++ID S +S D + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 61 KLTIADAKIIDESKLSTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GD+ + P G E++ + +
Sbjct: 121 AQGLLGKKVGDVAEIKVPQGMIHLEVMNISF 151
>gi|300907452|ref|ZP_07125097.1| transcription elongation factor GreB [Escherichia coli MS 84-1]
gi|300400790|gb|EFJ84328.1| transcription elongation factor GreB [Escherichia coli MS 84-1]
Length = 162
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 88/150 (58%), Gaps = 2/150 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFDRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 133 DSPMARALLKKEVGDLAVVNTPAGEASWYV 162
>gi|145300940|ref|YP_001143781.1| transcription elongation factor GreB [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853712|gb|ABO92033.1| transcription elongation factor GreB [Aeromonas salmonicida subsp.
salmonicida A449]
Length = 157
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K+++EL + +EERP + ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTKLITREGYNKLKEELDFLWREERPETTRKVAWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + ++D + ++ FGA V + + GD K ++IVG E + +S
Sbjct: 61 RVRYLRKCLEELGIVDYAPAQEGKVFFGAWVEVENEE-GDTKRFRIVGYDEIFGRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE+GD V P G+ + I + +
Sbjct: 120 IDSPMARALLKKEVGDEAIVPTPVGDACWYINDISY 155
>gi|253572564|ref|ZP_04849966.1| transcription elongation factor greA [Bacteroides sp. 1_1_6]
gi|298387790|ref|ZP_06997340.1| transcription elongation factor GreA [Bacteroides sp. 1_1_14]
gi|251837979|gb|EES66068.1| transcription elongation factor greA [Bacteroides sp. 1_1_6]
gi|298259395|gb|EFI02269.1| transcription elongation factor GreA [Bacteroides sp. 1_1_14]
Length = 173
Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats.
Identities = 59/151 (39%), Positives = 95/151 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +
Sbjct: 22 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 81
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 82 LKTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 141
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+GK++GDI + P G+ E++ +
Sbjct: 142 IAQGLLGKKVGDIAEITVPQGKIALEVVNIS 172
>gi|153212566|ref|ZP_01948313.1| transcription elongation factor GreB [Vibrio cholerae 1587]
gi|124116437|gb|EAY35257.1| transcription elongation factor GreB [Vibrio cholerae 1587]
Length = 160
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G++K++QEL + +E+RP I + +S A + GD SENA+Y K L +
Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L ++ +++D S ++ FGA V + +G+ K ++IVG +E +
Sbjct: 61 RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGEVKKFRIVGPEEIYGDAKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ + V+ P G K + I + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPMGMKEWFINSIEY 156
>gi|329960362|ref|ZP_08298787.1| transcription elongation factor GreA [Bacteroides fluxus YIT 12057]
gi|328532800|gb|EGF59582.1| transcription elongation factor GreA [Bacteroides fluxus YIT 12057]
Length = 154
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 57/152 (37%), Positives = 93/152 (61%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++
Sbjct: 3 YMSEEGYKKLMAELKHLETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINN 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 63 LKLTIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMVYTIVSESEANLKEGKISVNTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++GD+ + P G E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGVINLEVVNISF 154
>gi|161525566|ref|YP_001580578.1| transcription elongation factor GreB [Burkholderia multivorans ATCC
17616]
gi|189349706|ref|YP_001945334.1| transcription elongation factor GreB [Burkholderia multivorans ATCC
17616]
gi|221201206|ref|ZP_03574246.1| transcription elongation factor GreB [Burkholderia multivorans
CGD2M]
gi|221206340|ref|ZP_03579353.1| transcription elongation factor GreB [Burkholderia multivorans
CGD2]
gi|221213620|ref|ZP_03586594.1| transcription elongation factor GreB [Burkholderia multivorans
CGD1]
gi|160342995|gb|ABX16081.1| transcription elongation factor GreB [Burkholderia multivorans ATCC
17616]
gi|189333728|dbj|BAG42798.1| transcription elongation factor [Burkholderia multivorans ATCC
17616]
gi|221166409|gb|EED98881.1| transcription elongation factor GreB [Burkholderia multivorans
CGD1]
gi|221173649|gb|EEE06083.1| transcription elongation factor GreB [Burkholderia multivorans
CGD2]
gi|221179056|gb|EEE11463.1| transcription elongation factor GreB [Burkholderia multivorans
CGD2M]
Length = 187
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLKDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S D++ FGATV + G++ IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEEHTITIVGIDEVDLDRGCVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARALI +GD +++ P G + ++L V +
Sbjct: 147 ISPVARALIKARIGDTVTLMTPAGPQPIDVLDVRY 181
>gi|312882877|ref|ZP_07742609.1| transcription elongation factor GreB [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309369396|gb|EFP96916.1| transcription elongation factor GreB [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 162
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 83/157 (52%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K++ E + E RP + K ++ A GD SENA+Y K L +
Sbjct: 1 MKTKLITREGYNKLKAEHDYLWHERRPEVTKIVTWAAGLGDRSENADYTFNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + ++D S ++ FGA V + ++GD K ++IVG +E +
Sbjct: 61 RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIEN-DAGDTKKFRIVGPEEIYGDAKEYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D V+ P GEK + I + +
Sbjct: 120 SIDSPMARALLKKEVDDEFVVHTPEGEKEWFINAISY 156
>gi|255038560|ref|YP_003089181.1| transcription elongation factor GreA [Dyadobacter fermentans DSM
18053]
gi|254951316|gb|ACT96016.1| transcription elongation factor GreA [Dyadobacter fermentans DSM
18053]
Length = 160
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 98/156 (62%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T +G +K++ EL + + R I + I+EAR GDLSENAEY AAK+ Q ++E
Sbjct: 1 MAKISYYTEEGLNKLRNELNEMKTKGRTEIARQIAEARDKGDLSENAEYDAAKDAQGMHE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE I++ A VID S+M +++ + V + + +G + Y +V ++EAD+++G +
Sbjct: 61 MKIAKLEEILSNARVIDESSMDTSQVSVLSKVKIKNRKNGMEVTYTLVSEEEADLKAGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SPI + L+GK++G+ + P G +E+L +
Sbjct: 121 SVGSPIGKGLLGKKVGETTEIKVPAGMMEFEVLDIS 156
>gi|228476529|ref|ZP_04061219.1| transcription elongation factor GreA [Streptococcus salivarius
SK126]
gi|228251950|gb|EEK10996.1| transcription elongation factor GreA [Streptococcus salivarius
SK126]
Length = 160
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T ++++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYVMTQAEKEQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG++ LE I AE++D ++ D +A G TV + E + DK Y IVG AD+ SG
Sbjct: 61 EGQIQILETKIRYAEIVDSDAVANDEVAIGKTVVVQEVGTNDKDTYHIVGAAGADIFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK++GD +++ +P G + EIL V
Sbjct: 121 ISNESPIAQALIGKKVGDKVAIESPAGSYSVEILSVE 157
>gi|82702992|ref|YP_412558.1| transcription elongation factor GreB [Nitrosospira multiformis ATCC
25196]
gi|82411057|gb|ABB75166.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC
25196]
Length = 213
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 86/156 (55%), Gaps = 3/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G ++ E W ERP++ +S A A GD SENA+Y K+ + R+
Sbjct: 31 KNYITPEGHKRLMDEFLWLMNRERPQVTATVSWAAANGDRSENADYIYGKKRLREIDRRI 90
Query: 64 AELENIITRAEVIDIS--TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
L + AE+ID S RI FGATV+ + + G++K IVG E D G +S
Sbjct: 91 RFLTRRLDMAEIIDPSMPREDESRIFFGATVTYINEK-GEEKIVSIVGVNEIDTTRGYIS 149
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+AR L+ GD+++++APGG + EIL+V +
Sbjct: 150 WVSPLARTLLKAREGDVVTLHAPGGTEELEILEVRY 185
>gi|319779409|ref|YP_004130322.1| Transcription elongation factor GreB [Taylorella equigenitalis
MCE9]
gi|317109433|gb|ADU92179.1| Transcription elongation factor GreB [Taylorella equigenitalis
MCE9]
Length = 182
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G++ +++EL ERP +++ +S A + GD SEN +Y K+ + R+
Sbjct: 27 KNYMTVTGYNSLRKELSDLVTVERPEVVQVVSWAASNGDRSENGDYIYGKKRLREIDRRI 86
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEVID S DR+ FGATV+ + N+ D+ IVG EAD +G +S
Sbjct: 87 RFLTKRLEIAEVIDPSQQPNKDRVYFGATVTYLNPNN-DEVTVTIVGIDEADPLNGKISW 145
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A+ALI E G I+++ P G++ E+L++++
Sbjct: 146 ISPVAKALIKSEEGQIVTLKTPNGKQEIEVLEIVY 180
>gi|241663543|ref|YP_002981903.1| transcription elongation factor GreB [Ralstonia pickettii 12D]
gi|240865570|gb|ACS63231.1| transcription elongation factor GreB [Ralstonia pickettii 12D]
Length = 187
Score = 150 bits (379), Expect = 7e-35, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+++++ EL ERP ++ +S A + GD SEN +Y K+ + R+
Sbjct: 29 KNYITPAGYERLRSELMHLIDTERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I +AEV+D S D+I FGATV+ + G++ IVG E D+ G VS
Sbjct: 89 RFLTRRIEKAEVVDASLQGDNDQIFFGATVTYANQR-GEETTITIVGTDEVDLDIGHVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALI GD + + P G + +IL+V +
Sbjct: 148 ISPIARALIKAREGDTVPLRTPTGVEQIDILEVKY 182
>gi|145628952|ref|ZP_01784752.1| transcription elongation factor GreB [Haemophilus influenzae
22.1-21]
gi|144979422|gb|EDJ89108.1| transcription elongation factor GreB [Haemophilus influenzae
22.1-21]
Length = 156
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 84/154 (54%), Gaps = 1/154 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G+ + QEL++ +EERP++ +A+S+A A GD SENAEY K +
Sbjct: 1 MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D + ++ FGA V L + G+ K Y+IVG E +
Sbjct: 61 RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEE-GETKQYRIVGCDEFAPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
SI SP+ARALIGK L D + V P G T I +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINK 153
>gi|46198565|ref|YP_004232.1| transcription elongation factor greA [Thermus thermophilus HB27]
gi|55980591|ref|YP_143888.1| transcription elongation factor GreA [Thermus thermophilus HB8]
gi|18034649|gb|AAL57613.1|AF456236_1 transcription cleavage factor GreA [Thermus thermophilus]
gi|46196187|gb|AAS80605.1| transcription elongation factor greA [Thermus thermophilus HB27]
gi|55772004|dbj|BAD70445.1| transcription elongation factor GreA [Thermus thermophilus HB8]
Length = 155
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 93/156 (59%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G+ ++Q+EL + +R I +A GDL ENA Y A+ NE
Sbjct: 1 MKKPVYLTPEGYRRLQEELNHLKTVKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE++++RA +++ S D++A G V L E +G++ + IVG EAD+ SG +
Sbjct: 61 ARIAQLEDLLSRAVIVE--NGSFDQVALGCQVEL-ETETGERLSLAIVGSHEADIFSGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +AL+GK++GD++ + G + Y IL++
Sbjct: 118 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEIK 153
>gi|303230991|ref|ZP_07317734.1| transcription elongation factor GreA [Veillonella atypica
ACS-049-V-Sch6]
gi|302514373|gb|EFL56372.1| transcription elongation factor GreA [Veillonella atypica
ACS-049-V-Sch6]
Length = 157
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M D + +T++G K++ EL + + R + + I A YGD+SEN+EY AK Q
Sbjct: 1 MADVKETLLTAEGLKKLEDELAYYKSVRRIEVSQRIKTAIEYGDISENSEYDDAKNEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EG ++ELEN I A++ID ST GD ++ G+ V++++ D+ Y IVG EAD +
Sbjct: 61 IEGYISELENKINTAKIIDEST-KGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNN 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++GK GD + V+ P G T+++L +
Sbjct: 120 RISNESPVGKAILGKRKGDEVEVSTPDGPVTFKVLAIQ 157
>gi|307243775|ref|ZP_07525909.1| transcription elongation factor GreA [Peptostreptococcus stomatis
DSM 17678]
gi|306492851|gb|EFM64870.1| transcription elongation factor GreA [Peptostreptococcus stomatis
DSM 17678]
Length = 161
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 90/155 (58%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+I +T +G+DK++ EL + R + + + A ++GDLSENAEY AK+ Q E
Sbjct: 6 SKEIILTQEGYDKLESELELLKTTRRKEVAERLKVAISFGDLSENAEYDEAKKEQAALEE 65
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LEN+ A +ID S ++ D I G+ V + +++ ++ Y IVG EAD G +S
Sbjct: 66 RILKLENMTRVAVIIDESNVNLDIITVGSVVKIYDEDFDEELEYTIVGSAEADPYDGKIS 125
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+G+ GD++ V P G +++ +
Sbjct: 126 NESPVGKALLGRAKGDVVEVTVPDGIAKLKVVDIK 160
>gi|171057421|ref|YP_001789770.1| transcription elongation factor GreB [Leptothrix cholodnii SP-6]
gi|170774866|gb|ACB33005.1| transcription elongation factor GreB [Leptothrix cholodnii SP-6]
Length = 189
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G+ ++ EL ERPR+++A+S A GD SEN +Y K+ + R+
Sbjct: 32 YMTPQGWSSLRAELMTLLDVERPRVVEAVSWAAKNGDRSENGDYIYGKKRLREIDRRIRF 91
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + AEV D S G D++ FGATV+ GD++ I G E+D G VS S
Sbjct: 92 LTKRLDIAEVADPSLHHGSDQVFFGATVTYANSR-GDERTVTIKGIDESDSLKGEVSWVS 150
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
PIARALI GD + + PGG + E+L+V +
Sbjct: 151 PIARALIKAREGDEVQLMTPGGLERLEVLEVSY 183
>gi|254850868|ref|ZP_05240218.1| transcription elongation factor GreA [Vibrio cholerae MO10]
gi|255744149|ref|ZP_05418102.1| transcription elongation factor GreA [Vibrio cholera CIRS 101]
gi|262155723|ref|ZP_06028847.1| transcription elongation factor GreA [Vibrio cholerae INDRE 91/1]
gi|262169934|ref|ZP_06037624.1| transcription elongation factor GreA [Vibrio cholerae RC27]
gi|25453014|sp|Q9KU89|GREA_VIBCH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254846573|gb|EET24987.1| transcription elongation factor GreA [Vibrio cholerae MO10]
gi|255738089|gb|EET93481.1| transcription elongation factor GreA [Vibrio cholera CIRS 101]
gi|262021668|gb|EEY40379.1| transcription elongation factor GreA [Vibrio cholerae RC27]
gi|262030434|gb|EEY49074.1| transcription elongation factor GreA [Vibrio cholerae INDRE 91/1]
gi|327483437|gb|AEA77844.1| Transcription elongation factor GreA [Vibrio cholerae LMA3894-4]
Length = 157
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 116/158 (73%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FGATV++++ NS ++K YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +S+ PGG K +EI +V ++
Sbjct: 120 SVNSPIARGLIGKFEGDEVSIATPGGNKVFEIDRVEYL 157
>gi|221065450|ref|ZP_03541555.1| transcription elongation factor GreB [Comamonas testosteroni KF-1]
gi|220710473|gb|EED65841.1| transcription elongation factor GreB [Comamonas testosteroni KF-1]
Length = 188
Score = 149 bits (378), Expect = 8e-35, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+ +I+ EL ERP+I++ + A + GD SEN +Y K+ + R+
Sbjct: 28 KNYITPQGYQRIKDELLDLIDNERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRI 87
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D + +G D++ FGATVS V+ + G ++ I+G EAD VS
Sbjct: 88 RFLTKRLEIAEVVDPAVHAGSDQVFFGATVSYVD-DEGVERTITIMGIDEADSAQNQVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+P++RAL+ +GD +++ P G + EIL V +
Sbjct: 147 IAPVSRALLKARVGDEVALPTPAGVRMLEILDVSY 181
>gi|299066253|emb|CBJ37437.1| Transcription elongation factor (Transcript cleavage factor)
[Ralstonia solanacearum CMR15]
Length = 187
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL ERP ++ +S A + GD SEN +Y K+ + R+
Sbjct: 29 KNYITPAGYTRLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I RAEV+D S D+I FGATV+ + GD+ IVG E D+ G VS
Sbjct: 89 RFLTRRIERAEVVDASLQGDNDQIFFGATVTYANQG-GDETTITIVGMDEVDLDKGQVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALI GD +++ P G ++ +IL V +
Sbjct: 148 ISPIARALIKAREGDTVALRTPTGVESIDILAVTY 182
>gi|157373311|ref|YP_001471911.1| transcription elongation factor GreB [Shewanella sediminis HAW-EB3]
gi|157315685|gb|ABV34783.1| transcription elongation factor GreB [Shewanella sediminis HAW-EB3]
Length = 163
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + +T KG+ + +EL++ +E RP I K + EA A GD SENA+Y K L +
Sbjct: 1 MKAMLITRKGWQALDKELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +++D S ++ FGA + L +G+ Y+IVG E D + G ++
Sbjct: 61 RVRYLVKRVEELQIVDYSPQQEGKVFFGAWIELEN-EAGEIVQYRIVGKDELDTKLGYIT 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALIGK++ D + V P G K + I ++ +
Sbjct: 120 IDSPMARALIGKQVDDEVVVPTPLGPKEWYINKIQY 155
>gi|317049903|ref|YP_004117551.1| GreA/GreB family elongation factor [Pantoea sp. At-9b]
gi|316951520|gb|ADU70995.1| GreA/GreB family elongation factor [Pantoea sp. At-9b]
Length = 167
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K++ E E+RP I K +S A + GD SENA+Y K L +
Sbjct: 1 MKTQLITREGYNKLRAEHDHLWNEKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + +++D + ++ FGA V + G+ K ++IVG E + +
Sbjct: 61 RVRYLRKCLAELKIVDYAPQQEGKVFFGAWVEVEN-EQGEVKRFRIVGPDEIYGEVKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SP+ARALI KE+ D ++VN P G+K + + ++ ++
Sbjct: 120 SIDSPMARALIKKEVDDEVTVNTPEGQKLWFVNRIEYV 157
>gi|76810661|ref|YP_334421.1| transcription elongation factor GreB [Burkholderia pseudomallei
1710b]
gi|134280310|ref|ZP_01767021.1| transcription elongation factor GreB [Burkholderia pseudomallei
305]
gi|167739719|ref|ZP_02412493.1| transcription elongation factor GreB [Burkholderia pseudomallei 14]
gi|167825326|ref|ZP_02456797.1| transcription elongation factor GreB [Burkholderia pseudomallei 9]
gi|167903804|ref|ZP_02491009.1| transcription elongation factor GreB [Burkholderia pseudomallei
NCTC 13177]
gi|217421177|ref|ZP_03452682.1| transcription elongation factor GreB [Burkholderia pseudomallei
576]
gi|226193760|ref|ZP_03789362.1| transcription elongation factor GreB [Burkholderia pseudomallei
Pakistan 9]
gi|237813377|ref|YP_002897828.1| transcription elongation factor GreB [Burkholderia pseudomallei
MSHR346]
gi|254258154|ref|ZP_04949208.1| transcription elongation factor GreB [Burkholderia pseudomallei
1710a]
gi|76580114|gb|ABA49589.1| transcription elongation factor GreB [Burkholderia pseudomallei
1710b]
gi|134248317|gb|EBA48400.1| transcription elongation factor GreB [Burkholderia pseudomallei
305]
gi|217396589|gb|EEC36606.1| transcription elongation factor GreB [Burkholderia pseudomallei
576]
gi|225934065|gb|EEH30050.1| transcription elongation factor GreB [Burkholderia pseudomallei
Pakistan 9]
gi|237504521|gb|ACQ96839.1| transcription elongation factor GreB [Burkholderia pseudomallei
MSHR346]
gi|254216843|gb|EET06227.1| transcription elongation factor GreB [Burkholderia pseudomallei
1710a]
Length = 187
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLHLIDEARPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S + D++ FGATV ++ G++ IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GNEHTVTIVGVDEVDLDRGHVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ +GD +++ P G + ++L V +
Sbjct: 147 ISPVARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181
>gi|66045305|ref|YP_235146.1| transcription elongation factor GreB [Pseudomonas syringae pv.
syringae B728a]
gi|63256012|gb|AAY37108.1| Prokaryotic transcription elongation factor GreB [Pseudomonas
syringae pv. syringae B728a]
gi|330899247|gb|EGH30666.1| transcription elongation factor GreB [Pseudomonas syringae pv.
japonica str. M301072PT]
gi|330944671|gb|EGH46613.1| transcription elongation factor GreB [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330973780|gb|EGH73846.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aceris str. M302273PT]
gi|330977558|gb|EGH77502.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 157
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKI-ITRDGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ +
Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+GD + VN P GEK + + + +
Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIDY 155
>gi|330958996|gb|EGH59256.1| transcription elongation factor GreB [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 157
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKI-ITRDGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V+ S R+ GA V + +GD K ++IVG E ++ +
Sbjct: 60 RRVRYLRKRLEDMRVVSYSPEQEGRVFLGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+GD + VN P GEK + + +++
Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIVY 155
>gi|167586480|ref|ZP_02378868.1| transcription elongation factor GreB [Burkholderia ubonensis Bu]
Length = 187
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLNLIDAERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S + D++ FGATV + G++ IVG E D+ G VS
Sbjct: 88 RFLTKRLDIAEVVDASRQENTDQVFFGATVDYATPD-GEEHTITIVGIDEVDLDHGHVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ ++GD +++ P G + ++L V +
Sbjct: 147 ISPVARALLKAKIGDTVTLMTPAGPQPIDVLDVHY 181
>gi|126726046|ref|ZP_01741888.1| transcription elongation factor GreA [Rhodobacterales bacterium
HTCC2150]
gi|126705250|gb|EBA04341.1| transcription elongation factor GreA [Rhodobacterales bacterium
HTCC2150]
Length = 156
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 78/156 (50%), Positives = 116/156 (74%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KIP+T GF ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EG
Sbjct: 1 MEKIPLTRGGFTALEAELKNLKTVERPAIIAAIAEAREHGDLSENAEYHSAREKHSFIEG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE II+ AEVID M+G I FGATV++V++++ ++K YQIVG+ EA+++ G ++
Sbjct: 61 RVKELEAIISLAEVIDPVGMTG-AIKFGATVTIVDEDTDEEKTYQIVGEHEANIEQGKLN 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP++R LIGKE GD + V PGG ++YEIL++ +
Sbjct: 120 LKSPLSRGLIGKEEGDSVEVKTPGGTRSYEILKIDF 155
>gi|152981655|ref|YP_001353015.1| transcription elongation factor GreB [Janthinobacterium sp.
Marseille]
gi|151281732|gb|ABR90142.1| transcription elongation factor GreB [Janthinobacterium sp.
Marseille]
Length = 183
Score = 149 bits (378), Expect = 9e-35, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 76/154 (49%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G +++ EL ERP +++ +S A + GD SEN +Y K +GR+
Sbjct: 26 KNYMTPQGHLRMKTELLKLIDVERPEVVQIVSWAASNGDRSENGDYIYGKRRLRQIDGRI 85
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L + AEV+D S G F E +GD+ I+G E D +G +S
Sbjct: 86 RFLTKRLDLAEVVDPSIHHGSDQIFFGATVRYETQAGDEHTVTILGIDELDPLNGKISWI 145
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL GD + + PGG + IL+V +
Sbjct: 146 SPVARALTKAREGDTVVLKTPGGLEELLILEVTY 179
>gi|24376104|ref|NP_720147.1| transcription elongation factor GreB [Shewanella oneidensis MR-1]
gi|24351133|gb|AAN57591.1|AE015894_11 transcription elongation factor GreB [Shewanella oneidensis MR-1]
Length = 167
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L +
Sbjct: 1 MKAHLITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +++D S +I FGA L ++G++ Y+IVG E D + G ++
Sbjct: 61 RVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELEN-DAGERVRYRIVGKDELDTKLGYIT 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALIGK++ D + V P G K + I ++ +
Sbjct: 120 IDSPMARALIGKQVDDEVVVQTPSGPKAWYINEIRY 155
>gi|156972942|ref|YP_001443849.1| transcription elongation factor [Vibrio harveyi ATCC BAA-1116]
gi|156524536|gb|ABU69622.1| hypothetical protein VIBHAR_00620 [Vibrio harveyi ATCC BAA-1116]
Length = 161
Score = 149 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+++++ EL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTNLITREGYNRLKTELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + + +V+D S ++ FGA V + +GD KN++IVG E G +
Sbjct: 61 RVRYLRKRLEQVKVVDYSPKQEGKVFFGAWVEIEN-EAGDVKNFRIVGPDEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D +V P G K + I + +
Sbjct: 120 SIDSPMARALLKKEVDDEFAVRTPEGYKEWFINSIRY 156
>gi|154499802|ref|ZP_02037840.1| hypothetical protein BACCAP_03459 [Bacteroides capillosus ATCC
29799]
gi|150271400|gb|EDM98657.1| hypothetical protein BACCAP_03459 [Bacteroides capillosus ATCC
29799]
Length = 157
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 89/156 (57%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + ++ + + +++ EL + + + I EAR++GDLSEN+EY AK Q
Sbjct: 1 MAKEFKLSPERWKELKDELVYLKTVREKEVADQIKEARSFGDLSENSEYDEAKNEQGKLY 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+ENI+ VI+ G + G+ + +++ ++ +Y++VG QEAD +G +
Sbjct: 61 SRIAEVENILENCVVIEEEIHDGKTVRLGSKLKVLDVEFNEELDYEVVGSQEADPMNGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP RAL+GK +G+ + V AP G Y++L +
Sbjct: 121 SEDSPFGRALLGKSVGEDVVVEAPAGALHYKVLSIS 156
>gi|187929352|ref|YP_001899839.1| transcription elongation factor GreB [Ralstonia pickettii 12J]
gi|309781794|ref|ZP_07676527.1| transcription elongation factor GreB [Ralstonia sp. 5_7_47FAA]
gi|187726242|gb|ACD27407.1| transcription elongation factor GreB [Ralstonia pickettii 12J]
gi|308919435|gb|EFP65099.1| transcription elongation factor GreB [Ralstonia sp. 5_7_47FAA]
Length = 187
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+++++ EL ERP ++ +S A + GD SEN +Y K+ + R+
Sbjct: 29 KNYITPAGYERLRTELMHLIDTERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I +AEV+D S D+I FGATV+ + G++K IVG E D+ G VS
Sbjct: 89 RFLTRRIEKAEVVDASLQGDNDQIFFGATVTYANQR-GEEKTITIVGMDEVDLDIGHVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALI +GD + + P G + +IL+V +
Sbjct: 148 ISPIARALIKARVGDTVPLRTPTGVEQIDILEVKY 182
>gi|124006704|ref|ZP_01691535.1| transcription elongation factor GreA [Microscilla marina ATCC
23134]
gi|123987612|gb|EAY27312.1| transcription elongation factor GreA [Microscilla marina ATCC
23134]
Length = 157
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 95/156 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T +G K++ EL+ + + R + I+EAR GDLSENAEY AAK+ Q L E
Sbjct: 1 MAKVSYYTKEGLKKLKDELQHLKTKGRADMAYQIAEARDKGDLSENAEYDAAKDAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE+ + A +ID S + +++ +TV + + Y +V ++EA+++ G +
Sbjct: 61 LKIAKLEDTVANARIIDESNIDTSKVSILSTVKIKHQKLKKVLTYTLVSEEEANLKEGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SP+ + L+GK++G++ V+ P G+ +EIL++
Sbjct: 121 SVQSPVGKGLLGKKVGEVAEVHTPAGKTDFEILEIT 156
>gi|88607617|ref|YP_505838.1| transcription elongation factor GreA [Anaplasma phagocytophilum HZ]
gi|88598680|gb|ABD44150.1| transcription elongation factor GreA [Anaplasma phagocytophilum HZ]
Length = 166
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/160 (45%), Positives = 108/160 (67%), Gaps = 6/160 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P+T G+ K++ EL + ERP+IIK+IS+AR GDLSENAEY AA+E Q L E ++
Sbjct: 8 RFPITKGGYQKLESELEALKS-ERPKIIKSISDARELGDLSENAEYHAARERQGLVESKI 66
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSL----VEKNSGDKKNYQIVGDQEADVQSGL 119
ELE+ +RAEVI++S +SGD + FGATV++ + ++ + YQIVG+ EADV +
Sbjct: 67 MELESKKSRAEVIEVSELSGDTVMFGATVTVSVYDEQSDTTSEVKYQIVGEYEADVSKNM 126
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
+SI SP+ AL+GK GD + + P G+ Y+I +V +I
Sbjct: 127 ISIKSPLVLALLGKREGDSVELKTPRGDYKVYQINKVEFI 166
>gi|313115332|ref|ZP_07800807.1| transcription elongation factor GreA [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622363|gb|EFQ05843.1| transcription elongation factor GreA [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 161
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +++ G +Q+EL + + R + + I EAR++GDLSEN+EY AK Q L E
Sbjct: 1 MAQEIKMSAAGLKAMQEELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE +I A +ID S +S D ++ G V+++ + + Y IVG EAD +G +
Sbjct: 61 NRITELEQMIKNAVIIDESELSVDNVSVGTHVTILMTGEDENEEYDIVGRTEADPLNGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
S SP+ AL+GK +GD V P G Y +L +
Sbjct: 121 SDESPVGHALLGKAVGDKAEVLLPTGHTVEYTVLNITH 158
>gi|163748836|ref|ZP_02156088.1| transcription elongation factor GreB [Shewanella benthica KT99]
gi|161331610|gb|EDQ02415.1| transcription elongation factor GreB [Shewanella benthica KT99]
Length = 161
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + +T KG+ + +EL++ +E RP+I K + EA A GD SENA+Y K L +G
Sbjct: 1 MKALLITRKGWQALDKELKYLWKEYRPQITKKVQEAAAQGDRSENADYTYNKRLLRQIDG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +++D S ++ FGA + L +GD Y+IVG E D + G ++
Sbjct: 61 RVRYLVKRVEELKIVDYSPQQEGKVFFGAWIELEN-EAGDVVQYRIVGKDELDTKLGYIT 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALIGK++ D I V P G K + + ++ +
Sbjct: 120 IDSPMARALIGKQVDDDIVVQTPSGSKEWYVNKIQY 155
>gi|312870533|ref|ZP_07730651.1| transcription elongation factor GreA [Lactobacillus oris
PB013-T2-3]
gi|311093930|gb|EFQ52256.1| transcription elongation factor GreA [Lactobacillus oris
PB013-T2-3]
Length = 158
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 99/157 (63%), Gaps = 2/157 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T +G K++ EL + + RP +IK I AR+YGDLSEN+EY++AK+ Q +
Sbjct: 1 MAEEKTFPMTLEGKQKLEDELEEYKMKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAM 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+A++EN++ AE+ID + D ++ G +V+ E + + Y IVG+ E+D SG
Sbjct: 61 VESRIAQIENMLQYAEIIDNEDVDKDEVSMGRSVTFKELPDEEPETYSIVGESESDPLSG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+A+ L+G ++G+ + + P G +IL V
Sbjct: 121 KISNESPMAKGLLGHKIGEEVEIEIPSGTMKVKILDV 157
>gi|149917972|ref|ZP_01906466.1| transcription elongation factor GreB [Plesiocystis pacifica SIR-1]
gi|149821238|gb|EDM80642.1| transcription elongation factor GreB [Plesiocystis pacifica SIR-1]
Length = 164
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 87/152 (57%), Gaps = 2/152 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+ K++ EL + ERPR+ ++ A A GD SENAEYQ K + R+
Sbjct: 7 KITPFGYAKLKAELEELWKVERPRVTDEVAAAAALGDRSENAEYQYGKRRLREIDRRVRW 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V+ + G ++ FGA V++ + +G++K +Q+VG E DV+ G +S++SP
Sbjct: 67 LNKRLKELTVVRGAPADG-KVHFGAWVTVED-EAGEQKRWQLVGSDEFDVKDGKISVNSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
RAL+G+E+GD + V P G+ IL + +
Sbjct: 125 FGRALLGREVGDDVEVQRPKGDLELVILAIDY 156
>gi|21243461|ref|NP_643043.1| transcription elongation factor GreB [Xanthomonas axonopodis pv.
citri str. 306]
gi|25452986|sp|Q8PJ11|GREB_XANAC RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|21109017|gb|AAM37579.1| transcription elongation factor and transcript cleavage
[Xanthomonas axonopodis pv. citri str. 306]
Length = 168
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 82/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L
Sbjct: 15 ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + + + FGA V L + SG+ Y+IVG E D G +SI SP+
Sbjct: 75 SKRLEALRVVDTAPTDANAVFFGAQVELEDAGSGELLRYRIVGPDETDAGRGWISIDSPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + D + P G+ T+ ++ V +
Sbjct: 135 ARALLKKRVDDEFDAHLPAGKHTFVVVSVDY 165
>gi|261212255|ref|ZP_05926541.1| transcription elongation factor GreA [Vibrio sp. RC341]
gi|260838863|gb|EEX65514.1| transcription elongation factor GreA [Vibrio sp. RC341]
Length = 157
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 73/158 (46%), Positives = 117/158 (74%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTLRG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++TM + ++ FGATV+L++ N+ ++K YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVTTMENNGKVIFGATVTLIDVNTDEEKTYQIVGDDEADIKSGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +++ PGG K +EI +V ++
Sbjct: 120 SVNSPIARGLIGKMEGDEVAIVTPGGNKDFEIDRVEYL 157
>gi|303228842|ref|ZP_07315655.1| transcription elongation factor GreA [Veillonella atypica
ACS-134-V-Col7a]
gi|302516462|gb|EFL58391.1| transcription elongation factor GreA [Veillonella atypica
ACS-134-V-Col7a]
Length = 157
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 57/158 (36%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M D + +T++G K++ EL + + R + + I A YGD+SEN+EY AK Q
Sbjct: 1 MADVKETLLTAEGLKKLEDELAYYKSVRRIEVSQRIKTAIEYGDISENSEYDDAKNEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EG ++ELEN I A++ID S + GD ++ G+ V++++ D+ Y IVG EAD +
Sbjct: 61 IEGYISELENKINTAKIIDES-IKGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNN 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++GK GD + V+ P G T+++L +
Sbjct: 120 RISNESPVGKAILGKRKGDEVEVSTPDGPVTFKVLAIQ 157
>gi|218131388|ref|ZP_03460192.1| hypothetical protein BACEGG_03004 [Bacteroides eggerthii DSM 20697]
gi|317476400|ref|ZP_07935649.1| transcription elongation factor GreA [Bacteroides eggerthii
1_2_48FAA]
gi|217986320|gb|EEC52657.1| hypothetical protein BACEGG_03004 [Bacteroides eggerthii DSM 20697]
gi|316907426|gb|EFV29131.1| transcription elongation factor GreA [Bacteroides eggerthii
1_2_48FAA]
Length = 154
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 57/152 (37%), Positives = 97/152 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G++K+ +L+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ +
Sbjct: 3 YMSEEGYNKLLADLKQLETVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 63 LKQVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++GD+ + P G E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGIINLEVVNISF 154
>gi|329956657|ref|ZP_08297230.1| transcription elongation factor GreA [Bacteroides clarus YIT 12056]
gi|328524029|gb|EGF51105.1| transcription elongation factor GreA [Bacteroides clarus YIT 12056]
Length = 154
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 57/152 (37%), Positives = 97/152 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G++K+ +L+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ +
Sbjct: 3 YMSEEGYNKLLADLKQLETVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 63 LKQVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++GD+ + P G E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGMINLEVVNISF 154
>gi|28896926|ref|NP_796531.1| transcription elongation factor GreB [Vibrio parahaemolyticus RIMD
2210633]
gi|153837875|ref|ZP_01990542.1| transcription elongation factor GreB [Vibrio parahaemolyticus
AQ3810]
gi|260365887|ref|ZP_05778381.1| transcription elongation factor GreB [Vibrio parahaemolyticus
K5030]
gi|260877826|ref|ZP_05890181.1| transcription elongation factor GreB [Vibrio parahaemolyticus
AN-5034]
gi|260895525|ref|ZP_05904021.1| transcription elongation factor GreB [Vibrio parahaemolyticus
Peru-466]
gi|260902549|ref|ZP_05910944.1| transcription elongation factor GreB [Vibrio parahaemolyticus
AQ4037]
gi|31076677|sp|Q87TB8|GREB_VIBPA RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|28805134|dbj|BAC58415.1| transcription elongation factor GreB [Vibrio parahaemolyticus RIMD
2210633]
gi|149748738|gb|EDM59583.1| transcription elongation factor GreB [Vibrio parahaemolyticus
AQ3810]
gi|308088536|gb|EFO38231.1| transcription elongation factor GreB [Vibrio parahaemolyticus
Peru-466]
gi|308089794|gb|EFO39489.1| transcription elongation factor GreB [Vibrio parahaemolyticus
AN-5034]
gi|308109683|gb|EFO47223.1| transcription elongation factor GreB [Vibrio parahaemolyticus
AQ4037]
gi|308113424|gb|EFO50964.1| transcription elongation factor GreB [Vibrio parahaemolyticus
K5030]
gi|328471701|gb|EGF42578.1| transcription elongation factor GreB [Vibrio parahaemolyticus
10329]
Length = 163
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K++QE + E+RP I K ++ A + GD SENA+Y K L +
Sbjct: 1 MKTKLITREGYNKLKQEHDYLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + ++D S ++ FGA V + +GD K ++IVG +E +
Sbjct: 61 RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIEN-EAGDVKKFRIVGPEEIYGDAKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARA++ K++ + +V P G+K + I + +
Sbjct: 120 SIDSPMARAMLKKQVDEEFTVRTPEGDKEWFINSIEY 156
>gi|260588922|ref|ZP_05854835.1| transcription elongation factor GreA [Blautia hansenii DSM 20583]
gi|260540701|gb|EEX21270.1| transcription elongation factor GreA [Blautia hansenii DSM 20583]
Length = 181
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 87/154 (56%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K +T G K+++EL + +R + + I EAR GDLSENAEY AAK+ Q E R
Sbjct: 25 KKTLLTYAGLTKLEEELHDLKVNKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEAR 84
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+E I+ AEV+ + D+I+ G V + + ++ ++IVG EA+ G +S
Sbjct: 85 IEEIEKILKNAEVVVEDEVDLDKISVGCKVKVYDVEFEEEMEFKIVGSTEANSLEGKISN 144
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +ALIG GD +SV P G Y+IL +
Sbjct: 145 ESPVGKALIGARKGDTVSVEMPAGVMEYKILGIE 178
>gi|53720171|ref|YP_109157.1| transcription elongation factor GreB [Burkholderia pseudomallei
K96243]
gi|53726019|ref|YP_103667.1| transcription elongation factor GreB [Burkholderia mallei ATCC
23344]
gi|67643934|ref|ZP_00442677.1| transcription elongation factor GreB [Burkholderia mallei GB8 horse
4]
gi|121600632|ref|YP_992161.1| transcription elongation factor GreB [Burkholderia mallei SAVP1]
gi|124385438|ref|YP_001028606.1| transcription elongation factor GreB [Burkholderia mallei NCTC
10229]
gi|126440515|ref|YP_001059961.1| transcription elongation factor GreB [Burkholderia pseudomallei
668]
gi|126450620|ref|YP_001081495.1| transcription elongation factor GreB [Burkholderia mallei NCTC
10247]
gi|126454976|ref|YP_001067253.1| transcription elongation factor GreB [Burkholderia pseudomallei
1106a]
gi|166998289|ref|ZP_02264149.1| transcription elongation factor GreB [Burkholderia mallei PRL-20]
gi|167720736|ref|ZP_02403972.1| transcription elongation factor GreB [Burkholderia pseudomallei
DM98]
gi|167816923|ref|ZP_02448603.1| transcription elongation factor GreB [Burkholderia pseudomallei 91]
gi|167846828|ref|ZP_02472336.1| transcription elongation factor GreB [Burkholderia pseudomallei
B7210]
gi|167912070|ref|ZP_02499161.1| transcription elongation factor GreB [Burkholderia pseudomallei
112]
gi|167920044|ref|ZP_02507135.1| transcription elongation factor GreB [Burkholderia pseudomallei
BCC215]
gi|242316946|ref|ZP_04815962.1| transcription elongation factor GreB [Burkholderia pseudomallei
1106b]
gi|254175421|ref|ZP_04882081.1| transcription elongation factor GreB [Burkholderia mallei ATCC
10399]
gi|254191879|ref|ZP_04898382.1| transcription elongation factor GreB [Burkholderia pseudomallei
Pasteur 52237]
gi|254196029|ref|ZP_04902454.1| transcription elongation factor GreB [Burkholderia pseudomallei
S13]
gi|254202365|ref|ZP_04908728.1| transcription elongation factor GreB [Burkholderia mallei FMH]
gi|254207699|ref|ZP_04914049.1| transcription elongation factor GreB [Burkholderia mallei JHU]
gi|254298847|ref|ZP_04966297.1| transcription elongation factor GreB [Burkholderia pseudomallei
406e]
gi|254356401|ref|ZP_04972677.1| transcription elongation factor GreB [Burkholderia mallei
2002721280]
gi|52210585|emb|CAH36568.1| transcription elongation factor [Burkholderia pseudomallei K96243]
gi|52429442|gb|AAU50035.1| transcription elongation factor GreB [Burkholderia mallei ATCC
23344]
gi|121229442|gb|ABM51960.1| transcription elongation factor GreB [Burkholderia mallei SAVP1]
gi|124293458|gb|ABN02727.1| transcription elongation factor GreB [Burkholderia mallei NCTC
10229]
gi|126220008|gb|ABN83514.1| transcription elongation factor GreB [Burkholderia pseudomallei
668]
gi|126228618|gb|ABN92158.1| transcription elongation factor GreB [Burkholderia pseudomallei
1106a]
gi|126243490|gb|ABO06583.1| transcription elongation factor GreB [Burkholderia mallei NCTC
10247]
gi|147746612|gb|EDK53689.1| transcription elongation factor GreB [Burkholderia mallei FMH]
gi|147751593|gb|EDK58660.1| transcription elongation factor GreB [Burkholderia mallei JHU]
gi|148025398|gb|EDK83552.1| transcription elongation factor GreB [Burkholderia mallei
2002721280]
gi|157809034|gb|EDO86204.1| transcription elongation factor GreB [Burkholderia pseudomallei
406e]
gi|157939550|gb|EDO95220.1| transcription elongation factor GreB [Burkholderia pseudomallei
Pasteur 52237]
gi|160696465|gb|EDP86435.1| transcription elongation factor GreB [Burkholderia mallei ATCC
10399]
gi|169652773|gb|EDS85466.1| transcription elongation factor GreB [Burkholderia pseudomallei
S13]
gi|238525403|gb|EEP88831.1| transcription elongation factor GreB [Burkholderia mallei GB8 horse
4]
gi|242140185|gb|EES26587.1| transcription elongation factor GreB [Burkholderia pseudomallei
1106b]
gi|243065364|gb|EES47550.1| transcription elongation factor GreB [Burkholderia mallei PRL-20]
Length = 187
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLHLIDEARPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S + D++ FGATV ++ G++ IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GNEHTVTIVGVDEVDLDRGHVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ +GD +++ P G + ++L V +
Sbjct: 147 ISPVARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181
>gi|70731632|ref|YP_261373.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5]
gi|68345931|gb|AAY93537.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5]
Length = 157
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K+ +T G+D ++QEL + +E+RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKL-ITQDGYDALKQELDYLWREKRPDITQKVTWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ + + +V+ + R+ FGA V + + + K ++IVG E ++ +
Sbjct: 60 RRVRYIRKRLEDMKVVSYAPEQEGRVFFGAWVEVEN-EAAEIKRFRIVGYDEIYLRKDYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SP+ARAL+ KE+GD V+ P GE + I Q+ ++
Sbjct: 119 SIDSPMARALLKKEVGDEAVVHTPAGETCWWINQIDYV 156
>gi|332638064|ref|ZP_08416927.1| transcription elongation factor GreA [Weissella cibaria KACC 11862]
Length = 161
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T +G KI++EL E R I I AR++GDLSEN+EYQ+AK+ Q
Sbjct: 1 MAEEKTFPMTVEGKAKIEEELNTLITETRAEITGRIQIARSFGDLSENSEYQSAKDEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ L+N++ A +ID S ++ D ++ G V+ E + + Y IVG EA+ G
Sbjct: 61 VEGRINTLQNMLDNAVIIDSSEIADDEVSVGKKVTFKELPDEEPETYAIVGAVEANPLEG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
+S SPIA AL+GK++GD + V P G EI+ V
Sbjct: 121 KISNESPIAVALMGKKVGDQVEVPLPNGASMDVEIMAV 158
>gi|242237779|ref|YP_002985960.1| transcription elongation factor GreB [Dickeya dadantii Ech703]
gi|242129836|gb|ACS84138.1| transcription elongation factor GreB [Dickeya dadantii Ech703]
Length = 160
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D S ++ FGA V + +GD K ++IVG E + +SI +P+
Sbjct: 66 RKRLQIVRVVDYSPQQEGKVFFGAWVEVEN-EAGDIKRFRIVGPDEIYGRKDYISIDAPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + + + VN P G + + + ++ +
Sbjct: 125 ARALLKKTVDEDVVVNTPAGPRVWYVNKIDY 155
>gi|224023650|ref|ZP_03642016.1| hypothetical protein BACCOPRO_00357 [Bacteroides coprophilus DSM
18228]
gi|224016872|gb|EEF74884.1| hypothetical protein BACCOPRO_00357 [Bacteroides coprophilus DSM
18228]
Length = 154
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 59/152 (38%), Positives = 98/152 (64%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ K+ ELR+ + ERP+++ AI+EAR GDLSENAEY AAKE Q L E ++ +
Sbjct: 3 YMSEEGYQKLVAELRYLESVERPKVVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINQ 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 63 LKATIGDAKIIDTSKLKADTVQILSRVELKNVKTGMKMAYTIVSESEANLKQGKISVTTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++GD+ + P G+ + EI + +
Sbjct: 123 IAQGLLGKKVGDVAEITIPQGKISLEITGISF 154
>gi|262401668|ref|ZP_06078234.1| transcription elongation factor GreA [Vibrio sp. RC586]
gi|262352085|gb|EEZ01215.1| transcription elongation factor GreA [Vibrio sp. RC586]
Length = 157
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 72/158 (45%), Positives = 118/158 (74%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++TM + ++ FGATV++++ N+ ++K YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVTTMENNGKVIFGATVTVIDVNTDEEKTYQIVGDDEADIKSGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S++SPIAR LIGK GD +++ PGG K +EI +V ++
Sbjct: 120 SVNSPIARGLIGKLEGDEVAIATPGGNKDFEIDRVEYL 157
>gi|241764061|ref|ZP_04762099.1| transcription elongation factor GreB [Acidovorax delafieldii 2AN]
gi|241366592|gb|EER61073.1| transcription elongation factor GreB [Acidovorax delafieldii 2AN]
Length = 187
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 91/155 (58%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T++G+ ++++EL ERP+++ + A + GD SEN +Y K+ + R+
Sbjct: 27 KNYMTAQGYARLREELLELIDTERPKMVDIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S G D++ FGATV+ +E N G ++ I+G EAD + G VS
Sbjct: 87 RFLTKRLEIAEVVDPSLHDGSDQVFFGATVTYLE-NGGTERTITILGIDEADSRQGQVSW 145
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ +GD IS+ +PGG E+L V +
Sbjct: 146 MSPVARALLKSRVGDEISMGSPGGVLLLEVLNVRY 180
>gi|300774299|ref|ZP_07084163.1| transcription elongation factor GreA [Chryseobacterium gleum ATCC
35910]
gi|300506943|gb|EFK38077.1| transcription elongation factor GreA [Chryseobacterium gleum ATCC
35910]
Length = 156
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 56/152 (36%), Positives = 101/152 (66%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT +G +K++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q + E R+++
Sbjct: 4 YVTKEGLEKMKAELEQLETVERPKITQQIAEARDKGDLSENAEYDAAKEAQGMLEMRISK 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+++I+ +++ID S + +++ TV L + ++ + +V D E+D+++G +S+++P
Sbjct: 64 LKDVISTSKIIDESQLDTSKVSILTTVKLKNNATKQEQVFTLVPDNESDLKTGKISVNTP 123
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVL 156
IA+ L+GK +G+ + P G K ++E+L +
Sbjct: 124 IAKGLLGKAIGETAEITLPNGNKLSFEVLDIS 155
>gi|299529934|ref|ZP_07043362.1| Kelongation factor GreB [Comamonas testosteroni S44]
gi|298722106|gb|EFI63035.1| Kelongation factor GreB [Comamonas testosteroni S44]
Length = 188
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+ +I+ EL ERP+I++ + A + GD SEN +Y K+ + R+
Sbjct: 28 KNYITPQGYQRIKDELLDLIDNERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRI 87
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D +G D++ FGATVS V+ + G ++ I+G EAD VS
Sbjct: 88 RFLTKRLEIAEVVDPGVHAGSDQVFFGATVSYVD-DEGVERTITIMGIDEADSAQNQVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+P++RAL+ +GD +++ P G + EIL V +
Sbjct: 147 IAPVSRALLKARVGDEVALPTPAGVRMLEILDVSY 181
>gi|313677277|ref|YP_004055273.1| transcription elongation factor grea [Marivirga tractuosa DSM 4126]
gi|312943975|gb|ADR23165.1| transcription elongation factor GreA [Marivirga tractuosa DSM 4126]
Length = 157
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 93/156 (59%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T +G K+++EL + ERP+ I+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MSKVSYYTEEGLRKMKEELHHLKTVERPKASADIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ +LE ++ A VI S + ++ + K +G + Y +V ++EA+++ G +
Sbjct: 61 MKINKLETVVANARVIKESDVDTSKVGLLTKAKIKNKKNGMEVTYTMVSEEEANLKEGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SI SPI + ++GK++G+I V+AP G+ +EIL +
Sbjct: 121 SIKSPIGKGIMGKKVGEIAEVDAPAGKMEFEILDIS 156
>gi|149927812|ref|ZP_01916063.1| transcription elongation factor GreB [Limnobacter sp. MED105]
gi|149823434|gb|EDM82665.1| transcription elongation factor GreB [Limnobacter sp. MED105]
Length = 185
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T KG+ +++ EL + ERP ++ +S A + GD SEN +Y K+ + R+
Sbjct: 29 KNYITPKGYRRLRDELTHLVKTERPEVVSVVSWAASNGDRSENGDYLYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L AEV+D +T + I FGATV+ + G++ +IVG E D G +S
Sbjct: 89 RFLTKRTEIAEVVDPATQQELESIFFGATVTYINSK-GEELTVKIVGVDEVDTAKGHISW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ + GD++ + P G EI++V ++
Sbjct: 148 ISPVARALLKAKEGDVVQLMTPAGRDELEIVEVRYV 183
>gi|238021831|ref|ZP_04602257.1| hypothetical protein GCWU000324_01735 [Kingella oralis ATCC 51147]
gi|237866445|gb|EEP67487.1| hypothetical protein GCWU000324_01735 [Kingella oralis ATCC 51147]
Length = 162
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 55/160 (34%), Positives = 85/160 (53%), Gaps = 3/160 (1%)
Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M + K +T G +Q EL +ERP I++ ++ A + GD SEN +Y K
Sbjct: 1 MSEIKNYMTPAGHAALQNELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREI 60
Query: 60 EGRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
+ R+ L + A V++ T D++ F ATV+L E+ +G ++ +IVG+ E D
Sbjct: 61 DRRIRFLTKRLQDAVVVNPETREPTDQVFFAATVTL-ERGNGAEQTVRIVGEDEIDAAHN 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S SP+ARALI GD + +N P G + EIL V +I
Sbjct: 120 KISWKSPLARALIKAREGDSVWLNTPEGREQIEILAVEYI 159
>gi|284048763|ref|YP_003399102.1| GreA/GreB family elongation factor [Acidaminococcus fermentans DSM
20731]
gi|283952984|gb|ADB47787.1| GreA/GreB family elongation factor [Acidaminococcus fermentans DSM
20731]
Length = 172
Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 96/158 (60%), Gaps = 2/158 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T +G K++ EL + + E+R ++ + + A +YGD+SEN+EY AK Q E
Sbjct: 1 MAEQTILTEEGLKKLEDELDYLRSEKRQQVAERLKVAISYGDISENSEYDDAKNEQAFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL- 119
GR+ LEN+I A++I + ++ + ++ G V + + + D++ Y +VG EAD +
Sbjct: 61 GRILTLENMIRNAQIIKDTDITKNVVSLGCKVKIEDMETHDQEEYTVVGTTEADPMAEPP 120
Query: 120 -VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++G+++G ++ V P GE Y+I+ V
Sbjct: 121 RISNESPVGKAILGQKVGAVVKVTTPIGELDYKIVAVS 158
>gi|313906158|ref|ZP_07839506.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6]
gi|313468997|gb|EFR64351.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6]
Length = 161
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/158 (37%), Positives = 93/158 (58%), Gaps = 2/158 (1%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + K +T G ++ EL Q +R I + + EARA GDLSENAEY AAK+ Q
Sbjct: 1 MAEPKKTIMTYAGLKALESELEDLQVNKRKEIAEKLKEARAQGDLSENAEYDAAKDEQAQ 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ E+ENI+ A+V+ + + G + +++K ++ +QIVG EA+ G
Sbjct: 61 IEARIEEIENILKNADVVVEEEADSNTVNVGCKIKVLDKTYDEELEFQIVGSTEANSLKG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ RAL+G E+GD++++ P G++ YEIL +
Sbjct: 121 KISNESPVGRALLGHEIGDVVTIETPAGDEQYEILVIE 158
>gi|312795407|ref|YP_004028329.1| transcription elongation factor greB [Burkholderia rhizoxinica HKI
454]
gi|312167182|emb|CBW74185.1| Transcription elongation factor greB [Burkholderia rhizoxinica HKI
454]
Length = 186
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+ +++ EL ERP +++ +S A + GD SEN +Y K + R+
Sbjct: 28 KNYMTPEGYRRLKDELLQLIDVERPEVVRMVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S + D++ FGATV + G + IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDSSRQENTDQVFFGATVHYATSD-GAENQITIVGVDEVDLDRGRVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ +GD + ++ PGG + +IL V +
Sbjct: 147 ISPIARALLKARIGDTVPLHTPGGIEQIDILDVHY 181
>gi|78065582|ref|YP_368351.1| transcription elongation factor GreB [Burkholderia sp. 383]
gi|77966327|gb|ABB07707.1| transcription elongation factor GreB [Burkholderia sp. 383]
Length = 187
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S D++ FGATV E G+ IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQENVDQVFFGATVDY-ETPDGEDHTITIVGIDEVDLDHGCVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARALI ++GD + + P G + ++L V +
Sbjct: 147 ISPVARALIKAKIGDTVMLMTPAGPQPIDVLDVRY 181
>gi|255693071|ref|ZP_05416746.1| transcription elongation factor GreA [Bacteroides finegoldii DSM
17565]
gi|260621111|gb|EEX43982.1| transcription elongation factor GreA [Bacteroides finegoldii DSM
17565]
Length = 154
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 57/152 (37%), Positives = 96/152 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +
Sbjct: 3 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 63 LKTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++G++ + P G+ E++ + +
Sbjct: 123 IAQGLLGKKVGEVAEITVPQGKIALEVVNISF 154
>gi|160883671|ref|ZP_02064674.1| hypothetical protein BACOVA_01643 [Bacteroides ovatus ATCC 8483]
gi|260175216|ref|ZP_05761628.1| transcription elongation factor greA [Bacteroides sp. D2]
gi|293373408|ref|ZP_06619763.1| putative transcription elongation factor GreA [Bacteroides ovatus
SD CMC 3f]
gi|315923447|ref|ZP_07919687.1| transcription elongation factor greA [Bacteroides sp. D2]
gi|156111084|gb|EDO12829.1| hypothetical protein BACOVA_01643 [Bacteroides ovatus ATCC 8483]
gi|292631546|gb|EFF50169.1| putative transcription elongation factor GreA [Bacteroides ovatus
SD CMC 3f]
gi|313697322|gb|EFS34157.1| transcription elongation factor greA [Bacteroides sp. D2]
Length = 176
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 58/151 (38%), Positives = 94/151 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +
Sbjct: 25 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 84
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 85 LKATIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMIYTIVSESEANLKEGKISVNTP 144
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+GK++GD+ + P G+ E++ +
Sbjct: 145 IAQGLLGKKVGDVAEITVPQGKIALEVVNIS 175
>gi|325662823|ref|ZP_08151392.1| hypothetical protein HMPREF0490_02132 [Lachnospiraceae bacterium
4_1_37FAA]
gi|331086546|ref|ZP_08335624.1| hypothetical protein HMPREF0987_01927 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|325470875|gb|EGC74104.1| hypothetical protein HMPREF0490_02132 [Lachnospiraceae bacterium
4_1_37FAA]
gi|330410379|gb|EGG89811.1| hypothetical protein HMPREF0987_01927 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 160
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T G +++EL + +R + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKTILTYAGLKALEEELENLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ E+E I+ AEV+ + D+I G +V + +K ++ ++IVG EA+ G
Sbjct: 61 EARIEEIEKILKNAEVVVEDEVDFDKINIGCSVLVYDKEFDEEIQFKIVGSTEANSLQGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +AL+GK++GD I V G Y++L++
Sbjct: 121 ISNESPVGQALLGKKVGDEIQVETQAGVMEYKVLKIE 157
>gi|117620745|ref|YP_854834.1| transcription elongation factor GreB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117562152|gb|ABK39100.1| transcription elongation factor GreB [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 157
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K++QEL + +EERP + ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTKLITREGYNKLKQELDFLWREERPETTRKVAWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + ++D S ++ FGA V + + G+ K ++IVG E + +S
Sbjct: 61 RVRYLRKCLEELGIVDYSPAQEGKVFFGAWVEVENEE-GETKRFRIVGYDEIFERKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE+GD V P G+ + I ++ +
Sbjct: 120 IDSPMARALLKKEVGDEAIVRTPVGDACWYINEISY 155
>gi|284043142|ref|YP_003393482.1| transcription elongation factor GreA [Conexibacter woesei DSM
14684]
gi|283947363|gb|ADB50107.1| transcription elongation factor GreA [Conexibacter woesei DSM
14684]
Length = 161
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T G K++ EL E+R + I EAR +GD+SENAEY AK Q + E
Sbjct: 1 MPKDVILTPDGLAKLKSELEHLSTEKRREVAARIKEAREFGDISENAEYDDAKNEQAMLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE + A VID ++ D + G++V + + SG Y IVG EA+ +
Sbjct: 61 SKIAQLEEKLRAATVIDSRSVGTDVVGIGSSVQVADSQSGKSDTYVIVGSAEANPAERKL 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155
S SP+ +ALIG++ G+ +V P G+ + I ++
Sbjct: 121 SNESPVGKALIGRKAGETATVQLPNGKQRELRITKI 156
>gi|255994119|ref|ZP_05427254.1| transcription elongation factor GreA [Eubacterium saphenum ATCC
49989]
gi|255993787|gb|EEU03876.1| transcription elongation factor GreA [Eubacterium saphenum ATCC
49989]
Length = 158
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + + +T KG ++ Q+E R + I EA AYGDLSEN+EY AAK Q E
Sbjct: 1 MSETVFLTQKGLEEKQKEYDELVGVRRKEVADRIKEATAYGDLSENSEYDAAKNEQAELE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R++ LE+++ E+ID + GD + G V L ++ Y+IVG EAD + L+
Sbjct: 61 ERISVLEDMLNNYEIIDSNAAKGDVVDLGLNVHLKNITKKKEETYRIVGSAEADPFNNLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
S SPI + L+ ++G+ +S++ P G+ Y+IL++
Sbjct: 121 SNESPIGKGLLKHKVGETVSIDIPSGKTVKYKILKIS 157
>gi|54307404|ref|YP_128424.1| transcription elongation factor GreB [Photobacterium profundum SS9]
gi|46911824|emb|CAG18622.1| putative transcription elongation factor GreB [Photobacterium
profundum SS9]
Length = 156
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+DK+++EL + +EERP I K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTNLITREGYDKLKKELDFLWREERPEITKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +V+D S ++ FGA V + + + ++K ++IVG E ++ +S
Sbjct: 61 RVRYLRKRLEIVKVVDYSPQQDGKVFFGAFVEIENEEA-EQKAFRIVGPDEIYGRNDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE+ + V P G+K + + + +
Sbjct: 120 IDSPMARALLKKEVDEEFEVVTPQGKKLWFVNTIRY 155
>gi|325265886|ref|ZP_08132572.1| transcription elongation factor GreB [Kingella denitrificans ATCC
33394]
gi|324982524|gb|EGC18150.1| transcription elongation factor GreB [Kingella denitrificans ATCC
33394]
Length = 163
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/160 (36%), Positives = 86/160 (53%), Gaps = 4/160 (2%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M D K +T G ++Q EL +ERP I++ ++ A GD SEN +Y K
Sbjct: 1 MTDTPKNYLTPAGHRRLQDELYQLVHKERPEIVQVVNWAAGNGDRSENGDYLYGKRRMRE 60
Query: 59 NEGRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
+ R+ L + A V+D T D++ F ATV+L E+ G ++ +IVG+ E D
Sbjct: 61 IDRRIRFLTQRLANACVVDPETREATDQVFFAATVTL-ERGDGSEQVVRIVGEDEIDSAK 119
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
G +S SP+ARALI GDI+ +N P G +T EIL V +
Sbjct: 120 GKISWKSPLARALIKACDGDIVRLNTPEGTETIEILAVEY 159
>gi|296533019|ref|ZP_06895667.1| transcription elongation factor GreB [Roseomonas cervicalis ATCC
49957]
gi|296266648|gb|EFH12625.1| transcription elongation factor GreB [Roseomonas cervicalis ATCC
49957]
Length = 174
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 2/154 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T G +Q+ELR EERP++++ +S A + GD SENA+YQ K + R+
Sbjct: 20 FYMTPSGQAALQEELRALWSEERPKVVEIVSWAASLGDRSENADYQYGKRRLREIDRRVR 79
Query: 65 ELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L + R +V+D + + D++ FGA+V+ + + + IVG EAD G +S
Sbjct: 80 FLRKRLERVQVVDPAAQTRRDQVFFGASVTYA-REDDSEVSVTIVGIDEADADRGRISWV 138
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ +GD++ + P G + E+L + +
Sbjct: 139 SPVARALLKARIGDLVRIRTPAGPEEVEVLAITY 172
>gi|291533674|emb|CBL06787.1| transcription elongation factor GreA [Megamonas hypermegale
ART12/1]
Length = 178
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T +G K++++L + + R + + A A GDLSEN+EY AK Q
Sbjct: 1 MADKRVVLTEEGLKKLEEKLEYLKSVRRLEVADRLKAAIALGDLSENSEYDDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG + LE+ I +E+I + D + G TV + + + + Y IVG EAD G
Sbjct: 61 EGEILTLESQIRNSEIIKADDSNKDVVHLGNTVVIKDMEYDEDETYTIVGSTEADTTEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ A++GK +G ++ V P G Y+I+++
Sbjct: 121 ISNESPVGMAILGKTVGTVVQVKVPAGTLEYKIVEIK 157
>gi|227518219|ref|ZP_03948268.1| transcription elongation factor GreA [Enterococcus faecalis TX0104]
gi|227554362|ref|ZP_03984409.1| transcription elongation factor GreA [Enterococcus faecalis HH22]
gi|229547587|ref|ZP_04436312.1| transcription elongation factor GreA [Enterococcus faecalis TX1322]
gi|229548206|ref|ZP_04436931.1| transcription elongation factor GreA [Enterococcus faecalis ATCC
29200]
gi|293382163|ref|ZP_06628106.1| transcription elongation factor GreA [Enterococcus faecalis R712]
gi|293388526|ref|ZP_06633030.1| transcription elongation factor GreA [Enterococcus faecalis S613]
gi|307268839|ref|ZP_07550206.1| transcription elongation factor GreA [Enterococcus faecalis TX4248]
gi|307272673|ref|ZP_07553921.1| transcription elongation factor GreA [Enterococcus faecalis TX0855]
gi|307275101|ref|ZP_07556255.1| transcription elongation factor GreA [Enterococcus faecalis TX2134]
gi|307278545|ref|ZP_07559617.1| transcription elongation factor GreA [Enterococcus faecalis TX0860]
gi|307287391|ref|ZP_07567450.1| transcription elongation factor GreA [Enterococcus faecalis TX0109]
gi|307290828|ref|ZP_07570722.1| transcription elongation factor GreA [Enterococcus faecalis TX0411]
gi|312900390|ref|ZP_07759700.1| transcription elongation factor GreA [Enterococcus faecalis TX0470]
gi|312902920|ref|ZP_07762117.1| transcription elongation factor GreA [Enterococcus faecalis TX0635]
gi|312905741|ref|ZP_07764763.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO
512]
gi|312909063|ref|ZP_07767923.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO
516]
gi|312952203|ref|ZP_07771081.1| transcription elongation factor GreA [Enterococcus faecalis TX0102]
gi|227074315|gb|EEI12278.1| transcription elongation factor GreA [Enterococcus faecalis TX0104]
gi|227176508|gb|EEI57480.1| transcription elongation factor GreA [Enterococcus faecalis HH22]
gi|229306685|gb|EEN72681.1| transcription elongation factor GreA [Enterococcus faecalis ATCC
29200]
gi|229307277|gb|EEN73264.1| transcription elongation factor GreA [Enterococcus faecalis TX1322]
gi|291080446|gb|EFE17810.1| transcription elongation factor GreA [Enterococcus faecalis R712]
gi|291082130|gb|EFE19093.1| transcription elongation factor GreA [Enterococcus faecalis S613]
gi|306498137|gb|EFM67660.1| transcription elongation factor GreA [Enterococcus faecalis TX0411]
gi|306501564|gb|EFM70860.1| transcription elongation factor GreA [Enterococcus faecalis TX0109]
gi|306504782|gb|EFM73980.1| transcription elongation factor GreA [Enterococcus faecalis TX0860]
gi|306508219|gb|EFM77335.1| transcription elongation factor GreA [Enterococcus faecalis TX2134]
gi|306510668|gb|EFM79690.1| transcription elongation factor GreA [Enterococcus faecalis TX0855]
gi|306514843|gb|EFM83391.1| transcription elongation factor GreA [Enterococcus faecalis TX4248]
gi|310628220|gb|EFQ11503.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO
512]
gi|310629859|gb|EFQ13142.1| transcription elongation factor GreA [Enterococcus faecalis TX0102]
gi|310633692|gb|EFQ16975.1| transcription elongation factor GreA [Enterococcus faecalis TX0635]
gi|311290625|gb|EFQ69181.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO
516]
gi|311292480|gb|EFQ71036.1| transcription elongation factor GreA [Enterococcus faecalis TX0470]
gi|315028152|gb|EFT40084.1| transcription elongation factor GreA [Enterococcus faecalis TX2137]
gi|315030868|gb|EFT42800.1| transcription elongation factor GreA [Enterococcus faecalis TX4000]
gi|315032284|gb|EFT44216.1| transcription elongation factor GreA [Enterococcus faecalis TX0017]
gi|315036236|gb|EFT48168.1| transcription elongation factor GreA [Enterococcus faecalis TX0027]
gi|315145421|gb|EFT89437.1| transcription elongation factor GreA [Enterococcus faecalis TX2141]
gi|315148786|gb|EFT92802.1| transcription elongation factor GreA [Enterococcus faecalis TX4244]
gi|315151674|gb|EFT95690.1| transcription elongation factor GreA [Enterococcus faecalis TX0012]
gi|315154526|gb|EFT98542.1| transcription elongation factor GreA [Enterococcus faecalis TX0031]
gi|315156395|gb|EFU00412.1| transcription elongation factor GreA [Enterococcus faecalis TX0043]
gi|315160114|gb|EFU04131.1| transcription elongation factor GreA [Enterococcus faecalis TX0312]
gi|315163267|gb|EFU07284.1| transcription elongation factor GreA [Enterococcus faecalis TX0645]
gi|315165929|gb|EFU09946.1| transcription elongation factor GreA [Enterococcus faecalis TX1302]
gi|315169337|gb|EFU13354.1| transcription elongation factor GreA [Enterococcus faecalis TX1341]
gi|315171809|gb|EFU15826.1| transcription elongation factor GreA [Enterococcus faecalis TX1342]
gi|315174754|gb|EFU18771.1| transcription elongation factor GreA [Enterococcus faecalis TX1346]
gi|315576267|gb|EFU88458.1| transcription elongation factor GreA [Enterococcus faecalis
TX0309B]
gi|315578907|gb|EFU91098.1| transcription elongation factor GreA [Enterococcus faecalis TX0630]
gi|315582758|gb|EFU94949.1| transcription elongation factor GreA [Enterococcus faecalis
TX0309A]
gi|327536067|gb|AEA94901.1| transcription elongation factor GreA [Enterococcus faecalis OG1RF]
gi|329573310|gb|EGG54923.1| transcription elongation factor GreA [Enterococcus faecalis TX1467]
Length = 188
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K++QEL + +R I++ I AR++GDLSEN+EY++AK+ Q
Sbjct: 30 MVEKVYPMTLEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV 89
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LEN+I AE+ID + D ++ G TV+ E G+++ Y IVG EAD SG
Sbjct: 90 EGRITTLENMIRFAEIIDNDGVDQDEVSIGKTVTFQELPDGEEEEYTIVGSAEADPFSGK 149
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK+LGD + + PGG+ T +I +V
Sbjct: 150 ISNDSPIAQALIGKQLGDQVIIATPGGDMTVKITKVE 186
>gi|23015545|ref|ZP_00055318.1| COG0782: Transcription elongation factor [Magnetospirillum
magnetotacticum MS-1]
Length = 182
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K + +GF ++ EL + ERP++++ +S A GD SEN +Y K+ + R+
Sbjct: 27 KNYMRPQGFAALKAELSHLHKVERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRI 86
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D D++ FGATV+ ++ IVG EAD++ GL+S
Sbjct: 87 RFLTKRMESAHVVDPDQQKNRDQVFFGATVTYANARD-EEITVTIVGIDEADLERGLISW 145
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ GD + V P G + E++ + +
Sbjct: 146 ISPVARALLKASEGDTVPVRTPSGTEMIEVVAIRY 180
>gi|167895419|ref|ZP_02482821.1| transcription elongation factor GreB [Burkholderia pseudomallei
7894]
gi|254181033|ref|ZP_04887631.1| transcription elongation factor GreB [Burkholderia pseudomallei
1655]
gi|184211572|gb|EDU08615.1| transcription elongation factor GreB [Burkholderia pseudomallei
1655]
Length = 186
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+
Sbjct: 27 KNYITPAGHKRLRDELLHLIDEARPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 86
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S + D++ FGATV ++ G++ IVG E D+ G VS
Sbjct: 87 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GNEHTVTIVGVDEVDLDRGHVSW 145
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ +GD +++ P G + ++L V +
Sbjct: 146 ISPVARALLKARVGDTVTLLTPVGPEPIDVLDVRY 180
>gi|229822854|ref|ZP_04448924.1| hypothetical protein GCWU000282_00143 [Catonella morbi ATCC 51271]
gi|229787667|gb|EEP23781.1| hypothetical protein GCWU000282_00143 [Catonella morbi ATCC 51271]
Length = 159
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T +G K++ EL + +R II+ I AR+YGDLSEN+EY AAK+ Q
Sbjct: 1 MEEKVYPMTLEGKAKLEAELEDLKVNKRKEIIERIKIARSYGDLSENSEYDAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR++ +E +I A++ID ++ D + G TVS +E D+++Y IVG EAD
Sbjct: 61 EGRISVIEKMIRFAQIIDDRDVADDVVTLGRTVSFIELPGSDEESYTIVGSAEADPLEAK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+A+IGK+LGD+++V PGG +I ++
Sbjct: 121 ISNDSPIAKAIIGKKLGDVVTVETPGGSFDLKITKIE 157
>gi|330827878|ref|YP_004390830.1| transcription elongation factor GreB [Aeromonas veronii B565]
gi|328803014|gb|AEB48213.1| transcription elongation factor GreB [Aeromonas veronii B565]
Length = 157
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 88/156 (56%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K+++EL + ++ERP + + ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTKLITREGYNKLKEELDFLWRQERPEVTRKVAWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + ++D + ++ FGA V + + G+ K ++IVG E + +S
Sbjct: 61 RVRYLRKCLEELGIVDYAPAQEGKVFFGAWVEVENEE-GETKRFRIVGYDEIFERKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ KE+GD V P G+ + I ++ +
Sbjct: 120 IDSPMARALLKKEVGDEAIVRTPVGDVCWYINEISY 155
>gi|225569857|ref|ZP_03778882.1| hypothetical protein CLOHYLEM_05951 [Clostridium hylemonae DSM
15053]
gi|225161327|gb|EEG73946.1| hypothetical protein CLOHYLEM_05951 [Clostridium hylemonae DSM
15053]
Length = 160
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 87/155 (56%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E
Sbjct: 3 AKKKLLTYAGLKALEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ AEV+ + D+I G V + +K ++ ++IVG EA+ G +S
Sbjct: 63 RIEELEGILKNAEVVVEDEVDFDKINVGCAVKVFDKTFDEEMEFKIVGSTEANSLEGKIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+GK++GD + V GE Y++L++
Sbjct: 123 NESPVGQALMGKKVGDTVKVETQAGEMAYKVLEIS 157
>gi|329901876|ref|ZP_08272963.1| Transcription elongation factor GreB [Oxalobacteraceae bacterium
IMCC9480]
gi|327548968|gb|EGF33585.1| Transcription elongation factor GreB [Oxalobacteraceae bacterium
IMCC9480]
Length = 187
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 76/152 (50%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T GF ++++EL +RP ++ + A + GD SEN +Y K + R+
Sbjct: 30 YMTPAGFQRMREELLHLIDVDRPEVVHIVHWAASNGDRSENGDYIYGKRRLREIDRRIRF 89
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + AEV+D + G+ F E ++G++ IVG E D G +S SP
Sbjct: 90 LTKRLDVAEVVDPTIHHGNEQVFFGATVRYENSAGEQHVITIVGIDELDPLHGKISWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARA+ +GD I++ P G + +IL+V +
Sbjct: 150 VARAITKSRVGDTITLKTPSGVEELQILEVTY 181
>gi|313206078|ref|YP_004045255.1| transcription elongation factor grea [Riemerella anatipestifer DSM
15868]
gi|312445394|gb|ADQ81749.1| transcription elongation factor GreA [Riemerella anatipestifer DSM
15868]
gi|315023743|gb|EFT36746.1| Transcription elongation factor GreA [Riemerella anatipestifer
RA-YM]
gi|325336482|gb|ADZ12756.1| Transcription elongation factor [Riemerella anatipestifer RA-GD]
Length = 155
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/152 (38%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT +G +K++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q L E ++++
Sbjct: 3 YVTKEGLEKMKAELEQLESVERPKITQQIAEARDKGDLSENAEYDAAKEAQGLLEMKISK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+++I ++VID S + +++ TV L K + ++ + +V D E+D++SG +S+++P
Sbjct: 63 LKDLIATSKVIDESQLDISKVSILTTVKLFNKATKKEQVFTLVPDNESDLKSGKISVNTP 122
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVL 156
IA+ L+GK++G+ + P G + T+E+L +
Sbjct: 123 IAKGLLGKKVGETAEITLPNGNQLTFEVLDIS 154
>gi|218133837|ref|ZP_03462641.1| hypothetical protein BACPEC_01726 [Bacteroides pectinophilus ATCC
43243]
gi|217991212|gb|EEC57218.1| hypothetical protein BACPEC_01726 [Bacteroides pectinophilus ATCC
43243]
Length = 160
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
MV+ K +T G +++ EL+ + R + + + EARA GDLSENAEY AAK+ Q
Sbjct: 1 MVENKKNILTYTGLKQLEDELQQLKVVRRQEVAEKLKEARAQGDLSENAEYDAAKDEQRD 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ ELENI+ AEV+ + + D+I G V L + ++ + IVG EA+
Sbjct: 61 IEARIEELENILKNAEVVVETEVDSDKINIGCIVKLFDFEFDEELEFSIVGSTEANSLKN 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ ALIGK++GD+I V GE Y++L +
Sbjct: 121 KISNESPLGSALIGKKVGDVIKVETQMGEVEYKVLSIS 158
>gi|169335600|ref|ZP_02862793.1| hypothetical protein ANASTE_02015 [Anaerofustis stercorihominis DSM
17244]
gi|169258338|gb|EDS72304.1| hypothetical protein ANASTE_02015 [Anaerofustis stercorihominis DSM
17244]
Length = 157
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + ++ KG+ +++++L + + +R + I AR +GDLSENAEY AK+ Q
Sbjct: 1 MADKEVILSKKGYKELEEKLNYLKDVKRHEVASKIKAAREFGDLSENAEYDEAKQEQGFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG + E+E + A + D + + ++ G+ V + + + ++ Y IVG +E D+ +
Sbjct: 61 EGEIREIEYKLKNAVIFDDANKASGVVSLGSDVKVYDTDFDEEVVYTIVGSEEVDLDNNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI AL+GK++G+I V P G +IL+V
Sbjct: 121 ISNESPIGSALLGKKVGEIAKVQVPDGIVDLKILEVK 157
>gi|320160999|ref|YP_004174223.1| transcription elongation factor GreA [Anaerolinea thermophila
UNI-1]
gi|319994852|dbj|BAJ63623.1| transcription elongation factor GreA [Anaerolinea thermophila
UNI-1]
Length = 155
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T+ G ++Q+EL + + R + K + A GDLSENA+Y AKE Q E
Sbjct: 1 MAEIHYLTADGLRRLQEELEYLKGPAREELSKRLRFAIQQGDLSENADYIQAKEEQGFLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL I+ +I+ + D + GA V++ E+ + + YQ+VG +EAD + +
Sbjct: 61 GRILELTQILNNYVLIEENNNHKDVVNLGAKVTIQEEGF-EPETYQVVGPKEADPKKNRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SPI +ALIG+ +G++++ P G+ T++IL +
Sbjct: 120 SHESPIGKALIGRGVGEVVTAETPTGKITFKILSIE 155
>gi|134295030|ref|YP_001118765.1| transcription elongation factor GreB [Burkholderia vietnamiensis
G4]
gi|134138187|gb|ABO53930.1| transcription elongation factor GreB [Burkholderia vietnamiensis
G4]
Length = 187
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S D++ FGATV + G+ IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEDHTVTIVGIDEVDLDRGCVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALI ++GD +++ P G + ++L V +
Sbjct: 147 ISPIARALIKAKIGDTVTLMTPAGPQPIDVLDVRY 181
>gi|55820339|ref|YP_138781.1| transcription elongation factor GreA [Streptococcus thermophilus
LMG 18311]
gi|55822230|ref|YP_140671.1| transcription elongation factor GreA [Streptococcus thermophilus
CNRZ1066]
gi|81559864|sp|Q5M1J6|GREA_STRT1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|81561040|sp|Q5M638|GREA_STRT2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|55736324|gb|AAV59966.1| transcription elongation factor [Streptococcus thermophilus LMG
18311]
gi|55738215|gb|AAV61856.1| transcription elongation factor [Streptococcus thermophilus
CNRZ1066]
gi|312277654|gb|ADQ62311.1| Transcription elongation factor greA [Streptococcus thermophilus
ND03]
Length = 160
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T +++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYVMTLAEKKQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG++ LE I AE++D ++ D +A G TV + E + DK Y IVG AD+ SG
Sbjct: 61 EGQIQILETKIRYAEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK++GD +++ +P G + EIL V
Sbjct: 121 ISNESPIAQALIGKKVGDKVAIESPAGSYSVEILSVE 157
>gi|332885551|gb|EGK05797.1| hypothetical protein HMPREF9456_02061 [Dysgonomonas mossii DSM
22836]
Length = 156
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 98/155 (63%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T++G+ K+++E+ + ERP I K I+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MAITYMTAEGYKKLKEEINTLETTERPAISKQIAEARDKGDLSENAEYDAAKEAQGLLEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++A+++N++ A +I+ ++ D + V++ + K Y IV + EA+++ ++
Sbjct: 61 KIAQMKNLLANARLINEDSIGTDVVQILNKVTIRNTKNNQKMTYTIVAESEANLKENKMA 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+++PIA+ L+GK++GD+ + P G ++EI+ +
Sbjct: 121 VNTPIAQGLMGKKVGDVAEIKVPSGIMSFEIMDIS 155
>gi|325524704|gb|EGD02693.1| transcription elongation factor GreB [Burkholderia sp. TJI49]
Length = 187
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL ERP +++ +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S D++ FGATV + G+ IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQENVDQVFFGATVDYATPD-GEDHTITIVGIDEVDLDRGCVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARALI +GD +++ P G + ++L V +
Sbjct: 147 ISPVARALIKARIGDTVTLMTPAGPQPIDVLDVRY 181
>gi|28869465|ref|NP_792084.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213968119|ref|ZP_03396264.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato T1]
gi|301383559|ref|ZP_07231977.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato Max13]
gi|302058446|ref|ZP_07249987.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato K40]
gi|302133441|ref|ZP_07259431.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|37999581|sp|Q883T5|GREB_PSESM RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|28852706|gb|AAO55779.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213927099|gb|EEB60649.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato T1]
gi|330875597|gb|EGH09746.1| transcription elongation factor GreB [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|331016245|gb|EGH96301.1| transcription elongation factor GreB [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 157
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKI-ITQGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V+ S R+ FGA V + +GD K +++VG E ++ +
Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRVVGYDEIYGRNDYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+GD + VN P GEK + + +++
Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIVY 155
>gi|212692849|ref|ZP_03300977.1| hypothetical protein BACDOR_02348 [Bacteroides dorei DSM 17855]
gi|237709534|ref|ZP_04540015.1| transcription elongation factor GreA [Bacteroides sp. 9_1_42FAA]
gi|237724871|ref|ZP_04555352.1| transcription elongation factor GreA [Bacteroides sp. D4]
gi|265754743|ref|ZP_06089795.1| transcription elongation factor GreA [Bacteroides sp. 3_1_33FAA]
gi|212664638|gb|EEB25210.1| hypothetical protein BACDOR_02348 [Bacteroides dorei DSM 17855]
gi|229436609|gb|EEO46686.1| transcription elongation factor GreA [Bacteroides dorei 5_1_36/D4]
gi|229456590|gb|EEO62311.1| transcription elongation factor GreA [Bacteroides sp. 9_1_42FAA]
gi|263234857|gb|EEZ20425.1| transcription elongation factor GreA [Bacteroides sp. 3_1_33FAA]
Length = 154
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 58/152 (38%), Positives = 102/152 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ ++ +EL++ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++++
Sbjct: 3 YMSEEGYKQLIEELKYLESVERPKIVSAIAEARDKGDLSENAEYDAAKEAQGLLEMKISQ 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L++ I A++ID S M+ D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 63 LKSTIGDAKIIDTSKMNADTVQILTKVELKNVKTGMKMVYTIVAESEANLKLGKISVNTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++GD+ + P G+ + E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEITIPQGKISLEVVNISF 154
>gi|117922445|ref|YP_871637.1| transcription elongation factor GreB [Shewanella sp. ANA-3]
gi|117614777|gb|ABK50231.1| transcription elongation factor GreB [Shewanella sp. ANA-3]
Length = 167
Score = 148 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L +
Sbjct: 1 MKAHLITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +++D S +I FGA L +G+ Y+IVG E D + G ++
Sbjct: 61 RVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELEN-EAGECVRYRIVGKDELDTKLGYIT 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALIGK++ D + V P G K + I + +
Sbjct: 120 IDSPMARALIGKQVDDEVVVQTPSGPKEWYINDIRY 155
>gi|260771984|ref|ZP_05880901.1| transcription elongation factor GreB [Vibrio metschnikovii CIP
69.14]
gi|260612851|gb|EEX38053.1| transcription elongation factor GreB [Vibrio metschnikovii CIP
69.14]
Length = 158
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G++K++QE E+RP I K ++ A + GD SENA+Y K L +
Sbjct: 1 MKTKLITRAGYEKLKQEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L ++ +++D S ++ FGA V + +G+ K +IVG +E +
Sbjct: 61 RVRYLRKLLPELKIVDYSPQQEGKVFFGAWVEIEN-EAGEMKTLRIVGPEEIYGDAKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ + ++V P G+K + I + +
Sbjct: 120 SIDSPMARALLKKQVDEEVTVKTPTGDKLWFINAIRY 156
>gi|167837497|ref|ZP_02464380.1| transcription elongation factor GreB [Burkholderia thailandensis
MSMB43]
Length = 187
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL EERP ++K +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLHLIDEERPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S + D++ FGATV ++ G + IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GTEHTVTIVGVDEVDLDRGHVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ +GD +++ P G + ++L V +
Sbjct: 147 ISPVARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181
>gi|150003999|ref|YP_001298743.1| transcription elongation factor GreA [Bacteroides vulgatus ATCC
8482]
gi|254880754|ref|ZP_05253464.1| transcription elongation factor GreA [Bacteroides sp. 4_3_47FAA]
gi|294778035|ref|ZP_06743469.1| putative transcription elongation factor GreA [Bacteroides vulgatus
PC510]
gi|319639765|ref|ZP_07994495.1| transcription elongation factor GreA [Bacteroides sp. 3_1_40A]
gi|149932423|gb|ABR39121.1| transcription elongation factor GreA [Bacteroides vulgatus ATCC
8482]
gi|254833547|gb|EET13856.1| transcription elongation factor GreA [Bacteroides sp. 4_3_47FAA]
gi|294448093|gb|EFG16659.1| putative transcription elongation factor GreA [Bacteroides vulgatus
PC510]
gi|317388582|gb|EFV69431.1| transcription elongation factor GreA [Bacteroides sp. 3_1_40A]
Length = 154
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 58/152 (38%), Positives = 102/152 (67%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ ++ +EL++ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++++
Sbjct: 3 YMSEEGYKQLIEELKYLESVERPKIVSAIAEARDKGDLSENAEYDAAKEAQGLLEMKISQ 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L++ I A++ID S M+ D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 63 LKSTIGDAKIIDTSKMNADTVQILTKVELKNAKTGMKMVYTIVAESEANLKLGKISVNTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++GD+ + P G+ + E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEITIPQGKISLEVVNISF 154
>gi|153833935|ref|ZP_01986602.1| transcription elongation factor GreB [Vibrio harveyi HY01]
gi|148869773|gb|EDL68750.1| transcription elongation factor GreB [Vibrio harveyi HY01]
Length = 161
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+++++ EL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTNLITREGYNRLKTELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + + +++D S ++ FGA V + +GD KN++IVG E G +
Sbjct: 61 RVRYLRKRLEQVKMVDYSPQQEGKVFFGAWVEIEN-EAGDVKNFRIVGPDEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D +V P G K + I + +
Sbjct: 120 SIDSPMARALLKKEVDDEFAVRTPEGYKEWFINSIRY 156
>gi|289550623|ref|YP_003471527.1| Transcription elongation factor GreA [Staphylococcus lugdunensis
HKU09-01]
gi|315658118|ref|ZP_07910990.1| transcription elongation factor GreA [Staphylococcus lugdunensis
M23590]
gi|289180155|gb|ADC87400.1| Transcription elongation factor GreA [Staphylococcus lugdunensis
HKU09-01]
gi|315496447|gb|EFU84770.1| transcription elongation factor GreA [Staphylococcus lugdunensis
M23590]
Length = 158
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +G+D ++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 5 KQYPMTQEGYDNLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E+++ A +I+ T + + G TV+ VE ++++YQIVG EAD G +S
Sbjct: 65 IQRIEHMLRYALIIE-DTGDNNVVQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
SP+A++LIGK L D + V P GGE +I+ +
Sbjct: 124 ESPMAKSLIGKGLNDEVRVQLPNGGEIRVKIVDIK 158
>gi|34541325|ref|NP_905804.1| transcription elongation factor GreA [Porphyromonas gingivalis W83]
gi|188994287|ref|YP_001928539.1| putative transcription elongation factor [Porphyromonas gingivalis
ATCC 33277]
gi|34397641|gb|AAQ66703.1| transcription elongation factor GreA [Porphyromonas gingivalis W83]
gi|188593967|dbj|BAG32942.1| putative transcription elongation factor [Porphyromonas gingivalis
ATCC 33277]
Length = 156
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 58/151 (38%), Positives = 96/151 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G+DKI EL + +RP I + I+EAR GDLSENAEY AAKE Q + E ++A+
Sbjct: 5 YITQEGYDKILAELAELESVQRPEISRQIAEARDKGDLSENAEYDAAKEAQGILETKIAQ 64
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I A +ID S +S + + V++ +G Y +V D EA+++ +S+++P
Sbjct: 65 LKGLIANARIIDESQVSTESVQILNKVTIKNVKTGVVMAYTLVSDSEANLKENKISVNTP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+GK++GD++S+ P G +EI+ +
Sbjct: 125 IAQGLMGKKIGDLVSIKVPSGLVEFEIIDIT 155
>gi|167563692|ref|ZP_02356608.1| transcription elongation factor GreB [Burkholderia oklahomensis
EO147]
gi|167570842|ref|ZP_02363716.1| transcription elongation factor GreB [Burkholderia oklahomensis
C6786]
Length = 187
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S + D++ FGATV ++ G + IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GTEHTVTIVGVDEVDLDRGHVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ +GD +++ P G + ++L V +
Sbjct: 147 ISPVARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181
>gi|299535716|ref|ZP_07049037.1| transcription elongation factor GreA [Lysinibacillus fusiformis
ZC1]
gi|298728916|gb|EFI69470.1| transcription elongation factor GreA [Lysinibacillus fusiformis
ZC1]
Length = 162
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T++G K+++EL + E R I++ I AR +GDLSENAEY +AKE Q EGR
Sbjct: 5 KQYPMTAEGKRKLEEELVKLETETRKEIVERIKIARDFGDLSENAEYDSAKEEQAFLEGR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG----DKKNYQIVGDQEADVQSG 118
++ L+++I A +I ++ G TV+ VE +G D+++Y IVG EAD
Sbjct: 65 ISTLKSMIRNAVIISEDETDNSVVSLGKTVTFVEIINGKPSTDEESYTIVGSAEADPMEF 124
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ L+G+ G+ + V PGGE +IL +
Sbjct: 125 RISNESPIAKGLLGRAEGEEVVVQTPGGEMKVKILSIK 162
>gi|160887890|ref|ZP_02068893.1| hypothetical protein BACUNI_00293 [Bacteroides uniformis ATCC 8492]
gi|270294851|ref|ZP_06201052.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|317477839|ref|ZP_07937025.1| transcription elongation factor GreA [Bacteroides sp. 4_1_36]
gi|156862576|gb|EDO56007.1| hypothetical protein BACUNI_00293 [Bacteroides uniformis ATCC 8492]
gi|270274098|gb|EFA19959.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|316905975|gb|EFV27743.1| transcription elongation factor GreA [Bacteroides sp. 4_1_36]
Length = 154
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 58/152 (38%), Positives = 92/152 (60%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++
Sbjct: 3 YMSEDGYKKLMAELKHLETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINN 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 63 LKLTIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMVYTIVSESEANLKEGKISVNTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++GDI + P G E++ + +
Sbjct: 123 IAQGLLGKKVGDIAEIKVPQGMINLEVVNISF 154
>gi|71734764|ref|YP_274255.1| transcription elongation factor GreB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71555317|gb|AAZ34528.1| transcription elongation factor GreB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320329094|gb|EFW85092.1| transcription elongation factor GreB [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 157
Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKI-ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ +
Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE GD + VN P GEK + + +++
Sbjct: 119 SIDSPMARALLKKEEGDEVLVNTPEGEKLWFVNSIVY 155
>gi|160897466|ref|YP_001563048.1| transcription elongation factor GreB [Delftia acidovorans SPH-1]
gi|160363050|gb|ABX34663.1| transcription elongation factor GreB [Delftia acidovorans SPH-1]
Length = 188
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +GF++++ EL ERPRI++ + A + GD SEN +Y K+ + R+
Sbjct: 27 KNYITPQGFERLKTELLDLIDNERPRIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S +G ++I FGATV+ V+ + G+++ I+G EAD VS
Sbjct: 87 RFLTKRLEIAEVVDPSVHAGSEQIYFGATVTYVD-DEGEERTITIMGIDEADSARQQVSW 145
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+P++RAL+ +GD +++ P G +T E+L+V +
Sbjct: 146 IAPVSRALLKARVGDEVALPTPAGVRTLEVLEVTY 180
>gi|296160041|ref|ZP_06842861.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
gi|295889787|gb|EFG69585.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
Length = 189
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL ERP ++K +S A + GD SEN +Y K + R+
Sbjct: 29 KNYITPAGYRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AE++D S D++ FGATV G+ IVG E D+ VS
Sbjct: 89 RFLTKRLDLAEIVDSSKQENVDQVFFGATVEYA-TEDGEVHTVTIVGIDEVDLDIAHVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ ++GD +++ P G + +IL V +
Sbjct: 148 ISPIARALLKAKIGDTVTLYTPAGPQPIDILDVKY 182
>gi|295696559|ref|YP_003589797.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912]
gi|295412161|gb|ADG06653.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912]
Length = 158
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 57/151 (37%), Positives = 89/151 (58%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G K+++EL W + E+R + + + AR+YGDLSEN+EY AAKE Q E R+ +
Sbjct: 8 YMTEEGLRKLKEELEWLKTEKRAEVKERLKIARSYGDLSENSEYDAAKEEQAFVESRILQ 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE+ I RA++I ++ G+TV++ E G ++ Y IVG EAD +S SP
Sbjct: 68 LEDQIRRAKIIREEDRVEGVVSIGSTVTIRELPDGPEETYTIVGTAEADPGKFRISNESP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
I L+G+ G+ + + P GE + ILQ+
Sbjct: 128 IGAGLLGRRAGEEVGIQTPAGEILFRILQIR 158
>gi|325288417|ref|YP_004264598.1| transcription elongation factor GreA [Syntrophobotulus glycolicus
DSM 8271]
gi|324963818|gb|ADY54597.1| transcription elongation factor GreA [Syntrophobotulus glycolicus
DSM 8271]
Length = 156
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T G K++ EL + R + + I +A +GD+SEN+EY AK Q
Sbjct: 1 MPEKEVILTLDGLKKLEDELENLKTHRRKEVAERIKQAIEFGDISENSEYDDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE I+ A VID D ++ G+TV L + G+ + Y IVG EAD
Sbjct: 61 EGRIITLEKILRNARVID-DNEERDFVSLGSTVLLKDIEFGETEEYTIVGSAEADPAGNK 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++G+ G ++ VN P G YEI+ +
Sbjct: 120 ISNESPVGKAVLGQAKGSVVEVNVPAGILRYEIMDIR 156
>gi|329119869|ref|ZP_08248543.1| transcription elongation factor GreB [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464025|gb|EGF10336.1| transcription elongation factor GreB [Neisseria bacilliformis ATCC
BAA-1200]
Length = 190
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 2/154 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+
Sbjct: 35 YITPAGWQALKDELYSLVNKERPEIVQVVNWAASNGDRSENGDYLYGKRRMREIDRRIRF 94
Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + A+VID T D++ FGATV+L+ + +G ++ IVG E D +S S
Sbjct: 95 LTKRLEAAQVIDPETREATDQVFFGATVTLL-RGNGSEQVVSIVGIDETDAARNKISWIS 153
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+AR LI GD + + P G + EIL+V +I
Sbjct: 154 PLARCLIKAREGDAVVLRTPEGREDIEILEVAYI 187
>gi|269959400|ref|ZP_06173783.1| Transcription elongation factor greB [Vibrio harveyi 1DA3]
gi|269835837|gb|EEZ89913.1| Transcription elongation factor greB [Vibrio harveyi 1DA3]
Length = 161
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+++++ EL + +EERP + K ++ A + GD SENA+YQ K+ +
Sbjct: 1 MKTNLITREGYNRLKTELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + + +V+D S ++ FGA V + +GD KN++IVG E G +
Sbjct: 61 RVRYLRKRLEQVKVVDYSPQQEGKVFFGAWVEIEN-EAGDVKNFRIVGPDEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D +V P G K + + + +
Sbjct: 120 SIDSPMARALLKKEVDDEFAVRTPEGYKEWFLNSIRY 156
>gi|91224988|ref|ZP_01260247.1| transcription elongation factor GreB [Vibrio alginolyticus 12G01]
gi|269965882|ref|ZP_06179975.1| Transcription elongation factor greB [Vibrio alginolyticus 40B]
gi|91190234|gb|EAS76504.1| transcription elongation factor GreB [Vibrio alginolyticus 12G01]
gi|269829435|gb|EEZ83676.1| Transcription elongation factor greB [Vibrio alginolyticus 40B]
Length = 163
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K++QE + E+RP I K ++ A + GD SENA+Y K L +
Sbjct: 1 MKTKLITREGYNKLKQEHDYLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + ++D S ++ FGA V + +G+ K ++IVG +E +
Sbjct: 61 RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIEN-EAGEVKKFRIVGPEEIYGDAKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARA++ K++ + +V P GEK + I + +
Sbjct: 120 SIDSPMARAMLKKQVDEEFTVRTPEGEKEWFINSIEY 156
>gi|320450471|ref|YP_004202567.1| transcription cleavage factor GreA [Thermus scotoductus SA-01]
gi|320150640|gb|ADW22018.1| transcription cleavage factor GreA [Thermus scotoductus SA-01]
Length = 156
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +GF ++Q+EL + +R I +A GDL ENA Y A+ NE
Sbjct: 1 MKKPVYLTPEGFRRLQEELHHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE+++ RA V++ S D++A G V L E SG++ + IVG EAD+ SG +
Sbjct: 61 ARIAQLEDLLARAVVVE-GNGSYDQVALGCQVEL-ETESGERLSLAIVGSHEADIFSGKI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +AL+GK++GD++ + G + Y IL++
Sbjct: 119 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEIK 154
>gi|322373858|ref|ZP_08048393.1| transcription elongation factor GreA [Streptococcus sp. C150]
gi|321277230|gb|EFX54300.1| transcription elongation factor GreA [Streptococcus sp. C150]
Length = 160
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T ++++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYVMTLAEKEQLEAELEEYKLVRRPEVVERIKVARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG++ LE I AE++D ++ D +A G TV + E + DK Y IVG AD+ SG
Sbjct: 61 EGQIQILETKIRYAEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK++GD +++ +P G + EIL V
Sbjct: 121 ISNESPIAQALIGKKVGDKVAIESPAGSYSVEILSVE 157
>gi|167581001|ref|ZP_02373875.1| transcription elongation factor GreB [Burkholderia thailandensis
TXDOH]
Length = 187
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL EERP ++K +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLHLIDEERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S + D++ FGATV ++ G + IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GIEHTVTIVGIDEVDLDRGHVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ +GD +++ P G + ++L V +
Sbjct: 147 ISPIARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181
>gi|116627175|ref|YP_819794.1| transcription elongation factor GreA [Streptococcus thermophilus
LMD-9]
gi|122268222|sp|Q03MH4|GREA_STRTD RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116100452|gb|ABJ65598.1| transcription elongation factor GreA [Streptococcus thermophilus
LMD-9]
Length = 160
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T +++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYVMTLAEKKQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG++ LE I AE++D ++ D +A G TV + E + DK Y IVG AD+ SG
Sbjct: 61 EGQIQILETKIRYAEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK++GD +++ +P G + EIL V
Sbjct: 121 ISNESPIAQALIGKKVGDKVAIESPAGSYSVEILSVE 157
>gi|113972137|ref|YP_735930.1| transcription elongation factor GreB [Shewanella sp. MR-4]
gi|113886821|gb|ABI40873.1| transcription elongation factor GreB [Shewanella sp. MR-4]
Length = 167
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y K L +
Sbjct: 1 MKAHLITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +++D S +I FGA L +G++ Y+IVG E D + G ++
Sbjct: 61 RVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELEN-EAGERVRYRIVGKDELDTKLGYIT 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALIGK++ D + V P G K + I + +
Sbjct: 120 IDSPMARALIGKQVDDEVVVQTPSGPKEWYINDIRY 155
>gi|325916905|ref|ZP_08179150.1| transcription elongation factor GreB [Xanthomonas vesicatoria ATCC
35937]
gi|325536851|gb|EGD08602.1| transcription elongation factor GreB [Xanthomonas vesicatoria ATCC
35937]
Length = 167
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 82/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L
Sbjct: 15 ITPEGHSRLKVELEDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + + + FGA V L + +SG+ Y+IVG E D G +SI SP+
Sbjct: 75 SKRLEALRVVDTAPTDPNAVFFGAQVELEDADSGELLRYRIVGPDETDAVLGWISIDSPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + D P G+ T+ ++ V +
Sbjct: 135 ARALLKKRVDDEFEAQLPAGKHTFVVVSVDY 165
>gi|167763703|ref|ZP_02435830.1| hypothetical protein BACSTE_02081 [Bacteroides stercoris ATCC
43183]
gi|167697819|gb|EDS14398.1| hypothetical protein BACSTE_02081 [Bacteroides stercoris ATCC
43183]
Length = 154
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 57/152 (37%), Positives = 97/152 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G++K+ +L+ + ERP+I+ AI+EAR GDLSENAEY AAKE Q L E ++ +
Sbjct: 3 YMSEEGYNKLLADLKQLETIERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 63 LKQVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++GD+ + P G E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGIINLEVVNISF 154
>gi|126701179|ref|YP_001090076.1| transcription elongation factor GreA [Clostridium difficile 630]
gi|254977179|ref|ZP_05273651.1| transcription elongation factor [Clostridium difficile QCD-66c26]
gi|255094509|ref|ZP_05323987.1| transcription elongation factor [Clostridium difficile CIP 107932]
gi|255102765|ref|ZP_05331742.1| transcription elongation factor [Clostridium difficile QCD-63q42]
gi|255308586|ref|ZP_05352757.1| transcription elongation factor [Clostridium difficile ATCC 43255]
gi|255316260|ref|ZP_05357843.1| transcription elongation factor [Clostridium difficile QCD-76w55]
gi|255518921|ref|ZP_05386597.1| transcription elongation factor [Clostridium difficile QCD-97b34]
gi|255652100|ref|ZP_05399002.1| transcription elongation factor [Clostridium difficile QCD-37x79]
gi|255657503|ref|ZP_05402912.1| transcription elongation factor [Clostridium difficile QCD-23m63]
gi|260685073|ref|YP_003216358.1| transcription elongation factor GreA [Clostridium difficile CD196]
gi|260688731|ref|YP_003219865.1| transcription elongation factor GreA [Clostridium difficile R20291]
gi|296452825|ref|ZP_06894512.1| transcription elongation factor GreA [Clostridium difficile NAP08]
gi|296879923|ref|ZP_06903895.1| transcription elongation factor GreA [Clostridium difficile NAP07]
gi|306521834|ref|ZP_07408181.1| transcription elongation factor GreA [Clostridium difficile
QCD-32g58]
gi|123066490|sp|Q181F4|GREA_CLOD6 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|115252616|emb|CAJ70459.1| Transcription elongation factor greA (Transcript cleavage factor
GreA) [Clostridium difficile]
gi|260211236|emb|CBA66757.1| transcription elongation factor grea [Clostridium difficile CD196]
gi|260214748|emb|CBE07439.1| transcription elongation factor grea [Clostridium difficile R20291]
gi|296258373|gb|EFH05281.1| transcription elongation factor GreA [Clostridium difficile NAP08]
gi|296429037|gb|EFH14912.1| transcription elongation factor GreA [Clostridium difficile NAP07]
Length = 159
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 91/154 (59%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ +T +G+DK+++EL + +R + + I A ++GDLSENAEY AK+ Q E R
Sbjct: 5 KEFLLTQEGYDKLEEELENLKVVKRKEVAERIKVAISFGDLSENAEYDEAKKEQAQVEER 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +LEN++ +A +ID S + + + G+ V + + ++ Y IVG EAD G +S
Sbjct: 65 ILKLENMVRKAVIIDESKIDLNVVTIGSIVKVKDLEFDEEVEYTIVGSTEADPYDGKISN 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+G+ +++ V P G +EIL++
Sbjct: 125 ESPVGKALLGRAAKEVVEVQVPDGVAKFEILEIR 158
>gi|262392646|ref|YP_003284500.1| transcription elongation factor GreB [Vibrio sp. Ex25]
gi|262336240|gb|ACY50035.1| transcription elongation factor GreB [Vibrio sp. Ex25]
Length = 163
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K++QE + E+RP I K ++ A + GD SENA+Y K L +
Sbjct: 1 MKTKLITREGYNKLKQEHDYLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L + ++D S ++ FGA V + +G+ K ++IVG +E +
Sbjct: 61 RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIEN-EAGEVKKFRIVGPEEIYGDAKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARA++ K++ + +V P GEK + I + +
Sbjct: 120 SIDSPMARAMLKKQVDEEFTVRTPEGEKEWFINSIEY 156
>gi|266624959|ref|ZP_06117894.1| transcription elongation factor GreA [Clostridium hathewayi DSM
13479]
gi|288863148|gb|EFC95446.1| transcription elongation factor GreA [Clostridium hathewayi DSM
13479]
Length = 160
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T +G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKNILTYEGLKRYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ELE ++ AEV+ + D+I G V + + + ++ ++IVG EA+
Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKVYDVDEDEEMEFKIVGSTEANSLQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +AL+GK+ GD++ V G Y++L++
Sbjct: 121 ISNESPVGQALMGKKAGDVVDVETQAGVIQYKVLEIQ 157
>gi|30249800|ref|NP_841870.1| transcription elongation factor GreB [Nitrosomonas europaea ATCC
19718]
gi|30180837|emb|CAD85759.1| Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas
europaea ATCC 19718]
Length = 182
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ E + ERP ++K +S A + GD SEN +Y K + R+
Sbjct: 26 KNYITPGGYQRLKDEFDQLWRVERPELVKVVSWAASNGDRSENGDYIYGKRRLREIDRRL 85
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AE+ID D++ FGATV++ + G+++ Y IVG EA+ G +S
Sbjct: 86 RFLSRRLDNAEIIDPKQRGECDQVFFGATVTVCNQR-GEEQTYSIVGIDEAEPGRGWISW 144
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A+AL+ GD++ + PGG + E++++ +
Sbjct: 145 ISPLAKALLKAREGDVVPLQTPGGPQELEVVEIRY 179
>gi|91784882|ref|YP_560088.1| transcription elongation factor GreB [Burkholderia xenovorans
LB400]
gi|91688836|gb|ABE32036.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400]
Length = 189
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL ERP +++ +S A + GD SEN +Y K + R+
Sbjct: 29 KNYITPAGYRRMRDELLHLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AE++D S D++ FGATV G+ IVG E D+ VS
Sbjct: 89 RFLTKRLDLAEIVDSSKQENVDQVFFGATVEYA-TEDGEVHTVTIVGIDEVDLDIAHVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ ++GD +++ P G + +IL V +
Sbjct: 148 ISPIARALLKAKIGDTVTLYTPAGPQPIDILDVKY 182
>gi|134095318|ref|YP_001100393.1| transcription elongation factor and transcript cleavage
[Herminiimonas arsenicoxydans]
gi|133739221|emb|CAL62270.1| Transcription elongation factor GreB (Transcript cleavage factor
GreB) [Herminiimonas arsenicoxydans]
Length = 182
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 76/154 (49%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G +++ EL ERP +++ +S A + GD SEN +Y K +GR+
Sbjct: 24 KNYMTPQGHLRMKNELLNLIDVERPEVVQIVSWAASNGDRSENGDYIYGKRRLRQIDGRI 83
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L + AEV+D + G F E +GD+ I+G E D G +S
Sbjct: 84 RFLTKRLDLAEVVDPTVHYGSDQIFFGATVRYETQAGDEHTVTILGIDELDPLHGKISWI 143
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL GD +++ PGG + IL+V +
Sbjct: 144 SPVARALTKAREGDSVTLKTPGGLEELLILEVTY 177
>gi|225389819|ref|ZP_03759543.1| hypothetical protein CLOSTASPAR_03567 [Clostridium asparagiforme
DSM 15981]
gi|225044129|gb|EEG54375.1| hypothetical protein CLOSTASPAR_03567 [Clostridium asparagiforme
DSM 15981]
Length = 160
Score = 148 bits (373), Expect = 4e-34, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKHILTYAGLKQYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ELE ++ AEV+ + D+I G V L++ ++ Y IVG EA+
Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDTDKINIGCKVKLLDVEFDEEMEYFIVGSTEANSLQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL+GK +G+ + V G Y++L +
Sbjct: 121 ISNESPVGHALLGKGVGETVDVETQAGTIQYKVLNIQ 157
>gi|238926931|ref|ZP_04658691.1| elongation factor GreA [Selenomonas flueggei ATCC 43531]
gi|238885165|gb|EEQ48803.1| elongation factor GreA [Selenomonas flueggei ATCC 43531]
Length = 156
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T G++K+ ++L + + R I + + A A GDLSEN+EY AK Q
Sbjct: 1 MAEKKVMLTEDGYNKLVEKLNYLKSVRRIEIAERLKAAIALGDLSENSEYDDAKNEQAFL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG + ELEN I +++I G + G+ V++ + +++ + IVG EAD G
Sbjct: 61 EGEIQELENKIRNSDII--KAGDGKTVTMGSRVTVKDLEFDEEETFLIVGSTEADPDEGK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL+G+++G I+VNAP G Y+I+ +
Sbjct: 119 ISNESPLGEALLGQKIGRTINVNAPAGVIQYKIIDIK 155
>gi|323141548|ref|ZP_08076433.1| transcription elongation factor GreA [Phascolarctobacterium sp. YIT
12067]
gi|322413960|gb|EFY04794.1| transcription elongation factor GreA [Phascolarctobacterium sp. YIT
12067]
Length = 158
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 2/158 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M K +T++G K+++EL R+ E R I++ + EARA GDLSEN+EY AKE Q N
Sbjct: 1 MASKETILTAEGLRKLKEELAQRKGEIREEIVERLKEARAQGDLSENSEYDQAKEDQGKN 60
Query: 60 EGRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ ELE +I A +ID S + + ++ G+TV L + +GD++ Y IVG EAD
Sbjct: 61 EGRILELEQMIKTATIIDDSASKAAGIVSLGSTVLLKDVETGDEETYTIVGTTEADPFEN 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ A++G ++ D++ P GE +YEI+++
Sbjct: 121 RISNESPVGAAILGCKVHDVVVTKTPVGELSYEIVEIK 158
>gi|150009350|ref|YP_001304093.1| transcription elongation factor GreA [Parabacteroides distasonis
ATCC 8503]
gi|255016202|ref|ZP_05288328.1| transcription elongation factor GreA [Bacteroides sp. 2_1_7]
gi|256842355|ref|ZP_05547858.1| transcription elongation factor GreB [Parabacteroides sp. D13]
gi|262384735|ref|ZP_06077868.1| transcription elongation factor GreA [Bacteroides sp. 2_1_33B]
gi|298377865|ref|ZP_06987815.1| transcription elongation factor GreA [Bacteroides sp. 3_1_19]
gi|301312256|ref|ZP_07218173.1| transcription elongation factor GreA [Bacteroides sp. 20_3]
gi|149937774|gb|ABR44471.1| transcription elongation factor GreA [Parabacteroides distasonis
ATCC 8503]
gi|256735962|gb|EEU49293.1| transcription elongation factor GreB [Parabacteroides sp. D13]
gi|262293716|gb|EEY81651.1| transcription elongation factor GreA [Bacteroides sp. 2_1_33B]
gi|298265311|gb|EFI06974.1| transcription elongation factor GreA [Bacteroides sp. 3_1_19]
gi|300829678|gb|EFK60331.1| transcription elongation factor GreA [Bacteroides sp. 20_3]
Length = 156
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 58/151 (38%), Positives = 94/151 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+DKI E+ + + +RP I I+EAR GDLSENAEY AAKE Q + E ++A+
Sbjct: 5 YMTKDGYDKILAEINYLETVKRPEISAQIAEARDKGDLSENAEYDAAKEAQGIMEAKLAQ 64
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I+ A +ID S + D + V + + Y +V D EA+++ G +S+S+P
Sbjct: 65 LKGLISNARLIDESRVKTDEVQILNKVKIKNTKNNAVMTYTLVSDSEANLKEGKISVSTP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+GK++GD++ + P G T+EI+ +
Sbjct: 125 IAQGLMGKKVGDVVEIRVPSGLMTFEIMDIS 155
>gi|319787549|ref|YP_004147024.1| transcription elongation factor GreB [Pseudoxanthomonas suwonensis
11-1]
gi|317466061|gb|ADV27793.1| transcription elongation factor GreB [Pseudoxanthomonas suwonensis
11-1]
Length = 166
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 51/151 (33%), Positives = 83/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G D+++ EL + +RP ++KA++ A A GD SENAEY K+ + R+ L
Sbjct: 15 ITRAGHDRLKAELDDLWRVQRPEVVKALAAAAAEGDRSENAEYTYRKKQLAGIDRRVRYL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V++ + + + FGA V L ++G+ Y+IVG E D G +SI SP+
Sbjct: 75 SKRLPALRVVETAPSDPEAVFFGAWVELERIDTGELARYRIVGPDETDAALGHISIDSPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + D + V PGG + ++ V +
Sbjct: 135 ARALLRKRIDDEVEVQLPGGPARFVVVDVSY 165
>gi|187478047|ref|YP_786071.1| transcription elongation factor GreB [Bordetella avium 197N]
gi|115422633|emb|CAJ49158.1| transcription elongation factor [Bordetella avium 197N]
Length = 187
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 79/152 (51%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G+ +++ EL ERP +++ +S A + GD SEN +Y K+ + RM
Sbjct: 30 YMTPEGYARLRDELAHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRMRF 89
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + AEV+D S F + SG+ + IVG EA+ +G +S SP
Sbjct: 90 LTKRLDIAEVVDASLQPNRDQIFFGATVVYAGKSGEAQRVSIVGVDEAEPLAGKISWISP 149
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALI GD +++ PGG + +IL+V +
Sbjct: 150 VARALIKAREGDTVTLRTPGGVEALDILEVHY 181
>gi|18034645|gb|AAL57611.1|AF456234_1 transcription cleavage factor GreA [Thermus aquaticus]
Length = 156
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +GF ++Q+EL + +R I +A GDL ENA Y A+ NE
Sbjct: 1 MKKPVYLTPEGFRRLQEELNHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE+++ RA V++ S D++A G V L E SG++ + IVG EAD+ SG +
Sbjct: 61 ARIAQLEDLLARAVVVE-GNGSYDQVALGCQVEL-ETESGERLSLAIVGSHEADIFSGKI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +AL+GK++GD++ + G + Y IL++
Sbjct: 119 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEIK 154
>gi|312864022|ref|ZP_07724258.1| transcription elongation factor GreA [Streptococcus vestibularis
F0396]
gi|322517498|ref|ZP_08070370.1| transcription elongation factor GreA [Streptococcus vestibularis
ATCC 49124]
gi|311100435|gb|EFQ58642.1| transcription elongation factor GreA [Streptococcus vestibularis
F0396]
gi|322123874|gb|EFX95437.1| transcription elongation factor GreA [Streptococcus vestibularis
ATCC 49124]
Length = 160
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T ++++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYVMTLAEKEQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG++ LE I AE++D ++ D +A G TV + E + DK Y IVG AD+ SG
Sbjct: 61 EGQIQILETKIRYAEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK++GD +++ +P G + EIL V
Sbjct: 121 ISNESPIAQALIGKKVGDKVAIESPAGSYSVEILSVE 157
>gi|29347975|ref|NP_811478.1| transcription elongation factor greA [Bacteroides thetaiotaomicron
VPI-5482]
gi|29339877|gb|AAO77672.1| transcription elongation factor greA [Bacteroides thetaiotaomicron
VPI-5482]
Length = 154
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 59/151 (39%), Positives = 95/151 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +
Sbjct: 3 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I A++ID S + D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 63 LKTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+GK++GDI + P G+ E++ +
Sbjct: 123 IAQGLLGKKVGDIAEITVPQGKIALEVVNIS 153
>gi|330965418|gb|EGH65678.1| transcription elongation factor GreB [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 157
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKI-ITQGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V+ S R+ FGA V + +GD K +++VG E ++ +
Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRVVGYDEIYGRNDYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE GD + VN P GEK + + +++
Sbjct: 119 SIDSPMARALLKKEAGDEVLVNTPEGEKLWFVNSIVY 155
>gi|322514598|ref|ZP_08067631.1| transcription elongation factor GreB [Actinobacillus ureae ATCC
25976]
gi|322119537|gb|EFX91624.1| transcription elongation factor GreB [Actinobacillus ureae ATCC
25976]
Length = 162
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ + QEL++ ++ERP++ +A+SEA A D SENAEY K +
Sbjct: 1 MAKSNYITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALDDRSENAEYIYGKRRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + +++D ++ F A V L G+ K Y+IVG E D +
Sbjct: 61 RRVRFLSKRLEVLQIVDYHPKQEGKVFFRAWVELEN-EQGETKQYRIVGCDEFDPAKNWI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+AR+LIGKE+ D I V+ P G+ I ++ +
Sbjct: 120 SIDSPVARSLIGKEVDDEIKVDTPLGKSLLYINKIWY 156
>gi|257486310|ref|ZP_05640351.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|298486552|ref|ZP_07004612.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298159029|gb|EFI00090.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330888219|gb|EGH20880.1| transcription elongation factor GreB [Pseudomonas syringae pv. mori
str. 301020]
gi|330988435|gb|EGH86538.1| transcription elongation factor GreB [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331010600|gb|EGH90656.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 157
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKI-ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ +
Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE GD + VN P GEK + + + +
Sbjct: 119 SIDSPMARALLKKEEGDEVLVNTPEGEKLWFVNSIDY 155
>gi|154505278|ref|ZP_02042016.1| hypothetical protein RUMGNA_02792 [Ruminococcus gnavus ATCC 29149]
gi|153794476|gb|EDN76896.1| hypothetical protein RUMGNA_02792 [Ruminococcus gnavus ATCC 29149]
Length = 161
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 82/155 (52%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E
Sbjct: 4 AKKRLLTYAGLKALEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEA 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ AEV+ + D+I G V + + ++ + IVG E + G +S
Sbjct: 64 RIEELEGILKNAEVVVEDEVDLDKINVGCKVKVFDITFDEEMEFNIVGSTEVNSLEGKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+GK++GD + V G Y++L +
Sbjct: 124 NESPVGQALMGKKVGDTVDVETQAGVIQYKVLDIS 158
>gi|281421867|ref|ZP_06252866.1| transcription elongation factor GreA [Prevotella copri DSM 18205]
gi|281404109|gb|EFB34789.1| transcription elongation factor GreA [Prevotella copri DSM 18205]
Length = 154
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 83/151 (54%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+D++ EL+ E P + AI+EAR GDLSEN EY AAK Q R++
Sbjct: 3 YMSQEGYDELVAELQHMVNVELPAVRDAIAEARDKGDLSENFEYHAAKREQGKLLSRISF 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ ++ A VID S + D + + + + + NY IV EAD+ SG +SI SP
Sbjct: 63 KQKVLENARVIDKSRLKSDTVGLLSKIKITNLANKCSMNYTIVNPHEADLHSGKISIKSP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+AL+GK+ G+ + V P G + + V
Sbjct: 123 IAKALLGKKAGEEVMVKVPAGLLKFRLDSVE 153
>gi|197301310|ref|ZP_03166395.1| hypothetical protein RUMLAC_00041 [Ruminococcus lactaris ATCC
29176]
gi|197299628|gb|EDY34143.1| hypothetical protein RUMLAC_00041 [Ruminococcus lactaris ATCC
29176]
Length = 160
Score = 147 bits (372), Expect = 4e-34, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 85/155 (54%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E
Sbjct: 4 AKKRLLTYAGLKALEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEA 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ AEV+ + D+I G TV + + ++ ++IVG EA+ G +S
Sbjct: 64 RIEELEAILKNAEVVVEDEVDLDKINVGCTVKVFDITFDEEMEFKIVGSTEANSLEGKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+GK++ D++ V G Y++L +
Sbjct: 124 NESPVGQALMGKKVNDVVDVETQAGVIQYKVLDIQ 158
>gi|297616355|ref|YP_003701514.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus
DSM 12680]
gi|297144192|gb|ADI00949.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus
DSM 12680]
Length = 158
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K I +T +G K++ EL + R + I +A +GD++EN+EY+ AK Q
Sbjct: 1 MSEKEIILTKEGLKKLEDELEHLKSVRRKEVASRIKQAIEFGDITENSEYEDAKNEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE + A +I+ + D ++ G+ V L++ +G + + +V E+D +
Sbjct: 61 EGRILCLEKTLRNARLIEDDDIHTDVVSLGSRVRLLDIATGKEITFTVVASAESDPKQSK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ RA+IGK + + V P G KTY I+ +
Sbjct: 121 ISDESPVGRAIIGKPINSEVEVAVPAGTKTYRIVSIE 157
>gi|283851364|ref|ZP_06368646.1| transcription elongation factor GreA [Desulfovibrio sp. FW1012B]
gi|283573314|gb|EFC21292.1| transcription elongation factor GreA [Desulfovibrio sp. FW1012B]
Length = 162
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 70/156 (44%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ IP+T +GF ++++E R ++ERP II AI EAR GDL ENA Y+AA+E Q + E
Sbjct: 1 MESIPITVEGFRRLERE-LERLKKERPAIILAIKEAREEGDLRENAGYEAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +E+ + R VID+ST+ GD++ FGATV + + ++GD K Y ++G EA+ G +S
Sbjct: 60 RINFIESRMPRFNVIDLSTLGGDQVIFGATVEIEDVDTGDIKKYTLLGPDEAEPSKGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ AL+GK GD I V+AP G+ YEI+ + +
Sbjct: 120 ILSPVGLALLGKYEGDEIVVDAPRGKINYEIVSITF 155
>gi|294138934|ref|YP_003554912.1| transcription elongation factor GreB [Shewanella violacea DSS12]
gi|293325403|dbj|BAJ00134.1| transcription elongation factor GreB [Shewanella violacea DSS12]
Length = 161
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + +T KG+ + +EL++ +E RP I K + EA A GD SENA+Y K L +G
Sbjct: 1 MKALLITRKGWQALDKELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +++D S ++ FGA V L +G+ Y+IVG E D + G ++
Sbjct: 61 RVRYLVKRVEELKIVDYSPQQEGKVFFGAWVELEN-EAGEVVQYRIVGKDELDTKLGYIT 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP++RALIGK++ D I V P G K + + ++ +
Sbjct: 120 IDSPMSRALIGKQVDDEIVVQTPSGAKEWYVNKIQY 155
>gi|228469383|ref|ZP_04054397.1| transcription elongation factor GreA [Porphyromonas uenonis 60-3]
gi|228309067|gb|EEK17697.1| transcription elongation factor GreA [Porphyromonas uenonis 60-3]
Length = 156
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 96/155 (61%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+D + ++ + EERP++ + I+EAR GDLSENAEY AAKE Q E
Sbjct: 1 MGYYYMTQEGYDALNNTIKQLEAEERPKVTQQIAEARDKGDLSENAEYDAAKEAQAHLED 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++A L+ + A V++ S + D + V L+ K G++K+Y IV D EA+ + +S
Sbjct: 61 KIAMLKAQLGNARVLEPSQIKTDEVQILNHVRLLNKKKGEEKSYYIVSDAEANFKENKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+++PIA+ L+GK++GD+ + P G +EIL++
Sbjct: 121 VNTPIAKGLLGKKVGDVAEIQVPAGTLVFEILEIT 155
>gi|157363383|ref|YP_001470150.1| transcription elongation factor GreA [Thermotoga lettingae TMO]
gi|157313987|gb|ABV33086.1| transcription elongation factor GreA [Thermotoga lettingae TMO]
Length = 163
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 99/158 (62%), Gaps = 4/158 (2%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M K I +T +G+++++QEL +Q+ I + I EAR GDLSEN EY AK Q
Sbjct: 1 MNKKNVIYLTKEGYEELKQELDSLKQKLMYEISERIKEARELGDLSENTEYDEAKNEQGR 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
R+ ELE I+ +E+I+ + ++I+ G+ V + N+G++++ ++V QEAD+ S
Sbjct: 61 IGSRITELEQILNNSEIIENT--DSNQISVGSYVIIKNLNTGEERSVRLVNPQEADIFSN 118
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S+ SP+ RAL+G+++G+++ + AP G YEIL +
Sbjct: 119 KISVDSPVGRALMGRKVGEVVKLKAPAGSVRYEILGIS 156
>gi|83720256|ref|YP_442130.1| transcription elongation factor GreB [Burkholderia thailandensis
E264]
gi|167619078|ref|ZP_02387709.1| transcription elongation factor GreB [Burkholderia thailandensis
Bt4]
gi|83654081|gb|ABC38144.1| transcription elongation factor GreB [Burkholderia thailandensis
E264]
Length = 187
Score = 147 bits (372), Expect = 5e-34, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S + D++ FGATV ++ G + IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GIEHTVTIVGIDEVDLDRGHVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ +GD +++ P G + ++L V +
Sbjct: 147 ISPIARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181
>gi|163792651|ref|ZP_02186628.1| Transcription elongation factor [alpha proteobacterium BAL199]
gi|159182356|gb|EDP66865.1| Transcription elongation factor [alpha proteobacterium BAL199]
Length = 185
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 92/155 (59%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +GF ++ ELR ++ ERP++++ +S A GD SEN +Y K+ + R+
Sbjct: 29 KNYITPRGFQAMRDELRQLRRVERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D + + D++ FGATV+ ++ ++ +IVG EAD++ G VS
Sbjct: 89 RFLLKRLEIAEVVDPAQQKNHDQVFFGATVTYADEQDN-ERTVRIVGVDEADLERGEVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+PIARAL+ + GD++ + P G + E++++ +
Sbjct: 148 IAPIARALLKAQEGDVVELRTPAGPQNIEVVRIAY 182
>gi|332308523|ref|YP_004436374.1| transcription elongation factor GreB [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175852|gb|AEE25106.1| transcription elongation factor GreB [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 158
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+ K+ E ++RP I K ++ A + GD SENA+YQ K +
Sbjct: 1 MKTKLITPEGYKKLNDEHDELWLKQRPEITKIVTWAASLGDRSENADYQYNKRKLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L ++ ++++ S ++ FGA V + + G+ K ++IVG +E G +
Sbjct: 61 RVRYLRKLLPELQIVNYSPQQAGKVFFGAWVEIEN-DEGETKQFRIVGPEEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALI KE+ D+ SV P G K + I + +
Sbjct: 120 SIDSPMARALIKKEVDDVASVKTPTGYKDWYITSIEY 156
>gi|269797572|ref|YP_003311472.1| transcription elongation factor GreA [Veillonella parvula DSM 2008]
gi|282850020|ref|ZP_06259402.1| transcription elongation factor GreA [Veillonella parvula ATCC
17745]
gi|294793385|ref|ZP_06758530.1| transcription elongation factor GreA [Veillonella sp. 6_1_27]
gi|294795204|ref|ZP_06760338.1| transcription elongation factor GreA [Veillonella sp. 3_1_44]
gi|269094201|gb|ACZ24192.1| transcription elongation factor GreA [Veillonella parvula DSM 2008]
gi|282580209|gb|EFB85610.1| transcription elongation factor GreA [Veillonella parvula ATCC
17745]
gi|294453996|gb|EFG22371.1| transcription elongation factor GreA [Veillonella sp. 3_1_44]
gi|294455816|gb|EFG24181.1| transcription elongation factor GreA [Veillonella sp. 6_1_27]
Length = 157
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V + +T++G K+++EL + + R + + I A YGD+SEN+EY AK Q EG
Sbjct: 4 VKETLLTAEGLKKLEEELAYYKSVRRIEVSERIKTAIEYGDISENSEYDDAKNEQAFIEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ELEN I A++ID S + GD ++ G+ V++++ D+ Y IVG EAD + +S
Sbjct: 64 HIVELENKINTAKIIDES-VKGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNNRIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +A++GK GD + V+ P G T+++L +
Sbjct: 123 NESPVGKAILGKRKGDEVEVSTPDGPVTFKVLAIQ 157
>gi|218295530|ref|ZP_03496343.1| transcription elongation factor GreA [Thermus aquaticus Y51MC23]
gi|218244162|gb|EED10688.1| transcription elongation factor GreA [Thermus aquaticus Y51MC23]
Length = 156
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 2/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +GF ++Q+EL + +R I +A GDL ENA Y A+ NE
Sbjct: 1 MKKPVYLTPEGFRRLQEELNHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE+++ RA +++ S D++A G V L E SG++ + IVG EAD+ SG +
Sbjct: 61 ARIAQLEDLLARAVIVE-GNGSYDQVALGCQVEL-ETESGERLSLAIVGSHEADIFSGKI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +AL+GK++GD++ + G + Y IL++
Sbjct: 119 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEIK 154
>gi|126653894|ref|ZP_01725741.1| transcription elongation factor GreA [Bacillus sp. B14905]
gi|126589619|gb|EAZ83758.1| transcription elongation factor GreA [Bacillus sp. B14905]
Length = 162
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 4/158 (2%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T++G K+++EL + E R I++ I AR +GDLSENAEY +AKE Q EGR
Sbjct: 5 KQYPMTAEGKRKLEEELVKLETETRKEIVERIKIARDFGDLSENAEYDSAKEEQAFLEGR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG----DKKNYQIVGDQEADVQSG 118
++ L+++I A +I ++ G TV+ VE +G D+++Y IVG EAD
Sbjct: 65 ISTLKSMIRNAVIISEDETDNSVVSLGKTVTFVEIINGKPSTDEESYTIVGSAEADPMEF 124
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ L+G+ G+ ++V PGGE +I+ +
Sbjct: 125 RISNESPIAKGLLGRAEGEEVAVQTPGGEMKVKIVSIK 162
>gi|260655320|ref|ZP_05860808.1| transcription elongation factor GreA [Jonquetella anthropi E3_33
E1]
gi|260629768|gb|EEX47962.1| transcription elongation factor GreA [Jonquetella anthropi E3_33
E1]
Length = 152
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 61/149 (40%), Positives = 96/149 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D + EL + EER RI K I EAR++GDLSENAEY AAK+ Q+ EG++ L
Sbjct: 1 MTRQGYDALMAELIHLRSEERYRIAKRIEEARSFGDLSENAEYAAAKDEQSKLEGKIQSL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + RAEV+D S++ G IA G V+L+++ + Y IV +EA+ + G +S +SP+
Sbjct: 61 EYQLNRAEVVDSSSLDGSLIAVGTQVTLMDQTYRKQFVYSIVNSKEANPKEGRISSASPV 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
RA++ + GD + V P G + ++L++
Sbjct: 121 GRAILNRHKGDEVIVKTPKGIRKLKVLKI 149
>gi|260770789|ref|ZP_05879718.1| transcription elongation factor GreB [Vibrio furnissii CIP 102972]
gi|260614026|gb|EEX39216.1| transcription elongation factor GreB [Vibrio furnissii CIP 102972]
gi|315178831|gb|ADT85745.1| transcription elongation factor GreB [Vibrio furnissii NCTC 11218]
Length = 161
Score = 147 bits (371), Expect = 5e-34, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K+++E + E RP + K ++ A + GD SENA+Y K L +
Sbjct: 1 MKTKLITREGYEKLKKEHDYLWHERRPEVTKIVTWAASLGDRSENADYTFNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119
R+ L ++ +++D S ++ FGA V + +GD K ++IVG +E D
Sbjct: 61 RVRFLRKLLPELKIVDYSPQQEGKVFFGAWVEIENS-AGDVKRFRIVGPEEIYGDDVKEY 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SI SP+ARAL+ KE+ D V P GEK + I ++ +
Sbjct: 120 ISIDSPMARALLKKEVDDEFVVRTPSGEKEWFINRIEY 157
>gi|309792630|ref|ZP_07687091.1| transcription elongation factor GreA [Oscillochloris trichoides
DG6]
gi|308225352|gb|EFO79119.1| transcription elongation factor GreA [Oscillochloris trichoides
DG6]
Length = 157
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T G K++ EL ER + + I+ A+ GD+SE+ EY+ AK+ Q L
Sbjct: 1 MTDKPTYLTRDGRAKLEAELEELTTVERKHVAERIAAAKELGDISESGEYEDAKKSQALL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ EL++I++RAE+ID S + G++V++ + +++ + IVG EA+ + G
Sbjct: 61 EGRIRELKHILSRAELIDEDAHSTGEVRVGSSVTVRLEEDNEEETWTIVGSAEANPRQGR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI AL+GK ++V P G IL+V
Sbjct: 121 ISNESPIGAALLGKRARSKVTVQTPSGVMKLTILKVK 157
>gi|78045034|ref|YP_361163.1| transcription elongation factor GreA [Carboxydothermus
hydrogenoformans Z-2901]
gi|77997149|gb|ABB16048.1| transcription elongation factor GreA [Carboxydothermus
hydrogenoformans Z-2901]
Length = 157
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T +G K++QEL + +R + + I +A +GD+SEN+EY+ AK Q
Sbjct: 1 MKEKEVILTREGLKKLEQELEELKSVKRREVAERIKQAIEFGDISENSEYEDAKNAQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A++I+ D + G+ V L + G + Y +VG EAD +
Sbjct: 61 EGRIITLEKMLRNAKIIENDQQ-KDVVTLGSKVVLKDLEYGVVEEYYLVGSAEADPSANK 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ A++GK+ G ++ V P G YEI+ +L
Sbjct: 120 ISNESPVGSAILGKKKGTVVEVKVPAGTLKYEIVDIL 156
>gi|188990994|ref|YP_001903004.1| transcription elongation factor GreB [Xanthomonas campestris pv.
campestris str. B100]
gi|167732754|emb|CAP50948.1| greB [Xanthomonas campestris pv. campestris]
Length = 168
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 82/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L
Sbjct: 15 ITPEGHARLKAELDELWRLRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + + FGA + L + +SG+ Y+IVG E D SG +SI SP+
Sbjct: 75 SKRLEALRVVDTAPTDPQAVFFGAQIELEDADSGELLRYRIVGPDETDAGSGWISIDSPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + D P G+ T+ ++ V +
Sbjct: 135 ARALLKKRVDDEFEAQLPSGKHTFVVVVVEY 165
>gi|150021255|ref|YP_001306609.1| transcription elongation factor GreA [Thermosipho melanesiensis
BI429]
gi|166201184|sp|A6LMS3|GREA_THEM4 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|149793776|gb|ABR31224.1| transcription elongation factor GreA [Thermosipho melanesiensis
BI429]
Length = 156
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ I +T +G++K++ EL +Q+ I + I EAR GDLSEN+EYQ AK Q R
Sbjct: 4 EVIYLTKEGYEKLKTELDNLKQKLMFEIAERIKEARELGDLSENSEYQEAKNEQGRIAAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELEN++++AEVI+ + + I G V + +G++K QIV EADV + +S
Sbjct: 64 INELENMLSKAEVIEG--LDTNVINIGNWVIIKNLETGEEKTIQIVTPHEADVFNNKISF 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPI R L+GK++G+++ + AP G Y+IL +
Sbjct: 122 ESPIGRILVGKKVGEVVKIKAPKGVFKYQILGIK 155
>gi|262376606|ref|ZP_06069834.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145]
gi|262308316|gb|EEY89451.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145]
Length = 164
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K++ +
Sbjct: 1 MKSNLITRAGHDKLVAELKNLWHEERPEITKKVNWAASLGDRSENADYQYNKQILRKIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLV 120
R+ L + ++ID S ++ FGA V + + G++K +IVG D+ D +
Sbjct: 61 RVRYLGKRLEELKIIDFSPEQEGKVYFGAWVEIENEE-GEQKTLRIVGVDEIYDHHPQHI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SISSP+ARAL+GK++ D V P G+K + I + +
Sbjct: 120 SISSPMARALLGKQVDDEAEVLTPSGKKLWFINSIRY 156
>gi|237797206|ref|ZP_04585667.1| transcription elongation factor GreB [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331020056|gb|EGI00113.1| transcription elongation factor GreB [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 157
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKI-ITRDGHEALKKELDYLWREHRPDITRKVTWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V+ S R+ FGA V + + GD K ++IVG E ++ +
Sbjct: 60 RRVRYLRKRLEDMRVVLYSPEQEGRVFFGAWVEIENEE-GDLKKFRIVGYDEIYGRNDYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+GD + VN P GEK + + +++
Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIVY 155
>gi|331002785|ref|ZP_08326299.1| hypothetical protein HMPREF0491_01161 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413274|gb|EGG92642.1| hypothetical protein HMPREF0491_01161 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 160
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T +G +++EL+ + +R I + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MAEKKHILTYEGLKNLEEELQDLKVNKRKEIAEKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ +LEN++ AEV+ + D I G V +++K+ D+ +++IVG EAD +G
Sbjct: 61 EARIEQLENLLKNAEVVVEDEVDLDTIGIGCMVKILDKDFDDELDFKIVGSTEADSLAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +AL+GK +G+ V G Y +L++
Sbjct: 121 ISNESPLGKALLGKRIGETAVVETQAGVSEYMVLEIQ 157
>gi|37680902|ref|NP_935511.1| transcription elongation factor GreA [Vibrio vulnificus YJ016]
gi|37199652|dbj|BAC95482.1| transcription elongation factor [Vibrio vulnificus YJ016]
Length = 165
Score = 146 bits (370), Expect = 6e-34, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G +++ ++ R + RP I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 9 MEKVPMTARG-EQLLRKELERLLKRRPLITEAIAEARELGDLKENAEYHAAREEQGICEA 67
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID+S M + ++ FGATV+L++ ++ ++K YQIVGD EAD++SG +
Sbjct: 68 QIRDIEYKLSVAQVIDVSKMENNGKVIFGATVTLIDCDTEEEKTYQIVGDDEADIKSGRI 127
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIAR LIGK GD ++++ PGG K +EI V +
Sbjct: 128 SVNSPIARGLIGKMEGDEVAISTPGGMKDFEIDSVEY 164
>gi|15672618|ref|NP_266792.1| transcription elongation factor [Lactococcus lactis subsp. lactis
Il1403]
gi|281491116|ref|YP_003353096.1| transcription elongation factor GreA [Lactococcus lactis subsp.
lactis KF147]
gi|13878507|sp|Q9CHT2|GREA_LACLA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|12723539|gb|AAK04734.1|AE006296_8 transcription elongation factor GreA [Lactococcus lactis subsp.
lactis Il1403]
gi|281374866|gb|ADA64385.1| Transcription elongation factor GreA [Lactococcus lactis subsp.
lactis KF147]
gi|326406137|gb|ADZ63208.1| transcription elongation factor GreA [Lactococcus lactis subsp.
lactis CV56]
Length = 156
Score = 146 bits (370), Expect = 6e-34, Method: Composition-based stats.
Identities = 72/155 (46%), Positives = 105/155 (67%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M P+T +G DK++ EL + +RP +I I AR+YGDLSEN+EY+AAK+ Q E
Sbjct: 1 MEKTFPMTQEGLDKLKLELENLKLVKRPEVIDRIKVARSYGDLSENSEYEAAKDEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR++ +E +I AE++D + ++ D +A G V+ VE D+++YQIVG EAD SG +
Sbjct: 61 GRISTVETMIRYAEIVDNAKIAKDEVALGKNVTFVEVGETDEESYQIVGTAEADPFSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPIAR LIGK++GDI++V P GE T +I++V
Sbjct: 121 SNESPIARVLIGKKVGDIVNVPLPVGEMTVKIVKV 155
>gi|238922488|ref|YP_002936001.1| transcription elongation factor GreA [Eubacterium rectale ATCC
33656]
gi|238874160|gb|ACR73867.1| transcription elongation factor GreA [Eubacterium rectale ATCC
33656]
Length = 185
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 92/154 (59%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K +T G K++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R
Sbjct: 27 KKNILTYAGLKKLEDELEQLKVVKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEAR 86
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+E I+ AEV+ + D+I+ G + +++ ++ Y+IVG EA+ G +S
Sbjct: 87 IEEIEKILKNAEVVVEEEVDLDKISIGCKIRILDCEFDEELEYKIVGSTEANSLKGKISN 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+GK++GD ++V GE TY++L++
Sbjct: 147 ESPVGKALLGKKVGDTVTVETQVGELTYKVLEIQ 180
>gi|147669340|ref|YP_001214158.1| transcription elongation factor GreA [Dehalococcoides sp. BAV1]
gi|146270288|gb|ABQ17280.1| transcription elongation factor GreA [Dehalococcoides sp. BAV1]
Length = 266
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+KIP+T+ G+ K++ EL + +R +I+ + A D+ ENA Y AAKE + EG
Sbjct: 111 VEKIPMTASGYKKLEDELCILK-VKRIAVIEEMRLAALDKDMRENAPYHAAKEQRGQIEG 169
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E+ + AEV + + + ++ G TV L + +G++ Y +V +E + G +S
Sbjct: 170 RIKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRIS 229
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SSPI +AL + GD I + P G Y I + +
Sbjct: 230 ASSPIGKALFNRSKGDNIEIEVPSGTLQYVIEDISF 265
>gi|160944698|ref|ZP_02091925.1| hypothetical protein FAEPRAM212_02212 [Faecalibacterium prausnitzii
M21/2]
gi|158443882|gb|EDP20886.1| hypothetical protein FAEPRAM212_02212 [Faecalibacterium prausnitzii
M21/2]
gi|295104346|emb|CBL01890.1| transcription elongation factor GreA [Faecalibacterium prausnitzii
SL3/3]
Length = 161
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 1/158 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +++ G +Q+EL + + R + + I EAR++GDLSEN+EY AK Q L E
Sbjct: 1 MAQEIKMSAAGLKAMQEELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE I A +ID S +S D ++ G V++ E + + Y IVG EAD +G +
Sbjct: 61 NRITELEQTIKNAVIIDESELSVDNVSVGTHVTIRETGEDEAEEYDIVGRTEADAFNGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
S SP+ AL+GK +GD V P G Y +L +
Sbjct: 121 SDESPVGHALMGKAVGDKAEVLLPTGQTVVYTVLAITH 158
>gi|21231994|ref|NP_637911.1| transcription elongation factor GreB [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66767879|ref|YP_242641.1| transcription elongation factor GreB [Xanthomonas campestris pv.
campestris str. 8004]
gi|25452985|sp|Q8P7P8|GREB_XANCP RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|21113729|gb|AAM41835.1| transcription elongation factor and transcript cleavage
[Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|66573211|gb|AAY48621.1| transcription elongation factor and transcript cleavage
[Xanthomonas campestris pv. campestris str. 8004]
Length = 168
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 81/151 (53%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L
Sbjct: 15 ITPEGHARLKAELDELWRLRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D + + FGA V L + +SG+ Y+IVG E D G +SI SP+
Sbjct: 75 SKRLEALRVVDTAPTDPQAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + D P G+ T+ ++ V +
Sbjct: 135 ARALLKKRVDDEFEAQLPSGKHTFVVVVVEY 165
>gi|225181739|ref|ZP_03735178.1| transcription elongation factor GreA [Dethiobacter alkaliphilus AHT
1]
gi|225167610|gb|EEG76422.1| transcription elongation factor GreA [Dethiobacter alkaliphilus AHT
1]
Length = 156
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV K + +T G +K+++EL + + +R + I A ++GD+SEN+EY+ AK Q
Sbjct: 1 MVSKEVILTQGGLEKLEKELDYLKSTKRREVADRIKTAISFGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ ++I+ T + ++ G+TV L + + Y IVG EA+
Sbjct: 61 EGRIITLEKMLRNVKLINEET-DSETVSVGSTVILKDLEFDEDFEYTIVGSAEANPAENK 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++GK+L D++ V+ P G Y+I+++
Sbjct: 120 ISNESPVGKAILGKKLNDVVEVSVPAGILKYQIVKIS 156
>gi|260771823|ref|ZP_05880741.1| transcription elongation factor GreA [Vibrio metschnikovii CIP
69.14]
gi|260613115|gb|EEX38316.1| transcription elongation factor GreA [Vibrio metschnikovii CIP
69.14]
Length = 157
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 69/158 (43%), Positives = 118/158 (74%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +K+ ++ R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRG-EKLLRDELERLLKLRPKITQAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VIDI+ + + ++ FG+TVSL++ ++ ++K YQIVGD EA++++G +
Sbjct: 60 QIRDIEYKLSVAQVIDIAKIENTGKVIFGSTVSLIDVDTDEEKRYQIVGDDEAEIKAGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD ++++ PGG+K +EI +V ++
Sbjct: 120 SVSSPIARGLIGKMEGDEVTISTPGGDKVFEIDKVDYL 157
>gi|325299317|ref|YP_004259234.1| transcription elongation factor GreA [Bacteroides salanitronis DSM
18170]
gi|324318870|gb|ADY36761.1| transcription elongation factor GreA [Bacteroides salanitronis DSM
18170]
Length = 151
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 56/151 (37%), Positives = 97/151 (64%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+ K+ EL+ + ERP+++ AI+EAR GDLSENAEY AAKE Q + E ++ +L
Sbjct: 1 MSEEGYQKLVAELKHLEAVERPKVVAAIAEARDKGDLSENAEYDAAKEAQAMLEMKINQL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++PI
Sbjct: 61 KATIGDAKIIDTSKLKADTVQILSRVELKNVKTGMKMAYTIVSETEANLKQGKISVNTPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+ L+GK++GD+ + P G+ + E+ + +
Sbjct: 121 AQGLLGKKVGDVAEITIPQGKISLEVTGISF 151
>gi|289432606|ref|YP_003462479.1| GreA/GreB family elongation factor [Dehalococcoides sp. GT]
gi|288946326|gb|ADC74023.1| GreA/GreB family elongation factor [Dehalococcoides sp. GT]
Length = 266
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+KIP+T+ G+ K++ EL + +R +I+ + A D+ ENA Y AAKE + EG
Sbjct: 111 VEKIPMTASGYKKLEDELGILK-VKRIAVIEEMRLAALDKDMRENAPYHAAKEQRGQIEG 169
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E+ + AEV + + + ++ G TV L + +G++ Y +V +E + G +S
Sbjct: 170 RIKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRIS 229
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SSPI +AL + GD I + P G Y I + +
Sbjct: 230 ASSPIGKALFNRSKGDNIEIEVPSGTLQYVIEDISF 265
>gi|213622659|ref|ZP_03375442.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213855714|ref|ZP_03383954.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
Length = 128
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 58/128 (45%), Positives = 93/128 (72%), Gaps = 1/128 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVGD EAD + L+
Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLI 120
Query: 121 SISSPIAR 128
S++SPIAR
Sbjct: 121 SVNSPIAR 128
>gi|284035974|ref|YP_003385904.1| transcription elongation factor GreA [Spirosoma linguale DSM 74]
gi|283815267|gb|ADB37105.1| transcription elongation factor GreA [Spirosoma linguale DSM 74]
Length = 157
Score = 146 bits (370), Expect = 7e-34, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 98/155 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T +G ++++ EL + + R I + I+EAR GDLSENAEY AAK+ Q L+E
Sbjct: 1 MAKISYYTEEGLNRLKAELVELKTKGRAAIARQIAEARDKGDLSENAEYDAAKDAQGLHE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++++LE +++ A V+D ST+ +++ + V + K SG + Y +V ++EAD+++G +
Sbjct: 61 LKISKLEEVLSNARVLDESTIDASQVSVLSKVKIKNKKSGAEMLYILVSEEEADLKTGRI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S+ SPI + L+GK +GD + P G +E++++
Sbjct: 121 SVGSPIGKGLLGKRVGDTAEIKVPAGVLEFEVMEI 155
>gi|313886047|ref|ZP_07819785.1| transcription elongation factor GreA [Porphyromonas asaccharolytica
PR426713P-I]
gi|332299382|ref|YP_004441303.1| transcription elongation factor GreA [Porphyromonas asaccharolytica
DSM 20707]
gi|312924577|gb|EFR35348.1| transcription elongation factor GreA [Porphyromonas asaccharolytica
PR426713P-I]
gi|332176445|gb|AEE12135.1| transcription elongation factor GreA [Porphyromonas asaccharolytica
DSM 20707]
Length = 156
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 96/155 (61%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+D + ++ + EERP++ + I+EAR GDLSENAEY AAKE Q E
Sbjct: 1 MGYYYMTQEGYDALNNTIKQLEAEERPKVTQQIAEARDKGDLSENAEYDAAKEAQAHLED 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++A L+ + A V++ S + D + V L+ K G++K+Y IV D EA+ + +S
Sbjct: 61 KIAMLKAQLGNARVLEPSQIKTDEVQILNHVRLLNKKKGEEKSYYIVSDAEANFKENKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+++PIA+ L+GK++GDI + P G +EIL++
Sbjct: 121 VNTPIAKGLLGKKVGDIAEIQVPAGTLVFEILEIT 155
>gi|311747108|ref|ZP_07720893.1| transcription elongation factor GreB [Algoriphagus sp. PR1]
gi|126578813|gb|EAZ82977.1| transcription elongation factor GreB [Algoriphagus sp. PR1]
Length = 171
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 12/169 (7%)
Query: 1 MVDKIP------------VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
M KIP +TS+G K+++E + ERP + ++ A + GD SENA+
Sbjct: 1 MRRKIPESTLPKLNRSQLITSEGLQKLKEEHDHLWRVERPDVTAKVAWAASLGDRSENAD 60
Query: 49 YQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV 108
Y K+ + R+ L I +VI+ ++ FGA V + + G K ++IV
Sbjct: 61 YHYNKKRLREIDNRLRYLRKCIDDFKVIEYHPNQEGKVNFGAWVEIKNEKKGLKNRFRIV 120
Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
G +E +S+ SP+A++L+GK +GD + V+ G+ ++IL++ +
Sbjct: 121 GYEELIGNKNYISMDSPMAKSLLGKAVGDEVIVSTKLGDFVWKILKIEY 169
>gi|294668892|ref|ZP_06733982.1| transcription elongation factor GreB [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291309189|gb|EFE50432.1| transcription elongation factor GreB [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 162
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 2/154 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+
Sbjct: 7 YITPAGWRSLKDELYRLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIRF 66
Query: 66 LENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + A+V+D T D+I FGATV+L+ + +G ++ +IVG E D +S S
Sbjct: 67 LTKRLEAAQVVDPETREATDQIFFGATVTLL-RGNGSEQTVKIVGIDEIDTAQNKISWIS 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P+AR LI GD +S+N P G + EIL+V ++
Sbjct: 126 PLARCLIKAREGDEVSLNTPEGREDIEILEVAYV 159
>gi|238019652|ref|ZP_04600078.1| hypothetical protein VEIDISOL_01526 [Veillonella dispar ATCC 17748]
gi|237863693|gb|EEP64983.1| hypothetical protein VEIDISOL_01526 [Veillonella dispar ATCC 17748]
Length = 157
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V + +T++G K+++EL + + R + + I A YGD+SEN+EY AK Q EG
Sbjct: 4 VKETLLTAEGLKKLEEELMYYKSVRRIEVSERIKTAIEYGDISENSEYDDAKNEQAFIEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ELEN I A++ID S + GD ++ G+ V++++ D+ Y IVG EAD + +S
Sbjct: 64 HIVELENKINTAKIIDES-VKGDVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNNRIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +A++GK GD + V+ P G T+++L +
Sbjct: 123 NESPVGKAILGKRKGDEVEVSTPDGPVTFKVLAIQ 157
>gi|330951745|gb|EGH52005.1| transcription elongation factor GreB [Pseudomonas syringae Cit 7]
Length = 157
Score = 146 bits (370), Expect = 8e-34, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKI-ITRDGHEALKKELDYLGREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ +
Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+GD + VN P GEK + + + +
Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIDY 155
>gi|109896438|ref|YP_659693.1| transcription elongation factor GreB [Pseudoalteromonas atlantica
T6c]
gi|109698719|gb|ABG38639.1| transcription elongation factor GreB [Pseudoalteromonas atlantica
T6c]
Length = 158
Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+ K+ E ++RP I K ++ A + GD SENA+YQ K +
Sbjct: 1 MKTKLITPEGYKKLNDEHDELWLKQRPEITKIVTWAASLGDRSENADYQYNKRKLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L ++ ++++ S ++ FGA V + + G+ K ++IVG +E G +
Sbjct: 61 RVRYLRKLLPELQIVNYSPQQAGKVFFGAWVEIEN-DEGETKQFRIVGPEEIYGDAKGYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARALI KE+ D+ SV P G K + + + +
Sbjct: 120 SIDSPMARALIKKEVDDVASVKTPTGYKDWYVTSIEY 156
>gi|91787228|ref|YP_548180.1| GreA/GreB family elongation factor [Polaromonas sp. JS666]
gi|91696453|gb|ABE43282.1| GreA/GreB family elongation factor [Polaromonas sp. JS666]
Length = 190
Score = 146 bits (369), Expect = 8e-34, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+++++ EL ERP++++ + A + GD SEN +Y K+ + R+
Sbjct: 26 KNYITPVGYERLRAELLDLIDNERPKVVEIVHWAASNGDRSENGDYHYGKKRLREIDRRI 85
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AE+ + S G D++ FGATV+ V+ + G+++ I+G EA+ G +S
Sbjct: 86 RFLTQRLEIAEISNPSIHHGSDQVFFGATVTYVD-DRGEERTVTILGIDEANSALGQISW 144
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP ARAL+ +GD +++ P G + E+L+V +
Sbjct: 145 ISPAARALLKSRVGDEVNLVTPQGLQVLEVLKVDY 179
>gi|258510226|ref|YP_003183660.1| transcription elongation factor GreA [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257476952|gb|ACV57271.1| transcription elongation factor GreA [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 158
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 94/157 (59%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T +G K+++EL + +R + + I A +YGD+SEN+EY+ AK Q
Sbjct: 1 MADKEVLLTPEGLRKLEEELELLKSVKRREVAERIKVAISYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE + A VI+ + + ++ G+TV +++ + ++ Y IVG EA+
Sbjct: 61 EGRIMTLEKQLRNARVINEDEVDTNVVSIGSTVKVLDLDLDEEVEYTIVGSAEANPAENK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +AL+GK++G I+ VN P G ++IL++
Sbjct: 121 ISNESPVGKALLGKQIGSIVEVNVPAGVIKFKILEIK 157
>gi|167629420|ref|YP_001679919.1| transcription elongation factor grea [Heliobacterium modesticaldum
Ice1]
gi|167592160|gb|ABZ83908.1| transcription elongation factor grea [Heliobacterium modesticaldum
Ice1]
Length = 160
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T++G K+++EL + + +R ++ + I +A YGD+SEN+EY+ AK Q
Sbjct: 1 MEEKQVMLTAEGLKKLEEELEFLKSHKRGQVAERIKQAIDYGDISENSEYEDAKNEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A++I+ + + GA V L + + Y IVG EAD
Sbjct: 61 EGRIITLEKMLRNAKLIEGGEGETNVVTIGARVLLKDLEDDSEFEYTIVGSAEADPSQSK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +AL+G+ G ++ V P G+ YEI+ +
Sbjct: 121 ISNVSPVGKALLGQPKGAVVEVQVPMGKIKYEIVDI 156
>gi|302385514|ref|YP_003821336.1| GreA/GreB family elongation factor [Clostridium saccharolyticum
WM1]
gi|302196142|gb|ADL03713.1| GreA/GreB family elongation factor [Clostridium saccharolyticum
WM1]
Length = 160
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 91/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MVDK +T +G K + EL+ + +R + + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MVDKKNILTYEGLKKYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ELE ++ AEV+ + D+I G V + + + ++ ++IVG EA+
Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKVYDVDEDEEMEFKIVGSTEANSLQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ ALIG+++GD++ V G Y++L++
Sbjct: 121 ISNESPVGHALIGRKVGDVVDVETQSGVIQYKVLEIQ 157
>gi|299147539|ref|ZP_07040603.1| transcription elongation factor GreA [Bacteroides sp. 3_1_23]
gi|298514326|gb|EFI38211.1| transcription elongation factor GreA [Bacteroides sp. 3_1_23]
Length = 154
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 58/151 (38%), Positives = 95/151 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E R+ +
Sbjct: 3 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I A++ID S + D + + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 63 LKATIADAKIIDESKLKTDSVQILSKVELKNVKNGMKMIYTIVSESEANLKEGKISVNTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+GK++GD+ + P G+ E++ +
Sbjct: 123 IAQGLLGKKVGDVAEITVPQGKIALEVVNIS 153
>gi|229525286|ref|ZP_04414691.1| transcription elongation factor GreA [Vibrio cholerae bv. albensis
VL426]
gi|229338867|gb|EEO03884.1| transcription elongation factor GreA [Vibrio cholerae bv. albensis
VL426]
Length = 150
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 72/151 (47%), Positives = 111/151 (73%), Gaps = 2/151 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MMEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICE 59
Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
++ ++E ++ A+VID++ M ++ FGATV++++ NS ++K YQIVGD EAD++SG
Sbjct: 60 AQIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGR 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTY 150
+S++SPIAR LIGK GD +S+ PGG K Y
Sbjct: 120 ISVNSPIARGLIGKFEGDEVSIATPGGNKVY 150
>gi|332528408|ref|ZP_08404400.1| transcription elongation factor [Hylemonella gracilis ATCC 19624]
gi|332042087|gb|EGI78421.1| transcription elongation factor [Hylemonella gracilis ATCC 19624]
Length = 185
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL EERP++++ + A + GD SEN +Y K+ + R+
Sbjct: 27 KNYITPAGYARLRAELMQLIDEERPKVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRI 86
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV D S G D++ FGATV+ + +G ++ I+G EAD G VS
Sbjct: 87 RFLTKRLEIAEVADPSVHHGSDQVFFGATVTYAD-GAGVERTITILGIDEADNLRGQVSW 145
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+AR L+ +GD++ + P G + E+L+V +
Sbjct: 146 ISPVARTLLKARVGDVLKLVTPAGVEEIEVLEVSY 180
>gi|255536258|ref|YP_003096629.1| Transcription elongation factor GreA [Flavobacteriaceae bacterium
3519-10]
gi|255342454|gb|ACU08567.1| Transcription elongation factor GreA [Flavobacteriaceae bacterium
3519-10]
Length = 170
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 57/152 (37%), Positives = 102/152 (67%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT +G DK++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q + E ++++
Sbjct: 18 YVTKEGLDKMKAELEQLETIERPKITQQIAEARDKGDLSENAEYDAAKEAQGMLEMKISK 77
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+++I+ A+VID + + +++ TV L ++ ++ + +V D E+D++SG +S+++P
Sbjct: 78 IKDIVINAKVIDETQLDTSKVSILTTVRLKNNDTKAEQKFTLVPDNESDLKSGRISVNTP 137
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVL 156
IA+ L+GK +G+ + P G K ++E+L++
Sbjct: 138 IAKGLLGKTVGEKADIVLPNGNKLSFEVLEIS 169
>gi|262278089|ref|ZP_06055874.1| transcription elongation factor and transcript cleavage
[Acinetobacter calcoaceticus RUH2202]
gi|262258440|gb|EEY77173.1| transcription elongation factor and transcript cleavage
[Acinetobacter calcoaceticus RUH2202]
Length = 164
Score = 146 bits (369), Expect = 9e-34, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L +
Sbjct: 1 MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120
R+ L + ++ID S ++ FGA V + + G++K +IVG E D +
Sbjct: 61 RVRYLGKRLEELKIIDYSPEQAGKVYFGAWVEIENEE-GEQKTLRIVGIDEIYDHHPQHI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+GKE+ D I V+ P G+K + I + +
Sbjct: 120 SIESPMARALLGKEVDDEIEVHTPSGKKLWYINTIRY 156
>gi|88861075|ref|ZP_01135710.1| transcription elongation factor GreB [Pseudoalteromonas tunicata
D2]
gi|88817003|gb|EAR26823.1| transcription elongation factor GreB [Pseudoalteromonas tunicata
D2]
Length = 160
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 2/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + +T +G++K++QE + +E+RP + K ++ A + GD SENA+Y K L +
Sbjct: 1 MKTMLITFEGYNKLKQEHDYLWKEQRPEVTKIVTWAASLGDRSENADYTFNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
R+ L I+ +++ S ++ FGA V + + GD KN +IVG +E +
Sbjct: 61 RVRYLRKIMPDLKIVYYSPEQEGKVFFGAWVEIEN-DDGDIKNLRIVGPEEIYGDSKNYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+ SP+ARALI KE+ D + V P GEKT+ I ++ ++
Sbjct: 120 SVDSPMARALIKKEVDDEVIVKTPEGEKTWYINKITYV 157
>gi|239626631|ref|ZP_04669662.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516777|gb|EEQ56643.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 160
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKHILTYAGLKQYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ELE ++ AEV+ + D+I G V L++ ++ + IVG EA+
Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKLLDVEYDEEMEFYIVGSTEANSLQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ RALIGK +GD + V G+ Y++L++
Sbjct: 121 ISNESPVGRALIGKVVGDCVEVETQAGDIQYKVLEIQ 157
>gi|227550518|ref|ZP_03980567.1| elongation factor GreA [Enterococcus faecium TX1330]
gi|227180419|gb|EEI61391.1| elongation factor GreA [Enterococcus faecium TX1330]
Length = 198
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q
Sbjct: 40 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 99
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +EN+I A++ID + D ++ G TV+ +E G+++ Y IVG EAD SG
Sbjct: 100 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 159
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK D +++ PGG+ +I++V
Sbjct: 160 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKVE 196
>gi|257869644|ref|ZP_05649297.1| prokaryotic transcription elongation factor GreA [Enterococcus
gallinarum EG2]
gi|257803808|gb|EEV32630.1| prokaryotic transcription elongation factor GreA [Enterococcus
gallinarum EG2]
Length = 159
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 107/157 (68%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEQELEELKTVKRGEIIERIKVARSFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LEN+I AE+ID + D ++ G TV+ +E GD++ Y IVG EAD SG
Sbjct: 61 EGRITTLENMIRFAEIIDNEGVDNDEVSIGKTVTFIELPDGDEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIARALIGK++ D ++++ PGG+ +I +V
Sbjct: 121 ISNDSPIARALIGKKINDEVTISTPGGDMLVKITEVK 157
>gi|182420076|ref|ZP_02951310.1| transcription elongation factor GreA [Clostridium butyricum 5521]
gi|237669518|ref|ZP_04529498.1| transcription elongation factor GreA [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182376113|gb|EDT73700.1| transcription elongation factor GreA [Clostridium butyricum 5521]
gi|237654962|gb|EEP52522.1| transcription elongation factor GreA [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 161
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 88/154 (57%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EGR
Sbjct: 6 KQYVMTYEGVKKLENELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAFTEGR 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LEN++ A V+D S + D ++ G+ V + + ++ Y IVG EAD + +S
Sbjct: 66 IVTLENMLKNAVVVDESEIPKDVVSVGSKVKVKDYEFDEEVEYSIVGSAEADPMNFKISN 125
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ALIGK++G+I+ V P G +EIL +
Sbjct: 126 ESPVGSALIGKKIGEIVEVQIPDGVNKFEILGIS 159
>gi|110638033|ref|YP_678241.1| transcription elongation factor GreA [Cytophaga hutchinsonii ATCC
33406]
gi|110280714|gb|ABG58900.1| transcription elongation factor GreA [Cytophaga hutchinsonii ATCC
33406]
Length = 158
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 100/156 (64%), Gaps = 1/156 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M K+ T +G +K++ EL + + R +I I+EAR GDLSENAEY AAK+ Q L
Sbjct: 1 MSSKVSYYTEEGLNKLKNELSHLKTKGRSQIAAQIAEARDKGDLSENAEYDAAKDAQGLL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E ++++LE I++ A ++D ST+ + + V + K +G Y +V ++EAD+++G
Sbjct: 61 ELKISKLEEIVSNARLLDESTIDTSKASILTKVKIKNKKTGHIVEYTLVSEEEADLKAGR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S+ SPI +AL+G+E+G+ + V+ P G+ +EIL +
Sbjct: 121 ISLKSPIGKALLGREVGETVLVDVPAGKIEFEILDI 156
>gi|150026396|ref|YP_001297222.1| transcription elongation factor GreA [Flavobacterium psychrophilum
JIP02/86]
gi|166200662|sp|A6H247|GREA_FLAPJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|149772937|emb|CAL44421.1| Transcription elongation factor GreA [Flavobacterium psychrophilum
JIP02/86]
Length = 158
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 95/156 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M T++G K++ EL + ERP+ I+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MSTVSYYTAEGLKKLKDELEQLKAIERPKASADIAEARDKGDLSENAEYDAAKEAQGLLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E + + A +ID S + + + V + +++G + +Y +V + EAD+++G +
Sbjct: 61 LKIKKMEEVYSNARLIDESQLDVSKALVLSHVKIKNQSNGMEMSYHLVAESEADLKTGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S++SPI + L+GK +G+I + P G +E+L++
Sbjct: 121 SVTSPIGKGLLGKSVGEIAEITVPNGILKFEVLEIT 156
>gi|320324941|gb|EFW81013.1| transcription elongation factor GreB [Pseudomonas syringae pv.
glycinea str. B076]
Length = 157
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKI-ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ +
Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE GD + VN P GEK + + +++
Sbjct: 119 SIDSPMARALLKKEEGDEVLVNMPEGEKLWFVNSIVY 155
>gi|270308083|ref|YP_003330141.1| transcription elongation factor [Dehalococcoides sp. VS]
gi|270153975|gb|ACZ61813.1| transcription elongation factor [Dehalococcoides sp. VS]
Length = 265
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+KIP+T+ G+ K++ EL + +R +I+ + A D+ ENA Y AAKE + EG
Sbjct: 111 VEKIPMTASGYKKLEDELSTLKG-KRIEVIEEMRLAAMDKDMRENAPYHAAKEQRGQIEG 169
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E+ + AEV + + + ++ G TV L + +G+ Y +V +E + G +S
Sbjct: 170 RIKEIEHELKYAEVSEYTDNNTSKVNMGNTVKLRDLKNGECCTYTLVSPKEIEPLKGKIS 229
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SSPI +A+ + G+ I + P G Y I + +
Sbjct: 230 ASSPIGKAVFNRNKGEQIEIEVPSGTLQYIIEDISF 265
>gi|255318589|ref|ZP_05359822.1| transcription elongation factor GreB [Acinetobacter radioresistens
SK82]
gi|262378815|ref|ZP_06071972.1| transcription elongation factor GreB [Acinetobacter radioresistens
SH164]
gi|255304581|gb|EET83765.1| transcription elongation factor GreB [Acinetobacter radioresistens
SK82]
gi|262300100|gb|EEY88012.1| transcription elongation factor GreB [Acinetobacter radioresistens
SH164]
Length = 159
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G D++ EL+ EERP I K ++ A + GD SENA+YQ K+L +
Sbjct: 1 MKSNLITRAGHDRLVAELQQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLV 120
R+ L + ++D S R+ FGA V + G++K +IVG D+ D +
Sbjct: 61 RVRYLGKRLEELRIVDHSPEQDGRVYFGAWVDIEN-EYGEQKTLRIVGVDEIYDHHPQHI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ D I V P G+K + I + +
Sbjct: 120 SIDSPMARALLSKQVNDEIEVMTPSGKKQWYINAIRY 156
>gi|224537713|ref|ZP_03678252.1| hypothetical protein BACCELL_02595 [Bacteroides cellulosilyticus
DSM 14838]
gi|224520636|gb|EEF89741.1| hypothetical protein BACCELL_02595 [Bacteroides cellulosilyticus
DSM 14838]
Length = 154
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 58/152 (38%), Positives = 95/152 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ +
Sbjct: 3 YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ II A++ID S + D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 63 LKTIIADAKIIDESKLKTDSVQILNKVELKNIKNGMKMIYTIVSESEANLKEGKISVNTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++GD+ + P G E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGMVNLEVVNISF 154
>gi|291613395|ref|YP_003523552.1| transcription elongation factor GreB [Sideroxydans lithotrophicus
ES-1]
gi|291583507|gb|ADE11165.1| transcription elongation factor GreB [Sideroxydans lithotrophicus
ES-1]
Length = 186
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+ ++++E ERP +++ +S A + GD SEN +Y K+ + R+
Sbjct: 28 KNYITPEGYRRLKEEYMQLLDVERPALVQTVSWAASNGDRSENGDYIYGKKRLREIDRRL 87
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + ++VID + G +++ FGATV++ + G ++ Y IVG EA+ G +S
Sbjct: 88 RFLAKRLENSQVIDPAQRQGCEQVFFGATVTVCHSD-GTERTYSIVGIDEANASKGHISW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+AR L+ D + + P G + +++V +
Sbjct: 147 VSPLARTLLKARADDAVILQLPEGVEELVVIEVSY 181
>gi|89892964|ref|YP_516451.1| hypothetical protein DSY0218 [Desulfitobacterium hafniense Y51]
gi|219666231|ref|YP_002456666.1| transcription elongation factor GreA [Desulfitobacterium hafniense
DCB-2]
gi|89332412|dbj|BAE82007.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219536491|gb|ACL18230.1| transcription elongation factor GreA [Desulfitobacterium hafniense
DCB-2]
Length = 156
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T +G +++ EL + +R + + I +A +GD+SEN+EY AK Q
Sbjct: 1 MAEKEVILTIEGLKRLEDELETLKTVKRREVAERIKQAIEFGDISENSEYDDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A VID S + +A G TV L +K G+++ Y IVG EAD S
Sbjct: 61 EGRIITLEKMLRNARVIDDLEGS-EVVALGTTVILKDKEFGEEEEYTIVGSAEADPGSNK 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++G+ G ++ +N P G YEI+ +
Sbjct: 120 ISNESPVGKAVLGQPKGTVVEINVPAGILYYEIVDIR 156
>gi|291563891|emb|CBL42707.1| transcription elongation factor GreA [butyrate-producing bacterium
SS3/4]
Length = 160
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T G K + EL+ + R I + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKHILTYAGLKKYEDELQDLKVNRRREIAQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ELE ++ AEV+ ++ D+I G V + + + ++ +++VG EA+
Sbjct: 61 ELRIEELEKLLKNAEVVVEDEVNLDKINVGCIVKVYDVDFDEEMEFKLVGSTEANSLENK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ ALIGK +GD++ V G Y++L +
Sbjct: 121 ISNESPVGHALIGKRVGDVVDVETQSGVIQYKVLDIK 157
>gi|302388756|ref|YP_003824577.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM
16646]
gi|302199384|gb|ADL06954.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM
16646]
Length = 158
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 90/154 (58%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++ +T +G K+++EL + + +R + I +A ++GDLSEN+EY AK Q EG+
Sbjct: 4 KEVVLTQEGLRKLEKELEYLKSVKRKEVADRIKQAISFGDLSENSEYDEAKNEQAFVEGK 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A LE + A+VID + +S + + G+ V + + ++ + Y IV EA+ +S
Sbjct: 64 IAMLEEKLRNAKVIDDADISTETVTLGSKVLIRDLDTEEAIEYTIVSSAEANPIDFKISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+G + GD+I ++ P G+ Y + ++
Sbjct: 124 ESPVGKALMGAKKGDVIEISVPAGQVRYRVEEIK 157
>gi|325261221|ref|ZP_08127959.1| transcription elongation factor GreA [Clostridium sp. D5]
gi|324032675|gb|EGB93952.1| transcription elongation factor GreA [Clostridium sp. D5]
Length = 161
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 88/155 (56%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T G ++ EL + +R + I EAR GDLSENAEY AAK+ Q E
Sbjct: 4 AKKRLLTYAGLKSLEDELENLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEA 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+I+ AEV+ + D+I G V + + ++ +++IVG EA+ G +S
Sbjct: 64 RIEELESILKNAEVVVEDEVDFDKINVGCKVKVFDITYDEEMDFKIVGSTEANSLEGKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+G++ GD++ V G+ Y++L++
Sbjct: 124 NESPVGQALMGRKTGDLVEVETQAGQIQYKVLEIS 158
>gi|285017768|ref|YP_003375479.1| transcription elongation factor greb (transcript cleavage factor
greb) protein [Xanthomonas albilineans GPE PC73]
gi|283472986|emb|CBA15491.1| probable transcription elongation factor greb (transcript cleavage
factor greb) protein [Xanthomonas albilineans]
Length = 168
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 83/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G +++ EL + RP +++A++ A A GD SENAEY K+ + R+ L
Sbjct: 15 ITPEGHARLKAELDDLWRLRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ + + FGA ++L + +SG+ + Y+IVG E D G +SI SP+
Sbjct: 75 SKRLEALRVVADAPSDPQAVFFGARIALEDVDSGELRRYRIVGPDETDAARGWISIDSPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + D + PGG ++ ++ V +
Sbjct: 135 ARALLKKRIDDEVEAQLPGGRHSFVVVAVEY 165
>gi|308068951|ref|YP_003870556.1| transcription elongation factor greA (transcript cleavage factor
greA) [Paenibacillus polymyxa E681]
gi|305858230|gb|ADM70018.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Paenibacillus polymyxa E681]
Length = 159
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 94/154 (61%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+++ +T +G K++ EL+ + +R + + + A +YGDL EN+EY +AK+ Q E R
Sbjct: 4 EEVLLTKEGLAKLEDELKELKTVKRKELAERLKLAISYGDLKENSEYHSAKDDQAFMETR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LE ++T+A V+D S + ++ G+TV L + +K Y+IV EADV +S
Sbjct: 64 ILILEKMLTKARVVDESNLDLRTVSIGSTVILNDIEFSEKMEYKIVSPAEADVLDNKISY 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+GKE+G II V+AP YE+L++
Sbjct: 124 ESPLGKALLGKEVGSIIHVDAPMAVIKYELLEIK 157
>gi|291526253|emb|CBK91840.1| transcription elongation factor GreA [Eubacterium rectale DSM
17629]
gi|291526764|emb|CBK92350.1| transcription elongation factor GreA [Eubacterium rectale M104/1]
Length = 162
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 92/154 (59%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K +T G K++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R
Sbjct: 4 KKNILTYAGLKKLEDELEQLKVVKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+E I+ AEV+ + D+I+ G + +++ ++ Y+IVG EA+ G +S
Sbjct: 64 IEEIEKILKNAEVVVEEEVDLDKISIGCKIRILDCEFDEELEYKIVGSTEANSLKGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+GK++GD ++V GE TY++L++
Sbjct: 124 ESPVGKALLGKKVGDTVTVETQVGELTYKVLEIQ 157
>gi|325982789|ref|YP_004295191.1| transcription elongation factor GreB [Nitrosomonas sp. AL212]
gi|325532308|gb|ADZ27029.1| transcription elongation factor GreB [Nitrosomonas sp. AL212]
Length = 182
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 88/155 (56%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ E + +RP ++K I+ A + GD SEN +Y K+ + R+
Sbjct: 26 KNYITPDGYQRLRDEFDQLWKVDRPELVKTITWAASNGDRSENGDYIYGKKRLREIDRRL 85
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AE++D S ++ FGATV++ + +K+ Y IVG EA+ G +S
Sbjct: 86 RFLSRRLDSAEIVDPSQRGECHQVFFGATVTVCNAQN-EKQTYSIVGMDEAEPGCGRISW 144
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A+AL+ GD+++++ PGG + E+++V +
Sbjct: 145 ISPLAKALLKAHEGDVVTLHTPGGVEELEVIEVHY 179
>gi|27365048|ref|NP_760576.1| transcription elongation factor GreA [Vibrio vulnificus CMCP6]
gi|320155431|ref|YP_004187810.1| transcription elongation factor GreA [Vibrio vulnificus MO6-24/O]
gi|31076695|sp|Q8DBW9|GREA_VIBVU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|27361194|gb|AAO10103.1| Transcription elongation factor GreA [Vibrio vulnificus CMCP6]
gi|319930743|gb|ADV85607.1| transcription elongation factor GreA [Vibrio vulnificus MO6-24/O]
Length = 157
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 70/157 (44%), Positives = 115/157 (73%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G +++ ++ R + RP I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTARG-EQLLRKELERLLKRRPLITEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID+S M + ++ FGATV+L++ ++ ++K YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVSKMENNGKVIFGATVTLIDCDTEEEKTYQIVGDDEADIKSGRI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S++SPIAR LIGK GD ++++ PGG K +EI V +
Sbjct: 120 SVNSPIARGLIGKMEGDEVAISTPGGMKDFEIDSVEY 156
>gi|116623798|ref|YP_825954.1| transcription elongation factor GreB [Candidatus Solibacter
usitatus Ellin6076]
gi|116226960|gb|ABJ85669.1| transcription elongation factor GreB [Candidatus Solibacter
usitatus Ellin6076]
Length = 227
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 5/158 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G ++++E R+ ERP + K ++ A + GD SENA+YQ K +GR+
Sbjct: 44 KNYITPDGLQRLKEEHRFLLTRERPAVTKVVAWAASNGDRSENADYQYGKRRLRQIDGRI 103
Query: 64 AELENIITRAEVIDI----STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
L I AEV+D + + R FGATV +G ++ IVG E D+
Sbjct: 104 RFLTKRIDAAEVVDPERPRAGQAATRAFFGATVHYANA-AGTERVVSIVGTDEVDLNRNH 162
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S SP+ RAL+ GD + + APGG + +L+V +
Sbjct: 163 ISWVSPLGRALMKSAAGDRVVLQAPGGTEHLVVLKVCY 200
>gi|315652680|ref|ZP_07905655.1| transcription elongation factor GreA [Eubacterium saburreum DSM
3986]
gi|315485058|gb|EFU75465.1| transcription elongation factor GreA [Eubacterium saburreum DSM
3986]
Length = 160
Score = 145 bits (367), Expect = 1e-33, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T +G +++EL+ + +R I I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MAEKKHILTYEGLKNLEEELQDLKVNKRKEIAGKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ +LE ++ AEV+ + D I G V +++K+ ++ +++IVG EAD +G
Sbjct: 61 EARIEQLEALLKNAEVVVEDEVDLDTIGIGCKVKILDKDFDEELDFKIVGSTEADSLAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +AL+GK++G+ V G Y +L++
Sbjct: 121 ISNESPLGKALLGKKIGETAEVETQAGVSEYMVLEIQ 157
>gi|189502128|ref|YP_001957845.1| hypothetical protein Aasi_0733 [Candidatus Amoebophilus asiaticus
5a2]
gi|238692311|sp|B3ESB4|GREA_AMOA5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189497569|gb|ACE06116.1| hypothetical protein Aasi_0733 [Candidatus Amoebophilus asiaticus
5a2]
Length = 157
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 2 VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++K+ T +G +++ EL + E R ++ + +SEAR GDLSENAEY AAKE Q + E
Sbjct: 1 MEKVSYYTEEGLQRLKGELTQLKSEGRAKVAEQLSEARDKGDLSENAEYDAAKEAQEILE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE ++ A VI+ ++ ++ + V + K G Y +V ++EAD++ G +
Sbjct: 61 RRIAKLEELMINARVINKDNINTSAVSILSKVKIKNKKLGKVSTYTMVSEEEADLKEGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SPI + L+GK+ G++ V AP G+ +EIL + +
Sbjct: 121 SIESPIGKGLLGKKAGEVAIVEAPAGKIEFEILDISF 157
>gi|56459393|ref|YP_154674.1| GreB [Idiomarina loihiensis L2TR]
gi|56178403|gb|AAV81125.1| GreB [Idiomarina loihiensis L2TR]
Length = 159
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G++K+QQEL + ER ++ +S A + GD SENA+Y+ K+ +G
Sbjct: 1 MKTNLITLGGYEKLQQELEHLWRVERRETVEKVSWAASLGDRSENADYKYNKQKLRKIDG 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + +V+ S ++ FGA V + ++ + +QIVG E + VS
Sbjct: 61 RIRYLTKRLEQVKVVYYSPQQDGKVFFGAWVEIEDEEEN-VRAFQIVGPDEIYDRKDAVS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ K++ D V G +T+ I ++ +
Sbjct: 120 IDSPMARALLKKQVDDEAEVTTQQGTRTWFINKISY 155
>gi|289449476|ref|YP_003475259.1| transcription elongation factor GreA [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184023|gb|ADC90448.1| transcription elongation factor GreA [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 160
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 97/154 (62%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V++I +T +GF+ +++EL R+ R + + I A ++GDLSEN+EY AK+ Q NEG
Sbjct: 4 VEQIEMTLEGFNHLKEELEHRKIVVRSEVAERIKVALSFGDLSENSEYDDAKQAQAENEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E I+ + VID +S + G+ L ++ +G++ Y IVG +E ++ +S
Sbjct: 64 RIMEIEAILKKVRVIDNDEISKTNVTLGSAFVLRDEATGEETQYTIVGAKEENIFENKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ + ++GK+ G +ISV AP G+ Y+I+++
Sbjct: 124 SDSPVGQQVLGKKKGSVISVKAPIGQLKYKIVKI 157
>gi|229829708|ref|ZP_04455777.1| hypothetical protein GCWU000342_01805 [Shuttleworthia satelles DSM
14600]
gi|229791697|gb|EEP27811.1| hypothetical protein GCWU000342_01805 [Shuttleworthia satelles DSM
14600]
Length = 160
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T +G K++ EL + +R + I+EAR GDLSENAEY+AAKE Q E
Sbjct: 4 AKKNLMTYEGLQKLEAELEDLKTNKRKANSRDIAEAREQGDLSENAEYEAAKEEQRQIEN 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+ I+ AE+ D + + G+TV+L++ ++ Y+IVG E + G +S
Sbjct: 64 RINEITKILKNAEIAD-DIVDKSIVNIGSTVTLLDLEYDEELTYKIVGSTEVNSLGGKIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ A++ + G+ ++V G Y+IL +
Sbjct: 123 NESPVGAAILHHKAGETVTVETEAGSFKYKILSISH 158
>gi|189465343|ref|ZP_03014128.1| hypothetical protein BACINT_01691 [Bacteroides intestinalis DSM
17393]
gi|189437617|gb|EDV06602.1| hypothetical protein BACINT_01691 [Bacteroides intestinalis DSM
17393]
Length = 154
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 57/152 (37%), Positives = 94/152 (61%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ G+ K+ EL+ + ERP+I AI+EAR GDLSENAEY AAKE Q + E ++ +
Sbjct: 3 YMSEDGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ II A++ID S + D + V L +G K Y IV + EA+++ G +S+++P
Sbjct: 63 LKTIIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++G++ + P G E++ + +
Sbjct: 123 IAQGLLGKKVGEVAEIKVPQGMVNLEVMNISF 154
>gi|150392207|ref|YP_001322256.1| transcription elongation factor GreA [Alkaliphilus metalliredigens
QYMF]
gi|149952069|gb|ABR50597.1| transcription elongation factor GreA [Alkaliphilus metalliredigens
QYMF]
Length = 158
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T++G KI+ +L + R + I +A A+GDLSEN+EY AK Q
Sbjct: 1 MTEKEVLLTAQGLKKIEDDLEQLKTVRRREVAGRIKQAIAFGDLSENSEYDEAKNEQAQV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A+LEN++ +A VID S +S D ++ G TV + + + Y IVG EAD
Sbjct: 61 EERIAKLENMLRKARVIDESEISSDVVSIGTTVEVKDLEYDEIVEYTIVGSAEADPYELR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ R L+G+++G+++ + P G Y++L++
Sbjct: 121 ISNESPVGRTLLGRKVGEVVDIQIPDGVTQYKVLKIT 157
>gi|153005528|ref|YP_001379853.1| transcription elongation factor GreB [Anaeromyxobacter sp. Fw109-5]
gi|152029101|gb|ABS26869.1| transcription elongation factor GreB [Anaeromyxobacter sp. Fw109-5]
Length = 169
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +GF ++ E +RP+I+ + A A GD SENAEY K+ +
Sbjct: 8 MTKPRYITPEGFRRLASEHERIWSVDRPKIVAEVEAAAALGDRSENAEYVYGKKKLRELD 67
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V+D R FGA V++ + + G+ + +++VG E DV +GL+
Sbjct: 68 RRLRFLSERMDALTVVDPRPHPHGRAFFGAWVTIED-DEGEARTFRLVGPDEFDVAAGLI 126
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+ +P+ RAL+GK+ GD + P GE I+ V W
Sbjct: 127 SVEAPLGRALLGKQEGDTVLFLRPAGEAELTIMAVRW 163
>gi|254461545|ref|ZP_05074961.1| transcription elongation factor GreA [Rhodobacterales bacterium
HTCC2083]
gi|206678134|gb|EDZ42621.1| transcription elongation factor GreA [Rhodobacteraceae bacterium
HTCC2083]
Length = 151
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 76/152 (50%), Positives = 114/152 (75%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++ EL+ + ERP II AI+EAR +GDLSENAEY +A+E + EGR+ L
Sbjct: 1 MTKSGHTAVEVELKNLKTVERPAIIAAIAEAREHGDLSENAEYHSAREKHSFIEGRVKLL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I++ A VID +T++G I FGAT++LV++++ ++K +QIVG+ EA+V++GL++I SPI
Sbjct: 61 EGILSLAAVIDPATLNG-TIKFGATITLVDEDTDEEKTWQIVGEHEANVEAGLLNIKSPI 119
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARALIGK+ GD + V PGG K+YE+L++ +I
Sbjct: 120 ARALIGKDEGDSVEVRTPGGSKSYEVLKIEFI 151
>gi|302878073|ref|YP_003846637.1| transcription elongation factor GreB [Gallionella capsiferriformans
ES-2]
gi|302580862|gb|ADL54873.1| transcription elongation factor GreB [Gallionella capsiferriformans
ES-2]
Length = 178
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G K+Q EL + ERP ++ I+ A + GD SEN +Y K + R+
Sbjct: 21 KNYITPGGHQKLQTELEQLWKVERPVLVNTITWAASNGDRSENGDYIYGKRRLREIDRRV 80
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + +AEV+D + + +++ FGATV++ ++ G + Y IVG EAD+ G +S
Sbjct: 81 RFLHKRLEQAEVVDPAKRGACEQVFFGATVTVGHED-GSEATYAIVGVDEADLTRGHISW 139
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR L+ GD+ + P G E+L+V ++
Sbjct: 140 VSPLARTLLKLHEGDVARLMTPAGIVELEVLRVCYL 175
>gi|116515169|ref|YP_802798.1| hypothetical protein BCc_237 [Buchnera aphidicola str. Cc (Cinara
cedri)]
gi|122285435|sp|Q057J4|GREA_BUCCC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116257023|gb|ABJ90705.1| transcription elongation factor [Buchnera aphidicola str. Cc
(Cinara cedri)]
Length = 159
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 70/159 (44%), Positives = 108/159 (67%), Gaps = 1/159 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +KIP+T +GF+K++ EL+ + RP I+KAI+ AR GDL ENAEY +A+E Q+ E
Sbjct: 1 MFNKIPMTLRGFNKLKSELKKLKYITRPCIVKAIANARQLGDLKENAEYHSAREEQSFCE 60
Query: 61 GRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ E+EN + RA++IDI+ + + FG+TV++++ ++ + Y IVGD EA+ +
Sbjct: 61 NRICEIENKLLRAQIIDITKIPFKGIVIFGSTVTVLQISTSNIFVYTIVGDDEANYKEFS 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+SI SP++RALIGK+ DII VN P G Y I ++ +I
Sbjct: 121 ISIHSPMSRALIGKKKNDIIKVNTPTGYIKYIIKKIEYI 159
>gi|28378269|ref|NP_785161.1| transcription elongation factor GreA [Lactobacillus plantarum
WCFS1]
gi|254556476|ref|YP_003062893.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1]
gi|300767199|ref|ZP_07077111.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308180418|ref|YP_003924546.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|38257515|sp|Q88WQ9|GREA2_LACPL RecName: Full=Transcription elongation factor greA 2; AltName:
Full=Transcript cleavage factor greA 2
gi|28271104|emb|CAD64009.1| transcription elongation factor GreA [Lactobacillus plantarum
WCFS1]
gi|254045403|gb|ACT62196.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1]
gi|300495018|gb|EFK30174.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308045909|gb|ADN98452.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 160
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 59/152 (38%), Positives = 93/152 (61%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K+++EL + +RP II I AR+YGDLSEN+EY++AK Q+L E R+
Sbjct: 7 YPMTEEGKVKLEKELEDLRINQRPEIINRIKIARSYGDLSENSEYESAKNEQSLLENRIK 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+E+++ AE+ID + ++ G V+ E + ++Y IVG EAD G +S S
Sbjct: 67 TVEHMLQYAEIIDSDKIDETEVSVGKIVTFKELPDEEPESYTIVGAAEADPMVGKISNDS 126
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PIA+ LIG + + +++N P G T +IL+V
Sbjct: 127 PIAKGLIGHHVDEEVAINIPAGTMTVKILKVE 158
>gi|304440038|ref|ZP_07399931.1| transcription elongation factor GreA [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371530|gb|EFM25143.1| transcription elongation factor GreA [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 164
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 88/156 (56%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E
Sbjct: 8 MEKDIFFTPEGLEKIENEIEFLKTVRRKEVAERIKIALGYGDLSENSEYDEAKNEQAQVE 67
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +LEN++ A VI+ ++ + + G+TVS+ + NS + Y IVG E+ G +
Sbjct: 68 ERIVKLENMVRNAVVIESDDLNTEIVNIGSTVSVKDINSDKESTYTIVGSAESSPLEGKI 127
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ LIGK++GD++ + P G T EI+ +
Sbjct: 128 SNESPVGSGLIGKKIGDVVDIEVPKGTITLEIMNIS 163
>gi|291541638|emb|CBL14748.1| transcription elongation factor GreA [Ruminococcus bromii L2-63]
Length = 160
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 92/157 (58%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+T++G +++EL + +R I + I AR+YGDLSEN+EY AK Q + E
Sbjct: 3 AKPTMLTAEGLKNLEEELAELKNVKRKEIAEKIKVARSYGDLSENSEYDDAKNEQAIMEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV--GDQEADVQSGL 119
R+A +E+I+ A++ID S S D++ + V++ + + Y+IV G E + G
Sbjct: 63 RIATIESILKTAQIIDESETSNDKVHLTSVVTIEMVGTDRQMTYKIVGSGSNETNPAQGK 122
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +AL+ + +GD++ V PGG K ++IL++
Sbjct: 123 ISDESPVGKALMDRCVGDVVEVETPGGVKAFKILEIS 159
>gi|29377378|ref|NP_816532.1| transcription elongation factor GreA [Enterococcus faecalis V583]
gi|255970856|ref|ZP_05421442.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis T1]
gi|255974431|ref|ZP_05425017.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis T2]
gi|256618301|ref|ZP_05475147.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis ATCC 4200]
gi|256761231|ref|ZP_05501811.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis T3]
gi|256852494|ref|ZP_05557870.1| transcription elongation factor GreA [Enterococcus faecalis T8]
gi|256958150|ref|ZP_05562321.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis DS5]
gi|256960296|ref|ZP_05564467.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis Merz96]
gi|256962732|ref|ZP_05566903.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis HIP11704]
gi|257077423|ref|ZP_05571784.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis JH1]
gi|257080712|ref|ZP_05575073.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis E1Sol]
gi|257083386|ref|ZP_05577747.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis Fly1]
gi|257088056|ref|ZP_05582417.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis D6]
gi|257091135|ref|ZP_05585496.1| prokaryotic transcription elongation factor greA [Enterococcus
faecalis CH188]
gi|257417082|ref|ZP_05594076.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis AR01/DG]
gi|257417796|ref|ZP_05594790.1| transcription elongation factor greA [Enterococcus faecalis T11]
gi|257420586|ref|ZP_05597576.1| transcription elongation factor greA [Enterococcus faecalis X98]
gi|294779657|ref|ZP_06745048.1| transcription elongation factor GreA [Enterococcus faecalis PC1.1]
gi|300860921|ref|ZP_07107008.1| transcription elongation factor GreA [Enterococcus faecalis TUSoD
Ef11]
gi|29344845|gb|AAO82602.1| transcription elongation factor GreA [Enterococcus faecalis V583]
gi|255961874|gb|EET94350.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis T1]
gi|255967303|gb|EET97925.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis T2]
gi|256597828|gb|EEU17004.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis ATCC 4200]
gi|256682482|gb|EEU22177.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis T3]
gi|256712348|gb|EEU27380.1| transcription elongation factor GreA [Enterococcus faecalis T8]
gi|256948646|gb|EEU65278.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis DS5]
gi|256950792|gb|EEU67424.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis Merz96]
gi|256953228|gb|EEU69860.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis HIP11704]
gi|256985453|gb|EEU72755.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis JH1]
gi|256988742|gb|EEU76044.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis E1Sol]
gi|256991416|gb|EEU78718.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis Fly1]
gi|256996086|gb|EEU83388.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis D6]
gi|256999947|gb|EEU86467.1| prokaryotic transcription elongation factor greA [Enterococcus
faecalis CH188]
gi|257158910|gb|EEU88870.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecalis ARO1/DG]
gi|257159624|gb|EEU89584.1| transcription elongation factor greA [Enterococcus faecalis T11]
gi|257162410|gb|EEU92370.1| transcription elongation factor greA [Enterococcus faecalis X98]
gi|294453314|gb|EFG21725.1| transcription elongation factor GreA [Enterococcus faecalis PC1.1]
gi|295114290|emb|CBL32927.1| transcription elongation factor GreA [Enterococcus sp. 7L76]
gi|300849960|gb|EFK77710.1| transcription elongation factor GreA [Enterococcus faecalis TUSoD
Ef11]
gi|323478879|gb|ADX78318.1| transcription elongation factor greA [Enterococcus faecalis 62]
Length = 159
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 71/157 (45%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K++QEL + +R I++ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LEN+I AE+ID + D ++ G TV+ E G+++ Y IVG EAD SG
Sbjct: 61 EGRITTLENMIRFAEIIDNDGVDQDEVSIGKTVTFQELPDGEEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK+LGD + + PGG+ T +I +V
Sbjct: 121 ISNDSPIAQALIGKQLGDQVIIATPGGDMTVKITKVE 157
>gi|299769038|ref|YP_003731064.1| transcription elongation factor GreB [Acinetobacter sp. DR1]
gi|298699126|gb|ADI89691.1| transcription elongation factor GreB [Acinetobacter sp. DR1]
Length = 164
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L +
Sbjct: 1 MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120
R+ L + ++ID + ++ FGA V + + G++K +IVG E D +
Sbjct: 61 RVRYLGKRLEELKIIDYAPEQDGKVYFGAWVEIENEE-GEQKTLRIVGIDEIYDHHPQHI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+GKE+ D I V+ P G+K + I + +
Sbjct: 120 SIESPMARALLGKEVDDEIEVHTPSGKKLWYINTIRY 156
>gi|291520199|emb|CBK75420.1| transcription elongation factor GreA [Butyrivibrio fibrisolvens
16/4]
Length = 159
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T++G ++ EL + +R + + I EAR GDLSENAEY AAK+ Q E
Sbjct: 3 AKKNLLTAEGLRVLEDELEDLKVNKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E I+ AEV+ I G TV+L++ ++ Y+IVG EA+ G +S
Sbjct: 63 RIEEIEKILKNAEVV-TDEHDTKNINIGWTVTLLDVEFDEEVEYKIVGSTEANSLKGKIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
SP+ +A++G + GD ++V GE Y+IL
Sbjct: 122 NESPVGKAILGHKKGDTVTVETEAGEFQYKILA 154
>gi|294788550|ref|ZP_06753792.1| transcription elongation factor GreB [Simonsiella muelleri ATCC
29453]
gi|294483427|gb|EFG31112.1| transcription elongation factor GreB [Simonsiella muelleri ATCC
29453]
Length = 162
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 1/159 (0%)
Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M D K +T +G +QQEL +ERP I++ ++ A + GD SEN +Y K
Sbjct: 1 MSDVKYYMTPQGHQTLQQELYQLVHKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ R+ L + A VID T F + +E+++G ++ +IVG+ E D
Sbjct: 61 DRRIRFLTKRLENALVIDPETREFTDQIFFSATVTIERSNGVEQTVKIVGEDEIDATKNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S SP+ARALI GD + +N P G + +IL V +I
Sbjct: 121 ISWKSPLARALIKAREGDRVWLNVPNGREAIDILVVEYI 159
>gi|218259539|ref|ZP_03475246.1| hypothetical protein PRABACTJOHN_00904 [Parabacteroides johnsonii
DSM 18315]
gi|218225022|gb|EEC97672.1| hypothetical protein PRABACTJOHN_00904 [Parabacteroides johnsonii
DSM 18315]
Length = 156
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 57/151 (37%), Positives = 94/151 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+DKI E+ + + +RP I I+EAR GDLSENAEY AAKE Q + E ++A+
Sbjct: 5 YMTKDGYDKILAEINYLETVKRPEISAQIAEARDKGDLSENAEYDAAKEAQGIMEAKLAQ 64
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I+ A +ID S + D + V + + Y +V D EA+++ G +++S+P
Sbjct: 65 LKGLISNARLIDESRVQTDEVQILNKVKIKNTKNNAVMTYTLVSDSEANLKEGKIAVSTP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+GK++GDI+ + P G ++EI+ +
Sbjct: 125 IAQGLMGKKVGDIVEIKVPSGMMSFEIMDIS 155
>gi|15676587|ref|NP_273731.1| transcription elongation factor GreB [Neisseria meningitidis MC58]
gi|34222642|sp|Q9K0C5|GREB_NEIMB RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|7225917|gb|AAF41107.1| transcription elongation factor GreB [Neisseria meningitidis MC58]
gi|316983663|gb|EFV62644.1| transcription elongation factor GreB [Neisseria meningitidis
H44/76]
gi|325139932|gb|EGC62462.1| transcription elongation factor GreB [Neisseria meningitidis CU385]
gi|325200625|gb|ADY96080.1| transcription elongation factor GreB [Neisseria meningitidis
H44/76]
Length = 163
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+
Sbjct: 6 KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D + D++ FGATV L+ ++ G ++ +IVG E D +S
Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RDDGREQTVKIVGIDEIDTAQNKISW 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LI GD + +N P G + EIL V +I
Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|302327915|gb|ADL27116.1| transcription elongation factor GreA [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 155
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 61/154 (39%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++KI T + +DK+ ++L + ERPR+++ + +ARA GDLSENAEY AAKE +
Sbjct: 1 MEKIMFTQEAYDKLVKDLENLKNVERPRVLQELVDARAQGDLSENAEYHAAKERLASIDN 60
Query: 62 -RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
M +L++ + RA+VI S D I FGAT++ + + YQ+V +EAD +G +
Sbjct: 61 IEMPKLQDQLARAQVIAFDANS-DTIKFGATITAKNLKTKREIVYQLVSPEEADALNGKI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
S SPI AL+GK+ GD + V P G+ +EI+
Sbjct: 120 SFKSPIGAALMGKKRGDTVEVVTPKGKNQFEIID 153
>gi|257440517|ref|ZP_05616272.1| transcription elongation factor GreA [Faecalibacterium prausnitzii
A2-165]
gi|257197021|gb|EEU95305.1| transcription elongation factor GreA [Faecalibacterium prausnitzii
A2-165]
Length = 161
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +++ G +Q EL + + R + + I EAR++GDLSEN+EY AK Q L E
Sbjct: 1 MAQEIKMSASGLKAMQDELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE ++ A +ID S +S D +A G VS+ + + Y IVG EAD +G +
Sbjct: 61 NRITELEQMVKNAVIIDESELSVDSVAVGTHVSIKMIGDDEAEEYDIVGRTEADPINGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
S SP+ AL+GK +G+ V P G+ YE+L +
Sbjct: 121 SDESPVGHALLGKAVGEKAEVLLPSGQIVEYEVLAITH 158
>gi|331083388|ref|ZP_08332500.1| transcription elongation factor greA [Lachnospiraceae bacterium
6_1_63FAA]
gi|330404081|gb|EGG83629.1| transcription elongation factor greA [Lachnospiraceae bacterium
6_1_63FAA]
Length = 160
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 87/154 (56%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K +T G K+++EL + +R + + I EAR GDLSENAEY AAK+ Q E R
Sbjct: 4 KKTLLTYAGLTKLEEELHDLKVNKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+E I+ AEV+ + D+I+ G V + + ++ ++IVG EA+ G +S
Sbjct: 64 IEEIEKILKNAEVVVEDEVDLDKISVGCKVKVYDVEFEEEMEFKIVGSTEANSLEGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +ALIG GD +SV P G Y+IL +
Sbjct: 124 ESPVGKALIGARKGDTVSVEMPAGVMEYKILGIE 157
>gi|51891618|ref|YP_074309.1| transcription elongation factor [Symbiobacterium thermophilum IAM
14863]
gi|51855307|dbj|BAD39465.1| transcription elongation factor [Symbiobacterium thermophilum IAM
14863]
Length = 160
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 2/154 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ ++ +G ++Q+EL + + +R + + + EAR+YGDLSEN+EY A+ Q EGR+A
Sbjct: 7 VVLSPEGLQQLQEELDYLRNVKRKEVAERLKEARSYGDLSENSEYDDARNEQAFVEGRIA 66
Query: 65 ELENIITRAEVIDISTM--SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
LEN + A ++D S +I G+TV L + GD Y IVG EAD +S
Sbjct: 67 MLENTLRNAVIMDESEDEAEAGKIRLGSTVVLKDLEYGDLLEYTIVGTVEADPAKNKISN 126
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +A++G+ G+++ V AP G YEI+ V
Sbjct: 127 ESPVGKAIMGRTKGEVVVVEAPAGRIEYEIVDVK 160
>gi|254786831|ref|YP_003074260.1| transcription elongation factor GreB [Teredinibacter turnerae
T7901]
gi|237686835|gb|ACR14099.1| transcription elongation factor GreB [Teredinibacter turnerae
T7901]
Length = 172
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G K++ EL + + ERP + K ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 22 ITEEGLTKLKSELDYLWRTERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYL 81
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
I +V+ + + FG+ V + +G+ K +IVG E + +SI SP+
Sbjct: 82 RKRIDSLKVVRYAKEQEGSVYFGSWVKIEN-EAGENKELRIVGYDEIFGEKNYISIDSPM 140
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+AL+ K++GD V GE +EI+++ +
Sbjct: 141 AKALLRKKVGDEAIVKTEVGEFCWEIMEISY 171
>gi|332528000|ref|ZP_08404034.1| transcription elongation factor GreB [Rubrivivax benzoatilyticus
JA2]
gi|332112574|gb|EGJ12367.1| transcription elongation factor GreB [Rubrivivax benzoatilyticus
JA2]
Length = 193
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G+ +++EL ERP+I++ +S A GD SEN +Y K+ + R+
Sbjct: 32 YMTPQGWRMLREELMTLLDVERPKIVETVSWAAKNGDRSENGDYLYGKKRLREIDRRIRF 91
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + AEV D S G D++ FGATV+ G+++ I G EAD G VS +
Sbjct: 92 LTKRLDIAEVADPSAHHGSDQVFFGATVTYANAK-GEERTITIKGIDEADNLKGEVSWVA 150
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
PIARAL+ GD + + PGG +T E+++V +
Sbjct: 151 PIARALLKSREGDEVQLMTPGGLETIEVVEVRY 183
>gi|169830348|ref|YP_001716330.1| transcription elongation factor GreA [Candidatus Desulforudis
audaxviator MP104C]
gi|169637192|gb|ACA58698.1| transcription elongation factor GreA [Candidatus Desulforudis
audaxviator MP104C]
Length = 163
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 90/150 (60%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G K+++EL + + +R + + I +A +GD+++++EY+ AK Q EGR+ L
Sbjct: 10 LTVAGLRKLERELEYLKMVKRREVAERIKQAIEFGDITDSSEYEDAKNEQAFIEGRIITL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + A+VID + + + G+TV L + N G++ Y IVG E+D +S +S SP+
Sbjct: 70 EKALRNAKVIDAEDVGTEEVGIGSTVRLKDLNGGEELQYTIVGSMESDPRSNKISDESPV 129
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
RA++G+ +G+I+ + P G Y+I+ +
Sbjct: 130 GRAMLGQRVGNIVEIQVPAGTLKYQIIDIT 159
>gi|149177265|ref|ZP_01855871.1| transcription elongation factor greA [Planctomyces maris DSM 8797]
gi|148843979|gb|EDL58336.1| transcription elongation factor greA [Planctomyces maris DSM 8797]
Length = 158
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 94/157 (59%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D+ P+T +G+DK+++E+R + + P I + I++ARA GDL EN EY A +E Q + +
Sbjct: 1 MDRHPITQEGYDKLREEIRHLESDVMPEIAEKIADARAEGDLKENTEYHAQREAQGMTQA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ +L++ + + D STM + FG+ V++ + G + Y+ VG E D ++
Sbjct: 61 KINQLKSKLANCYIADKSTMPKGVVTFGSIVTVKNLDDGLDEKYEFVGPGEEDYLGEVMK 120
Query: 122 I--SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
I SSP+A L+ K++GD + V P G +E++Q+
Sbjct: 121 ILTSSPLAEGLLNKKVGDKVEVEVPSGTLKFEVIQIE 157
>gi|291295486|ref|YP_003506884.1| transcription elongation factor GreA [Meiothermus ruber DSM 1279]
gi|290470445|gb|ADD27864.1| transcription elongation factor GreA [Meiothermus ruber DSM 1279]
Length = 159
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 56/159 (35%), Positives = 98/159 (61%), Gaps = 3/159 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M DK + +T++G +++QEL + + E+ +I + + A A GDL ENA Y A+
Sbjct: 1 MADKKPVYLTAEGKARLEQELAYLKTEKMQQIAEEMGRAIAEGDLRENAGYDEARRAMWQ 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
N R+AELE+I++R ++++ + G TV+L E +G + + +VG EADV SG
Sbjct: 61 NNSRIAELEDILSRVQIVESGNGIPTEVQIGVTVAL-ETATGQRMSVTMVGSHEADVFSG 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S SP+ +AL+GK++GD + V P G +TY ++++++
Sbjct: 120 KISNESPLGQALMGKKVGDEVQVKGPKGSQTYVVVELVY 158
>gi|126664880|ref|ZP_01735864.1| Transcription elongation factor [Marinobacter sp. ELB17]
gi|126631206|gb|EBA01820.1| Transcription elongation factor [Marinobacter sp. ELB17]
Length = 153
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 60/142 (42%), Positives = 101/142 (71%), Gaps = 1/142 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G +++ EL+ + E+RPR+I +I+ AR +GDL ENAEY AA++ Q+ EGR+ E+
Sbjct: 1 MTTLGEARLRAELQKLKSEDRPRVIASIATAREHGDLKENAEYHAARDQQSFIEGRIQEI 60
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E + A+VID++T+ + ++ FG TV L+ ++ + YQIVG+ EAD++ G +S+SSP
Sbjct: 61 EGKLGGAQVIDVTTIENTGKVIFGTTVHLLNTDTDKQVVYQIVGEDEADIKDGKISVSSP 120
Query: 126 IARALIGKELGDIISVNAPGGE 147
IARAL+G+ G+++++ P G
Sbjct: 121 IARALVGRRAGEVVAIRVPSGT 142
>gi|325955129|ref|YP_004238789.1| transcription elongation factor GreA [Weeksella virosa DSM 16922]
gi|323437747|gb|ADX68211.1| transcription elongation factor GreA [Weeksella virosa DSM 16922]
Length = 159
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + VT +G +K++ EL + ERP+I + I+EAR GDLSENAEY AAKE Q + E
Sbjct: 1 MANIQYVTKEGLEKLRAELHELETYERPKISQQIAEARDKGDLSENAEYDAAKEAQGMLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+++L+ I A +ID S + +I+ +TV + + S + +Y +V + EAD++ +
Sbjct: 61 MRISKLQESIANARLIDESKLDATKISILSTVRIRNQVSKQELSYTLVPETEADLKKARI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
S+++PIA+ L+GK +GDI + P G T+E+L +
Sbjct: 121 SVNTPIAKGLLGKSVGDIAEIELPNGQTLTFEVLSIS 157
>gi|312131392|ref|YP_003998732.1| transcription elongation factor grea [Leadbetterella byssophila DSM
17132]
gi|311907938|gb|ADQ18379.1| transcription elongation factor GreA [Leadbetterella byssophila DSM
17132]
Length = 156
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 95/155 (61%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ T +G+D ++ +L + + R + KA++EA+ GDLSENAEY AAK+ Q L E
Sbjct: 1 MSYQYYTQEGYDNLKNKLNDLKTKGRREVSKALAEAKDKGDLSENAEYDAAKDAQALLET 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+A+LE + +A ++D +T+ +++ TV + + Y +V ++EAD++ G +S
Sbjct: 61 EIAKLEELFAKARILDENTIDTSKVSLMTTVKIKNLKNKATMKYTLVAEEEADLKQGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
I+SP A+ L+GK++GD + APGG EIL++
Sbjct: 121 INSPFAKGLLGKKVGDKADIQAPGGVVEVEILEIT 155
>gi|238917593|ref|YP_002931110.1| transcription elongation factor GreA [Eubacterium eligens ATCC
27750]
gi|238872953|gb|ACR72663.1| transcription elongation factor GreA [Eubacterium eligens ATCC
27750]
Length = 158
Score = 144 bits (365), Expect = 2e-33, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 84/156 (53%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K +T KG+D+ L + R + + + EAR GDLSENAEY AAK+ Q E
Sbjct: 1 MAEKQFLTKKGYDERVARLEELKVVRRKEVAQKLKEAREQGDLSENAEYDAAKDEQRDIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+AELE I+ EVI + + D + + V L + + Y IVG EAD + +
Sbjct: 61 TEIAELEAILANCEVIQDNDKNKDVVKMESVVVLHDVEIDEDIEYTIVGSSEADSLNNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ ALIGK+ GD + V AP GE Y ++ V
Sbjct: 121 SNESPLGAALIGKKKGDTVKVEAPVGEIEYTVVSVK 156
>gi|56551614|ref|YP_162453.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241761261|ref|ZP_04759349.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|260752794|ref|YP_003225687.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
gi|56543188|gb|AAV89342.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
mobilis ZM4]
gi|241374168|gb|EER63665.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|258552157|gb|ACV75103.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
mobilis NCIMB 11163]
Length = 165
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 90/160 (56%), Gaps = 4/160 (2%)
Query: 1 MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M K P +T +G +K+++ ERP+I++ +S A GD SEN +Y ++
Sbjct: 1 MTTKNPNYITPQGLEKLKERYHHLMNTERPKIVEIVSWAAGNGDRSENGDYIYGRKKMRE 60
Query: 59 NEGRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
+ ++ L + A V+D S + ++ FGATV++ +++ ++ +VG+ EAD
Sbjct: 61 IDRELSWLSRRLKAARVVDPSAVEDRSKVWFGATVTIADEDDN-QRQVALVGEDEADASQ 119
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
G +S SP+ARAL G LGD+ V P GEK +E++++ +
Sbjct: 120 GRISWKSPLARALRGAALGDLRIVRLPAGEKEWEVIEIGY 159
>gi|94497870|ref|ZP_01304436.1| transcription elongation factor [Sphingomonas sp. SKA58]
gi|94422759|gb|EAT07794.1| transcription elongation factor [Sphingomonas sp. SKA58]
Length = 161
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 4/160 (2%)
Query: 1 MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M P +T +GF K++ + ERP I++ +S A GD SEN +Y ++
Sbjct: 1 MATPYPNYITPEGFAKLRADYDHLLGVERPSIVEVVSWAAGNGDRSENGDYLYGRKRMRE 60
Query: 59 NEGRMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
+G++ L + A+V+D R+ FGATV++ +++ + +VG+ E DV +
Sbjct: 61 IDGQLKRLSKKMKDAKVVDPWQQPDKSRVYFGATVTIADEDDNH-RTVTLVGNDETDVDA 119
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
G + SPIARAL G +GD+ V P GE+ YE++ + +
Sbjct: 120 GRIGWGSPIARALRGAAVGDLRRVMLPAGEREYEVMAIRY 159
>gi|124267908|ref|YP_001021912.1| transcription elongation factor [Methylibium petroleiphilum PM1]
gi|124260683|gb|ABM95677.1| transcription elongation factor [Methylibium petroleiphilum PM1]
Length = 213
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T GF +++ EL +ERP++++ +S A GD SEN +Y K+ + R+
Sbjct: 55 KNYITPAGFARLRAELMQLLDDERPKVVETVSWAAKNGDRSENGDYLYGKKRLREIDRRI 114
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV D S G D++ FGATV+ + G ++ I G EAD VS
Sbjct: 115 RFLTKRLEIAEVADPSVHRGSDQVFFGATVTYAAPD-GVERTITIKGIDEADNLQAEVSW 173
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ +GD +++ P G +T E+++V +
Sbjct: 174 ISPVARALLKARVGDEVTLLTPQGPQTIEVIEVRY 208
>gi|291520868|emb|CBK79161.1| transcription elongation factor GreA [Coprococcus catus GD/7]
Length = 160
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + K +T G ++ EL + +R + + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MAETKKNIMTFAGLRALEDELFDLKVYKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRD 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ ELE ++ EV+ + D + G+ V L + ++ Y IVG EAD +G
Sbjct: 61 IEARIEELEKLLKNVEVVGQDEVDADTVGIGSRVKLYDVEMDEEVEYTIVGSTEADALNG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ ALIG ++G+ I V G+ ++IL++
Sbjct: 121 KISNESPVGAALIGSKVGETIVVETISGDLEFKILEI 157
>gi|304310877|ref|YP_003810475.1| Transcription elongation factor [gamma proteobacterium HdN1]
gi|301796610|emb|CBL44822.1| Transcription elongation factor [gamma proteobacterium HdN1]
Length = 158
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 89/156 (57%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+D +T +G+ ++QQEL +ERP++ K + A + GD SENA+YQ K+ +
Sbjct: 1 MDTNVITPEGYTELQQELDELWYKERPKVTKLVQWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + + V++ +++ ++ FGA V LV+ + + +++IVG E + VS
Sbjct: 61 RVRFLRGRLGKLRVVEYNSVQEGKVYFGAWVGLVDVDD-QRLSFRIVGPDEIYGKKNYVS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+++PI RA +GK GD I+V P K +EI + +
Sbjct: 120 VNAPIVRACLGKSEGDEITVRTPEATKEWEIESIEY 155
>gi|239997048|ref|ZP_04717572.1| transcription elongation factor GreB [Alteromonas macleodii ATCC
27126]
Length = 161
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG+ K++QEL + +EERP I + ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITRKGYLKLKQELDFLWREERPEITRKVTWAASLGDRSENADYQYNKKKLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+D + ++ FGA V + +G ++VG E + +SI SP+
Sbjct: 66 RKCLENLKVVDYDSQQEGKVFFGAWVEIEN-EAGKVMELRLVGYDEIFGRKDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+GKE D V G K + I ++ +
Sbjct: 125 ARALLGKEEDDEFVVKTETGTKEWWINRIWY 155
>gi|186475439|ref|YP_001856909.1| transcription elongation factor GreB [Burkholderia phymatum STM815]
gi|184191898|gb|ACC69863.1| transcription elongation factor GreB [Burkholderia phymatum STM815]
Length = 190
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL E RP ++K +S A + GD SEN +Y K + R+
Sbjct: 29 KNYITPAGYRRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I AEV++ S + D++ FGATV G+ +IVG E ++ G VS
Sbjct: 89 RFLTKRIDLAEVVNSSRQENTDQVFFGATVDYA-TEDGETHTVRIVGIDEVNLDEGHVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARAL+ ++GD ++++ P G + ++L V +
Sbjct: 148 ISPIARALLKAKVGDQVTLHTPAGPQPIDVLDVRY 182
>gi|85374381|ref|YP_458443.1| transcription elongation factor [Erythrobacter litoralis HTCC2594]
gi|84787464|gb|ABC63646.1| transcription elongation factor [Erythrobacter litoralis HTCC2594]
Length = 159
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G+ ++ ERP I++ +S A GD SEN +Y ++ + +A
Sbjct: 7 PITPGGYAALKARYDRLLGTERPEIVEIVSWAAGNGDRSENGDYIYGRKRMREIDRELAH 66
Query: 66 LENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + A VI+ S DR FGAT++L +++ +K +VGD E D +G + SS
Sbjct: 67 LARRMKHARVIEPSEQPDKDRAFFGATLTLADEDD-ARKTVTLVGDDEQDASAGKIGWSS 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL G +GD+ +V+ P GE+ +E++ + +
Sbjct: 126 PLARALRGARVGDLRTVHLPSGEREWEVMAIAY 158
>gi|154490393|ref|ZP_02030654.1| hypothetical protein PARMER_00626 [Parabacteroides merdae ATCC
43184]
gi|154089004|gb|EDN88048.1| hypothetical protein PARMER_00626 [Parabacteroides merdae ATCC
43184]
Length = 156
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 94/151 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+DKI E+ + + +RP I I+EAR GDLSENAEY AAKE Q + E ++++
Sbjct: 5 YMTKDGYDKILAEINYLETVKRPEISAQIAEARDKGDLSENAEYDAAKEAQGIMEAKLSQ 64
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I+ A +ID + + D + V + + Y +V D EA+++ G +++S+P
Sbjct: 65 LKGLISNARLIDETRVQTDEVQILNKVKIKNTKNNAVMTYTLVSDSEANLKEGKIAVSTP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+GK++GDI+ + P G ++EI+ +
Sbjct: 125 IAQGLMGKKVGDIVEIKVPSGMMSFEIMDIS 155
>gi|34498839|ref|NP_903054.1| transcription elongation factor GreB [Chromobacterium violaceum
ATCC 12472]
gi|34104691|gb|AAQ61048.1| transcription elongation factor [Chromobacterium violaceum ATCC
12472]
Length = 184
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 79/155 (50%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL ERP I++ ++ A + GD SEN +Y K + R+
Sbjct: 27 KNYITPMGWQRLKDELYHLVNRERPEIVQVVNWAASNGDRSENGDYLYGKRRLREIDRRI 86
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L + AEV+D F + L+++ G ++ IVG E D+Q G +S
Sbjct: 87 RFLTKRLEIAEVVDPEAREATDQVFFSATVLIQRGDGSEQRLSIVGVDEIDLQRGRISWI 146
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIARAL+ GD + P G++ E+L+V ++
Sbjct: 147 SPIARALLKSREGDTVLFRGPDGDEDIEVLEVSYV 181
>gi|293609918|ref|ZP_06692220.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828370|gb|EFF86733.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 164
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L +
Sbjct: 1 MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120
R+ L + +++D S ++ FGA V + + G++K +IVG E D +
Sbjct: 61 RVRYLGKRLEELKIVDYSPEQDGKVYFGAWVEIENEE-GEQKTLRIVGIDEIYDHHPQHI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+GKE+ D I V+ P G+K + I + +
Sbjct: 120 SIESPMARALLGKEVDDEIEVHTPSGKKLWYINTIRY 156
>gi|304436291|ref|ZP_07396269.1| transcription elongation factor GreA [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304370696|gb|EFM24343.1| transcription elongation factor GreA [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 156
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 3/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T G++K+ ++L + + R I + + A A GDLSEN+EY AK Q
Sbjct: 1 MAEKKVMLTEDGYNKLVEKLNYLKSVRRIEIAERLKAAIALGDLSENSEYDDAKNEQAFL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG + ELEN I +++I G + G+ V + + +++ + IVG EAD G
Sbjct: 61 EGEIQELENKIRNSDII--KAGDGKTVTMGSRVMVKDLEFDEEETFLIVGSTEADPDEGK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL+G+++G I+VNAP G Y+I+ +
Sbjct: 119 ISNESPLGEALLGQKIGRTINVNAPAGVIQYKIIDIK 155
>gi|317495734|ref|ZP_07954099.1| transcription elongation factor GreA [Gemella moribillum M424]
gi|316914187|gb|EFV35668.1| transcription elongation factor GreA [Gemella moribillum M424]
Length = 162
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 97/156 (62%), Gaps = 4/156 (2%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ +T +G+DK+ +EL ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+
Sbjct: 8 EYQMTQEGYDKLVEELEHYKKVKRPEVIEKIKVARSFGDLSENSEYDAAKDEQGFIEQRI 67
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E +I A +I++ S I G TV+ E +G + Y+IVG EA+ +S
Sbjct: 68 LEMEQMIRYAVIIELDEKS-SAIRLGNTVTYQELPNGATETYKIVGSAEANPFEFKISND 126
Query: 124 SPIARALIGKELGDIISVNAPGGE---KTYEILQVL 156
SP+A+AL+GKE+GD++ V+ P G ++L+V
Sbjct: 127 SPVAQALLGKEVGDVVKVSLPTGPEDSMDIKVLEVE 162
>gi|88798240|ref|ZP_01113826.1| transcription elongation factor GreB [Reinekea sp. MED297]
gi|88779016|gb|EAR10205.1| transcription elongation factor GreB [Reinekea sp. MED297]
Length = 170
Score = 144 bits (365), Expect = 3e-33, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G +++ EL + ERPR+ + +S+A GD SENAEY K+ + R+
Sbjct: 14 YITPEGEARMRAELHELWKVERPRVTQEVSDAAKQGDRSENAEYIYGKKRLRQIDSRVRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + +V+ R+ FGA V +V+++ + ++IVG E DV +S+ SP
Sbjct: 74 LTKRLEKLQVVHARPDDQSRVFFGAWVRVVDED-ESPRVFRIVGTDEFDVDPRYISVDSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ K++ D + V P GE Y + Q+ +
Sbjct: 133 MARALLKKQVDDEVIVRLPDGEAVYYVDQISY 164
>gi|300813174|ref|ZP_07093548.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|313124166|ref|YP_004034425.1| transcription elongation factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|300495832|gb|EFK30980.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|312280729|gb|ADQ61448.1| Transcription elongation factor [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
Length = 162
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +KI +T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q
Sbjct: 1 MPEKIYEMTAEGKKQLEEELQNLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ + + A ++D + D ++ G TV++ E + + Y+IVG ++D G
Sbjct: 61 EERIDAVSEQLKYAVIVDTDAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
+S SPI +AL+G + G+ + +N +Y+++
Sbjct: 121 ISNESPIGKALLGHKKGETVKINVDSANVSYDVV 154
>gi|144898302|emb|CAM75166.1| Prokaryotic transcription elongation factor GreA/GreB
[Magnetospirillum gryphiswaldense MSR-1]
Length = 180
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 86/156 (55%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K VT +G + +EL + ERPRI++ +S A GD SEN +Y K+ + R+
Sbjct: 24 KNYVTPQGHRALIEELDQLWRVERPRIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRV 83
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I +EV+ R+ FGATV+ E++ G ++ +VG EAD+ G VS
Sbjct: 84 RFLRKRIENSEVVAPELQTDRSRVYFGATVTYAEED-GAERKVTLVGVDEADINHGKVSW 142
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ARAL+ E+GD + + +P G + E++ + ++
Sbjct: 143 VSPVARALLRAEVGDTVIIRSPTGRREIEVVAIEYL 178
>gi|94499115|ref|ZP_01305653.1| transcription elongation factor GreB [Oceanobacter sp. RED65]
gi|94428747|gb|EAT13719.1| transcription elongation factor GreB [Oceanobacter sp. RED65]
Length = 163
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 80/157 (50%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T +G ++ EL + + ERP++ + + +A A GD SENAEY K+ +
Sbjct: 1 MSKADLITPEGEQTLKDELDYLWRTERPKVTQQVKDAAALGDRSENAEYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + + V+ ++ F A + + G Y+IVG E D + +
Sbjct: 61 RRVRFLSKRLEKLTVVRDKPADQTKVFFSAWIQIEN-EQGQVHIYRIVGPDEIDHRPEYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI+SP+A+AL+GK+ GD ++V P G + +V +
Sbjct: 120 SINSPVAKALLGKQAGDDVAVQTPKGLSELYLDKVSY 156
>gi|90407158|ref|ZP_01215346.1| transcription elongation factor [Psychromonas sp. CNPT3]
gi|90311734|gb|EAS39831.1| transcription elongation factor [Psychromonas sp. CNPT3]
Length = 163
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 7/162 (4%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +GF +Q EL +E RP I + ++ A + GD S+NA+Y+ K + +
Sbjct: 1 MRTNLITPEGFKTLQTELEHLWREYRPEITRKVTWAASLGDRSDNADYKENKRILRQIDS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD------V 115
R+ L + + +I S +++ FGA +S+ + G+ KN++IVG E
Sbjct: 61 RIRFLTKRLQQVSIISPSKQQANKVFFGAKLSIEN-DEGEIKNFKIVGPDEIYQRGTLQT 119
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ +SI SP+ARAL+ E+ D V P G +T+ IL + +
Sbjct: 120 RKDYISIDSPMARALLKLEVDDEAQVKTPTGIQTWYILTIDY 161
>gi|313895523|ref|ZP_07829079.1| transcription elongation factor GreA [Selenomonas sp. oral taxon
137 str. F0430]
gi|312975649|gb|EFR41108.1| transcription elongation factor GreA [Selenomonas sp. oral taxon
137 str. F0430]
Length = 156
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T G++K+ ++L + + R + + + A A GDLSEN+EY AK Q
Sbjct: 1 MTEKKVMLTEDGYNKLVEKLNYLKSVRRIEVAERLKAAIALGDLSENSEYDDAKNEQAFL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG + ELEN I +++I G + G+ V++ + + + + IVG EAD G
Sbjct: 61 EGEIQELENKIRNSDII--KAGDGKSVTIGSRVTVKDLEFDEDETFLIVGSTEADPDEGK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL+G+++G +I+V+AP G Y+I+ +
Sbjct: 119 ISNESPLGMALLGQKIGKVINVSAPAGMIRYKIVDIK 155
>gi|121634487|ref|YP_974732.1| transcription elongation factor GreB [Neisseria meningitidis FAM18]
gi|304388016|ref|ZP_07370187.1| transcription elongation factor GreB [Neisseria meningitidis ATCC
13091]
gi|313668831|ref|YP_004049115.1| transcription elongation factor [Neisseria lactamica ST-640]
gi|120866193|emb|CAM09933.1| putative transcription elongation factor [Neisseria meningitidis
FAM18]
gi|254670524|emb|CBA06313.1| Transcription elongation factor [Neisseria meningitidis alpha153]
gi|254673612|emb|CBA09140.1| Transcription elongation factor [Neisseria meningitidis alpha275]
gi|304337964|gb|EFM04103.1| transcription elongation factor GreB [Neisseria meningitidis ATCC
13091]
gi|308388876|gb|ADO31196.1| putative transcription elongation factor [Neisseria meningitidis
alpha710]
gi|313006293|emb|CBN87756.1| putative transcription elongation factor [Neisseria lactamica
020-06]
gi|325127803|gb|EGC50711.1| transcription elongation factor GreB [Neisseria meningitidis N1568]
gi|325129850|gb|EGC52657.1| transcription elongation factor GreB [Neisseria meningitidis
OX99.30304]
gi|325131857|gb|EGC54557.1| transcription elongation factor GreB [Neisseria meningitidis M6190]
gi|325133796|gb|EGC56452.1| transcription elongation factor GreB [Neisseria meningitidis
M13399]
gi|325136088|gb|EGC58698.1| transcription elongation factor GreB [Neisseria meningitidis M0579]
gi|325137907|gb|EGC60482.1| transcription elongation factor GreB [Neisseria meningitidis
ES14902]
gi|325141938|gb|EGC64378.1| transcription elongation factor GreB [Neisseria meningitidis
961-5945]
gi|325143923|gb|EGC66233.1| transcription elongation factor GreB [Neisseria meningitidis
M01-240013]
gi|325203776|gb|ADY99229.1| transcription elongation factor GreB [Neisseria meningitidis
M01-240355]
gi|325206467|gb|ADZ01920.1| transcription elongation factor GreB [Neisseria meningitidis
M04-240196]
gi|325207735|gb|ADZ03187.1| transcription elongation factor GreB [Neisseria meningitidis
NZ-05/33]
Length = 163
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+
Sbjct: 6 KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLESAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LI GD + +N P G + EIL V +I
Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|332143379|ref|YP_004429117.1| transcription elongation factor GreB [Alteromonas macleodii str.
'Deep ecotype']
gi|327553401|gb|AEB00120.1| transcription elongation factor GreB [Alteromonas macleodii str.
'Deep ecotype']
Length = 161
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 51/151 (33%), Positives = 81/151 (53%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KG+ K++QEL + +EERP I + ++ A + GD SENA+YQ K+ + R+ L
Sbjct: 6 ITRKGYLKLKQELDFLWREERPEITRKVTWAASLGDRSENADYQYNKKKLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+D ++ FGA V + +G ++VG E + +SI SP+
Sbjct: 66 RKCLENLKVVDYDPQQEGKVFFGAWVEIEN-EAGKVMELRLVGYDEIFGRRDYISIDSPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARALIGKE D V G K + I ++ +
Sbjct: 125 ARALIGKEEDDEFVVKTETGTKEWWINRIWY 155
>gi|166030714|ref|ZP_02233543.1| hypothetical protein DORFOR_00388 [Dorea formicigenerans ATCC
27755]
gi|166029506|gb|EDR48263.1| hypothetical protein DORFOR_00388 [Dorea formicigenerans ATCC
27755]
Length = 160
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 84/155 (54%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T G +++EL + +R + I EAR GDLSENAEY AAK+ Q E
Sbjct: 3 AKKKLLTYAGLKALEEELENLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ AEV+ + D+I G TV + ++ +++VG EA+ G +S
Sbjct: 63 RIEELEAILKNAEVVVEDEVDFDKINVGCTVKAYDITFDEEIEFKLVGSTEANSLEGKIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ALIGK +GD++ V G Y++L +
Sbjct: 123 NESPVGHALIGKTIGDVVEVETQAGVMQYKVLDIT 157
>gi|325123157|gb|ADY82680.1| transcription elongation factor GreB [Acinetobacter calcoaceticus
PHEA-2]
Length = 164
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ ++ G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L +
Sbjct: 1 MKSNLISRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120
R+ L + +++D S ++ FGA V + + G++K +IVG E D +
Sbjct: 61 RVRYLGKRLEELKIVDYSPEQDGKVYFGAWVEIENEE-GEQKTLRIVGIDEIYDHHPQHI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+GKE+ D I V+ P G+K + I ++ +
Sbjct: 120 SIESPMARALLGKEVDDEIEVHTPSGKKLWYINKIRY 156
>gi|313889156|ref|ZP_07822812.1| transcription elongation factor GreA [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312844896|gb|EFR32301.1| transcription elongation factor GreA [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 157
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 86/156 (55%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E
Sbjct: 1 MEKDIFFTPEGLEKIENEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A+LE ++ A++ID ++ D + G+ V + E ++ ++ Y IVG EAD G +
Sbjct: 61 ERIAKLEMMVRNAKIIDEKDLNTDVVNIGSNVKVRELDTMEEDEYTIVGSAEADPLEGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ LIG +GD++ V P G YEI +
Sbjct: 121 SNESPVGSKLIGNRVGDVVEVEVPDGIIKYEICGIT 156
>gi|168830125|gb|ACA34353.1| transcription elongation factor [Paenibacillus polymyxa]
Length = 165
Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T +G K++ EL + +R + + I A YGD+SEN+EY+ AK Q
Sbjct: 8 MSDKEVILTQEGLRKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 67
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I+ + D + GATV++ + GD Y IVG E+D
Sbjct: 68 EGRVITLEKMLRNARIINSDEIDTDVVGVGATVTVEDLEFGDITEYAIVGSAESDPLQNK 127
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++GK+ G ++ V P G Y+I+ +
Sbjct: 128 ISNESPVGKAILGKKKGTVVDVTVPAGVIQYKIVDIK 164
>gi|59800713|ref|YP_207425.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA
1090]
gi|194097981|ref|YP_002001029.1| transcription elongation factor GreB [Neisseria gonorrhoeae
NCCP11945]
gi|239998449|ref|ZP_04718373.1| transcription elongation factor GreB [Neisseria gonorrhoeae 35/02]
gi|240013574|ref|ZP_04720487.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI18]
gi|240016013|ref|ZP_04722553.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA6140]
gi|240080154|ref|ZP_04724697.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA19]
gi|240112368|ref|ZP_04726858.1| transcription elongation factor GreB [Neisseria gonorrhoeae MS11]
gi|240115108|ref|ZP_04729170.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID18]
gi|240117391|ref|ZP_04731453.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID1]
gi|240120643|ref|ZP_04733605.1| transcription elongation factor GreB [Neisseria gonorrhoeae
PID24-1]
gi|240122948|ref|ZP_04735904.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID332]
gi|240125199|ref|ZP_04738085.1| transcription elongation factor GreB [Neisseria gonorrhoeae
SK-92-679]
gi|240127654|ref|ZP_04740315.1| transcription elongation factor GreB [Neisseria gonorrhoeae
SK-93-1035]
gi|254493169|ref|ZP_05106340.1| transcription elongation factor greB [Neisseria gonorrhoeae 1291]
gi|260441075|ref|ZP_05794891.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI2]
gi|268594310|ref|ZP_06128477.1| transcription elongation factor GreB [Neisseria gonorrhoeae 35/02]
gi|268596305|ref|ZP_06130472.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA19]
gi|268598428|ref|ZP_06132595.1| transcription elongation factor greB [Neisseria gonorrhoeae MS11]
gi|268600782|ref|ZP_06134949.1| transcription elongation factor greB [Neisseria gonorrhoeae PID18]
gi|268603087|ref|ZP_06137254.1| transcription elongation factor greB [Neisseria gonorrhoeae PID1]
gi|268681568|ref|ZP_06148430.1| transcription elongation factor greB [Neisseria gonorrhoeae PID332]
gi|268683796|ref|ZP_06150658.1| transcription elongation factor greB [Neisseria gonorrhoeae
SK-92-679]
gi|268686038|ref|ZP_06152900.1| transcription elongation factor greB [Neisseria gonorrhoeae
SK-93-1035]
gi|291044409|ref|ZP_06570118.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI2]
gi|293399588|ref|ZP_06643741.1| transcription elongation factor GreB [Neisseria gonorrhoeae F62]
gi|59717608|gb|AAW89013.1| putative transcription elongation [Neisseria gonorrhoeae FA 1090]
gi|193933271|gb|ACF29095.1| transcription elongation factor GreB [Neisseria gonorrhoeae
NCCP11945]
gi|226512209|gb|EEH61554.1| transcription elongation factor greB [Neisseria gonorrhoeae 1291]
gi|268547699|gb|EEZ43117.1| transcription elongation factor GreB [Neisseria gonorrhoeae 35/02]
gi|268550093|gb|EEZ45112.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA19]
gi|268582559|gb|EEZ47235.1| transcription elongation factor greB [Neisseria gonorrhoeae MS11]
gi|268584913|gb|EEZ49589.1| transcription elongation factor greB [Neisseria gonorrhoeae PID18]
gi|268587218|gb|EEZ51894.1| transcription elongation factor greB [Neisseria gonorrhoeae PID1]
gi|268621852|gb|EEZ54252.1| transcription elongation factor greB [Neisseria gonorrhoeae PID332]
gi|268624080|gb|EEZ56480.1| transcription elongation factor greB [Neisseria gonorrhoeae
SK-92-679]
gi|268626322|gb|EEZ58722.1| transcription elongation factor greB [Neisseria gonorrhoeae
SK-93-1035]
gi|291011303|gb|EFE03299.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI2]
gi|291610157|gb|EFF39279.1| transcription elongation factor GreB [Neisseria gonorrhoeae F62]
gi|317163732|gb|ADV07273.1| transcription elongation factor GreB [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 163
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+
Sbjct: 6 KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGVDEIDTAQNKISW 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LI GD + +N P G + EIL V +I
Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|332972986|gb|EGK10926.1| transcription elongation factor GreB [Kingella kingae ATCC 23330]
Length = 168
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 57/161 (35%), Positives = 85/161 (52%), Gaps = 4/161 (2%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M D K +T G ++Q EL +ERP I + ++ A + GD SEN +Y K
Sbjct: 6 MTDTPKNYITPTGHRRLQDELYQLVHKERPEIAQIVNWAASNGDRSENGDYLYGKRRMCE 65
Query: 59 NEGRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
+ R+ L + A V++ T D+I F ATV+L E+ +G ++ +IVG+ E D
Sbjct: 66 IDRRIRFLTKRLEHALVVNPETREPTDQIFFAATVTL-ERGNGAEQVVKIVGEDEIDSAQ 124
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
G +S SP+AR LI GD + +N P G + EIL V +I
Sbjct: 125 GKISWKSPLARVLIKAREGDTVWLNTPDGREQIEILIVEYI 165
>gi|308066908|ref|YP_003868513.1| transcription elongation factor greA (transcript cleavage factor
greA) [Paenibacillus polymyxa E681]
gi|310639545|ref|YP_003944303.1| transcription elongation factor [Paenibacillus polymyxa SC2]
gi|305856187|gb|ADM67975.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Paenibacillus polymyxa E681]
gi|309244495|gb|ADO54062.1| Transcription elongation factor [Paenibacillus polymyxa SC2]
Length = 158
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T +G K++ EL + +R + + I A YGD+SEN+EY+ AK Q
Sbjct: 1 MSDKEVILTQEGLRKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE ++ A +I+ + D + GATV++ + GD Y IVG E+D
Sbjct: 61 EGRVITLEKMLRNARIINSDEIDTDVVGVGATVTVEDLEFGDITEYAIVGSAESDPLQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++GK+ G ++ V P G Y+I+ +
Sbjct: 121 ISNESPVGKAILGKKKGTVVDVTVPAGVIQYKIVDIK 157
>gi|218767812|ref|YP_002342324.1| transcription elongation factor GreB [Neisseria meningitidis Z2491]
gi|34222639|sp|Q9JVD0|GREB_NEIMA RecName: Full=Transcription elongation factor greB; AltName:
Full=Transcript cleavage factor greB
gi|121051820|emb|CAM08126.1| putative transcription elongation factor [Neisseria meningitidis
Z2491]
gi|319410062|emb|CBY90396.1| transcription elongation factor GreB (transcript cleavage factor
GreB) [Neisseria meningitidis WUE 2594]
Length = 163
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+
Sbjct: 6 KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LI GD + +N P G + EIL V +I
Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|145589258|ref|YP_001155855.1| transcription elongation factor GreB [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047664|gb|ABP34291.1| transcription elongation factor GreB [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 166
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K +T G ++I+ EL +RP ++K + A + GD SEN +Y K+ +
Sbjct: 1 MEEKNYITPVGHERIKTELLQLLNLDRPEVVKVVHWAASNGDRSENGDYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDIS-----TMSGDRIAFGATVS---LVEKNSGDKKNYQIVGDQE 112
R+ L + A V+D S ++I FGATV+ L ++G + IVG E
Sbjct: 61 RRIRFLNQRLEFAVVVDNSARKSGDQDAEQIFFGATVTYSPLKGADAGKEITITIVGVDE 120
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
D++ VS SPIA+ALI LGD + + P G EIL+V ++
Sbjct: 121 VDLEKNHVSWVSPIAKALIKARLGDCVKIQTPTGPTEIEILEVQYL 166
>gi|295110734|emb|CBL24687.1| transcription elongation factor GreA [Ruminococcus obeum A2-162]
Length = 160
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 86/154 (55%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K +T G K++ EL + +R + + I EAR GDLSENAEY AAK+ Q E R
Sbjct: 4 KKNLLTYAGLKKLEDELHDLKVVKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+E I+ AEV+ + DRI+ G V + + ++ ++VG EA+ G +S
Sbjct: 64 IEEIEKILKNAEVVVEDEVDLDRISVGCKVKVYDYEFEEEMELKLVGSTEANSLEGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +ALIG GD++ V P G Y++L++
Sbjct: 124 ESPVGKALIGAHTGDVVEVEMPMGIMKYKVLEIQ 157
>gi|269836289|ref|YP_003318517.1| transcription elongation factor GreA [Sphaerobacter thermophilus
DSM 20745]
gi|269785552|gb|ACZ37695.1| transcription elongation factor GreA [Sphaerobacter thermophilus
DSM 20745]
Length = 157
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++IP+T +G +Q EL R I +A+ AR GDL ENA Y AAK Q EGR
Sbjct: 4 ERIPITKEGLKALQDELDDLVNRRRVEIAQALQAAREEGDLRENAGYDAAKHDQAFIEGR 63
Query: 63 MAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ E+E+I+ RAEVID + + G+TV++ + G ++ Y IVG EA +G +S
Sbjct: 64 IREIEDILRRAEVIDEAPNGDARVVRLGSTVTI--EIDGAQETYTIVGAVEAKPAAGRIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP RAL+G G+ + + P I+ V
Sbjct: 122 NESPFGRALLGHREGEEVEIQTPAAVLHARIVNVE 156
>gi|325685811|gb|EGD27883.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 162
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +KI +T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q
Sbjct: 1 MPEKIYEMTAEGKKQLEEELQNLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ + + A ++D + D ++ G TV++ E + + Y+IVG ++D G
Sbjct: 61 EERIDAVSEQLKYAVIVDTDAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
VS SPI +AL+G + G+ + +N +Y+++
Sbjct: 121 VSNESPIGKALLGHKKGETVKINVDSANVSYDVV 154
>gi|251796519|ref|YP_003011250.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2]
gi|247544145|gb|ACT01164.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2]
Length = 158
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 90/154 (58%), Gaps = 2/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++I +T +G K++ EL + +R + + A +YGDL EN+EY +AK+ Q E R
Sbjct: 4 NEIILTPEGLKKLEDELEELKTVKRSELAHRLKVAISYGDLKENSEYHSAKDDQAFMETR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +LE ++ A V ++ ++ GA V L + +K Y++VG EADV +S
Sbjct: 64 ITQLEKMLKTARV--SNSKDTTKVGVGAIVVLNDIEVAEKIEYRLVGPAEADVFENKISY 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+GK +GD ISV+AP G YE+L++
Sbjct: 122 ESPMGQALMGKSVGDTISVDAPIGVIKYELLEIK 155
>gi|161869630|ref|YP_001598797.1| transcription elongation factor GreB [Neisseria meningitidis
053442]
gi|296314716|ref|ZP_06864657.1| transcription elongation factor GreB [Neisseria polysaccharea ATCC
43768]
gi|161595183|gb|ABX72843.1| transcription elongation factor [Neisseria meningitidis 053442]
gi|296838551|gb|EFH22489.1| transcription elongation factor GreB [Neisseria polysaccharea ATCC
43768]
Length = 163
Score = 144 bits (363), Expect = 5e-33, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+
Sbjct: 6 KNYITPAGWQALKDELYRLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLESAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LI GD + +N P G + EIL V +I
Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|313894662|ref|ZP_07828225.1| transcription elongation factor GreA [Veillonella sp. oral taxon
158 str. F0412]
gi|313440852|gb|EFR59281.1| transcription elongation factor GreA [Veillonella sp. oral taxon
158 str. F0412]
Length = 157
Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V + +T+ G K+++EL + + R + + I A YGD+SEN+EY AK Q EG
Sbjct: 4 VKETLLTADGLKKLEEELAYYKSVRRIEVSERIKTAIEYGDISENSEYDDAKNEQAFIEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ELEN I A++ID S + GD ++ G+ V +++ D+ Y IVG EAD + +S
Sbjct: 64 HIVELENKINTAKIIDES-VKGDVVSVGSKVIVLDTMYNDELEYVIVGSSEADPFNNRIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +A++GK GD + V+ P G T+++L +
Sbjct: 123 NESPVGKAILGKRKGDEVEVSTPDGPVTFKVLAIQ 157
>gi|289626983|ref|ZP_06459937.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289646809|ref|ZP_06478152.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330867499|gb|EGH02208.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 157
Score = 143 bits (362), Expect = 5e-33, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKI-ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ +
Sbjct: 60 RRVRYLRKRLEDMRVVHYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE GD + VN P EK + + +++
Sbjct: 119 SIDSPMARALLKKEEGDEVLVNTPEVEKLWFVNSIVY 155
>gi|160939909|ref|ZP_02087256.1| hypothetical protein CLOBOL_04800 [Clostridium bolteae ATCC
BAA-613]
gi|158437343|gb|EDP15108.1| hypothetical protein CLOBOL_04800 [Clostridium bolteae ATCC
BAA-613]
Length = 160
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T G + + EL+ + +R + + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKHILTYAGLKQYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ELE ++ AEV+ + D+I G V L++ ++ + IVG EA+
Sbjct: 61 ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKLLDVEYDEEMEFYIVGSTEANSLQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ RALIGK +G+ + V G+ Y++L++
Sbjct: 121 ISNESPVGRALIGKVVGECVDVETQAGDIQYKVLEIQ 157
>gi|325202515|gb|ADY97969.1| transcription elongation factor GreB [Neisseria meningitidis
M01-240149]
Length = 163
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+
Sbjct: 6 KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LI GD + +N P G + EIL V +I
Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|320353912|ref|YP_004195251.1| transcription elongation factor GreA [Desulfobulbus propionicus DSM
2032]
gi|320122414|gb|ADW17960.1| transcription elongation factor GreA [Desulfobulbus propionicus DSM
2032]
Length = 161
Score = 143 bits (362), Expect = 6e-33, Method: Composition-based stats.
Identities = 72/156 (46%), Positives = 111/156 (71%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +IP++ G ++++EL ++ ERP I+KAI ARA+GDLSENAEY AAKE Q+L E
Sbjct: 1 MVVRIPMSLTGNRQLREELERLERVERPEIVKAIEVARAHGDLSENAEYHAAKERQSLVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ EL++ + RAEVID S +S +R FG V+L++ + + YQ++G +EADV+ G +
Sbjct: 61 GRILELKDKLGRAEVIDCSKVSTNRAVFGTVVTLMDLTTEVEVTYQLLGPEEADVKKGSI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SP+ +AL+GKE+GD + PGG + +E++ +
Sbjct: 121 SVLSPLGQALLGKEIGDEVVTKTPGGMREFEVIDIT 156
>gi|295102173|emb|CBK99718.1| transcription elongation factor GreA [Faecalibacterium prausnitzii
L2-6]
Length = 161
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 90/158 (56%), Gaps = 1/158 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +++ G +Q+EL + + R + + I EAR++GDLSEN+EY AK Q L E
Sbjct: 1 MAQEIKMSAAGLKAMQEELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE +I A VID S +S + ++ G V++ + + + Y IVG EAD +G +
Sbjct: 61 NRITELEQMIKNAVVIDESELSVESVSVGTHVTIQMEGEDEVEEYDIVGRTEADPLNGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
S SP+ AL+ K +GD V P G Y++L +
Sbjct: 121 SDESPVGHALLEKAVGDTAEVLLPTGLTVNYKVLGITH 158
>gi|83313517|ref|YP_423781.1| transcription elongation factor GreB [Magnetospirillum magneticum
AMB-1]
gi|82948358|dbj|BAE53222.1| Transcription elongation factor [Magnetospirillum magneticum AMB-1]
Length = 182
Score = 143 bits (362), Expect = 7e-33, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K + +GF ++ EL + ERP++++ +S A GD SEN +Y K+ + R+
Sbjct: 27 KNYMRPQGFAALKAELSHLHKIERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRI 86
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D D+I FGATV+ ++ IVG EAD++ GL+S
Sbjct: 87 RFLTKRMESAHVVDPEQQKKRDQIFFGATVTYANARD-EEITVTIVGIDEADLEKGLISW 145
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ GD + V P G + E++ + +
Sbjct: 146 ISPVARALLKAAEGDSVPVRTPSGVEMIEVVAISY 180
>gi|288801019|ref|ZP_06406475.1| transcription elongation factor GreA [Prevotella sp. oral taxon 299
str. F0039]
gi|288331953|gb|EFC70435.1| transcription elongation factor GreA [Prevotella sp. oral taxon 299
str. F0039]
Length = 155
Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats.
Identities = 51/151 (33%), Positives = 91/151 (60%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ +
Sbjct: 3 YMSQEGYDKLVAELKHLESVERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLESKINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ ++ A+++D S +S D + + V + + K Y IV + EA+++ G ++I++P
Sbjct: 63 IKVSLSEAKIVDTSLLSADAVQIMSKVVMTNLGNNAKMTYTIVSESEANLKEGKLAITTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ K++GD + + P G I +
Sbjct: 123 IAQGLLNKKVGDEVEIKIPNGTIKLRIDAIS 153
>gi|325197909|gb|ADY93365.1| transcription elongation factor GreB [Neisseria meningitidis G2136]
Length = 163
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A GD SEN Y K + R+
Sbjct: 6 KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGNYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLESAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LI GD + +N P G + EIL V +I
Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|319638512|ref|ZP_07993274.1| transcription elongation factor greB [Neisseria mucosa C102]
gi|317400261|gb|EFV80920.1| transcription elongation factor greB [Neisseria mucosa C102]
Length = 163
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+
Sbjct: 6 KNYITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D D+I FGATV L+ + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLEAAVVVDPEAREATDQIFFGATVGLL-RGDGREQTVKIVGVDEIDTAKNKISW 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR+LI GD + +N P G++ EIL V +I
Sbjct: 125 ISPLARSLIKAREGDEVVLNTPEGQEVIEILSVEYI 160
>gi|167769661|ref|ZP_02441714.1| hypothetical protein ANACOL_00995 [Anaerotruncus colihominis DSM
17241]
gi|167668022|gb|EDS12152.1| hypothetical protein ANACOL_00995 [Anaerotruncus colihominis DSM
17241]
Length = 151
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 86/149 (57%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G+D +++EL + R I + I AR +GDLSEN+EY AK Q + E R+ +L
Sbjct: 1 MTQEGYDALKKELNELKSVTRGEISEKIRVARGFGDLSENSEYDEAKNEQAVVEARIKKL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E+ + ++I+ +S D ++ G+ V +++ + ++ Y I E+ +S SP+
Sbjct: 61 EDQLKHVKIIERDQISTDVVSVGSRVKILDMDYDEEMVYTIASSVESHNDLESISDESPV 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+ LIG ++GD++ ++AP +IL++
Sbjct: 121 GKGLIGHKVGDVVEIHAPAAVLKLKILEI 149
>gi|257867772|ref|ZP_05647425.1| prokaryotic transcription elongation factor GreA [Enterococcus
casseliflavus EC30]
gi|257874099|ref|ZP_05653752.1| prokaryotic transcription elongation factor GreA [Enterococcus
casseliflavus EC10]
gi|257876660|ref|ZP_05656313.1| prokaryotic transcription elongation factor GreA [Enterococcus
casseliflavus EC20]
gi|325571033|ref|ZP_08146605.1| transcription elongation factor GreA [Enterococcus casseliflavus
ATCC 12755]
gi|257801855|gb|EEV30758.1| prokaryotic transcription elongation factor GreA [Enterococcus
casseliflavus EC30]
gi|257808263|gb|EEV37085.1| prokaryotic transcription elongation factor GreA [Enterococcus
casseliflavus EC10]
gi|257810826|gb|EEV39646.1| prokaryotic transcription elongation factor GreA [Enterococcus
casseliflavus EC20]
gi|325156118|gb|EGC68304.1| transcription elongation factor GreA [Enterococcus casseliflavus
ATCC 12755]
Length = 159
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 72/157 (45%), Positives = 105/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEQELEELKTVKRGEIIERIKVARSFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LEN+I AE+ID + D ++ G TV VE GD++ Y IVG EAD SG
Sbjct: 61 EGRITTLENMIRFAEIIDNEGVDSDEVSIGKTVIFVELPDGDEEEYMIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIARALIGK++ D ++++ PGG+ I +V
Sbjct: 121 ISNDSPIARALIGKKVNDEVTISTPGGDMQVRITEVK 157
>gi|300987223|ref|ZP_07178060.1| transcription elongation factor GreB [Escherichia coli MS 200-1]
gi|300306258|gb|EFJ60778.1| transcription elongation factor GreB [Escherichia coli MS 200-1]
Length = 170
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 83/142 (58%), Gaps = 2/142 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAP 144
SP+ARAL+ KE+GD+ VN P
Sbjct: 133 DSPMARALLKKEVGDLAVVNNP 154
>gi|290969240|ref|ZP_06560765.1| transcription elongation factor GreA [Megasphaera genomosp. type_1
str. 28L]
gi|290780746|gb|EFD93349.1| transcription elongation factor GreA [Megasphaera genomosp. type_1
str. 28L]
Length = 161
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 4/157 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G K++ EL + R + K I EA A GDLSEN+EY AK Q E
Sbjct: 1 MNTETLITQEGLQKLKDELNELKSVRRITVSKRIQEAIALGDLSENSEYDDAKNEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+AELE I A++I + S ++ G+ V L + +G++ +Y +VG EAD + +
Sbjct: 61 GRIAELEGKIRTAKIIQAADDSAAKVRLGSHVVLEDVETGERFDYTVVGTAEADPFNNKI 120
Query: 121 SISSPIARALIG----KELGDIISVNAPGGEKTYEIL 153
S SP+ +A++G ++ +++V AP GE Y IL
Sbjct: 121 SNESPVGKAILGQLISQQEPVVVTVKAPAGELQYRIL 157
>gi|323485861|ref|ZP_08091196.1| transcription elongation factor [Clostridium symbiosum WAL-14163]
gi|323693200|ref|ZP_08107418.1| transcription elongation factor [Clostridium symbiosum WAL-14673]
gi|323400849|gb|EGA93212.1| transcription elongation factor [Clostridium symbiosum WAL-14163]
gi|323502683|gb|EGB18527.1| transcription elongation factor [Clostridium symbiosum WAL-14673]
Length = 160
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T G + + EL+ + +R I + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MAEKKNILTYAGLKQYEDELQDLKVNKRREIAQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ LE ++ AEV+ + D+I+ G V L++ ++ ++IVG EA+
Sbjct: 61 EARIEALEKLLKNAEVVVEDEIDLDKISVGCKVKLLDVEEDEEMEFKIVGSTEANSLQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL+GK+ G+ + V G Y+IL++
Sbjct: 121 ISNESPVGHALLGKKEGETVQVETQAGMIHYKILEIQ 157
>gi|71906765|ref|YP_284352.1| transcription elongation factor GreB [Dechloromonas aromatica RCB]
gi|71846386|gb|AAZ45882.1| transcription elongation factor GreB [Dechloromonas aromatica RCB]
Length = 185
Score = 143 bits (361), Expect = 8e-33, Method: Composition-based stats.
Identities = 57/153 (37%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G D+++ EL + ERP +++ +S A + GD SEN +Y K + R+
Sbjct: 30 YITPAGHDRLKSELEHLVKRERPHVVEIVSWAASNGDRSENGDYIYGKRRLREIDRRIRF 89
Query: 66 LENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + AEVID D+I FGATV++ N G Y IVG E DV G +S S
Sbjct: 90 LTKRLDVAEVIDPLRQGDNDQIFFGATVTIAGIN-GVANTYTIVGVDETDVSRGRISWIS 148
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARALI GD I +P G + +IL+V++
Sbjct: 149 PLARALIKSREGDSIRFQSPLGVREIDILEVVY 181
>gi|261417196|ref|YP_003250879.1| GreA/GreB family elongation factor [Fibrobacter succinogenes subsp.
succinogenes S85]
gi|261373652|gb|ACX76397.1| GreA/GreB family elongation factor [Fibrobacter succinogenes subsp.
succinogenes S85]
Length = 169
Score = 143 bits (361), Expect = 9e-33, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 89/154 (57%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K ++ +GF+K + E + ERP +I + A A GD SENA Y + + R+
Sbjct: 16 KHLISKEGFEKFKAEWEHLKYVERPAMINQVQAAAAEGDRSENAAYTYGRMRVREIDRRL 75
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
EL+ I+ A++++ + I FGATV +++K + +K Y IVGD+E D G +S+
Sbjct: 76 RELDRILDGAQIVENAATKDGSIRFGATVKMIDKKTKREKIYSIVGDKEIDPLQGRISMK 135
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPI AL GK+ GD + V AP G+ YEIL+V +
Sbjct: 136 SPIGEALQGKKAGDTVEVQAPRGKIVYEILEVNY 169
>gi|126664546|ref|ZP_01735530.1| transcription elongation factor GreB [Marinobacter sp. ELB17]
gi|126630872|gb|EBA01486.1| transcription elongation factor GreB [Marinobacter sp. ELB17]
Length = 157
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+D +QQEL + ERP + + ++ A GD SENA+YQ K+ +
Sbjct: 1 MKTNLITREGYDLLQQELDQLWRHERPEVTRKVTWAAGLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L +V+ S ++ FGA +SL++++ ++IVG E ++ S
Sbjct: 61 RVRYLRKRFEELKVVAYSPEQEGKVFFGAWISLLDEDD-KPLTFRIVGPDEIYGRNDYAS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ +P+ RA + KE+GD + V P GEKT+ I + +
Sbjct: 120 VDAPLVRACLKKEVGDEVVVILPAGEKTWLIETIRY 155
>gi|261367899|ref|ZP_05980782.1| transcription elongation factor GreA [Subdoligranulum variabile DSM
15176]
gi|282570711|gb|EFB76246.1| transcription elongation factor GreA [Subdoligranulum variabile DSM
15176]
Length = 162
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 60/159 (37%), Positives = 90/159 (56%), Gaps = 3/159 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ VT +G+ K++Q+L + +R + I AR YGDLSENAEY AAKE Q + E
Sbjct: 1 MAKEVVVTREGYKKLEQDLNELRTVKRKEVADKIKVARGYGDLSENAEYDAAKEEQAIVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS--GDKKNYQIVGDQEADVQSG 118
R+A+LE + A +ID S +S D ++ G V ++ + + + Y I G EAD+
Sbjct: 61 ARIADLEATLKVARIIDDSELSNDTVSIGMRVKILAEGDDPDEAEEYDITGSTEADMNLN 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+S SP+ ALIG + GD + V P G Y++L V
Sbjct: 121 RISDESPVGAALIGHKAGDEVDVTLPNGSIIVYKVLAVS 159
>gi|104774331|ref|YP_619311.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|103423412|emb|CAI98285.1| Transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|325126126|gb|ADY85456.1| Transcriptional elongation factor [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 162
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q
Sbjct: 1 MPEKTYEMTAEGKKQLEEELQTLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ + + A ++D + + D ++ G TV++ E + + Y+IVG ++D G
Sbjct: 61 EERINAISEQLKYAVIVDTAAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
VS SPI +AL+G + G+ + +N +Y+++
Sbjct: 121 VSNESPIGKALLGHKKGETVKINVDSANVSYDVV 154
>gi|154249834|ref|YP_001410659.1| transcription elongation factor GreA [Fervidobacterium nodosum
Rt17-B1]
gi|154153770|gb|ABS61002.1| transcription elongation factor GreA [Fervidobacterium nodosum
Rt17-B1]
Length = 156
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 90/154 (58%), Gaps = 1/154 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+ +T +G++ +++EL +++ I + I AR GDLSEN+EYQ AK Q
Sbjct: 1 MEKVKLTKEGYELLKKELDELKRQLMFEIPERIKAARELGDLSENSEYQEAKNEQGRIAS 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE ++ AE+I ++ S + G V L ++G++ Q+V QEAD+ + +S
Sbjct: 61 RINELEQMLMNAEIITEASNS-STVNLGDWVILKNLDTGEEMKIQLVNPQEADIFANKIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
I SP+ R + G + G + + AP G Y+++++
Sbjct: 120 IESPLGRGVNGAKKGQTVKIKAPKGIVKYQVIEI 153
>gi|261400370|ref|ZP_05986495.1| transcription elongation factor GreB [Neisseria lactamica ATCC
23970]
gi|269209803|gb|EEZ76258.1| transcription elongation factor GreB [Neisseria lactamica ATCC
23970]
Length = 163
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+
Sbjct: 6 KNYITPTGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LI GD + +N P G + EIL V +I
Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|317055778|ref|YP_004104245.1| transcription elongation factor GreA [Ruminococcus albus 7]
gi|315448047|gb|ADU21611.1| transcription elongation factor GreA [Ruminococcus albus 7]
Length = 158
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 88/150 (58%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
V+ G++K+ +E + +R + + + EAR++GDLSENAEY AK Q + E R+ EL
Sbjct: 7 VSKAGYNKLVEEKEYLVTVKRKEVAQKLKEARSFGDLSENAEYDEAKNEQAILESRINEL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I+ A V+D +S + G+ V L + + + QIVG E+D +G +S SPI
Sbjct: 67 EILISNATVVDDDEISVHEVGVGSYVKLKDLEFDEIETLQIVGSTESDPDNGKISDESPI 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+A + ++GDI V AP G +E+L++
Sbjct: 127 GKAALHMKVGDIFEVEAPAGMIKFEVLEIT 156
>gi|253580948|ref|ZP_04858210.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847790|gb|EES75758.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 160
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 86/154 (55%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K +T G K+++EL + +R + + I EAR GDLSENAEY AAK+ Q E R
Sbjct: 4 KKNLLTYAGLKKLEEELHDLKVVKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+E I+ AEV+ + D+I+ G V + + + +IVG EA+ G +S
Sbjct: 64 IEEIEKILKNAEVVVEDEVDLDKISVGCKVKVHDFEFEEDIELKIVGSTEANSLEGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +ALIG GD++ V P G Y++L++
Sbjct: 124 ESPVGKALIGAHTGDVVEVEMPAGIMKYKVLEIQ 157
>gi|225024039|ref|ZP_03713231.1| hypothetical protein EIKCOROL_00906 [Eikenella corrodens ATCC
23834]
gi|224943064|gb|EEG24273.1| hypothetical protein EIKCOROL_00906 [Eikenella corrodens ATCC
23834]
Length = 163
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 53/161 (32%), Positives = 87/161 (54%), Gaps = 4/161 (2%)
Query: 1 MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + P +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K
Sbjct: 1 MSNTTPNYITPVGWQALKDELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMRE 60
Query: 59 NEGRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
+ R+ L + A+V+D T D+I FGATV L+ + +G+++ +IVG E D
Sbjct: 61 IDRRIRFLTKRLEAAQVVDPETREATDQIFFGATVELL-RGNGEEQTVRIVGVDEIDTAR 119
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S +SP+ARAL+ GD I + P G + E+L V ++
Sbjct: 120 HKISWTSPLARALLKAREGDEIVFHGPEGREEIEVLSVAYV 160
>gi|169829310|ref|YP_001699468.1| transcription elongation factor GreA [Lysinibacillus sphaericus
C3-41]
gi|168993798|gb|ACA41338.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Lysinibacillus sphaericus C3-41]
Length = 154
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 93/154 (60%), Gaps = 4/154 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K+++EL + E R I++ I AR +GDLSENAEY +AKE Q EGR++ L
Sbjct: 1 MTAEGKRKLEEELVKLETETRKEIVERIKIARDFGDLSENAEYDSAKEEQAFLEGRISTL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG----DKKNYQIVGDQEADVQSGLVSI 122
+++I A +I ++ G TV+ VE +G ++++Y IVG EAD +S
Sbjct: 61 KSMIRNAVIISEDETDNSVVSLGKTVTFVEIINGKPSTEEESYTIVGSAEADPMEFRISN 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPIA+ L+G+ G+ ++V PGGE +I+ +
Sbjct: 121 ESPIAKGLLGRAEGEEVAVQTPGGEMKVKIVSIK 154
>gi|91791609|ref|YP_561260.1| transcription elongation factor GreB [Shewanella denitrificans
OS217]
gi|91713611|gb|ABE53537.1| transcription elongation factor GreB [Shewanella denitrificans
OS217]
Length = 166
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K+ EL + +E RP I K ++ A + GD SENA+Y+ K L +GR+ L
Sbjct: 12 ITAEGLAKLTHELNYLWREYRPEITKKVAWAASLGDRSENADYKENKRLLRQIDGRVRFL 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLVSISSP 125
I +V+ + ++ FGA V + + G KK ++IVG E G +SI SP
Sbjct: 72 RKRIEALKVVPYAAEQEGKVFFGAWVEIEN-DEGVKKRFRIVGPDEIYGDAKGYISIDSP 130
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ KE+ D SV P GE+ + I ++ +
Sbjct: 131 MARALLKKEVDDDASVLTPTGEQFWYINKIFY 162
>gi|227498561|ref|ZP_03928705.1| GreA/GreB family elongation factor [Acidaminococcus sp. D21]
gi|226904017|gb|EEH89935.1| GreA/GreB family elongation factor [Acidaminococcus sp. D21]
Length = 173
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 96/158 (60%), Gaps = 3/158 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M ++ +T +G K++ EL + + E+R ++ + + A +YGD+SEN+EY AK Q
Sbjct: 1 MAEQETILTEEGLKKLEDELDYLRSEKRQQVAERLKVAISYGDISENSEYDDAKNEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE +I A+VI S ++ ++ G+ V++ + + +++ Y +VG EAD +
Sbjct: 61 EGRILTLEKMIRNAKVIKDSEINKKVVSLGSQVTIKDMETEEEEEYTVVGTTEADPMADP 120
Query: 120 --VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ +A++G+++G + V P GE +Y+I+ +
Sbjct: 121 PRISNESPVGKAILGQKVGSVCKVPTPAGELSYKIVSI 158
>gi|153813031|ref|ZP_01965699.1| hypothetical protein RUMOBE_03439 [Ruminococcus obeum ATCC 29174]
gi|149830833|gb|EDM85923.1| hypothetical protein RUMOBE_03439 [Ruminococcus obeum ATCC 29174]
Length = 160
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 83/154 (53%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K +T G K++ EL + +R + I EAR GDLSENAEY AAK+ Q E R
Sbjct: 4 KKNLLTYAGLKKLEDELHDLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+E I+ AEV+ + D+I G V + + + +IVG EA+ G +S
Sbjct: 64 IEEIEKILKNAEVVVEDEVDLDKINVGCKVKVHDYEFDEDMELKIVGSTEANSLEGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +ALIG GD++ V P G Y++L++
Sbjct: 124 ESPVGKALIGAHTGDVVDVEMPMGIMKYKVLEIQ 157
>gi|121603719|ref|YP_981048.1| transcription elongation factor GreB [Polaromonas naphthalenivorans
CJ2]
gi|120592688|gb|ABM36127.1| transcription elongation factor GreB [Polaromonas naphthalenivorans
CJ2]
Length = 183
Score = 143 bits (360), Expect = 1e-32, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+++++ EL ERP+++ + A + GD SEN +Y K+ + R+
Sbjct: 27 KNYITPQGYNRLRVELLDLIDSERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AE+ + G D++ FGATV+ + + G ++ I+G EA G +S
Sbjct: 87 RFLTKRLEIAEISNPCVHHGNDQVFFGATVTYGD-DEGLERTVTILGVDEAISAMGQISW 145
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A AL+ +GD +++ P G + E+L+V +
Sbjct: 146 ISPVASALLKARVGDEVTLVTPQGTQLLEVLKVDY 180
>gi|332295594|ref|YP_004437517.1| transcription elongation factor GreA [Thermodesulfobium narugense
DSM 14796]
gi|332178697|gb|AEE14386.1| transcription elongation factor GreA [Thermodesulfobium narugense
DSM 14796]
Length = 159
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + I +T +G+D+++ EL + + + I + I EA+ + + N EY+ AK Q +
Sbjct: 1 MKEIINLTQEGYDRLKNELEYLRDVKLKEISERIQEAKDFAEDFGNLEYEEAKSEQAMVL 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE ++ A +ID + R+ G V + + N K Y I+ EAD +G +
Sbjct: 61 ARVNELEAQLSNARIIDKDKIEISRVGIGCKVVVKDLNKKTIKEYTILEPIEADPVNGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
S SP+ +AL GK++GD ++V+ PGG +++ +
Sbjct: 121 SFQSPVGKALFGKQVGDEVTVHTPGGQTIKLKVVSIE 157
>gi|229496616|ref|ZP_04390330.1| transcription elongation factor GreA [Porphyromonas endodontalis
ATCC 35406]
gi|229316513|gb|EEN82432.1| transcription elongation factor GreA [Porphyromonas endodontalis
ATCC 35406]
Length = 156
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 93/155 (60%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ +T GFD++ E+ ++EERP I +AI+EAR GDLSENAEY AA+E Q L E
Sbjct: 1 MEYHYMTQDGFDRLMDEISRLEREERPAIAQAIAEARDKGDLSENAEYDAAREAQGLLEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++++L+ +ID ST+ ++ V + + Y IV + +A+ + +S
Sbjct: 61 KISQLKTQAANTRIIDESTIDTSKVQLLTKVKVKRLDDNSIIEYTIVPEIDANFKERKLS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+++PIAR LIGK++G+I V P G +EIL++
Sbjct: 121 VTAPIARGLIGKKVGEIAEVQVPIGLLRFEILEIS 155
>gi|320528944|ref|ZP_08030036.1| transcription elongation factor GreA [Selenomonas artemidis F0399]
gi|320138574|gb|EFW30464.1| transcription elongation factor GreA [Selenomonas artemidis F0399]
Length = 150
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 86/150 (57%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G++K+ ++L + + R + + + A A GDLSEN+EY AK Q EG + EL
Sbjct: 2 LTEDGYNKLVEKLNYLKSVRRIEVAERLKAAIALGDLSENSEYDDAKNEQAFLEGEIQEL 61
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN I +++I G + G+ V++ + + + + IVG EAD G +S SP+
Sbjct: 62 ENKIRNSDII--KAGDGKSVTIGSRVTVKDLEFDEDETFLIVGSTEADPDEGKISNESPL 119
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
AL+G+++G +I+V+AP G Y+I+ +
Sbjct: 120 GMALLGQKIGKVINVSAPAGMIRYKIVDIK 149
>gi|315286030|gb|EFU45468.1| transcription elongation factor GreB [Escherichia coli MS 110-3]
gi|324014609|gb|EGB83828.1| transcription elongation factor GreB [Escherichia coli MS 60-1]
Length = 154
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 83/142 (58%), Gaps = 2/142 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 14 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 73
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + +++D S ++ FGA V + + G ++IVG E + +SI
Sbjct: 74 VRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISI 132
Query: 123 SSPIARALIGKELGDIISVNAP 144
SP+ARAL+ KE+GD+ VN P
Sbjct: 133 DSPMARALLKKEVGDLAVVNTP 154
>gi|326792442|ref|YP_004310263.1| transcription elongation factor GreA [Clostridium lentocellum DSM
5427]
gi|326543206|gb|ADZ85065.1| transcription elongation factor GreA [Clostridium lentocellum DSM
5427]
Length = 158
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M K + +T +G K++ EL + R + + + EARA GDLSENAEY AAKE Q
Sbjct: 1 MSSKSVLLTYEGIKKLEAELENLKTTRRNDVAEKLKEARAQGDLSENAEYDAAKEEQAEI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ELE ++ A VI+ + + + G TV L + ++ +Y IVG EAD +G
Sbjct: 61 EVRIVELETMLKNAVVIEAEEGAVEIVKPGYTVRLYDHTFEEEVDYLIVGSTEADPVNGR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL+ + +GDI+ V G YEIL +
Sbjct: 121 ISNESPVGAALMNRRVGDIVEVETSEGVDKYEILGIT 157
>gi|293115788|ref|ZP_05793017.2| transcription elongation factor GreA [Butyrivibrio crossotus DSM
2876]
gi|292808216|gb|EFF67421.1| transcription elongation factor GreA [Butyrivibrio crossotus DSM
2876]
Length = 165
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T +G K++ EL+ + R + + I EAR GDLSENAEY AAK+ Q
Sbjct: 8 MAEKKNLMTYEGLKKLEDELQDLKVNRRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 67
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ E+E I+ AEV D I G+TV++ + ++ +++VG EA
Sbjct: 68 EARIEEIEKILKNAEVAD-DEFGAGVINLGSTVTVYDCEFDEELVFKLVGSTEAKSLENK 126
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S +P+ +ALIGK GD + V P G Y+++ V
Sbjct: 127 ISNEAPLGKALIGKVAGDEVEVETPSGIMKYKVINVT 163
>gi|156740036|ref|YP_001430165.1| transcription elongation factor GreA [Roseiflexus castenholzii DSM
13941]
gi|229485906|sp|A7NFC5|GREA_ROSCS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|156231364|gb|ABU56147.1| transcription elongation factor GreA [Roseiflexus castenholzii DSM
13941]
Length = 157
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T G +++ EL + R I + I+ A+ GD+SE+ EY+ AK Q
Sbjct: 1 MSDKPAYLTRDGRARLEAELEELVTKGRKEIAERINAAKELGDISESGEYEDAKNQQAHL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ E+++I+ RA++ID S + G+ V++ +++ + IVG EA G
Sbjct: 61 EGRIREIKSILARAQIIDEENGSNHEVRIGSRVTVRIDGEHEEETWTIVGSTEAKPSEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI AL+GK ++V P G IL +
Sbjct: 121 ISNESPIGAALLGKRPSQQVTVETPSGTMKLTILNIQ 157
>gi|50085861|ref|YP_047371.1| transcription elongation factor and transcript cleavage
[Acinetobacter sp. ADP1]
gi|49531837|emb|CAG69549.1| transcription elongation factor and transcript cleavage
[Acinetobacter sp. ADP1]
Length = 157
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++ +T++G+ ++Q EL ++ERP I K +S A + GD SENA+Y K +
Sbjct: 1 MNRKLLTAEGYQRLQDELNDLVRKERPEITKIVSWAASLGDRSENADYIYNKRKLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + A ++ S + FGA V L + G+ ++IVGD+E + +S
Sbjct: 61 RIRYLTKLFEVAHKVEYSPEQDGKAYFGAWVELEN-DEGEIIKFRIVGDEEIYGRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIA+A +GK + D I V P G+K + I Q+ +
Sbjct: 120 LQSPIAKACLGKSVDDEIQVQTPTGKKIWYICQINY 155
>gi|283795848|ref|ZP_06345001.1| transcription elongation factor GreA [Clostridium sp. M62/1]
gi|291076479|gb|EFE13843.1| transcription elongation factor GreA [Clostridium sp. M62/1]
gi|295091062|emb|CBK77169.1| transcription elongation factor GreA [Clostridium cf.
saccharolyticum K10]
Length = 160
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T G + + EL+ + +R I + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKHILTYTGLKQYEDELQDLKVNKRQEIAQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ +LE ++ AEV+ + ++I G V L++ ++ ++IVG EA+
Sbjct: 61 EARIEQLEKLLKNAEVVVEEEIDLEKINIGCRVKLLDVEEDEEMEFKIVGSTEANSLQNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL+GK++GD++ V G Y++L++
Sbjct: 121 ISNESPVGHALLGKKVGDVVDVETQAGMIQYKVLEIQ 157
>gi|309378808|emb|CBX22634.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 163
Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+
Sbjct: 6 KNYITPTGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LI GD + +N P G + EIL V ++
Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYV 160
>gi|114561422|ref|YP_748935.1| transcription elongation factor GreB [Shewanella frigidimarina
NCIMB 400]
gi|114332715|gb|ABI70097.1| transcription elongation factor GreB [Shewanella frigidimarina
NCIMB 400]
Length = 161
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G++K++ E + +E+RP + K ++ A GD SENA+Y K L +
Sbjct: 1 MKTKLITLEGYNKLRIEHDYLWKEQRPEVTKIVTWAAGLGDRSENADYTFNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120
R+ L ++ +++ + ++ FGATV + ++GD K ++IVG +E D + +
Sbjct: 61 RVRYLRKLLPELKIVYYAPEQEGKVFFGATVEIEN-DAGDIKTFKIVGPEEIYDERKDYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ D V+ P G+KT+ I ++ +
Sbjct: 120 SIDSPMARALLKKQVDDEAVVSTPQGDKTWYINKISY 156
>gi|89095170|ref|ZP_01168094.1| transcription elongation factor GreB [Oceanospirillum sp. MED92]
gi|89080528|gb|EAR59776.1| transcription elongation factor GreB [Oceanospirillum sp. MED92]
Length = 169
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 90/155 (58%), Gaps = 4/155 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T++G+ ++ EL++ + +RP + +++ EA A GD SENAEY K+ + R+
Sbjct: 14 YITAEGYKRLNDELKYLWKVKRPEVTQSVKEAAAQGDRSENAEYIYGKKQLREIDRRVRY 73
Query: 66 LENIITRAEVID--ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L + V+D + D + FGA V+L+++ +K ++IVG E ++ +S+
Sbjct: 74 LSKRLEDMVVVDRAPTPDKQDTVFFGAWVTLLDEE-ELEKRFRIVGPDEIGDEADYISVD 132
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
SP+AR ++ K+LGD + + P G E YEIL++ +
Sbjct: 133 SPLARLILKKQLGDEVCLEKPDGSEAWYEILRIEY 167
>gi|261380528|ref|ZP_05985101.1| transcription elongation factor GreB [Neisseria subflava NJ9703]
gi|284796784|gb|EFC52131.1| transcription elongation factor GreB [Neisseria subflava NJ9703]
Length = 163
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 74/155 (47%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+
Sbjct: 6 KNYITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L + A V+D F + + + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLEAAVVVDPEAREATDQVFFSATVGLLRGDGREQTVKIVGVDEIDTAKNKISWI 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR+LI GD + +N P G + EIL V +I
Sbjct: 126 SPLARSLIKAREGDEVVLNTPEGREVIEILSVEYI 160
>gi|226324188|ref|ZP_03799706.1| hypothetical protein COPCOM_01967 [Coprococcus comes ATCC 27758]
gi|225207737|gb|EEG90091.1| hypothetical protein COPCOM_01967 [Coprococcus comes ATCC 27758]
Length = 160
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 89/154 (57%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T G K++ EL + +R + I EAR GDLSENAEY AAK+ Q E
Sbjct: 3 AKKTLLTYTGLKKLEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ AEV+ + D I G TV + +K ++ +Q+VG EA+ G +S
Sbjct: 63 RIEELEKILKNAEVVVEDDVDLDTINIGCTVDVYDKEFEEEIVFQLVGSTEANSLEGKIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ +ALIGK++GD+++V G YE+L++
Sbjct: 123 NESPVGKALIGKKVGDVVAVETQAGVIEYEVLKI 156
>gi|86159099|ref|YP_465884.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775610|gb|ABC82447.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-C]
Length = 163
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +GF ++ E E+RPRI+ + A A GD SENAEY K+ + R+
Sbjct: 7 YITPEGFRRLAAEHTRIWTEQRPRIVAEVEAAAALGDRSENAEYIYGKKKLRELDRRLRF 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V++ R FGA V++ E+ G ++ Y++VG E DV +GL+S+ +P
Sbjct: 67 LSEKMDSLSVVEPRAHPDGRAFFGAWVTV-EQEDGQERRYRLVGPDEFDVSAGLISVDAP 125
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ RAL+GK GD++ V+ P G + +++V W
Sbjct: 126 LGRALLGKREGDVVVVHRPAGMVEFTVVEVSW 157
>gi|332686024|ref|YP_004455798.1| transcription elongation factor GreA [Melissococcus plutonius ATCC
35311]
gi|332370033|dbj|BAK20989.1| transcription elongation factor GreA [Melissococcus plutonius ATCC
35311]
Length = 157
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K++QEL + +R I++ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVFPMTQEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LEN+I A++ID + D I+ G TV E G+++ Y IVG EAD SG
Sbjct: 61 EGRITTLENMIRFAQIIDNDGVDEDEISIGKTVVFTELPDGEEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK LG+ + + PGG+ ++++V
Sbjct: 121 ISNDSPIAQALIGKHLGEEVIIETPGGDMKVKVIRVS 157
>gi|254480189|ref|ZP_05093437.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2148]
gi|214039751|gb|EEB80410.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2148]
Length = 165
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G ++ EL + ERP I + EA GD SEN +Y K + R+
Sbjct: 14 YITPEGEKALRDELHQLWKVERPVITNTVHEAAKNGDRSENGDYIYGKRRLREIDSRVRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + EV++ S +I FGA V+L E G + ++IVG E ++++G +S+ SP
Sbjct: 74 LNKRLDELEVVERSPDDTSKIRFGAWVTL-ETEDGQEHRWRIVGPDEFELKTGKLSMDSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+AR+++GK L D + V +P GE+ Y ++ + +
Sbjct: 133 MARSMLGKGLDDEVVVQSPSGEQVYYVVGIEY 164
>gi|90020882|ref|YP_526709.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40]
gi|89950482|gb|ABD80497.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40]
Length = 157
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 79/156 (50%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G ++ EL + ERP + K +S A + GD SENA+YQ K+ +
Sbjct: 1 MRTPLITPQGLKDLKAELDELWRVERPEVTKKVSWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L I +V++ ++ FGA V + + G+ ++IVG E + +S
Sbjct: 61 RVRYLRKCIENLKVVEYHPDQEGKVFFGAWVEVEN-DEGEVLTFRIVGYDEIFNRKNYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I +P+ARAL+ KE+ D V G+ T+ I + +
Sbjct: 120 IDAPMARALLKKEVDDEAVVRTEAGKTTWYINAIRY 155
>gi|313205435|ref|YP_004044092.1| transcription elongation factor grea [Paludibacter propionicigenes
WB4]
gi|312444751|gb|ADQ81107.1| transcription elongation factor GreA [Paludibacter propionicigenes
WB4]
Length = 151
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 95/150 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G+ K+ +EL + +RP I K I EAR GDLSENAEY AAKE Q + E R++ L
Sbjct: 1 MTAEGYRKLVEELNELESVQRPAISKQIGEARDKGDLSENAEYDAAKEAQGMLEMRISNL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+++I A +ID S ++ + + V + + +Y IV + EA+ + G +S+++PI
Sbjct: 61 KDMIASARMIDESKINTNEVQILTRVKIKNTKTNQLMSYMIVSESEANFKEGKLSVTTPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
A+ L+GK++G+ +V+ P G +E++++
Sbjct: 121 AKGLLGKKVGERATVSVPSGMLEFEVMEIS 150
>gi|221633065|ref|YP_002522290.1| transcription elongation factor greA [Thermomicrobium roseum DSM
5159]
gi|254799575|sp|B9L0L0|GREA_THERP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|221157000|gb|ACM06127.1| transcription elongation factor greA [Thermomicrobium roseum DSM
5159]
Length = 156
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 3/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++IP+T +G + ++QE + + RP I + I EAR +GD+ ENA Y AAK Q EGR
Sbjct: 4 ERIPITREGLEALRQEYEYLVKHRRPEIARVIQEAREHGDIRENAAYDAAKHDQAFIEGR 63
Query: 63 MAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ E+E ++ R E+I+ + + G+TV++ + G+ + Y IVG EA +G +S
Sbjct: 64 IREIEELLKRVELIEQPTDGDRSVVRVGSTVTI--EIDGEIETYTIVGAIEAKPSAGRIS 121
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ RAL+G G+I+ + P G I++V
Sbjct: 122 NESPVGRALLGHRAGEIVPIETPNGTLMARIIEVQ 156
>gi|333029629|ref|ZP_08457690.1| transcription elongation factor GreA [Bacteroides coprosuis DSM
18011]
gi|332740226|gb|EGJ70708.1| transcription elongation factor GreA [Bacteroides coprosuis DSM
18011]
Length = 154
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/151 (39%), Positives = 94/151 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ G++ + +ELR + +RP I + I+EAR GDLSENAEY AAKE Q + E ++
Sbjct: 3 YMSESGYNDLMEELRELETVQRPEISRQIAEARDKGDLSENAEYDAAKEAQGMLEMKINR 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ II A +ID S +S D + TV L +G K Y IV + EAD++ G +++S+P
Sbjct: 63 LKLIIADARIIDESKLSTDSVQILNTVELKNVKNGKKMKYTIVSESEADLRKGKIAVSTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+GK++GD+ + P G T E++ +
Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGMITLEVVDIS 153
>gi|262369479|ref|ZP_06062807.1| transcription elongation factor and transcript cleavage
[Acinetobacter johnsonii SH046]
gi|262315547|gb|EEY96586.1| transcription elongation factor and transcript cleavage
[Acinetobacter johnsonii SH046]
Length = 157
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 86/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++ +T++G+ ++Q EL ++ERP I K +S A + GD SENA+Y K +
Sbjct: 1 MNRKLLTAEGYQRLQDELNDLVRKERPEITKIVSWAASLGDRSENADYIYNKRKLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + A ++ S + FGA V L + G+ ++IVGD E + +S
Sbjct: 61 RIRYLTKLFEVAYKVEYSPEQDGKAYFGAWVELEN-DEGEIIKFRIVGDDEIYGRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SPIA+A +GK + D I V+ P G+K + I ++ +
Sbjct: 120 LQSPIAKACLGKSVDDEIQVHTPTGKKNWYIAKIFY 155
>gi|73666717|ref|YP_302733.1| transcription elongation factor GreA [Ehrlichia canis str. Jake]
gi|72393858|gb|AAZ68135.1| transcription elongation factor GreA [Ehrlichia canis str. Jake]
Length = 170
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 74/163 (45%), Positives = 114/163 (69%), Gaps = 6/163 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ P+T GF+K++ E + ERP+IIK+ISEAR GDLSENAEY AA+E Q L E
Sbjct: 9 MNERFPITKSGFEKLELE-LESLKHERPKIIKSISEARELGDLSENAEYHAARERQGLIE 67
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSG--DKKNYQIVGDQEADVQ 116
++ ELE+ +RAEVID+S +SGD + FGATV+ + ++ +G D+ Y+IVG+ E D+
Sbjct: 68 SKIMELESKRSRAEVIDVSNLSGDTVMFGATVTMSIYDEQTGNTDEVVYKIVGEYEVDIS 127
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
++SI SP+ +L+GK+ GD++ V P G+ Y+I+++ +I
Sbjct: 128 KQMISIKSPLVLSLLGKKEGDVVEVRTPKGDYKIYKIIKIEFI 170
>gi|295093556|emb|CBK82647.1| transcription elongation factor GreA [Coprococcus sp. ART55/1]
Length = 161
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K VT G KI++EL+ + +R I I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MAEKKNVVTYSGLKKIEEELQNLKVNKRREIAAKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ +LE ++ EV+D + + G V + + +K Y IVG +AD+ +
Sbjct: 61 EARIEQLEAMLKNIEVVDEDEVDTGVVGIGCKVVVYDYEFDEKIEYDIVGSSQADIMNNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL G ++G+ + V AP GE Y +L +
Sbjct: 121 ISDESPVGMALKGAKVGEEVLVEAPDGEFKYRVLDIK 157
>gi|312898247|ref|ZP_07757638.1| transcription elongation factor GreA [Megasphaera micronuciformis
F0359]
gi|310620744|gb|EFQ04313.1| transcription elongation factor GreA [Megasphaera micronuciformis
F0359]
Length = 161
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 4/157 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T+ G +K+++EL + R + + I EA A GDLSEN+EY AK Q E
Sbjct: 1 MSNETLITADGLEKLKEELNELKSVRRIAVSQRIKEAIALGDLSENSEYDDAKNEQAFIE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELEN I A++I+ ST ++ G+ V L + + ++ Y +VG EAD + +
Sbjct: 61 GRIVELENKIRTAKIIEESTDDVAKVRLGSKVILEDVETKERFEYTVVGTAEADPFNNRI 120
Query: 121 SISSPIARALIGKELGDI----ISVNAPGGEKTYEIL 153
S SP+ A++G+ + +SV AP GE Y+IL
Sbjct: 121 SNESPVGAAILGQNVDKENPVIVSVKAPAGEVQYKIL 157
>gi|149911350|ref|ZP_01899970.1| transcription elongation factor GreB [Moritella sp. PE36]
gi|149805590|gb|EDM65593.1| transcription elongation factor GreB [Moritella sp. PE36]
Length = 161
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G++ + + L++ ++ERPR+ K +S A + GD S+NA+Y+ K L +
Sbjct: 1 MAISNLITRVGWETLDKRLKFLWKQERPRVTKVVSWAASLGDRSDNADYKENKHLLRTID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ L + E++D S + FGA L + ++G +IVG E D + V
Sbjct: 61 REIRFLVKRLEVLEIVDYSPQQDGTVYFGAYAELED-DNGTVIQCRIVGRDELDSKRNFV 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++ SP+A+ALIGK++ D V+ P G KT+ I ++ +
Sbjct: 120 TVDSPMAKALIGKQVDDEAIVHTPAGSKTWYINKIQY 156
>gi|328952713|ref|YP_004370047.1| GreA/GreB family elongation factor [Desulfobacca acetoxidans DSM
11109]
gi|328453037|gb|AEB08866.1| GreA/GreB family elongation factor [Desulfobacca acetoxidans DSM
11109]
Length = 159
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 94/155 (60%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K+ +T +G+ K+ +EL+ ++ RPRI++ + EA A G L +N +Y A+ Q +
Sbjct: 1 MPKVILTQEGYRKLLRELKHLRRIVRPRILEDVMEAAADGRLEKNDQYWEARSRQVQVDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ L+ II ++EV+ S ++ ++ F V + + + + +V EADV+ G +S
Sbjct: 61 QIHHLQEIIAQSEVLVGSNLTASQVRFNCRVKICNVITQEISIFHLVSSIEADVRQGHLS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
I SP+ +AL+GK++G+ I N PGG + Y++L++
Sbjct: 121 IESPLGQALLGKKVGERIGFNPPGGPRWYQVLEIQ 155
>gi|292670844|ref|ZP_06604270.1| transcription elongation factor GreA [Selenomonas noxia ATCC 43541]
gi|292647465|gb|EFF65437.1| transcription elongation factor GreA [Selenomonas noxia ATCC 43541]
Length = 156
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K + +T G++K+ ++L + + R + + + A A GDLSEN+EY AK Q
Sbjct: 1 MTEKKVMLTEDGYNKLVEKLDYLKSVRRIEVAERLKAAIALGDLSENSEYDDAKNEQAFL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG + ELE I +++I G + G+ V + + +++ + IVG EAD G
Sbjct: 61 EGEIQELETKIRNSDII--KAGDGKSVTMGSRVKVKDLEFDEEETFLIVGSTEADPDEGK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL+G+++ +I VNAP G Y+I+ +
Sbjct: 119 ISNESPLGMALLGQKINRVIKVNAPAGIIQYKIIDIK 155
>gi|237746721|ref|ZP_04577201.1| transcription elongation factor and transcript cleavage
[Oxalobacter formigenes HOxBLS]
gi|229378072|gb|EEO28163.1| transcription elongation factor and transcript cleavage
[Oxalobacter formigenes HOxBLS]
Length = 184
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G K++ EL ERP++++ +S A + GD SEN +Y K + R+
Sbjct: 27 KNYITPAGLKKLKDELLELIDTERPQVVQTVSWAASNGDRSENGDYIYGKRRLREIDRRI 86
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I AE D S G D+I FGATV+ E+ +G++ IVG E D G +S
Sbjct: 87 RFLIKRIEAAEEFDPSVHYGNDQIFFGATVTY-ERQNGEENTVTIVGIDEFDPLQGKISW 145
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+AR LI GD ++++ P G + IL+V +
Sbjct: 146 ISPMARTLIKAHEGDTVTLHTPAGIEELVILEVSY 180
>gi|261377902|ref|ZP_05982475.1| transcription elongation factor GreB [Neisseria cinerea ATCC 14685]
gi|269145757|gb|EEZ72175.1| transcription elongation factor GreB [Neisseria cinerea ATCC 14685]
Length = 163
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+
Sbjct: 6 KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D + D++ F ATV L+ + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFSATVGLL-RGDGREQTVKIVGVDEIDTAQNKISW 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LI GD + +N P G + EIL V +I
Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|329769158|ref|ZP_08260578.1| transcription elongation factor greA [Gemella sanguinis M325]
gi|328839377|gb|EGF88955.1| transcription elongation factor greA [Gemella sanguinis M325]
Length = 162
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 96/156 (61%), Gaps = 4/156 (2%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ +T +G+D++ +EL ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+
Sbjct: 8 EYQMTQEGYDQLVEELEHYKKVKRPEVIEKIKVARSFGDLSENSEYDAAKDEQGFIEQRI 67
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E +I A +I++ S I G TV+ E +G + Y+IVG EA+ +S
Sbjct: 68 LEMEQMIRYAVIIELDEKS-SAIRLGNTVTYQELPNGATETYKIVGSAEANPFEYKISNE 126
Query: 124 SPIARALIGKELGDIISVNAPGGE---KTYEILQVL 156
SP+A+AL+GKE+GD+ V+ P G +IL+V
Sbjct: 127 SPVAQALLGKEVGDVAKVSLPTGPEDSMEIKILEVE 162
>gi|298369204|ref|ZP_06980522.1| transcription elongation factor GreB [Neisseria sp. oral taxon 014
str. F0314]
gi|298283207|gb|EFI24694.1| transcription elongation factor GreB [Neisseria sp. oral taxon 014
str. F0314]
Length = 163
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+
Sbjct: 6 KNYITPVGWQALKDELYRLVHKERPEIVQVVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D +++ FGATV L+ + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLEAAVVVDPEQREPTEQVFFGATVCLL-RGDGSEQTVRIVGADEIDTAQNKISW 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LI GD + +N P G + EIL V +I
Sbjct: 125 ISPLARCLIKAREGDEVVLNGPEGREEIEILSVEYI 160
>gi|320528378|ref|ZP_08029540.1| putative transcription elongation factor GreA [Solobacterium moorei
F0204]
gi|320131292|gb|EFW23860.1| putative transcription elongation factor GreA [Solobacterium moorei
F0204]
Length = 158
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 87/155 (56%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K +T +G K+Q E R + + ++EARA GDLSENA+Y AA++ Q E R
Sbjct: 5 NKTYLTEEGLKKLQDEYYNLVHVVREEVKQELAEARAQGDLSENADYDAARDEQAKVEAR 64
Query: 63 MAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+A LE ++ E+ID + G++V+L ++ ++ Y IVG E+D +G +S
Sbjct: 65 IATLEYMLRNYELIDTKKAGKKSAVHIGSSVTLFFNDTKEEVTYNIVGSTESDPLNGRLS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+P+A+A++ ++GD+ V T EI+++
Sbjct: 125 NETPLAQAILDHKVGDVCEVRV-ANPYTVEIIKIK 158
>gi|294675384|ref|YP_003576000.1| transcription elongation factor GreA family protein [Prevotella
ruminicola 23]
gi|294473225|gb|ADE82614.1| transcription elongation factor GreA family protein [Prevotella
ruminicola 23]
Length = 155
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 56/151 (37%), Positives = 89/151 (58%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ +
Sbjct: 3 YMSQEGYDKLIAELQRLEGVERPKASAAIAEAREKGDLSENSEYDAAKEAQAHLEDKINQ 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I A+VID S +S D + + V + + K Y IV + EA+++ G +SI +P
Sbjct: 63 LKMTIAEAKVIDTSRLSTDSVQILSKVEMTNLTNKAKMTYTIVSESEANLREGKISIQTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ ++GD + V P G I ++
Sbjct: 123 IAQGLLNHKVGDEVEVKIPRGTIKLRIDKIT 153
>gi|291460291|ref|ZP_06599681.1| transcription elongation factor GreA [Oribacterium sp. oral taxon
078 str. F0262]
gi|291417046|gb|EFE90765.1| transcription elongation factor GreA [Oribacterium sp. oral taxon
078 str. F0262]
Length = 162
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 57/158 (36%), Positives = 81/158 (51%), Gaps = 4/158 (2%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + K +T G +K + EL + R I I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MAEGKKNLLTRAGLNKYEAELHDLKVNRRQEIAGKIKEAREQGDLSENAEYDAAKDEQRE 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ +LE ++ AEV+D + I G V L++K ++ Y IVG EA+ G
Sbjct: 61 IEERIVQLELLLKNAEVVDDTEE--GSINIGCHVKLLDKEFDEEVEYTIVGSTEANSLQG 118
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +AL+ GD + V G + +L V
Sbjct: 119 KISNESPVGKALLHHREGDTVEVETQNGVLQFTVLSVE 156
>gi|260549248|ref|ZP_05823468.1| transcription elongation factor and transcript cleavage
[Acinetobacter sp. RUH2624]
gi|260407654|gb|EEX01127.1| transcription elongation factor and transcript cleavage
[Acinetobacter sp. RUH2624]
Length = 164
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L +
Sbjct: 1 MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120
R+ L + +++D + ++ FGA V + + G++K +IVG E D +
Sbjct: 61 RVRYLGKRLEELKIVDYAPEQEGKVYFGAWVEIENEE-GEQKTLRIVGIDEIYDHHPQHI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ D + V+ P G+K + I + +
Sbjct: 120 SIESPMARALLSKQVDDEVEVHTPLGKKLWYINAIRY 156
>gi|108758975|ref|YP_631387.1| transcription elongation factor GreB [Myxococcus xanthus DK 1622]
gi|108462855|gb|ABF88040.1| transcription elongation factor GreB [Myxococcus xanthus DK 1622]
Length = 176
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G +++ +EL EERP++ +S A A GD SENAEY K+ + R+
Sbjct: 24 YLTRAGAERLHRELVHLLNEERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRRLRF 83
Query: 66 LENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L+ + A ++ + R+ FGATVSL +++ G + YQIVG E D G +S+ S
Sbjct: 84 LQKRLDTATIVTPAEQTDRSRVFFGATVSLEDEDGG-RSTYQIVGSDEIDASGGRISVES 142
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ RAL+ K +GD + V P G+ ++ + +
Sbjct: 143 PMGRALLRKAVGDSVEVRRPRGDIELTVVDIRY 175
>gi|291547775|emb|CBL20883.1| transcription elongation factor GreA [Ruminococcus sp. SR1/5]
Length = 161
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 83/155 (53%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T G K++ EL + +R + I EAR GDLSENAEY AAK+ Q E
Sbjct: 4 AKKNLLTYAGLRKLEDELHDLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEA 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E I+ AEV+ + DRI+ G V + + + +IVG EA+ G +S
Sbjct: 64 RIEEIEKILKNAEVVVEDEVDLDRISVGCKVKVHDYEFEEDMELKIVGSTEANSLEGKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +ALIG DI+ V P G Y++L++
Sbjct: 124 NESPVGKALIGAHTNDIVEVEMPSGIMKYKVLEIQ 158
>gi|225016228|ref|ZP_03705420.1| hypothetical protein CLOSTMETH_00131 [Clostridium methylpentosum
DSM 5476]
gi|224950986|gb|EEG32195.1| hypothetical protein CLOSTMETH_00131 [Clostridium methylpentosum
DSM 5476]
Length = 163
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 86/154 (55%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ +T +G K+++EL + +R + I A ++GDLSEN+EY AK Q + E R
Sbjct: 9 KQTILTGEGLSKLEEELEELKTVKRQEVAAKIKVALSFGDLSENSEYDEAKNEQAMVEAR 68
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A++E ++ V+D S + D ++ G+ V L + + Y IVG EAD G +S
Sbjct: 69 IAQVEAMLKNVHVLDDSDLPTDIVSIGSKVLLKDIEFDEDVEYYIVGSTEADPSEGKISD 128
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+G +GD + V P G +E+L++
Sbjct: 129 ESPVGKALLGHRVGDRVEVEVPSGMIEFEVLEIS 162
>gi|271502327|ref|YP_003335353.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
gi|270345882|gb|ACZ78647.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
Length = 160
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G++ + QEL + +E RP I + ++ A + GD SENA+Y K L + R+ L
Sbjct: 6 ITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDRRVRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+D S ++ FGA V + + K+ ++IVG E + +SI +P+
Sbjct: 66 RKRLQVVRVVDYSPQQDGKVFFGAWVEVENEEGEVKR-FRIVGPDEIYGRKDYISIDAPM 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K + + V P G + + + ++ +
Sbjct: 125 ARALLKKAVDEEAVVTTPTGPRVWYVNKIDY 155
>gi|258646084|ref|ZP_05733553.1| transcription elongation factor GreA [Dialister invisus DSM 15470]
gi|260403459|gb|EEW97006.1| transcription elongation factor GreA [Dialister invisus DSM 15470]
Length = 160
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 57/151 (37%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +K+Q+EL + + R + + + EA A GDLSEN+EY AK Q+ EGR+ EL
Sbjct: 9 VTKEGLEKLQKELDELRTKTRGEVAQRLKEAIAMGDLSENSEYDDAKNQQSFVEGRIKEL 68
Query: 67 ENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E I AE+ID R+ G TV++ ++ +IVG E+D G +S SP
Sbjct: 69 EQQIRTAEIIDSGKKGRKSRVDVGMTVTIEALEDHVEETVKIVGSTESDPFEGKISNESP 128
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ RAL+G + GDI+ AP G Y+++++
Sbjct: 129 VGRALMGAKAGDIVEAEAPSGVVKYKVIKIK 159
>gi|326318293|ref|YP_004235965.1| transcription elongation factor GreB [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375129|gb|ADX47398.1| transcription elongation factor GreB [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 189
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL ERP++++ + A + GD SEN +Y K+ + R+
Sbjct: 30 KNYMTPAGYARLRSELLELMDNERPKVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRI 89
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S G D++ FGATV+ V+ + ++ I+G E D VS
Sbjct: 90 RFLTKRLDMAEVVDPSLHHGSDQVFFGATVTYVD-DLDVERTVTILGIDEVDSSQSQVSW 148
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ GD + + PGG +T EIL+V +
Sbjct: 149 VSPVARALLKAREGDEVRLGTPGGLRTLEILRVEY 183
>gi|299144545|ref|ZP_07037624.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298517633|gb|EFI41373.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 158
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K I T++G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q
Sbjct: 1 MVEKDIFFTAEGLEKIESEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ +LE ++ A+VI + ++ D + G+TV + + + G+++ + IVG EAD G
Sbjct: 61 EERIVKLETMVRNAKVISETDLNTDVVNIGSTVKVKDLSDGEEEEFLIVGSAEADPLEGR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ LIG ++G++ V P G YE++ +
Sbjct: 121 ISNESPVGGKLIGLKIGEVAEVEVPDGIIKYEVVGIS 157
>gi|126642687|ref|YP_001085671.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
17978]
gi|169794997|ref|YP_001712790.1| transcription elongation factor and transcript cleavage
[Acinetobacter baumannii AYE]
gi|184159217|ref|YP_001847556.1| transcription elongation factor [Acinetobacter baumannii ACICU]
gi|213158338|ref|YP_002320389.1| transcription elongation factor GreB [Acinetobacter baumannii
AB0057]
gi|215482547|ref|YP_002324737.1| transcription elongation factor GreB [Acinetobacter baumannii
AB307-0294]
gi|260556477|ref|ZP_05828695.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
19606]
gi|301346025|ref|ZP_07226766.1| transcription elongation factor GreB [Acinetobacter baumannii
AB056]
gi|301511853|ref|ZP_07237090.1| transcription elongation factor GreB [Acinetobacter baumannii
AB058]
gi|301594320|ref|ZP_07239328.1| transcription elongation factor GreB [Acinetobacter baumannii
AB059]
gi|332855917|ref|ZP_08436091.1| transcription elongation factor GreB [Acinetobacter baumannii
6013150]
gi|332867120|ref|ZP_08437399.1| transcription elongation factor GreB [Acinetobacter baumannii
6013113]
gi|332876188|ref|ZP_08443967.1| transcription elongation factor GreB [Acinetobacter baumannii
6014059]
gi|126388571|gb|ABO13069.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
17978]
gi|169147924|emb|CAM85787.1| transcription elongation factor and transcript cleavage
[Acinetobacter baumannii AYE]
gi|183210811|gb|ACC58209.1| Transcription elongation factor [Acinetobacter baumannii ACICU]
gi|213057498|gb|ACJ42400.1| transcription elongation factor GreB [Acinetobacter baumannii
AB0057]
gi|213986627|gb|ACJ56926.1| transcription elongation factor GreB [Acinetobacter baumannii
AB307-0294]
gi|260409736|gb|EEX03036.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
19606]
gi|322509131|gb|ADX04585.1| Transcription elongation factor GreB [Acinetobacter baumannii
1656-2]
gi|323519159|gb|ADX93540.1| transcription elongation factor [Acinetobacter baumannii
TCDC-AB0715]
gi|332727236|gb|EGJ58685.1| transcription elongation factor GreB [Acinetobacter baumannii
6013150]
gi|332734193|gb|EGJ65323.1| transcription elongation factor GreB [Acinetobacter baumannii
6013113]
gi|332735622|gb|EGJ66670.1| transcription elongation factor GreB [Acinetobacter baumannii
6014059]
Length = 164
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L +
Sbjct: 1 MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLV 120
R+ L + +++D S ++ FGA V + + G++K +IVG D+ D +
Sbjct: 61 RVRYLGKRLEELKIVDYSPEQEGKVYFGAWVDIENEE-GEQKTLRIVGVDEIYDHHPQHI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D + V+ P G+K + I + +
Sbjct: 120 SIESPMARALLSKEVDDEVEVHTPLGKKLWYINAIRY 156
>gi|149184390|ref|ZP_01862708.1| transcription elongation factor [Erythrobacter sp. SD-21]
gi|148831710|gb|EDL50143.1| transcription elongation factor [Erythrobacter sp. SD-21]
Length = 159
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G+ ++ +ERP I++ +S A GD SEN +Y ++ + +
Sbjct: 7 PITPAGYAAMKARYDHLLGKERPEIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRELGH 66
Query: 66 LENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + A VI S R FGATV+L +++ +K +VGD E D +G + SS
Sbjct: 67 LARRMKAARVIVPSDQPDKSRAFFGATVTLADEDDN-EKTVTLVGDDEQDASAGRIGWSS 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL G +GD+ +V PGGE+ +EI+ + +
Sbjct: 126 PLARALKGAGVGDLRTVRLPGGEREWEIVSIDY 158
>gi|116514426|ref|YP_813332.1| transcription elongation factor [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|116093741|gb|ABJ58894.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
Length = 162
Score = 141 bits (357), Expect = 3e-32, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 93/154 (60%), Gaps = 1/154 (0%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T++G ++++EL+ + +RP+I++ + AR+YGDLSEN+EY AAK+ Q
Sbjct: 1 MPEKTYEMTAEGKKQLEEELQTLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ + + A ++D + D ++ G TV++ E + + Y+IVG ++D G
Sbjct: 61 EERINAISEQLKYAVIVDTVAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
VS SPI +AL+G + G+ + +N +Y+++
Sbjct: 121 VSNESPIGKALLGHKKGETVKINVDSANVSYDVV 154
>gi|329894420|ref|ZP_08270267.1| Transcription elongation factor GreB [gamma proteobacterium
IMCC3088]
gi|328923067|gb|EGG30391.1| Transcription elongation factor GreB [gamma proteobacterium
IMCC3088]
Length = 171
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T+ G ++ EL + ERP++ A+ EA GD SEN +Y K+ + R+
Sbjct: 14 YITAAGAAALKSELDELWRVERPKVTDAVREAAKNGDRSENGDYIYGKKRLREIDSRVRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + +V+ + DRI FGA+V+L E+ G + IVG E D ++G +SI +P
Sbjct: 74 LTKRLESLKVVSAAPSEPDRIFFGASVTL-EEEDGSLQTLHIVGADEIDPKTGKISIDAP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I+RAL+GK + D I AP G + ++ V +
Sbjct: 133 ISRALLGKRIDDEIEYQAPAGRQVRYVIDVNY 164
>gi|301628310|ref|XP_002943300.1| PREDICTED: transcription elongation factor greB-like [Xenopus
(Silurana) tropicalis]
Length = 154
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 82/152 (53%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G + ++ EL + ERP+++ +S A GD SEN +Y K+ + R+ L
Sbjct: 1 MTPAGLESLRSELNHLSRSERPKVVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRIRFL 60
Query: 67 ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
I A+V+D + G +R+ FGATV+ + +++ +VG EAD++ +S SP
Sbjct: 61 TKRIESAKVVDPAEQQGLERVFFGATVTYANQRD-EERTVTLVGVDEADMEQSKISWRSP 119
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL +GD + + P G + E++ + +
Sbjct: 120 VARALFKAGIGDEVLLRTPAGTERLEVIAIAY 151
>gi|225572778|ref|ZP_03781533.1| hypothetical protein RUMHYD_00969 [Blautia hydrogenotrophica DSM
10507]
gi|225039835|gb|EEG50081.1| hypothetical protein RUMHYD_00969 [Blautia hydrogenotrophica DSM
10507]
Length = 160
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 88/154 (57%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K +T G +++EL + +R + + I EAR GDLSENAEY AAK+ Q E R
Sbjct: 4 KKNLLTYAGLKNLEEELHDLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+E I+ AEV+ + D+I+ G V L + ++ ++IVG EA+ G +S
Sbjct: 64 IEEIEKILKNAEVVVEDEVDLDKISVGCKVKLYDYEYEEEIEFKIVGSTEANSLQGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +ALIG ++ D++ V P G Y++L++
Sbjct: 124 ESPVGKALIGAKVDDVVKVEMPAGMVEYKVLEIQ 157
>gi|329121808|ref|ZP_08250424.1| transcription elongation factor GreA [Dialister micraerophilus DSM
19965]
gi|327468081|gb|EGF13569.1| transcription elongation factor GreA [Dialister micraerophilus DSM
19965]
Length = 162
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + VT +G +K+Q+EL + ++R + + + EA + GDLSEN+EY AK Q+ EG
Sbjct: 4 MQRTLVTREGLEKMQKELDELRSKKRGEVAQRLKEAISMGDLSENSEYDDAKNEQSFVEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I A +I G R+ +TV++ + + G ++ IVG E+D G +S
Sbjct: 64 RILELETKIRTAVLI-SQKKKGGRVDLASTVTIQDMSDGSEETVTIVGSTESDPFEGKIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP RAL+G +LGDI+ V+AP G Y+I +
Sbjct: 123 NESPAGRALMGSKLGDIVEVDAPTGIIKYKITGI 156
>gi|302672112|ref|YP_003832072.1| transcription elongation factor GreA/GreB1 [Butyrivibrio
proteoclasticus B316]
gi|302396585|gb|ADL35490.1| transcription elongation factor GreA/GreB1 [Butyrivibrio
proteoclasticus B316]
Length = 161
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 84/154 (54%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K +T +G K + EL + +R + + I EAR GDLSENAEY AAK+ Q E R
Sbjct: 4 KKNILTYEGLKKYEDELHELKVVKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LE I+ AEV+ + ++I+ G V + + ++ Y+IVG EA+ G +S
Sbjct: 64 IEALEKILKNAEVVVEEDVDLNKISIGCKVKIKDLEFDEELEYKIVGSSEANSLKGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +ALIG + G +SV G Y++L +
Sbjct: 124 ESPVGKALIGAKKGQTVSVETQAGVIKYKVLSIE 157
>gi|313892199|ref|ZP_07825792.1| transcription elongation factor GreA [Dialister microaerophilus
UPII 345-E]
gi|313119337|gb|EFR42536.1| transcription elongation factor GreA [Dialister microaerophilus
UPII 345-E]
Length = 162
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 1/154 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + VT +G +K+Q+EL + ++R + + + EA + GDLSEN+EY AK Q+ EG
Sbjct: 4 MQRTLVTREGLEKMQRELDELRSKKRGEVAQRLKEAISMGDLSENSEYDDAKNEQSFVEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I A +I G R+ +TV++ + + G ++ IVG E+D G +S
Sbjct: 64 RILELETKIRTAVLI-SQKKKGGRVDLASTVTIQDMSDGSEETVTIVGSTESDPFEGKIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP RAL+G +LGDI+ V+AP G Y+I +
Sbjct: 123 NESPAGRALMGSKLGDIVEVDAPTGIIKYKITGI 156
>gi|241888529|ref|ZP_04775837.1| transcription elongation factor GreA [Gemella haemolysans ATCC
10379]
gi|241864796|gb|EER69170.1| transcription elongation factor GreA [Gemella haemolysans ATCC
10379]
Length = 162
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 4/156 (2%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ +T +G+DK+ +EL ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+
Sbjct: 8 EYQMTQEGYDKLVEELEHYKKVKRPEVIEKIKIARSFGDLSENSEYDAAKDEQGFIEQRI 67
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E +I A +I++ S I G V+ E G + Y+IVG EA+ +S
Sbjct: 68 LEMEQMIRYAVIIELDGKS-STIRLGNKVTYQELPDGLTETYKIVGSAEANPFEFKISNE 126
Query: 124 SPIARALIGKELGDIISVNAPGGE---KTYEILQVL 156
SP+A+AL+GKE+GD+ V+ P G +IL V
Sbjct: 127 SPVAQALLGKEVGDVAKVSLPTGPEDSMDIKILAVE 162
>gi|226941107|ref|YP_002796181.1| transcription elongation factor GreB [Laribacter hongkongensis
HLHK9]
gi|226716034|gb|ACO75172.1| GreB [Laribacter hongkongensis HLHK9]
Length = 185
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 80/155 (51%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL ERP + + ++ A GD SEN +Y K + R+
Sbjct: 28 KNYLTPAGWQRMKDELYRLVNHERPEVTQVVNWAAGNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D D++ FGATV ++ + G ++ IVG E D+ G +S
Sbjct: 88 RFLTKRLEIAEVVDPERREATDQVFFGATVVML-RGDGSEQTVSIVGVDELDLSRGHISW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIAR L+ GD++ P GE+ EIL+V +
Sbjct: 147 ISPIARTLLKAREGDVVWFRGPDGEEEIEILEVRY 181
>gi|291551193|emb|CBL27455.1| transcription elongation factor GreA [Ruminococcus torques L2-14]
Length = 160
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 83/155 (53%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T G I+ EL + +R + I EAR GDLSENAEY AAK+ Q E
Sbjct: 4 AKKRLLTYAGLKAIEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEA 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ AEV+ + ++I G V + + ++ ++IVG EA+ G +S
Sbjct: 64 RIEELEAILKNAEVVVEDEVDLNKINVGCAVKVYDITFDEEMEFKIVGSTEANSLEGKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ALIGK++ D++ V G Y++L +
Sbjct: 124 NESPVGHALIGKKINDVVDVETQAGVIQYKVLDIK 158
>gi|114328469|ref|YP_745626.1| transcription elongation factor greB [Granulibacter bethesdensis
CGDNIH1]
gi|114316643|gb|ABI62703.1| transcription elongation factor greB [Granulibacter bethesdensis
CGDNIH1]
Length = 169
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+T G ++ EL+ +EERP+I++ +S A GD SEN +Y K+ + R+
Sbjct: 13 FYMTPVGHAQMVAELKQLMREERPKIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRVR 72
Query: 65 ELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L + A VID +T DRI FGATV+ + + + IVG EAD+ G +S+
Sbjct: 73 FLTKRLENAVVIDPATQPHKDRIYFGATVTYINA-ADETVQVTIVGADEADMALGRISLL 131
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A+AL+G GD ++V P + +IL V +
Sbjct: 132 SPVAKALLGASKGDEVTVITPVKTEILDILDVDY 165
>gi|254804573|ref|YP_003082794.1| Transcription elongation factor [Neisseria meningitidis alpha14]
gi|254668115|emb|CBA04682.1| Transcription elongation factor [Neisseria meningitidis alpha14]
Length = 163
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A GD SEN +Y K + R+
Sbjct: 6 KNYITPAGWQALKNELYRLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A VID + D++ F ATV L+ + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLEAAVVIDPELREATDQVFFSATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LI GD + +N P G + EIL V +I
Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|332995753|gb|AEF05808.1| transcription elongation factor GreB [Alteromonas sp. SN2]
Length = 159
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 82/157 (52%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G+ ++ QE E+RP I K ++ A GD SENA+Y K L +
Sbjct: 1 MKTKLITRAGYQRLVQEHDHLWFEKRPEITKIVTWAAGLGDRSENADYTFNKRLLRQIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120
R+ L ++ +++D S ++ FGA V + G+ K ++IVG +E D Q +
Sbjct: 61 RVRYLRKLLPELKIVDYSAEQEGKVFFGAWVEIENYE-GEVKRFRIVGPEEIYDDQKKYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+GK++ + V P G K + I + +
Sbjct: 120 SIDSPMARALLGKQIDEDFGVTTPDGFKLWYINSIKY 156
>gi|224826318|ref|ZP_03699420.1| transcription elongation factor GreB [Lutiella nitroferrum 2002]
gi|224601419|gb|EEG07600.1| transcription elongation factor GreB [Lutiella nitroferrum 2002]
Length = 185
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 78/156 (50%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T +G+ +++ EL ERP ++ ++ A + GD SEN +Y K +
Sbjct: 26 ATKNYLTPQGWQRLKNELYHLVHRERPEMVNVVNWAASNGDRSENGDYLYGKRRLREIDR 85
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + AEV+D T F + L+ + G ++ +IVG E D+ G +S
Sbjct: 86 RIRFLTKRLEIAEVVDPETRETTDQIFFSATVLILRGDGSEQLLRIVGVDEIDLPRGHIS 145
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIAR LI GD + P GE+T E+L+V +
Sbjct: 146 WISPIARCLIKAREGDEVVFRGPDGEETIEVLEVRY 181
>gi|239503414|ref|ZP_04662724.1| transcription elongation factor GreB [Acinetobacter baumannii
AB900]
Length = 164
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ K+L +
Sbjct: 1 MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120
R+ L + +++D S ++ FGA V + + G +K +IVG E D +
Sbjct: 61 RVRYLGKRLEELKIVDYSPEQEGKVYFGAWVDIENEE-GQQKTLRIVGVDEIYDHHPQHI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ KE+ D + V+ P G+K + I + +
Sbjct: 120 SIESPMARALLSKEVDDEVEVHTPLGKKLWYINAIRY 156
>gi|225075604|ref|ZP_03718803.1| hypothetical protein NEIFLAOT_00620 [Neisseria flavescens
NRL30031/H210]
gi|224953026|gb|EEG34235.1| hypothetical protein NEIFLAOT_00620 [Neisseria flavescens
NRL30031/H210]
Length = 163
Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 74/155 (47%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+
Sbjct: 6 KNYITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L + A V+D F + + + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLEAAVVVDPEAREATDQVFFSATVGLLRGDGREQTVKIVGVDEIDTAKNKISWI 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR+LI GD + ++ P G + EIL V +I
Sbjct: 126 SPLARSLIKAREGDEVVLDTPEGREVIEILSVEYI 160
>gi|116332834|ref|YP_794361.1| transcription elongation factor GreA [Lactobacillus brevis ATCC
367]
gi|116098181|gb|ABJ63330.1| transcription elongation factor GreA [Lactobacillus brevis ATCC
367]
Length = 160
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 51/151 (33%), Positives = 87/151 (57%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T+ G+ +Q ++ + +RP I ++EARA+GDLSENAEY AAK E ++
Sbjct: 9 PITAAGYQDLQAKIAALEA-DRPEKIAILAEARAHGDLSENAEYSAAKRDLRHLESQLRF 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+ S + D + G V++ + ++ YQ+VG QEAD+ +G ++ SP
Sbjct: 68 YTKQLQYAKVVAPS--NSDVVDLGKWVTVTFLDDHEQATYQLVGTQEADLAAGKITRVSP 125
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +AL+G GD ++++AP +I QV
Sbjct: 126 LGKALLGHHPGDTVTISAPHANYRVKINQVQ 156
>gi|192360004|ref|YP_001981507.1| transcription elongation factor GreB [Cellvibrio japonicus Ueda107]
gi|190686169|gb|ACE83847.1| transcription elongation factor GreB [Cellvibrio japonicus Ueda107]
Length = 157
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 47/156 (30%), Positives = 79/156 (50%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +GFD +Q+EL + ERP + K +S A + GD SENA+YQ K+ +
Sbjct: 1 MRTPLITRQGFDDLQKELDELWRVERPDVTKKVSWAASLGDRSENADYQYNKKRLREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L + +V++ ++ FGA V + + G +++VG E + +S
Sbjct: 61 RVRYLRKCLENLKVVEYRPEQEGKVFFGAWVEVEN-DEGKTLTFRVVGYDEIFNRKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARAL+ K + D V G T+ I + +
Sbjct: 120 IDSPMARALLKKAVDDEAIVATEAGTVTWYINSIWY 155
>gi|330993418|ref|ZP_08317353.1| Transcription elongation factor greB [Gluconacetobacter sp. SXCC-1]
gi|329759448|gb|EGG75957.1| Transcription elongation factor greB [Gluconacetobacter sp. SXCC-1]
Length = 178
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT G ++ EL ++ERP+I++ +S A GD SEN +YQ K + R+
Sbjct: 23 YVTPAGIAVMRAELNALLRDERPKIVEIVSWAAGNGDRSENGDYQYGKRRLREIDRRIRF 82
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L I A V+D + R+ FGATV+ V +++ I+G EAD+ +G +S+ S
Sbjct: 83 LTKRIDNAVVVDPAAQPQRGRVFFGATVTYV-TERDEERTVTILGVDEADMAAGQISLVS 141
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL+ +GD + + P GE+ E+L + +
Sbjct: 142 PVARALMRAAVGDEVRLATPRGEEMIEVLAISY 174
>gi|329767531|ref|ZP_08259054.1| transcription elongation factor greA [Gemella haemolysans M341]
gi|328835865|gb|EGF85587.1| transcription elongation factor greA [Gemella haemolysans M341]
Length = 162
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 61/156 (39%), Positives = 95/156 (60%), Gaps = 4/156 (2%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ +T +G+DK+ +EL + ++ +RP +I+ I AR++GDLSEN+EY AAK+ Q E R+
Sbjct: 8 EYQMTQEGYDKLVEELEYYKKVKRPEVIEKIKIARSFGDLSENSEYDAAKDEQGFIEQRI 67
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E +I A +I++ S I G TV+ E G + Y+IVG EA+ +S
Sbjct: 68 LEMEQMIRYAVIIELDEKS-SAIRLGNTVTYQELPDGLTETYKIVGSAEANPFEYKISNE 126
Query: 124 SPIARALIGKELGDIISVNAPGGE---KTYEILQVL 156
SP+A+AL+GKE+GD+ V+ P G +IL V
Sbjct: 127 SPVAQALLGKEVGDVAKVSLPTGPEDSMDIKILAVE 162
>gi|257893581|ref|ZP_05673234.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,408]
gi|260560508|ref|ZP_05832682.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium C68]
gi|261209025|ref|ZP_05923430.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium TC 6]
gi|289565163|ref|ZP_06445615.1| transcription elongation factor greA [Enterococcus faecium D344SRF]
gi|293553245|ref|ZP_06673882.1| transcription elongation factor GreA [Enterococcus faecium E1039]
gi|293563598|ref|ZP_06678044.1| transcription elongation factor GreA [Enterococcus faecium E1162]
gi|293569322|ref|ZP_06680620.1| transcription elongation factor GreA [Enterococcus faecium E1071]
gi|294615287|ref|ZP_06695163.1| transcription elongation factor GreA [Enterococcus faecium E1636]
gi|294619052|ref|ZP_06698547.1| transcription elongation factor GreA [Enterococcus faecium E1679]
gi|314939785|ref|ZP_07847005.1| transcription elongation factor GreA [Enterococcus faecium
TX0133a04]
gi|314942020|ref|ZP_07848880.1| transcription elongation factor GreA [Enterococcus faecium TX0133C]
gi|314950014|ref|ZP_07853307.1| transcription elongation factor GreA [Enterococcus faecium TX0082]
gi|314953536|ref|ZP_07856448.1| transcription elongation factor GreA [Enterococcus faecium TX0133A]
gi|314992151|ref|ZP_07857598.1| transcription elongation factor GreA [Enterococcus faecium TX0133B]
gi|314995129|ref|ZP_07860245.1| transcription elongation factor GreA [Enterococcus faecium
TX0133a01]
gi|257829960|gb|EEV56567.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,408]
gi|260073510|gb|EEW61838.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium C68]
gi|260077064|gb|EEW64786.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium TC 6]
gi|289162984|gb|EFD10832.1| transcription elongation factor greA [Enterococcus faecium D344SRF]
gi|291588028|gb|EFF19878.1| transcription elongation factor GreA [Enterococcus faecium E1071]
gi|291591845|gb|EFF23478.1| transcription elongation factor GreA [Enterococcus faecium E1636]
gi|291594713|gb|EFF26095.1| transcription elongation factor GreA [Enterococcus faecium E1679]
gi|291602655|gb|EFF32870.1| transcription elongation factor GreA [Enterococcus faecium E1039]
gi|291604448|gb|EFF33936.1| transcription elongation factor GreA [Enterococcus faecium E1162]
gi|313590620|gb|EFR69465.1| transcription elongation factor GreA [Enterococcus faecium
TX0133a01]
gi|313593292|gb|EFR72137.1| transcription elongation factor GreA [Enterococcus faecium TX0133B]
gi|313594459|gb|EFR73304.1| transcription elongation factor GreA [Enterococcus faecium TX0133A]
gi|313599197|gb|EFR78042.1| transcription elongation factor GreA [Enterococcus faecium TX0133C]
gi|313640925|gb|EFS05505.1| transcription elongation factor GreA [Enterococcus faecium
TX0133a04]
gi|313643661|gb|EFS08241.1| transcription elongation factor GreA [Enterococcus faecium TX0082]
Length = 159
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +EN+I A++ID + D ++ G TV+ +E GD++ Y IVG EAD SG
Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGDEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK D +++ PGG+ +I++V
Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKVE 157
>gi|312959745|ref|ZP_07774261.1| transcription elongation factor GreB [Pseudomonas fluorescens WH6]
gi|311285911|gb|EFQ64476.1| transcription elongation factor GreB [Pseudomonas fluorescens WH6]
Length = 157
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 2/158 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K+ +T +G + +++EL + +E+RP + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKL-ITKEGHEALKKELDYLWREKRPDTTRKVTWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V++ ++ FGA V + + G+ K ++IVG E + +
Sbjct: 60 RRVRYLRKRLEDMRVVEYMPEQEGKVFFGAWVDIENEK-GETKRFRIVGYDEIYDRMDYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SP+ARAL+ KE+ D V P GE + I + ++
Sbjct: 119 SIDSPMARALLRKEVDDEAIVQTPNGEVCWWITGIEYV 156
>gi|227890813|ref|ZP_04008618.1| transcription elongation factor [Lactobacillus salivarius ATCC
11741]
gi|301301189|ref|ZP_07207345.1| transcription elongation factor GreA [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|227867222|gb|EEJ74643.1| transcription elongation factor [Lactobacillus salivarius ATCC
11741]
gi|300851188|gb|EFK78916.1| transcription elongation factor GreA [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 156
Score = 141 bits (355), Expect = 5e-32, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 102/157 (64%), Gaps = 2/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MAEKTFPMTLEGKEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFM 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ E++N++ AE+ID ++ + +A G TV+ E + + + YQIVG EAD G
Sbjct: 61 EARIKEIQNMLNHAEIIDNKSIDENEVAVGKTVTFQE-DDDEPETYQIVGAAEADPFEGK 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA LIG +LGD++S++ PGG +I+ V
Sbjct: 120 ISNESPIASGLIGHKLGDVVSIDTPGGTMQVKIIDVK 156
>gi|261414657|ref|YP_003248340.1| transcription elongation factor GreA [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|261371113|gb|ACX73858.1| transcription elongation factor GreA [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 151
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 59/148 (39%), Positives = 90/148 (60%), Gaps = 2/148 (1%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG-RMAEL 66
T + +DK+ ++L + ERPR+++ + +ARA GDLSENAEY AAKE + M +L
Sbjct: 3 TQEAYDKLVKDLENLKNVERPRVLQELVDARAQGDLSENAEYHAAKERLASIDNIEMPKL 62
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ + RA+VI S D I FGAT++ + + YQ+V +EAD +G +S SPI
Sbjct: 63 QDQLARAQVIAFDANS-DTIKFGATITAKNLKTKREIVYQLVSPEEADALNGKISFKSPI 121
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
AL+GK+ GD + V P G+ +EI+
Sbjct: 122 GAALMGKKRGDTVEVVTPKGKNQFEIID 149
>gi|270291043|ref|ZP_06197266.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4]
gi|304385319|ref|ZP_07367664.1| transcription elongation factor GreA [Pediococcus acidilactici DSM
20284]
gi|270280439|gb|EFA26274.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4]
gi|304328526|gb|EFL95747.1| transcription elongation factor GreA [Pediococcus acidilactici DSM
20284]
Length = 154
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 61/151 (40%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+P+T G+ KIQQE+ ++ RP +IKA+++ARA GDLSENAEY AAK EGR+
Sbjct: 6 VPMTKTGYQKIQQEIADLKKT-RPGLIKALADARALGDLSENAEYSAAKRDLRRMEGRLR 64
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE I +++++ + +I G+ V+L + Y+IVG EADV VS S
Sbjct: 65 YLERQINYSKIVENT--DRTKIDLGSNVTLRFLDDDFTVTYEIVGKHEADVAQQKVSYQS 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ AL+ L D+++VNAP + EIL +
Sbjct: 123 PLGAALLHHHLHDVVTVNAPDEQYQVEILAI 153
>gi|239905833|ref|YP_002952572.1| transcription elongation factor GreA [Desulfovibrio magneticus
RS-1]
gi|259647640|sp|C4XLU8|GREA_DESMR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|239795697|dbj|BAH74686.1| transcription elongation factor GreA [Desulfovibrio magneticus
RS-1]
Length = 164
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 64/156 (41%), Positives = 105/156 (67%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ IP++ +GF + + R ++ERP +I AI EAR GDL ENA Y+AA+E Q + E
Sbjct: 1 MESIPISVEGFRR-LERELERLKKERPGVILAIKEAREEGDLRENAGYEAARERQGMLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +E+ ++R VID++T+ G+++ FGATV + + ++GD K Y ++G EA+ G +S
Sbjct: 60 RINYIESRMSRFNVIDLATLGGEQVIFGATVEIEDVDTGDVKKYTLLGPDEAEPSKGSIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+ AL+GK +GD I V+AP G+ YEI+ + +
Sbjct: 120 LLSPVGLALLGKFVGDEIVVDAPRGKINYEIVSIAF 155
>gi|313633191|gb|EFS00071.1| transcription elongation factor GreA [Listeria seeligeri FSL
N1-067]
Length = 133
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 48/131 (36%), Positives = 79/131 (60%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
+R +++ I AR++GDLSEN+EY +AK+ Q EGR+ +EN A++ID +
Sbjct: 1 KRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRITTIENXXRNAQIIDAAESHNGL 60
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ G TV+ VE G+++ Y IVG EAD G +S SPIA+ L+G + G+ +++ P
Sbjct: 61 VTLGNTVTFVELPDGEEETYTIVGSAEADPFEGKISNDSPIAKGLLGHKEGEEVTIQTPA 120
Query: 146 GEKTYEILQVL 156
G+ +I ++
Sbjct: 121 GDMNVKIEKIT 131
>gi|256544717|ref|ZP_05472089.1| transcription elongation factor GreA [Anaerococcus vaginalis ATCC
51170]
gi|256399606|gb|EEU13211.1| transcription elongation factor GreA [Anaerococcus vaginalis ATCC
51170]
Length = 157
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ + ++ + K+Q EL + + + RP I + I EAR++GDLSENA+Y AK Q
Sbjct: 1 MTEQKEVILSKEYLQKLQDELEYLKTKRRPEIAEKIKEARSFGDLSENADYDEAKNEQGE 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+A++E++I A+ + ST + D ++ G+ V + ++ + Y+IVG E++ G
Sbjct: 61 VESRIAKVEDMIRHAKTFEDST-NKDEVSVGSKVLIHDEEFDEDLEYKIVGTAESNPLEG 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL+GK+ GD + V P G+ Y I ++
Sbjct: 120 FISNESPVGEALLGKKKGDKVEVVTPNGKCYYTIKEIR 157
>gi|212696520|ref|ZP_03304648.1| hypothetical protein ANHYDRO_01058 [Anaerococcus hydrogenalis DSM
7454]
gi|325849676|ref|ZP_08170879.1| transcription elongation factor GreA [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|212676456|gb|EEB36063.1| hypothetical protein ANHYDRO_01058 [Anaerococcus hydrogenalis DSM
7454]
gi|325480017|gb|EGC83095.1| transcription elongation factor GreA [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 157
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 55/158 (34%), Positives = 94/158 (59%), Gaps = 3/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ + ++ + K+Q EL + + + RP I + I EAR++GDLSENA+Y AK Q
Sbjct: 1 MTEQKEVILSKEYLQKLQDELEYLKTKRRPEIAEKIKEARSFGDLSENADYDEAKNEQGE 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+A++E++I A+ + ST + D ++ G+ V + ++ + Y+IVG E++ G
Sbjct: 61 VESRIAKVEDMIRHAKTFEDST-NKDEVSVGSKVLIHDEEFDEDFEYKIVGTAESNPLEG 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ ALIGK+ GD + V P G+ Y I ++
Sbjct: 120 FISNESPVGEALIGKKKGDKVEVATPNGKCYYTIKEIR 157
>gi|221135013|ref|ZP_03561316.1| transcription elongation factor [Glaciecola sp. HTCC2999]
Length = 159
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 75/151 (49%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G+ +++E + + ER I K ++ A GD S+NA+YQ K R+ L
Sbjct: 8 ITPNGYRLLKEEEDYLWRVERHEITKKVTWAAGLGDRSDNADYQTNKRRLRQIHSRVRFL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ V+ S ++ FGA V+L E G+ K QIVG E + SI SP+
Sbjct: 68 RKRMEALTVVSPSPEQVGKVYFGAWVTL-ETEEGEVKKVQIVGSDEIYKHTSPCSIDSPL 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARA++GK + D VN P G Y IL + +
Sbjct: 127 ARAMVGKTIDDEAVVNMPDGPIYYTILAIEY 157
>gi|268609180|ref|ZP_06142907.1| transcription elongation factor GreA [Ruminococcus flavefaciens
FD-1]
Length = 156
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K ++ + +DK+ EL +R + + + AR+YGDLSENAEY AK Q + E
Sbjct: 1 MAVK-QMSRESYDKLVAELNDLIINKRKEVAERLKVARSYGDLSENAEYDEAKNEQAILE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+AEL+ I AE++D S +S D I + +++ ++G + + IV A+V+ G +
Sbjct: 60 AHIAELQYTIDNAEIVDDSNISVDEIGMSSKITIKRLDTGKIETFTIVSTNHANVREGKI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S +SPI +A + K +GD+ V+AP GE +E++++
Sbjct: 120 SDASPIGKAAMKKRVGDVFIVDAPAGELKFEVVEIS 155
>gi|241759774|ref|ZP_04757874.1| transcription elongation factor GreB [Neisseria flavescens SK114]
gi|241319782|gb|EER56178.1| transcription elongation factor GreB [Neisseria flavescens SK114]
Length = 163
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 74/155 (47%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+
Sbjct: 6 KNYITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L + A V+D F + + + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLEAAVVVDPEAREATDQIFFSATVGLLRGDGREQTVKIVGVDEIDTAKNKISWI 125
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR+LI GD + ++ P G + EIL V +I
Sbjct: 126 SPLARSLIKAREGDEVVLDTPEGREVIEILSVEYI 160
>gi|325109310|ref|YP_004270378.1| transcription elongation factor GreA [Planctomyces brasiliensis DSM
5305]
gi|324969578|gb|ADY60356.1| transcription elongation factor GreA [Planctomyces brasiliensis DSM
5305]
Length = 160
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+++ P+T +G +K+ E++ + P I ++EAR GDL ENAEY +E Q + +
Sbjct: 1 MERQPITRQGHEKLLAEIKHIETVILPEINTRLAEARDEGDLKENAEYHGQREQQGMAQA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ L+ + ++D + M + FG+TV++ + D++ Y+ VG E D +
Sbjct: 61 KVNLLKTKLANCYIVDKADMPKGVVTFGSTVTVKDLKWDDEEAYEFVGPGEEDYDCEPMK 120
Query: 122 I--SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
I SSP+A+A+ GK++GD ++V+ P G + EI+++
Sbjct: 121 ILTSSPLAKAMEGKKVGDKVAVDTPQGVRELEIVKIQ 157
>gi|255068272|ref|ZP_05320127.1| transcription elongation factor GreB [Neisseria sicca ATCC 29256]
gi|255047464|gb|EET42928.1| transcription elongation factor GreB [Neisseria sicca ATCC 29256]
Length = 163
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL +ERP I++ ++ A + GD SEN +Y K + R+
Sbjct: 6 KNYITPVGWQALKDELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDHRI 65
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V++ + D++ FGATV L+ + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLEAAVVVNPELREATDQVFFGATVGLL-RGDGREQTVKIVGVDEIDTAQNKISW 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LI GD + +N P G + EIL V +I
Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|119478768|ref|ZP_01618607.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2143]
gi|119448347|gb|EAW29602.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2143]
Length = 167
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G ++ E+ + ERP + + EA GD SEN +Y K + R+
Sbjct: 14 YITPEGEKALRAEVYQLWKIERPEVTAVVHEAAKNGDRSENGDYIYGKRRMREIDSRVRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + E++D + D I FGA V++ + + K++Y+IVG E D+ S +S+ SP
Sbjct: 74 LTKRLDSVEIVDRTPADKDIIYFGAWVTVED-EAESKQSYRIVGPDEFDLASNKLSMDSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+AL+GK + D I P G++ I +V +
Sbjct: 133 LAKALLGKRVEDEILFKTPEGQRELYISEVWY 164
>gi|332828969|gb|EGK01647.1| hypothetical protein HMPREF9455_02058 [Dysgonomonas gadei ATCC
BAA-286]
Length = 155
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G+ K+++E+ + ERP I K I+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MAITYMTEDGYKKLKEEISALES-ERPAISKQIAEARDKGDLSENAEYDAAKEAQGLLEA 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++A+++N++ A +I+ + D + V++ + + Y +V + EA+++ ++
Sbjct: 60 KIAQMKNLLANARIINEEAIGIDVVQILNKVTIRNTKNNQQMTYTLVAESEANLKENKIA 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S+P+A+ L+GK++GD+ + P G ++EI+ +
Sbjct: 120 VSTPVAQGLMGKKVGDVAEIKVPSGMMSFEIVNIS 154
>gi|312866104|ref|ZP_07726325.1| transcription elongation factor GreA [Streptococcus downei F0415]
gi|311098508|gb|EFQ56731.1| transcription elongation factor GreA [Streptococcus downei F0415]
Length = 160
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T ++++QEL + RP +I+ I AR+YGDLSEN+EY AAK+ Q
Sbjct: 1 MAEKTYPMTQAEKEQLEQELEDLKLVRRPEVIERIKIARSYGDLSENSEYDAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG++ +E I AE+ID ++ D +A G TV + E + D+ Y IVG ADV +G
Sbjct: 61 EGQIQIIETKIRYAEIIDSDAVASDEVAIGKTVVVQEVGTKDQDTYSIVGAAGADVFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK++GD ++ +P G EI+ V
Sbjct: 121 ISNESPIAQALIGKKVGDKTTIESPAGSYDVEIVSVE 157
>gi|87199462|ref|YP_496719.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
gi|87135143|gb|ABD25885.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
Length = 182
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T GF ++ ERP I++ +S A GD SEN +Y ++ + +A
Sbjct: 28 PITPAGFAALRARYDHLLGTERPAIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRELAF 87
Query: 66 LENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + + V+D + R+ FGATV + +++ K +VGD E D GL+ S+
Sbjct: 88 LARRMKASRVVDPARQEDRSRVLFGATVEIADEDDNRKV-LTLVGDDEQDASKGLIGWSA 146
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
PIA+AL G +GD+ V P G+K +EI+ + +
Sbjct: 147 PIAKALRGSRVGDLRIVRLPSGQKEWEIMAISY 179
>gi|69248024|ref|ZP_00604587.1| Prokaryotic transcription elongation factor GreA [Enterococcus
faecium DO]
gi|257880194|ref|ZP_05659847.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,230,933]
gi|257882995|ref|ZP_05662648.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,502]
gi|257888545|ref|ZP_05668198.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,141,733]
gi|257891422|ref|ZP_05671075.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,410]
gi|257897080|ref|ZP_05676733.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium Com12]
gi|257899019|ref|ZP_05678672.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium Com15]
gi|293377303|ref|ZP_06623507.1| transcription elongation factor GreA [Enterococcus faecium PC4.1]
gi|294622139|ref|ZP_06701215.1| transcription elongation factor GreA [Enterococcus faecium U0317]
gi|68194592|gb|EAN09082.1| Prokaryotic transcription elongation factor GreA [Enterococcus
faecium DO]
gi|257814422|gb|EEV43180.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,230,933]
gi|257818653|gb|EEV45981.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,502]
gi|257824599|gb|EEV51531.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,141,733]
gi|257827782|gb|EEV54408.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,410]
gi|257833645|gb|EEV60066.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium Com12]
gi|257836931|gb|EEV62005.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium Com15]
gi|291598340|gb|EFF29427.1| transcription elongation factor GreA [Enterococcus faecium U0317]
gi|292643995|gb|EFF62101.1| transcription elongation factor GreA [Enterococcus faecium PC4.1]
Length = 159
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +EN+I A++ID + D ++ G TV+ +E G+++ Y IVG EAD SG
Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK D +++ PGG+ +I++V
Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKVE 157
>gi|294013274|ref|YP_003546734.1| transcription elongation factor GreB [Sphingobium japonicum UT26S]
gi|292676604|dbj|BAI98122.1| transcription elongation factor GreB [Sphingobium japonicum UT26S]
Length = 161
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 90/160 (56%), Gaps = 4/160 (2%)
Query: 1 MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + P +T +GF K++ E ERP+I++ +S A GD SEN +Y ++
Sbjct: 1 MSNPHPNYITPEGFAKLRAEYDQLLGVERPKIVEVVSWAAGNGDRSENGDYLYGRKRMRE 60
Query: 59 NEGRMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
+G++ L + A+V+D ++ FGATV++ +++ ++ +VG+ E + +
Sbjct: 61 IDGQLKRLSRKMKDAKVVDPRQQPDKSKVYFGATVTIADEDD-KRRTVTLVGNDETEASA 119
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
G + S+PIARAL G +GD+ V P GEK YE++++ +
Sbjct: 120 GRIGWSTPIARALRGAAVGDLRRVMLPAGEKEYEVMEIRY 159
>gi|145309060|gb|ABP57740.1| transcription elongation factor GreB [Chromobacterium violaceum]
Length = 190
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 78/154 (50%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ +++ EL ERP +++ ++ A + GD SEN +Y K + R+
Sbjct: 33 KNYITPGGWQRLKDELYHLVNRERPEMVQVVNWAASNGDRSENGDYLYGKRRLREIDRRI 92
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L + AEV+D T F + L+E+ G ++ +IVG E D+ G +S
Sbjct: 93 RFLTKRLEIAEVVDPETREATDQVFFSATVLIERGDGSEQLLRIVGVDEIDLARGHISWI 152
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIAR L+ GD + P G++ E+L+V +
Sbjct: 153 SPIARTLLKAREGDSVLFRGPDGDEDIEVLEVRY 186
>gi|300214537|gb|ADJ78953.1| Transcription elongation factor [Lactobacillus salivarius CECT
5713]
Length = 156
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 102/157 (64%), Gaps = 2/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MAEKTFPMTLEGKEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFM 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ E++N++ AE+ID ++ + +A G TV+ E + + + YQIVG EAD G
Sbjct: 61 EARIKEIQNMLNHAEIIDNKSIDENEVAVGKTVTFQE-DDDEPETYQIVGAAEADPFEGK 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA LIG +LGDI+S++ PGG +I+ V
Sbjct: 120 ISNESPIASGLIGHKLGDIVSIDTPGGTMQVKIIDVK 156
>gi|90961794|ref|YP_535710.1| transcription elongation factor [Lactobacillus salivarius UCC118]
gi|90820988|gb|ABD99627.1| Transcription elongation factor [Lactobacillus salivarius UCC118]
Length = 156
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 102/157 (64%), Gaps = 2/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +G +K++QEL + +R II+ I AR++GDLSEN+EY++AK+ Q
Sbjct: 1 MAEKTFPMTLEGKEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFM 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ E++N++ AE+ID ++ + +A G TV+ E + + + YQIVG EAD G
Sbjct: 61 EARIKEIQNMLNHAEIIDNKSIDENEVAVGKTVTFQE-DDDEPETYQIVGAAEADPFEGK 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA LIG +LGD++S++ PGG +I+ V
Sbjct: 120 ISNESPIASGLIGHKLGDVVSIDTPGGTMRVKIIDVK 156
>gi|293572488|ref|ZP_06683467.1| transcription elongation factor GreA [Enterococcus faecium E980]
gi|291607405|gb|EFF36748.1| transcription elongation factor GreA [Enterococcus faecium E980]
Length = 159
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +EN+I A++ID + D ++ G TV+ +E G+++ Y IVG EAD SG
Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK D +++ PGG+ +I++V
Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIVTPGGDMLVKIVKVE 157
>gi|258647783|ref|ZP_05735252.1| transcription elongation factor GreA [Prevotella tannerae ATCC
51259]
gi|260852234|gb|EEX72103.1| transcription elongation factor GreA [Prevotella tannerae ATCC
51259]
Length = 177
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 91/151 (60%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G+DK+ L + ERP AI+EAR GDLSEN+EY AAKE Q + E ++++
Sbjct: 26 YMTQEGYDKMVARLHHMEAVERPAASAAIAEARDKGDLSENSEYDAAKEAQGMLEMKISQ 85
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I A++ID S ++ + + +TV++ +G Y IV + EA+++ G +S +P
Sbjct: 86 LKEAIATAKIIDTSKLNNETVQILSTVAMKNLKTGMVMTYTIVSESEANIREGKISSQTP 145
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+G ++GD++ V P G EI +
Sbjct: 146 IAQGLLGHKVGDVVEVKIPQGLIQLEIQSIS 176
>gi|148654263|ref|YP_001274468.1| transcription elongation factor GreA [Roseiflexus sp. RS-1]
gi|229485907|sp|A5UPG5|GREA_ROSS1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|148566373|gb|ABQ88518.1| transcription elongation factor GreA [Roseiflexus sp. RS-1]
Length = 157
Score = 140 bits (353), Expect = 8e-32, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T G +++ EL + R I + I+ A+ GD+SE+ EY+ AK Q
Sbjct: 1 MSDKPAYLTRDGRARLEAELEELVTKGRKEIAERINAAKELGDISESGEYEDAKNQQAHL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ E+++I+ RA++ID + G+ V++ ++ + IVG EA G
Sbjct: 61 EGRIREIKSILARAQIIDEENGDNHEVRIGSRVTVRIDGEDGEETWTIVGSTEAKPSEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI AL+GK ++V P G I+ +
Sbjct: 121 ISNESPIGSALLGKRPRQKVTVETPSGTMKLTIVDIQ 157
>gi|87122832|ref|ZP_01078703.1| transcription elongation factor GreB [Marinomonas sp. MED121]
gi|86161884|gb|EAQ63178.1| transcription elongation factor GreB [Marinomonas sp. MED121]
Length = 168
Score = 139 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G K+ EL++ +E+RP++ +++ EA A GD SENAEY K+ + R+
Sbjct: 14 YITKEGAQKLTTELKYLWKEKRPQVTESVREAAAQGDRSENAEYIYGKKQLREIDRRVRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + V+D I FGA V+L + + + K ++IVG E D S +SI SP
Sbjct: 74 LEKRLEAFTVVDRLPEDQLSIYFGAWVTLED-DDENTKYFRIVGPDELDHDSRYISIDSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+AL+ K+ GD I + G Y I +V +
Sbjct: 133 MAKALLKKQEGDEIELKLVTGIVNYIIDKVEY 164
>gi|325678470|ref|ZP_08158086.1| transcription elongation factor GreA [Ruminococcus albus 8]
gi|324109838|gb|EGC04038.1| transcription elongation factor GreA [Ruminococcus albus 8]
Length = 158
Score = 139 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 55/150 (36%), Positives = 87/150 (58%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
V+ G+ K+ +E + +R + + + EAR++GDLSENAEY AK Q + E R+ EL
Sbjct: 7 VSKAGYAKLVEEKEYLVTVKRKEVAQKLKEARSFGDLSENAEYDEAKNEQAILESRINEL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I+ A V+D +S I G+ V L + + + QIVG E+D +G +S SPI
Sbjct: 67 EILISNATVVDDDEVSVHEIGVGSYVKLKDLELDEVETLQIVGSTESDPDNGKISDESPI 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+A + ++GDI V AP G +E+L++
Sbjct: 127 GKAAMHMKVGDIFEVEAPAGMIKFEVLEIT 156
>gi|227873285|ref|ZP_03991550.1| transcription elongation factor GreA [Oribacterium sinus F0268]
gi|227840852|gb|EEJ51217.1| transcription elongation factor GreA [Oribacterium sinus F0268]
Length = 161
Score = 139 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 4/158 (2%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + K +T G +K++ EL + +R I + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MAEEKKNLLTRAGLNKLESELHNLKVNKRQEIAEKIKEAREQGDLSENAEYDAAKDEQRE 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ +E+++ AEV+D + I G V L +K ++ Y IVG EA+ G
Sbjct: 61 IEERIVAIESLLKNAEVVDDAEE--GTINIGCKVKLFDKEFDEEVEYMIVGSTEANSLQG 118
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL+ +GD ++V G Y++L V
Sbjct: 119 KISNESPVGMALLRHRVGDEVTVETQAGVLEYKVLSVE 156
>gi|257885237|ref|ZP_05664890.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,501]
gi|257821089|gb|EEV48223.1| prokaryotic transcription elongation factor GreA [Enterococcus
faecium 1,231,501]
Length = 159
Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 104/157 (66%), Gaps = 1/157 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +EN+I A++ID + D ++ G TV+ +E GD++ Y IVG EAD SG
Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGDEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK D +++ PGG+ +I++V
Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKVE 157
>gi|331091969|ref|ZP_08340801.1| hypothetical protein HMPREF9477_01444 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402868|gb|EGG82435.1| hypothetical protein HMPREF9477_01444 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 160
Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T G K+++EL + +R + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MADKKTILTYAGLKKLEEELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ELE I+ AEV+ + D+I+ G TV++ + ++ ++IVG EA+ G
Sbjct: 61 EARIEELEKILKNAEVVVEDEVDLDKISIGCTVTVYDNEFEEEIEFKIVGSTEANSLEGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +ALIG+++ D++ V G Y++L++
Sbjct: 121 ISNESPVGKALIGRKVDDVVEVETQAGVMEYKVLKIE 157
>gi|50364917|ref|YP_053342.1| transcription elongation factor [Mesoplasma florum L1]
gi|81391980|sp|Q6F215|GREA_MESFL RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|50363473|gb|AAT75458.1| transcription elongation factor [Mesoplasma florum L1]
Length = 156
Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 96/155 (61%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E
Sbjct: 1 MAKEIILTQEGIEELKHELKHLLEVVRPQVIEELVEARNQGDLSENADYDAARNRQAEVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ELE +I++A++I+ S+ + I G+ V + N+ + +IVG EAD GL+
Sbjct: 61 ARIKELETMISKAKLIEDSSTTDGAIKIGSKVKFIMLNTKQTREVKIVGAVEADPFKGLI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPIA+A++GK++G+ + V + EI +V
Sbjct: 121 SNESPIAKAILGKKVGESVEVKDINAPYSIEIKEV 155
>gi|291530006|emb|CBK95591.1| transcription elongation factor GreA [Eubacterium siraeum 70/3]
Length = 156
Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +TS+G +++ L + R I + I A ++GDLSEN+EY AK Q + E
Sbjct: 1 MATQTTLTSQGLKDLEERLEHLKSVTRKEIAEKIKVALSFGDLSENSEYDEAKNEQGIVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+AE+E + A+V+D +S + + G TV + + SG K + +VG +E D+++ +
Sbjct: 61 AEIAEIEATLKNAKVVDEDELSTEHVNIGNTVVIED-ESGKKIKFFLVGSKEVDMKAMKI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +A IGK+LG+ +SV AP G K Y+I+++
Sbjct: 120 SDESPIGKACIGKKLGEEVSVEAPAGVKKYKIVEI 154
>gi|212550757|ref|YP_002309074.1| transcription elongation factor GreA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548995|dbj|BAG83663.1| transcription elongation factor GreA [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 156
Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 57/151 (37%), Positives = 96/151 (63%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+DK+ +E+ + + EERP IIK I+EAR GDLSEN EY AA+E Q++ E ++ +
Sbjct: 5 YMTKGGYDKLLEEIVYLESEERPSIIKQIAEAREKGDLSENVEYNAAREAQSILELKITQ 64
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L++++ +ID S + + I V+L +G Y +V + E D+++G +SI++P
Sbjct: 65 LKSLVANTRLIDESHIQTNSIQILNKVTLRNIKNGQTTVYTLVSEAETDLKAGKISINTP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
I++ LIGK++G+I + P G +EIL +
Sbjct: 125 ISKGLIGKKVGEIAEIKTPSGIIYFEILSIS 155
>gi|227499306|ref|ZP_03929418.1| transcription elongation factor [Anaerococcus tetradius ATCC 35098]
gi|227218657|gb|EEI83891.1| transcription elongation factor [Anaerococcus tetradius ATCC 35098]
Length = 157
Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 95/154 (61%), Gaps = 1/154 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++ ++ + +K++ EL + + ++RP I + I AR++GDLSENA+Y AK Q E R
Sbjct: 5 KEVILSKEYLEKLEDELEYLKTKKRPEIAEKIKIARSFGDLSENADYDEAKNEQGEIESR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A++E++I A+ I++ S D + G TV++ ++ ++ +Y+IVG E++ G +S
Sbjct: 65 IAKVEDMIRNAKTIEVKENS-DEVGVGNTVTVYDEEFDEEFDYKIVGTAESNPLEGFISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ALIGK++ + + V+ P G+ + I +
Sbjct: 124 ESPVGAALIGKKVNERVEVSTPNGKMYFVIKNIK 157
>gi|148553320|ref|YP_001260902.1| transcription elongation factor GreB [Sphingomonas wittichii RW1]
gi|148498510|gb|ABQ66764.1| transcription elongation factor GreB [Sphingomonas wittichii RW1]
Length = 163
Score = 139 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T GF ++ ERP +++ IS A GD SEN +Y ++ + +A
Sbjct: 9 YITPAGFAAMRARYDHLFGTERPALVEVISWAAGNGDRSENGDYIYGRKKLREIDRELAY 68
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + A+V+D + + ++ FGATV++V+++ ++ +VG EAD SG +S S
Sbjct: 69 LSRRMKAAKVVDPARQAERGKVFFGATVTVVDEDD-VERTVTLVGADEADAGSGRISWLS 127
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL G +GD+ V PGG++ EIL + +
Sbjct: 128 PLARALRGAAVGDVRRVALPGGDREQEILSIRY 160
>gi|298373336|ref|ZP_06983325.1| transcription elongation factor GreA [Bacteroidetes oral taxon 274
str. F0058]
gi|298274388|gb|EFI15940.1| transcription elongation factor GreA [Bacteroidetes oral taxon 274
str. F0058]
Length = 156
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 91/155 (58%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + +T G+ K+ E+ + +R I I+EAR GDLSENAEY AAKE Q + E
Sbjct: 1 MAVVYMTEDGYKKLADEIAQMEAVDRKAISAQIAEARDKGDLSENAEYDAAKEAQGMLEM 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++A+++ + A +ID S + D + TV + + + Y +V + EA+++ G ++
Sbjct: 61 KIAQMKETLANARIIDESKLKTDSVQILNTVRVKNLANKQEMTYTLVSENEANIREGKLA 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
I++PI + L+GK++G++ +N P G +E++ +
Sbjct: 121 INTPIGKGLLGKKIGEVAEINVPAGLMRFEVVSIS 155
>gi|229589215|ref|YP_002871334.1| transcription elongation factor [Pseudomonas fluorescens SBW25]
gi|229361081|emb|CAY47944.1| transcription elongation factor [Pseudomonas fluorescens SBW25]
Length = 157
Score = 139 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K+ +T +G + +++EL + +E+RP + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKL-ITKEGHEALKKELDYLWREKRPDTTRKVTWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V++ ++ FGA V + G+ K ++IVG E + +
Sbjct: 60 RRVRYLRKRLEDMRVVEYMPEQEGKVFFGAWVDIEN-EQGETKRFRIVGYDEIYERMDYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SI SP+ARAL+ KE+ D V P G+ + I + ++
Sbjct: 119 SIDSPMARALLRKEVDDEAIVQTPSGDVCWWITGIEYV 156
>gi|332185240|ref|ZP_08386989.1| transcription elongation factor GreB [Sphingomonas sp. S17]
gi|332014964|gb|EGI57020.1| transcription elongation factor GreB [Sphingomonas sp. S17]
Length = 160
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T G+ ++QE ERP+++ I+ A GD SEN +Y ++ +
Sbjct: 1 MDRPNYITPAGYAALRQEYEALFAVERPKLVDTIAWAAGNGDRSENGDYIYGRKRLREID 60
Query: 61 GRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ L + A+VID + ++ FGATV++ +++ ++ +VGD EAD G
Sbjct: 61 RRLGWLSKRMKAAKVIDPARQEDRSKVWFGATVTIADEDDNERV-LTLVGDDEADAGQGR 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
V ++P+ RAL G +GD+ V P GE+ YE++ + +
Sbjct: 120 VGWNAPLVRALRGAAIGDLRRVVLPAGEREYEVIAITY 157
>gi|103487218|ref|YP_616779.1| transcription elongation factor GreB [Sphingopyxis alaskensis
RB2256]
gi|98977295|gb|ABF53446.1| transcription elongation factor GreB [Sphingopyxis alaskensis
RB2256]
Length = 160
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 2/152 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ GF ++ E +ERP++++ IS A GD SEN +Y ++ + R+ L
Sbjct: 9 ISPAGFAALRAEYDALLGDERPKLVEVISWAAGNGDRSENGDYIYGRKRLREIDRRLGFL 68
Query: 67 ENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A V+D + RI FGATV L + + ++ +VGD EA+ SG + +SP
Sbjct: 69 ARRMKAARVVDPAQQPDKSRIWFGATVELAD-DDDARRTVTLVGDDEAEAGSGRIGWNSP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL G +GD+ +V P G K +E++ + +
Sbjct: 128 LARALRGAAVGDLRTVQLPAGPKLWEVIAIRY 159
>gi|302327668|gb|ADL26869.1| transcription elongation factor, GreA/GreB family [Fibrobacter
succinogenes subsp. succinogenes S85]
Length = 155
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 89/154 (57%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K ++ +GF+K + E + ERP +I + A A GD SENA Y + + R+
Sbjct: 2 KHLISKEGFEKFKAEWEHLKYVERPAMINQVQAAAAEGDRSENAAYTYGRMRVREIDRRL 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
EL+ I+ A++++ + I FGATV +++K + +K Y IVGD+E D G +S+
Sbjct: 62 RELDRILDGAQIVENAATKDGSIRFGATVKMIDKKTKREKIYSIVGDKEIDPLQGRISMK 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPI AL GK+ GD + V AP G+ YEIL+V +
Sbjct: 122 SPIGEALQGKKAGDTVEVQAPRGKIVYEILEVNY 155
>gi|307544299|ref|YP_003896778.1| transcription elongation factor GreB [Halomonas elongata DSM 2581]
gi|307216323|emb|CBV41593.1| transcription elongation factor GreB [Halomonas elongata DSM 2581]
Length = 193
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 51/151 (33%), Positives = 86/151 (56%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G ++++ L + +RP + + EA A GD SENA+Y K+ N R+ L
Sbjct: 39 ITAEGAERLRGILDHLSRVKRPALSTKVGEAAALGDRSENADYTYNKKELNRVIARIRYL 98
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +++D DR+ FGA V+L + +G++ +IVG E D +S+ +P+
Sbjct: 99 TKRLDELQIVDRLPADTDRVFFGAFVTLED-ENGEELRLRIVGHDETDTGKHWISVDAPL 157
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+AL+GK L D +V APGGE TY I ++ +
Sbjct: 158 AKALLGKGLDDEATVAAPGGETTYLITEIDY 188
>gi|261392938|emb|CAX50523.1| transcription elongation factor GreB (transcript cleavage factor
GreB) [Neisseria meningitidis 8013]
Length = 163
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T + ++ EL +ERP I++ ++ A GD SEN +Y K + R+
Sbjct: 6 KNYITPARWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A V+D + D++ FGATV L+ + G ++ +IVG E D +S
Sbjct: 66 RFLTKRLEAAVVVDPELREATDQVFFGATVGLL-RGDGREQTVKIVGIDEIDTAQNKISW 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+AR LI GD + +N P G + EIL V +I
Sbjct: 125 ISPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160
>gi|56478200|ref|YP_159789.1| transcription elongation factor GreB [Aromatoleum aromaticum EbN1]
gi|56314243|emb|CAI08888.1| transcription elongation factor [Aromatoleum aromaticum EbN1]
Length = 186
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 53/158 (33%), Positives = 96/158 (60%), Gaps = 3/158 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G++ +++EL + ERP++++ ++ A + GD SEN +Y K+ + R+
Sbjct: 29 KNYMTRRGYESLRRELDHLVRIERPKMVETVAWAASNGDRSENGDYIYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGD--KKNYQIVGDQEADVQSGLV 120
L I AEV+D + D++ FGATVS+V+ +S D ++ +QIVG EAD +G +
Sbjct: 89 RFLIKRIESAEVVDPADQREIDQVFFGATVSIVDVDSDDDSEQIWQIVGVDEADAGAGRI 148
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SP+ARAL+ GD++ +P G + E++++ ++
Sbjct: 149 SWISPLARALLKAREGDVVRFMSPAGPREIEVVEIRYV 186
>gi|85060298|ref|YP_456000.1| transcription elongation factor GreB [Sodalis glossinidius str.
'morsitans']
gi|84780818|dbj|BAE75595.1| transcription elongation factor GreB [Sodalis glossinidius str.
'morsitans']
Length = 155
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +G+ ++Q EL + RP I + ++ A + GD SENA+Y K++ +
Sbjct: 1 MKTNLITRQGYQELQDELDHLWKRYRPEITEKVAWAASLGDRSENADYHYNKKILREIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L ++ A V+D S RI FGA V + G+ K ++I G E +S
Sbjct: 61 RVRYLRRVLKEARVVDYSPQQEGRIFFGAWVEVENAE-GETKRFRIAGPDEIYKHKDYIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I SP+ARALI K + D V PGG +T+ I + +
Sbjct: 120 IDSPMARALIKKAVDDEAEVVTPGGHRTWYINAISY 155
>gi|310820881|ref|YP_003953239.1| transcription elongation factor GreB [Stigmatella aurantiaca
DW4/3-1]
gi|309393953|gb|ADO71412.1| Transcription elongation factor GreB [Stigmatella aurantiaca
DW4/3-1]
Length = 178
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ +T G +++ +EL ERP++ +S A A GD SENAEY K+ + R
Sbjct: 23 QRRYLTRLGAERMHRELLRLLNVERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRR 82
Query: 63 MAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ L+ + A ++ + R+ FGATV+L +++ G + YQIVG E D Q G +S
Sbjct: 83 IRFLQKRLDTATIVTPAEQTDQGRVYFGATVTLEDED-GVQTTYQIVGSDEIDTQGGRIS 141
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+ SPI +AL+ K +GD + V P GE I+ + ++
Sbjct: 142 VESPIGKALLRKAVGDSVEVMRPRGEIELTIVAIAYM 178
>gi|26553820|ref|NP_757754.1| transcription elongation factor GreA [Mycoplasma penetrans HF-2]
gi|26453827|dbj|BAC44158.1| transcription elongation factor GreA [Mycoplasma penetrans HF-2]
Length = 161
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T G ++++EL++ RP IIK I EAR GDLSENA+Y AAK Q E
Sbjct: 3 AKKNLMTESGKKELEKELKYLIDVRRPEIIKQIQEAREQGDLSENADYDAAKNFQAQIES 62
Query: 62 RMAELENIITRAEVIDISTMSGDR---IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
R+ E++NI+ ++I SG + GATV++ + + G+ Y+IVG E+D
Sbjct: 63 RIKEIQNILNNTKIIKEEKSSGSNEKKVHVGATVTIKDYSDGESHTYKIVGPIESDPSQN 122
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S P+A+ ++GK++G+ V +++ +
Sbjct: 123 KISNECPLAKCIMGKKVGEESYVKGIDHPYKVKVVDIT 160
>gi|254468751|ref|ZP_05082157.1| transcription elongation factor GreB [beta proteobacterium KB13]
gi|207087561|gb|EDZ64844.1| transcription elongation factor GreB [beta proteobacterium KB13]
Length = 160
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 50/159 (31%), Positives = 91/159 (57%), Gaps = 2/159 (1%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M ++ +T GF +++EL + +RPR++K +S A + GD SEN +Y K+
Sbjct: 1 MSEQSSYLTKNGFIYLREELNHLLKVDRPRVVKDVSWAASNGDRSENGDYIYGKKRLRQI 60
Query: 60 EGRMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
+ R+ L +I +++ID + D++ FGATV + QIVG E D +
Sbjct: 61 DSRVKYLLTVIEDSKIIDPLEQENKDKVFFGATVEYENLDKNQINKIQIVGVPEVDPKEN 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S SP+++A++GK++G+I+S +P G+K EI+ +++
Sbjct: 121 KISWLSPLSKAILGKQVGEIVSYESPSGQKEIEIMSIIY 159
>gi|256821719|ref|YP_003145682.1| transcription elongation factor GreB [Kangiella koreensis DSM
16069]
gi|256795258|gb|ACV25914.1| transcription elongation factor GreB [Kangiella koreensis DSM
16069]
Length = 162
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +T+ G +++ EL + + RP + +AI+ A A GD SENAEY K+ +
Sbjct: 1 MPRSNLITAAGAVRLRNELAYLWKTLRPEVTRAINAAAAEGDRSENAEYIYRKKQLREID 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L+ VI+ + D+I FGA VSL + +G + Y++VG E D + +
Sbjct: 61 RRVRYLQKRTADLRVIEHTPQEKDKIFFGAQVSLED-ENGQEIIYRLVGSDEFDHKPHYI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ D + + P GEK + I+ + +
Sbjct: 120 SIDSPMARALLKKQIDDEVKLRLPDGEKLFWIMGIEY 156
>gi|317505048|ref|ZP_07962995.1| transcription elongation factor GreA [Prevotella salivae DSM 15606]
gi|315663826|gb|EFV03546.1| transcription elongation factor GreA [Prevotella salivae DSM 15606]
Length = 156
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 92/151 (60%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ +
Sbjct: 3 YMSQEGYDKLVAELKRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLESKINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ I A+++D+S +S D + + V + ++ K Y IV + EA+++ G +SI +P
Sbjct: 63 MKLDIAEAKIVDVSRLSADAVQIMSKVEMTNMSNKSKMVYTIVSESEANLKQGKISIKTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ ++GD++ V P G I ++
Sbjct: 123 IAQGLLNHKVGDVVEVQIPRGIIKLRIDKIS 153
>gi|163815694|ref|ZP_02207066.1| hypothetical protein COPEUT_01875 [Coprococcus eutactus ATCC 27759]
gi|158448999|gb|EDP25994.1| hypothetical protein COPEUT_01875 [Coprococcus eutactus ATCC 27759]
Length = 161
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K VT G KI++EL+ + +R I I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MAEKKNVVTYSGLKKIEEELQDLKVNKRREIAAKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ +LE ++ EV+D + + G V + + ++ Y IVG +AD+ +
Sbjct: 61 EARIEQLEAMLKNIEVVDEDEVDTGVVGIGCKVIVYDYEYDEEIEYDIVGSSQADIMNNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL G ++G+ + V AP GE Y +L +
Sbjct: 121 ISDESPVGMALKGAKVGEEVLVEAPDGEFKYRVLDIK 157
>gi|301167994|emb|CBW27580.1| transcription elongation factor [Bacteriovorax marinus SJ]
Length = 154
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K FD++ E+ + ERP+ + I+ A GD SENA+Y K+ + R+ L
Sbjct: 1 MTPKCFDELSAEMENLLKVERPKTTQIIAWAAGNGDRSENADYIYGKKRLREIDRRLRFL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +EVID MS +++ F ATV++ ++ + + K Y IVG E +V G +S SPI
Sbjct: 61 KKRLDDSEVIDPLKMSSEKVQFSATVTVEDEEA-EVKVYSIVGIDEVEVSKGKISWRSPI 119
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
RAL+GKE+ DI+S++AP G EIL++ +
Sbjct: 120 GRALLGKEVEDIVSIDAPNGSFELEILKIEY 150
>gi|116493088|ref|YP_804823.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC
25745]
gi|116103238|gb|ABJ68381.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC
25745]
Length = 154
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 60/151 (39%), Positives = 90/151 (59%), Gaps = 3/151 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+P+T G+ KI QE+ +Q RP +IKA+++ARA GDLSENAEY AAK EGR+
Sbjct: 6 VPMTPSGYAKINQEIDDLKQT-RPALIKALADARALGDLSENAEYSAAKRDLRRMEGRLR 64
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L+ I+ +++I + S I G+ V + + D+ Y+IVG EADV + +S S
Sbjct: 65 YLQRQISYSKIIQNTNHSK--IDLGSIVKMRFVDDHDEITYEIVGKHEADVVNNKISFQS 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ AL+ + DI+ V AP + EIL++
Sbjct: 123 PLGSALMHHKTHDIVLVTAPDEQYQVEILEI 153
>gi|304384708|ref|ZP_07367054.1| transcription elongation factor GreA [Pediococcus acidilactici DSM
20284]
gi|304328902|gb|EFL96122.1| transcription elongation factor GreA [Pediococcus acidilactici DSM
20284]
Length = 161
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 2/158 (1%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M D + P+T G K+++EL + E RP++I+ I AR++GDLSEN+EY++AK+ Q++
Sbjct: 1 MADEKRYPMTLDGKQKLEEELETLKTETRPQVIERIKIARSFGDLSENSEYESAKDEQSM 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ +E+++ AE+ID + + ++ G V E + + Y IVG EAD SG
Sbjct: 61 VESRINTIEHMLHYAEIIDDEAIDSNEVSLGRVVEFQELPDEEPEEYTIVGAAEADPMSG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ L+GK++GD++++ PGG+ +IL V
Sbjct: 121 KISNDSPIAKGLLGKKVGDVVTIATPGGDMKVKILTVK 158
>gi|296282663|ref|ZP_06860661.1| transcription elongation factor GreB [Citromicrobium bathyomarinum
JL354]
Length = 165
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 2/158 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M P+T G+ ++ RP I++ +S A GD SEN +Y ++ +
Sbjct: 1 MKGDNPITPAGYSAMKARYDHLLGTARPEIVETVSWAAGNGDRSENGDYLYGRKKMREID 60
Query: 61 GRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+A L + A VID + DR+ FGATV+LV+++ +K +VG+ EA+ G
Sbjct: 61 RELAHLARRMKSARVIDPADQPNRDRVFFGATVTLVDEDD-REKVLTLVGNDEAEASEGR 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+ARAL G E+GD+ V P G + +E+L++ +
Sbjct: 120 IGWGSPMARALRGAEVGDLRMVKGPTGLREWEVLKISY 157
>gi|288925501|ref|ZP_06419434.1| transcription elongation factor GreA [Prevotella buccae D17]
gi|315606633|ref|ZP_07881644.1| transcription elongation factor GreA [Prevotella buccae ATCC 33574]
gi|288337717|gb|EFC76070.1| transcription elongation factor GreA [Prevotella buccae D17]
gi|315251643|gb|EFU31621.1| transcription elongation factor GreA [Prevotella buccae ATCC 33574]
Length = 155
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 90/151 (59%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++
Sbjct: 3 YMSQEGYDKLVAELKRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINR 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ I A+++D S +S D + +TV + + K Y IV + EA+++ G +SI +P
Sbjct: 63 MKTTIAEAKIVDTSRLSADAVQILSTVEMTNMGNKAKMTYTIVSESEANLKEGKISIKTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ K++GD+ + P G I ++
Sbjct: 123 IAQGLLNKKVGDVAEIKIPSGTIKLRIDKIT 153
>gi|73748580|ref|YP_307819.1| transcription elongation factor GreA [Dehalococcoides sp. CBDB1]
gi|73660296|emb|CAI82903.1| transcription elongation factor GreA [Dehalococcoides sp. CBDB1]
Length = 170
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V+KIP+T+ G+ K++ EL + +R +I+ + A D+ ENA Y AAKE + EG
Sbjct: 15 VEKIPMTASGYKKLEDELGILK-VKRIAVIEEMRLAALDKDMRENAPYHAAKEQRGQIEG 73
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E+ + AEV + + + ++ G TV L + +G++ Y +V +E + G +S
Sbjct: 74 RIKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRIS 133
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SSPI +AL + GD I + P G Y I + +
Sbjct: 134 ASSPIGKALFNRSKGDNIEIEVPSGTLQYVIEDISF 169
>gi|326798984|ref|YP_004316803.1| transcription elongation factor GreA [Sphingobacterium sp. 21]
gi|326549748|gb|ADZ78133.1| transcription elongation factor GreA [Sphingobacterium sp. 21]
Length = 157
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/156 (40%), Positives = 99/156 (63%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D + +G +K+++EL++ + E R I +AI+EAR GDLSENAEY AAKE Q L+E
Sbjct: 1 MADVTYYSKEGLEKLKEELQYLKTEGRAAIARAIAEARDKGDLSENAEYDAAKEAQGLHE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A+LE ++ A +ID S + ++ + V L +G YQ+V + EAD++SG +
Sbjct: 61 AKIAKLEEVLANARLIDESKLDVTKVLALSIVKLKNTKNGAIMTYQLVSETEADLKSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+ SPIA+ L+GK +GD + P G+ EIL++
Sbjct: 121 SVKSPIAQGLLGKSVGDKAEIEVPAGKIELEILEIS 156
>gi|237748857|ref|ZP_04579337.1| transcription elongation factor and transcript cleavage
[Oxalobacter formigenes OXCC13]
gi|229380219|gb|EEO30310.1| transcription elongation factor and transcript cleavage
[Oxalobacter formigenes OXCC13]
Length = 184
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G ++ EL +ERP++++ +S A + GD SEN +Y K + R+
Sbjct: 27 KNYITPAGLKSLKDELLSLIDKERPQVVQIVSWAASNGDRSENGDYIYGKRRLREIDRRI 86
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I AE D S G D+I FGATV+ E+ G++ IVG E D G +S
Sbjct: 87 RFLIKRIEAAEEFDPSIHYGNDQIFFGATVTY-EREDGEENTITIVGIDEFDPLEGRISW 145
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A+ LI GD ++++ P G + IL+V +
Sbjct: 146 ISPMAKTLIKAREGDTVTLHTPAGIEELVILEVNY 180
>gi|116747675|ref|YP_844362.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans
MPOB]
gi|116696739|gb|ABK15927.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans
MPOB]
Length = 155
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 83/153 (54%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+P+T G+ ++ +EL + + RP +I+ + EAR G EN +Y A+E + + ++
Sbjct: 2 KVPITRLGYHRLLRELFFLRHVVRPEVIEELQEARTGGIKIENQQYMLARERHMVLQKKI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LE + E++ + FG V + +G+ + YQ+VG E++V G +SI
Sbjct: 62 QDLERKLASCEIVVGRKFFFKQAEFGTIVVIQNIETGETQRYQLVGPYESNVVDGKLSID 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ R L+G+ G+ + V P G + Y ++ +
Sbjct: 122 SPVGRHLVGRREGEEVLVYTPAGVRMYRVVSIT 154
>gi|167751089|ref|ZP_02423216.1| hypothetical protein EUBSIR_02074 [Eubacterium siraeum DSM 15702]
gi|167656007|gb|EDS00137.1| hypothetical protein EUBSIR_02074 [Eubacterium siraeum DSM 15702]
Length = 156
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 93/155 (60%), Gaps = 1/155 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +TS+G +++ L + R I + I A ++GDLSEN+EY AK Q + E
Sbjct: 1 MATQTTLTSQGLKDLEERLEHLKSVTRKEIAEKIKVALSFGDLSENSEYDEAKNEQGIVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+AE+E + A+V+D +S + + G TV + + SG K + +VG +E D+++ +
Sbjct: 61 AEIAEIEATLKNAKVVDEDELSTEHVNIGNTVVIED-ESGKKIKFFLVGSKEVDMKAMKI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +A IG++LG+ +SV AP G K Y+I+++
Sbjct: 120 SDESPIGKACIGRKLGEEVSVEAPAGVKKYKIVEI 154
>gi|291166186|gb|EFE28232.1| transcription elongation factor GreA [Filifactor alocis ATCC 35896]
Length = 161
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 2/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++ +T G+ KI++EL + + R + + I A ++GD+SENAEY AK Q E R
Sbjct: 9 EEALITQSGYQKIEEELEYLKATRRLEVAERIKVALSFGDISENAEYDEAKNEQAQLEER 68
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+++LENI+ A ++D S + D + G+ V L + G+ + Y IVG E+D S +S
Sbjct: 69 ISKLENILRTAVIVDESKLEHDVVNIGSWVKLDYE--GEIEEYTIVGSAESDPSSSKISN 126
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+PI +AL+G+ G+ I V P G +IL+V
Sbjct: 127 EAPIGKALMGRREGESIEVQVPNGVVNIKILEVR 160
>gi|325479434|gb|EGC82530.1| transcription elongation factor GreA [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 157
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 94/154 (61%), Gaps = 1/154 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++ ++ + +K++ EL + + ++RP I + I AR++GDLSENA+Y AK Q E R
Sbjct: 5 KEVILSKEYLEKLEDELEYLKTKKRPEIAEKIKVARSFGDLSENADYDEAKNEQGEVESR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A++E++I A+ I+++ S D + G TV++ ++ + Y+IVG E++ G +S
Sbjct: 65 IAKVEDMIRNAKTIEVNENS-DEVGVGNTVTVYDEEFDEDLEYKIVGTAESNPLEGFISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ALIGK++ + + V+ P G+ + I +
Sbjct: 124 ESPVGAALIGKKVNERVEVSTPNGKMYFVIKNIK 157
>gi|312868364|ref|ZP_07728564.1| transcription elongation factor GreA [Streptococcus parasanguinis
F0405]
gi|322390081|ref|ZP_08063616.1| transcription elongation factor GreA [Streptococcus parasanguinis
ATCC 903]
gi|311096109|gb|EFQ54353.1| transcription elongation factor GreA [Streptococcus parasanguinis
F0405]
gi|321143208|gb|EFX38651.1| transcription elongation factor GreA [Streptococcus parasanguinis
ATCC 903]
Length = 160
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +K++QEL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLAEKEKLEQELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE++D ++ D +A G TV++ E D++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVDSDAVAVDEVAIGKTVTVQEVGETDEEVYSIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI ALIGK+ GD+++V P G +IL V
Sbjct: 121 ISNESPIGHALIGKKTGDVVTVETPAGSYQVKILNVE 157
>gi|254513872|ref|ZP_05125933.1| transcription elongation factor GreB [gamma proteobacterium NOR5-3]
gi|219676115|gb|EED32480.1| transcription elongation factor GreB [gamma proteobacterium NOR5-3]
Length = 167
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G +++ EL ++ERP + A+ +A GD SEN +Y K+ + R+ +
Sbjct: 15 ITAAGEARLRAELDNLWRKERPVVALAVQDAAKNGDRSENGDYIYGKKRLREIDSRVRFI 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ + RI FGATV + ++++ + I+G E + G VSI SPI
Sbjct: 75 SKRLESLQVVRETPSDTSRIFFGATVEVEDQHA-VIQTITILGPDEFESSRGEVSIDSPI 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
AR L+GK +GD + + +PGGE+ E+L + +
Sbjct: 134 ARVLLGKSVGDSVRLESPGGERELEVLDIRY 164
>gi|282880637|ref|ZP_06289343.1| putative transcription elongation factor GreA [Prevotella
timonensis CRIS 5C-B1]
gi|281305532|gb|EFA97586.1| putative transcription elongation factor GreA [Prevotella
timonensis CRIS 5C-B1]
Length = 155
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 89/151 (58%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+D + EL + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ +
Sbjct: 3 YMSQEGYDNLVAELNRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ I A+++D+S +S + + + V + + K Y IV + EAD+++G +SI +P
Sbjct: 63 MKLTIAEAKIVDVSRLSANMVQILSKVEMTNLKTKSKMTYTIVSESEADLKAGKISIKTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ K++GD + + P G I +
Sbjct: 123 IAQGLLNKKVGDEVEIKIPAGTIHLRIDNIS 153
>gi|57234441|ref|YP_181502.1| transcription elongation factor GreA [Dehalococcoides ethenogenes
195]
gi|123759708|sp|Q3Z8E7|GREA_DEHE1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|57224889|gb|AAW39946.1| transcription elongation factor GreA [Dehalococcoides ethenogenes
195]
Length = 156
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV+KIP+T+ G+ K++ EL + +R +I+ + A D+ ENA Y AAKE + E
Sbjct: 1 MVEKIPMTASGYKKLEDELSTLK-VKRIDVIEEMRLAAMDKDMRENAPYHAAKEQRGQIE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ E+E+ + A+V + + + ++ G+TV L + +G+ Y +V +E + G +
Sbjct: 60 GRIKEIEHELKYADVSEYTDTNTSKVNMGSTVKLRDPKNGECCTYTLVSPKEIEPLKGKI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S SSPI +A+ + G+ I + P G Y I + +
Sbjct: 120 SASSPIGKAVFNRNKGEQIEIEVPSGTLQYIIEDISF 156
>gi|270290410|ref|ZP_06196635.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4]
gi|270281191|gb|EFA27024.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4]
Length = 161
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 2/158 (1%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M D + P+T G K+++EL + E RP++I+ I AR++GDLSEN+EY++AK+ Q++
Sbjct: 1 MADEKRYPMTLDGKQKLEEELETLKTETRPQVIEQIKIARSFGDLSENSEYESAKDEQSM 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ +E+++ AE+ID + + ++ G V E + + Y IVG EAD SG
Sbjct: 61 VESRINTIEHMLHYAEIIDDEAIDSNEVSLGRVVEFQELPDEEPEEYTIVGAAEADPMSG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ L+GK++GD++++ PGG+ +IL V
Sbjct: 121 KISNDSPIAKGLLGKKVGDVVTIATPGGDMKVKILTVK 158
>gi|91202565|emb|CAJ72204.1| hypothetical protein kustd1459 [Candidatus Kuenenia
stuttgartiensis]
Length = 741
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 83/154 (53%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI VT G++K ++EL + + + EA + GDL ENAEYQAA+E Q +
Sbjct: 585 NKIYVTKHGYEKQKKELDNIMNIQFAENARDLGEAISRGDLRENAEYQAAREKQAQLIEK 644
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L+ + + I+ T+ + ++ G V++ K+ + Y ++G +AD+ ++S
Sbjct: 645 AERLKADLQKIVFIEPYTVKTNIVSPGTKVTIKNKDKETTETYTLLGPWDADIDKNIISY 704
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPI + L+ K+ G+ +++ P E +I+++
Sbjct: 705 LSPIGKGLLNKKTGETVTIQLPENEIVCDIIKIE 738
>gi|262371975|ref|ZP_06065254.1| transcription elongation factor GreB [Acinetobacter junii SH205]
gi|262312000|gb|EEY93085.1| transcription elongation factor GreB [Acinetobacter junii SH205]
Length = 162
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G D + EL+ +ERP I K ++ A + GD SENA+YQ K+L +
Sbjct: 1 MKSNLITRTGHDLLVAELKKLWHDERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLV 120
R+ L + +++D ++ FGA V + ++G++K +IVG D+ D +
Sbjct: 61 RVRYLGKRLEELKIVDYVPEQEGKVYFGAWVEIEN-DAGEQKTLRIVGVDEIYDHHPQHI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ D + V P G+K + I + +
Sbjct: 120 SIESPMARALLSKQVDDEVEVITPLGKKLWYINSIRY 156
>gi|269125318|ref|YP_003298688.1| transcription elongation factor GreA [Thermomonospora curvata DSM
43183]
gi|268310276|gb|ACY96650.1| transcription elongation factor GreA [Thermomonospora curvata DSM
43183]
Length = 166
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 2/150 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D+++ EL + R I + I AR GDL EN Y AAKE Q EGR+ +
Sbjct: 11 WLTQEAYDRLKAELEYLSGPGRIEIAQKIEAAREEGDLRENGGYHAAKEEQGKIEGRILQ 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L++I+ + V + G + G TV++ ++ ++ + + +E+ + S SP
Sbjct: 71 LQHILENSRVGEAPRTDG-VVGPGMTVTVAFEDDDEELTFLLASREESGAPIDVYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQ 154
+ A+ GK++G+ + P G T EIL
Sbjct: 130 LGSAINGKKVGEKATYTLPNGRSMTVEILD 159
>gi|323341649|ref|ZP_08081882.1| transcription elongation factor GreA [Erysipelothrix rhusiopathiae
ATCC 19414]
gi|322464074|gb|EFY09267.1| transcription elongation factor GreA [Erysipelothrix rhusiopathiae
ATCC 19414]
Length = 156
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 2/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++IPVT G D++ +ELR + ERP +I+ + ARA GDLSENA+Y AA++ Q E
Sbjct: 1 MTERIPVTQAGLDELNRELRQLIEVERPEVIEDLKAARAQGDLSENADYDAARDRQARVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ E+E +T+ E+ID + + GATV++ + ++ + IVG EAD ++G
Sbjct: 61 ARIREIEATLTKVEIIDGDKAKKHKTVGLGATVTIYDMEMEIEETFSIVGSVEADPENGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+A+A+ + GD++ V ++L++
Sbjct: 121 LSNVSPLAQAMNEAKEGDVVEVQV-DEPYEVKVLKI 155
>gi|227888966|ref|ZP_04006771.1| transcription elongation factor GreA [Lactobacillus johnsonii ATCC
33200]
gi|268318753|ref|YP_003292409.1| Transcription elongation factor greA [Lactobacillus johnsonii
FI9785]
gi|227850554|gb|EEJ60640.1| transcription elongation factor GreA [Lactobacillus johnsonii ATCC
33200]
gi|262397128|emb|CAX66142.1| Transcription elongation factor greA [Lactobacillus johnsonii
FI9785]
Length = 153
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK +
Sbjct: 1 MVYYQKMTPEGYQEIKDEIARLKK-DRPRRIKILQEARSMGDLSENSEYTTAKMELGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L+ + +E+I I G+ V+L+ + + Y+IVG EAD+ G +
Sbjct: 60 SRLRYLDKQLRYSEII--QKDESGTIDLGSNVTLLFDGDDEAEKYRIVGRMEADLAKGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+ K+ G ++V AP G +I+ V
Sbjct: 118 SFDSPLGQALMKKKAGATVTVEAPAGSYDVKIIAV 152
>gi|148544438|ref|YP_001271808.1| transcription elongation factor GreA [Lactobacillus reuteri DSM
20016]
gi|184153802|ref|YP_001842143.1| transcription elongation factor GreA [Lactobacillus reuteri JCM
1112]
gi|194466620|ref|ZP_03072607.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23]
gi|227363134|ref|ZP_03847269.1| elongation factor GreA [Lactobacillus reuteri MM2-3]
gi|227543959|ref|ZP_03974008.1| elongation factor GreA [Lactobacillus reuteri CF48-3A]
gi|300909709|ref|ZP_07127170.1| transcription elongation factor GreA [Lactobacillus reuteri SD2112]
gi|325682760|ref|ZP_08162276.1| transcription elongation factor GreA [Lactobacillus reuteri MM4-1A]
gi|148531472|gb|ABQ83471.1| transcription elongation factor GreA [Lactobacillus reuteri DSM
20016]
gi|183225146|dbj|BAG25663.1| transcription elongation factor GreA [Lactobacillus reuteri JCM
1112]
gi|194453656|gb|EDX42553.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23]
gi|227071852|gb|EEI10140.1| elongation factor GreA [Lactobacillus reuteri MM2-3]
gi|227186075|gb|EEI66146.1| elongation factor GreA [Lactobacillus reuteri CF48-3A]
gi|300893574|gb|EFK86933.1| transcription elongation factor GreA [Lactobacillus reuteri SD2112]
gi|324977110|gb|EGC14061.1| transcription elongation factor GreA [Lactobacillus reuteri MM4-1A]
Length = 158
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 59/157 (37%), Positives = 103/157 (65%), Gaps = 2/157 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T +G K++ EL + + RP +IK I AR+YGDLSEN+EY++AK+ Q +
Sbjct: 1 MAEEKTFPMTLEGKKKLEDELEEYRLKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAM 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+A++EN++ AE+ID + D ++ G T+++ E + + YQIVG+ E+D +G
Sbjct: 61 VESRIAQIENMLQYAEIIDNEDVDKDEVSMGRTITIQELPDEEPEEYQIVGESESDPFNG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+A+ L+G ++G+++ V P G +I++V
Sbjct: 121 KISNESPMAKGLLGHKVGEVVEVEVPNGTIKLKIVKV 157
>gi|118581707|ref|YP_902957.1| transcription elongation factor GreB [Pelobacter propionicus DSM
2379]
gi|118504417|gb|ABL00900.1| transcription elongation factor GreB [Pelobacter propionicus DSM
2379]
Length = 157
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 48/149 (32%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G K++ E + + ERP++++ +S+A A GD SENAEY K+ + ++ L
Sbjct: 5 ITAEGLKKLEAEFDYLWRVERPKVVRGVSDAAAEGDRSENAEYIYGKKRLREIDRKLKHL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V + + FG VS +++ G + YQ+VG E DV SG +SI SP+
Sbjct: 65 GSRLKLLKV-RSLPAKPESVGFGCWVSYEDED-GAGRCYQLVGPDEFDVSSGRISIDSPV 122
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GK + D ++++ P G+ T I +
Sbjct: 123 GQALLGKRVDDEVTISRPNGDLTVYITAI 151
>gi|304383994|ref|ZP_07366450.1| transcription elongation factor GreA [Prevotella marshii DSM 16973]
gi|304334886|gb|EFM01160.1| transcription elongation factor GreA [Prevotella marshii DSM 16973]
Length = 202
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 93/151 (61%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ EL+ + ERP+I AI+EAR GDLSEN+EY+AAKE Q E R+ +
Sbjct: 50 YMSQEGYDKMIAELQRLEAVERPKISAAIAEARDKGDLSENSEYEAAKEAQAHLEDRINK 109
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ I A+++D S +S + + + V + + K Y IV + EA+++ G ++I++P
Sbjct: 110 MKRTIAEAKIVDTSRLSNEAVQILSKVEMTNLGNKAKMTYTIVSENEANLKEGKIAITTP 169
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ K++GD + + P G I ++
Sbjct: 170 IAQGLLNKKVGDEVEIAIPRGTIKLRIDKIS 200
>gi|296875962|ref|ZP_06900021.1| transcription elongation factor GreA [Streptococcus parasanguinis
ATCC 15912]
gi|296433037|gb|EFH18825.1| transcription elongation factor GreA [Streptococcus parasanguinis
ATCC 15912]
Length = 160
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +K++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLAEKEKLELELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE++D ++ D +A G TV++ E D++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVDSDAVAVDEVAIGKTVTVQEVGETDEEVYSIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI ALIGK+ GD+++V P G +IL V
Sbjct: 121 ISNESPIGHALIGKKTGDVVTVETPAGSYQVKILNVE 157
>gi|303256877|ref|ZP_07342891.1| transcription elongation factor GreB [Burkholderiales bacterium
1_1_47]
gi|330998874|ref|ZP_08322601.1| transcription elongation factor GreB [Parasutterella
excrementihominis YIT 11859]
gi|302860368|gb|EFL83445.1| transcription elongation factor GreB [Burkholderiales bacterium
1_1_47]
gi|329576088|gb|EGG57607.1| transcription elongation factor GreB [Parasutterella
excrementihominis YIT 11859]
Length = 191
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T ++++ E + ERP ++ ++ A + GD SENA+YQ K+ + R+
Sbjct: 27 KNYMTRACYNRLLDERKNLVLVERPNVVNVVAWAASNGDRSENADYQYGKQRLREIDRRI 86
Query: 64 AELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I +EVIDI D+I FGAT+ GD+ +IVG EAD G VS
Sbjct: 87 RFLNKRIEASEVIDIDKRPPTDQIFFGATIVYAN-EQGDESKIRIVGIDEADASVGDVSW 145
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SPIAR + GD + + P G K EIL+V ++
Sbjct: 146 ISPIARVFLKHFEGDTVLLPTPKGVKKLEILEVTYV 181
>gi|281421109|ref|ZP_06252108.1| transcription elongation factor GreA [Prevotella copri DSM 18205]
gi|281404644|gb|EFB35324.1| transcription elongation factor GreA [Prevotella copri DSM 18205]
Length = 155
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 53/152 (34%), Positives = 88/152 (57%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ EL+ ERP+ AI+EAR GDLSEN+EY AAKE Q E ++
Sbjct: 3 YMSQEGYDKLVAELKQLVSVERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINR 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I A++ID +S D + + V + + K Y IV + EA+++ G +SI +P
Sbjct: 63 LKLTIAEAKIIDTKQLSTDSVQIMSKVEMTNMANKAKMTYTIVSESEANLKEGKISIKTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+ K++G++ + P G I ++ +
Sbjct: 123 IAQGLLNKKVGEVAEIKIPRGTINLRIDKISF 154
>gi|78776745|ref|YP_393060.1| GreA/GreB family elongation factor [Sulfurimonas denitrificans DSM
1251]
gi|78497285|gb|ABB43825.1| GreA/GreB family elongation factor [Sulfurimonas denitrificans DSM
1251]
Length = 174
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 52/154 (33%), Positives = 97/154 (62%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ P++ +G+D + +E ++ + E+P+ + A A GD SENA+YQAAKE + R+
Sbjct: 2 QEPMSIEGYDVLIEEFKFLLEVEKPKTAQEKLVAAALGDRSENADYQAAKEKLRHIDKRL 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L +I +A +ID ST+ +++FG++V +++ S ++ Y I G E++ ++GL+SI
Sbjct: 62 FYLNAMIQKAHIIDPSTLLHTKVSFGSSVRILDLESDKEEVYTICGVLESEPENGLISIH 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+A+ ++GK + D + P +K YEIL++ +
Sbjct: 122 SPLAQVMLGKRVSDEFKIQLPLMKKEYEILEIYY 155
>gi|291556889|emb|CBL34006.1| transcription elongation factor GreA [Eubacterium siraeum V10Sc8a]
Length = 156
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 92/155 (59%), Gaps = 1/155 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +TS+G +++ L + R I + I A ++GDLSEN+EY AK Q + E
Sbjct: 1 MATQTTLTSQGLKDLEERLEHLKSVTRKEIAEKIKVALSFGDLSENSEYDEAKNEQGIVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+AE+E + A+V+D +S + + G TV + + SG K + +VG +E D+++ +
Sbjct: 61 AEIAEIEATLKNAKVVDEDELSTEHVNIGNTVVIED-ESGKKIKFFLVGSKEVDMKAMKI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SPI +A IG++LG+ + V AP G K Y+I+++
Sbjct: 120 SDESPIGKACIGRKLGEEVLVEAPAGVKKYKIVEI 154
>gi|58040290|ref|YP_192254.1| transcription elongation factor GreB [Gluconobacter oxydans 621H]
gi|58002704|gb|AAW61598.1| Transcription elongation factor GreB [Gluconobacter oxydans 621H]
Length = 168
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 57/162 (35%), Positives = 93/162 (57%), Gaps = 6/162 (3%)
Query: 1 MVDKIPVT----SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQ 56
M +K P++ KG ++ EL+ Q+ERPRI++ +S A GD SENA+YQ K
Sbjct: 1 MAEKTPLSHYLSPKGAVVMRAELKELAQKERPRIVEIVSWAAGNGDRSENADYQYGKRRL 60
Query: 57 NLNEGRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
+ RM L + A ++D + + DR+ FGATV+ V+++ + I+G E+D+
Sbjct: 61 REIDRRMRFLGKRLENAVIVDPAAQTTRDRVFFGATVTYVDEDD-VEHTVTILGVDESDL 119
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
G VS+ SP+ARAL+ +GD+ + P G EIL++++
Sbjct: 120 ARGEVSLMSPVARALMRTRVGDVAMLQTPRGPVEIEILKIVY 161
>gi|301299802|ref|ZP_07206044.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852615|gb|EFK80257.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 157
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 2 VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
+ KI +T G+ +I+ E+ + +RP IK + EARA GDLSENAEY AAK
Sbjct: 1 MPKIYFQKMTPNGYKQIEDEIEQLKL-DRPAKIKQLQEARALGDLSENAEYSAAKRDLRH 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQS 117
E R+ L + AE+I + + D + G TV++ + + D + YQIVG QE +V
Sbjct: 60 LESRLRYLNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDD 117
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI +A++ K++G +V AP G T +I+ +
Sbjct: 118 NKISFVSPIGKAIMHKKVGHTATVVAPAGSYTVKIISIS 156
>gi|189485414|ref|YP_001956355.1| transcription elongation factor GreA [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287373|dbj|BAG13894.1| transcription elongation factor GreA [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 158
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 89/155 (57%), Gaps = 2/155 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +I +T +G K+ +EL Q+ + P I I+ AR +GDL ENAEY AAKE
Sbjct: 1 MSEIYLTREGRKKLIKELNELQKRK-PLIQDEIASAREHGDLRENAEYCAAKETLANLIR 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ EL + I A++I+ + D++ G TV++ + G Y IV +EAD + +S
Sbjct: 60 RIMELTSKIACAKIIEEQNIDSDKVFIGVTVTIKD-EYGADYQYAIVDLEEADPVANRIS 118
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
I SP+A+ L+G G+ ++V P G+ ++IL++
Sbjct: 119 IQSPLAQGLLGHTAGETVAVELPAGKTKFKILKIS 153
>gi|92114676|ref|YP_574604.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM
3043]
gi|91797766|gb|ABE59905.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM
3043]
Length = 178
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G+ +++ + +RP + + EA A GD SENA+Y K+ N R+ L
Sbjct: 25 ITARGYARLKGIHEHLSRVKRPALSTKVGEAAALGDRSENADYTYNKKELNRVIARIRYL 84
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+D R+ FGA V+L + + G++ +IVG E D +S+ +P+
Sbjct: 85 GKRLDELQVVDRLPADTSRVYFGAYVTLED-DDGEEMTIRIVGHDETDTDKRWISVDAPL 143
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
A+A++GK L + ++VNAPGG+ TY I + +
Sbjct: 144 AQAMLGKGLDEDVTVNAPGGDTTYIITDIAY 174
>gi|320547393|ref|ZP_08041681.1| transcription elongation factor GreA [Streptococcus equinus ATCC
9812]
gi|320447938|gb|EFW88693.1| transcription elongation factor GreA [Streptococcus equinus ATCC
9812]
Length = 178
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T ++++QEL + RP +++ I AR+YGDLSEN+EY AAK+ Q
Sbjct: 19 MAEKTYPMTLAEKEQLEQELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 78
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG++ +E I AE+ID ++ D +A G TV++ E ++ DK Y IVG AD+ +G
Sbjct: 79 EGQIQIIETKIRYAEIIDSDAVAKDEVAIGKTVTVQEVSTTDKDVYHIVGAAGADIFAGR 138
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK+ GDI+++ +P G EI+ V
Sbjct: 139 ISNESPIAQALIGKKTGDIVTIESPAGNYDVEIISVE 175
>gi|291544387|emb|CBL17496.1| transcription elongation factor GreA [Ruminococcus sp. 18P13]
Length = 156
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 90/155 (58%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K ++ +G++K++Q+L + R + + + EAR++GDLSENAEY AK Q + E
Sbjct: 1 MAKKQMSREGYEKLEQKLSYLITVRRAEVAQKLKEARSFGDLSENAEYDEAKNEQGILEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+AEL+ + AE+++ +S D I G+ + + + + QIVG EA+ + G +S
Sbjct: 61 EIAELQITLENAEIVEDDNISVDEIGMGSIIEIRRVGTDKIERLQIVGTNEANFKEGKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPI ++ + K +GD V AP GE +E++ +
Sbjct: 121 DESPIGKSALKKRVGDTFLVEAPAGELEFEVVAIS 155
>gi|257066134|ref|YP_003152390.1| transcription elongation factor GreA [Anaerococcus prevotii DSM
20548]
gi|256798014|gb|ACV28669.1| transcription elongation factor GreA [Anaerococcus prevotii DSM
20548]
Length = 157
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 93/154 (60%), Gaps = 1/154 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++ ++ + +K++ EL + + ++RP I + I AR++GDLSENA+Y AK Q E R
Sbjct: 5 KEVILSKEYLEKLEDELEYLKTKKRPEIAEKIKVARSFGDLSENADYDEAKNEQGEVESR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A++E++I A+ I++ S D + G TV++ ++ + Y+IVG E++ G +S
Sbjct: 65 IAKVEDMIRNAKTIEVIENS-DEVGVGNTVTVYDEEFDEDLEYKIVGTAESNPLEGFISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ALIGK++ + + V+ P G+ + I +
Sbjct: 124 ESPVGAALIGKKVDERVEVSTPNGKMYFVIKNIK 157
>gi|307295011|ref|ZP_07574853.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum
L-1]
gi|306879485|gb|EFN10703.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum
L-1]
Length = 160
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +GF K++ E ERP+I++ +S A GD SEN +Y ++ +G++
Sbjct: 7 YITPEGFAKLRAEYDQLLGHERPKIVEVVSWAAGNGDRSENGDYLYGRKRMREIDGQLKR 66
Query: 66 LENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + A+V+D ++ FGATV++ +++ ++ +VG+ E + +G + S+
Sbjct: 67 LSRKMKDAKVVDPRQQPDKSKVYFGATVTIADEDD-KRRTVTLVGNDETEASAGRIGWST 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
PIARAL G +GD+ V P GEK YE++++ +
Sbjct: 126 PIARALRGAAVGDLRRVILPAGEKEYEVMEIRY 158
>gi|310658260|ref|YP_003935981.1| transcription elongation factor [Clostridium sticklandii DSM 519]
gi|308825038|emb|CBH21076.1| transcription elongation factor [Clostridium sticklandii]
Length = 164
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+I +T +GF KI+ EL + R + + I A ++GD+SEN+EY AK Q E R
Sbjct: 6 KEILLTEEGFKKIEDELELLKTVRRKEVAERIKVAISFGDISENSEYDEAKNEQAQLEER 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEK----NSGDKKNYQIVGDQEADVQSG 118
+ +LENI+ A +ID S++ + + G+ V + K + ++ Y IVG EAD
Sbjct: 66 ILKLENILRVAVIIDESSIDTNLVTVGSVVKIEFKDALTDEVEEDEYTIVGSAEADPSES 125
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI +AL+G+ +GD I V P G +IL++
Sbjct: 126 KISNESPIGKALLGRVVGDEIDVQVPDGISKIKILEIR 163
>gi|218660639|ref|ZP_03516569.1| transcription elongation factor GreA [Rhizobium etli IE4771]
Length = 119
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 77/118 (65%), Positives = 96/118 (81%)
Query: 40 YGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS 99
ENAEY AAKE Q+ NEGR++EL+++ RAEVID++ MSGD+I FGA V LV++++
Sbjct: 1 MATFPENAEYHAAKEAQSHNEGRISELKDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDT 60
Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++K YQIVGDQEADV++G +SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 61 EEEKTYQIVGDQEADVKAGRISISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 118
>gi|262340920|ref|YP_003283775.1| transcription elongation factor GreA [Blattabacterium sp.
(Blattella germanica) str. Bge]
gi|262272257|gb|ACY40165.1| transcription elongation factor GreA [Blattabacterium sp.
(Blattella germanica) str. Bge]
Length = 160
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 58/158 (36%), Positives = 98/158 (62%), Gaps = 2/158 (1%)
Query: 2 VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++K +T +G K+Q+E+ + ERP+I I+EAR GDLSENAEY A KE Q E
Sbjct: 1 MEKFEYITKEGLKKLQKEIERLENIERPKISMQIAEARDKGDLSENAEYDAIKEAQGFLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+A+L+ ++ A +ID + ++ R++ +TV + G ++ Y +V + EAD++SG +
Sbjct: 61 MNIAKLKKKLSNARIIDGTQINRTRVSILSTVRVKNLTYGGEQIYTLVPEGEADLKSGKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
SI++PI+ L+GK++G I + P YEIL++ +
Sbjct: 121 SINTPISTGLLGKQVGQIAHIKLPNKMILDYEILEIAF 158
>gi|255671638|gb|ACU26399.1| transcription elongation factor [uncultured bacterium
HF186_25m_30B18]
gi|255671676|gb|ACU26436.1| transcription elongation factor [uncultured bacterium
HF186_75m_14K15]
gi|255671727|gb|ACU26485.1| transcription elongation factor [uncultured bacterium
HF186_25m_13D19]
Length = 163
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 1/155 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +GF++++ E ERP I+ ++ A A GD SENAEY K+ + R+
Sbjct: 5 KNYITPRGFNRLRAEHDQLWFVERPHIVDEVARAAAMGDRSENAEYIYGKKRLREIDRRL 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L + E++D + G+RI FGATV+L + G +K +VG E +V +S
Sbjct: 65 RWLNKRLDMTEIVDPAIDRGERIFFGATVTLGYMD-GTEKQVALVGVDEIEVDKQRISWR 123
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ R LIGK GD +++N G EIL+V ++
Sbjct: 124 SPLGRLLIGKSEGDEVTLNHAGEVTPIEILEVAYL 158
>gi|58578740|ref|YP_196952.1| transcription elongation factor greA [Ehrlichia ruminantium str.
Welgevonden]
gi|58616800|ref|YP_195999.1| transcription elongation factor greA [Ehrlichia ruminantium str.
Gardel]
gi|58416412|emb|CAI27525.1| Transcription elongation factor greA [Ehrlichia ruminantium str.
Gardel]
gi|58417366|emb|CAI26570.1| Transcription elongation factor greA [Ehrlichia ruminantium str.
Welgevonden]
Length = 166
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 74/163 (45%), Positives = 115/163 (70%), Gaps = 6/163 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ P+T GF+K++ E + ERP+IIK+ISEAR GDLSENAEY AA+E Q L E
Sbjct: 5 MNERFPITKAGFEKLELE-LESLKYERPQIIKSISEARELGDLSENAEYHAARERQGLVE 63
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSG--DKKNYQIVGDQEADVQ 116
++ ELE+ +RAEVID++ +SGD + FGATV+ + ++ +G D+ YQIVG+ E+D+
Sbjct: 64 SKIMELESKKSRAEVIDVANLSGDTVMFGATVTMSIYDEQTGSTDEVIYQIVGEYESDIS 123
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
++SI SP+ +L+GK+ GD++ V P G+ Y+I+++ +I
Sbjct: 124 KRMISIKSPLVISLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 166
>gi|289422572|ref|ZP_06424415.1| transcription elongation factor GreA [Peptostreptococcus anaerobius
653-L]
gi|289157144|gb|EFD05766.1| transcription elongation factor GreA [Peptostreptococcus anaerobius
653-L]
Length = 161
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 96/155 (61%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+I +T +GFDK+++EL + R + + + A ++GDLSENAEY AK+ Q E
Sbjct: 6 SKEIILTQEGFDKLEEELELLKTTRRKEVAERLKVAISFGDLSENAEYDEAKKEQAALEE 65
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LEN++ +A +ID S++ D I G+ V + +++ ++ Y IVG EAD +G +S
Sbjct: 66 RIIKLENMVRKAVIIDESSVDLDVITIGSIVRIYDEDFDEEVEYSIVGSAEADPYNGKIS 125
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ++L+G ++GD++ VN P G ++L +
Sbjct: 126 NESPVGKSLLGSKIGDVVEVNVPDGIIKLKVLDIK 160
>gi|189424976|ref|YP_001952153.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ]
gi|189421235|gb|ACD95633.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ]
Length = 157
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 87/152 (57%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+TS+G ++Q E + + ERP++++ +S+A A GD SENAEY K+ + ++ +L
Sbjct: 5 ITSQGLKRLQDEFEYLWRVERPKVVQGVSDAAAEGDRSENAEYIYGKKRLREIDRKLKQL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ E+ + R++FG VS + G+ YQ+ G E DV+ G++SI SP+
Sbjct: 65 GGRLKVLEIAPAPPQNPVRVSFGCWVSYEDLE-GNSYCYQLGGPDEFDVKQGVISIDSPV 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AL+ +++ D +++ PGG+ I ++ I
Sbjct: 124 GQALLHRQVDDEVTIRRPGGDLVVYITEIRTI 155
>gi|284033490|ref|YP_003383421.1| transcription elongation factor GreA [Kribbella flavida DSM 17836]
gi|283812783|gb|ADB34622.1| transcription elongation factor GreA [Kribbella flavida DSM 17836]
Length = 169
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T G+D+++ EL + R I + ISEAR GDL EN Y AAK+ Q E R+
Sbjct: 10 VWLTQDGYDQLKSELEHLKGPARAEITQRISEARDEGDLKENGGYHAAKDEQGKIEARIR 69
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ----EADVQSGLV 120
+LE+++ RA V + G + G VS+ D + + + + + V +
Sbjct: 70 QLEDMLRRARVGETPKDDG-VVEPGMKVSITFAGDDDVETFLLGSRELLALDTSVDIDVY 128
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
S SP+ A++GK+ GD + AP G + T EI+
Sbjct: 129 SPQSPLGAAIMGKKKGDKATYEAPNGKDVTVEIVA 163
>gi|90961105|ref|YP_535021.1| transcription elongation factor GreA [Lactobacillus salivarius
UCC118]
gi|90820299|gb|ABD98938.1| Transcription elongation factor [Lactobacillus salivarius UCC118]
Length = 157
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 2 VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
+ KI +T G+ +I+ E+ + +RP IK + EARA GDLSENAEY AAK
Sbjct: 1 MPKIYFQKMTPNGYKQIEDEIEQLKL-DRPAKIKQLQEARALGDLSENAEYSAAKRDLRH 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQS 117
E R+ L + AE+I + + D + G TV++ + + D + YQIVG QE +V
Sbjct: 60 LESRLRYLNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDD 117
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI +A++ K++G +V AP G T +I+ +
Sbjct: 118 NKISFVSPIGKAIMHKKVGHTATVIAPAGSYTVKIISIS 156
>gi|300871555|ref|YP_003786428.1| GreA/GreB family elongation factor [Brachyspira pilosicoli 95/1000]
gi|300689256|gb|ADK31927.1| GreA/GreB family elongation factor [Brachyspira pilosicoli 95/1000]
Length = 154
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/151 (39%), Positives = 99/151 (65%), Gaps = 1/151 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G+DK++++L + E + I+EAR GDL ENAEY AA+E Q L + ++++
Sbjct: 4 PITKEGYDKVKEKLSELKAEFDT-LPAIIAEAREKGDLKENAEYHAAREKQGLLQAQISK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE+ + E++D S M+ D + FG V + +KNS Y+IVG+ EAD+ ++I +P
Sbjct: 63 LESDLAVCEIVDPSKMNKDIVTFGKRVKVKDKNSNAVSEYRIVGELEADMSKNEITIVTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IAR L+ K++GD++++ P G+K EIL++
Sbjct: 123 IARGLLTKKVGDVVTIKVPAGDKVLEILEIS 153
>gi|220917962|ref|YP_002493266.1| transcription elongation factor GreB [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955816|gb|ACL66200.1| transcription elongation factor GreB [Anaeromyxobacter dehalogenans
2CP-1]
Length = 163
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +GF ++ E E RPRI+ + A A GD SENAEY K+ + R+
Sbjct: 7 YITPEGFRRLAAEHARIWTELRPRIVAEVEAAAALGDRSENAEYIYGKKKLRELDRRLRF 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V++ R FGA V++ E+ G + ++VG E DV +GL+S+ +P
Sbjct: 67 LSEKMDSLSVVEPRAHPDGRAFFGAWVTV-EQEDGQARRVRLVGPDEFDVAAGLISVDAP 125
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ RAL+GK GD++ V+ P G +++V W
Sbjct: 126 LGRALLGKREGDVVVVHRPAGMVELTVVEVSW 157
>gi|171780266|ref|ZP_02921170.1| hypothetical protein STRINF_02054 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281614|gb|EDT47049.1| hypothetical protein STRINF_02054 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 160
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T ++++QEL + RP +++ I AR+YGDLSEN+EY AAK+ Q
Sbjct: 1 MAEKTYPMTLAEKEQLEQELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG++ +E I AE+ID ++ D +A G TV++ E + DK Y IVG AD+ SG
Sbjct: 61 EGQIQNIETKIRYAEIIDSDAVAKDEVAIGKTVTVQEVGTTDKDVYHIVGAAGADIFSGR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK+ GDI+++ +P G EI+ V
Sbjct: 121 ISNESPIAQALIGKKTGDIVTIESPAGSYDVEIISVE 157
>gi|323343448|ref|ZP_08083675.1| transcription elongation factor GreA [Prevotella oralis ATCC 33269]
gi|323095267|gb|EFZ37841.1| transcription elongation factor GreA [Prevotella oralis ATCC 33269]
Length = 155
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 56/151 (37%), Positives = 90/151 (59%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ ELR + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++
Sbjct: 3 YMSQEGYDKLVAELRQLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINR 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I A+++D S +S D + + V + + K +Y IV + EAD++ G +SI +P
Sbjct: 63 LKLTIAEAKIVDTSRLSTDAVQILSKVDMTNMTTKSKMSYTIVSESEADLKQGKISIKTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ K++GD + + P G I ++
Sbjct: 123 IAQGLLNKKVGDEVEIKIPRGVIRLRIDKIT 153
>gi|225619028|ref|YP_002720254.1| transcription elongation factor GreA [Brachyspira hyodysenteriae
WA1]
gi|225213847|gb|ACN82581.1| transcription elongation factor GreA [Brachyspira hyodysenteriae
WA1]
Length = 154
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 57/151 (37%), Positives = 95/151 (62%), Gaps = 1/151 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G+DK + +L + E + I+EAR GDL ENAEY AAKE Q L ++++
Sbjct: 4 PITKEGYDKAKSKLADLKAEFET-LPAIIAEAREKGDLKENAEYHAAKEKQGLLNAQISK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE+ + E+ID + + D + FG V + +K+ Y+IVG+ EAD+ ++I +P
Sbjct: 63 LESDLAGCEIIDPANLDKDTVTFGKRVKVKDKSRNAVFEYRIVGELEADMSKNEITIVTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+GK++GD++++ P G+K EIL++
Sbjct: 123 IAKGLLGKKIGDVVTIKVPAGDKVLEILEIS 153
>gi|157693131|ref|YP_001487593.1| transcription elongation factor GreA [Bacillus pumilus SAFR-032]
gi|189042234|sp|A8FFL6|GREA_BACP2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|157681889|gb|ABV63033.1| transcription elongation factor [Bacillus pumilus SAFR-032]
Length = 157
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 53/133 (39%), Positives = 88/133 (66%), Gaps = 1/133 (0%)
Query: 24 QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83
+R +++ I AR++GDLSEN+EY +AKE Q EGR+ L+N+I A++I+ +
Sbjct: 26 TVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRITTLDNMIRNAKIIE-DEGNS 84
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
+ ++ G TV+ VE G++++Y IVG EAD G +S SPIA++L+GK++ D ++V
Sbjct: 85 NIVSLGKTVTFVELPDGEEESYTIVGSAEADPFEGKISNDSPIAKSLLGKQVDDKVTVQT 144
Query: 144 PGGEKTYEILQVL 156
PGGE +I+++
Sbjct: 145 PGGEMFVQIVKIS 157
>gi|57238811|ref|YP_179947.1| transcription elongation factor greA [Ehrlichia ruminantium str.
Welgevonden]
gi|57160890|emb|CAH57795.1| transcription elongation factor GreA [Ehrlichia ruminantium str.
Welgevonden]
Length = 162
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 74/163 (45%), Positives = 115/163 (70%), Gaps = 6/163 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ P+T GF+K++ E + ERP+IIK+ISEAR GDLSENAEY AA+E Q L E
Sbjct: 1 MNERFPITKAGFEKLELE-LESLKYERPQIIKSISEARELGDLSENAEYHAARERQGLVE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVS--LVEKNSG--DKKNYQIVGDQEADVQ 116
++ ELE+ +RAEVID++ +SGD + FGATV+ + ++ +G D+ YQIVG+ E+D+
Sbjct: 60 SKIMELESKKSRAEVIDVANLSGDTVMFGATVTMSIYDEQTGSTDEVIYQIVGEYESDIS 119
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
++SI SP+ +L+GK+ GD++ V P G+ Y+I+++ +I
Sbjct: 120 KRMISIKSPLVISLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 162
>gi|114565687|ref|YP_752841.1| GreA/GreB family elongation factor [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|122319142|sp|Q0B0N4|GREA_SYNWW RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|114336622|gb|ABI67470.1| GreA/GreB family elongation factor [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 159
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 94/158 (59%), Gaps = 2/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ + +T +G +K++ EL + +R + + I +A A+GD++EN+EY+ AK Q
Sbjct: 1 MAEEKEVVLTKEGLEKLENELEHLKSVKREEVAERIKQAIAFGDITENSEYEDAKNEQAF 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ LE + +A +++ + D ++ G+ ++L E SG + +V E+ ++ G
Sbjct: 61 IEGRIISLEKTLKKARLMEDEDIRTDVVSLGSRITLKEMKSGREVTVTLVSSVESKLKDG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +A++GK++ +SV AP G Y+I++V
Sbjct: 121 KISDESPVGKAIMGKKVKSTVSVEAPAGTIKYKIIKVE 158
>gi|300214037|gb|ADJ78453.1| Transcription elongation factor [Lactobacillus salivarius CECT
5713]
Length = 157
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 2 VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
+ KI +T G+ +I+ E+ + +RP IK + EARA GDLSENAEY AAK
Sbjct: 1 MPKIYFQKMTPNGYKQIEDEIEQLKL-DRPAKIKQLQEARALGDLSENAEYSAAKRDLRH 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQS 117
E R+ L + AE+I + + D + G TV++ + + D + YQIVG QE +V
Sbjct: 60 LESRLRYLNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDD 117
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI +A++ K++G +V AP G T +I+ +
Sbjct: 118 NKISFVSPIGKAIMHKKVGHTATVVAPTGSYTVKIISIS 156
>gi|293374263|ref|ZP_06620591.1| transcription elongation factor GreA [Turicibacter sanguinis PC909]
gi|325844834|ref|ZP_08168286.1| transcription elongation factor GreA [Turicibacter sp. HGF1]
gi|292647096|gb|EFF65078.1| transcription elongation factor GreA [Turicibacter sanguinis PC909]
gi|325489021|gb|EGC91409.1| transcription elongation factor GreA [Turicibacter sp. HGF1]
Length = 156
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 91/157 (57%), Gaps = 2/157 (1%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T +G K Q EL QQ I + EARA GDLSENAEY AA+E Q +
Sbjct: 1 MKEKQQHLTLEGIKKFQDELDHLQQVRMEEIKVKLQEARAQGDLSENAEYDAAREEQAMV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ EL+ I+ A VI+ S + + I G+TVS E+ + ++ Y+IVG EA+
Sbjct: 61 YERIQELQYILKNAVVIE-SDENSEVITIGSTVSYQEEETDEQMTYKIVGSAEANPFEAK 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+AL+GK +GD+ V+ P G T IL V
Sbjct: 120 ISNESPIAQALMGKRVGDVAMVSTPKGIVTVVILDVQ 156
>gi|227892405|ref|ZP_04010210.1| transcription elongation factor GreA [Lactobacillus salivarius ATCC
11741]
gi|227865812|gb|EEJ73233.1| transcription elongation factor GreA [Lactobacillus salivarius ATCC
11741]
Length = 157
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 57/159 (35%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 2 VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
+ KI +T G+ +I+ E+ + +RP IK + EARA GDLSENAEY AAK
Sbjct: 1 MPKIYFQKMTPNGYKQIEDEIEQLKL-DRPAKIKQLQEARALGDLSENAEYSAAKRDLRH 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQS 117
E R+ L + AE+I + + D + G TV++ + + D + YQIVG QE +V
Sbjct: 60 LESRLRYLNKQLQYAEII--TPKNADSVDIGTTVTIQFDDDENDLETYQIVGKQEVNVDD 117
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI +A++ K++G ++ AP G T +I+ +
Sbjct: 118 NKISFVSPIGKAIMHKKVGHTATIVAPAGSYTVKIISIS 156
>gi|319892663|ref|YP_004149538.1| Transcription elongation factor GreA [Staphylococcus
pseudintermedius HKU10-03]
gi|317162359|gb|ADV05902.1| Transcription elongation factor GreA [Staphylococcus
pseudintermedius HKU10-03]
gi|323464299|gb|ADX76452.1| transcription elongation factor GreA [Staphylococcus
pseudintermedius ED99]
Length = 158
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 97/154 (62%), Gaps = 2/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +G++K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 5 KQYPMTQEGYEKLEKELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E ++ A +I+ T + G TV+ VE D+++YQIVG E+D +G +S
Sbjct: 65 IQRIETMLRHALIIE-DTGDNHVVQIGKTVTFVELPGNDEESYQIVGSAESDAFNGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQV 155
SP+A+ALIGK++ D + V P GGE +I+ +
Sbjct: 124 ESPMAQALIGKQVDDEVRVPLPNGGEMNVKIVDI 157
>gi|227511608|ref|ZP_03941657.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC
11577]
gi|227085102|gb|EEI20414.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC
11577]
Length = 155
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+ KI+ E+ + +RP IK++++ARA GDLSENAEY AAK E R+
Sbjct: 7 KITKAGYQKIKDEINQLEN-DRPIKIKSLADARALGDLSENAEYSAAKRDLRHLESRLRF 65
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + +++ + D + G V+ + + YQIVG E D+ +G +SI+SP
Sbjct: 66 LRKELQYSKI--YTPSDNDNVEVGKYVTFEFLDDKSTETYQIVGTPEVDIDNGKISIASP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
I AL+ G+I+++ AP +I ++
Sbjct: 124 IGAALLNHHTGEIVTIQAPNLTYQVKIKEIK 154
>gi|329666577|gb|AEB92525.1| transcription elongation factor GreA [Lactobacillus johnsonii DPC
6026]
Length = 153
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK +
Sbjct: 1 MVYYQKMTPEGYQEIKDEIARLKK-DRPRRIKILQEARSMGDLSENSEYTTAKMELGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L+ + +E+I I G+ V+L+ + + Y+IVG EAD+ G +
Sbjct: 60 SRLRYLDKQLRYSEII--QKDESGTIDLGSNVTLLFDGDDEAEKYRIVGRMEADLAKGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+ ++ G ++V AP G +I+ V
Sbjct: 118 SFDSPLGQALMKQKAGATVTVEAPAGSYDVKIIAV 152
>gi|315925853|ref|ZP_07922059.1| transcription elongation factor GreA [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315620817|gb|EFV00792.1| transcription elongation factor GreA [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 165
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 4/155 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +++ VT +G +K++ EL + R +I+ + AR YGDLSEN+EY AK Q+ E
Sbjct: 13 MSEEMIVTQEGLEKMKAELEQLKTVTRYEVIEKLRTARGYGDLSENSEYDEAKNEQSFVE 72
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ ELE+ I +V++ + D + G+ V + +G YQIVG EA+++ G +
Sbjct: 73 GRIKELEHQIHHVKVVEE--VQTDVVGIGSYVKVA--TAGKNLEYQIVGSAEANIKEGKL 128
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S +SP+ L+G + GD++ + P G TYEIL +
Sbjct: 129 SNASPVGEGLMGCQAGDVVEIEVPRGVVTYEILDI 163
>gi|297626874|ref|YP_003688637.1| Transcription elongation factor GreA [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
gi|296922639|emb|CBL57216.1| Transcription elongation factor GreA [Propionibacterium
freudenreichii subsp. shermanii CIRM-BIA1]
Length = 167
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 55/164 (33%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M DK I +T + K+Q+EL + + E R I K I A+A GDLSEN Y AA+E Q
Sbjct: 1 MSDKQTIWMTQDAYTKLQEELDYLKGEGRSLIAKKIGAAKAEGDLSENGGYHAAREEQGQ 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA----- 113
E R+ +LE ++ AEV + + D + G+TV++ D + ++G +E
Sbjct: 61 QELRIRQLEQMLQHAEVGEP-QGAPDEVTAGSTVTVAYDGDPDDTDVFLLGSREMMGVDK 119
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
V + + S SP+ A++G+ GD + AP G E + +I++V
Sbjct: 120 SVDTQVFSPQSPLGAAVLGRSAGDTVEYQAPNGREVSVKIMKVE 163
>gi|296125308|ref|YP_003632560.1| transcription elongation factor GreA [Brachyspira murdochii DSM
12563]
gi|296017124|gb|ADG70361.1| transcription elongation factor GreA [Brachyspira murdochii DSM
12563]
Length = 154
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 57/150 (38%), Positives = 95/150 (63%), Gaps = 1/150 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T +G+DK++ +L + E + I+EAR GDL ENAEY AAKE Q L ++++
Sbjct: 4 PITKEGYDKVKAKLAELKAEFET-LPAIIAEAREKGDLKENAEYHAAKEKQGLLNAQISK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + E+ID S++ + + FG V + +KN Y+IVG+ EAD+ ++I +P
Sbjct: 63 LEGDLAGCEIIDPSSLDKNTVTFGKRVKVKDKNRNAVFEYRIVGELEADMSKNEITIVTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
IA+ L+ K++GD++++ P G+K EIL++
Sbjct: 123 IAKGLLAKKVGDVVTIKVPAGDKVLEILEI 152
>gi|227486472|ref|ZP_03916788.1| transcription elongation factor [Anaerococcus lactolyticus ATCC
51172]
gi|227235653|gb|EEI85668.1| transcription elongation factor [Anaerococcus lactolyticus ATCC
51172]
Length = 157
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 91/158 (57%), Gaps = 3/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M +K + +T + +K++ EL + + ++RP + + I AR++GDLSENA+Y AK Q
Sbjct: 1 MTEKKEVILTKEKLEKLEDELEYLKTKKRPEMAEKIKIARSFGDLSENADYDEAKNEQGE 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ ++E++I A+ I++ S D + G TV L ++ + Y+IVG E++ G
Sbjct: 61 VESRIMKIEDMIRNAKTIEVDENS-DTVGVGNTVCLYDEEFEEDVEYKIVGTAESNPLEG 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ A+IG ++ D + V P G+ + I +
Sbjct: 120 YISNESPVGEAIIGHKINDRVEVETPNGKMYFVIKNIK 157
>gi|322386974|ref|ZP_08060598.1| transcription elongation factor GreA [Streptococcus cristatus ATCC
51100]
gi|321269256|gb|EFX52192.1| transcription elongation factor GreA [Streptococcus cristatus ATCC
51100]
Length = 187
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +K++QEL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 28 MAEKTYPMTLVEKEKLEQELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 87
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I A ++D +++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 88 EGQISSLETKIRYAVIVDSDSVAKDEVAIGKTVTIQEVGETEEEVYIIVGSAGADAFAGK 147
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GDI +V P G +IL+V
Sbjct: 148 VSNESPIGQALIGKKTGDIATVETPVGSYDVKILKVE 184
>gi|319946449|ref|ZP_08020686.1| transcription elongation factor GreA [Streptococcus australis ATCC
700641]
gi|319747417|gb|EFV99673.1| transcription elongation factor GreA [Streptococcus australis ATCC
700641]
Length = 160
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T K++ EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLAEKQKLELELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE++D ++ D +A G TV++ E ++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVDSDAVAVDEVAIGKTVTVQEIGEDEEDVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI ALIGK+ GD +++ P G +IL V
Sbjct: 121 ISNESPIGHALIGKKTGDTVTIETPAGSYQVKILNVE 157
>gi|210618382|ref|ZP_03291947.1| hypothetical protein CLONEX_04180 [Clostridium nexile DSM 1787]
gi|210148938|gb|EEA79947.1| hypothetical protein CLONEX_04180 [Clostridium nexile DSM 1787]
Length = 144
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 58/144 (40%), Positives = 84/144 (58%), Gaps = 1/144 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T G +++EL + R + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MAEKKTLLTYAGLKALEEELENLKVVRRKEVAVKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ E+E I+ AEV+ + D+I G TVSL + ++ Y+IVG EA+ +G
Sbjct: 61 EARIEEIEKILKNAEVVVEDEVDFDKINVGCTVSLYDVEFEEEVEYKIVGSTEANSLAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNA 143
+S SP+ +ALIGK++GD + V A
Sbjct: 121 ISNESPLGKALIGKKVGDKVEVEA 144
>gi|116628860|ref|YP_814032.1| transcription elongation factor GreA [Lactobacillus gasseri ATCC
33323]
gi|238852826|ref|ZP_04643231.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4]
gi|282852524|ref|ZP_06261866.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus gasseri 224-1]
gi|311111317|ref|ZP_07712714.1| transcription elongation factor GreA 1 (Transcript cleavage factor
greA 1) [Lactobacillus gasseri MV-22]
gi|116094442|gb|ABJ59594.1| transcription elongation factor GreA [Lactobacillus gasseri ATCC
33323]
gi|238834520|gb|EEQ26752.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4]
gi|282556266|gb|EFB61886.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus gasseri 224-1]
gi|311066471|gb|EFQ46811.1| transcription elongation factor GreA 1 (Transcript cleavage factor
greA 1) [Lactobacillus gasseri MV-22]
Length = 153
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK +
Sbjct: 1 MVYYQKMTPEGYQEIKDEIARLKK-DRPRRIKILQEARSMGDLSENSEYTTAKMELGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L+ + +E+I I G+ V L+ + D + Y+IVG EAD+ G +
Sbjct: 60 SRLRYLDKQLRYSEII--QKDESGTIDLGSNVKLLFEGDDDAEEYRIVGRMEADLAKGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+ ++ G ++V AP G +I+ V
Sbjct: 118 SFDSPLGQALMKQKAGATVTVQAPAGSYDVKIIAV 152
>gi|329117237|ref|ZP_08245954.1| transcription elongation factor GreA [Streptococcus parauberis NCFD
2020]
gi|326907642|gb|EGE54556.1| transcription elongation factor GreA [Streptococcus parauberis NCFD
2020]
Length = 160
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 66/156 (42%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T D+++ EL + RP +++ I AR+YGDLSEN+EY AAK+ Q
Sbjct: 1 MAEKTYPMTQGEKDQLELELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+I+ ++ D +A G TV + E + DK Y IVG AD+ SG
Sbjct: 61 EGQISTLETKIRFAEIINSDDVAKDEVAIGKTVVVKEVGTNDKDTYHIVGAAGADIFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA ALIGK+ GDI+ + P EI+ V
Sbjct: 121 ISNESPIAHALIGKKKGDIVKIETPAATYDVEIISV 156
>gi|309805958|ref|ZP_07699985.1| transcription elongation factor GreA [Lactobacillus iners LactinV
03V1-b]
gi|309808528|ref|ZP_07702427.1| transcription elongation factor GreA [Lactobacillus iners LactinV
01V1-a]
gi|312871258|ref|ZP_07731356.1| transcription elongation factor GreA [Lactobacillus iners LEAF
3008A-a]
gi|312872694|ref|ZP_07732759.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2062A-h1]
gi|325912492|ref|ZP_08174882.1| transcription elongation factor GreA [Lactobacillus iners UPII
60-B]
gi|308167640|gb|EFO69792.1| transcription elongation factor GreA [Lactobacillus iners LactinV
03V1-b]
gi|308168356|gb|EFO70475.1| transcription elongation factor GreA [Lactobacillus iners LactinV
01V1-a]
gi|311091736|gb|EFQ50115.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2062A-h1]
gi|311093272|gb|EFQ51618.1| transcription elongation factor GreA [Lactobacillus iners LEAF
3008A-a]
gi|325478165|gb|EGC81287.1| transcription elongation factor GreA [Lactobacillus iners UPII
60-B]
Length = 153
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ KI+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK +
Sbjct: 1 MVYFQKMTPEGYKKIETEIAELKK-DRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + A+++ + + G+ V + ++ + + Y IVG EADV +
Sbjct: 60 SRLRFLNKQLQYAQIV--QKNNDGVVDLGSQVEIQFEDEEEIEPYTIVGTLEADVIDNKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ AL+ K+ GD++ VNAP G I+ V
Sbjct: 118 SFDSPLGAALMHKKAGDLVKVNAPAGSYQVRIISVK 153
>gi|167768162|ref|ZP_02440215.1| hypothetical protein CLOSS21_02718 [Clostridium sp. SS2/1]
gi|317499617|ref|ZP_07957879.1| transcription elongation factor GreA [Lachnospiraceae bacterium
5_1_63FAA]
gi|167709686|gb|EDS20265.1| hypothetical protein CLOSS21_02718 [Clostridium sp. SS2/1]
gi|291560188|emb|CBL38988.1| transcription elongation factor GreA [butyrate-producing bacterium
SSC/2]
gi|316893092|gb|EFV15312.1| transcription elongation factor GreA [Lachnospiraceae bacterium
5_1_63FAA]
Length = 159
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T G ++ EL+ + R I + I EAR GDLSENAEY AAK+ Q E
Sbjct: 4 AKKNILTPDGLKALEDELQELKVVRRKEIAQKIKEAREQGDLSENAEYDAAKDEQRDMEA 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+E I+ A VID I+ G V L + G + Y IVG EAD+ +S
Sbjct: 64 RIEEIEKILKNAVVIDE-KFEKGVISLGCHVLLEDITLGKEVTYHIVGSTEADILQNKIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+PI RAL+GK++GD++SV + ++ V
Sbjct: 123 NEAPIGRALLGKKIGDVVSVEGINQVNDFRVIDVQ 157
>gi|311743142|ref|ZP_07716950.1| transcription elongation factor GreA [Aeromicrobium marinum DSM
15272]
gi|311313822|gb|EFQ83731.1| transcription elongation factor GreA [Aeromicrobium marinum DSM
15272]
Length = 175
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 6/158 (3%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
D I VT + +D+++ EL + E R I I+ AR GDL EN Y AA+E Q E
Sbjct: 15 TDTIWVTQEAYDRLRSELDHLRGEVRSDITSKIAAARDEGDLKENGGYHAAREEQGKTEA 74
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ----EADVQS 117
R+ +LE+++ RAEV D G + G V++ D +++ + + ++ V
Sbjct: 75 RIRQLEDMLRRAEVGDKPADDG-LVEAGMKVTIRFAGDDDTESFLLGSRELLSLDSSVDL 133
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
+ S +SP+ A++GK+ GD + P G T E+++
Sbjct: 134 DVYSPTSPLGAAILGKKAGDTATYETPNGRSITVEVVE 171
>gi|154484003|ref|ZP_02026451.1| hypothetical protein EUBVEN_01711 [Eubacterium ventriosum ATCC
27560]
gi|149735045|gb|EDM50931.1| hypothetical protein EUBVEN_01711 [Eubacterium ventriosum ATCC
27560]
Length = 166
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 81/155 (52%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T G +++ EL + +R + + I EAR GDLSENAEY AAK+ Q E
Sbjct: 9 AKKNILTYAGLQELEAELEDLKVNKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEA 68
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ++E I+ EV+ S + +I G + + + + + IVG + + SG +S
Sbjct: 69 RIEDIEKILKNVEVVAESDIDDTKINVGCHIIIHDFEYDEDLEFSIVGSTQTNSLSGKIS 128
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ ALIG E+GDI+ V Y++L +
Sbjct: 129 NESPLGHALIGHEVGDIVEVEMGDTVSKYKVLDIK 163
>gi|188590574|ref|YP_001920968.1| transcription elongation factor GreA [Clostridium botulinum E3 str.
Alaska E43]
gi|188500855|gb|ACD53991.1| transcription elongation factor GreA [Clostridium botulinum E3 str.
Alaska E43]
Length = 155
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 82/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+Q+EL +R +R I K A A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENMKKLQEELEYRLTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+I+ A VID + + + + + D+ +V + D ++ L+SI S +
Sbjct: 65 MTMISTATVIDDTEIDKSSLGINSKARIKFVEDDDEDVITLVTTMDLDPENMLISIESDL 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+AL+GK+ G+ + V APG + T +IL++L+
Sbjct: 125 GKALMGKKAGETVEVEAPGAKYTVKILEILY 155
>gi|22537752|ref|NP_688603.1| transcription elongation factor GreA [Streptococcus agalactiae
2603V/R]
gi|25011701|ref|NP_736096.1| transcription elongation factor GreA [Streptococcus agalactiae
NEM316]
gi|76787850|ref|YP_330230.1| transcription elongation factor GreA [Streptococcus agalactiae
A909]
gi|76798458|ref|ZP_00780696.1| Transcription elongation factor greA (Transcript cleavage
factorgreA) [Streptococcus agalactiae 18RS21]
gi|77405807|ref|ZP_00782891.1| transcription elongation factor GreA [Streptococcus agalactiae
H36B]
gi|77408492|ref|ZP_00785230.1| transcription elongation factor GreA [Streptococcus agalactiae
COH1]
gi|77411916|ref|ZP_00788247.1| transcription elongation factor GreA [Streptococcus agalactiae
CJB111]
gi|77414235|ref|ZP_00790397.1| transcription elongation factor GreA [Streptococcus agalactiae 515]
gi|81456125|sp|Q8E3U5|GREA_STRA3 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|81744339|sp|Q8DY80|GREA_STRA5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123601405|sp|Q3JZS3|GREA_STRA1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|22534643|gb|AAN00476.1|AE014265_5 transcription elongation factor GreA [Streptococcus agalactiae
2603V/R]
gi|24413241|emb|CAD47320.1| Unknown [Streptococcus agalactiae NEM316]
gi|76562907|gb|ABA45491.1| transcription elongation factor GreA [Streptococcus agalactiae
A909]
gi|76586192|gb|EAO62712.1| Transcription elongation factor greA (Transcript cleavage
factorgreA) [Streptococcus agalactiae 18RS21]
gi|77159724|gb|EAO70873.1| transcription elongation factor GreA [Streptococcus agalactiae 515]
gi|77162013|gb|EAO72993.1| transcription elongation factor GreA [Streptococcus agalactiae
CJB111]
gi|77172934|gb|EAO76065.1| transcription elongation factor GreA [Streptococcus agalactiae
COH1]
gi|77175594|gb|EAO78379.1| transcription elongation factor GreA [Streptococcus agalactiae
H36B]
gi|319745513|gb|EFV97815.1| transcription elongation factor GreA [Streptococcus agalactiae ATCC
13813]
Length = 160
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T D++++EL + RP +++ I AR+YGDLSEN+EY AAK+ Q
Sbjct: 1 MAEKTYPMTQVEKDQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG
Sbjct: 61 EGQIQILETKIRYAEIIDSDAVAKDEVAIGKTVLVQEVGTNDKDTYHIVGAAGADIFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA ALIGK+ GD+ ++ +P G EI+ V
Sbjct: 121 ISNESPIAHALIGKKTGDLATIESPAGSYQVEIISVE 157
>gi|42560844|ref|NP_975295.1| transcription elongation factor GreA [Mycoplasma mycoides subsp.
mycoides SC str. PG1]
gi|81400735|sp|Q6MTU9|GREA_MYCMS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|42492340|emb|CAE76937.1| transcription elongation factor [Mycoplasma mycoides subsp.
mycoides SC str. PG1]
gi|301321466|gb|ADK70109.1| putative transcription elongation factor GreA [Mycoplasma mycoides
subsp. mycoides SC str. Gladysdale]
Length = 157
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E
Sbjct: 1 MSKEIILTQEGLEELKAELKHLLKVVRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60
Query: 61 GRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ E+E +I RA+VID S S + G+TV V K +IVG EAD S L
Sbjct: 61 ARIKEVETLINRAKVIDDSKTHSTGEVKIGSTVQFVSSLDNKLKEIKIVGAIEADPFSNL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+A+IGK++ + + I +
Sbjct: 121 ISNESPIAKAIIGKKVNTTVEIKDISKPYKITIKSIK 157
>gi|300362488|ref|ZP_07058664.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03]
gi|300353479|gb|EFJ69351.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03]
Length = 153
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK +
Sbjct: 1 MVYYQKMTPEGYQEIKDEIARLKK-DRPRRIKILQEARSMGDLSENSEYTTAKMELGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L+ + +E+I I G+ V L+ + D + Y+IVG EAD+ G +
Sbjct: 60 SRLRYLDKQLRYSEIIQKDK--SGTIDLGSNVKLLFEGDDDAEEYRIVGRMEADLTKGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+ ++ G ++V AP G +I+ V
Sbjct: 118 SFDSPLGQALMKQKAGATVTVEAPAGSYDVKIIAV 152
>gi|288803422|ref|ZP_06408854.1| transcription elongation factor GreA [Prevotella melaninogenica
D18]
gi|302345970|ref|YP_003814323.1| transcription elongation factor GreA [Prevotella melaninogenica
ATCC 25845]
gi|288334032|gb|EFC72475.1| transcription elongation factor GreA [Prevotella melaninogenica
D18]
gi|302149498|gb|ADK95760.1| transcription elongation factor GreA [Prevotella melaninogenica
ATCC 25845]
Length = 156
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 94/151 (62%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AE
Sbjct: 3 YMSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAE 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + +A+++D+S +S D + +TV + + K Y IV + EA+++ +SI +P
Sbjct: 63 LKMTVAQAKIVDVSRLSTDAVQIMSTVEMTNVKTNAKMKYTIVSETEANLKQNKISIKTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ K++GD + + P G T I ++
Sbjct: 123 IAQGLLNKKVGDEVEITIPRGTITLRIDKIS 153
>gi|284046269|ref|YP_003396609.1| transcription elongation factor GreA [Conexibacter woesei DSM
14684]
gi|283950490|gb|ADB53234.1| transcription elongation factor GreA [Conexibacter woesei DSM
14684]
Length = 154
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 83/155 (53%), Gaps = 3/155 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D +T +G D ++ EL + R I I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MTDGYAITQEGLDALRAELEQLETVARREIAARIRTAREWGDLKENAEYHAAKEDQAHLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +L A V + S+ D +AFG+TV + + G Y +VG EA + G +
Sbjct: 61 TRILKLRERERNATVTEASS-DVDIVAFGSTVEV--ETGGKNARYTLVGAAEASARDGKL 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SI SP+ARALIG G+ + V P G + +++V
Sbjct: 118 SIESPVARALIGARAGEDVQVQTPSGARILRVVRV 152
>gi|296122734|ref|YP_003630512.1| transcription elongation factor GreA [Planctomyces limnophilus DSM
3776]
gi|296015074|gb|ADG68313.1| transcription elongation factor GreA [Planctomyces limnophilus DSM
3776]
Length = 160
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 56/157 (35%), Positives = 98/157 (62%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ P++ +G+DK+++E+R + ++ P+I +AI+EARA GDL ENAEY +E Q +
Sbjct: 1 MELQPISREGYDKLKEEIRKLEHDDMPKIAEAIAEARAEGDLKENAEYHGQREEQGRLQA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L++ + ++D ST+ +AFG V++ + GD + Y+ VG E D S ++
Sbjct: 61 RINSLKSKLASCYIVDKSTLPKGVVAFGTRVTVKNTDDGDIEKYEFVGPGEEDYMSDVMK 120
Query: 122 I--SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
I +SP+A AL+GK++ D +S+ P G YEI ++
Sbjct: 121 ILTTSPLASALLGKKVNDKVSIQVPRGTINYEITEIE 157
>gi|257784990|ref|YP_003180207.1| transcription elongation factor GreA [Atopobium parvulum DSM 20469]
gi|257473497|gb|ACV51616.1| transcription elongation factor GreA [Atopobium parvulum DSM 20469]
Length = 159
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+I +T +G K+ EL +R+ E+ I++ I EAR +GDLSEN+EY AAKE Q+ NE
Sbjct: 4 TKEIVLTPEGRQKLVDELAYREGEKHDEIVERIKEARGFGDLSENSEYDAAKEEQSHNES 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+ I++ A+V++ + +A G TV L + G Y IVG E + +S
Sbjct: 64 RINEIRQILSVAKVVEGGSKRKVTVAIGTTVELADAK-GKTTKYVIVGTTETNSLEHKIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
SP ALIG + GD + P G+ K Y I+ +
Sbjct: 123 NESPAGEALIGHKKGDEVEFTTPNGKVKKYTIISIT 158
>gi|88706726|ref|ZP_01104428.1| Transcription elongation factor greB [Congregibacter litoralis
KT71]
gi|88699047|gb|EAQ96164.1| Transcription elongation factor greB [Congregibacter litoralis
KT71]
Length = 185
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 86/152 (56%), Gaps = 1/152 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G +++ EL ++ERP + A+ +A GD SEN +Y K+ + R+ +
Sbjct: 15 ITAAGEARLRAELDRLWRQERPVVALAVQDAAKNGDRSENGDYIYGKKRLREIDSRVRFI 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +V+ RI FGATV + ++++ + +I+G E + G VSI +PI
Sbjct: 75 SKRLEVLQVVREPPTDRTRIFFGATVEVEDQHA-VSRTIRILGPDEFESSRGEVSIDAPI 133
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
ARAL+GK +GD +++ +PGG + E+L V ++
Sbjct: 134 ARALLGKSVGDCVNLESPGGLRELEVLAVSYL 165
>gi|284113334|ref|ZP_06386608.1| transcription elongation factor GreA [Candidatus Poribacteria sp.
WGA-A3]
gi|283829659|gb|EFC33987.1| transcription elongation factor GreA [Candidatus Poribacteria sp.
WGA-A3]
Length = 132
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 58/130 (44%), Positives = 90/130 (69%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P+ I+ I+EAR +GDL ENAE++AAKE Q + RM+E+E+ + A+VI+ T + +
Sbjct: 1 PQNIQDIAEAREHGDLRENAEFKAAKERQQFIDTRMSEIEHKLGDAQVIESGTGPSETVV 60
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
FGATV L++ S ++K Y +VG +EAD+++G +S+ SPI RALI +GD++ VN P G
Sbjct: 61 FGATVRLLDVESEEQKTYTLVGQEEADLKNGSISVQSPIGRALISHRVGDVVQVNRPAGM 120
Query: 148 KTYEILQVLW 157
YEI ++ +
Sbjct: 121 IEYEIQEIFF 130
>gi|18310245|ref|NP_562179.1| transcription elongation factor GreA [Clostridium perfringens str.
13]
gi|110801097|ref|YP_695914.1| transcription elongation factor GreA [Clostridium perfringens ATCC
13124]
gi|110802369|ref|YP_698592.1| transcription elongation factor GreA [Clostridium perfringens
SM101]
gi|168205506|ref|ZP_02631511.1| transcription elongation factor GreA [Clostridium perfringens E
str. JGS1987]
gi|168213038|ref|ZP_02638663.1| transcription elongation factor GreA [Clostridium perfringens CPE
str. F4969]
gi|168217085|ref|ZP_02642710.1| transcription elongation factor GreA [Clostridium perfringens NCTC
8239]
gi|169344009|ref|ZP_02865000.1| transcription elongation factor GreA [Clostridium perfringens C
str. JGS1495]
gi|182624203|ref|ZP_02951989.1| transcription elongation factor GreA [Clostridium perfringens D
str. JGS1721]
gi|18144924|dbj|BAB80969.1| transcription elongation factor [Clostridium perfringens str. 13]
gi|110675744|gb|ABG84731.1| transcription elongation factor GreA [Clostridium perfringens ATCC
13124]
gi|110682870|gb|ABG86240.1| transcription elongation factor GreA [Clostridium perfringens
SM101]
gi|169297917|gb|EDS80012.1| transcription elongation factor GreA [Clostridium perfringens C
str. JGS1495]
gi|170663031|gb|EDT15714.1| transcription elongation factor GreA [Clostridium perfringens E
str. JGS1987]
gi|170715452|gb|EDT27634.1| transcription elongation factor GreA [Clostridium perfringens CPE
str. F4969]
gi|177910617|gb|EDT72985.1| transcription elongation factor GreA [Clostridium perfringens D
str. JGS1721]
gi|182380772|gb|EDT78251.1| transcription elongation factor GreA [Clostridium perfringens NCTC
8239]
Length = 154
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 83/151 (54%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + K+++EL +R R +I K EA A+GD SENAEY+ A N+ R+
Sbjct: 4 YLTEENVRKLREELDYRMSVVRAKIAKEKLEAAAHGDRSENAEYKEACRNYRENDNRIQY 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +I+ A ++D + + + + D+ +V + D+++ +SI S
Sbjct: 64 LLTMISTAIIVDEESNDKSTLGLNSKARIKFVEDDDEDVVTLVTTMDLDLENMCISIESD 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +AL+GK++GD++ V APGG T E+L++L
Sbjct: 124 LGKALMGKKVGDVVEVEAPGGNYTVEVLEIL 154
>gi|224542870|ref|ZP_03683409.1| hypothetical protein CATMIT_02064 [Catenibacterium mitsuokai DSM
15897]
gi|224524200|gb|EEF93305.1| hypothetical protein CATMIT_02064 [Catenibacterium mitsuokai DSM
15897]
Length = 162
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 91/160 (56%), Gaps = 4/160 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M K+ ++ +GF+K++ E ERP +I+ I AR+ GDLSENA+Y AA++ Q E
Sbjct: 4 MDKKVQISREGFEKLKAERENLINVERPAVIEEIKLARSQGDLSENADYDAARDKQARIE 63
Query: 61 GRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVE--KNSGDKKNYQIVGDQEADVQS 117
R+ ELE ++ A +I + + GATV++++ + + + + I+G E D
Sbjct: 64 ERIKELEVMMQNAVIIGSDVKVDTHVVNLGATVTVLDLSEENPEPDTFTILGSTETDPLH 123
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
G +S SP+A+AL+ ++GD+++V EI+ + +
Sbjct: 124 GKISNESPLAKALMTHKIGDVVTVGV-AKPYDVEIVDIKY 162
>gi|270158321|ref|ZP_06186978.1| transcription elongation factor GreB [Legionella longbeachae
D-4968]
gi|289163433|ref|YP_003453571.1| transcription elongation factor [Legionella longbeachae NSW150]
gi|269990346|gb|EEZ96600.1| transcription elongation factor GreB [Legionella longbeachae
D-4968]
gi|288856606|emb|CBJ10413.1| transcription elongation factor [Legionella longbeachae NSW150]
Length = 181
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 2/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T GF +Q ELR ERP I+K +S A + GD SEN +Y K+ + R+
Sbjct: 26 KNYMTPNGFAMLQAELRNLISNERPEIVKVVSWAASNGDRSENGDYIYGKKRLREIDRRI 85
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A+++D + ++ FGATV + +G+ +IVG EAD+ G +S
Sbjct: 86 RYLTKRLESAQIVDPKLQVGLTQVFFGATVQYIN-ENGESHCVKIVGLDEADINEGKISW 144
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+A+ L+ ++GD ++ E + + +I
Sbjct: 145 VSPLAKTLLKAKVGDHRTLRVGDKECHLTVTHISYI 180
>gi|227508629|ref|ZP_03938678.1| transcription elongation factor GreA [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227191961|gb|EEI72028.1| transcription elongation factor GreA [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 155
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+ KI+ E+ + +RP IK++++ARA GDLSENAEY AAK E R+
Sbjct: 7 KITKAGYQKIKDEINQLEN-DRPIKIKSLADARALGDLSENAEYSAAKRDLRHLESRLRF 65
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + +++ + D + G V+ + + YQIVG E D+ +G +SI+SP
Sbjct: 66 LRKELQYSKI--YTPSDNDNVEVGKYVTFEFLDDKSTETYQIVGTPEVDIDNGKISIASP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
I AL+ G+I+++ AP +I ++
Sbjct: 124 ICAALLNHHTGEIVTIQAPNLTYQVKIKEIK 154
>gi|226951512|ref|ZP_03821976.1| transcription elongation factor GreB [Acinetobacter sp. ATCC 27244]
gi|226837748|gb|EEH70131.1| transcription elongation factor GreB [Acinetobacter sp. ATCC 27244]
Length = 158
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G D + EL+ +ERP I K ++ A + GD SENA+YQ K+L +
Sbjct: 1 MKSNLITRTGHDLLVAELKRLWHDERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120
R+ L + +++D ++ FGA V + +G++K +IVG E D +
Sbjct: 61 RVRYLGKRLEELKIVDYVPEQEGKVYFGAWVEIEN-EAGEQKILRIVGVDEIYDHHPQHI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ D + V+ P G+K + I + +
Sbjct: 120 SIESPMARALLTKQVDDEVEVHTPLGKKVWYINSIRY 156
>gi|322421115|ref|YP_004200338.1| GreA/GreB family elongation factor [Geobacter sp. M18]
gi|320127502|gb|ADW15062.1| GreA/GreB family elongation factor [Geobacter sp. M18]
Length = 157
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 89/150 (59%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++++G ++Q+ + ++ERPR++K +++A A GD SENAEY +K+ + + L
Sbjct: 5 ISAEGRKRLQERYDFLWEKERPRMVKNMADAAAEGDRSENAEYIYSKKRLREIDRELRHL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ ++ ++FG V+ ++ G ++ YQ+VG E DV G +S+ SP+
Sbjct: 65 GDRLKVLKVV-YPPLNPASVSFGCWVTYEDEEGG-ERCYQLVGPDEFDVSLGKISVDSPV 122
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+AL+GK++ D +++ P G+ IL V
Sbjct: 123 GKALLGKKVDDEVTIRRPAGDLAVTILAVT 152
>gi|332665125|ref|YP_004447913.1| transcription elongation factor GreA [Haliscomenobacter hydrossis
DSM 1100]
gi|332333939|gb|AEE51040.1| transcription elongation factor GreA [Haliscomenobacter hydrossis
DSM 1100]
Length = 156
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 93/155 (60%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T +GF+++ EL + R +AI+EAR GDLSENAEY AAKE Q L E
Sbjct: 1 MTINYLTKEGFERLTGELDDMKTRGRAEAARAIAEAREKGDLSENAEYDAAKEAQGLLEL 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +LE + A V+D S + ++ A V+++ + K YQ+V + EAD+++ VS
Sbjct: 61 RINDLEKQLANARVLDASEVDTSKVTVLAKVTIMNTKNKAKITYQLVSESEADLKAKKVS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+SSP+ + L+GK +G+ +V P G+ ++I+ +
Sbjct: 121 VSSPMGQGLLGKTIGETATVRTPNGDMQFKIVDIS 155
>gi|94984775|ref|YP_604139.1| transcription elongation factor GreA [Deinococcus geothermalis DSM
11300]
gi|94555056|gb|ABF44970.1| transcription elongation factor GreA [Deinococcus geothermalis DSM
11300]
Length = 156
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 94/154 (61%), Gaps = 3/154 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+IP+T +G+DK+++ L + + R +I + + A A GDL E+A Y A+ Q+ NE R+
Sbjct: 5 RIPMTKRGYDKLRETLEYLKTTRREQISEYMGSAIADGDLRESAAYDEARMQQSENEARI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE+ + RA++I+ G GA V + ++ G+++ +++VG E DV G +S +
Sbjct: 65 LELEDQLERAQIIEEDASGG--AGLGAKVKVRDEK-GNERQFELVGTYEVDVLKGKISDA 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPI +AL GK G I++V P G +E+L+V +
Sbjct: 122 SPIGQALSGKRPGQIVTVQLPKGSAKFEVLEVTY 155
>gi|313665187|ref|YP_004047058.1| transcription elongation factor GreA [Mycoplasma leachii PG50]
gi|312949485|gb|ADR24081.1| putative transcription elongation factor GreA [Mycoplasma leachii
PG50]
Length = 157
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E
Sbjct: 1 MSKEIILTQEGLEELKAELKNLLEVTRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60
Query: 61 GRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ E+E +I RA+VID S S + G+TV + K +IVG EAD S L
Sbjct: 61 ARIKEVETLINRAKVIDDSKTHSTGEVKIGSTVEFLSSLDHKTKEIKIVGAIEADPFSRL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+A++GK++GD + + I +
Sbjct: 121 ISNESPIAKAILGKKIGDTVEIKDILKPYKITIKSIK 157
>gi|89901919|ref|YP_524390.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118]
gi|89346656|gb|ABD70859.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118]
Length = 187
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G+ +++ EL +RP++++A+ A + GD SEN +Y K+ + R+
Sbjct: 29 KNYITPQGYARLRGELLDLIDNQRPQVVEAVYWAASNGDRSENGDYIYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + A+V D + G ++I FGA V+ VE +G ++ I+G EAD G VS
Sbjct: 89 RFLTQRLEIAQVTDPALHHGSEQIFFGAHVTYVEA-AGTARSVTILGIDEADSALGQVSW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIAR L+ +GD + + P G E++ V +
Sbjct: 148 VSPIARTLLQARVGDELQLLTPVGRVEIEVIGVDY 182
>gi|83319925|ref|YP_424238.1| transcription elongation factor GreA [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
gi|123740058|sp|Q2SSM5|GREA_MYCCT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|83283811|gb|ABC01743.1| transcription elongation factor GreA [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
Length = 157
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 90/157 (57%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +T +G ++++ EL+ + RP++I+ + EAR GDLSENA+Y AA+ Q E
Sbjct: 1 MSKEIILTQEGLEELKAELKNLLEVTRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60
Query: 61 GRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ E+E +I RA+VID S S + G+TV + K +IVG EAD S L
Sbjct: 61 ARIKEVETLINRAKVIDNSKTHSTGEVKIGSTVEFLSSLDHKTKEIKIVGAIEADPFSRL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+A++GK++GD + + I +
Sbjct: 121 ISNESPIAKAILGKKIGDTVEIKDILKPYKITIKSIK 157
>gi|288906006|ref|YP_003431228.1| transcription elongation factor [Streptococcus gallolyticus UCN34]
gi|306832025|ref|ZP_07465180.1| transcription elongation factor GreA [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|306834163|ref|ZP_07467283.1| transcription elongation factor GreA [Streptococcus bovis ATCC
700338]
gi|325978973|ref|YP_004288689.1| transcription elongation factor greA [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|288732732|emb|CBI14306.1| transcription elongation factor [Streptococcus gallolyticus UCN34]
gi|304423736|gb|EFM26882.1| transcription elongation factor GreA [Streptococcus bovis ATCC
700338]
gi|304425951|gb|EFM29068.1| transcription elongation factor GreA [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325178901|emb|CBZ48945.1| Transcription elongation factor greA [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
Length = 160
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 67/157 (42%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T ++++QEL + RP +++ I AR+YGDLSEN+EY AAK+ Q
Sbjct: 1 MAEKTYPMTLAEKEQLEQELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG++ LE I AE+ID ++ D +A G TV++ E + DK Y IVG AD+ SG
Sbjct: 61 EGQIQILETKIRYAEIIDSDAVAKDEVAIGKTVTVEEVGTTDKDVYHIVGAAGADIFSGR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK+ GDI+++ +P G +I+ V
Sbjct: 121 ISNESPIAQALIGKKTGDIVTIESPAGSYDVKIVSVE 157
>gi|169350015|ref|ZP_02866953.1| hypothetical protein CLOSPI_00755 [Clostridium spiroforme DSM 1552]
gi|169293228|gb|EDS75361.1| hypothetical protein CLOSPI_00755 [Clostridium spiroforme DSM 1552]
Length = 161
Score = 134 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 51/157 (32%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K+ +T G +K++QE ERP++I+ + AR+ GDLSENA+Y AA+E Q E R
Sbjct: 4 EKVLLTQSGLEKLEQERDRLINVERPKVIEELQLARSQGDLSENADYDAAREKQAHLESR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVE--KNSGDKKNYQIVGDQEADVQSGLV 120
+ E++ ++ E+I M + G TV++++ + + ++Y+IVG E D +G +
Sbjct: 64 IKEIDYMLQNVEIISEDQMDLKVVKPGTTVTILDLSETDAEPESYKIVGFTETDPLNGKI 123
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S SP+A+A+IG ++ +I++V +IL + +
Sbjct: 124 SNESPLAKAVIGHDVNEIVTVGV-AEPYDVKILNIEF 159
>gi|302874691|ref|YP_003843324.1| transcription elongation factor GreA [Clostridium cellulovorans
743B]
gi|307690697|ref|ZP_07633143.1| transcription elongation factor GreA [Clostridium cellulovorans
743B]
gi|302577548|gb|ADL51560.1| transcription elongation factor GreA [Clostridium cellulovorans
743B]
Length = 154
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 91/155 (58%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KI +T G K++ EL + + +R I +A+ ARA GDLSENA+Y AAK+ Q++ E
Sbjct: 1 MSKIQLTEAGKQKLEDELNYLKSVKRVEIKEALKVARAQGDLSENADYSAAKDDQSITET 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AE+E+I+ AE+I+ ST + + + + + + +V EAD ++ +S
Sbjct: 61 RIAEIESILKYAEIIEAST-DANVFDVNKSAKVKFYDFDEIEVVTLVSSVEADAKNMKIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
I SP+ AL E+G +SV +P G E++++L
Sbjct: 120 IDSPLGMALHRLEVGKKVSVTSPDGSYDVEVIEIL 154
>gi|319943395|ref|ZP_08017677.1| transcription elongation factor GreB [Lautropia mirabilis ATCC
51599]
gi|319743210|gb|EFV95615.1| transcription elongation factor GreB [Lautropia mirabilis ATCC
51599]
Length = 186
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 83/155 (53%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ ++ EL ERP +++ +S A + GD SEN +Y K+ + R+
Sbjct: 29 KNYITRAGYQALRDELSHLLDVERPEVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRI 88
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I RAEV++ S G D++ FGATV+ E + G ++ QIVG E D +G +S
Sbjct: 89 RFLIRRIDRAEVVEPSAHHGNDQVFFGATVTYSEPD-GTERRVQIVGVDETDPLAGKISW 147
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARALI GD +S+ P G I V +
Sbjct: 148 VSPVARALIKAREGDEVSLMTPQGRMELLIESVEY 182
>gi|42518266|ref|NP_964196.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC
533]
gi|41582550|gb|AAS08162.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC
533]
Length = 153
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 88/155 (56%), Gaps = 3/155 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK +
Sbjct: 1 MVYYQKMTPEGYQEIKDEIARLKK-DRPRRIKILQEARSMGDLSENSEYTTAKMELGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L+ + +E+I I G+ V+L+ + + + Y+IVG EAD+ G +
Sbjct: 60 SRLRYLDKQLRYSEII--QKDESGTIDLGSNVTLLFEGDDEAEEYRIVGRMEADLAKGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+ ++ G ++V AP G +I+ V
Sbjct: 118 SFDSPLGQALMKQKAGATVTVEAPAGSYDVKIIDV 152
>gi|227523817|ref|ZP_03953866.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC
8290]
gi|227089018|gb|EEI24330.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC
8290]
Length = 155
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+ KI+ E+ + +RP IK++++ARA GDLSENAEY AAK E R+
Sbjct: 7 KITKAGYQKIKDEINQLEN-DRPIKIKSLADARALGDLSENAEYSAAKRDLRHLESRLRF 65
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + +++ + D + G V+ + + YQIVG E D+ G +SI+SP
Sbjct: 66 LRKELQYSKI--YTPSDNDNVEVGKYVTFEFLDDKSTETYQIVGTPEVDIDDGKISIASP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
I AL+ G+I+++ AP +I ++
Sbjct: 124 IGAALLNHHTGEIVTIQAPNLTYQVKIKEIK 154
>gi|306821055|ref|ZP_07454673.1| transcription elongation factor GreA [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304550891|gb|EFM38864.1| transcription elongation factor GreA [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 165
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 87/157 (55%), Gaps = 3/157 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ I +T +G++ I++EL + R + + EAR++GDLSENAEY AK Q E R
Sbjct: 7 NDILLTKEGYENIEKELDELKSVRRKEVSDKLKEARSFGDLSENAEYDEAKNEQAQLEER 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSL---VEKNSGDKKNYQIVGDQEADVQSGL 119
+A+LEN++ +A +I + + + + G V + ++++Y IVG E++ G
Sbjct: 67 IAKLENMLRKAVIISETDLKMNIVNLGTQVKVSIKYPDGEVEEEDYTIVGSAESNPAEGK 126
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI +ALIG + G I V P G +I+ +
Sbjct: 127 ISNDSPIGKALIGAKKGQKIDVQVPDGIAKIKIVSIE 163
>gi|300727402|ref|ZP_07060811.1| transcription elongation factor GreA [Prevotella bryantii B14]
gi|299775282|gb|EFI71881.1| transcription elongation factor GreA [Prevotella bryantii B14]
Length = 155
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 93/151 (61%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ EL++ + ERP+ AI+EA GDLSEN+EY AAKE Q E ++ +
Sbjct: 3 YMSQEGYDKLVAELKYLESVERPKASAAIAEAADKGDLSENSEYDAAKENQAHLEAKINQ 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ I++A+++D+S +S D + TV + + K Y IV + EAD++SG +SI +P
Sbjct: 63 IKMTISQAKIVDMSRLSADAVQIMTTVEMTNLGNNAKMKYTIVSESEADLKSGKISIKTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ K++GD + P G I ++
Sbjct: 123 IAQGLLNKKVGDTAEIKIPRGTIHLRIDKIS 153
>gi|253699374|ref|YP_003020563.1| GreA/GreB family elongation factor [Geobacter sp. M21]
gi|251774224|gb|ACT16805.1| GreA/GreB family elongation factor [Geobacter sp. M21]
Length = 158
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 90/150 (60%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++++G ++Q+ + + ERPR++K +++A A GD SENAEY +K+ + + L
Sbjct: 6 ISAEGRKRLQERYDFLWETERPRMVKNMADAAAEGDRSENAEYIYSKKRLREIDRELRHL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ ++ ++FG V+ ++ G+++ YQ+VG E DV +G +S+ SP+
Sbjct: 66 GDRLKVVKVV-YPPLNPSTVSFGCWVTYEDEE-GEERCYQLVGPDEFDVTAGKISVDSPV 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+AL+G+++ D I++ P G+ I+ +
Sbjct: 124 GKALLGRKVDDEITIKRPAGDLAVTIVAIS 153
>gi|322387442|ref|ZP_08061052.1| transcription elongation factor GreA [Streptococcus infantis ATCC
700779]
gi|321141971|gb|EFX37466.1| transcription elongation factor GreA [Streptococcus infantis ATCC
700779]
Length = 160
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MVEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ + +A G TV++ E +K+ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAKNEVAIGKTVTIQEVGEDEKEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD++++ P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKKGDVVTIETPAGSYDVKILKVE 157
>gi|309809127|ref|ZP_07703000.1| transcription elongation factor GreA [Lactobacillus iners SPIN
2503V10-D]
gi|308170572|gb|EFO72592.1| transcription elongation factor GreA [Lactobacillus iners SPIN
2503V10-D]
Length = 153
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ KI+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK +
Sbjct: 1 MVYFQKMTPEGYKKIETEIAELKK-DRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + A+++ + I G+ V + ++ + + Y IVG EADV +
Sbjct: 60 SRLRFLNKQLQYAQIV--QKNNDGVIDLGSQVEIQFEDEEEIEPYTIVGTLEADVIDNKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ AL+ K+ GD++ VNAP G I+ V
Sbjct: 118 SFDSPLGAALMHKKAGDLVKVNAPAGSYQVRIISVK 153
>gi|294651152|ref|ZP_06728486.1| transcription elongation factor GreB [Acinetobacter haemolyticus
ATCC 19194]
gi|292822948|gb|EFF81817.1| transcription elongation factor GreB [Acinetobacter haemolyticus
ATCC 19194]
Length = 158
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T G D + EL+ +ERP I K ++ A + GD SENA+YQ K+L +
Sbjct: 1 MKSNLITRTGHDLLVAELKKLWHDERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120
R+ L + +++D ++ FGA V + +G++K +IVG E D +
Sbjct: 61 RVRYLGKRLEELKIVDYVPEQEGKVYFGAWVEIEN-EAGEQKILRIVGIDEIYDHHPQHI 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI SP+ARAL+ K++ D + V+ P G+K + I + +
Sbjct: 120 SIESPMARALLTKQVDDEVEVHTPLGKKVWYINSIRY 156
>gi|251779859|ref|ZP_04822779.1| transcription elongation factor GreA [Clostridium botulinum E1 str.
'BoNT E Beluga']
gi|243084174|gb|EES50064.1| transcription elongation factor GreA [Clostridium botulinum E1 str.
'BoNT E Beluga']
Length = 155
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 82/151 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+Q+EL +R +R I K A A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENMKKLQEELEYRLTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+I+ A VID + + + + + D+ +V + D ++ L+SI S +
Sbjct: 65 MTMISTATVIDDTEIDKSTLGINSKARIKFVEDDDEDVITLVTTMDLDPENMLISIESDL 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+AL+GK+ G+ + V APG + T +IL++L+
Sbjct: 125 GKALMGKKAGETVEVEAPGAKYTVQILEILY 155
>gi|193216587|ref|YP_001999829.1| transcription elongation factor [Mycoplasma arthritidis 158L3-1]
gi|259647648|sp|B3PM73|GREA_MYCA5 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|193001910|gb|ACF07125.1| transcription elongation factor [Mycoplasma arthritidis 158L3-1]
Length = 159
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI +T+ F + Q+ L++ Q+ RP++I+ I EAR GDLSENAEY AA++ Q E
Sbjct: 6 EKIYLTADSFKQYQERLQYLQEVLRPQVIEEIKEARNQGDLSENAEYDAARDKQATIENE 65
Query: 63 MAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ E+++I+ E+I + + G+ VS+V N+QIVG + D +G +S
Sbjct: 66 ITEIQHILDNYEIIKTQTNRQVSVVRIGSNVSVVSLKDDTVINFQIVGALDTDPFNGKIS 125
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+SP+A+A+IG++ G+++ V AP + +I+ V
Sbjct: 126 NTSPLAKAVIGRKAGEVVEVEAPN-KYQVKIVHV 158
>gi|331703265|ref|YP_004399952.1| transcription elongation factor [Mycoplasma mycoides subsp. capri
LC str. 95010]
gi|256384044|gb|ACU78614.1| transcription elongation factor GreA [Mycoplasma mycoides subsp.
capri str. GM12]
gi|256384876|gb|ACU79445.1| transcription elongation factor GreA [Mycoplasma mycoides subsp.
capri str. GM12]
gi|296455679|gb|ADH21914.1| transcription elongation factor GreA [synthetic Mycoplasma mycoides
JCVI-syn1.0]
gi|328801820|emb|CBW53973.1| Transcription elongation factor [Mycoplasma mycoides subsp. capri
LC str. 95010]
Length = 157
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +T +G ++++ EL++ + RP++I+ + EAR GDLSENA+Y AA+ Q E
Sbjct: 1 MSKEIILTQEGLEELKAELKYLLEVVRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60
Query: 61 GRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ E+E +I RA+VID S S + G+TV V K +IVG EAD S L
Sbjct: 61 ARIKEVETLINRAKVIDDSKTHSTGEVKIGSTVQFVSSLDNKLKEIKIVGAIEADPFSNL 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+A+IGK++ + + I +
Sbjct: 121 ISNESPIAKAIIGKKVNTTVEIKDISKPYKITIKSIK 157
>gi|162147888|ref|YP_001602349.1| transcription elongation factor greB [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786465|emb|CAP56047.1| putative transcription elongation factor greB [Gluconacetobacter
diazotrophicus PAl 5]
Length = 199
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT G ++ EL ++ERPRI+ +S A GD SEN +Y K+ + R+
Sbjct: 41 YVTPAGMAAMRGELNALLRDERPRIVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRF 100
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L I +A V+D + + DR+ FGATV+ V ++ IVG E+D+ +G VS++S
Sbjct: 101 LTRRIEKAIVVDPAAQTRRDRVFFGATVTYV-TEDDTERTVVIVGVDESDLAAGQVSLAS 159
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL+G +GD + + P G + EIL++ +
Sbjct: 160 PVARALLGGRVGDEVRLLTPAGAEMIEILRIAY 192
>gi|260893494|ref|YP_003239591.1| transcription elongation factor GreA [Ammonifex degensii KC4]
gi|260865635|gb|ACX52741.1| transcription elongation factor GreA [Ammonifex degensii KC4]
Length = 159
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K I +T +G ++++EL + R + + I +A A+GD+SENAEY+ AK Q
Sbjct: 1 MKEKEIVLTPEGLRRLEEELELLKSVRRREVAERIKQALAFGDISENAEYEDAKNEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE I+ A VID + + + G+TV L + G + Y IVG +EAD +
Sbjct: 61 EGRIITLEKILRHARVIDQEEIGTEEVTIGSTVRLKDLADGAEYEYTIVGSEEADPAAHR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ RAL+GK+ GD + V+ P G+ +++IL +
Sbjct: 121 ISYESPVGRALLGKKKGDTVDVDVPAGKLSFQILDI 156
>gi|15924600|ref|NP_372134.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus Mu50]
gi|15927190|ref|NP_374723.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus N315]
gi|21283289|ref|NP_646377.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MW2]
gi|49483855|ref|YP_041079.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49486443|ref|YP_043664.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57652001|ref|YP_186505.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus COL]
gi|82751210|ref|YP_416951.1| transcription elongation factor GreA [Staphylococcus aureus RF122]
gi|87161697|ref|YP_494262.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88195419|ref|YP_500223.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|148268091|ref|YP_001247034.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus JH9]
gi|150394159|ref|YP_001316834.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus JH1]
gi|151221723|ref|YP_001332545.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979928|ref|YP_001442187.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus Mu3]
gi|161509837|ref|YP_001575496.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221141120|ref|ZP_03565613.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253315240|ref|ZP_04838453.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253733139|ref|ZP_04867304.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus TCH130]
gi|255006395|ref|ZP_05144996.2| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425734|ref|ZP_05602158.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257428395|ref|ZP_05604793.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257431033|ref|ZP_05607412.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 68-397]
gi|257433719|ref|ZP_05610077.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus E1410]
gi|257436634|ref|ZP_05612678.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus M876]
gi|257793685|ref|ZP_05642664.1| transcription elongation factor greA [Staphylococcus aureus A9781]
gi|258411016|ref|ZP_05681296.1| transcription elongation factor GreA [Staphylococcus aureus A9763]
gi|258420182|ref|ZP_05683137.1| transcription elongation factor greA [Staphylococcus aureus A9719]
gi|258424036|ref|ZP_05686918.1| transcription elongation factor greA [Staphylococcus aureus A9635]
gi|258438184|ref|ZP_05689468.1| transcription elongation factor greA [Staphylococcus aureus A9299]
gi|258443647|ref|ZP_05691986.1| transcription elongation factor greA [Staphylococcus aureus A8115]
gi|258446854|ref|ZP_05695008.1| transcription elongation factor greA [Staphylococcus aureus A6300]
gi|258448768|ref|ZP_05696880.1| transcription elongation factor greA [Staphylococcus aureus A6224]
gi|258450563|ref|ZP_05698625.1| transcription elongation factor greA [Staphylococcus aureus A5948]
gi|258453587|ref|ZP_05701565.1| transcription elongation factor greA [Staphylococcus aureus A5937]
gi|262048605|ref|ZP_06021488.1| transcription elongation factor [Staphylococcus aureus D30]
gi|262051265|ref|ZP_06023489.1| transcription elongation factor [Staphylococcus aureus 930918-3]
gi|269203236|ref|YP_003282505.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus ED98]
gi|282893113|ref|ZP_06301347.1| transcription elongation factor greA [Staphylococcus aureus A8117]
gi|282904191|ref|ZP_06312079.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus C160]
gi|282906017|ref|ZP_06313872.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282908929|ref|ZP_06316747.1| transcription elongation factor GreB [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282911247|ref|ZP_06319049.1| transcription elongation factor GreB [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282914415|ref|ZP_06322201.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus M899]
gi|282916879|ref|ZP_06324637.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus D139]
gi|282919385|ref|ZP_06327120.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus C427]
gi|282920157|ref|ZP_06327882.1| transcription elongation factor greA [Staphylococcus aureus A9765]
gi|282924710|ref|ZP_06332378.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus C101]
gi|282928244|ref|ZP_06335849.1| transcription elongation factor greA [Staphylococcus aureus A10102]
gi|283770684|ref|ZP_06343576.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus H19]
gi|283958371|ref|ZP_06375822.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus A017934/97]
gi|284024667|ref|ZP_06379065.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus 132]
gi|293503490|ref|ZP_06667337.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 58-424]
gi|293510507|ref|ZP_06669213.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus M809]
gi|293531047|ref|ZP_06671729.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus M1015]
gi|294848639|ref|ZP_06789385.1| transcription elongation factor greA [Staphylococcus aureus A9754]
gi|295406732|ref|ZP_06816537.1| transcription elongation factor greA [Staphylococcus aureus A8819]
gi|295428187|ref|ZP_06820819.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296276729|ref|ZP_06859236.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MR1]
gi|297207670|ref|ZP_06924105.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297245686|ref|ZP_06929551.1| transcription elongation factor greA [Staphylococcus aureus A8796]
gi|297590846|ref|ZP_06949484.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MN8]
gi|300911752|ref|ZP_07129195.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus TCH70]
gi|304380793|ref|ZP_07363460.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|54037220|sp|P64284|GREA_STAAW RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54037228|sp|P99156|GREA_STAAN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54041330|sp|P64283|GREA_STAAM RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|56748966|sp|Q6G8V9|GREA_STAAS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|56749020|sp|Q6GG93|GREA_STAAR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71152090|sp|Q5HFF2|GREA_STAAC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123291785|sp|Q2FXW7|GREA_STAA8 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123722377|sp|Q2FGB6|GREA_STAA3 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|123740964|sp|Q2YT68|GREA_STAAB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166200745|sp|A7X319|GREA_STAA1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|172048917|sp|A6QHF1|GREA_STAAE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189042249|sp|A6U279|GREA_STAA2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189042250|sp|A5ITD5|GREA_STAA9 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189042251|sp|A8Z4E8|GREA_STAAT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|13701408|dbj|BAB42702.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus N315]
gi|14247381|dbj|BAB57772.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus Mu50]
gi|21204729|dbj|BAB95425.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus MW2]
gi|49241984|emb|CAG40681.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus MRSA252]
gi|49244886|emb|CAG43347.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus MSSA476]
gi|57286187|gb|AAW38281.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus COL]
gi|82656741|emb|CAI81170.1| transcription elongation factor [Staphylococcus aureus RF122]
gi|87127671|gb|ABD22185.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87202977|gb|ABD30787.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|147741160|gb|ABQ49458.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus JH9]
gi|149946611|gb|ABR52547.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus JH1]
gi|150374523|dbj|BAF67783.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156722063|dbj|BAF78480.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus Mu3]
gi|160368646|gb|ABX29617.1| elongation factor GreA [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253728895|gb|EES97624.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus TCH130]
gi|257271428|gb|EEV03574.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 55/2053]
gi|257275236|gb|EEV06723.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257278236|gb|EEV08878.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 68-397]
gi|257281812|gb|EEV11949.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus E1410]
gi|257283985|gb|EEV14108.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus M876]
gi|257787657|gb|EEV25997.1| transcription elongation factor greA [Staphylococcus aureus A9781]
gi|257840166|gb|EEV64630.1| transcription elongation factor GreA [Staphylococcus aureus A9763]
gi|257843893|gb|EEV68287.1| transcription elongation factor greA [Staphylococcus aureus A9719]
gi|257845657|gb|EEV69689.1| transcription elongation factor greA [Staphylococcus aureus A9635]
gi|257848228|gb|EEV72219.1| transcription elongation factor greA [Staphylococcus aureus A9299]
gi|257851053|gb|EEV74996.1| transcription elongation factor greA [Staphylococcus aureus A8115]
gi|257854429|gb|EEV77378.1| transcription elongation factor greA [Staphylococcus aureus A6300]
gi|257858046|gb|EEV80935.1| transcription elongation factor greA [Staphylococcus aureus A6224]
gi|257861721|gb|EEV84520.1| transcription elongation factor greA [Staphylococcus aureus A5948]
gi|257864318|gb|EEV87068.1| transcription elongation factor greA [Staphylococcus aureus A5937]
gi|259160902|gb|EEW45922.1| transcription elongation factor [Staphylococcus aureus 930918-3]
gi|259163252|gb|EEW47811.1| transcription elongation factor [Staphylococcus aureus D30]
gi|262075526|gb|ACY11499.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus ED98]
gi|269941096|emb|CBI49482.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus TW20]
gi|282313545|gb|EFB43940.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus C101]
gi|282317195|gb|EFB47569.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus C427]
gi|282319366|gb|EFB49718.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus D139]
gi|282321596|gb|EFB51921.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus M899]
gi|282324942|gb|EFB55252.1| transcription elongation factor GreB [Staphylococcus aureus subsp.
aureus WBG10049]
gi|282327193|gb|EFB57488.1| transcription elongation factor GreB [Staphylococcus aureus subsp.
aureus WW2703/97]
gi|282331309|gb|EFB60823.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus Btn1260]
gi|282590051|gb|EFB95133.1| transcription elongation factor greA [Staphylococcus aureus A10102]
gi|282594505|gb|EFB99490.1| transcription elongation factor greA [Staphylococcus aureus A9765]
gi|282595809|gb|EFC00773.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus C160]
gi|282764431|gb|EFC04557.1| transcription elongation factor greA [Staphylococcus aureus A8117]
gi|283460831|gb|EFC07921.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus H19]
gi|283470887|emb|CAQ50098.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Staphylococcus aureus subsp. aureus ST398]
gi|283790520|gb|EFC29337.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus A017934/97]
gi|285817292|gb|ADC37779.1| Transcription elongation factor GreA [Staphylococcus aureus
04-02981]
gi|290920315|gb|EFD97381.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus M1015]
gi|291095156|gb|EFE25421.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus 58-424]
gi|291466871|gb|EFF09391.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus M809]
gi|294824665|gb|EFG41088.1| transcription elongation factor greA [Staphylococcus aureus A9754]
gi|294968479|gb|EFG44503.1| transcription elongation factor greA [Staphylococcus aureus A8819]
gi|295128545|gb|EFG58179.1| transcription elongation factor greA [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|296887687|gb|EFH26585.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297177337|gb|EFH36589.1| transcription elongation factor greA [Staphylococcus aureus A8796]
gi|297575732|gb|EFH94448.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MN8]
gi|298694890|gb|ADI98112.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus ED133]
gi|300885998|gb|EFK81200.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus TCH70]
gi|302333284|gb|ADL23477.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302751439|gb|ADL65616.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|304340669|gb|EFM06602.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312437922|gb|ADQ76993.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus TCH60]
gi|312829997|emb|CBX34839.1| transcription elongation factor greA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315195510|gb|EFU25897.1| elongation factor GreA [Staphylococcus aureus subsp. aureus CGS00]
gi|315198693|gb|EFU29021.1| elongation factor GreA [Staphylococcus aureus subsp. aureus CGS01]
gi|320140503|gb|EFW32357.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MRSA131]
gi|320144042|gb|EFW35811.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus MRSA177]
gi|323439043|gb|EGA96775.1| transcription elongation factor GreA [Staphylococcus aureus O11]
gi|323442814|gb|EGB00439.1| transcription elongation factor GreA [Staphylococcus aureus O46]
gi|329314285|gb|AEB88698.1| Transcription elongation factor greA [Staphylococcus aureus subsp.
aureus T0131]
gi|329727213|gb|EGG63669.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus 21172]
gi|329728459|gb|EGG64896.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus 21189]
gi|329733259|gb|EGG69596.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
aureus 21193]
Length = 158
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 98/155 (63%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +GF+K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 5 KQYPMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E+++ A +I+ T + + G TV+ VE ++++YQIVG E+D +G +S
Sbjct: 65 IQRIEHMLRNALIIE-DTGDNNVVKIGKTVTFVELPGDEEESYQIVGSAESDAFNGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
SP+A+ALIGK L D + V P GGE +I+ +
Sbjct: 124 ESPMAKALIGKGLDDEVRVPLPNGGEMNVKIVNIQ 158
>gi|116625760|ref|YP_827916.1| GreA/GreB family elongation factor [Candidatus Solibacter usitatus
Ellin6076]
gi|116228922|gb|ABJ87631.1| GreA/GreB family elongation factor [Candidatus Solibacter usitatus
Ellin6076]
Length = 164
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 56/146 (38%), Positives = 88/146 (60%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
K+Q E+ + E + K I +AR +GDL ENAEY AAK+ Q R+ +L++ + +
Sbjct: 6 KKLQDEITALEYELHVDLPKEILKARLHGDLKENAEYHAAKDRQGFVSARLGQLKSRLGQ 65
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
+ID + + D+ G+TV +++ S + Y +V +EAD +G VS +SPI RAL+G
Sbjct: 66 LAMIDFTKIPRDKAGLGSTVVVLDVKSDQEITYHLVTSEEADAPNGKVSTTSPIGRALLG 125
Query: 133 KELGDIISVNAPGGEKTYEILQVLWI 158
K +GD + V +PGG K EIL++ I
Sbjct: 126 KTVGDEVKVMSPGGVKELEILKLTTI 151
>gi|197117113|ref|YP_002137540.1| transcription elongation factor GreA/GreB domain-containing protein
[Geobacter bemidjiensis Bem]
gi|197086473|gb|ACH37744.1| transcription elongation factor GreA/GreB domain protein [Geobacter
bemidjiensis Bem]
Length = 158
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 91/150 (60%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++++G ++Q+ + + ERPR++K +++A A GD SENAEY +K+ + + L
Sbjct: 6 ISAEGRKRLQERYDFLWETERPRMVKNMADAAAEGDRSENAEYIYSKKRLREIDRELRHL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ ++ ++FG VS ++ G+++ YQ+VG E DV +G +S+ SP+
Sbjct: 66 GDRLKVVKVV-YPPLNPSTVSFGCWVSYEDEE-GEERCYQLVGPDEFDVTAGKISVDSPV 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+AL+G+++ D I++ P G+ T I+ +
Sbjct: 124 GKALLGRKVDDEITIKRPAGDLTVTIVAIS 153
>gi|326387218|ref|ZP_08208828.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
DSM 19370]
gi|326208399|gb|EGD59206.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
DSM 19370]
Length = 161
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T G ++ ERP+I++ +S A GD SEN +Y ++ + ++
Sbjct: 7 PITPAGMAALRARYDHLLGTERPQIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRELSH 66
Query: 66 LENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L + A VID +R+ FGATV + +++ ++ +VGD E D GL+ +
Sbjct: 67 LARRMKAARVIDPVQQQERERVLFGATVEIADEDDN-RRTLTLVGDDEQDAGKGLIGWGA 125
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
PIARAL G +GD+ V PGGEK +EI+ + +
Sbjct: 126 PIARALRGARVGDLRRVRLPGGEKEWEIMTISY 158
>gi|253732265|ref|ZP_04866430.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253724054|gb|EES92783.1| transcription elongation factor [Staphylococcus aureus subsp.
aureus USA300_TCH959]
Length = 158
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 98/155 (63%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +GF+K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 5 KQYPMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E+++ A +I+ T + + G TV+ VE ++++YQIVG E+D +G +S
Sbjct: 65 IQRIEHMLRNALIIE-DTGDNNIVKIGKTVTFVELPGDEEESYQIVGSAESDAFNGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
SP+A+ALIGK L D + V P GGE +I+ +
Sbjct: 124 ESPMAKALIGKGLDDEVRVPLPNGGEMNVKIVNIQ 158
>gi|224476708|ref|YP_002634314.1| transcription elongation factor GreA [Staphylococcus carnosus
subsp. carnosus TM300]
gi|254799567|sp|B9DNJ3|GREA_STACT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|222421315|emb|CAL28129.1| putative transcription elongation factor,similar to GreA
[Staphylococcus carnosus subsp. carnosus TM300]
Length = 160
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 61/155 (39%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +GF+K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 5 KQYPMTQEGFEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E++I A +I+ S + + G TV+ +E G+++ YQIVG EAD +G +S
Sbjct: 65 IQRIEHMIRNALIIEDS-GDNNVVQIGKTVTFIEIPDGEEEVYQIVGSAEADAFNGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
SPIA++LIGK L D + V P G E +I +
Sbjct: 124 ESPIAKSLIGKHLDDEVRVPLPNGAEIKVKITNIQ 158
>gi|24380100|ref|NP_722055.1| transcription elongation factor GreA [Streptococcus mutans UA159]
gi|290579921|ref|YP_003484313.1| putative transcription elongation factor [Streptococcus mutans
NN2025]
gi|81450943|sp|Q8DSP7|GREA_STRMU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|24378096|gb|AAN59361.1|AE015001_6 putative transcription elongation factor GreA [Streptococcus mutans
UA159]
gi|254996820|dbj|BAH87421.1| putative transcription elongation factor [Streptococcus mutans
NN2025]
Length = 160
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T ++++QEL + RP +I+ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MSEKTYPMTLAEKEQLEQELEELKLVRRPEVIERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ +E I AE++D ++ + +A G TV + E + D+ Y IVG ADV +G
Sbjct: 61 EGQISSIETKIRYAEIVDSDAVAKNEVAIGKTVIVREVGTNDEDTYSIVGAAGADVFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK+ GD + + +P G EI++V
Sbjct: 121 ISNESPIAQALIGKKTGDKVMIESPAGSYQVEIVKVK 157
>gi|269217202|ref|ZP_06161056.1| transcription elongation factor GreA [Slackia exigua ATCC 700122]
gi|269129339|gb|EEZ60424.1| transcription elongation factor GreA [Slackia exigua ATCC 700122]
Length = 161
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 54/158 (34%), Positives = 95/158 (60%), Gaps = 4/158 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++I +T +G K+++EL + + E+R + + I AR +GD+SEN+EY AK Q L E
Sbjct: 7 MANEIVLTPEGKQKLEEELHFLETEKRAEVGERIRVAREFGDISENSEYDDAKNEQGLME 66
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A++ +I++ A +++ S +R+ G+TV++ G ++ + IVG EADV SG +
Sbjct: 67 ARIAQINDILSNAVLVEAPKRS-NRVNIGSTVTV--DMGGRERVFTIVGAAEADVSSGKI 123
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
S SP+ AL+G + GD + P G +I+++
Sbjct: 124 SNESPVGAALLGGKKGDHFTAEGPTGRVIEMDIVKIEH 161
>gi|300855815|ref|YP_003780799.1| putative transcription elongation factor [Clostridium ljungdahlii
DSM 13528]
gi|300435930|gb|ADK15697.1| predicted transcription elongation factor [Clostridium ljungdahlii
DSM 13528]
Length = 154
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 51/151 (33%), Positives = 85/151 (56%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T + DK+++EL +R +R I K A A+GD SENAEY+ A N+ R+
Sbjct: 2 KNILTQENIDKLREELDYRMTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L ++I+ A VID+ + I + + D++ +V +AD ++ L+SI
Sbjct: 62 QYLLSMISTATVIDVKSADKSVIGVNSKFKIKFVEDEDEEIVSLVTTIDADPENMLISIE 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
S + +AL+GK++GD + V+AP + T EIL+
Sbjct: 122 SDLGKALVGKKVGDTVEVDAPSEKYTVEILE 152
>gi|306829823|ref|ZP_07463010.1| transcription elongation factor GreA [Streptococcus mitis ATCC
6249]
gi|304427834|gb|EFM30927.1| transcription elongation factor GreA [Streptococcus mitis ATCC
6249]
Length = 160
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ D +A G TV++ E D++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDAVALDEVAIGKTVTIQEVGEDDEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD ++ P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYQVKILKVE 157
>gi|261749563|ref|YP_003257249.1| transcription elongation factor [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
gi|261497656|gb|ACX84106.1| transcription elongation factor [Blattabacterium sp. (Periplaneta
americana) str. BPLAN]
Length = 162
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 59/153 (38%), Positives = 95/153 (62%), Gaps = 1/153 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G K+QQE+ + ERP+I I+EAR GDLSENAEY A KE Q E +A+
Sbjct: 8 YITKEGLKKLQQEIERLENIERPKISMQIAEARDKGDLSENAEYDAIKEAQEFLEMNIAK 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ A +ID S ++ R++ +TV + G ++ Y +V + EAD++SG +SI++P
Sbjct: 68 LKKKLSNARIIDGSQINRTRVSILSTVRVKNLTYGGEQIYTLVPEGEADLKSGKISINTP 127
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
I+ L+GK++G I + P YEIL++ +
Sbjct: 128 ISTGLLGKQVGQIAHIKLPNKMILDYEILEIAF 160
>gi|167756790|ref|ZP_02428917.1| hypothetical protein CLORAM_02339 [Clostridium ramosum DSM 1402]
gi|237734508|ref|ZP_04564989.1| transcription elongation factor greA [Mollicutes bacterium D7]
gi|167702965|gb|EDS17544.1| hypothetical protein CLORAM_02339 [Clostridium ramosum DSM 1402]
gi|229382328|gb|EEO32419.1| transcription elongation factor greA [Coprobacillus sp. D7]
Length = 161
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 52/157 (33%), Positives = 93/157 (59%), Gaps = 3/157 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K+ +T G +K++QE ERP++I+ + AR+ GDLSENA+Y AA+E Q E R
Sbjct: 4 EKVLLTQSGVEKLEQERDNLINVERPKVIEELQLARSQGDLSENADYDAAREKQAHLESR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVE--KNSGDKKNYQIVGDQEADVQSGLV 120
+ E++ ++ AEVI M + G TV++++ + + ++YQIVG E D +G +
Sbjct: 64 IKEIDYMLQNAEVISEEQMDLKVVKPGTTVTILDLSEKDAEPESYQIVGYTETDPLNGKI 123
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S SP+A+A++G + +I++V +I+ + +
Sbjct: 124 SNESPLAKAVLGHGVNEIVTVGV-ADPYDVKIVNIEF 159
>gi|309775361|ref|ZP_07670366.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium
3_1_53]
gi|308916878|gb|EFP62613.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium
3_1_53]
Length = 159
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 91/154 (59%), Gaps = 2/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K VT +G D++ +E R +I+ + EARA GDLSENA+Y AA++ Q E R
Sbjct: 4 EKFLVTKEGLDELLKEQDNLIHVVRDEVIRELQEARAQGDLSENADYDAARDRQARVEAR 63
Query: 63 MAELENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ +LE +I AE+I D + + I+ G+TV++ + ++ +++ Y IVG EAD +G +
Sbjct: 64 IRDLEAMIANAEIISGDKKSTNKKTISLGSTVTIQDLSTNEEETYTIVGSIEADPLNGKL 123
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
S +P+A +L+ ++GD++ + +++
Sbjct: 124 SNITPLATSLMDHKVGDVVEIELAEEPYQVKVID 157
>gi|295425713|ref|ZP_06818400.1| transcription elongation factor GreA [Lactobacillus amylolyticus
DSM 11664]
gi|295064729|gb|EFG55650.1| transcription elongation factor GreA [Lactobacillus amylolyticus
DSM 11664]
Length = 153
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ KI+ E+ ++ +RPR IK + +AR+ GDLSEN EY AK +
Sbjct: 1 MVYYQKMTPEGYKKIEDEIARLKK-DRPRRIKILQQARSMGDLSENTEYTEAKRDLGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + AEVI+ + ++ G+TV L + + YQIVG EAD+ G
Sbjct: 60 SRLRYLGKQLKYAEVIEAK--NYGKVNMGSTVVLKFDDDEKTEEYQIVGRMEADLAKGKT 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ SP+ +A++ ++ G ++V+AP G+ + I++V
Sbjct: 118 AFDSPLGQAIMKQQAGSTVTVSAPAGDYSVTIVEVK 153
>gi|168209613|ref|ZP_02635238.1| transcription elongation factor GreA [Clostridium perfringens B
str. ATCC 3626]
gi|170712210|gb|EDT24392.1| transcription elongation factor GreA [Clostridium perfringens B
str. ATCC 3626]
Length = 154
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 82/151 (54%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + K+++EL +R R +I K EA A+GD SENAEY+ A N+ R+
Sbjct: 4 YLTEENVRKLREELDYRMSVVRAKIAKEKLEAAAHGDRSENAEYKEACRNYRENDNRIQY 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +I+ A ++D + + + + D+ +V + D+++ +SI S
Sbjct: 64 LLTMISTAIIVDEESNDKSTLGLNSKARIKFVEDDDEDVVTLVTTMDLDLENMCISIESD 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +AL+GK +GD++ V APGG T E+L++L
Sbjct: 124 LGKALMGKNVGDVVEVEAPGGNYTVEVLEIL 154
>gi|319935513|ref|ZP_08009948.1| transcription elongation factor [Coprobacillus sp. 29_1]
gi|319809544|gb|EFW05961.1| transcription elongation factor [Coprobacillus sp. 29_1]
Length = 161
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 93/158 (58%), Gaps = 3/158 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + +T G +K+++E ERP++I+ + AR+ GDLSENA+Y +A++ Q E R
Sbjct: 4 DAVLLTQSGVEKLKKEREQLINIERPKVIEELQLARSQGDLSENADYDSARDKQAHIESR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG--DKKNYQIVGDQEADVQSGLV 120
+ E++ ++ ++ID S M GATV++++ + + +++ IVG E D +G +
Sbjct: 64 IKEIDQMLLHVQIIDESQMDSAVAKPGATVTILDLSEEGAEPESFTIVGTFETDPLNGKI 123
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S SP+A+A++ + +I+SV +IL++ +I
Sbjct: 124 SNESPLAKAILEHGVNEIVSVGV-AEPYEVKILKIEYI 160
>gi|307706224|ref|ZP_07643041.1| transcription elongation factor greA [Streptococcus mitis SK321]
gi|307708401|ref|ZP_07644867.1| transcription elongation factor GreA [Streptococcus mitis NCTC
12261]
gi|307615500|gb|EFN94707.1| transcription elongation factor GreA [Streptococcus mitis NCTC
12261]
gi|307618414|gb|EFN97564.1| transcription elongation factor greA [Streptococcus mitis SK321]
Length = 160
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLAEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ +++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDSVADDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD ++ P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157
>gi|293365798|ref|ZP_06612504.1| transcription elongation factor GreA [Streptococcus oralis ATCC
35037]
gi|307703334|ref|ZP_07640278.1| transcription elongation factor GreA [Streptococcus oralis ATCC
35037]
gi|291315731|gb|EFE56178.1| transcription elongation factor GreA [Streptococcus oralis ATCC
35037]
gi|307623110|gb|EFO02103.1| transcription elongation factor GreA [Streptococcus oralis ATCC
35037]
Length = 160
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEVGEDEEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI RALIGK+ GD ++ P G +IL+V
Sbjct: 121 VSNESPIGRALIGKKTGDTATIETPVGSYEVKILKVE 157
>gi|307704459|ref|ZP_07641369.1| transcription elongation factor greA [Streptococcus mitis SK597]
gi|307621979|gb|EFO01006.1| transcription elongation factor greA [Streptococcus mitis SK597]
Length = 160
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLAEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ +++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDSVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD ++ P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157
>gi|255523780|ref|ZP_05390745.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
gi|255512483|gb|EET88758.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
Length = 154
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 85/153 (55%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T + DK+++EL +R +R +I K A A+GD SENAEY+ A N+ R+
Sbjct: 2 KNILTQENIDKLKEELDYRMTVKRAQIAKEKLVAAAHGDRSENAEYKEACANYRENDNRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L +I+ A V+D + I + + + D++ +V +AD ++ L+S+
Sbjct: 62 QYLLTMISTAIVVDDKSQDKSVIGVNSKFKIKFVDDEDEEVVSLVTTVDADPENMLISVE 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL+ K+ GDI+ VNAP T EIL++L
Sbjct: 122 SDLGKALMSKKAGDIVEVNAPSENYTVEILEIL 154
>gi|251811021|ref|ZP_04825494.1| elongation factor GreA [Staphylococcus epidermidis BCM-HMP0060]
gi|293366432|ref|ZP_06613110.1| transcription elongation factor GreA [Staphylococcus epidermidis
M23864:W2(grey)]
gi|251805439|gb|EES58096.1| elongation factor GreA [Staphylococcus epidermidis BCM-HMP0060]
gi|291319466|gb|EFE59834.1| transcription elongation factor GreA [Staphylococcus epidermidis
M23864:W2(grey)]
Length = 161
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 97/155 (62%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 8 KQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 67
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S
Sbjct: 68 IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISN 126
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
SP+A+ALIGK L D + V P GGE +I+++
Sbjct: 127 ESPMAKALIGKGLNDQVRVPLPNGGEMNVKIVEIK 161
>gi|303236653|ref|ZP_07323234.1| transcription elongation factor GreA [Prevotella disiens
FB035-09AN]
gi|302483157|gb|EFL46171.1| transcription elongation factor GreA [Prevotella disiens
FB035-09AN]
Length = 156
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 92/151 (60%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+D + EL+ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+ E
Sbjct: 3 YMSQEGYDNLVAELQHLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQAHLETRINE 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ I +A+++D+S +S + + +TV + + K Y IV + EA+++ G +SI +P
Sbjct: 63 MKMTIAQAKIVDMSRLSNEAVQIMSTVEMTNLGNNSKMKYTIVSESEANLKLGKISIKTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ K++GD + + P G+ + ++
Sbjct: 123 IAQGLLNKKVGDEVEIEIPRGKIKLRVDKIS 153
>gi|72160851|ref|YP_288508.1| transcription elongation factor GreA [Thermobifida fusca YX]
gi|71914583|gb|AAZ54485.1| prokaryotic transcription elongation factor GreA [Thermobifida
fusca YX]
Length = 167
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 76/150 (50%), Gaps = 2/150 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D++ EL + R I I AR GDL EN Y AAKE Q E R+A
Sbjct: 11 WLTQEAYDRLTAELEYLSGPGRIEIADRIEAAREEGDLRENGGYHAAKEEQGKIEARIAH 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L++I++ A V G + G TV++ + ++ + + +E+ + S SP
Sbjct: 71 LQSILSNARVGQAPQREG-VVGPGMTVTIKFEGDEEEMTFLLASREESGAPIDVYSPKSP 129
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
+ A+ GK++G+ ++ P G++ T EIL
Sbjct: 130 LGEAINGKKVGEKVTYKLPSGKEATVEILD 159
>gi|227894423|ref|ZP_04012228.1| transcription elongation factor GreA [Lactobacillus ultunensis DSM
16047]
gi|227863793|gb|EEJ71214.1| transcription elongation factor GreA [Lactobacillus ultunensis DSM
16047]
Length = 153
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 87/156 (55%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK +
Sbjct: 1 MVYFQKMTPEGYKQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + AE++ T ++ G +V L + D + Y+IVG EAD+ +G +
Sbjct: 60 SRLRYLGKQLKYAEIV--KTKDDGKVDLGKSVVLKFDDDDDTEQYKIVGRMEADLAAGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +A++ KE G ++V AP GE I++V
Sbjct: 118 SFDSPLGQAIMKKEAGTTVAVEAPAGEYKVTIVEVK 153
>gi|239637583|ref|ZP_04678555.1| transcription elongation factor GreA [Staphylococcus warneri
L37603]
gi|239596801|gb|EEQ79326.1| transcription elongation factor GreA [Staphylococcus warneri
L37603]
gi|330685471|gb|EGG97125.1| transcription elongation factor GreA [Staphylococcus epidermidis
VCU121]
Length = 158
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 62/155 (40%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +GF+K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 5 KQYPMTQEGFEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E++I A +I+ T + + G TV+ VE ++++YQIVG EAD G +S
Sbjct: 65 IQRIEHMIRNALIIE-DTGDNNTVQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
SP+A ALIGK L D + V P GGE +I+ +
Sbjct: 124 ESPMASALIGKSLDDEVRVPLPNGGEMNVKIVDIK 158
>gi|322377004|ref|ZP_08051497.1| transcription elongation factor GreA [Streptococcus sp. M334]
gi|321282811|gb|EFX59818.1| transcription elongation factor GreA [Streptococcus sp. M334]
Length = 160
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ +++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDSVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD +V P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKILKVE 157
>gi|312194554|ref|YP_004014615.1| GreA/GreB family elongation factor [Frankia sp. EuI1c]
gi|311225890|gb|ADP78745.1| GreA/GreB family elongation factor [Frankia sp. EuI1c]
Length = 160
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 74/156 (47%), Gaps = 2/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T + +D+++ EL + R + I AR GDL EN Y AAKE Q E
Sbjct: 1 MTQQTWLTQEAYDRLRSELDYLTTTGRTELANKIEAAREEGDLKENGGYHAAKEEQGKQE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +L +++ A+V + + S G V + + + + + I ++ +
Sbjct: 61 ARIRQLNDLLRDAKVGEAAA-STGVAGPGTVVEVRFQGDKETEKFLIGSREDHSAPIDVF 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
S +SP+ A+ G + GD ++ P G + EI+ V
Sbjct: 120 SPASPLGGAVTGHKAGDKVTYTLPNGRNASVEIVSV 155
>gi|312874044|ref|ZP_07734079.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2052A-d]
gi|329920936|ref|ZP_08277485.1| transcription elongation factor GreA [Lactobacillus iners SPIN
1401G]
gi|311090384|gb|EFQ48793.1| transcription elongation factor GreA [Lactobacillus iners LEAF
2052A-d]
gi|328935501|gb|EGG31972.1| transcription elongation factor GreA [Lactobacillus iners SPIN
1401G]
Length = 153
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ KI+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK +
Sbjct: 1 MVYFQKMTPEGYKKIETEIAELKK-DRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + A+++ + I G+ V + ++ + + Y IVG EADV +
Sbjct: 60 SRLRFLNKQLQYAQIV--QKNNDGMIDLGSQVEIQFEDEVEIEPYTIVGTLEADVIDNKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ AL+ K+ GD++ VNAP G I+ V
Sbjct: 118 SFDSPLGAALMHKKAGDLVKVNAPAGSYQVRIISVK 153
>gi|157150808|ref|YP_001449835.1| transcription elongation factor GreA [Streptococcus gordonii str.
Challis substr. CH1]
gi|262282147|ref|ZP_06059916.1| transcription elongation factor greA [Streptococcus sp. 2_1_36FAA]
gi|189042252|sp|A8AVM5|GREA_STRGC RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|157075602|gb|ABV10285.1| transcription elongation factor greA [Streptococcus gordonii str.
Challis substr. CH1]
gi|262262601|gb|EEY81298.1| transcription elongation factor greA [Streptococcus sp. 2_1_36FAA]
Length = 160
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLAEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE++D ++ D + G TV++ E +K+ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVDSDAVAKDEVGIGKTVTIQEVGETEKEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GDI +V P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKKGDIATVETPVGSYDVKILKVE 157
>gi|282878396|ref|ZP_06287184.1| putative transcription elongation factor GreA [Prevotella buccalis
ATCC 35310]
gi|281299474|gb|EFA91855.1| putative transcription elongation factor GreA [Prevotella buccalis
ATCC 35310]
Length = 155
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 89/151 (58%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+D + EL + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ +
Sbjct: 3 YMSQEGYDNLVAELTRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ I A+++D+S +S D + + V + + K Y IV + EAD+++G +SI +P
Sbjct: 63 MKLTIAEAKIVDVSRLSADTVQILSKVEMTNMKTKSKMVYTIVSESEADLKAGKISIKTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ K+ GD + + P G I ++
Sbjct: 123 IAQGLLNKKEGDEVDIKIPAGTIKLRIDKIT 153
>gi|228475181|ref|ZP_04059907.1| transcription elongation factor GreA [Staphylococcus hominis SK119]
gi|314936274|ref|ZP_07843621.1| transcription elongation factor GreA [Staphylococcus hominis subsp.
hominis C80]
gi|228270792|gb|EEK12194.1| transcription elongation factor GreA [Staphylococcus hominis SK119]
gi|313654893|gb|EFS18638.1| transcription elongation factor GreA [Staphylococcus hominis subsp.
hominis C80]
Length = 158
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 60/155 (38%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 5 KQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E+++ A +I+ + I G TV+ VE ++++YQIVG EAD G +S
Sbjct: 65 IQRIEHMLRYALIIE-DNGDNNVIQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
SP+A+ALIGK L D + V P GGE +I+ +
Sbjct: 124 ESPMAKALIGKNLNDEVRVPLPNGGEMKVKIVDIK 158
>gi|254283435|ref|ZP_04958403.1| transcription elongation factor GreB [gamma proteobacterium
NOR51-B]
gi|219679638|gb|EED35987.1| transcription elongation factor GreB [gamma proteobacterium
NOR51-B]
Length = 168
Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G ++ EL+ +EERP + A+ A GD SEN +Y K+ + R+
Sbjct: 14 YITPEGEAALRAELQALWKEERPVVTAAVQAAAGNGDRSENGDYIYGKKRLREIDSRVRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V+ + FGA V L + G++ +++VG E D+Q+G +S SP
Sbjct: 74 LRKRLEELTVVRDPPSDRGKAYFGAWVDLENPD-GERVTWRVVGPDEFDLQAGKLSCDSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ RAL+GK + I++++P G++ + +L V +
Sbjct: 133 LGRALLGKPIDSEITIDSPSGDQYWYLLDVRY 164
>gi|223044081|ref|ZP_03614120.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Staphylococcus capitis SK14]
gi|314933776|ref|ZP_07841141.1| transcription elongation factor GreA [Staphylococcus caprae C87]
gi|222442475|gb|EEE48581.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Staphylococcus capitis SK14]
gi|313653926|gb|EFS17683.1| transcription elongation factor GreA [Staphylococcus caprae C87]
Length = 158
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 95/155 (61%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +G+++++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 5 KQYPMTQEGYEQLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E++I A +I+ + + G TV+ VE ++++YQIVG EAD G +S
Sbjct: 65 IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
SP+A ALIGK L D + V P GGE +I+ +
Sbjct: 124 ESPMANALIGKGLNDEVRVPLPNGGEMNVKIVDIK 158
>gi|270292312|ref|ZP_06198523.1| transcription elongation factor GreA [Streptococcus sp. M143]
gi|315613482|ref|ZP_07888390.1| transcription elongation factor GreA [Streptococcus sanguinis ATCC
49296]
gi|322375565|ref|ZP_08050077.1| transcription elongation factor GreA [Streptococcus sp. C300]
gi|331266043|ref|YP_004325673.1| transcription elongation factor GreA [Streptococcus oralis Uo5]
gi|270278291|gb|EFA24137.1| transcription elongation factor GreA [Streptococcus sp. M143]
gi|315314478|gb|EFU62522.1| transcription elongation factor GreA [Streptococcus sanguinis ATCC
49296]
gi|321279273|gb|EFX56314.1| transcription elongation factor GreA [Streptococcus sp. C300]
gi|326682715|emb|CBZ00332.1| transcription elongation factor GreA [Streptococcus oralis Uo5]
Length = 160
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEVGEDEEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI RALIGK+ GD ++ P G +IL+V
Sbjct: 121 VSNESPIGRALIGKKTGDTATIETPVGSYDVKILKVE 157
>gi|288928758|ref|ZP_06422604.1| transcription elongation factor GreA [Prevotella sp. oral taxon 317
str. F0108]
gi|288329742|gb|EFC68327.1| transcription elongation factor GreA [Prevotella sp. oral taxon 317
str. F0108]
Length = 154
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 90/151 (59%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G++K+ ELR + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ +
Sbjct: 3 YMSQEGYEKLVAELRRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I A+++D S +S D + + V + + K Y IV + EA+++ G ++I++P
Sbjct: 63 LKVAINEAKIVDTSRLSSDAVQILSKVQMTNLTTKAKMTYTIVSESEANLKEGKIAITTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ K+ GD + + P G I ++
Sbjct: 123 IAQGLLNKKEGDEVEITIPRGTIKLRIDKIT 153
>gi|160915319|ref|ZP_02077532.1| hypothetical protein EUBDOL_01328 [Eubacterium dolichum DSM 3991]
gi|158433118|gb|EDP11407.1| hypothetical protein EUBDOL_01328 [Eubacterium dolichum DSM 3991]
Length = 159
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 89/155 (57%), Gaps = 1/155 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K VT +G D++ +E R +I + EARA GDLSENA+Y AA+E Q E R
Sbjct: 5 EKFLVTKEGLDELVKEHDHLIHVVRDEVIIELQEARAQGDLSENADYDAAREHQAQVEAR 64
Query: 63 MAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ +LE +I +AE+I+ + G+TV++++ +S +++ Y IVG EAD +G +S
Sbjct: 65 IRDLEAMIAKAEIIEGDKKTKKKAVTLGSTVTILDMDSNEEETYTIVGSIEADPLNGKLS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+P+A AL+ + DI+ V+ +IL +
Sbjct: 125 NITPLAVALMDHKTNDIVEVSGAETPYEVKILSIK 159
>gi|116330420|ref|YP_800138.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Leptospira borgpetersenii serovar Hardjo-bovis
JB197]
gi|116124109|gb|ABJ75380.1| greA transcription elongation factor-related protein [Leptospira
borgpetersenii serovar Hardjo-bovis JB197]
Length = 927
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 86/151 (56%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I VT + ++ ++E E P K I EA+ GDL ENAEY+AA E Q + +
Sbjct: 767 ILVTRRALNRKKEEFEHLLNVEMPENSKDIGEAQERGDLRENAEYKAAMERQVQLQAAIK 826
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE I A ++D++ + D+I G T L +++G+ Y I+G +AD + ++S S
Sbjct: 827 RLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADTEKHIISYQS 886
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+A++L+GK++GD +N G E Y +L++
Sbjct: 887 PLAKSLLGKKVGDAAVLNLTGAETRYTVLEI 917
>gi|116328972|ref|YP_798692.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Leptospira borgpetersenii serovar Hardjo-bovis
L550]
gi|116121716|gb|ABJ79759.1| greA transcription elongation factor-related protein [Leptospira
borgpetersenii serovar Hardjo-bovis L550]
Length = 927
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 86/151 (56%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I VT + ++ ++E E P K I EA+ GDL ENAEY+AA E Q + +
Sbjct: 767 ILVTRRALNRKKEEFEHLLNVEMPENSKDIGEAQERGDLRENAEYKAAMERQVQLQAAIK 826
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE I A ++D++ + D+I G T L +++G+ Y I+G +AD + ++S S
Sbjct: 827 RLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADTEKHIISYQS 886
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+A++L+GK++GD +N G E Y +L++
Sbjct: 887 PLAKSLLGKKVGDAAVLNLTGAETRYTVLEI 917
>gi|259500870|ref|ZP_05743772.1| transcription elongation factor GreA [Lactobacillus iners DSM
13335]
gi|302190677|ref|ZP_07266931.1| transcription elongation factor GreA [Lactobacillus iners AB-1]
gi|309803670|ref|ZP_07697760.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners LactinV 11V1-d]
gi|309805761|ref|ZP_07699798.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners LactinV 09V1-c]
gi|312874748|ref|ZP_07734767.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners LEAF 2053A-b]
gi|315654050|ref|ZP_07906966.1| transcription elongation factor GreA [Lactobacillus iners ATCC
55195]
gi|325912329|ref|ZP_08174726.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners UPII 143-D]
gi|259167564|gb|EEW52059.1| transcription elongation factor GreA [Lactobacillus iners DSM
13335]
gi|308164268|gb|EFO66525.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners LactinV 11V1-d]
gi|308164881|gb|EFO67127.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners LactinV 09V1-c]
gi|311089493|gb|EFQ47918.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners LEAF 2053A-b]
gi|315488746|gb|EFU78392.1| transcription elongation factor GreA [Lactobacillus iners ATCC
55195]
gi|325475988|gb|EGC79157.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus iners UPII 143-D]
Length = 153
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ KI+ E+ ++ +RPR IK + EAR+ GDLSEN+EY AK +
Sbjct: 1 MVYFQKMTPEGYKKIETEIAELKK-DRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + A+++ + I G+ V + ++ + + Y IVG EADV +
Sbjct: 60 SRLRFLNKQLQYAQIV--QKNNDGVIDLGSQVEIQFEDEVEIEPYTIVGTLEADVIDNKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ AL+ K+ GD++ VNAP G I+ V
Sbjct: 118 SFDSPLGAALMHKKAGDLVKVNAPAGSYQVRIISVK 153
>gi|226355589|ref|YP_002785329.1| transcription elongation factor [Deinococcus deserti VCD115]
gi|226317579|gb|ACO45575.1| putative transcription elongation factor [Deinococcus deserti
VCD115]
Length = 156
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 88/158 (55%), Gaps = 4/158 (2%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M P +T +G+DK+++ L + R +I + + +A A GDL E+A Y A+ Q+ N
Sbjct: 1 MTKPRPTMTQRGYDKLKETLDHLKTTRREQISEYMGQAIADGDLRESAAYDEARMQQSEN 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A++E + A +I + S GA + + + + G + +++VG E D+ G
Sbjct: 61 EARIADIEYQLEHALII--AEDSAGGAGLGARIRVKD-DKGKEHQFELVGTYEVDILKGK 117
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S +SPI +AL GK G+ ++V P G +EIL V +
Sbjct: 118 ISDASPIGKALAGKHAGETVNVQLPKGTSRFEILAVEY 155
>gi|167745534|ref|ZP_02417661.1| hypothetical protein ANACAC_00225 [Anaerostipes caccae DSM 14662]
gi|317472902|ref|ZP_07932208.1| transcription elongation factor GreA [Anaerostipes sp. 3_2_56FAA]
gi|167655255|gb|EDR99384.1| hypothetical protein ANACAC_00225 [Anaerostipes caccae DSM 14662]
gi|316899622|gb|EFV21630.1| transcription elongation factor GreA [Anaerostipes sp. 3_2_56FAA]
Length = 159
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 86/155 (55%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T +G ++ EL+ + +R + + I EAR GDLSENAEY AAK+ Q E
Sbjct: 4 AKKNILTQEGLKTLEDELQDLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEA 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE I+ AEVID I+ G V L + ++ Y IVG EAD+ + +S
Sbjct: 64 RIEELEQILKNAEVIDE-EFQHGVISLGCLVKLEDLTFKEEVTYHIVGSTEADILNNKIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+PI +AL+G ++GD++ V G Y++L V
Sbjct: 123 NEAPIGKALLGAKIGDVVEVEGVGQVNQYKVLDVK 157
>gi|281425411|ref|ZP_06256324.1| transcription elongation factor GreA [Prevotella oris F0302]
gi|299141561|ref|ZP_07034697.1| transcription elongation factor GreA [Prevotella oris C735]
gi|281400404|gb|EFB31235.1| transcription elongation factor GreA [Prevotella oris F0302]
gi|298576897|gb|EFI48767.1| transcription elongation factor GreA [Prevotella oris C735]
Length = 156
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 89/151 (58%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+D + EL+ + ERP+ AI+EAR GDLSEN+EY AAKE Q E ++ +
Sbjct: 3 YMSQEGYDNLVAELQRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ I A+++D+S +S D + + V + + K Y IV + EA+++ G +SI +P
Sbjct: 63 MKVSIAEAKIVDLSRLSTDAVQIMSKVEMTNMGTKAKMVYTIVSESEANLKQGKISIKTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ + G+I+ V P G I ++
Sbjct: 123 IAQGLLNHKEGEIVEVKIPRGTIKLRIDKIS 153
>gi|27468211|ref|NP_764848.1| transcription elongation factor [Staphylococcus epidermidis ATCC
12228]
gi|57867085|ref|YP_188750.1| transcription elongation factor GreA [Staphylococcus epidermidis
RP62A]
gi|282875965|ref|ZP_06284832.1| transcription elongation factor GreA [Staphylococcus epidermidis
SK135]
gi|32129576|sp|Q8CSB3|GREA_STAES RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71152091|sp|Q5HNU0|GREA_STAEQ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|27315757|gb|AAO04892.1|AE016748_126 transcription elongation factor [Staphylococcus epidermidis ATCC
12228]
gi|57637743|gb|AAW54531.1| transcription elongation factor GreA [Staphylococcus epidermidis
RP62A]
gi|281294990|gb|EFA87517.1| transcription elongation factor GreA [Staphylococcus epidermidis
SK135]
gi|329724691|gb|EGG61197.1| transcription elongation factor GreA [Staphylococcus epidermidis
VCU144]
gi|329735364|gb|EGG71656.1| transcription elongation factor GreA [Staphylococcus epidermidis
VCU045]
gi|329737227|gb|EGG73481.1| transcription elongation factor GreA [Staphylococcus epidermidis
VCU028]
Length = 158
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 97/155 (62%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 5 KQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S
Sbjct: 65 IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
SP+A+ALIGK L D + V P GGE +I+++
Sbjct: 124 ESPMAKALIGKGLNDQVRVPLPNGGEMNVKIVEIK 158
>gi|323340754|ref|ZP_08081006.1| transcription elongation factor GreA [Lactobacillus ruminis ATCC
25644]
gi|323091877|gb|EFZ34497.1| transcription elongation factor GreA [Lactobacillus ruminis ATCC
25644]
Length = 157
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 62/158 (39%), Positives = 105/158 (66%), Gaps = 3/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ P+T +G +K+++EL + +R II+ I AR++GDLSEN+EY+AAK Q++
Sbjct: 1 MAEEKTFPMTLEGKEKLEKELEELKTTKRAEIIERIKIARSFGDLSENSEYEAAKNEQSI 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
EGR+ E+ N++ AE+ID ++ D +A G TV+ E++ + + YQIVG E+D +G
Sbjct: 61 LEGRIKEVTNMLNHAEIIDNGAIAEDEVAIGKTVTFQEEDD-EPETYQIVGAAESDPFNG 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ L+G ++G+ ++V PGG+ +I+ V
Sbjct: 120 KISNESPIAKGLVGHKVGETVTVETPGGDMQVKIISVE 157
>gi|269837141|ref|YP_003319369.1| GreA/GreB family elongation factor [Sphaerobacter thermophilus DSM
20745]
gi|269786404|gb|ACZ38547.1| GreA/GreB family elongation factor [Sphaerobacter thermophilus DSM
20745]
Length = 156
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 87/158 (55%), Gaps = 4/158 (2%)
Query: 1 MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + P +T++G +++EL + + P + I E GD+S+N+EY+ KE
Sbjct: 1 MASERPVTLTAEGKADLERELHHLRTVKLPDVTARIQELSMDGDVSDNSEYEDTKEELIQ 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ E+EN++ R VI G + G+ V++V+ +G + + +V +EA+ G
Sbjct: 61 LEARIREIENLLRRVRVIAPGKSDG-VVKLGSRVTIVD-ETGQAETWILVSPEEANTLQG 118
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL+ K +GD + V APGGE ++ I +V
Sbjct: 119 KISTESPVGAALLDKRVGDSVVVRAPGGETSFTIEKVE 156
>gi|70726310|ref|YP_253224.1| transcription elongation factor GreA [Staphylococcus haemolyticus
JCSC1435]
gi|123762316|sp|Q4L6V7|GREA_STAHJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|68447034|dbj|BAE04618.1| transcription elongation factor [Staphylococcus haemolyticus
JCSC1435]
Length = 158
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 98/155 (63%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +G++++++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 5 KQYPMTQEGYEQLEKELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E+++ A +I+ T + + G TV+ +E ++++YQIVG EAD +G +S
Sbjct: 65 IQRIEHMLRYALIIE-DTGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFNGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
SP+A+ALIGK L D + V P GGE +I+ +
Sbjct: 124 ESPMAKALIGKSLKDEVRVPLPNGGEINVKIVNIK 158
>gi|221194505|ref|ZP_03567562.1| transcription elongation factor GreA [Atopobium rimae ATCC 49626]
gi|221185409|gb|EEE17799.1| transcription elongation factor GreA [Atopobium rimae ATCC 49626]
Length = 159
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 59/156 (37%), Positives = 85/156 (54%), Gaps = 2/156 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+I +T +G K+ EL +R+ E+ I++ I EAR +GDLSEN+EY AAKE Q+ NE
Sbjct: 4 TKEIVLTPEGRQKLVDELAYREGEKHDEIVERIKEARGFGDLSENSEYDAAKEEQSHNES 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+ I++ A+V++ +A G TV L + G K Y IVG E + +S
Sbjct: 64 RINEIRQILSVAKVVEGDKKRKITVAIGTTVELEDAK-GKKAKYVIVGTTETNSLEHKIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
SP ALIG + GD + P G K Y I +
Sbjct: 123 NESPAGEALIGHKKGDEVEFTTPNGNVKKYTITAIT 158
>gi|296271052|ref|YP_003653684.1| transcription elongation factor GreA [Thermobispora bispora DSM
43833]
gi|296093839|gb|ADG89791.1| transcription elongation factor GreA [Thermobispora bispora DSM
43833]
Length = 167
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 82/159 (51%), Gaps = 4/159 (2%)
Query: 3 DKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
DK+ +T + +D+++ E + R I K I AR GDL EN Y AAK+ Q E
Sbjct: 7 DKVTWLTQEAYDRLKAEYEYLTGPARAEIAKKIEAAREEGDLRENGGYHAAKDEQGKLEA 66
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ L I+ A+V G + G TV++ ++ + + +E+ V + S
Sbjct: 67 RIYRLREILENAKVGQPPADDG-IVEPGMTVTVRFDGEDEEVTFLLASREESGVPIDVYS 125
Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQ-VLWI 158
+SP+ +A+ GK++G+ + P G+ ++ EIL+ V ++
Sbjct: 126 PNSPLGKAITGKKVGERATFTLPNGKQRSVEILEAVPYV 164
>gi|307298990|ref|ZP_07578792.1| GreA/GreB family elongation factor [Thermotogales bacterium
mesG1.Ag.4.2]
gi|306915415|gb|EFN45800.1| GreA/GreB family elongation factor [Thermotogales bacterium
mesG1.Ag.4.2]
Length = 157
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M K I +T +GF+ +++EL +++ I + I EAR GDLSEN+EY AK Q
Sbjct: 1 MKKKVIYLTQEGFNGMKEELESLRKKLMYDIAERIKEARELGDLSENSEYDEAKNEQGRI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ R+ +LE I+ AE+I+ + G V L+ ++ +K ++IV QEA++ G
Sbjct: 61 DSRIKQLEEILNNAEIIE-DDGDLSTVKLGYVVELLNIDTNEKSQFRIVNAQEANIFEGK 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPI R ++ ++ +++ V P G Y+IL +
Sbjct: 120 ISSDSPIGRGVLTHKVNEVVRVKTPAGWAKYKILTI 155
>gi|322391681|ref|ZP_08065149.1| transcription elongation factor GreA [Streptococcus peroris ATCC
700780]
gi|321145492|gb|EFX40885.1| transcription elongation factor GreA [Streptococcus peroris ATCC
700780]
Length = 160
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MVEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKVARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ D +A G TV++ E D++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEVGEDDEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GDI +V P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKTGDIATVETPVGSYDVKILKVE 157
>gi|242373910|ref|ZP_04819484.1| elongation factor GreA [Staphylococcus epidermidis M23864:W1]
gi|242348464|gb|EES40066.1| elongation factor GreA [Staphylococcus epidermidis M23864:W1]
Length = 158
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 95/155 (61%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +G+++++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 5 KQYPMTQEGYEQLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S
Sbjct: 65 IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
SP+A ALIGK L D + V P GGE +I+ +
Sbjct: 124 ESPMANALIGKGLNDEVRVPLPNGGEINVKIVDIK 158
>gi|158312680|ref|YP_001505188.1| transcription elongation factor GreA [Frankia sp. EAN1pec]
gi|158108085|gb|ABW10282.1| transcription elongation factor GreA [Frankia sp. EAN1pec]
Length = 161
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 1/156 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T + +++++ EL + R I I AR GDL EN Y AAKE Q E
Sbjct: 1 MTQQTWLTQEAYNRLRSELDYLTGTWRTEIAAKIEAAREEGDLKENGGYHAAKEEQGKQE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +L +++ A V S+ + G V + + + + I ++ +
Sbjct: 61 ARIRQLMDLLRDARVGQASSAASGEAGPGTIVEIRFPGEKETERFLIGSREDHSASIEVF 120
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
S +SP+ A+ G + GD + P G T EI+ V
Sbjct: 121 SPASPLGGAVTGHKAGDTVKYTLPNGRPATVEIVSV 156
>gi|319942272|ref|ZP_08016587.1| transcription elongation factor GreB [Sutterella wadsworthensis
3_1_45B]
gi|319804145|gb|EFW01045.1| transcription elongation factor GreB [Sutterella wadsworthensis
3_1_45B]
Length = 185
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 79/161 (49%), Gaps = 8/161 (4%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T + ++ E ERP ++ ++ A + GD SEN +Y K+ + R+
Sbjct: 19 KNYMTPACYRRLLDEREHLVNVERPDVVNVVAWAASNGDRSENGDYLYGKKRLREIDRRI 78
Query: 64 AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L I AEV+D + D++ FGAT L G+++ +IVG EAD + G VS
Sbjct: 79 RFLNKRIESAEVVDPAVHPETDQVFFGAT-VLYCNQRGEERKIRIVGIDEADAEHGDVSW 137
Query: 123 SSPIARALIGKELGDIISVNA------PGGEKTYEILQVLW 157
SPIAR + + GD + + P G T EIL+V +
Sbjct: 138 ISPIARVFLRRHEGDEVKLPTPATSTHPAGVDTLEILEVTY 178
>gi|307706015|ref|ZP_07642838.1| transcription elongation factor greA [Streptococcus mitis SK564]
gi|307620434|gb|EFN99547.1| transcription elongation factor greA [Streptococcus mitis SK564]
Length = 160
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ +++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDSVADDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD ++ P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157
>gi|330998037|ref|ZP_08321868.1| transcription elongation factor GreA [Paraprevotella xylaniphila
YIT 11841]
gi|329569338|gb|EGG51118.1| transcription elongation factor GreA [Paraprevotella xylaniphila
YIT 11841]
Length = 155
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 54/152 (35%), Positives = 92/152 (60%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ +L+ + ERP AI+EAR GDLSEN+EY AAKE Q + E ++ +
Sbjct: 3 YMSQEGYDKLVAQLKEMETIERPAASAAIAEARDKGDLSENSEYDAAKEHQAMLEMKINQ 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I A++ID S + D + + V + + K Y IV + EA+++ G +S+ +P
Sbjct: 63 LKAVIGDAKIIDTSKLKADTVQILSKVEMRNVKNNMKMTYTIVSETEANLKEGKISVQTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++GD+ + P G EI + +
Sbjct: 123 IAQGLLGKKVGDVAEIKIPHGTVQLEITNISF 154
>gi|309798572|ref|ZP_07692847.1| transcription elongation factor GreA [Streptococcus infantis
SK1302]
gi|308117808|gb|EFO55209.1| transcription elongation factor GreA [Streptococcus infantis
SK1302]
Length = 160
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ D +A G TV++ E D++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDDEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD ++ P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157
>gi|187933763|ref|YP_001884424.1| transcription elongation factor GreA [Clostridium botulinum B str.
Eklund 17B]
gi|238691601|sp|B2TI25|GREA_CLOBB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|187721916|gb|ACD23137.1| transcription elongation factor GreA [Clostridium botulinum B str.
Eklund 17B]
Length = 160
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 89/154 (57%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ +T +G K++ EL + + +R I + I A YGDLSEN+EY AK Q EG+
Sbjct: 5 KQYVMTYEGVKKLEGELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAFTEGK 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +LEN + A V+D S + D ++ G+ V + + + ++ Y IVG EAD S +S
Sbjct: 65 ILQLENKLKNAVVVDESEIPKDIVSVGSKVKVKDYDFDEEVEYSIVGSAEADPMSFKISN 124
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ AL+GK++GD++ V P G +EIL +
Sbjct: 125 ESPVGNALVGKKIGDVVEVVVPDGVSKFEILDIK 158
>gi|294507431|ref|YP_003571489.1| transcription elongation factor greA [Salinibacter ruber M8]
gi|294343759|emb|CBH24537.1| Transcription elongation factor greA [Salinibacter ruber M8]
Length = 178
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 97/154 (62%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ + +T +G +++++EL + EER RI I+EARA GDLSENAEY AAKE Q E R
Sbjct: 24 ETVYMTEEGLEELKEELHQLKTEERSRIADEIAEARAKGDLSENAEYDAAKEEQGKLEAR 83
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ++E+ I RA ++D ST+ + + V++ ++GD++ + +V ++EA++ +S+
Sbjct: 84 IKQIEDTIARARIVDESTVDDSKAYILSDVTVENLDTGDEQTFTLVSEEEANISENKISV 143
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPI L+ +E GD +S++ P G ++I +
Sbjct: 144 DSPIGEGLLAQEEGDEVSIDVPAGTVHFKIKDIS 177
>gi|182418041|ref|ZP_02949346.1| transcription elongation factor GreA [Clostridium butyricum 5521]
gi|237666078|ref|ZP_04526066.1| GreA/GreB family elongation factor [Clostridium butyricum E4 str.
BoNT E BL5262]
gi|182378096|gb|EDT75632.1| transcription elongation factor GreA [Clostridium butyricum 5521]
gi|237659025|gb|EEP56577.1| GreA/GreB family elongation factor [Clostridium butyricum E4 str.
BoNT E BL5262]
Length = 154
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 81/150 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+Q EL +R +R I K A A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTQENMKKLQDELEYRMTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+I+ A VID + + + + +++ +V + D ++ ++SI S +
Sbjct: 65 MTMISTATVIDDEDQDKSVLGINSKAKVKFIDDDEEEIITLVTTMDLDPENMMISIESDL 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ALIGK+ G+I+ V APG + + EIL++L
Sbjct: 125 GKALIGKKAGEIVEVEAPGDKYSVEILEIL 154
>gi|50842047|ref|YP_055274.1| transcription elongation factor GreA [Propionibacterium acnes
KPA171202]
gi|289425793|ref|ZP_06427547.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Propionibacterium acnes SK187]
gi|289426784|ref|ZP_06428512.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Propionibacterium acnes J165]
gi|295130130|ref|YP_003580793.1| transcription elongation factor GreA [Propionibacterium acnes
SK137]
gi|50839649|gb|AAT82316.1| transcription elongation factor GreA [Propionibacterium acnes
KPA171202]
gi|289153736|gb|EFD02443.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Propionibacterium acnes SK187]
gi|289160110|gb|EFD08286.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Propionibacterium acnes J165]
gi|291375127|gb|ADD98981.1| transcription elongation factor GreA [Propionibacterium acnes
SK137]
gi|313764010|gb|EFS35374.1| transcription elongation factor GreA [Propionibacterium acnes
HL013PA1]
gi|313771459|gb|EFS37425.1| transcription elongation factor GreA [Propionibacterium acnes
HL074PA1]
gi|313791667|gb|EFS39785.1| transcription elongation factor GreA [Propionibacterium acnes
HL110PA1]
gi|313802247|gb|EFS43473.1| transcription elongation factor GreA [Propionibacterium acnes
HL110PA2]
gi|313808119|gb|EFS46593.1| transcription elongation factor GreA [Propionibacterium acnes
HL087PA2]
gi|313811414|gb|EFS49128.1| transcription elongation factor GreA [Propionibacterium acnes
HL083PA1]
gi|313812597|gb|EFS50311.1| transcription elongation factor GreA [Propionibacterium acnes
HL025PA1]
gi|313814863|gb|EFS52577.1| transcription elongation factor GreA [Propionibacterium acnes
HL059PA1]
gi|313818886|gb|EFS56600.1| transcription elongation factor GreA [Propionibacterium acnes
HL046PA2]
gi|313820713|gb|EFS58427.1| transcription elongation factor GreA [Propionibacterium acnes
HL036PA1]
gi|313822520|gb|EFS60234.1| transcription elongation factor GreA [Propionibacterium acnes
HL036PA2]
gi|313825684|gb|EFS63398.1| transcription elongation factor GreA [Propionibacterium acnes
HL063PA1]
gi|313828026|gb|EFS65740.1| transcription elongation factor GreA [Propionibacterium acnes
HL063PA2]
gi|313830831|gb|EFS68545.1| transcription elongation factor GreA [Propionibacterium acnes
HL007PA1]
gi|313833259|gb|EFS70973.1| transcription elongation factor GreA [Propionibacterium acnes
HL056PA1]
gi|313839015|gb|EFS76729.1| transcription elongation factor GreA [Propionibacterium acnes
HL086PA1]
gi|314915042|gb|EFS78873.1| transcription elongation factor GreA [Propionibacterium acnes
HL005PA4]
gi|314918627|gb|EFS82458.1| transcription elongation factor GreA [Propionibacterium acnes
HL050PA1]
gi|314920435|gb|EFS84266.1| transcription elongation factor GreA [Propionibacterium acnes
HL050PA3]
gi|314925628|gb|EFS89459.1| transcription elongation factor GreA [Propionibacterium acnes
HL036PA3]
gi|314932109|gb|EFS95940.1| transcription elongation factor GreA [Propionibacterium acnes
HL067PA1]
gi|314954625|gb|EFS99031.1| transcription elongation factor GreA [Propionibacterium acnes
HL027PA1]
gi|314958576|gb|EFT02678.1| transcription elongation factor GreA [Propionibacterium acnes
HL002PA1]
gi|314959820|gb|EFT03922.1| transcription elongation factor GreA [Propionibacterium acnes
HL002PA2]
gi|314962393|gb|EFT06494.1| transcription elongation factor GreA [Propionibacterium acnes
HL082PA1]
gi|314968336|gb|EFT12435.1| transcription elongation factor GreA [Propionibacterium acnes
HL037PA1]
gi|314973719|gb|EFT17815.1| transcription elongation factor GreA [Propionibacterium acnes
HL053PA1]
gi|314976366|gb|EFT20461.1| transcription elongation factor GreA [Propionibacterium acnes
HL045PA1]
gi|314979203|gb|EFT23297.1| transcription elongation factor GreA [Propionibacterium acnes
HL072PA2]
gi|314983351|gb|EFT27443.1| transcription elongation factor GreA [Propionibacterium acnes
HL005PA1]
gi|314986758|gb|EFT30850.1| transcription elongation factor GreA [Propionibacterium acnes
HL005PA2]
gi|314989499|gb|EFT33590.1| transcription elongation factor GreA [Propionibacterium acnes
HL005PA3]
gi|315077480|gb|EFT49540.1| transcription elongation factor GreA [Propionibacterium acnes
HL053PA2]
gi|315080223|gb|EFT52199.1| transcription elongation factor GreA [Propionibacterium acnes
HL078PA1]
gi|315084105|gb|EFT56081.1| transcription elongation factor GreA [Propionibacterium acnes
HL027PA2]
gi|315085307|gb|EFT57283.1| transcription elongation factor GreA [Propionibacterium acnes
HL002PA3]
gi|315089078|gb|EFT61054.1| transcription elongation factor GreA [Propionibacterium acnes
HL072PA1]
gi|315096494|gb|EFT68470.1| transcription elongation factor GreA [Propionibacterium acnes
HL038PA1]
gi|315098901|gb|EFT70877.1| transcription elongation factor GreA [Propionibacterium acnes
HL059PA2]
gi|315100859|gb|EFT72835.1| transcription elongation factor GreA [Propionibacterium acnes
HL046PA1]
gi|315107203|gb|EFT79179.1| transcription elongation factor GreA [Propionibacterium acnes
HL030PA1]
gi|315108077|gb|EFT80053.1| transcription elongation factor GreA [Propionibacterium acnes
HL030PA2]
gi|327326744|gb|EGE68527.1| transcription elongation factor GreA [Propionibacterium acnes
HL096PA2]
gi|327330559|gb|EGE72306.1| transcription elongation factor GreA [Propionibacterium acnes
HL096PA3]
gi|327331070|gb|EGE72810.1| transcription elongation factor GreA [Propionibacterium acnes
HL097PA1]
gi|327443055|gb|EGE89709.1| transcription elongation factor GreA [Propionibacterium acnes
HL043PA1]
gi|327445178|gb|EGE91832.1| transcription elongation factor GreA [Propionibacterium acnes
HL043PA2]
gi|327446896|gb|EGE93550.1| transcription elongation factor GreA [Propionibacterium acnes
HL013PA2]
gi|327450159|gb|EGE96813.1| transcription elongation factor GreA [Propionibacterium acnes
HL087PA3]
gi|327455114|gb|EGF01769.1| transcription elongation factor GreA [Propionibacterium acnes
HL092PA1]
gi|327455284|gb|EGF01939.1| transcription elongation factor GreA [Propionibacterium acnes
HL083PA2]
gi|328752572|gb|EGF66188.1| transcription elongation factor GreA [Propionibacterium acnes
HL020PA1]
gi|328752825|gb|EGF66441.1| transcription elongation factor GreA [Propionibacterium acnes
HL087PA1]
gi|328759252|gb|EGF72868.1| transcription elongation factor GreA [Propionibacterium acnes
HL025PA2]
gi|328760261|gb|EGF73834.1| transcription elongation factor GreA [Propionibacterium acnes
HL099PA1]
gi|332674970|gb|AEE71786.1| transcription elongation factor GreA [Propionibacterium acnes 266]
Length = 168
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 7/160 (4%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + +T + FDK+ QEL + + E R I I++AR+ GDLSEN Y AA+E Q E R
Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGEGRTAIANKIADARSEGDLSENGGYHAAREEQGQAEAR 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117
+ +LE ++ AEV + + S D + G+ V++ + + ++G ++ V
Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTVCYFDDESDTDTFLLGSRQVMGLDDSVNV 124
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+ S SP+ A++G G+ AP G+ IL V
Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYQAPNGKTIKVTILNVE 164
>gi|313890846|ref|ZP_07824470.1| transcription elongation factor GreA [Streptococcus pseudoporcinus
SPIN 20026]
gi|313120744|gb|EFR43859.1| transcription elongation factor GreA [Streptococcus pseudoporcinus
SPIN 20026]
Length = 160
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +++++EL + RP +++ I AR+YGDLSEN+EY AAK+ Q
Sbjct: 1 MAEKTYPMTELEKEQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG
Sbjct: 61 EGQISTLETKIRFAEIIDSDAVAKDEVAIGKTVVVQEVGTNDKDTYHIVGSAGADIFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK+ GD + +P EI+ V
Sbjct: 121 ISNESPIAQALIGKKKGDKAQIVSPATTYEVEIVSVE 157
>gi|217976361|ref|YP_002360508.1| transcription elongation factor GreB [Methylocella silvestris BL2]
gi|217501737|gb|ACK49146.1| transcription elongation factor GreB [Methylocella silvestris BL2]
Length = 181
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T +G ++Q E + ERP+I++ ++ A GD SEN +Y K + RM
Sbjct: 28 KNYITPEGLRRMQDEFDRLHRIERPKIVETVTWAAGNGDRSENGDYIYGKRRLREIDRRM 87
Query: 64 AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D + + DR+ FGA V + + K +IVG EA + VS
Sbjct: 88 RFLRKRMEIAEVVDPARQTNRDRVFFGAKVEYRNARN-EMKTLRIVGVDEARSELSEVSW 146
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIA++L+ E GD++ V P G + EI+++ +
Sbjct: 147 ISPIAKSLLKAEEGDVVEVKTPKGTERIEIVKISY 181
>gi|195978755|ref|YP_002123999.1| transcription elongation factor GreA [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225867928|ref|YP_002743876.1| transcription elongation factor [Streptococcus equi subsp.
zooepidemicus]
gi|225871158|ref|YP_002747105.1| transcription elongation factor [Streptococcus equi subsp. equi
4047]
gi|195975460|gb|ACG62986.1| transcription elongation factor GreA [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|225700562|emb|CAW95060.1| transcription elongation factor [Streptococcus equi subsp. equi
4047]
gi|225701204|emb|CAW98132.1| transcription elongation factor [Streptococcus equi subsp.
zooepidemicus]
Length = 176
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 1/156 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T+ +++++EL + RP +++ I AR+YGDLSEN+EY AAK+ Q
Sbjct: 17 MAEKTYPMTAAEKEQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 76
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+ID ++ D +A G TV + E + Y IVG AD+ SG
Sbjct: 77 EGQISTLETKIRYAEIIDSDAVAKDEVAIGKTVVVQEVGTQTTDTYHIVGAAGADIFSGK 136
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SPIA+ALIGK+ GD + + +P I+ V
Sbjct: 137 ISNESPIAQALIGKKTGDKVKIESPAATYEVTIISV 172
>gi|116516490|ref|YP_816807.1| transcription elongation factor GreA [Streptococcus pneumoniae D39]
gi|148984861|ref|ZP_01818114.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP3-BS71]
gi|148992595|ref|ZP_01822263.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP9-BS68]
gi|148997422|ref|ZP_01825027.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP11-BS70]
gi|149003267|ref|ZP_01828163.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP14-BS69]
gi|149007576|ref|ZP_01831211.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP18-BS74]
gi|149011752|ref|ZP_01832948.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP19-BS75]
gi|149021786|ref|ZP_01835793.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP23-BS72]
gi|168484934|ref|ZP_02709879.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC1873-00]
gi|168487712|ref|ZP_02712220.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC1087-00]
gi|168488822|ref|ZP_02713021.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae SP195]
gi|168491591|ref|ZP_02715734.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC0288-04]
gi|168493418|ref|ZP_02717561.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC3059-06]
gi|168577325|ref|ZP_02723096.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae MLV-016]
gi|194397327|ref|YP_002038148.1| transcription elongation factor GreA [Streptococcus pneumoniae G54]
gi|221232229|ref|YP_002511382.1| transcription elongation factor [Streptococcus pneumoniae ATCC
700669]
gi|225854961|ref|YP_002736473.1| transcription elongation factor GreA [Streptococcus pneumoniae JJA]
gi|225857142|ref|YP_002738653.1| transcription elongation factor GreA [Streptococcus pneumoniae
P1031]
gi|225859274|ref|YP_002740784.1| transcription elongation factor GreA [Streptococcus pneumoniae
70585]
gi|225861350|ref|YP_002742859.1| transcription elongation factor GreA [Streptococcus pneumoniae
Taiwan19F-14]
gi|237650199|ref|ZP_04524451.1| transcription elongation factor GreA [Streptococcus pneumoniae CCRI
1974]
gi|237820918|ref|ZP_04596763.1| transcription elongation factor GreA [Streptococcus pneumoniae CCRI
1974M2]
gi|298230257|ref|ZP_06963938.1| transcription elongation factor GreA [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298254453|ref|ZP_06978039.1| transcription elongation factor GreA [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298503253|ref|YP_003725193.1| transcription elongation factor GreA [Streptococcus pneumoniae
TCH8431/19A]
gi|303255302|ref|ZP_07341372.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS455]
gi|303260142|ref|ZP_07346114.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP-BS293]
gi|303262532|ref|ZP_07348473.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP14-BS292]
gi|303264934|ref|ZP_07350849.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS397]
gi|303267244|ref|ZP_07353108.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS457]
gi|303269554|ref|ZP_07355317.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS458]
gi|307068161|ref|YP_003877127.1| transcription elongation factor [Streptococcus pneumoniae AP200]
gi|307127722|ref|YP_003879753.1| transcription elongation factor GreA [Streptococcus pneumoniae
670-6B]
gi|73621019|sp|Q8DP42|GREA_STRR6 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|122277695|sp|Q04HS9|GREA_STRP2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238690838|sp|B5E681|GREA_STRP4 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799568|sp|C1C8A8|GREA_STRP7 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799569|sp|B8ZLB8|GREA_STRPJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799571|sp|C1CFA2|GREA_STRZJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799572|sp|C1CLL5|GREA_STRZP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799573|sp|C1CSD7|GREA_STRZT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|116077066|gb|ABJ54786.1| transcription elongation factor GreA [Streptococcus pneumoniae D39]
gi|147756477|gb|EDK63518.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP11-BS70]
gi|147758727|gb|EDK65724.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP14-BS69]
gi|147760935|gb|EDK67905.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP18-BS74]
gi|147764183|gb|EDK71115.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP19-BS75]
gi|147922883|gb|EDK73999.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP3-BS71]
gi|147928612|gb|EDK79626.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP9-BS68]
gi|147930022|gb|EDK81009.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP23-BS72]
gi|172041918|gb|EDT49964.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC1873-00]
gi|183569530|gb|EDT90058.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC1087-00]
gi|183572632|gb|EDT93160.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae SP195]
gi|183574144|gb|EDT94672.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC0288-04]
gi|183576363|gb|EDT96891.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae CDC3059-06]
gi|183577158|gb|EDT97686.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae MLV-016]
gi|194356994|gb|ACF55442.1| transcription elongation factor GreA [Streptococcus pneumoniae G54]
gi|220674690|emb|CAR69263.1| transcription elongation factor [Streptococcus pneumoniae ATCC
700669]
gi|225720296|gb|ACO16150.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae 70585]
gi|225722497|gb|ACO18350.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae JJA]
gi|225724300|gb|ACO20152.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae P1031]
gi|225726751|gb|ACO22602.1| transcription elongation factor GreA (Transcript cleavage factor
greA)(General stress protein 20M) (GSP20M)
[Streptococcus pneumoniae Taiwan19F-14]
gi|298238848|gb|ADI69979.1| transcription elongation factor GreA [Streptococcus pneumoniae
TCH8431/19A]
gi|301794529|emb|CBW36971.1| transcription elongation factor [Streptococcus pneumoniae INV104]
gi|301800352|emb|CBW32982.1| transcription elongation factor [Streptococcus pneumoniae OXC141]
gi|301802237|emb|CBW34988.1| transcription elongation factor [Streptococcus pneumoniae INV200]
gi|302597670|gb|EFL64746.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS455]
gi|302636249|gb|EFL66743.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP14-BS292]
gi|302638639|gb|EFL69102.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP-BS293]
gi|302640898|gb|EFL71282.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS458]
gi|302643209|gb|EFL73492.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS457]
gi|302645453|gb|EFL75685.1| transcription elongation factor GreA [Streptococcus pneumoniae
BS397]
gi|306409698|gb|ADM85125.1| Transcription elongation factor [Streptococcus pneumoniae AP200]
gi|306484784|gb|ADM91653.1| transcription elongation factor GreA [Streptococcus pneumoniae
670-6B]
gi|327389702|gb|EGE88047.1| transcription elongation factor GreA domain protein [Streptococcus
pneumoniae GA04375]
gi|332072310|gb|EGI82793.1| transcription elongation factor GreA domain protein [Streptococcus
pneumoniae GA17570]
gi|332073853|gb|EGI84331.1| transcription elongation factor GreA domain protein [Streptococcus
pneumoniae GA41301]
gi|332074270|gb|EGI84747.1| transcription elongation factor GreA domain protein [Streptococcus
pneumoniae GA17545]
gi|332199561|gb|EGJ13636.1| transcription elongation factor GreA domain protein [Streptococcus
pneumoniae GA41317]
gi|332200079|gb|EGJ14152.1| transcription elongation factor GreA domain protein [Streptococcus
pneumoniae GA47368]
gi|332200957|gb|EGJ15028.1| transcription elongation factor GreA domain protein [Streptococcus
pneumoniae GA47901]
Length = 160
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD ++ P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157
>gi|227529977|ref|ZP_03960026.1| transcription elongation factor GreA [Lactobacillus vaginalis ATCC
49540]
gi|227350100|gb|EEJ40391.1| transcription elongation factor GreA [Lactobacillus vaginalis ATCC
49540]
Length = 172
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 56/151 (37%), Positives = 81/151 (53%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+ +I+QE+ Q +RP I + ARA GDLSEN EY AK E R+
Sbjct: 17 KMTPTGYHEIEQEIEKLQA-QRPAKIAQLKAARALGDLSENTEYSTAKRELRHLESRLRY 75
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + AE+I + I G TV+L + ++ NY IVG QEAD+Q +S SP
Sbjct: 76 LNKQLQYAEIIKPT--DSQTIDLGTTVTLQFIDDDEQVNYTIVGKQEADLQKQKISFDSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +AL+ +++G +SV AP +IL V
Sbjct: 134 LGQALLHQKVGQTVSVQAPQSTYQVKILAVR 164
>gi|25453004|sp|Q98Q16|GREA_MYCPU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
Length = 157
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 3/153 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI +T + K ++E ERP +I I EAR GDLSENAEY AA+E Q E R
Sbjct: 5 NKIYLTQETIKKYEEEKWHLINVERPAVILEIKEARQQGDLSENAEYDAAREKQGQIEDR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELENI++ A I I D+I G+ V ++ +++G ++ ++IVG + D +S
Sbjct: 65 ITELENILSNA--ISIQESHSDKIGLGSVVRILNQSTGKERTFKIVGSFDTDPTQNKISY 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+A+++IG GD++ ++AP + T +IL V
Sbjct: 123 ESPLAKSIIGFSKGDVVEIDAPD-KYTTKILSV 154
>gi|289643503|ref|ZP_06475621.1| transcription elongation factor GreA [Frankia symbiont of Datisca
glomerata]
gi|289506687|gb|EFD27668.1| transcription elongation factor GreA [Frankia symbiont of Datisca
glomerata]
Length = 160
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T + +D++++EL R I I AR GDL EN Y AAKE Q E
Sbjct: 1 MSQQTWLTQEAYDRLREELDHLTGTGRVEIANKIEAAREEGDLKENGGYHAAKEEQGKLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +L +++ A V G G V + + + + I ++ +
Sbjct: 61 SRIRQLTDLLRDARVGQAPQFDG-AAGPGTVVEVRFPGDDETERFLIGSREDHSTSLEVY 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
S SP+ A+ G GD ++ P G T I+ V
Sbjct: 120 SAQSPLGGAVSGHRAGDTVTYTLPNGRSATVRIVTVE 156
>gi|223986210|ref|ZP_03636228.1| hypothetical protein HOLDEFILI_03538 [Holdemania filiformis DSM
12042]
gi|223961824|gb|EEF66318.1| hypothetical protein HOLDEFILI_03538 [Holdemania filiformis DSM
12042]
Length = 156
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 1/154 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
DKI VT +G +++++E R +I+ + ARA GDLSENA+Y AA++ Q E R
Sbjct: 4 DKIYVTQEGLEELKKEQENLIHVVRQEVIEDLKAARAQGDLSENADYDAARDRQAQVEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE ++ E+ID S G+TV + E ++ + IVG EAD +G +S
Sbjct: 64 IRELEVMLNNIEIIDDKQGSVRVAKIGSTVKIEELDTHQIDEFTIVGSVEADPLNGKLSN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+P+A A++ ++G + V +IL++
Sbjct: 124 VTPLAEAILEHKVGQTVEVLV-DEPYQVKILEIR 156
>gi|257457224|ref|ZP_05622399.1| transcript cleavage factor/unknown domain fusion protein [Treponema
vincentii ATCC 35580]
gi|257445375|gb|EEV20443.1| transcript cleavage factor/unknown domain fusion protein [Treponema
vincentii ATCC 35580]
Length = 892
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 55/150 (36%), Positives = 92/150 (61%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VTSK ++ ++EL+ + E PR K + A + GDL EN+EY+AAKE QN ++ L
Sbjct: 739 VTSKMLEEKKKELQRLIEVEIPRNSKEVGFALSLGDLRENSEYKAAKEEQNRLNNTVSRL 798
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + RA+V D +T++ R+ FG V+L + S +K+ Y I+G E+D ++G++S SP+
Sbjct: 799 QEELERAQVFDPTTITTTRVGFGTVVTLEKPGSNEKETYTILGPWESDPENGVISYMSPL 858
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
L+ ++G+ +S EKTY+IL +
Sbjct: 859 GTNLLNHKVGETLSFTVNEEEKTYKILDIS 888
>gi|15903412|ref|NP_358962.1| transcription elongation factor GreA [Streptococcus pneumoniae R6]
gi|182684472|ref|YP_001836219.1| transcription elongation factor GreA [Streptococcus pneumoniae
CGSP14]
gi|15459017|gb|AAL00173.1| Transcription elongation factor GreA [Streptococcus pneumoniae R6]
gi|182629806|gb|ACB90754.1| transcription elongation factor GreA [Streptococcus pneumoniae
CGSP14]
Length = 163
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 4 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 63
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 64 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 123
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD ++ P G +IL+V
Sbjct: 124 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 160
>gi|307565015|ref|ZP_07627532.1| putative transcription elongation factor GreA [Prevotella amnii
CRIS 21A-A]
gi|307346328|gb|EFN91648.1| putative transcription elongation factor GreA [Prevotella amnii
CRIS 21A-A]
Length = 156
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 92/151 (60%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ ++L+ + ERP+ AI+EA GDLSEN+EY AAKE Q E ++ E
Sbjct: 3 YMSQEGYDKLVEDLKQLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEAKILE 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ + A+++D S +S + + +TV + ++ K Y IV + EA+++ G +SI +P
Sbjct: 63 MKKTLAEAKIVDTSRLSTEAVQILSTVEMTNIDNQTKMTYTIVSETEANIKQGKISIKTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ K++GDI + P G I ++
Sbjct: 123 IAQGLLNKKVGDIAEITIPRGTIKLRIDKIS 153
>gi|222152570|ref|YP_002561745.1| transcription elongation factor GreA [Streptococcus uberis 0140J]
gi|254799570|sp|B9DTR1|GREA_STRU0 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|222113381|emb|CAR41021.1| transcription elongation factor [Streptococcus uberis 0140J]
Length = 160
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +++++EL + RP +++ I AR+YGDLSEN+EY AAK+ Q
Sbjct: 1 MAEKTYPMTKAEKEQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG
Sbjct: 61 EGQISTLETQIRFAEIIDSDAVAKDEVAIGKTVVVQEVGTTDKDTYHIVGSAGADIFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK+ GDI + +P EI+ V
Sbjct: 121 ISNESPIAQALIGKKKGDIADIVSPATTYQVEIISVE 157
>gi|320335243|ref|YP_004171954.1| transcription elongation factor GreA [Deinococcus maricopensis DSM
21211]
gi|319756532|gb|ADV68289.1| transcription elongation factor GreA [Deinococcus maricopensis DSM
21211]
Length = 156
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 54/155 (34%), Positives = 96/155 (61%), Gaps = 3/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI +T KG+DK+++ L + Q R +I + + A A GD+ E+A Y A+ Q+ NE R
Sbjct: 4 EKITMTRKGYDKLRETLEYLQTTRREQISEYMGSALADGDIRESAAYDEARMQQSENEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE+ ++RA++++ + +G I GA V + + G++++ +IVG EAD G +S
Sbjct: 64 ILELEDQLSRAQIVEEGSQTG--IGLGAKVRVKDAK-GNERDIEIVGTYEADALKGKISD 120
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ +AL G GD++ VN P G++ + ++ V +
Sbjct: 121 HSPLGQALAGHGTGDMVVVNLPKGQQKFTVISVKY 155
>gi|295106038|emb|CBL03581.1| transcription elongation factor GreA [Gordonibacter pamelaeae
7-10-1-b]
Length = 156
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 4/156 (2%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D +T +G DK+++EL + + E+R I + I AR +GD+SEN+EY AK Q + E R
Sbjct: 4 DNFILTQEGKDKLEEELHYLETEKRAEIGERIKVAREFGDISENSEYDDAKNEQGMMEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+AE+ I++ A V++ S ++ G+ V++ G ++ + IVG E+D +G +S
Sbjct: 64 IAEISRILSEATVVNTPKRS-SKVNIGSMVTV--DMGGKERVFTIVGGAESDAAAGKISN 120
Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
SP+ AL+G + GD + P G + + IL++
Sbjct: 121 ESPVGAALLGHKKGDKVETTGPTGRDISMVILKIEH 156
>gi|294631104|ref|ZP_06709664.1| transcription elongation factor GreA [Streptomyces sp. e14]
gi|292834437|gb|EFF92786.1| transcription elongation factor GreA [Streptomyces sp. e14]
Length = 166
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNKLKDELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + + +A G V++ + + D + + + A S S
Sbjct: 70 LTQLLENAKVGEAPASTDGAVAPGMVVTIAFDGDEDDTLTFLLASREYASSDIETYSPQS 129
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
P+ +IG ++G+ P G+K + IL+
Sbjct: 130 PLGSGVIGHKVGEDAEYELPNGKKASVTILK 160
>gi|282859825|ref|ZP_06268919.1| putative transcription elongation factor GreA [Prevotella bivia
JCVIHMP010]
gi|282587445|gb|EFB92656.1| putative transcription elongation factor GreA [Prevotella bivia
JCVIHMP010]
Length = 156
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 92/151 (60%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ ++L+ + ERP+ AI+EA GDLSEN+EY AAKE Q E ++ E
Sbjct: 3 YMSQEGYDKLVEDLKQLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEAKILE 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ + A+++D S +S D + +TV + ++ K Y IV + EA+++ G +SI +P
Sbjct: 63 MKMTLAEAKIVDTSRLSTDAVQIMSTVEMTNVDNQTKMKYTIVSETEANIKQGKISIKTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ K++GD+ + P G I ++
Sbjct: 123 IAQGLLNKKVGDVAEITIPRGTIKLRIDKIS 153
>gi|255281437|ref|ZP_05345992.1| transcription elongation factor GreA [Bryantella formatexigens DSM
14469]
gi|255267925|gb|EET61130.1| transcription elongation factor GreA [Bryantella formatexigens DSM
14469]
Length = 159
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 81/154 (52%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K +T G ++ E+ + R + I EAR GDLSENAEY AAK+ Q E R
Sbjct: 4 KKNLLTYSGLKALEDEMHDLKVVRRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+E I+ AEV+ + ++I G TV L ++ ++ YQIVG EA+ G +S
Sbjct: 64 IEEIEKILKNAEVVVEDDVDLNKINVGCTVKLFDEEYEEEIEYQIVGSTEANSLMGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +ALIG +G I V G Y +L +
Sbjct: 124 ESPVGKALIGASIGQEIEVETQVGVCKYRVLGIQ 157
>gi|125718595|ref|YP_001035728.1| transcription elongation factor GreA [Streptococcus sanguinis SK36]
gi|323351003|ref|ZP_08086660.1| transcription elongation factor GreA [Streptococcus sanguinis
VMC66]
gi|166200977|sp|A3CPS3|GREA_STRSV RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|125498512|gb|ABN45178.1| Transcription elongation factor GreA, putative [Streptococcus
sanguinis SK36]
gi|322122727|gb|EFX94436.1| transcription elongation factor GreA [Streptococcus sanguinis
VMC66]
gi|324991292|gb|EGC23225.1| transcription elongation factor GreA [Streptococcus sanguinis
SK353]
gi|324993649|gb|EGC25568.1| transcription elongation factor GreA [Streptococcus sanguinis
SK405]
gi|324995039|gb|EGC26952.1| transcription elongation factor GreA [Streptococcus sanguinis
SK678]
gi|325687131|gb|EGD29154.1| transcription elongation factor GreA [Streptococcus sanguinis SK72]
gi|325690939|gb|EGD32939.1| transcription elongation factor GreA [Streptococcus sanguinis
SK115]
gi|325695125|gb|EGD37027.1| transcription elongation factor GreA [Streptococcus sanguinis
SK150]
gi|327462918|gb|EGF09239.1| transcription elongation factor GreA [Streptococcus sanguinis SK1]
gi|327470408|gb|EGF15864.1| transcription elongation factor GreA [Streptococcus sanguinis
SK330]
gi|327474522|gb|EGF19927.1| transcription elongation factor GreA [Streptococcus sanguinis
SK408]
gi|327490078|gb|EGF21866.1| transcription elongation factor GreA [Streptococcus sanguinis
SK1058]
gi|332359138|gb|EGJ36959.1| transcription elongation factor GreA [Streptococcus sanguinis SK49]
gi|332367391|gb|EGJ45124.1| transcription elongation factor GreA [Streptococcus sanguinis
SK1059]
Length = 160
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAKDEVAIGKTVTIQEVGESEEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD +V P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKILKVE 157
>gi|260910637|ref|ZP_05917297.1| transcription elongation factor GreA [Prevotella sp. oral taxon 472
str. F0295]
gi|260635237|gb|EEX53267.1| transcription elongation factor GreA [Prevotella sp. oral taxon 472
str. F0295]
Length = 154
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 91/151 (60%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G++K+ ELR + ERP+ AI++AR GDLSEN+EY AAKE Q E ++ +
Sbjct: 3 YMSQEGYEKLVAELRRLESIERPKASAAIADARDKGDLSENSEYDAAKEAQAHLEDKINK 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I A+++D S +S D + + V + + K +Y IV + EA+++ G ++I++P
Sbjct: 63 LKVAINEAKIVDTSRLSTDAVQILSKVDMTNLTTKAKMSYTIVSESEANLKEGKIAITTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ K+ GD + + P G I ++
Sbjct: 123 IAQGLLNKKEGDEVEITIPRGTIKLRIDKIT 153
>gi|323465752|gb|ADX69439.1| Transcription elongation factor [Lactobacillus helveticus H10]
Length = 153
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK +
Sbjct: 1 MVYFQKMTPEGYKQIEDEIVRLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + AE++ T ++ +G TV L + + + Y+IVG EAD+ G +
Sbjct: 60 SRLRYLGKQLKYAEIV--KTTDDGKVDWGKTVVLKFDDDDETEEYKIVGHMEADLADGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +A++ +E G + +V AP GE I++V
Sbjct: 118 SFDSPLGQAIMKQEAGGVATVEAPAGEYKVTIVEVK 153
>gi|251781820|ref|YP_002996122.1| transcription elongation factor GreA [Streptococcus dysgalactiae
subsp. equisimilis GGS_124]
gi|242390449|dbj|BAH80908.1| transcription elongation factor [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|322411166|gb|EFY02074.1| transcription elongation factor GreA [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
gi|323126633|gb|ADX23930.1| transcription elongation factor GreA [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
Length = 160
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +++++EL + RP +++ I AR+YGDLSEN+EY AAK+ Q
Sbjct: 1 MAEKTYPMTLTEKEQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG
Sbjct: 61 EGQISTLETKIRYAEIIDSDAVAKDEVAIGKTVVVQEVGTTDKDTYHIVGAAGADIFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK+ GD + + +P EI+ V
Sbjct: 121 ISNESPIAQALIGKKTGDKVRIESPAATYDVEIISVE 157
>gi|146319370|ref|YP_001199082.1| transcription elongation factor GreA [Streptococcus suis 05ZYH33]
gi|146321576|ref|YP_001201287.1| transcription elongation factor GreA [Streptococcus suis 98HAH33]
gi|253752398|ref|YP_003025539.1| transcription elongation factor [Streptococcus suis SC84]
gi|253754224|ref|YP_003027365.1| transcription elongation factor [Streptococcus suis P1/7]
gi|253756158|ref|YP_003029298.1| transcription elongation factor [Streptococcus suis BM407]
gi|166200976|sp|A4W3E8|GREA_STRS2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166201074|sp|A4VX43|GREA_STRSY RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|145690176|gb|ABP90682.1| Transcription elongation factor [Streptococcus suis 05ZYH33]
gi|145692382|gb|ABP92887.1| Transcription elongation factor [Streptococcus suis 98HAH33]
gi|251816687|emb|CAZ52328.1| transcription elongation factor [Streptococcus suis SC84]
gi|251818622|emb|CAZ56456.1| transcription elongation factor [Streptococcus suis BM407]
gi|251820470|emb|CAR47194.1| transcription elongation factor [Streptococcus suis P1/7]
gi|319758803|gb|ADV70745.1| transcription elongation factor GreA [Streptococcus suis JS14]
Length = 160
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP I++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEIVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ +E I AE+++ ++ D +A G TV++ E +++ Y IVG ADV +
Sbjct: 61 EGQISTIETKIRYAEIVNSDAVAADEVAIGKTVTVQEVGETEEEVYHIVGAAGADVFANK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI ALIGK+ GD+ ++ P G +IL+V
Sbjct: 121 ISNESPIGHALIGKKTGDVATIETPAGSYDVKILKVE 157
>gi|116333642|ref|YP_795169.1| transcription elongation factor [Lactobacillus brevis ATCC 367]
gi|116098989|gb|ABJ64138.1| transcription elongation factor GreA [Lactobacillus brevis ATCC
367]
Length = 132
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 51/131 (38%), Positives = 83/131 (63%), Gaps = 1/131 (0%)
Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
+RP++I I AR+YGDLSEN+EY++AK+ Q++ E R++ +E ++ A++ID D
Sbjct: 2 VQRPKVIDRIKIARSYGDLSENSEYESAKDEQSMLETRISTVERMLQYAQIIDNDDTDKD 61
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
I G V+ E + + + Y IVG EAD SG +S SPIA+ L+G +G+ ++ P
Sbjct: 62 EITVGKKVTFQE-DDDEPEEYTIVGAAEADPMSGKISNDSPIAKGLLGHRVGETVTFPTP 120
Query: 145 GGEKTYEILQV 155
GG+ T +++ V
Sbjct: 121 GGDMTVKVIAV 131
>gi|223933721|ref|ZP_03625695.1| transcription elongation factor GreA [Streptococcus suis 89/1591]
gi|302024344|ref|ZP_07249555.1| transcription elongation factor GreA [Streptococcus suis 05HAS68]
gi|330833338|ref|YP_004402163.1| transcription elongation factor [Streptococcus suis ST3]
gi|223897602|gb|EEF63989.1| transcription elongation factor GreA [Streptococcus suis 89/1591]
gi|292559001|gb|ADE32002.1| Prokaryotic transcription elongation factor GreA [Streptococcus
suis GZ1]
gi|329307561|gb|AEB81977.1| transcription elongation factor [Streptococcus suis ST3]
Length = 160
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP I++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEIVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ +E I AE+++ ++ D +A G TV++ E +++ Y IVG AD +
Sbjct: 61 EGQISTIETKIRYAEIVNSDAVAADEVAIGKTVTVQEVGETEEEVYHIVGAAGADAFANK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI ALIGK+ GD+ ++ P G +IL+V
Sbjct: 121 ISNESPIGHALIGKKTGDVATIETPAGSYDVKILKVE 157
>gi|313837032|gb|EFS74746.1| transcription elongation factor GreA [Propionibacterium acnes
HL037PA2]
gi|314929380|gb|EFS93211.1| transcription elongation factor GreA [Propionibacterium acnes
HL044PA1]
gi|314971536|gb|EFT15634.1| transcription elongation factor GreA [Propionibacterium acnes
HL037PA3]
gi|328907910|gb|EGG27672.1| transcription elongation factor GreA [Propionibacterium sp. P08]
Length = 168
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 49/160 (30%), Positives = 82/160 (51%), Gaps = 7/160 (4%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + +T + FDK+ QEL + + + R I I++AR+ GDLSEN Y AA+E Q E R
Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGKGRTVIANKIADARSEGDLSENGGYHAAREEQGQAEAR 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117
+ +LE ++ AEV + + S D + G+ V++ + + ++G ++ V
Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTVCYFDDESDTDIFLLGSRQVMGLDDSVDI 124
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+ S SP+ A++G G+ AP G+ IL V
Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYKAPNGKTIKVTILDVE 164
>gi|209542505|ref|YP_002274734.1| transcription elongation factor GreB [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530182|gb|ACI50119.1| transcription elongation factor GreB [Gluconacetobacter
diazotrophicus PAl 5]
Length = 180
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT G ++ EL ++ERPRI+ +S A GD SEN +Y K+ + R+
Sbjct: 22 YVTPAGMAAMRGELNALLRDERPRIVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRF 81
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L I +A V+D + + DR+ FGATV+ V ++ IVG E+D+ +G VS++S
Sbjct: 82 LTRRIEKAIVVDPAAQTRRDRVFFGATVTYV-TEDDTERTVVIVGVDESDLAAGQVSLAS 140
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL+G +GD + + P G + EIL++ +
Sbjct: 141 PVARALLGGRVGDEVRLLTPAGAEMIEILRIAY 173
>gi|139438508|ref|ZP_01772024.1| Hypothetical protein COLAER_01017 [Collinsella aerofaciens ATCC
25986]
gi|133776047|gb|EBA39867.1| Hypothetical protein COLAER_01017 [Collinsella aerofaciens ATCC
25986]
Length = 156
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 4/155 (2%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+I +T++G K+ +EL WR+ + I++ I EARA+GDLSEN+EY AAK+ Q N
Sbjct: 3 ASQIVLTAEGRQKLVEELAWREGDYAKEIVEDIKEARAFGDLSENSEYDAAKDKQAQNAA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AE++ I+ A+V +T ++ G+TVSL++ N G+ +VG E + +S
Sbjct: 63 RIAEIQAILANAQV--AATTGDLTVSIGSTVSLIDPN-GEVMEVTLVGTTETNSLEHKIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155
SP+ A+IG GD + V P G+ + Y I ++
Sbjct: 120 NESPVGHAIIGHGEGDSVEVVTPSGKTRVYTIAKI 154
>gi|15829024|ref|NP_326384.1| transcription elongation factor GreA [Mycoplasma pulmonis UAB CTIP]
gi|14089968|emb|CAC13726.1| TRANSCRIPTION ELONGATION FACTOR GREA (TRANSCRIPT CLEAVAGE FACTOR
GREA) [Mycoplasma pulmonis]
Length = 164
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 3/153 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI +T + K ++E ERP +I I EAR GDLSENAEY AA+E Q E R
Sbjct: 12 NKIYLTQETIKKYEEEKWHLINVERPAVILEIKEARQQGDLSENAEYDAAREKQGQIEDR 71
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELENI++ A I I D+I G+ V ++ +++G ++ ++IVG + D +S
Sbjct: 72 ITELENILSNA--ISIQESHSDKIGLGSVVRILNQSTGKERTFKIVGSFDTDPTQNKISY 129
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+A+++IG GD++ ++AP + T +IL V
Sbjct: 130 ESPLAKSIIGFSKGDVVEIDAPD-KYTTKILSV 161
>gi|293364014|ref|ZP_06610750.1| putative transcription elongation factor GreA [Mycoplasma
alligatoris A21JP2]
gi|292552504|gb|EFF41278.1| putative transcription elongation factor GreA [Mycoplasma
alligatoris A21JP2]
Length = 160
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 58/154 (37%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI + + +K + E ERP + A+ EARA GDLSENAEY AA++ Q EGR
Sbjct: 8 EKIYLAKETLEKYKNEYDHLVNVERPSVQAALKEARAQGDLSENAEYDAARDRQGTIEGR 67
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++ELE I+ RAE+I ST +I G+T++ + +K I+G +A+ +S
Sbjct: 68 ISELEAILDRAEII--STTLDGKIGIGSTITYFSELDKEKHKVTIMGSHDANPFENKISN 125
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+A A++ + GD I V+AP + EIL ++
Sbjct: 126 ESPLAVAMLDAKKGDKIEVDAPV-KYFIEILDIV 158
>gi|260593365|ref|ZP_05858823.1| transcription elongation factor GreA [Prevotella veroralis F0319]
gi|260534641|gb|EEX17258.1| transcription elongation factor GreA [Prevotella veroralis F0319]
Length = 156
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 93/151 (61%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AE
Sbjct: 3 YMSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAE 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ + +A+++D+S +S + + +TV + + K Y IV + EA+++ +SI +P
Sbjct: 63 MKMTVAQAKIVDVSRLSTEAVQIMSTVEMTNVKTKAKMKYTIVSETEANLKQNKISIKTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ K++GD + + P G I ++
Sbjct: 123 IAQGLLNKKVGDEVEITIPRGTIKLRIDKIS 153
>gi|332358236|gb|EGJ36064.1| transcription elongation factor GreA [Streptococcus sanguinis
SK355]
Length = 160
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAKDEVAIGKTVTIQEIGESEEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD +V P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKILKVE 157
>gi|15901363|ref|NP_345967.1| transcription elongation factor GreA [Streptococcus pneumoniae
TIGR4]
gi|111658360|ref|ZP_01409047.1| hypothetical protein SpneT_02000439 [Streptococcus pneumoniae
TIGR4]
gi|148988561|ref|ZP_01819994.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP6-BS73]
gi|25453002|sp|Q97PT2|GREA_STRPN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|14973006|gb|AAK75607.1| transcription elongation factor GreA [Streptococcus pneumoniae
TIGR4]
gi|147925762|gb|EDK76837.1| transcription elongation factor GreA [Streptococcus pneumoniae
SP6-BS73]
Length = 160
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD G
Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFVGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD ++ P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157
>gi|210632436|ref|ZP_03297364.1| hypothetical protein COLSTE_01261 [Collinsella stercoris DSM 13279]
gi|210159531|gb|EEA90502.1| hypothetical protein COLSTE_01261 [Collinsella stercoris DSM 13279]
Length = 156
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 91/156 (58%), Gaps = 4/156 (2%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+I +T++G K+++EL + + E+ I++ I EARA+GDLSENAEY AAKE Q N
Sbjct: 3 ASQIVLTAEGRKKLEEELAYLEGEKAKEIVEHIKEARAFGDLSENAEYDAAKEDQARNAA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AE+ + A+ D S ++ G+ V+LV+ G+ ++ IVG E +V +S
Sbjct: 63 RIAEIRATLANAQ--DAVAGSNMIVSIGSNVTLVDGE-GEASDFTIVGTTETNVLEHKIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
SP+ RA+IG G+ + V G+K Y I ++
Sbjct: 120 NESPVGRAIIGHAEGESVEVVLASGKKRVYTIAKIS 155
>gi|307825791|ref|ZP_07656007.1| GreA/GreB family elongation factor [Methylobacter tundripaludum
SV96]
gi|307733099|gb|EFO03960.1| GreA/GreB family elongation factor [Methylobacter tundripaludum
SV96]
Length = 166
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 79/152 (51%), Gaps = 2/152 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G+ ++ ELR +R + +A+S A A GD SENAEY K+ + R+
Sbjct: 14 YITPEGYQSLEIELRDLWT-KRKEVTQALSAAAAEGDRSENAEYIYRKKELRGIDRRIHY 72
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + ++ DRI F A V+L +G++ Y+IVG E + + +S+ SP
Sbjct: 73 LQKRLPSLNIVSQPPDDQDRIFFSAWVTLEN-EAGEEVTYRIVGADELNPKKHYISLDSP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARAL+ K D +++ E Y ++ + +
Sbjct: 132 LARALLKKTFDDAVAIKNELKETRYTVVDINY 163
>gi|282854471|ref|ZP_06263808.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Propionibacterium acnes J139]
gi|282583924|gb|EFB89304.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Propionibacterium acnes J139]
gi|314922876|gb|EFS86707.1| transcription elongation factor GreA [Propionibacterium acnes
HL001PA1]
gi|314980833|gb|EFT24927.1| transcription elongation factor GreA [Propionibacterium acnes
HL110PA3]
gi|315090280|gb|EFT62256.1| transcription elongation factor GreA [Propionibacterium acnes
HL110PA4]
gi|315103027|gb|EFT75003.1| transcription elongation factor GreA [Propionibacterium acnes
HL050PA2]
Length = 168
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 50/160 (31%), Positives = 82/160 (51%), Gaps = 7/160 (4%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + +T + FDK+ QEL + + E R I I++AR+ GDLSEN Y AA+E Q E R
Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGEGRTVIANKIADARSEGDLSENGGYHAAREEQGQAEAR 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117
+ +LE ++ AEV + + S D + G+ V++ + + ++G ++ V
Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTICYFDDESDTDTFLLGSRQVMGLDDSVNV 124
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+ S SP+ A++G G+ AP G+ IL V
Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYQAPNGKTIKVTILNVE 164
>gi|269114909|ref|YP_003302672.1| transcription elongation factor GreA [Mycoplasma hominis]
gi|268322534|emb|CAX37269.1| Transcription elongation factor greA(Transcript cleavage factor
greA) [Mycoplasma hominis ATCC 23114]
Length = 156
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 56/154 (36%), Positives = 94/154 (61%), Gaps = 3/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI +T + + Q++L++ Q+ RP++I+ I EAR GDLSENAEY +A++ Q E
Sbjct: 6 NKIYLTEESLKQYQEKLKYLQEVARPQVIEEIKEARNQGDLSENAEYDSARDKQAAIENE 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+++I+ E+I + S I G+TV L+ N+ + +IVG +AD + +S
Sbjct: 66 ILEIQHILENVEII--KSTSTHTIRIGSTVKLININTNEISEVKIVGALDADPFNNKISN 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+SP+A AL GK++G +I V AP + +I +L
Sbjct: 124 TSPLAIALNGKKVGQVIEVEAPK-KYKVKIESIL 156
>gi|258592300|emb|CBE68609.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [NC10 bacterium 'Dutch sediment']
Length = 166
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 55/143 (38%), Positives = 86/143 (60%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
D ++QE +E R + K I AR GDL EN EY+ K+ Q + RMA L+ I
Sbjct: 7 LDDLRQEFNKLDREFRQDLPKKIQAARELGDLRENGEYETIKDRQGFVKARMAFLQQRIA 66
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
ID+ + DR+A G+TV L++++SG++ Y +V + D G +S++SPI R+LI
Sbjct: 67 EISKIDLRQIPKDRVALGSTVHLIDEDSGEETVYTLVFPELMDSARGWISVASPIGRSLI 126
Query: 132 GKELGDIISVNAPGGEKTYEILQ 154
GK+ GD + +N PGG K +E+++
Sbjct: 127 GKQAGDRVVMNTPGGTKAFEMMK 149
>gi|239618392|ref|YP_002941714.1| transcription elongation factor GreA [Kosmotoga olearia TBF 19.5.1]
gi|239507223|gb|ACR80710.1| transcription elongation factor GreA [Kosmotoga olearia TBF 19.5.1]
Length = 158
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 3/158 (1%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M K I +T +G++ ++ EL +++ + + I EAR GDLSEN+EY AK Q
Sbjct: 1 MSKKNVIYLTKEGYENLKNELNTLRKKLMYEVAERIKEARELGDLSENSEYDEAKNEQGK 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
+ R+ ELE I+ AE+I+ + GA V L + ++ +IV QEAD+
Sbjct: 61 IDSRIKELEYILDNAEIIE-DDGDNSVVKLGAKVRLRNLKTNEEIEIRIVNSQEADIFEN 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI +A++ + + D + V P G Y+I+ +
Sbjct: 120 KISADSPIGKAVLERSVDDEVVVRTPSGIIKYKIITIS 157
>gi|15674504|ref|NP_268678.1| transcription elongation factor GreA [Streptococcus pyogenes M1
GAS]
gi|19745512|ref|NP_606648.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS8232]
gi|28896516|ref|NP_802866.1| transcription elongation factor GreA [Streptococcus pyogenes SSI-1]
gi|50913667|ref|YP_059639.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS10394]
gi|56808752|ref|ZP_00366470.1| COG0782: Transcription elongation factor [Streptococcus pyogenes
M49 591]
gi|71902951|ref|YP_279754.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS6180]
gi|71910107|ref|YP_281657.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS5005]
gi|94987924|ref|YP_596025.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS9429]
gi|94989799|ref|YP_597899.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS10270]
gi|94991808|ref|YP_599907.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS2096]
gi|209558851|ref|YP_002285323.1| transcription elongation factor GreA [Streptococcus pyogenes NZ131]
gi|306827965|ref|ZP_07461232.1| transcription elongation factor GreA [Streptococcus pyogenes ATCC
10782]
gi|13621606|gb|AAK33399.1| putative transcription elongation factor [Streptococcus pyogenes M1
GAS]
gi|19747630|gb|AAL97147.1| putative transcription elongation factor [Streptococcus pyogenes
MGAS8232]
gi|28811770|dbj|BAC64699.1| putative transcription elongation factor [Streptococcus pyogenes
SSI-1]
gi|50902741|gb|AAT86456.1| Transcription elongation factor [Streptococcus pyogenes MGAS10394]
gi|71802046|gb|AAX71399.1| transcription elongation factor [Streptococcus pyogenes MGAS6180]
gi|71852889|gb|AAZ50912.1| transcription elongation factor [Streptococcus pyogenes MGAS5005]
gi|94541432|gb|ABF31481.1| transcription elongation factor [Streptococcus pyogenes MGAS9429]
gi|94543307|gb|ABF33355.1| Transcription elongation factor greA [Streptococcus pyogenes
MGAS10270]
gi|94545316|gb|ABF35363.1| Transcription elongation factor greA [Streptococcus pyogenes
MGAS2096]
gi|209540052|gb|ACI60628.1| Transcription elongation factor GreA [Streptococcus pyogenes NZ131]
gi|304429884|gb|EFM32926.1| transcription elongation factor GreA [Streptococcus pyogenes ATCC
10782]
Length = 176
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +++++EL + RP I++ I AR+YGDLSEN+EY AAK+ Q
Sbjct: 17 MAEKTYPMTLTEKEQLEKELEELKLVRRPEIVERIKIARSYGDLSENSEYDAAKDEQAFV 76
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG
Sbjct: 77 EGQISTLETKIRYAEIIDSDAVAKDEVAIGKTVIVQEVGTTDKDTYHIVGAAGADIFSGK 136
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK+ GD + + +P EI+ V
Sbjct: 137 ISNESPIAQALIGKKTGDKVRIESPAATYDVEIISVE 173
>gi|257138318|ref|ZP_05586580.1| transcription elongation factor GreB [Burkholderia thailandensis
E264]
Length = 166
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 72/138 (52%), Gaps = 2/138 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL E RP ++K +S A + GD SEN +Y K + R+
Sbjct: 28 KNYITPAGHKRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87
Query: 64 AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + AEV+D S + D++ FGATV ++ G + IVG E D+ G VS
Sbjct: 88 RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQD-GIEHTVTIVGIDEVDLDRGHVSW 146
Query: 123 SSPIARALIGKELGDIIS 140
SPIA AL+ +GD ++
Sbjct: 147 ISPIASALLKARVGDTVT 164
>gi|257791983|ref|YP_003182589.1| transcription elongation factor GreA [Eggerthella lenta DSM 2243]
gi|317489992|ref|ZP_07948484.1| transcription elongation factor GreA [Eggerthella sp. 1_3_56FAA]
gi|325829881|ref|ZP_08163339.1| transcription elongation factor GreA [Eggerthella sp. HGA1]
gi|257475880|gb|ACV56200.1| transcription elongation factor GreA [Eggerthella lenta DSM 2243]
gi|316910990|gb|EFV32607.1| transcription elongation factor GreA [Eggerthella sp. 1_3_56FAA]
gi|325488048|gb|EGC90485.1| transcription elongation factor GreA [Eggerthella sp. HGA1]
Length = 156
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 55/159 (34%), Positives = 92/159 (57%), Gaps = 5/159 (3%)
Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M D +T +G DK+++EL + + E+R I + I AR +GD+SEN+EY AK Q +
Sbjct: 1 MADGNFILTQEGKDKLEEELHFLETEKRAEIGERIKVAREFGDISENSEYDDAKNEQGMM 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+AE+ I++ A V++ S + + G+TV++ G ++ + IVG E+D +G
Sbjct: 61 EARIAEISRILSEATVVNTPKRS-NSVHIGSTVTV--DMGGRERVFTIVGGAESDAAAGK 117
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+S SP+ L+G + GD++ P G K T IL++
Sbjct: 118 ISNESPVGSVLLGHKKGDVVETTGPTGRKITMTILKLEH 156
>gi|110005071|emb|CAK99401.1| probable transcription elongation factor grea protein [Spiroplasma
citri]
Length = 156
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 57/156 (36%), Positives = 87/156 (55%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++I +T +G +++EL RP +I+ + EARA GDLSENA+Y AA+ Q E
Sbjct: 1 MNEEILLTKEGIKDLKEELDNLINVIRPEVIEELKEARAQGDLSENADYDAARNRQAEVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ E+E+++T+A+ I I G+TV+ K +IVG EA+ +
Sbjct: 61 GRIKEIESLLTKAKEIKEVKSKTGIIKLGSTVTFTNLLINKKYELKIVGAVEANPFENTI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SPIA+A+IGK+ GD+I + +IL V
Sbjct: 121 SNESPIAKAIIGKKAGDLIEIKGIQEPYKVKILTVE 156
>gi|160881677|ref|YP_001560645.1| transcription elongation factor GreA [Clostridium phytofermentans
ISDg]
gi|254799557|sp|A9KIP3|GREA_CLOPH RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|160430343|gb|ABX43906.1| transcription elongation factor GreA [Clostridium phytofermentans
ISDg]
Length = 160
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K +T +G +++ EL+ + +R + + I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MAEKKNILTYEGLKQLEDELQDLKVNKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ E++ I+ AEV+ + D + G V +++ D+ Y+IVG EA+ G
Sbjct: 61 EARIEEIDKILKNAEVVVEDEVDVDTVNIGCLVRILDMEFNDELEYKIVGSTEANSLKGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +ALIG D+I + G Y++L++
Sbjct: 121 ISNESPVGKALIGARKDDVIEIEINGNSFKYKVLEIQ 157
>gi|45656682|ref|YP_000768.1| transcript cleavage factor/unknown domain fusion protein
[Leptospira interrogans serovar Copenhageni str. Fiocruz
L1-130]
gi|294828301|ref|NP_713558.2| transcript cleavage factor/unknown domain fusion protein
[Leptospira interrogans serovar Lai str. 56601]
gi|45599918|gb|AAS69405.1| transcriptional elongation factor [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|293386153|gb|AAN50576.2| transcript cleavage factor/unknown domain fusion protein
[Leptospira interrogans serovar Lai str. 56601]
Length = 926
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 84/152 (55%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I VT + ++ ++E E P K I EA+ GDL ENAEY+AA E Q + +
Sbjct: 766 ILVTRRALNRKKEEFEHLLNVEMPENSKDIGEAQERGDLRENAEYKAAMEKQVQLQAAIK 825
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
LE I A ++D++ + D+I G T L +++G+ Y I+G +AD + ++S S
Sbjct: 826 RLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADTEKHIISYQS 885
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+A++L+GK+ GD +N G E Y +L +
Sbjct: 886 PLAKSLLGKKTGDSAVLNLTGAETRYTVLDIS 917
>gi|242242884|ref|ZP_04797329.1| elongation factor GreA [Staphylococcus epidermidis W23144]
gi|242233659|gb|EES35971.1| elongation factor GreA [Staphylococcus epidermidis W23144]
Length = 161
Score = 131 bits (329), Expect = 5e-29, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 8 KQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 67
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S
Sbjct: 68 IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISN 126
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
SP+A ALIGK L D + V P GGE +I+++
Sbjct: 127 ESPMAIALIGKGLNDQVRVPLPNGGEMNVKIVEIK 161
>gi|199597924|ref|ZP_03211349.1| transcription elongation factor GreA [Lactobacillus rhamnosus
HN001]
gi|229550850|ref|ZP_04439575.1| transcription elongation factor GreA [Lactobacillus rhamnosus
LMS2-1]
gi|258507251|ref|YP_003170002.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG]
gi|258538438|ref|YP_003172937.1| transcription elongation factor GreA [Lactobacillus rhamnosus Lc
705]
gi|199591181|gb|EDY99262.1| transcription elongation factor GreA [Lactobacillus rhamnosus
HN001]
gi|229315800|gb|EEN81773.1| transcription elongation factor GreA [Lactobacillus rhamnosus
LMS2-1]
gi|257147178|emb|CAR86151.1| Transcription elongation factor [Lactobacillus rhamnosus GG]
gi|257150114|emb|CAR89086.1| Transcription elongation factor [Lactobacillus rhamnosus Lc 705]
gi|259648617|dbj|BAI40779.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG]
Length = 165
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T G ++QE+ + RP IK ++EA A GD SENAEY AAK E
Sbjct: 1 MVTYHEITPAGLANLKQEVADLKAI-RPAKIKNLAEAAALGDRSENAEYSAAKRELRQLE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ L+ +I A+V + + + G V+L + D+ Y++VG EA + + +
Sbjct: 60 GRLRYLDKLIRYAKV--TTPAAANLADIGNWVTLEFDDDQDEDTYELVGPAEAGMGAAKL 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+I+SP+ A+ +GD ++V AP G ++ +
Sbjct: 118 AINSPLGAAVRRHHVGDTVTVTAPSGTYQVTVMAIS 153
>gi|115374183|ref|ZP_01461470.1| transcription elongation factor GreB [Stigmatella aurantiaca
DW4/3-1]
gi|115368850|gb|EAU67798.1| transcription elongation factor GreB [Stigmatella aurantiaca
DW4/3-1]
Length = 144
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 79/143 (55%), Gaps = 2/143 (1%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
+EL ERP++ +S A A GD SENAEY K+ + R+ L+ + A ++
Sbjct: 3 RELLRLLNVERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRRIRFLQKRLDTATIV 62
Query: 77 DISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135
+ R+ FGATV+L +++ G + YQIVG E D Q G +S+ SPI +AL+ K +
Sbjct: 63 TPAEQTDQGRVYFGATVTLEDED-GVQTTYQIVGSDEIDTQGGRISVESPIGKALLRKAV 121
Query: 136 GDIISVNAPGGEKTYEILQVLWI 158
GD + V P GE I+ + ++
Sbjct: 122 GDSVEVMRPRGEIELTIVAIAYM 144
>gi|94993684|ref|YP_601782.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS10750]
gi|94547192|gb|ABF37238.1| Transcription elongation factor greA [Streptococcus pyogenes
MGAS10750]
Length = 176
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +++++EL + RP I++ I AR+YGDLSEN+EY AAK+ Q
Sbjct: 17 MAEKTYPMTLTEKEQLEKELEELKLVRRPEIVERIKIARSYGDLSENSEYDAAKDEQAFV 76
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG
Sbjct: 77 EGQISTLETKIRYAEIIDSDAVAKDEVAIGKTVIVHEVGTTDKDTYHIVGAAGADIFSGK 136
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK+ GD + + +P EI+ V
Sbjct: 137 ISNESPIAQALIGKKTGDKVRIESPAATYDVEIISVE 173
>gi|315129891|gb|EFT85881.1| elongation factor GreA [Staphylococcus aureus subsp. aureus CGS03]
Length = 158
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 58/155 (37%), Positives = 97/155 (62%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +GF+K+++EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 5 KQYPMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E+++ A +I+ T + + G TV+ VE ++++YQIVG E+D +G +S
Sbjct: 65 IQRIEHMLRNALIIE-DTGDNNVVKIGKTVTFVELPGDEEESYQIVGSAESDAFNGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
SP+A+ALI K L D + V P GGE +I+ +
Sbjct: 124 ESPMAKALIDKGLDDEVRVPLPNGGEMNVKIVNIQ 158
>gi|327462009|gb|EGF08338.1| transcription elongation factor GreA [Streptococcus sanguinis
SK1057]
gi|328946834|gb|EGG40971.1| transcription elongation factor GreA [Streptococcus sanguinis
SK1087]
gi|332362238|gb|EGJ40038.1| transcription elongation factor GreA [Streptococcus sanguinis
SK1056]
Length = 160
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAKDEVAIGKTVTIQEVGESEEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD +V P G +I++V
Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKIIKVE 157
>gi|311778834|gb|ADQ08317.2| transcription elongation factor [Mycoplasma hyorhinis HUB-1]
gi|330723604|gb|AEC45974.1| transcription elongation factor GreA [Mycoplasma hyorhinis MCLD]
Length = 164
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 52/153 (33%), Positives = 92/153 (60%), Gaps = 1/153 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++I +T + + ++EL ER ++I I AR GDLSENAEY AA+E Q + E R
Sbjct: 8 EEIFLTKESLESYKKELNQLINVERNKVIDEIKSAREQGDLSENAEYDAAREKQGIIEAR 67
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+E+I+++A++I+ + + D I G+ VS++ + N QIVG +A+ +S
Sbjct: 68 ILEIESILSKAKLIENTGLKSDEITIGSKVSILNLKTQTSHNVQIVGSLDANPFQNKISN 127
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+A ALIG++ G+ + ++ + + +IL +
Sbjct: 128 LSPLASALIGRKAGEEVEIDV-SEKYSVQILSI 159
>gi|321310951|ref|YP_004193280.1| transcription elongation factor GreA [Mycoplasma haemofelis str.
Langford 1]
gi|319802795|emb|CBY93441.1| transcription elongation factor GreA [Mycoplasma haemofelis str.
Langford 1]
Length = 157
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 48/157 (30%), Positives = 89/157 (56%), Gaps = 2/157 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K +T + + ++ E +R +I+ I ARA GDLSENA+Y+ A + Q + EG
Sbjct: 1 MRKHRLTVESLENLKAEYNNLVNVDRVEVIEEIKAARANGDLSENADYETALDKQKVIEG 60
Query: 62 RMAELENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+AE++ I+ E+I + +T S + G+ V ++E + + Y+I+G + + G
Sbjct: 61 RIAEIKAILDNHEIISSEGTTDSSGVVKIGSKVKILEMDENVEFEYEILGSVDNNPSMGR 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S P+A+A++GK+ G+++ V +ILQ+L
Sbjct: 121 ISNECPLAKAMLGKKAGEVVEVQNIAVPYKVKILQIL 157
>gi|94971605|ref|YP_593653.1| GreA/GreB family elongation factor [Candidatus Koribacter
versatilis Ellin345]
gi|94553655|gb|ABF43579.1| GreA/GreB family elongation factor [Candidatus Koribacter
versatilis Ellin345]
Length = 212
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 5/158 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G ++++ E R+ ERP +++ + A GD S+NA+Y+ K +GR+
Sbjct: 19 KNYITPGGLERLKDEHRFLLTRERPAVVEVVQWAAGNGDRSDNADYRYGKRRLRQIDGRI 78
Query: 64 AELENIITRAEVIDI----STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
L I AE++D + + R FGATV +G ++ IVG E D+
Sbjct: 79 RFLSKRIEAAELVDPERPRTGQAATRAFFGATVRYENA-AGVERVVSIVGVDEVDLSRNH 137
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S SP+ RAL GD + + APGG + +L+V +
Sbjct: 138 ISWMSPLGRALTKSAEGDSVVLKAPGGTEELTVLEVRY 175
>gi|328479717|gb|EGF48865.1| transcription elongation factor GreA [Lactobacillus rhamnosus MTCC
5462]
Length = 134
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 54/134 (40%), Positives = 91/134 (67%), Gaps = 2/134 (1%)
Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
+ ++RP +I+ I AR +GDLSEN+EY+AAK+ Q+ E R+ ++ ++ AE+ID ++
Sbjct: 2 KTKKRPEVIERIKVARGFGDLSENSEYEAAKDEQSTLENRIVTIQTMLRYAEIIDAKAVA 61
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
+ ++ G V+ + GD++ Y+IVG EAD +G +S SPIA+ LIG+++GD +++N
Sbjct: 62 KNEVSIGKKVTF--EEDGDEETYEIVGAAEADAFNGKISNESPIAQGLIGRKVGDQVTIN 119
Query: 143 APGGEKTYEILQVL 156
PGGE T +I +V
Sbjct: 120 TPGGEMTVKITKVE 133
>gi|297559077|ref|YP_003678051.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296843525|gb|ADH65545.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 166
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 2/150 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D+++ EL R I + I AR GDL EN Y AAKE Q E R+ +
Sbjct: 11 WLTQEAYDRLKSELDHLSGSGRIEIAEKIEAAREEGDLKENGGYHAAKEEQGKMEARILQ 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L I+ A V + + + + G TV++ D+ + + +E+ + S SP
Sbjct: 71 LTEILRTARVGE-APHTEGVVGPGMTVTVKFDGDDDEVTFLLASREESGSPIDVYSPRSP 129
Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQ 154
+ A+ GK +G+ +S P G+ EI+
Sbjct: 130 LGSAINGKRVGENVSYTLPNGKSLGVEIID 159
>gi|261855687|ref|YP_003262970.1| transcription elongation factor GreB [Halothiobacillus neapolitanus
c2]
gi|261836156|gb|ACX95923.1| transcription elongation factor GreB [Halothiobacillus neapolitanus
c2]
Length = 175
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 82/156 (52%), Gaps = 6/156 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++++G ++ EL + ER +++A+SEA A GD SENAEY K + R+ L
Sbjct: 6 ISARGHARLLAELDQLWRVERRLVVQAVSEAAALGDRSENAEYIYGKRRLREIDRRIRYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +V+ +++ FGA ++L+ + ++ +VG E D + L+SI SP+
Sbjct: 66 QKRLGDIKVVRQPPTDMNKVYFGARITLLYADD-REQTVCLVGPDEIDPANQLISIDSPL 124
Query: 127 ARALIGKELGDIISVNAPGGEKT-----YEILQVLW 157
A+A++GK L + + P T EI+ + +
Sbjct: 125 AKAVLGKALDAEVVLFLPSETSTPRRVHAEIIAIEY 160
>gi|21909791|ref|NP_664059.1| transcription elongation factor GreA [Streptococcus pyogenes
MGAS315]
gi|139474369|ref|YP_001129085.1| transcription elongation factor GreA [Streptococcus pyogenes str.
Manfredo]
gi|54037221|sp|P64286|GREA_STRP3 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54037222|sp|P64287|GREA_STRP8 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54041331|sp|P64285|GREA_STRP1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|73919710|sp|Q5XDQ7|GREA_STRP6 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166200973|sp|A2RGA4|GREA_STRPG RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|21903976|gb|AAM78862.1| putative transcription elongation factor [Streptococcus pyogenes
MGAS315]
gi|134272616|emb|CAM30883.1| transcription elongation factor [Streptococcus pyogenes str.
Manfredo]
Length = 160
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +++++EL + RP I++ I AR+YGDLSEN+EY AAK+ Q
Sbjct: 1 MAEKTYPMTLTEKEQLEKELEELKLVRRPEIVERIKIARSYGDLSENSEYDAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG
Sbjct: 61 EGQISTLETKIRYAEIIDSDAVAKDEVAIGKTVIVQEVGTTDKDTYHIVGAAGADIFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK+ GD + + +P EI+ V
Sbjct: 121 ISNESPIAQALIGKKTGDKVRIESPAATYDVEIISVE 157
>gi|314966306|gb|EFT10405.1| transcription elongation factor GreA [Propionibacterium acnes
HL082PA2]
gi|315093472|gb|EFT65448.1| transcription elongation factor GreA [Propionibacterium acnes
HL060PA1]
gi|327327087|gb|EGE68868.1| transcription elongation factor GreA [Propionibacterium acnes
HL103PA1]
Length = 168
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 7/160 (4%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + +T + FDK+ QEL + + E R I I++AR+ GDLSEN YQAA+E Q E R
Sbjct: 6 DTVWLTQEAFDKLTQELEYLKGEGRTVIANKIADARSEGDLSENGGYQAAREEQGQAEAR 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-----DVQS 117
+ +LE ++ AEV + + S D + G+ V++ + + ++G ++ V
Sbjct: 66 IRQLEQMLRNAEVGEAPS-SPDEVVPGSKVTICYFDDESDTDTFLLGSRQVMGLDDSVNV 124
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+ S SP+ A++G G+ AP G+ IL V
Sbjct: 125 SVYSPQSPLGGAILGHSKGESTEYQAPNGKTIKVTILNVE 164
>gi|219856286|ref|YP_002473408.1| hypothetical protein CKR_2943 [Clostridium kluyveri NBRC 12016]
gi|219570010|dbj|BAH07994.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 157
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + +T G K+++EL + + +R I A+ ARA GDLSENA+Y AAKE Q++ E
Sbjct: 4 MQDVILTEAGKKKLEEELEYLKTVKRVEIKAALKAARAQGDLSENADYSAAKEDQSMTET 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE + A +I+ S++ D T + + + + +V E+DV++ +S
Sbjct: 64 RIQELEYQLKNAVIIE-SSLETDVFDINRTALVKFYDVDEVEEVTLVSSVESDVKNMRIS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
I SP+ +AL ++GD +V +P G E+ +
Sbjct: 123 IESPLGKALFRLKVGDKATVISPDGNYDVEVEK 155
>gi|218282252|ref|ZP_03488551.1| hypothetical protein EUBIFOR_01133 [Eubacterium biforme DSM 3989]
gi|218216790|gb|EEC90328.1| hypothetical protein EUBIFOR_01133 [Eubacterium biforme DSM 3989]
Length = 162
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 5/159 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K VT +G++ + E + R +I + EARA GDLSENA+Y AA+E Q EGR
Sbjct: 4 EKFYVTQEGYNDLVNEHENLVHKVRQEVIVELQEARAQGDLSENADYDAAREHQAQVEGR 63
Query: 63 MAELENIITRAEVIDIS-----TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
+ ELE +I AE+I S + + G+TV +++ + + + IVG EAD +
Sbjct: 64 IRELEAMIKNAEIITESADVEDKKKKNVVKLGSTVKILDLSDNQEVTFNIVGTIEADPFN 123
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
G +S ++P+A ++ ++GD+ +V +IL++
Sbjct: 124 GKLSNTTPLAEVIMDHKVGDVCTVKRVEEPYDVKILEIK 162
>gi|169836893|ref|ZP_02870081.1| transcription elongation factor GreA [candidate division TM7
single-cell isolate TM7a]
Length = 151
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 6/156 (3%)
Query: 2 VDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
++K+ +T G ++++ EL + R I + I+EAR YGDLSENAEY AA+E Q + E
Sbjct: 1 MNKVYQITEAGKNELKDELETLKG-RRGEIAEKIAEARDYGDLSENAEYDAAREEQGIVE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AE+ENI+ A +I + ++ G+ V L+ + Y +VG EAD G V
Sbjct: 60 TRIAEIENILQNAAII--TGGVSGQVGLGSVVELMTGS--KTAVYTVVGPVEADPLEGKV 115
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SPI AL+GK++ DI+ +N P G+ Y+I+ +
Sbjct: 116 SNESPIGAALMGKKVDDIVEINTPKGKLEYKIISIK 151
>gi|313897330|ref|ZP_07830873.1| transcription elongation factor GreA [Clostridium sp. HGF2]
gi|312957700|gb|EFR39325.1| transcription elongation factor GreA [Clostridium sp. HGF2]
Length = 159
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 91/154 (59%), Gaps = 2/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K VT +G D++ +E R +I+ + EARA GDLSENA+Y AA++ Q E R
Sbjct: 4 EKFLVTKEGLDELLKEQDNLIHVVRDEVIRELQEARAQGDLSENADYDAARDRQARVEAR 63
Query: 63 MAELENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ +LE +I AE+I D + ++ G+TV++++ ++ +++ Y IVG EAD +G +
Sbjct: 64 IRDLEAMIANAEIISEDKKAATKKTVSLGSTVTILDMSTNEEETYNIVGSIEADPLNGKL 123
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
S +P+A +L+ ++GD++ + +++
Sbjct: 124 SNITPLATSLMDHKIGDVVEIETAEEPYQVKVID 157
>gi|12045138|ref|NP_072949.1| transcription elongation factor GreA [Mycoplasma genitalium G37]
gi|255660457|ref|ZP_05405866.1| transcription elongation factor GreA [Mycoplasma genitalium G37]
gi|1346176|sp|P47524|GREA_MYCGE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|1045978|gb|AAC71504.1| transcription elongation factor GreA [Mycoplasma genitalium G37]
gi|166078978|gb|ABY79596.1| transcription elongation factor GreA [synthetic Mycoplasma
genitalium JCVI-1.0]
Length = 161
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K +T +GF ++++EL Q +RP II+ + EAR GDLSENA+Y AAK Q E R
Sbjct: 4 NKNYLTQEGFKQLEKELENLIQVKRPEIIRLLQEARDQGDLSENADYDAAKAQQGEIETR 63
Query: 63 MAELENIITRAEVIDI--STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+AE+++I+ A++I + +++ G+TV + + +S + Y IVG EA+ + +
Sbjct: 64 IAEIQDILANAKLISDHQAKTKVTKVSLGSTVEIYDYSSKSNEKYTIVGTLEANPEEHKI 123
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+A A+ G+ +GD V +IL++
Sbjct: 124 SNESPLALAIYGRLIGDECDVVGIEVPYRVKILKIS 159
>gi|332881700|ref|ZP_08449348.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332680339|gb|EGJ53288.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 155
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 54/152 (35%), Positives = 92/152 (60%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ +L+ + ERP AI+EAR GDLSEN+EY AAKE Q + E ++ +
Sbjct: 3 YMSQEGYDKLVAQLKEMETIERPAASAAIAEARDKGDLSENSEYDAAKEHQAMLEMKINQ 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ +I A++ID S + D + + V + + K Y IV + EA+++ G +S+ +P
Sbjct: 63 LKAVIGDAKIIDTSKLKADTVQILSKVEMRNVKNNMKMAYTIVSETEANLKEGKISVQTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ L+GK++GD+ + P G EI + +
Sbjct: 123 IAQGLLGKKVGDVAEIKIPHGTVQLEITNISF 154
>gi|328480203|gb|EGF49134.1| transcription elongation factor GreA [Lactobacillus rhamnosus MTCC
5462]
Length = 165
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T G ++QE+ + RP IK ++EA A GD SENAEY AAK E
Sbjct: 1 MVTYHEITPAGLANLKQEVADLKAI-RPAKIKNLAEAAALGDRSENAEYSAAKRELRQLE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ L+ +I A+V + + + G V+L + D+ Y++VG EA + + +
Sbjct: 60 GRLRYLDKLIRYAKV--TTPAAANLADIGNWVTLKFDDDQDEDTYELVGPAEAGMGAAKL 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+I+SP+ A+ +GD ++V AP G ++ +
Sbjct: 118 AINSPLGAAVRRHYVGDTVTVTAPSGTYQVTVMAIS 153
>gi|319400941|gb|EFV89160.1| transcription elongation factor greA [Staphylococcus epidermidis
FRI909]
Length = 158
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +G++K++QEL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 5 KQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +E++I A +I+ + + G TV+ +E ++++YQIVG EAD G +S
Sbjct: 65 IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
SP+A ALIGK L D + V P GGE +I+++
Sbjct: 124 ESPMAIALIGKGLNDQVRVPLPNGGEMNVKIVEIK 158
>gi|168183357|ref|ZP_02618021.1| transcription elongation factor GreA [Clostridium botulinum Bf]
gi|237793993|ref|YP_002861545.1| transcription elongation factor GreA [Clostridium botulinum Ba4
str. 657]
gi|182673543|gb|EDT85504.1| transcription elongation factor GreA [Clostridium botulinum Bf]
gi|229261106|gb|ACQ52139.1| transcription elongation factor GreA [Clostridium botulinum Ba4
str. 657]
Length = 154
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 86/153 (56%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+
Sbjct: 2 KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L +I+ A VID + + + + N +V +AD ++ L+S+
Sbjct: 62 QYLLTMISTASVIDEKNQDKSVLGVNSKCKIKFVEDEFETNVSLVTTMDADPENMLISVE 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL+GK++GDI V+APG + T E+L+++
Sbjct: 122 SDLGKALMGKKVGDIAEVDAPGEKYTVEVLEII 154
>gi|325268494|ref|ZP_08135124.1| transcription elongation factor GreA [Prevotella multiformis DSM
16608]
gi|324989022|gb|EGC20975.1| transcription elongation factor GreA [Prevotella multiformis DSM
16608]
Length = 169
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 52/151 (34%), Positives = 92/151 (60%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AE
Sbjct: 16 YMSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAE 75
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ + +A+++D+S +S D + +TV + + K Y IV + EA+++ +SI +P
Sbjct: 76 MKMTVAQAKIVDVSRLSTDAVQIMSTVEMTNVKTHAKMKYTIVSETEANLKQNKISIKTP 135
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+A+ L+ K++GD + + P G I +
Sbjct: 136 VAQGLLNKKVGDEVDIKIPRGTIRLRIDNIT 166
>gi|294505364|ref|YP_003569426.1| transcription elongation factor [Yersinia pestis Z176003]
gi|294355823|gb|ADE66164.1| transcription elongation factor [Yersinia pestis Z176003]
Length = 117
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 58/117 (49%), Positives = 86/117 (73%), Gaps = 1/117 (0%)
Query: 43 LSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGD 101
+ ENAEY AA+E Q EGR+ E+E ++ A+VIDI+ M + R+ FGATV ++ N+ +
Sbjct: 1 MKENAEYHAAREQQGFCEGRIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNLNTEE 60
Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
++NY+IVGD EAD + L+S++SPIAR LIGKE+ D++ ++ PGGE YEIL V ++
Sbjct: 61 EQNYRIVGDDEADFKQNLISVNSPIARGLIGKEVDDVVVIHTPGGEVEYEILSVEYV 117
>gi|325696362|gb|EGD38253.1| transcription elongation factor GreA [Streptococcus sanguinis
SK160]
Length = 160
Score = 129 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAKDEVAIGKTVTIQEVGESEEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD +V P G +I++V
Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKIIEVE 157
>gi|332522954|ref|ZP_08399206.1| transcription elongation factor GreA [Streptococcus porcinus str.
Jelinkova 176]
gi|332314218|gb|EGJ27203.1| transcription elongation factor GreA [Streptococcus porcinus str.
Jelinkova 176]
Length = 160
Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +++++EL + RP +++ I AR+YGDLSEN+EY AAK+ Q
Sbjct: 1 MAEKTYPMTEIEKEQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+ID ++ D +A G TV + E + DK Y IVG AD+ SG
Sbjct: 61 EGQISTLETKIRFAEIIDSDAVAKDEVAIGKTVVVQEVGTNDKDTYHIVGSAGADIFSGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ALIGK+ GD + +P EI+ V
Sbjct: 121 ISNESPIAQALIGKKKGDKAQIVSPATTYEVEIVSVE 157
>gi|293400456|ref|ZP_06644601.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305482|gb|EFE46726.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 158
Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 56/153 (36%), Positives = 89/153 (58%), Gaps = 1/153 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K VT +G D++ +E R +I + EARA GDLSENA+Y AA++ Q E R
Sbjct: 4 EKFYVTKEGLDELLKEQDNLIHVVRDEVILELQEARAQGDLSENADYDAARDHQARVEAR 63
Query: 63 MAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ ELE +I AE+I+ S + G+TV++ + +S +++ Y IVG EAD +G +S
Sbjct: 64 IRELEAMIANAEIIEGDKETSSKTVGLGSTVTIKDLSSEEEETYTIVGSIEADPLNGKLS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+P+A AL+ +LGDI+ V+ +I+
Sbjct: 124 NITPLAVALLDNKLGDIVEVSNVEEPYKVKIVN 156
>gi|161506805|ref|YP_001576759.1| transcription elongation factor GreA [Lactobacillus helveticus DPC
4571]
gi|260102224|ref|ZP_05752461.1| transcription elongation factor GreA 1 [Lactobacillus helveticus
DSM 20075]
gi|160347794|gb|ABX26468.1| transcription elongation factor [Lactobacillus helveticus DPC 4571]
gi|260083965|gb|EEW68085.1| transcription elongation factor GreA 1 [Lactobacillus helveticus
DSM 20075]
Length = 153
Score = 129 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK +
Sbjct: 1 MVYFQKMTPEGYKQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + AE++ T ++ G TV L + + + Y+IVG EAD+ G +
Sbjct: 60 SRLRYLGKQLKYAEIV--KTTDDGKVDCGKTVVLKFDDDDETEEYKIVGRMEADLADGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +A++ +E G + +V AP GE I++V
Sbjct: 118 SCDSPLGQAIMKQEAGGVATVEAPAGEYKVTIVEVK 153
>gi|256844340|ref|ZP_05549826.1| transcription elongation factor GreA [Lactobacillus crispatus
125-2-CHN]
gi|262047271|ref|ZP_06020229.1| transcription elongation factor GreA [Lactobacillus crispatus
MV-3A-US]
gi|295692071|ref|YP_003600681.1| transcription elongation factor [Lactobacillus crispatus ST1]
gi|256613418|gb|EEU18621.1| transcription elongation factor GreA [Lactobacillus crispatus
125-2-CHN]
gi|260572516|gb|EEX29078.1| transcription elongation factor GreA [Lactobacillus crispatus
MV-3A-US]
gi|295030177|emb|CBL49656.1| Transcription elongation factor [Lactobacillus crispatus ST1]
Length = 153
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK +
Sbjct: 1 MVYFQKMTPEGYQQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + AE++ ++ G TV L + + + Y++VG EAD+ +G V
Sbjct: 60 SRLRYLGKQLKYAEIV--KAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKV 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +A++ KE G +V AP GE I++V
Sbjct: 118 SFDSPLGQAIMKKEAGTTATVAAPAGEYQVTIVEVK 153
>gi|261885949|ref|ZP_06009988.1| transcription elongation factor GreA [Campylobacter fetus subsp.
venerealis str. Azul-94]
Length = 139
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 52/128 (40%), Positives = 90/128 (70%), Gaps = 2/128 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + P+T G++K+ EL+ + +RP I++ I AR++GDL ENAEY AA+E Q E
Sbjct: 1 MTE--PMTLYGYEKLSSELKDLKLVQRPAIVEEIDIARSHGDLKENAEYHAAREKQAFIE 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+AEL +I++RA+VI+ S DR+ FG+T+++++ ++ + Y IVG E++++ GL+
Sbjct: 59 NRIAELSDILSRAKVINPSEYEHDRVKFGSTITIMDVDTELETTYTIVGISESNLERGLI 118
Query: 121 SISSPIAR 128
SI++P+A+
Sbjct: 119 SINTPLAK 126
>gi|148378676|ref|YP_001253217.1| transcription elongation factor GreA [Clostridium botulinum A str.
ATCC 3502]
gi|153933080|ref|YP_001383060.1| transcription elongation factor GreA [Clostridium botulinum A str.
ATCC 19397]
gi|153936284|ref|YP_001386609.1| transcription elongation factor GreA [Clostridium botulinum A str.
Hall]
gi|187777798|ref|ZP_02994271.1| hypothetical protein CLOSPO_01390 [Clostridium sporogenes ATCC
15579]
gi|148288160|emb|CAL82228.1| transcription elongation factor [Clostridium botulinum A str. ATCC
3502]
gi|152929124|gb|ABS34624.1| transcription elongation factor GreA [Clostridium botulinum A str.
ATCC 19397]
gi|152932198|gb|ABS37697.1| transcription elongation factor GreA [Clostridium botulinum A str.
Hall]
gi|187774726|gb|EDU38528.1| hypothetical protein CLOSPO_01390 [Clostridium sporogenes ATCC
15579]
Length = 154
Score = 129 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 86/153 (56%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+
Sbjct: 2 KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L +I+ A VID + + + + + N +V +AD + L+S+
Sbjct: 62 QYLLTMISTASVIDEKNQNKSVLGVNSKCKIKFIEDEFETNVSLVTTMDADPEKMLISVE 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL+GK++GD+ V+APG + T E+L+++
Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154
>gi|302336411|ref|YP_003801618.1| GreA/GreB family elongation factor [Olsenella uli DSM 7084]
gi|301320251|gb|ADK68738.1| GreA/GreB family elongation factor [Olsenella uli DSM 7084]
Length = 157
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 4/158 (2%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K I +T +G K+ EL +R+ E R I++ I EAR +GDLSENAEY AAKE Q+ N
Sbjct: 1 MANKEIILTPEGRQKLVDELAYREGERRDEIVERIKEARGFGDLSENAEYDAAKEEQSQN 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ E+ I+ A+V++ ++ G TV L + G K ++ IVG E +
Sbjct: 61 ESRVNEIRQILVAAKVVERGEGELS-VSIGTTVELEDAK-GKKTSFTIVGTTETNSLEHR 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+S SP LIG +GD +S P G+ +TY ++ +
Sbjct: 119 ISNESPAGAVLIGHVVGDEVSFTTPNGKLRTYTVVNIT 156
>gi|83814801|ref|YP_445548.1| transcription elongation factor GreA [Salinibacter ruber DSM 13855]
gi|83756195|gb|ABC44308.1| transcription elongation factor GreA [Salinibacter ruber DSM 13855]
Length = 164
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/154 (35%), Positives = 97/154 (62%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ + +T +G +++++EL + EER RI I+EARA GDLSENAEY AAKE Q E R
Sbjct: 10 ETVYMTEEGLEELKEELHQLKTEERSRIADEIAEARAKGDLSENAEYDAAKEEQGKLEAR 69
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ++E+ I RA ++D ST+ + + V++ ++GD++ + +V ++EA++ +S+
Sbjct: 70 IKQIEDTIARARIVDESTVDDSKAYILSDVTVENLDTGDEQTFTLVSEEEANISENKISV 129
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPI L+ +E GD +S++ P G ++I +
Sbjct: 130 DSPIGEGLLAQEEGDEVSIDVPAGTVHFKIKDIS 163
>gi|13508140|ref|NP_110089.1| transcription elongation factor GreA [Mycoplasma pneumoniae M129]
gi|2494921|sp|P78019|GREA_MYCPN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|1674124|gb|AAB96085.1| transcription elongation factor [Mycoplasma pneumoniae M129]
Length = 160
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 89/155 (57%), Gaps = 1/155 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K +T +G +++ EL Q +RP IIK + EAR GDLSENA+Y AAK Q E R
Sbjct: 4 NKNYLTEEGLKQLEAELEHLIQVKRPAIIKLLQEARDQGDLSENADYDAAKAQQGEIETR 63
Query: 63 MAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+AE+++I+ ++I+ S +++ G+TV + + +S + Y IVG EA+ + +S
Sbjct: 64 IAEIQDILANVKLINESQTKKANKVTLGSTVEIYDYSSKTHEKYTIVGALEANPEEHRIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+A A+ G+ + D V +I++++
Sbjct: 124 NESPLAHAIYGRLVDDECDVVGIEVPYRVKIVKII 158
>gi|325860400|ref|ZP_08173512.1| transcription elongation factor GreA [Prevotella denticola CRIS
18C-A]
gi|327312605|ref|YP_004328042.1| transcription elongation factor GreA [Prevotella denticola F0289]
gi|325482058|gb|EGC85079.1| transcription elongation factor GreA [Prevotella denticola CRIS
18C-A]
gi|326944307|gb|AEA20192.1| transcription elongation factor GreA [Prevotella denticola F0289]
Length = 153
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 94/150 (62%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ +G+DK+ +L++ + ERP+ AI+EA GDLSEN+EY AAKE Q E R+AE+
Sbjct: 1 MSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAEM 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +A+++D+S +S + + +TV + + + K Y IV + EA+++ +SI +PI
Sbjct: 61 KMTVAQAKIVDLSRLSTEAVQIMSTVEMTDVKTKAKMKYTIVSETEANLKQNKISIKTPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
A+ L+ K++GD + + P G I ++
Sbjct: 121 AQGLLNKKVGDEVEITIPRGTIKLRIDKIT 150
>gi|328463913|gb|EGF35431.1| transcription elongation factor GreA [Lactobacillus helveticus MTCC
5463]
Length = 153
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK +
Sbjct: 1 MVYFQKMTPEGYKQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + AE++ T ++ G TV L + + + Y+IVG EAD+ G +
Sbjct: 60 SRLRYLGKQLKYAEIV--KTTDDGKVDCGKTVVLKFDDDDETEEYKIVGRMEADLADGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +A++ +E G + +V AP GE I++V
Sbjct: 118 SCDSPLGQAIMKQEAGGVATVEAPAGEHKVTIVEVK 153
>gi|283769390|ref|ZP_06342289.1| putative transcription elongation factor GreA [Bulleidia extructa
W1219]
gi|283104047|gb|EFC05431.1| putative transcription elongation factor GreA [Bulleidia extructa
W1219]
Length = 157
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI VT +G K+Q E R ++ ++EARA GDLSENA+Y AA+E+Q E R
Sbjct: 4 NKIYVTQEGLKKLQDEYNHLVHVVREQVKTELAEARAQGDLSENADYDAAREMQAQVEAR 63
Query: 63 MAELENIITRAEVI-DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+AELE + +I T + GATV L ++ + Y IVG EAD +G +S
Sbjct: 64 IAELEINLQNYVLIDTTKTKDSTTVRIGATVQLEFLDTKEVNEYMIVGSTEADPLNGKLS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+P+A+A++ ++GD + VN G I+ V
Sbjct: 124 NETPLAQAILEHKVGDTVFVNV-GKPYQVIIISVK 157
>gi|153955944|ref|YP_001396709.1| GreA2 [Clostridium kluyveri DSM 555]
gi|146348802|gb|EDK35338.1| GreA2 [Clostridium kluyveri DSM 555]
Length = 154
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 50/153 (32%), Positives = 86/153 (56%), Gaps = 1/153 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + +T G K+++EL + + +R I A+ ARA GDLSENA+Y AAKE Q++ E
Sbjct: 1 MQDVILTEAGKKKLEEELEYLKTVKRVEIKAALKAARAQGDLSENADYSAAKEDQSMTET 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE + A +I+ S++ D T + + + + +V E+DV++ +S
Sbjct: 61 RIQELEYQLKNAVIIE-SSLETDVFDINRTALVKFYDVDEVEEVTLVSSVESDVKNMRIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
I SP+ +AL ++GD +V +P G E+ +
Sbjct: 120 IESPLGKALFRLKVGDKATVISPDGNYDVEVEK 152
>gi|160895078|ref|ZP_02075852.1| hypothetical protein CLOL250_02628 [Clostridium sp. L2-50]
gi|156863509|gb|EDO56940.1| hypothetical protein CLOL250_02628 [Clostridium sp. L2-50]
Length = 160
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/157 (38%), Positives = 87/157 (55%), Gaps = 1/157 (0%)
Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K V T G KI++EL+ + +R I I EAR GDLSENAEY AAK+ Q
Sbjct: 1 MAEKKQVVTYTGLKKIEEELQDLKVNKRREIAAKIKEAREQGDLSENAEYDAAKDEQRDI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ +LE I+ EV+D + + + G TV++ + ++ + IVG EAD+
Sbjct: 61 EARIEQLEAILKNVEVVDEDEVDTEVVGIGRTVTVYDYEFDEEVVFHIVGSTEADIMKNK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ AL G +G+ + V AP GE Y IL +
Sbjct: 121 ISDESPVGMALKGARVGEEVIVEAPDGEFKYRILDIK 157
>gi|257064643|ref|YP_003144315.1| transcription elongation factor GreA [Slackia heliotrinireducens
DSM 20476]
gi|256792296|gb|ACV22966.1| transcription elongation factor GreA [Slackia heliotrinireducens
DSM 20476]
Length = 155
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T +G +K++ EL + + E+R + + I AR +GD+SEN+EY AK Q + E
Sbjct: 1 MANDYVLTPEGKEKLEAELLYLENEKRAEVGERIKIAREFGDISENSEYDDAKNEQGMLE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+A++ +I+ A V++ S +R+ G+TV++ G ++ + IVG EA+ G +
Sbjct: 61 VRIAQINDILANATVVEAPKRS-NRVTVGSTVTV--DMGGRERVFTIVGGAEANAAEGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
S SP+ L+G + GD ++ P G K +L +
Sbjct: 118 SNDSPVGSVLLGSKKGDQLTTEGPTGRKIEITVLNIEH 155
>gi|290957897|ref|YP_003489079.1| transcription elongation factor [Streptomyces scabiei 87.22]
gi|260647423|emb|CBG70528.1| putative transcription elongation factor [Streptomyces scabiei
87.22]
Length = 166
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNQLRAELDYLSGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + + +A G V++ + + D + + + A S S
Sbjct: 70 LTQLLENAKVGEAPASADGAVAPGMVVTIAFDGDEDDTVTFLLASREYASSDIETYSPQS 129
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
P+ + GK++G P G+ + +IL+
Sbjct: 130 PLGSGVTGKKVGQDAQYELPNGKFASVKILK 160
>gi|221632874|ref|YP_002522096.1| transcription elongation factor greA [Thermomicrobium roseum DSM
5159]
gi|221156489|gb|ACM05616.1| transcription elongation factor greA [Thermomicrobium roseum DSM
5159]
Length = 156
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 94/158 (59%), Gaps = 4/158 (2%)
Query: 1 MVDKIPV--TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
MV + P+ T +G ++QEL +Q + P +++ + + GD+S+N+EY+ KE L
Sbjct: 1 MVRERPIVLTPEGKAALEQELEHLRQHKLPLLLERLQQLSNEGDISDNSEYEDTKEELVL 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ E+E+I+ RA++I D + G+ V+++++ G + + IV +EA+ G
Sbjct: 61 TEARIREIEHILRRAQMI-TRAGPQDEVRLGSRVTVIDEE-GSVETWVIVSPEEANAAQG 118
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+SI SP+ AL+GK +G ++V APGGE + I ++
Sbjct: 119 RISIESPVGAALLGKRVGTTVTVRAPGGEMRFTIQRIE 156
>gi|298245773|ref|ZP_06969579.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM
44963]
gi|297553254|gb|EFH87119.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM
44963]
Length = 172
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T +G+ K ++ L + + +R + EA+ GD+SE++ Y+ AK Q EG +
Sbjct: 16 VRLTPQGYTKNKERLDYLRNVKRREAADYVHEAKEAGDISESSAYEDAKNEQAKVEGEII 75
Query: 65 ELENIITRAEVIDISTMS--GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
ELE+++ AEVI ++ + G V L E SG K+ ++IV EAD +SGL+S
Sbjct: 76 ELEHLLAVAEVITPESLDRHDGTVRIGMKVEL-ESESGAKRVFKIVETYEADPKSGLISD 134
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+G + GD ++V PGG Y IL +
Sbjct: 135 QSPVGKALMGHKEGDEVTVTTPGGVTGYTILSIT 168
>gi|301633495|gb|ADK87049.1| transcription elongation factor GreA [Mycoplasma pneumoniae FH]
Length = 160
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 89/155 (57%), Gaps = 1/155 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K +T +G +++ EL Q +RP IIK + EAR GDLSENA+Y AAK Q E R
Sbjct: 4 NKNYLTEEGLKQLEAELEHLIQVKRPAIIKLLQEARDQGDLSENADYDAAKAQQGEIETR 63
Query: 63 MAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+AE+++I+ ++I+ S +++ G+TV + + +S + Y IVG EA+ + +S
Sbjct: 64 IAEIQDILANVKLINESQTKKANKVTLGSTVEIYDYSSKTHEKYTIVGALEANPEEHRIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+A A+ G+ + D V +I++++
Sbjct: 124 NESPLAHAIYGRLVDDECDVVGIEVPYRVKIVKII 158
>gi|229815845|ref|ZP_04446169.1| hypothetical protein COLINT_02898 [Collinsella intestinalis DSM
13280]
gi|229808540|gb|EEP44318.1| hypothetical protein COLINT_02898 [Collinsella intestinalis DSM
13280]
Length = 156
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 92/156 (58%), Gaps = 4/156 (2%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V +I +T++G K+++EL + + E+ I++ I EARA+GDLSENAEY AAKE Q N
Sbjct: 3 VSQIVLTAEGRKKLEEELAYLEGEKSREIVEHIKEARAFGDLSENAEYDAAKEDQARNAA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AE+ + A+ D S ++ G+ V+L++ G+ ++ IVG E +V +S
Sbjct: 63 RIAEIRATLANAQ--DAVAGSSMIVSIGSVVTLIDGE-GEASDFTIVGTTETNVLEHKIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
SP+ RA+IG G+ + V G+ + Y I ++
Sbjct: 120 NESPVGRAIIGHGEGESVEVVLANGKTRVYTIAKIS 155
>gi|150015636|ref|YP_001307890.1| GreA/GreB family elongation factor [Clostridium beijerinckii NCIMB
8052]
gi|149902101|gb|ABR32934.1| GreA/GreB family elongation factor [Clostridium beijerinckii NCIMB
8052]
Length = 154
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 81/150 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+++EL +R +R I K A A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENIKKLREELDYRMTVKRAEIAKEKLVAAAHGDRSENAEYKEACRNYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+I+ A VID ++ + + + D+ +V + D ++ ++SI S +
Sbjct: 65 LTMISTATVIDDGSIDKSVLGINSKARIRFVEDDDEVVVTLVTTMDLDPENMIISIESDL 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+AL G + GDI+ VNAPG + + EIL+VL
Sbjct: 125 GKALSGNKAGDIVEVNAPGEKYSVEILEVL 154
>gi|225873815|ref|YP_002755274.1| transcription elongation factor GreA [Acidobacterium capsulatum
ATCC 51196]
gi|225793182|gb|ACO33272.1| transcription elongation factor GreA [Acidobacterium capsulatum
ATCC 51196]
Length = 165
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 52/146 (35%), Positives = 90/146 (61%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
K+ ++++ + E + I +A A GDLSENAEY AK+ Q R+ +L+ +
Sbjct: 7 KKLLEDIKQLEHELAHELPAEIKKAAALGDLSENAEYHMAKQRQEFVNARLGQLKKRMAE 66
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
+++++ + DR+AFG+TV + + + +K Y++V +E+DV GL+S +SPI RALIG
Sbjct: 67 LSLVNLANIPHDRVAFGSTVEVFDTSKDEKIEYKLVTSEESDVSKGLISTTSPIGRALIG 126
Query: 133 KELGDIISVNAPGGEKTYEILQVLWI 158
K++GD +V P G + E+L++ I
Sbjct: 127 KQVGDTATVVTPSGNRELEVLKLTTI 152
>gi|311898109|dbj|BAJ30517.1| putative transcription elongation factor GreA [Kitasatospora setae
KM-6054]
Length = 165
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 1/153 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D +T ++K++ E R I K I AR GDL ENA Y AAK+ Q E R
Sbjct: 7 DVTWLTQDHYNKLKAEFDHLTGPWRIEIAKKIEAAREEGDLKENAGYHAAKDEQGKTEAR 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +L ++ RA+V + SG + + D + + + D + S
Sbjct: 67 IRQLSQLLERAKVGEAPADSGVVAPGMLVKVAFDGDEDDTMEFLLASREVTDGDIDVYSP 126
Query: 123 SSPIARALIGKELGDIISVNAPGGEK-TYEILQ 154
SP+ RA+IGK +G+ P G+K +I +
Sbjct: 127 QSPLGRAIIGKSVGEDAQYELPNGKKARVKITE 159
>gi|58336547|ref|YP_193132.1| transcription elongation factor GreA [Lactobacillus acidophilus
NCFM]
gi|227903098|ref|ZP_04020903.1| transcription elongation factor GreA [Lactobacillus acidophilus
ATCC 4796]
gi|58253864|gb|AAV42101.1| transcriptional elongation factor [Lactobacillus acidophilus NCFM]
gi|227869084|gb|EEJ76505.1| transcription elongation factor GreA [Lactobacillus acidophilus
ATCC 4796]
Length = 153
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ ++ +RPR IK + +ARA GDLSEN EY AK +
Sbjct: 1 MVYFQKMTPEGYKQIEDEIARLKK-DRPRRIKILQDARALGDLSENTEYTEAKRDLGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L+ + AE+++ T ++ G TV L + + + Y+IVG EA+++ G +
Sbjct: 60 SRLRYLDKQLKYAEIVE--TKDDGKVDLGKTVVLKFDDDDETEEYKIVGRMEANLEDGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +A++ KE G V AP GE I++V
Sbjct: 118 SFDSPLGQAIMKKEAGVTSIVEAPAGEYKVTIVEVK 153
>gi|73662460|ref|YP_301241.1| transcription elongation factor GreA [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|123747876|sp|Q49Y48|GREA_STAS1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|72494975|dbj|BAE18296.1| transcription elongation factor [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 158
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 59/155 (38%), Positives = 98/155 (63%), Gaps = 2/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ P+T +GF+K++ EL + +RP +++ I AR++GDLSEN+EY AAK+ Q E
Sbjct: 5 KQYPMTQEGFEKLEHELEELKTVKRPEVVEKIKIARSFGDLSENSEYDAAKDEQGFIEQD 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +EN++ A +I+ T + + + G TV++VE +++ YQIVG E+D G +S
Sbjct: 65 IQRVENMLRNALIIE-DTGNNNEVQLGKTVTIVELPGEEEEEYQIVGSAESDAFKGKISN 123
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
SP+A++LIGK+L D + V P GGE +I+ +
Sbjct: 124 ESPMAKSLIGKKLDDEVRVPLPNGGEINVKIVNIK 158
>gi|313885264|ref|ZP_07819016.1| transcription elongation factor GreA [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619955|gb|EFR31392.1| transcription elongation factor GreA [Eremococcus coleocola
ACS-139-V-Col8]
Length = 159
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/159 (43%), Positives = 103/159 (64%), Gaps = 1/159 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K+ P+T +G +K++ EL + R II+ I AR++GDLSEN+EY+AAK+ Q +
Sbjct: 1 MDEKVYPMTLEGKEKLELELEDLKVNRRKEIIERIKIARSFGDLSENSEYEAAKDEQAML 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+A +EN+I AE+ID + D ++ G V+ E GD+++Y IVG EAD
Sbjct: 61 EGRIATIENMIRFAEIIDDKHVDEDEVSLGRKVTFKELPDGDEESYIIVGSAEADPMEFK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+S SPIA++LIGK+LG I+S+ +PGG EI + I
Sbjct: 121 ISNDSPIAKSLIGKKLGQIVSIESPGGAFDVEITNIEKI 159
>gi|308234247|ref|ZP_07664984.1| GreA/GreB family elongation factor [Atopobium vaginae DSM 15829]
gi|328943529|ref|ZP_08240994.1| transcription elongation factor GreA [Atopobium vaginae DSM 15829]
gi|327491498|gb|EGF23272.1| transcription elongation factor GreA [Atopobium vaginae DSM 15829]
Length = 157
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 60/155 (38%), Positives = 92/155 (59%), Gaps = 3/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++ +T +G K+ EL +R+ E+ I++ + EAR +GDLSEN+EY AAKE Q+LNE R
Sbjct: 4 KELILTPEGRQKLVDELAYREGEKHEEIVERLKEARGFGDLSENSEYDAAKEEQSLNESR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+ I+ A+V++ + ++ G TV L +K G ++ IVG E D +S
Sbjct: 64 INEIRQILATAKVVEHTDGELS-VSIGTTVELSDKK-GKSISFTIVGTTETDSLEHKISN 121
Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
SP LIG +GD++S + P G EKTY IL +
Sbjct: 122 ESPAGAELIGHVVGDVVSFSTPSGKEKTYTILNIT 156
>gi|255526929|ref|ZP_05393824.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
gi|296184898|ref|ZP_06853309.1| putative transcription elongation factor GreA [Clostridium
carboxidivorans P7]
gi|255509377|gb|EET85722.1| transcription elongation factor GreA [Clostridium carboxidivorans
P7]
gi|296050680|gb|EFG90103.1| putative transcription elongation factor GreA [Clostridium
carboxidivorans P7]
Length = 155
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 1/155 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ I +T G K+++EL + + +R I A+ ARA GDLSENA+Y AAK+ Q++ E
Sbjct: 1 MRSIMLTEVGKKKLEEELEYLKTVKRAEIKAALKYARAQGDLSENADYDAAKDDQSMTET 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE + A +I+ S T + + D + +V E+DV++ +S
Sbjct: 61 RIMELEQQLKNAVIIEDSDEDH-VFGINKTALVKFYDIDDTEEVTLVSSVESDVKNMKIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
I SP+ AL E+G ++V +P GE E+L++L
Sbjct: 120 IESPLGAALYKIEVGKKVAVESPDGEYEVEVLKIL 154
>gi|297625161|ref|YP_003706595.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM
17093]
gi|297166341|gb|ADI16052.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM
17093]
Length = 158
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 92/158 (58%), Gaps = 2/158 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M K + +T +G++KI++ELR+ + +R +I + + A A GDL E+A Y A+ Q+ N
Sbjct: 1 MTKKPVYLTPQGYEKIKEELRYLVEVKRQQIAENMGTAIADGDLRESAAYDEARMEQSAN 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+A+LE I+ RA V++ GA+++L + SG + + +VG EAD+
Sbjct: 61 EARIADLEEILHRAVVVENQEGELAVARLGASLTLED-ESGQQTTFYLVGTHEADIFENR 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S SP+ R L+GK +GD +++ Y +++V +
Sbjct: 120 ISDESPLGRELLGKRVGDKVNLALGRTRSEYTVVEVGF 157
>gi|297584721|ref|YP_003700501.1| transcription elongation factor GreA [Bacillus selenitireducens
MLS10]
gi|297143178|gb|ADH99935.1| transcription elongation factor GreA [Bacillus selenitireducens
MLS10]
Length = 156
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 1/154 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+K +T +G K+++EL E R +++ I AR++GDLSEN+EY +AKE Q EGR
Sbjct: 4 EKHYMTEEGKKKLEEELEQLITERRKEVVERIKVARSFGDLSENSEYDSAKEEQAFVEGR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +LE +I AE+I+ S +++ G V+ VE G+++ Y IVG EAD G +S
Sbjct: 64 IQQLETMIRNAEIIEEDKNS-SKVSLGKKVTFVEIPDGEEEEYVIVGRAEADPLDGKISN 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+A++LIGKE+GD ++V+ PGG+ T +I V
Sbjct: 123 ESPMAQSLIGKEIGDQVTVSTPGGDMTVKITAVS 156
>gi|169834166|ref|YP_001694924.1| transcription elongation factor GreA [Streptococcus pneumoniae
Hungary19A-6]
gi|238688370|sp|B1ICT9|GREA_STRPI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|168996668|gb|ACA37280.1| transcription elongation factor GreA [Streptococcus pneumoniae
Hungary19A-6]
Length = 160
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 61/157 (38%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI + LIGK+ GD ++ P G +IL+V
Sbjct: 121 VSNESPIGQDLIGKKTGDTATIETPVGSYDVKILKVE 157
>gi|298242601|ref|ZP_06966408.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM
44963]
gi|297555655|gb|EFH89519.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM
44963]
Length = 154
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 52/155 (33%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T+ G + +L + E R ++ + + +A+ GD+ +NA Y AK+ Q L E
Sbjct: 3 TQDVFLTNDGLQRALSQLDNLRTEGRAKVAQYLHDAKESGDVIDNAAYDDAKKEQALLES 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE+++TRA++I+ + D ++ G+ V L G Y IVG EA +G +S
Sbjct: 63 RILELEHLVTRAKLINNAR--TDEVSLGSIVHLRSSE-GRDYCYTIVGAFEASPSAGRIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ RAL+G + GD + V+ PGG K Y I ++
Sbjct: 120 NESPVGRALLGHKAGDHVIVSTPGGVKEYTISRIE 154
>gi|313678570|ref|YP_004056310.1| transcription elongation factor GreA [Mycoplasma bovis PG45]
gi|312950163|gb|ADR24758.1| transcription elongation factor GreA [Mycoplasma bovis PG45]
Length = 163
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 88/156 (56%), Gaps = 2/156 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI ++ + ++K + E ERP + ++ EARA GDLSENAEY AA++ Q+ E R
Sbjct: 7 EKIYLSEETYNKYKNEYTELVTVERPAVQASLKEARAQGDLSENAEYDAARDRQSEVERR 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE I+ AE+ID + ++ GATV + + + I+G +++ +S
Sbjct: 67 ILELERILENAEIIDTKSAVQNKAGIGATVKYLNMKTNKELVVTIMGPHDSNPIENKISN 126
Query: 123 SSPIARALIGKE-LGDIISVNAPGGEKTYEILQVLW 157
SP+A+A++ +GD++ V P + ++L + +
Sbjct: 127 ESPVAQAIMEANGIGDVVEVEVPQ-KYNIKVLDISY 161
>gi|119505414|ref|ZP_01627487.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2080]
gi|119458692|gb|EAW39794.1| transcription elongation factor GreB [marine gamma proteobacterium
HTCC2080]
Length = 169
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 1/152 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G ++++EL+ + ERP + A+ A A GD SEN +Y K+ + R+
Sbjct: 14 YITQEGEQRLREELKELWKVERPVVTAAVQAAAANGDRSENGDYIYGKKRLREIDSRVRF 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + V+ ++ FGA V+L G ++IVG E D+ + +S SP
Sbjct: 74 LRKRLDELIVVTAGPTDPEKAYFGAYVTLENTE-GQVHQWRIVGPDEFDISAQKLSCDSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ RAL+GK + + + +P G KT+ +++V +
Sbjct: 133 LGRALLGKPIDAEVVIESPSGPKTWHLIEVRY 164
>gi|256849256|ref|ZP_05554689.1| transcription elongation factor GreA [Lactobacillus crispatus
MV-1A-US]
gi|312978351|ref|ZP_07790093.1| transcription elongation factor GreA 1 (Transcript cleavage
factorgreA 1) [Lactobacillus crispatus CTV-05]
gi|256714032|gb|EEU29020.1| transcription elongation factor GreA [Lactobacillus crispatus
MV-1A-US]
gi|310894694|gb|EFQ43766.1| transcription elongation factor GreA 1 (Transcript cleavage
factorgreA 1) [Lactobacillus crispatus CTV-05]
Length = 153
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK +
Sbjct: 1 MVYFQKMTPEGYQQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQ 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + AE++ ++ G TV L + + + Y++VG EAD+ +G V
Sbjct: 60 SRLRYLGKQLKYAEIV--KAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKV 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +A++ KE G +V AP GE I++V
Sbjct: 118 SFDSPLGQAIMKKEAGTTATVAAPVGEYQVTIVEVK 153
>gi|329935321|ref|ZP_08285287.1| transcription elongation factor GreA [Streptomyces
griseoaurantiacus M045]
gi|329305144|gb|EGG49003.1| transcription elongation factor GreA [Streptomyces
griseoaurantiacus M045]
Length = 166
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 2/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNKLKDELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ +A+V + + G V++ + + D ++ + + A S S
Sbjct: 70 LTQLLEQAQVGEAQASEDGAVGPGMVVTIAFDGDEDDTLSFLLASREYASSDIETYSPQS 129
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
P+ +IG ++G+ P G+K + +IL+
Sbjct: 130 PLGSGVIGHKVGEDAEYELPNGKKASVKILK 160
>gi|310641883|ref|YP_003946641.1| transcription elongation factor [Paenibacillus polymyxa SC2]
gi|309246833|gb|ADO56400.1| Transcription elongation factor [Paenibacillus polymyxa SC2]
Length = 159
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 95/154 (61%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+++ +T +G K+++EL+ + +R + + + A +YGDL EN+EY +AK+ Q E R
Sbjct: 4 EEVLLTKEGLAKLEEELKELKTVKRKELAERLKLAISYGDLKENSEYHSAKDDQAFMETR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LE ++T+A ++D S + ++ G+TV L + +K Y++V EADV +S
Sbjct: 64 IMVLEKMLTKARIVDESNLDLKTVSIGSTVILNDIEFSEKVEYKVVSPAEADVLDNKISY 123
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL+GKE+G II V+AP YE+L++
Sbjct: 124 ESPLGKALLGKEVGSIIHVDAPMAVIKYELLEIK 157
>gi|116513443|ref|YP_812349.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|116092758|gb|ABJ57911.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC BAA-365]
gi|325125081|gb|ADY84411.1| Transcriptional elongation factor [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 153
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ + +RPR ++ + EARA GDLSEN EY AK +
Sbjct: 1 MVYYQKMTPEGYKQIEDEIAALKA-DRPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G +
Sbjct: 60 SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGKL 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ AL+ + GD ++V AP G+ IL V
Sbjct: 118 PFDSPLGHALMKHKAGDRVTVKAPMGDYEVTILSVK 153
>gi|191637035|ref|YP_001986201.1| transcription elongation factor GreA [Lactobacillus casei BL23]
gi|239631048|ref|ZP_04674079.1| transcription elongation factor greA 1 [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|301065369|ref|YP_003787392.1| transcription elongation factor [Lactobacillus casei str. Zhang]
gi|190711337|emb|CAQ65343.1| Transcription elongation factor [Lactobacillus casei BL23]
gi|239527331|gb|EEQ66332.1| transcription elongation factor greA 1 [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|300437776|gb|ADK17542.1| Transcription elongation factor [Lactobacillus casei str. Zhang]
gi|327381062|gb|AEA52538.1| Transcription elongation factor GreA [Lactobacillus casei LC2W]
gi|327384237|gb|AEA55711.1| Transcription elongation factor GreA [Lactobacillus casei BD-II]
Length = 155
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 79/155 (50%), Gaps = 3/155 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T G ++QE+ + RP IK +++A A GD SENAEY AAK E
Sbjct: 1 MVTYHEITPTGLANLKQEVEDLKTI-RPAKIKNLADAAALGDRSENAEYSAAKRELRQLE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ L+ +I A+V + D G ++L + D+ Y++VG EA + +
Sbjct: 60 GRLRYLDKLIRYAKVTHPAA--SDIADIGNRITLKFDDDEDQATYELVGPAEAGMGQDKL 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+I+SP+ A+ GD ++V AP G ++ +
Sbjct: 118 AINSPLGAAIRQHHAGDTVTVTAPSGSYQVTLMNI 152
>gi|225377148|ref|ZP_03754369.1| hypothetical protein ROSEINA2194_02794 [Roseburia inulinivorans DSM
16841]
gi|225211053|gb|EEG93407.1| hypothetical protein ROSEINA2194_02794 [Roseburia inulinivorans DSM
16841]
Length = 167
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 85/151 (56%), Gaps = 2/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+++E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTEQDIKKMEEEIEYRKLVVRKNALEAVKEARAHGDLSENFEYHAAKKDKNQNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A++I + D + TV++ ++ +++ Y+IV + L+S SP+
Sbjct: 65 EKMIRTAKIISTDSAD-DEVGMNNTVTVYFEDDDEEETYKIVTTIRGNSLKNLISNESPL 123
Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+AL+G ++GD V EI ++
Sbjct: 124 GKALLGHKIGDRCEVKVNDNYSYFVEIRKIE 154
>gi|295838659|ref|ZP_06825592.1| transcription elongation factor GreA [Streptomyces sp. SPB74]
gi|197699092|gb|EDY46025.1| transcription elongation factor GreA [Streptomyces sp. SPB74]
Length = 165
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + ++++++EL + R I K I EAR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNRLKEELEYLSGPARTEIAKKIEEAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + G + G V++ + + D + + + A S S
Sbjct: 70 LTQLLQHAKVGEAPADDG-IVEPGMVVTIAFDGDEDDTLTFLMASREYASSDIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
P+ + GK++GD P G+K + +IL
Sbjct: 129 PLGTGVNGKKVGDTAEYELPNGKKASVKILD 159
>gi|315185942|gb|EFU19706.1| transcription elongation factor GreA [Spirochaeta thermophila DSM
6578]
Length = 898
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 81/152 (53%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I VT + Q+EL++ + E P+ K IS+A GDL ENAEY+AAKE Q + +
Sbjct: 742 IMVTPAAYAAKQKELKYLHEVEVPKNSKEISQALLLGDLRENAEYKAAKERQEMLNSTIG 801
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+L+ + RA+++ + +I+FG V+L+ + + ++ Y I+G E++ G++S S
Sbjct: 802 KLKEELERAQIVRPDEVDASQISFGTKVTLLNEETKKRETYVILGPWESNPDKGIISYLS 861
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P L G + G+ + Y + ++
Sbjct: 862 PFGSELYGHKEGEELEFTINERTYHYVVEKIE 893
>gi|206895281|ref|YP_002247422.1| transcription elongation factor GreA [Coprothermobacter
proteolyticus DSM 5265]
gi|206737898|gb|ACI16976.1| transcription elongation factor GreA [Coprothermobacter
proteolyticus DSM 5265]
Length = 163
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 56/156 (35%), Positives = 101/156 (64%), Gaps = 2/156 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++ +T +G+ KI +EL++ ++ +R + + I EARA GDLSEN+E++AAKE Q L E R
Sbjct: 6 EEAILTEEGYKKILEELKYLKEVKRKEVAEKIQEARALGDLSENSEFEAAKEEQALLEER 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVS 121
+A LE ++ A V+ ++ D+++ G V ++++++G ++++ IVG +E D SG +S
Sbjct: 66 IARLETLVYNARVVKAEDLALDQVSVGTKVLVLDESAGREESFIIVGNSEEVDPFSGKIS 125
Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
SP+ L+G++ GD + + G K YEIL ++
Sbjct: 126 SKSPLGSRLLGRKRGDRVEIKLRNGSKAVYEILDIV 161
>gi|300766895|ref|ZP_07076808.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|300495433|gb|EFK30588.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
Length = 187
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+TS G+ I+QE+ +Q +RP I+ ++ A A GD SENAEY +AK E R+
Sbjct: 38 KMTSTGYHAIEQEIEDLKQ-QRPERIRILAAAAALGDRSENAEYSSAKRDLGRLESRLRY 96
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + A+++ + +++ G V++ + D+ YQ+VG QEA+++ +S +SP
Sbjct: 97 LNKQLQYAQIVQPA--DNNQLDIGKFVTIEFLDDHDQITYQLVGKQEANLEQQKISFTSP 154
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
I +AL + D+++VNAP G +++ V
Sbjct: 155 IGQALANHTVDDVVTVNAPNGAYQVKVIAVK 185
>gi|300812144|ref|ZP_07092589.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496872|gb|EFK31949.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|325684830|gb|EGD26979.1| transcription elongation factor GreA 1 [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 153
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ + +RPR ++ + EARA GDLSEN EY AK +
Sbjct: 1 MVYYQKMTPEGYKQIEDEIAALKA-DRPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G +
Sbjct: 60 SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGKL 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ AL+ + GD ++V AP G+ IL V
Sbjct: 118 PFDSPLGHALMKHKAGDRVTVEAPMGDYEVTILSVK 153
>gi|239979735|ref|ZP_04702259.1| transcription elongation factor GreA [Streptomyces albus J1074]
gi|291451596|ref|ZP_06590986.1| transcription elongation factor [Streptomyces albus J1074]
gi|291354545|gb|EFE81447.1| transcription elongation factor [Streptomyces albus J1074]
Length = 165
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +++++ EL + R I K I AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNQLKAELEYLSGPARTEISKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ +A+V + G + G V++ + + D + + + A S S
Sbjct: 70 LTQLLAQAKVGEPPADDG-IVEPGMVVTIAFDGDPDDTLTFLMASREYASADIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
P+ + GK++GD P G++ + +IL
Sbjct: 129 PLGTGVNGKKVGDTAEYELPNGKRASVKILA 159
>gi|31544396|ref|NP_852974.1| transcription elongation factor greA [Mycoplasma gallisepticum str.
R(low)]
gi|81420953|sp|Q7NBS1|GREA_MYCGA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|31541240|gb|AAP56542.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Mycoplasma gallisepticum str. R(low)]
gi|284930439|gb|ADC30378.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Mycoplasma gallisepticum str. R(high)]
gi|284931203|gb|ADC31141.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Mycoplasma gallisepticum str. F]
Length = 159
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 51/155 (32%), Positives = 82/155 (52%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T +G K+Q ELR +R +IK I EAR GDLSENA+Y +AK Q+ E
Sbjct: 4 TKKHLLTQEGLKKLQAELRLLVDVKRADVIKLIQEAREQGDLSENADYDSAKATQSEIES 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E+++I+ E+I R+ GA V++ + + Y+IVG E+D +S
Sbjct: 64 RITEIQDILNHYEIIKEVDTKNKRVIVGAKVTIHDHSDECNYTYEIVGPIESDPAENKIS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+A+A++ K+ G+ V I +++
Sbjct: 124 HESPVAKAIMDKKEGESAEVIGIEHPYKVTIKKIV 158
>gi|307718793|ref|YP_003874325.1| hypothetical protein STHERM_c11070 [Spirochaeta thermophila DSM
6192]
gi|306532518|gb|ADN02052.1| hypothetical protein STHERM_c11070 [Spirochaeta thermophila DSM
6192]
Length = 898
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 81/152 (53%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I VT + Q+EL++ + E P+ K IS+A GDL ENAEY+AAKE Q + +
Sbjct: 742 IMVTPAAYAAKQKELKYLHEVEVPKNSKEISQALLLGDLRENAEYKAAKERQEMLNSTIG 801
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+L+ + RA+++ + +I+FG V+L+ K + ++ Y I+G E++ G++S S
Sbjct: 802 KLKEELERAQIVRPDEVDASQISFGTKVTLLNKETKKRETYVILGPWESNPDKGIISYLS 861
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P L G + G+ + Y + ++
Sbjct: 862 PFGSELYGHKEGEELEFTINERTYHYVVEKIE 893
>gi|297202039|ref|ZP_06919436.1| transcription elongation factor greA [Streptomyces sviceus ATCC
29083]
gi|197714326|gb|EDY58360.1| transcription elongation factor greA [Streptomyces sviceus ATCC
29083]
Length = 166
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 73/154 (47%), Gaps = 2/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D +T + + K+++EL + R + I+ AR GDL EN Y AAKE Q E R
Sbjct: 7 DVTWLTQEAYTKLKEELAYLSGPAREEVTAKIAAAREEGDLRENGGYHAAKEEQGKQELR 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG-DKKNYQIVGDQEADVQSGLVS 121
+ +L ++ +A+V + T + +A G V++ D + + + A S
Sbjct: 67 IRQLTQLLEKAKVGEAPTSTDGAVAPGMVVTIAFDGDESDTMTFLLASREYASADVETYS 126
Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEILQ 154
SP+ +IG ++G+ P G+K + IL+
Sbjct: 127 PQSPLGSGVIGHKVGEDAEYELPNGKKASVTILK 160
>gi|28377155|ref|NP_784047.1| transcription elongation factor GreA [Lactobacillus plantarum
WCFS1]
gi|38257536|sp|Q88ZS9|GREA1_LACPL RecName: Full=Transcription elongation factor greA 1; AltName:
Full=Transcript cleavage factor greA 1
gi|28269986|emb|CAD62886.1| transcription elongation factor GreA [Lactobacillus plantarum
WCFS1]
Length = 156
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T+ G+ I+QE+ +Q +RP I+ ++ A A GD SENAEY +AK E R+
Sbjct: 7 KMTAAGYHAIEQEIEDLKQ-QRPERIRILAAAAALGDRSENAEYSSAKRDLGRLESRLRY 65
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + A+++ + D++ G V++ + D+ YQ+VG QEA+++ +S +SP
Sbjct: 66 LNKQLQYAQIVQPA--DNDQLDIGKFVTIEFLDDHDQITYQLVGKQEANLEQQKISFTSP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
I +AL + D+++VNAP G +++ V
Sbjct: 124 IGQALANHTVDDVVTVNAPNGAYQVKVIAVK 154
>gi|322804996|emb|CBZ02556.1| transcription elongation factor GreA [Clostridium botulinum H04402
065]
Length = 154
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+
Sbjct: 2 KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L +I+ A VID + + + + N +V +A+ + L+S+
Sbjct: 62 QYLLTMISTASVIDEKNQDKSVLGVNSKCKIKFVEDEFETNVSLVTTMDAEPEKMLISVE 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL+GK++GD+ V+APG + T E+L+++
Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154
>gi|318056471|ref|ZP_07975194.1| transcription elongation factor GreA [Streptomyces sp. SA3_actG]
gi|318080242|ref|ZP_07987574.1| transcription elongation factor GreA [Streptomyces sp. SA3_actF]
gi|333026761|ref|ZP_08454825.1| putative transcription elongation factor GreA [Streptomyces sp.
Tu6071]
gi|332746613|gb|EGJ77054.1| putative transcription elongation factor GreA [Streptomyces sp.
Tu6071]
Length = 165
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + ++++++EL + R I K I EAR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNRLKEELEYLSGPARTEIAKKIEEAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + G + G V++ + + D + + + A S S
Sbjct: 70 LTQLLQHAKVGEAPADDG-IVEPGMVVTIAFDGDEDDTLTFLMASREYASSDIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
P+ + GK++GD P G+K + +IL
Sbjct: 129 PLGTGVNGKKVGDTAEYELPNGKKASVKILD 159
>gi|86742583|ref|YP_482983.1| GreA/GreB family elongation factor [Frankia sp. CcI3]
gi|86569445|gb|ABD13254.1| GreA/GreB family elongation factor [Frankia sp. CcI3]
Length = 160
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T + +D+++ EL + R I I AR GDL EN Y AAKE Q E
Sbjct: 1 MTQQTWLTQEAYDRLRSELDYLTGPWRTEIATKIEAAREEGDLKENGGYHAAKEEQGKQE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +L +++ A+V + +G+ G V + + + + I ++ +
Sbjct: 61 ARIRQLTDLLRDAQVGEAPAATGE-AGPGTVVEVRFSGERETEKFLIGSREDHSTPIEVF 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
S +SP+ A+ G + G+ +S P G EI+ V
Sbjct: 120 SPASPLGGAVSGHKAGETVSYTLPNGRSAKVEIVSVS 156
>gi|15895695|ref|NP_349044.1| transcription elongation factor, greA [Clostridium acetobutylicum
ATCC 824]
gi|15025446|gb|AAK80384.1|AE007743_6 Transcription elongation factor, greA [Clostridium acetobutylicum
ATCC 824]
gi|325509845|gb|ADZ21481.1| Transcription elongation factor, greA [Clostridium acetobutylicum
EA 2018]
Length = 154
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 2/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T G K+++EL + + +R I +A+ AR+ GDLSENA+Y AAK+ Q++NE
Sbjct: 1 MSSKI-LTESGKKKLEEELEYLKTVKRAEIKEALKFARSQGDLSENADYSAAKDDQSMNE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ E+E+I+ V++ S+ + + + ++ + + +V E+D+++ V
Sbjct: 60 TRIQEIEDILKSCTVVE-SSENENVFDLNKKALVKFCDTDETEEVTLVSSVESDIKNMKV 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SI SP+ +AL EL V +P G E+L++L
Sbjct: 119 SIDSPLGKALYKSELNKRTLVQSPDGSYEVEVLKIL 154
>gi|254443766|ref|ZP_05057242.1| transcription elongation factor GreA domain protein
[Verrucomicrobiae bacterium DG1235]
gi|198258074|gb|EDY82382.1| transcription elongation factor GreA domain protein
[Verrucomicrobiae bacterium DG1235]
Length = 617
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
V+ ++K E ++ P +AI+EAR GDL EN+EY+ AK+ Q + R L
Sbjct: 462 VSKGSYEKAVAEFDDIVTKKIPENSQAIAEARELGDLKENSEYKMAKQDQQILMSRRNLL 521
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I RA++ D ++ + + I G V+L ++ G + Y ++G + D + ++S +P+
Sbjct: 522 EADIKRAQITDFTSATTETIGIGNIVTLKDEKDGSEVTYTLLGAWDGDPDNFIISYLTPL 581
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV-LWI 158
++++GK +GD +SV E I + +I
Sbjct: 582 GKSMLGKRIGDEVSVTVGSTENKLTITDITRYI 614
>gi|302519408|ref|ZP_07271750.1| transcription elongation factor greA [Streptomyces sp. SPB78]
gi|302428303|gb|EFL00119.1| transcription elongation factor greA [Streptomyces sp. SPB78]
Length = 165
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + ++++++EL + R I K I EAR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNRLKEELEYLSGPARTEIAKKIEEAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + G + G V++ + + D + + + A S S
Sbjct: 70 LTQLLQHAKVGEAPADDG-IVEPGMVVTIAFDGDEDDTLTFLMASREYASSDIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
P+ + GK++GD P G+K + +IL
Sbjct: 129 PLGTGVNGKKVGDTAEYELPNGKKASVKILA 159
>gi|148377651|ref|YP_001256527.1| transcription elongation factor greA [Mycoplasma agalactiae PG2]
gi|291320341|ref|YP_003515603.1| transcription elongation factor greA [Mycoplasma agalactiae]
gi|259647749|sp|A5IYH4|GREA_MYCAP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|148291697|emb|CAL59083.1| Transcription elongation factor greA [Mycoplasma agalactiae PG2]
gi|290752674|emb|CBH40647.1| Transcription elongation factor greA [Mycoplasma agalactiae]
Length = 163
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 88/156 (56%), Gaps = 2/156 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI ++ + ++K + E ERP + ++ EARA GDLSENAEY AA++ Q+ E R
Sbjct: 7 EKIYLSEETYNKYKNEYTELVTVERPAVQASLKEARAQGDLSENAEYDAARDRQSEVERR 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE I+ AE+ID + ++ GATV + + + I+G +++ +S
Sbjct: 67 ILELERILENAEIIDTKSAVQNKAGIGATVRYLNMKTNKELVVTIMGPHDSNPIENKISN 126
Query: 123 SSPIARALIGKE-LGDIISVNAPGGEKTYEILQVLW 157
SP+A+A++ +GD++ V P + ++L + +
Sbjct: 127 ESPVAQAIMEANGIGDVVEVEVPQ-KYNIKVLDISY 161
>gi|116493793|ref|YP_805527.1| transcription elongation factor GreA [Lactobacillus casei ATCC 334]
gi|116103943|gb|ABJ69085.1| transcription elongation factor GreA [Lactobacillus casei ATCC 334]
Length = 155
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 78/155 (50%), Gaps = 3/155 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T G ++QE+ + RP IK +++A A GD SENAEY AAK E
Sbjct: 1 MVTYHEITPTGLANLKQEVEDLKTI-RPAKIKNLADAAALGDRSENAEYSAAKRELRQLE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ L+ +I A+V + D G ++L + D Y++VG EA + +
Sbjct: 60 GRLRYLDKLIRYAKVTHPAA--SDIADIGNRITLKFDDDEDHATYELVGPAEAGMGQDKL 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+I+SP+ A+ GD ++V AP G ++ +
Sbjct: 118 AINSPLGAAIRQHHAGDTVTVTAPSGSYQVTLMNI 152
>gi|104773455|ref|YP_618435.1| transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|103422536|emb|CAI97129.1| Transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
Length = 153
Score = 127 bits (319), Expect = 7e-28, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ + +RPR ++ + EARA GDLSEN EY AK +
Sbjct: 1 MVYYQKMTPEGYKQIEDEIAALKA-DRPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G +
Sbjct: 60 SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGKL 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ AL+ + GD + V AP G+ IL V
Sbjct: 118 PFDSPLGHALMKHKAGDRVKVKAPMGDYEVTILSVK 153
>gi|21223338|ref|NP_629117.1| transcription elongation factor GreA [Streptomyces coelicolor
A3(2)]
gi|256785558|ref|ZP_05523989.1| transcription elongation factor GreA [Streptomyces lividans TK24]
gi|289769454|ref|ZP_06528832.1| transcription elongation factor greA [Streptomyces lividans TK24]
gi|25453008|sp|Q9ADK2|GREA_STRCO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|20520966|emb|CAD30950.1| putative transcription elongation factor [Streptomyces coelicolor
A3(2)]
gi|289699653|gb|EFD67082.1| transcription elongation factor greA [Streptomyces lividans TK24]
Length = 165
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + ++K+++EL + R I I+ AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNKLKEELEYLTGPARTEISAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + G +A G V++ + + D + + + A S S
Sbjct: 70 LTQLLESAKVGEAPAADG-VVAPGMVVTIAFDGDEDDTLTFLLASREYASSDIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGE-KTYEILQ 154
P+ ++G ++GD P G+ + IL+
Sbjct: 129 PLGSGVLGHKVGDDAQYELPNGKPASVRILK 159
>gi|171463505|ref|YP_001797618.1| transcription elongation factor GreB [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171193043|gb|ACB44004.1| transcription elongation factor GreB [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 168
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 8/166 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K +T G+++I+ EL +R ++K + A + GD SEN +Y K+ +
Sbjct: 1 MEEKNYITLAGYERIKTELLQLLNLDRLEVVKVVHWAASNGDRSENGDYIYGKKRLREID 60
Query: 61 GRMAELENIITRAEVIDIS-----TMSGDRIAFGATVSLVEK---NSGDKKNYQIVGDQE 112
R+ L + A V+D S D++ FGA+V+ +G + + IVG E
Sbjct: 61 RRIRFLNKRLEFAIVVDNSARKSGENDADQVFFGASVTYSALEGPEAGKRTSITIVGVDE 120
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
D+ VS SPIA+ALI +GD + + P G EIL V ++
Sbjct: 121 VDLDKSHVSWVSPIAKALIKSRIGDCVFIQTPTGPTEIEILDVQYL 166
>gi|288917982|ref|ZP_06412341.1| transcription elongation factor GreA [Frankia sp. EUN1f]
gi|288350637|gb|EFC84855.1| transcription elongation factor GreA [Frankia sp. EUN1f]
Length = 161
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 1/157 (0%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T + +D+++ EL + R I I AR GDL EN Y AAKE Q E
Sbjct: 1 MTQQTWLTQEAYDRLRSELEYLTGTWRTEIATKIEAAREEGDLRENGGYHAAKEEQGKQE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ +L +++ A V + + G V + + + + I ++ +
Sbjct: 61 ARIRQLMDLLRDARVGETAPAVSGEAGPGMIVEIRFPGEKETEKFLIGSREDHSTSIEVF 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
S +SP+ A+ G + G+ ++ P G EI+ V
Sbjct: 121 SPASPLGGAVTGHKAGETVNYTLPNGRSAAVEIVAVS 157
>gi|183221706|ref|YP_001839702.1| fused transcript cleavage factor/unknown domain fusion protein
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Paris)']
gi|189911782|ref|YP_001963337.1| transcript cleavage factor/unknown domain fusion protein
[Leptospira biflexa serovar Patoc strain 'Patoc 1
(Ames)']
gi|167776458|gb|ABZ94759.1| greA transcription elongation factor-related protein [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Ames)']
gi|167780128|gb|ABZ98426.1| Transcriptional elongation factor, GreA/GreB family [Leptospira
biflexa serovar Patoc strain 'Patoc 1 (Paris)']
Length = 921
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 49/153 (32%), Positives = 82/153 (53%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + VT + F+ + E E + I EA+ GDL ENAEY+AA E Q +
Sbjct: 759 DVVLVTRRAFNAKKLEFEHLVNVEMAENSRDIGEAQEKGDLRENAEYKAAMEKQAQLQAA 818
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LE + A ++D+S + +++ G TV L K +G+ Y I+G +AD + ++S
Sbjct: 819 IKRLEAELKSARILDLSDVKTEKVGIGTTVRLKNKQTGESVTYSILGAWDADTEKNIISY 878
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+A++L+GK G+ ++ E YE+L +
Sbjct: 879 QSPLAKSLLGKHTGNEATLVFGSTETVYEVLDI 911
>gi|187934761|ref|YP_001886308.1| transcription elongation factor GreA [Clostridium botulinum B str.
Eklund 17B]
gi|187722914|gb|ACD24135.1| transcription elongation factor GreA [Clostridium botulinum B str.
Eklund 17B]
Length = 154
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 79/150 (52%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +++EL +R +R I K A A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENMKNLREELDYRLTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
N+I+ A +ID T+ + + + D+ +V + D ++ +SI S +
Sbjct: 65 MNMISTATIIDSETIDKSVLGINSKAKIKFIEDEDETIITLVTTMDLDPEAMRISIESDL 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+AL GK+ GDI+ VNAPG EIL++L
Sbjct: 125 GKALTGKKQGDIVEVNAPGENYKVEILEIL 154
>gi|84497875|ref|ZP_00996672.1| putative transcription elongation factor [Janibacter sp. HTCC2649]
gi|84381375|gb|EAP97258.1| putative transcription elongation factor [Janibacter sp. HTCC2649]
Length = 162
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 4/150 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + FD+++ EL R I+ I AR GDL EN Y AA+E Q NE R+ +
Sbjct: 10 YLTQEAFDRLKAELEELSGPGRADIVAKIEAAREEGDLKENGGYHAAREEQGKNEARIRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++ A +I + + G V++ + GD++ + + + AD + S SP
Sbjct: 70 LTQLLENA-IIGETPPDDGIVEPGMLVTV--EIFGDEETFLLGSREIADGSLQVYSEQSP 126
Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQ 154
I A+ GK+ GD ++ AP G+ +IL
Sbjct: 127 IGSAVNGKKAGDSVTYEAPNGKQIDVKILS 156
>gi|313123017|ref|YP_004033276.1| transcription elongation factor grea [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312279580|gb|ADQ60299.1| Transcription elongation factor GreA [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 153
Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ + +RPR ++ + EARA GDLSEN EY AK +
Sbjct: 1 MVYYQKMTPEGYKQIEDEIAVLKA-DRPRRVQNLKEARALGDLSENTEYSTAKRELRHLD 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + AEVI+ T++ ++ G V + ++ + + Y+IVG E V G +
Sbjct: 60 SRVRYLNKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGKL 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ AL+ + GD ++V AP G+ IL V
Sbjct: 118 PFDSPLGHALMKHKAGDRVTVEAPMGDYEVTILSVK 153
>gi|28211542|ref|NP_782486.1| transcription elongation factor greA [Clostridium tetani E88]
gi|28203983|gb|AAO36423.1| transcription elongation factor greA [Clostridium tetani E88]
Length = 154
Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 47/151 (31%), Positives = 81/151 (53%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T + +K+++EL +R +R I K EA A+GD SENAEY+ A N+ R+
Sbjct: 2 KNILTEENMNKLKEELEYRMTTKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L +I+ A VID + + + + N +V +A+ + +S+
Sbjct: 62 QYLLTMISTASVIDEKNQDKSVLGVNSKCKIKFVEDDFETNVSLVTTMDAEPEKMHISVE 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
S + +AL+GK++GD++ V APG + T E+L+
Sbjct: 122 SDLGKALMGKKVGDVVEVYAPGEKYTVEVLE 152
>gi|111225557|ref|YP_716351.1| transcription elongation factor GreA [Frankia alni ACN14a]
gi|111153089|emb|CAJ64836.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Frankia alni ACN14a]
Length = 163
Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 2/155 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T + +D+++ EL + R I I AR GDL EN Y AAKE Q E
Sbjct: 5 TQQTWLTQEAYDRLRSELDYLTGPWRTEIATKIEAAREEGDLKENGGYHAAKEEQGKQEA 64
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L +++ A+V + S + G V + + + + I ++ + S
Sbjct: 65 RIRQLSDLLRDAQVGE-SPATTGEAGPGTVVEVRFPGEQETEKFLIGSREDHSAPIDVFS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
+SP+ A+ G + G+ +S P G EI+ V
Sbjct: 124 PASPLGGAVNGHKAGETVSYTLPNGRSAKVEIVSV 158
>gi|328884670|emb|CCA57909.1| Transcription elongation factor GreA [Streptomyces venezuelae ATCC
10712]
Length = 165
Score = 126 bits (318), Expect = 9e-28, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNKLKDELEYLSGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + G + G V++ + + D + + + A S S
Sbjct: 70 LTQLLQHAKVGEAPADDG-VVEPGMVVTIAFDGDENDTMTFLLASREYASGDIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
P+ + GK+ GD P G+K T +IL
Sbjct: 129 PLGVGVNGKKAGDDAQYELPNGKKATVKILS 159
>gi|299135877|ref|ZP_07029061.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
gi|298602001|gb|EFI58155.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
Length = 156
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 89/146 (60%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
++++++ + E + I +A A GDLSENAEY +AK+ Q R+ +L+ +
Sbjct: 6 KALEEQIKALEYELTTELPAEIKKAVALGDLSENAEYHSAKQRQEFVNARLGQLKKRMGE 65
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
++++ + D++ FG+T+ + + ++ Y++V +EADV GL+S +SPI RAL+G
Sbjct: 66 LAMVNLDNIPRDKVGFGSTIVVFDSTKDEEITYKLVTSEEADVTKGLISTTSPIGRALLG 125
Query: 133 KELGDIISVNAPGGEKTYEILQVLWI 158
KE+GD +V P G++ E+L++ I
Sbjct: 126 KEIGDTATVVTPNGKRELEVLKLTTI 151
>gi|94967583|ref|YP_589631.1| GreA/GreB family elongation factor [Candidatus Koribacter
versatilis Ellin345]
gi|94549633|gb|ABF39557.1| GreA/GreB family elongation factor [Candidatus Koribacter
versatilis Ellin345]
Length = 156
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 51/152 (33%), Positives = 90/152 (59%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K+QQE+ + E + + + +A A GDLSENAEY AK+ Q R+ ++
Sbjct: 1 MTDHIRQKLQQEIEVLEHELQHELPAELKKAVAMGDLSENAEYHMAKQRQEFVRARLGQM 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +++++ + DR A G+T+ + + +K +Y++V +E+DV GL+S +SPI
Sbjct: 61 KRRMAELSLVNMANIPKDRAAIGSTLKVHDLTKDEKIDYKLVTSEESDVSKGLISTTSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
RAL+ K GD++ V P G++ EIL++ I
Sbjct: 121 GRALLNKREGDVVEVVTPAGKRELEILKLTTI 152
>gi|308189955|ref|YP_003922886.1| transcription elongation factor [Mycoplasma fermentans JER]
gi|319777236|ref|YP_004136887.1| transcription elongation factor [Mycoplasma fermentans M64]
gi|238809906|dbj|BAH69696.1| hypothetical protein [Mycoplasma fermentans PG18]
gi|307624697|gb|ADN69002.1| transcription elongation factor [Mycoplasma fermentans JER]
gi|318038311|gb|ADV34510.1| Transcription elongation factor [Mycoplasma fermentans M64]
Length = 163
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 88/157 (56%), Gaps = 3/157 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI + + +K Q E + ERP I A+ EARA GDLSENAEY AA++ Q + E R
Sbjct: 7 EKIILAKETLEKYQAEYEHLIKVERPEIQAALKEARAQGDLSENAEYDAARDRQGIVEAR 66
Query: 63 MAELENIITRAEVIDISTMSGD--RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ ELE I+ AEVI+ + + GATV + + + +I+G +++ G +
Sbjct: 67 IVELEGILANAEVIETNQNKKGKLKAGIGATVKYLNLKTNKEITVKIMGIHDSNPMEGNI 126
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S SP+A+A++ + G + V+ P + + +IL + +
Sbjct: 127 SNESPVAQAIMEGDEGATVEVDVPN-KYSIKILSIQY 162
>gi|162447758|ref|YP_001620890.1| transcription elongation factor GreA [Acholeplasma laidlawii PG-8A]
gi|229485767|sp|A9NGN4|GREA_ACHLI RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|161985865|gb|ABX81514.1| transcription elongation factor [Acholeplasma laidlawii PG-8A]
Length = 158
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 4/159 (2%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M K +T G D+++ EL + +R ++A+ EAR GDLSENA+Y AA+ Q
Sbjct: 1 MASKKVYELTQSGLDQLKDELTHLKDVKRVENLEALKEAREQGDLSENADYDAARNEQAR 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ E+E+I+ ++I + + G V L Y +VG EAD ++
Sbjct: 61 IEARILEIESILKNVKIIR-TNDDSTTVNIGKKVLLHFVEKNKDVEYHVVGTIEADPKNF 119
Query: 119 LVSISSPIARALIGKELGDIISVN-APGGEKTYEILQVL 156
+SI SP+ RA+ GKE+GD++ + A + EI +
Sbjct: 120 KISIESPLGRAIKGKEVGDLVQIKSATNKQSNVEIKAIS 158
>gi|154504438|ref|ZP_02041176.1| hypothetical protein RUMGNA_01942 [Ruminococcus gnavus ATCC 29149]
gi|153795213|gb|EDN77633.1| hypothetical protein RUMGNA_01942 [Ruminococcus gnavus ATCC 29149]
Length = 167
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K +T KIQQE+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE
Sbjct: 1 MREK--LTQSDVKKIQQEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKEKNRNE 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE ++ A +++ + D + TV + ++ + + Y+IV +GL+
Sbjct: 59 SRIRYLERMLKTAVIVEDHSG-ADEVGLNNTVQVYCEDDDELETYRIVTSVRGSSLNGLI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
SI SPI +AL+G ++GD + V Y +++
Sbjct: 118 SIESPIGKALLGHKVGDRVFVKVNDEFGYYVVIK 151
>gi|256827725|ref|YP_003151684.1| transcription elongation factor GreA [Cryptobacterium curtum DSM
15641]
gi|256583868|gb|ACU95002.1| transcription elongation factor GreA [Cryptobacterium curtum DSM
15641]
Length = 156
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 5/159 (3%)
Query: 1 MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M D+ + T +G K+++EL + + E+R + I AR +GD+SEN+EY AK Q L
Sbjct: 1 MADQSYILTEEGKQKLEEELHYLETEKRAEVGARIKVAREFGDISENSEYDDAKNEQGLL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+AE+ I++ A V+ S ++ G+TV++ G ++ + IVG E++V+ G
Sbjct: 61 EARIAEINRILSEATVVAAPKRS-SKVGIGSTVTVA--IGGSQRVFNIVGAAESNVREGR 117
Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+S SP+ ALIG + GD + P G E I ++
Sbjct: 118 ISNESPVGSALIGHKKGDTVVAEGPTGREVKMTIEKIEH 156
>gi|300856704|ref|YP_003781688.1| putative transcription elongation factor [Clostridium ljungdahlii
DSM 13528]
gi|300436819|gb|ADK16586.1| predicted transcription elongation factor [Clostridium ljungdahlii
DSM 13528]
Length = 154
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 1/153 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + +T G K++ EL + + +R I A+ ARA GDLSENA+Y AAK+ Q++ E
Sbjct: 1 MQDVILTESGKKKLEDELEYLKTVKRVEIKLALKAARAQGDLSENADYDAAKDDQSMTET 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ELE + A +I+ S+ D T + + + + +V EADV++ +S
Sbjct: 61 RIQELEAQLKNAVIIESSS-EADVFDINKTALVKFCDVDETEEVTLVSTVEADVKNMKIS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
I SP+ +AL ++G +V +P G ++ +
Sbjct: 120 IESPLGKALYKLKVGQKATVASPDGSYDVQVEK 152
>gi|85708976|ref|ZP_01040042.1| transcription elongation factor [Erythrobacter sp. NAP1]
gi|85690510|gb|EAQ30513.1| transcription elongation factor [Erythrobacter sp. NAP1]
Length = 147
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 2/146 (1%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
++ ERP I++ +S A GD SEN +Y ++ + + L +
Sbjct: 2 AALKARYDHLLGTERPEIVEIVSWAAGNGDRSENGDYIYGRKRMREIDRELGYLSRRMKA 61
Query: 73 AEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
V+D + R+ FGATV L +++ +++ IVGD E D GLV SSPIA+AL
Sbjct: 62 CRVVDPANQPDRSRVFFGATVELADEDD-ERRTVTIVGDDEQDAGKGLVGWSSPIAKALK 120
Query: 132 GKELGDIISVNAPGGEKTYEILQVLW 157
G +GD+ V PGG K +E++ + +
Sbjct: 121 GASVGDLRIVKLPGGLKEWEVMGIDY 146
>gi|168178054|ref|ZP_02612718.1| transcription elongation factor GreA [Clostridium botulinum NCTC
2916]
gi|170755319|ref|YP_001780312.1| transcription elongation factor GreA [Clostridium botulinum B1 str.
Okra]
gi|169120531|gb|ACA44367.1| transcription elongation factor GreA [Clostridium botulinum B1 str.
Okra]
gi|182671032|gb|EDT83006.1| transcription elongation factor GreA [Clostridium botulinum NCTC
2916]
Length = 154
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 86/153 (56%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+
Sbjct: 2 KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L +I+ A VID + + + + N +V +A+ ++ L+S+
Sbjct: 62 QYLLTMISTASVIDEKNQDKSVLGVNSKAKIKFVEDEFETNVSLVTTMDAEPENMLISVE 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL+GK++GD+ V+APG + T E+L+++
Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154
>gi|302553811|ref|ZP_07306153.1| transcription elongation factor greA [Streptomyces
viridochromogenes DSM 40736]
gi|302471429|gb|EFL34522.1| transcription elongation factor greA [Streptomyces
viridochromogenes DSM 40736]
Length = 165
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNKLKAELEYLTGPARAEISAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + G +A G V++ + + D + + + A S S
Sbjct: 70 LTQLLESAKVGEAPAADG-AVAPGMVVTIAFDGDEDDTLTFLLASREYASADIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
P+ +IG ++G+ P G+K + +IL+
Sbjct: 129 PLGAGVIGHKVGEDAEYELPNGKKASVKILK 159
>gi|123430789|ref|XP_001307960.1| transcription elongation factor [Trichomonas vaginalis G3]
gi|121889615|gb|EAX95030.1| transcription elongation factor, putative [Trichomonas vaginalis
G3]
Length = 150
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 79/139 (56%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I T +G +KI+ E+ + + R + + I A YGDLSEN+EY AK Q E R+A
Sbjct: 12 IFFTPEGLEKIENEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQVEERIA 71
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LE ++ A++ID ++ D + G++V + E ++ ++ Y IVG EAD G +S S
Sbjct: 72 KLEMMVRNAKIIDEKDLNTDVVNIGSSVKVRELDTMEEDEYTIVGSAEADPLEGKISNES 131
Query: 125 PIARALIGKELGDIISVNA 143
P+ LIG GD++ V
Sbjct: 132 PVGSKLIGNRAGDVVEVEV 150
>gi|255282088|ref|ZP_05346643.1| transcription elongation factor GreA [Bryantella formatexigens DSM
14469]
gi|255267407|gb|EET60612.1| transcription elongation factor GreA [Bryantella formatexigens DSM
14469]
Length = 191
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 52/148 (35%), Positives = 82/148 (55%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KI++E+ +R+ R I A+ EARA GDLSEN EY AAK +N NE R+ L
Sbjct: 29 LTRSDVRKIEEEIEYRKLVVRKEAIAAVKEARAQGDLSENFEYYAAKRDKNKNESRIRYL 88
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A V+ + G+ + TV + ++ + + Y+IV + SG +SI SP+
Sbjct: 89 ERMLKTARVVSDVSRDGE-VGLNNTVEVYFEDDDETETYKIVTSIRGNSMSGKISIESPM 147
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
RAL+GK+ GD + V Y +++
Sbjct: 148 GRALLGKKAGDRVYVKVNENAGYYVVIK 175
>gi|159898200|ref|YP_001544447.1| transcription elongation factor GreA [Herpetosiphon aurantiacus
ATCC 23779]
gi|159891239|gb|ABX04319.1| transcription elongation factor GreA [Herpetosiphon aurantiacus
ATCC 23779]
Length = 155
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 85/157 (54%), Gaps = 3/157 (1%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK +T +G K++ E+ + R + + I +A+ GD+SE+ EY+ AK Q
Sbjct: 1 MTDKPFYLTKEGRAKLEAEIEELETTGRMEVAERIRQAKELGDISESGEYEDAKNKQAFL 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ E+ NI+ A++I+ + G++V++ ++ G+++ + IVG EA + G
Sbjct: 61 EGRIREIRNILNNAQMIEED-GDNREVRLGSSVTIRYED-GEEEEWMIVGAAEASPRDGK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPI AL+GK + + P G +L++
Sbjct: 119 ISNESPIGSALMGKRARQKATASTPSGIMKMTVLKIR 155
>gi|256851960|ref|ZP_05557347.1| transcription elongation factor GreB [Lactobacillus jensenii
27-2-CHN]
gi|260661470|ref|ZP_05862383.1| transcription elongation factor GreB [Lactobacillus jensenii
115-3-CHN]
gi|282931733|ref|ZP_06337221.1| transcription elongation factor GreA 1 [Lactobacillus jensenii
208-1]
gi|297205169|ref|ZP_06922565.1| transcription elongation factor GreA [Lactobacillus jensenii
JV-V16]
gi|256615372|gb|EEU20562.1| transcription elongation factor GreB [Lactobacillus jensenii
27-2-CHN]
gi|260547925|gb|EEX23902.1| transcription elongation factor GreB [Lactobacillus jensenii
115-3-CHN]
gi|281304176|gb|EFA96290.1| transcription elongation factor GreA 1 [Lactobacillus jensenii
208-1]
gi|297149747|gb|EFH30044.1| transcription elongation factor GreA [Lactobacillus jensenii
JV-V16]
Length = 153
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ I++E+ ++ +RP IKA+ EAR+ GDLSEN+EY AK+ E
Sbjct: 1 MVYFQKMTPQGYKLIEEEIANLKK-KRPIKIKALQEARSLGDLSENSEYTEAKKELRHLE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L+ + AE+I + ++ G V L ++ Y+IVG EA++++G +
Sbjct: 60 SRLRYLDKQLKYAEII--TPNDDKKVDLGKKVKLRFEDDETSDTYEIVGRLEANLEAGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ A++ KE G ++V AP G I VL
Sbjct: 118 SFDSPLGAAIMKKEAGTCVTVEAPAGSYEVTIEDVL 153
>gi|254555375|ref|YP_003061792.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1]
gi|308179372|ref|YP_003923500.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ST-III]
gi|254044302|gb|ACT61095.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1]
gi|308044863|gb|ADN97406.1| transcription elongation factor GreA [Lactobacillus plantarum
subsp. plantarum ST-III]
Length = 156
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T+ G+ I+QE+ +Q +RP I+ ++ A A GD SENAEY +AK E R+
Sbjct: 7 KMTATGYHAIEQEIEDLKQ-QRPERIRILAAAAALGDRSENAEYSSAKRDLGRLESRLRY 65
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + A+++ + +++ G V++ + D+ YQ+VG QEA+++ +S +SP
Sbjct: 66 LNKQLQYAQIVQPA--DNNQLDIGKFVTIEFLDDHDQITYQLVGKQEANLEQQKISFTSP 123
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
I +AL + D+++VNAP G +++ V
Sbjct: 124 IGQALANHTVDDVVTVNAPNGAYQVKVIAVK 154
>gi|196231612|ref|ZP_03130470.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
gi|196224465|gb|EDY18977.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
Length = 609
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 79/147 (53%)
Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
+ +K + E ++ P +K I AR+YGDL EN E++AAKE+Q + R AE E
Sbjct: 459 ESMEKKKAEYDDLVNKKIPENVKEIQVARSYGDLRENFEFKAAKEMQRVLSRRRAETERD 518
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ +A D + +++ G V+L E G Y I+G + D G+VS S +A+A
Sbjct: 519 LAQARGTDFANPDTAQVSVGTIVTLKETGDGRTDVYTILGAWDGDPDKGIVSYQSALAQA 578
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156
LIG + G+ ++V G++T I ++
Sbjct: 579 LIGHKPGEQVNVPTEHGDRTARIEKIE 605
>gi|259502254|ref|ZP_05745156.1| transcription elongation factor GreA 1 [Lactobacillus antri DSM
16041]
gi|259169872|gb|EEW54367.1| transcription elongation factor GreA 1 [Lactobacillus antri DSM
16041]
Length = 168
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 3/150 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+ +I+ E+ Q +RP I+ + ARA GDLSEN EY AK E R+
Sbjct: 17 KMTRAGYQEIEDEIARLQA-QRPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRY 75
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + AE+I + + + G +V+L ++ D Y+IVG QEAD+ V+ SP
Sbjct: 76 LNKQLQYAEII--APTNAGTVDLGTSVTLRFEDDDDVATYRIVGKQEADLAKQKVAFDSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ +A++ + G ++V AP I+++
Sbjct: 134 LGQAIMHQRAGTTVTVQAPQAPYQVTIIKI 163
>gi|331700830|ref|YP_004397789.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL
B-30929]
gi|329128173|gb|AEB72726.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL
B-30929]
Length = 155
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 80/139 (57%), Gaps = 3/139 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+++I+ E+R + RP IK++++ARA GDLSENAEY AAK E R+
Sbjct: 7 KITKFGYEQIESEIRELEN-SRPAKIKSLADARALGDLSENAEYSAAKRDLRHLESRLRF 65
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + A+V + + D + G TV + + Y+IVG E D+ G +SI+SP
Sbjct: 66 LRKQLQYAQV--YTPSNNDTVEVGKTVKFEFLDDHSTETYEIVGTPEVDIDHGKISIASP 123
Query: 126 IARALIGKELGDIISVNAP 144
I AL+ GDI++V+AP
Sbjct: 124 IGSALLNHHSGDIVTVSAP 142
>gi|153941346|ref|YP_001390030.1| transcription elongation factor GreA [Clostridium botulinum F str.
Langeland]
gi|152937242|gb|ABS42740.1| transcription elongation factor GreA [Clostridium botulinum F str.
Langeland]
gi|295318115|gb|ADF98492.1| transcription elongation factor GreA [Clostridium botulinum F str.
230613]
Length = 154
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+
Sbjct: 2 KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L +I+ A VID + + + + N +V +A+ + L+S+
Sbjct: 62 QYLLTMISTASVIDEKNQDKSVLGVNSKAKIKFVEDEFETNVSLVTTMDAEPEKMLISVE 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL+GK++GD+ V+APG + T E+L+++
Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154
>gi|261879064|ref|ZP_06005491.1| transcription elongation factor GreA [Prevotella bergensis DSM
17361]
gi|270334344|gb|EFA45130.1| transcription elongation factor GreA [Prevotella bergensis DSM
17361]
Length = 155
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 89/151 (58%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +G+DK+ +L + ERP+ AI+EA GDLSEN+EY+AAKE Q E ++ E
Sbjct: 3 YMSKEGYDKLVAQLHQLEAIERPKASAAIAEAADKGDLSENSEYEAAKEAQVHLENKINE 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ I +A+++D+S +S D + + V + + K Y IV + EA+++ +SI +P
Sbjct: 63 MKMTIAQAKIVDMSRLSADEVQIMSKVEMTNLATKKKMTYTIVSESEANLKENKISIHTP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
IA+ L+ K++G+ + + P G I +
Sbjct: 123 IAQGLLNKKVGEEVEIKVPRGTLKLRIDNIS 153
>gi|271969724|ref|YP_003343920.1| GreA/GreB family elongation factor [Streptosporangium roseum DSM
43021]
gi|270512899|gb|ACZ91177.1| GreA/GreB family elongation factor [Streptosporangium roseum DSM
43021]
Length = 166
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 3/155 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D+++ E + R I K I AR GDL EN Y AAK+ Q E R+
Sbjct: 11 WLTQEAYDRLKAEFEYLSGPGRVDIAKKIEAAREEGDLKENGGYHAAKDEQGKMEARIFH 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L II A V + G + G TV++ + ++ + + +E+ + S SP
Sbjct: 71 LRQIIDSARVGEAPRTEG-VVGPGMTVTVRFEGDDEEVAFLLASREESGAPIDVYSPKSP 129
Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQ-VLWI 158
+ A+ GK++G+ + P G T EIL+ V +I
Sbjct: 130 LGSAINGKKIGEKATYTMPNGRSNTVEILEAVPYI 164
>gi|322437290|ref|YP_004219502.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX9]
gi|321165017|gb|ADW70722.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX9]
Length = 173
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 88/146 (60%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
K+ +E++ + E + I +A A GDLSENAEY AK+ Q R+ +L+ +
Sbjct: 7 AKLAEEIKALEYELTTELPAEIKKAVALGDLSENAEYHMAKQRQVFVNARLGQLKKRMGE 66
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
+++++ + D+ FG+ +++ + ++ YQ+V +E+DV GL+S +SPI RAL+
Sbjct: 67 LAMVNLANIPHDKTGFGSRITVFDSTKDEEIVYQLVTSEESDVSKGLISTTSPIGRALLN 126
Query: 133 KELGDIISVNAPGGEKTYEILQVLWI 158
KE+GD ++V P G++ E+L++ I
Sbjct: 127 KEVGDTVTVVTPNGKRELEVLKLATI 152
>gi|238855578|ref|ZP_04645880.1| transcription elongation factor GreA [Lactobacillus jensenii 269-3]
gi|260664770|ref|ZP_05865621.1| transcription elongation factor GreB [Lactobacillus jensenii
SJ-7A-US]
gi|282932736|ref|ZP_06338144.1| transcription elongation factor GreA 1 [Lactobacillus jensenii
208-1]
gi|238831795|gb|EEQ24130.1| transcription elongation factor GreA [Lactobacillus jensenii 269-3]
gi|260561253|gb|EEX27226.1| transcription elongation factor GreB [Lactobacillus jensenii
SJ-7A-US]
gi|281303146|gb|EFA95340.1| transcription elongation factor GreA 1 [Lactobacillus jensenii
208-1]
Length = 153
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 88/156 (56%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ I++E++ ++ RP IKA+ EAR+ GDLSEN+EY AK+ E
Sbjct: 1 MVYFQKMTPQGYKLIEEEIKNLKK-SRPIKIKALQEARSLGDLSENSEYTEAKKELRHLE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L+ + AE+I + ++ G V L ++ Y+IVG EAD+++G +
Sbjct: 60 SRLRYLDKQLKYAEII--TPNDDKKVDLGKKVKLRFEDDETSDTYEIVGRLEADLEAGKI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ A++ KE G ++V AP G I +VL
Sbjct: 118 SFDSPLGVAIMKKEAGSCVTVEAPAGSYEVTIEEVL 153
>gi|117929094|ref|YP_873645.1| transcription elongation factor GreA [Acidothermus cellulolyticus
11B]
gi|117649557|gb|ABK53659.1| transcription elongation factor GreA [Acidothermus cellulolyticus
11B]
Length = 162
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 2/141 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + ++++ E R I + I ARA GDL EN Y AAKE Q E R+ +
Sbjct: 9 WLTQEAYERLTAEYNHLIGPARAEIARKIEAARAEGDLRENGGYHAAKEEQGKMEARIRQ 68
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L I+ A+V + G + G V++ ++ G++ + + +E+ S +SP
Sbjct: 69 LRQILENAKVGEPPADDG-VVEPGMVVTVRYED-GEELTFLLGSREESAAGIEAFSPNSP 126
Query: 126 IARALIGKELGDIISVNAPGG 146
+ AL+GK +GD S P G
Sbjct: 127 LGSALLGKRVGDSASYTLPTG 147
>gi|39938788|ref|NP_950554.1| transcription elongation factor [Onion yellows phytoplasma OY-M]
gi|39721897|dbj|BAD04387.1| transcription elongation factor [Onion yellows phytoplasma OY-M]
Length = 170
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +KI +T G +K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L
Sbjct: 15 MNNKIYELTQSGIEKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 74
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD +
Sbjct: 75 EHRISEIQNILKNVRVVKVSKE--REVSIGKKVSLELLHTKQQQEIELVSTLEADPFNNK 132
Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+SI SP+ + + G ++GD++ V G +I+ V
Sbjct: 133 ISIESPLGQNIKGHQIGDVVFVTGETGNTFRVKIVDVQ 170
>gi|226947932|ref|YP_002803023.1| transcription elongation factor GreA [Clostridium botulinum A2 str.
Kyoto]
gi|226844208|gb|ACO86874.1| transcription elongation factor GreA [Clostridium botulinum A2 str.
Kyoto]
Length = 154
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 86/153 (56%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+
Sbjct: 2 KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L +I+ A VID + + + + N +V +A+ ++ L+S+
Sbjct: 62 QYLLTMISTASVIDEKNQDKSVLGVNSKAKIKFVEDEFETNVSLVTTMDAEPENMLISVE 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL+GK++GD+ V+APG + T E+++++
Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVIEII 154
>gi|320109162|ref|YP_004184752.1| GreA/GreB family elongation factor [Terriglobus saanensis SP1PR4]
gi|319927683|gb|ADV84758.1| GreA/GreB family elongation factor [Terriglobus saanensis SP1PR4]
Length = 157
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 90/146 (61%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
K++++++ + E + I A A GDLSENAEY +AK+ Q + +L+ +
Sbjct: 7 KKLEEQIKQLEYELTNELPAEIKRAVALGDLSENAEYHSAKQRQEFVNAHLGQLKKRMAE 66
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
+++++ + DRI FG+T+ + + ++ Y++V +E+DV GL+S +SPI R+L+G
Sbjct: 67 LSLVNLANIPHDRIGFGSTIVVFDTTKNEELTYKLVTSEESDVTQGLISTTSPIGRSLVG 126
Query: 133 KELGDIISVNAPGGEKTYEILQVLWI 158
K++GD ++V P G++ E+L++ I
Sbjct: 127 KQVGDTVTVVTPNGKRELEVLKLTTI 152
>gi|303232444|ref|ZP_07319136.1| putative transcription elongation factor GreA [Atopobium vaginae
PB189-T1-4]
gi|302481528|gb|EFL44596.1| putative transcription elongation factor GreA [Atopobium vaginae
PB189-T1-4]
Length = 157
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 56/155 (36%), Positives = 87/155 (56%), Gaps = 3/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++ +TS+G K+ EL WR+ E+ I++ + EAR +GDLSEN+EY AAKE Q+ NE R
Sbjct: 4 KELILTSEGRQKLVDELTWREGEKHEEIVERLKEARGFGDLSENSEYDAAKEEQSQNESR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+ I+ A+V++ ++ G V L++ + G + IVG E D + +S
Sbjct: 64 INEIRQILATAKVVEHMAGEL-TVSIGTKVKLID-DKGKTNTFTIVGTTETDSLAHKISN 121
Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
SP LIG +GD I P G+ K Y I ++
Sbjct: 122 ESPAGAELIGHVVGDSIEFATPAGKTKHYTITEIT 156
>gi|170759281|ref|YP_001786034.1| transcription elongation factor GreA [Clostridium botulinum A3 str.
Loch Maree]
gi|169406270|gb|ACA54681.1| transcription elongation factor GreA [Clostridium botulinum A3 str.
Loch Maree]
Length = 154
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 85/153 (55%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T + +K+++EL +R ++R I K EA A+GD SENAEY+ A N+ R+
Sbjct: 2 KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L +I+ A VID + + + + N +V +A+ + L+S+
Sbjct: 62 QYLLTMISTASVIDERNQDKSVLGVNSKAKIKFVEDEFETNVSLVTTMDAEPEKMLISVE 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S + +AL+GK++GD+ V+APG + T E+L+++
Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVLEII 154
>gi|296115084|ref|ZP_06833726.1| putative transcription elongation factor greB [Gluconacetobacter
hansenii ATCC 23769]
gi|295978421|gb|EFG85157.1| putative transcription elongation factor greB [Gluconacetobacter
hansenii ATCC 23769]
Length = 177
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 83/153 (54%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ KG + ++ EL ++ERPRI++ +S A GD SEN +Y K+ + R+
Sbjct: 18 YISPKGMEVLRHELNTLLRDERPRIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRF 77
Query: 66 LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L I +A ++D + ++ FGATV+ + + I+G EAD G +S+ S
Sbjct: 78 LTKRIEKAIIVDPAQQPRRGQVFFGATVTYA-TERDETRVVTIMGVDEADTVRGEISLIS 136
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+ARAL+ +GD + + P G++ E++ + +
Sbjct: 137 PVARALMRARVGDEVRLMTPRGDEMLEVMAISY 169
>gi|119963879|ref|YP_947068.1| transcription elongation factor GreA [Arthrobacter aurescens TC1]
gi|119950738|gb|ABM09649.1| putative transcription elongation factor GreA [Arthrobacter
aurescens TC1]
Length = 164
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 76/151 (50%), Gaps = 5/151 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + FD++Q EL R I++ I AR GDL EN Y AAKE Q E R+ +
Sbjct: 11 WLTQEAFDRLQAELDHLSGAGRAEIVQKIEAARQEGDLKENGGYHAAKEEQGKIEARIRQ 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124
L ++ A+V + G + G +V + +GD++ + + + A D + S S
Sbjct: 71 LTALLRDAQVGEAPADDG-IVEPGML--VVARIAGDEETFLLGSREIAGDSDLDVFSEKS 127
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154
P+ A+IG + GD +S AP G E EI+
Sbjct: 128 PLGAAIIGHKEGDSLSYVAPNGKEIQVEIVS 158
>gi|330950316|gb|EGH50576.1| transcription elongation factor GreA [Pseudomonas syringae Cit 7]
Length = 126
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 1/126 (0%)
Query: 34 ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG-DRIAFGATV 92
I AR GDL ENAEY AA+E Q + E R+ ++E + A +ID++T+ ++ FG TV
Sbjct: 1 IGTARELGDLKENAEYHAAREQQGMVEARIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTV 60
Query: 93 SLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
+ + + YQIVG+ EAD++ G +S+ SPIARALI KE GD++ V P G YEI
Sbjct: 61 EIANVETDESVVYQIVGEDEADIKKGKISVGSPIARALIAKEEGDVVVVKTPSGVIEYEI 120
Query: 153 LQVLWI 158
++V I
Sbjct: 121 IEVRHI 126
>gi|152002554|dbj|BAF73578.1| transcription elongation factor [Onion yellows phytoplasma OY-W]
Length = 170
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 51/158 (32%), Positives = 92/158 (58%), Gaps = 4/158 (2%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +KI +T G +K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L
Sbjct: 15 MNNKIYELTQSGIEKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 74
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD +
Sbjct: 75 EHRISEIQNILKNVRVVKVSKE--REVSIGKKVSLELLHTKQQQEIELVSTLEADPFTNK 132
Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+SI SP+ + + G ++GD++ V G +I+ V
Sbjct: 133 ISIESPLGKNIKGHQIGDVVFVTGETGNTFRVKIVDVQ 170
>gi|153855392|ref|ZP_01996541.1| hypothetical protein DORLON_02555 [Dorea longicatena DSM 13814]
gi|149752212|gb|EDM62143.1| hypothetical protein DORLON_02555 [Dorea longicatena DSM 13814]
Length = 167
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 88/148 (59%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KI++E+ +R+ R + ++A+ EARA GDLSEN EY+AAK+ +N NE R+ L
Sbjct: 5 LTESDVKKIKEEIEYRKIVVRKKELEAVKEARAQGDLSENFEYKAAKQDKNRNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A+++ ++ D + TV + ++ + + Y++V + GL+SI SP+
Sbjct: 65 ERMLKNAKIVSDTS-KADEVGINNTVEVYFEDDDETETYRLVTSIRGNSLQGLISIESPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+A+ G ++GD + V G + Y +++
Sbjct: 124 GKAIQGHKVGDRVLVKTNGNDGYYIVIK 151
>gi|239929251|ref|ZP_04686204.1| transcription elongation factor GreA [Streptomyces ghanaensis ATCC
14672]
gi|291437589|ref|ZP_06576979.1| transcription elongation factor greA [Streptomyces ghanaensis ATCC
14672]
gi|291340484|gb|EFE67440.1| transcription elongation factor greA [Streptomyces ghanaensis ATCC
14672]
Length = 165
Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 1/150 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNKLKDELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++ A+V + G + + D + + + A + S SP
Sbjct: 70 LTQLLENAKVGEAPAADGTVAPGMVVTIAFDGDEDDTLTFLLASREYASSEIETYSPQSP 129
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
+ +IG+++G+ P G+ + +IL+
Sbjct: 130 LGTGVIGRKVGENAEYELPNGKTASVKILK 159
>gi|154484187|ref|ZP_02026635.1| hypothetical protein EUBVEN_01898 [Eubacterium ventriosum ATCC
27560]
gi|149734664|gb|EDM50581.1| hypothetical protein EUBVEN_01898 [Eubacterium ventriosum ATCC
27560]
Length = 165
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 51/149 (34%), Positives = 83/149 (55%), Gaps = 1/149 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +KI++E+ R+ RP I+A+ EARA GDLSEN EY AAK+ +N NEGR+
Sbjct: 2 KLTQSDVEKIKEEIEHRKLVVRPEAIEAVKEARAQGDLSENFEYYAAKKDKNKNEGRIRY 61
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE ++ A +I + D + TV + ++ + + ++IV D SG +S SP
Sbjct: 62 LERVLKTATIISDESAD-DEVGLNNTVQVYFEDDDETETFKIVSTMRGDSISGRISGDSP 120
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQ 154
+ AL+G ++GD + V Y +++
Sbjct: 121 MGAALMGHKVGDRVEVKVNEKVSYYVVIK 149
>gi|325962607|ref|YP_004240513.1| transcription elongation factor GreA [Arthrobacter
phenanthrenivorans Sphe3]
gi|323468694|gb|ADX72379.1| transcription elongation factor GreA [Arthrobacter
phenanthrenivorans Sphe3]
Length = 164
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 5/151 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + FD+++ EL R I++ I +AR GDL EN Y AAKE Q E R+ +
Sbjct: 11 WLTQEAFDRLKAELDHLSGPGRAEIVQKIDQARQEGDLKENGGYHAAKEEQGKIEARIRQ 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124
L ++ A V + G + G +V + +GD++ + + + A D + S S
Sbjct: 71 LTVLLRDAHVGEAPADDG-IVEPGMI--VVARIAGDEETFLLGSREIAGDSDLDVFSEKS 127
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154
P+ A++G + G+ +S AP G + EIL
Sbjct: 128 PLGAAILGHKEGESLSYTAPNGKDIKVEILS 158
>gi|78484860|ref|YP_390785.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2]
gi|78363146|gb|ABB41111.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2]
Length = 154
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 54/153 (35%), Positives = 84/153 (54%), Gaps = 2/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +GF ++ +EL + + +RP I++AIS A A GD SENAEY K+ + ++
Sbjct: 3 YITQEGFYRLTEELSFLWKTKRPEIVRAISTAAAEGDRSENAEYIYRKKELRETDRKIRY 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + V+ D++ FGA L+E G +K Y+IVG EA + +S+ SP
Sbjct: 63 LERHLKDINVVRDKPRQRDKVFFGAY-VLLEDEDGQQKQYRIVGGIEARGEENEISVKSP 121
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+A+ALIGK L + V P + Y IL + +
Sbjct: 122 VAQALIGKLLDQDVEVLLPDNRKIHYTILDIKY 154
>gi|294155490|ref|YP_003559874.1| transcription elongation factor GreA [Mycoplasma crocodyli MP145]
gi|291600011|gb|ADE19507.1| transcription elongation factor GreA [Mycoplasma crocodyli MP145]
Length = 160
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 90/154 (58%), Gaps = 3/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI + + +K ++E ERP I A+ +ARA GDLSENAEY AA++ Q + EGR
Sbjct: 8 EKIFLAKETLEKYKKEYDHLVNVERPAIQAALKDARAQGDLSENAEYDAARDKQGVIEGR 67
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE+I+ +A +I+ S +I G+TV+ + I+G +A+ +S
Sbjct: 68 ITELESILDKAVIIETSK--DGKIGIGSTVTYFSHLDKQQHIVTIMGSHDANPFENKISN 125
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+A A++ +E G+ I V+AP + +IL+++
Sbjct: 126 ESPLAVAMLDREKGEKIEVDAPS-KYMIDILEIV 158
>gi|320008884|gb|ADW03734.1| transcription elongation factor GreA [Streptomyces flavogriseus
ATCC 33331]
Length = 165
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTPEAYNQLKAELEYLSGPARTEISVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + G + G V++ + + D + + + A S S
Sbjct: 70 LTQLLEHAKVGEAPADDG-VVEPGMVVTIAFDGDPDDTVTFLLASREYASADIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
P+ + GK GD P G+K T +I+
Sbjct: 129 PLGTGVNGKRTGDEAEYELPNGKKATVKIVS 159
>gi|302536479|ref|ZP_07288821.1| transcription elongation factor greA [Streptomyces sp. C]
gi|302445374|gb|EFL17190.1| transcription elongation factor greA [Streptomyces sp. C]
Length = 165
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +D+++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQAAYDQLKAELDYLSGPARTEIAMKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V SG+ +A G V++ + + D + + + A S S
Sbjct: 70 LTQLLENAKVGTAPAASGE-VAPGTLVTIAFDGDEDDTLEFLLASREYASDDFETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
P+ + GK++G+ P G+K T IL V
Sbjct: 129 PLGAGVNGKKVGEDAQYELPNGKKATVRILAVK 161
>gi|297192437|ref|ZP_06909835.1| transcription elongation factor [Streptomyces pristinaespiralis
ATCC 25486]
gi|197717974|gb|EDY61882.1| transcription elongation factor [Streptomyces pristinaespiralis
ATCC 25486]
Length = 165
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +++++ EL + R I K I AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNQLKAELEYLSGPARTEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + G + G V++ + + D + + + A S S
Sbjct: 70 LTQLLDNAKVGEAPADDG-VVEPGMVVTIAFDGDEDDTLTFLMASREYASADIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
P+ + GK++GD P G+K +IL
Sbjct: 129 PLGVGVNGKKVGDDAEYELPNGKKAAVKILA 159
>gi|194467226|ref|ZP_03073213.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23]
gi|194454262|gb|EDX43159.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23]
Length = 165
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T+ G+ +I++++ QQ +RP I+ + ARA GDLSEN EY AK E R+
Sbjct: 17 KMTANGYHEIEEQIAKLQQ-QRPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRY 75
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP
Sbjct: 76 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +AL+ K G ++V AP +I++V
Sbjct: 134 LGQALLHKTAGTTVTVEAPQSLYKVKIVKVE 164
>gi|254381990|ref|ZP_04997353.1| transcription elongation factor greA [Streptomyces sp. Mg1]
gi|194340898|gb|EDX21864.1| transcription elongation factor greA [Streptomyces sp. Mg1]
Length = 165
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +D+++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQAAYDQLKAELDYLSGPARTEIATKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + S +A G V + + + D + + + A + S S
Sbjct: 70 LTQLLENAKVG-TAPASDGVVAPGTLVKIAFDGDEDDTMEFLLASREYASSEFETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
P+ ++ K++G+ P G+K T +IL V
Sbjct: 129 PLGSGVLNKKIGEDAEYELPNGKKATVKILDVK 161
>gi|325283061|ref|YP_004255602.1| transcription elongation factor GreA [Deinococcus proteolyticus
MRP]
gi|324314870|gb|ADY25985.1| transcription elongation factor GreA [Deinococcus proteolyticus
MRP]
Length = 155
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 47/154 (30%), Positives = 87/154 (56%), Gaps = 4/154 (2%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
KI +T +G+D++++ L + R +I + + A GDL E+A Y A+ Q+ NE R+
Sbjct: 5 KISITQRGYDRLKETLHHLKTTRREQISENMGRAIEDGDLRESAAYDEARMEQSENEARI 64
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LE+ + RA +++ G + ++ ++ +++VG EADV++G VS +
Sbjct: 65 RDLEDQLERAVIVEEDAGGGAG----LGAKVKVRSGKTERTFELVGTFEADVRAGKVSDA 120
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPI +AL+G G + V P G+ +E+L+V +
Sbjct: 121 SPIGQALLGAREGAKVKVPGPKGDMEFEVLEVTY 154
>gi|312868578|ref|ZP_07728773.1| transcription elongation factor GreA [Lactobacillus oris
PB013-T2-3]
gi|311095875|gb|EFQ54124.1| transcription elongation factor GreA [Lactobacillus oris
PB013-T2-3]
Length = 168
Score = 124 bits (311), Expect = 6e-27, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+ +I+ E+ Q +RP I + ARA GDLSEN EY AK E R+
Sbjct: 17 KMTKAGYQEIEDEIARLQA-QRPAKIDQLKAARALGDLSENTEYSTAKRELRHLESRLRY 75
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + +E+I + ++ G TV+L + D YQIVG QEAD+ VS SP
Sbjct: 76 LNKQLQYSEIITPA--DAKQVDLGTTVTLRFDDDNDVVTYQIVGKQEADLAKQKVSFDSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ RA++ + ++V AP I+++
Sbjct: 134 LGRAIMHQPAATTVTVQAPQSSYQVTIIEIS 164
>gi|116669728|ref|YP_830661.1| GreA/GreB family elongation factor [Arthrobacter sp. FB24]
gi|116609837|gb|ABK02561.1| GreA/GreB family elongation factor [Arthrobacter sp. FB24]
Length = 164
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 5/151 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + FD+++ EL R I++ I AR GDL EN Y AAKE Q E R+ +
Sbjct: 11 WLTQEAFDRLKAELDHLSGAGRAEIVQKIEAARQEGDLKENGGYHAAKEEQGKIEARIRQ 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124
L ++ A V + S + G +V + +GD++ + + + A D + S S
Sbjct: 71 LTVLLRDAHVGE-SPADDGIVEPGMI--VVARIAGDEETFLLGSREIAGDSDLDVFSEKS 127
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154
P+ A++G + GD +S AP G + T EIL
Sbjct: 128 PLGSAIVGHKEGDKLSYTAPNGKDITVEILS 158
>gi|256833112|ref|YP_003161839.1| transcription elongation factor GreA [Jonesia denitrificans DSM
20603]
gi|256686643|gb|ACV09536.1| transcription elongation factor GreA [Jonesia denitrificans DSM
20603]
Length = 160
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 6/153 (3%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T + +D+++ EL R I I++AR GDL EN Y AA+E Q NE
Sbjct: 4 ANVTWLTQEAYDRLRAELDHLSGPARQEITNRIAQARDEGDLKENGGYHAAREEQGKNEA 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGLV 120
R+ ELE + + D + + + + +GD+ + + + AD +
Sbjct: 64 RIHELEEKLRNIRIGTPPD---DGVVEPGMIVVADV-AGDEMTFLLGSREIADTTDLDVY 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
S SP+ A+ G+++G+ + AP G + E++
Sbjct: 120 SEQSPLGSAINGRKVGESTAYTAPNG-RDIEVV 151
>gi|289178779|gb|ADC86025.1| GreA [Bifidobacterium animalis subsp. lactis BB-12]
Length = 203
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 54/153 (35%), Positives = 90/153 (58%), Gaps = 8/153 (5%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q+ NEGR+
Sbjct: 51 VLLTQEAYDKMKEELAHREGEYRDEITERIAAARAEGDLSENGGYQAAREEQSKNEGRIN 110
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSI 122
EL + A++I+ + G+ V++ + G++ Y I G ++ V + +S
Sbjct: 111 ELIVKLRNAKIIEAPK--AGEVGNGSLVTI--ELGGNEMQYVI-GSRDITVATDYDVISP 165
Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
SPI A+IG ++GD+++ AP G E + I +
Sbjct: 166 ESPIGGAIIGHKVGDVVTYKAPNGREISVTIKE 198
>gi|225028128|ref|ZP_03717320.1| hypothetical protein EUBHAL_02398 [Eubacterium hallii DSM 3353]
gi|224954598|gb|EEG35807.1| hypothetical protein EUBHAL_02398 [Eubacterium hallii DSM 3353]
Length = 165
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 49/154 (31%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T + DK++ E+ R+ E RP +++ + EARA+GDLSEN EY AAK+ +N NE R+
Sbjct: 2 KHKLTQQDVDKMKAEIEHRKVEVRPELLEHVKEARAHGDLSENFEYHAAKKEKNRNESRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LE +I E+++ + + D++ TV+L + + + V D VSI
Sbjct: 62 RYLERMIRTCEIVEDHS-NADQVGLNKTVTLYFEEDDETDKFSFVTTVLVDTMQNRVSIE 120
Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
SP+ +AL+G + G+ + + EI ++
Sbjct: 121 SPLGKALLGHKKGERVYIPVNAQYGYYVEIKEIE 154
>gi|302874290|ref|YP_003842923.1| GreA/GreB family elongation factor [Clostridium cellulovorans 743B]
gi|307689446|ref|ZP_07631892.1| transcription elongation factor GreA [Clostridium cellulovorans
743B]
gi|302577147|gb|ADL51159.1| GreA/GreB family elongation factor [Clostridium cellulovorans 743B]
Length = 154
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K +T + K+Q+EL +R +R I K A A+GD SENAEY+ A N+
Sbjct: 1 MNNK--LTLENMKKLQEELEYRMTVKRAEIAKEKLIAAAHGDRSENAEYKEACANYREND 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L +I+ A +ID T+ + + + +V + D ++ +
Sbjct: 59 NRIQYLLTMISTATLIDEHTVDKSTLGINTKAKVRFIEDDYEDVLTLVTTMDLDPENMYI 118
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SI S + +AL GK+ G+I++VNAP T EIL++L
Sbjct: 119 SIESDLGKALSGKKAGEIVTVNAPEDIYTVEILEIL 154
>gi|197294551|ref|YP_001799092.1| transcription elongation factor GreA [Candidatus Phytoplasma
australiense]
gi|171853878|emb|CAM11840.1| Transcription elongation factor [Candidatus Phytoplasma
australiense]
Length = 156
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 4/158 (2%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +KI +T G K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L
Sbjct: 1 MKNKIYELTQPGILKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ E++NI+ V+ +S I G VSL NSG ++ +++V E+D S
Sbjct: 61 EYRITEIQNILKNVRVVKVSK--DKEINIGKKVSLKMLNSGTEEEFELVSTLESDPFSNK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
+SI SP+ + + G E+GD++ + + G K +IL V
Sbjct: 119 ISIESPLGKKIKGHEIGDVVFITSETGTKFKVKILDVK 156
>gi|295094872|emb|CBK83963.1| Transcription elongation factor [Coprococcus sp. ART55/1]
Length = 165
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 54/147 (36%), Positives = 91/147 (61%), Gaps = 1/147 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K +K++QE+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTKKDIEKMEQEIEYRKCVVRKEKLEAVKEARAQGDLSENFEYYAAKKDKNANERRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ A++ID ++ D + TV++ ++ +++ Y++V ADV G VS SPI
Sbjct: 65 DRLVRTADIIDDTSAD-DEVGIDNTVTVYFEDDDEEETYRVVTSVRADVLDGRVSNVSPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153
RA++G ++GD + V GE Y ++
Sbjct: 124 GRAIMGHKVGDRVQVVPEKGEPYYLVI 150
>gi|227364132|ref|ZP_03848230.1| transcription elongation factor GreA [Lactobacillus reuteri MM2-3]
gi|325683336|ref|ZP_08162852.1| transcription elongation factor [Lactobacillus reuteri MM4-1A]
gi|227070857|gb|EEI09182.1| transcription elongation factor GreA [Lactobacillus reuteri MM2-3]
gi|324977686|gb|EGC14637.1| transcription elongation factor [Lactobacillus reuteri MM4-1A]
Length = 192
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T+ G+ +I++++ QQ +RP I+ + ARA GDLSEN EY AK E R+
Sbjct: 44 KMTANGYHEIEEQIAKLQQ-QRPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRY 102
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP
Sbjct: 103 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 160
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +A++ + G ++V AP +I++V
Sbjct: 161 LGQAILHQTAGTTVTVEAPQSSYKVKIVKVE 191
>gi|322435432|ref|YP_004217644.1| transcription elongation factor GreB [Acidobacterium sp. MP5ACTX9]
gi|321163159|gb|ADW68864.1| transcription elongation factor GreB [Acidobacterium sp. MP5ACTX9]
Length = 200
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 5/158 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G ++++ E + ++RP +++ ++ A + GD SENA+YQ +K +GR+
Sbjct: 21 KNYITPGGIERLKAERHFLLTKDRPAVVQVVAWAASNGDRSENADYQYSKRRLRQIDGRV 80
Query: 64 AELENIITRAEVIDISTMSGDR----IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
L I AEVID + FGATV +G + IVG E ++
Sbjct: 81 RFLTKRIEAAEVIDPEAPRTGQRATRAFFGATVRYANA-AGIVRVVSIVGTDEVNLDRNH 139
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S +SP+ RAL+ D + ++APGG +T +L+V +
Sbjct: 140 ISWASPLGRALMKAGEDDEVVLHAPGGTETLTVLEVRY 177
>gi|227494766|ref|ZP_03925082.1| transcription elongation factor GreA [Actinomyces coleocanis DSM
15436]
gi|226831766|gb|EEH64149.1| transcription elongation factor GreA [Actinomyces coleocanis DSM
15436]
Length = 159
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 7/157 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + + +T + +D++++EL R +R I I AR GDL EN Y AA++ Q +NE
Sbjct: 1 MSESLWLTQEAYDRLKEELEHRSTIKRQEIATKIDNARQEGDLKENGGYHAARDEQAMNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL- 119
R+ +L NI+ A V+ + + G V+ S ++ ++G + A + L
Sbjct: 61 TRINQLTNILRDA-VVGATPADDGIVEAGMVVTAEIMGS---QSTFLLGSRMAGSEDDLE 116
Query: 120 -VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
SI +PI +AL G ++G+ +S AP G E +IL
Sbjct: 117 VYSIDAPIGQALNGHKVGETVSYFAPNGREIEVKILD 153
>gi|15806181|ref|NP_294886.1| transcription elongation factor [Deinococcus radiodurans R1]
gi|6458901|gb|AAF10735.1|AE001965_9 transcription elongation factor [Deinococcus radiodurans R1]
Length = 158
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 87/155 (56%), Gaps = 1/155 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ + +T +G ++++++L++ + R +I + + +A GDL E+A Y A+ Q+ NE +
Sbjct: 4 EPVRMTRQGKERLEEQLQYLKTTRREQISEYMGKAIEDGDLRESAAYDEARMQQSENEAK 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+AE+E + RA+++ + + GA +VE ++ +IVG E DV G +S
Sbjct: 64 IAEIEAQLERAQIMKDEEIDTSAVGVGAR-VIVEDAQNKQRTLEIVGSFEVDVLKGKISD 122
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SP+ +AL+GK G+ P G + +++ V +
Sbjct: 123 ASPMGQALLGKRPGESAVWPGPKGNVSLKVISVEY 157
>gi|302558762|ref|ZP_07311104.1| transcription elongation factor GreA [Streptomyces griseoflavus
Tu4000]
gi|302476380|gb|EFL39473.1| transcription elongation factor GreA [Streptomyces griseoflavus
Tu4000]
Length = 165
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + ++K++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNKLKVELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + G +A G V++ + + D + + + A + S S
Sbjct: 70 LTQLLESAKVGEAPAADG-AVAPGMVVTIAFDGDEDDTLTFLLASREYASSEIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
P+ ++G ++G+ P G+K +IL+
Sbjct: 129 PLGSGVMGHKVGEDAEYELPNGKKAMVKILE 159
>gi|296128797|ref|YP_003636047.1| GreA/GreB family elongation factor [Cellulomonas flavigena DSM
20109]
gi|296020612|gb|ADG73848.1| GreA/GreB family elongation factor [Cellulomonas flavigena DSM
20109]
Length = 161
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 6/149 (4%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D++ +EL + Q R I I+ AR GDL EN Y AA+E Q E R+ E
Sbjct: 9 WLTQEAYDRLTEELEYLQTVGRKEITDRIAAARDEGDLKENGGYHAAREEQAKQEARIRE 68
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGLVSISS 124
L+ + ++ + G V+ V +GD+ + + + A + S +S
Sbjct: 69 LQAKLRNVQIGTPP--DDGVVEPGMVVTAV--VAGDEMTFLLGSREIAGTADIDVFSPTS 124
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEI 152
P+ A+ G ++GD + AP G + EI
Sbjct: 125 PLGAAIHGHKVGDSTTYEAPNGRQIPVEI 153
>gi|29829843|ref|NP_824477.1| transcription elongation factor GreA [Streptomyces avermitilis
MA-4680]
gi|81719423|sp|Q82I57|GREA_STRAW RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|29606952|dbj|BAC71012.1| putative transcription elongation factor [Streptomyces avermitilis
MA-4680]
Length = 165
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNQLKAELEYLSGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + G +A G V++ + + D ++ + + A S S
Sbjct: 70 LTQLLENAKVGEAPAADG-AVAPGMVVTIAFDGDEDDTLDFLLASREYASADIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
P+ + GK++G+ P G+ + +IL+
Sbjct: 129 PLGSGVNGKKVGEDAQYELPNGKLASVKILK 159
>gi|213965457|ref|ZP_03393652.1| transcription elongation factor GreA [Corynebacterium amycolatum
SK46]
gi|213951841|gb|EEB63228.1| transcription elongation factor GreA [Corynebacterium amycolatum
SK46]
Length = 170
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 76/152 (50%), Gaps = 4/152 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +DK++ EL E RP I I+E R GDL ENA Y AA+E Q E R+
Sbjct: 10 WLTQESYDKLKSELEAL-YENRPVIAAEINERREEGDLKENAGYDAAREQQGQEEARIRY 68
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQSGLVSIS 123
LE+++ RA V +I SG + + + D + + I G ++ S
Sbjct: 69 LEDLLQRATVGEIPQESGVALVGTVVHVYYDGDEDDTETFLIGTRGADSSNPNLETYSTD 128
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
SP+ +AL+G + G+ + +P G E + +++
Sbjct: 129 SPLGKALVGAKEGETRTYTSPSGDEVSVTVIK 160
>gi|182415840|ref|YP_001820906.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
gi|177843054|gb|ACB77306.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
Length = 616
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 80/153 (52%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+++ V+ +++ ++E ++ P KAI+ AR +GDL EN+EY+ AK+ Q +
Sbjct: 456 EQLIVSKASYERKREEYETIVSKKIPENSKAIAAAREHGDLRENSEYKMAKQEQQVLMAH 515
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
LE + RA + D S D+++ G V + G Y ++G + D + +S
Sbjct: 516 KTNLERDLGRARISDFKDASIDQVSVGTVVEVASVKDGHHTTYTVLGAWDGDPEKHFISY 575
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+P AL+GK+ GD+I+V ++ Y I+ +
Sbjct: 576 KTPFGAALLGKKTGDVINVKTDASDEDYAIVSI 608
>gi|213163601|ref|ZP_03349311.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 109
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 47/109 (43%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVG 109
R+ ++E ++ A+VID++ M + R+ FGATV+++ ++ +++ Y+IVG
Sbjct: 61 RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVG 109
>gi|319936519|ref|ZP_08010934.1| transcription elongation factor [Coprobacillus sp. 29_1]
gi|319808411|gb|EFW04966.1| transcription elongation factor [Coprobacillus sp. 29_1]
Length = 194
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/148 (35%), Positives = 82/148 (55%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K D ++ E+ R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L
Sbjct: 32 LTQKDIDAMKAEIEHRKVVVRKELLEDVKEARAHGDLSENFEYHAAKKEKNRNESRIRYL 91
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I AEVI + D I V L ++ D + Y+IV + GLVS SPI
Sbjct: 92 ERMIKTAEVISDESKD-DEIGLNKIVELYFEDEDDVETYKIVTTVRGNSLQGLVSTESPI 150
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+AL+G ++GD + + Y +++
Sbjct: 151 GKALLGHKVGDKVWIPINANAGYYVVVK 178
>gi|256420286|ref|YP_003120939.1| transcription elongation factor GreA [Chitinophaga pinensis DSM
2588]
gi|256035194|gb|ACU58738.1| transcription elongation factor GreA [Chitinophaga pinensis DSM
2588]
Length = 157
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 95/156 (60%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M VT + D++++EL + + + R I +AI+EAR GDL ENAEY AAKE Q ++E
Sbjct: 1 MSGINYVTKETLDQMREELSFLKTKGRAEIARAIAEAREKGDLKENAEYDAAKEAQGMHE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++A LE+ I A +++ ++ +++ V++ + YQ+V ++EAD++ +
Sbjct: 61 AKVAILESAIATARIVEADSIDTSKVSILCKVTITNMANKKTVTYQLVSEKEADLKLNKI 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S++SPI + L+GK +G+I V+AP G ++I +
Sbjct: 121 SVTSPIGKGLLGKAVGEIADVHAPNGSLKFKIENIT 156
>gi|313674502|ref|YP_004052498.1| transcription elongation factor greb [Marivirga tractuosa DSM 4126]
gi|312941200|gb|ADR20390.1| transcription elongation factor GreB [Marivirga tractuosa DSM 4126]
Length = 145
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 12/145 (8%)
Query: 1 MVDKIP------------VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
M KIP +T++GF K+++E + RP + +S A + GD SENA+
Sbjct: 1 MRRKIPESTLSKLNRSQMITAEGFQKLREEHDHLWKVVRPDVTAKVSWAASLGDRSENAD 60
Query: 49 YQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV 108
Y K+ +GR+ L I +VI ++ FGA V + + G KK +IV
Sbjct: 61 YHYNKKRLREIDGRIRYLRKCIDNFKVIHYHPHQEGKVMFGAWVEVENIDRGLKKRLRIV 120
Query: 109 GDQEADVQSGLVSISSPIARALIGK 133
G +E +S+ SP+A+AL+ K
Sbjct: 121 GYEELIGNKDYISMDSPLAQALLNK 145
>gi|119715224|ref|YP_922189.1| transcription elongation factor GreA [Nocardioides sp. JS614]
gi|119535885|gb|ABL80502.1| transcription elongation factor GreA [Nocardioides sp. JS614]
Length = 167
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 3/146 (2%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T +DK++ EL + R II IS AR GDL EN Y AA+E Q EGR+
Sbjct: 10 VWLTQDAYDKLRAELESLKGPVRQEIIARISSARDEGDLKENGAYHAAREEQGKVEGRIR 69
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEK-NSGDKKNYQIVGDQEADVQ-SGLVSI 122
+LE+++ RAEV + G + G V+ ++ D+ ++G +E + + + S
Sbjct: 70 QLEDVLRRAEVGETPPNDG-VVEPGMVVTYRFVGDAEDEVETFLLGAREIEPEGLTVYSP 128
Query: 123 SSPIARALIGKELGDIISVNAPGGEK 148
SP+ A+ GK GD +S AP G++
Sbjct: 129 QSPLGSAINGKAKGDTVSYLAPNGKE 154
>gi|260438639|ref|ZP_05792455.1| transcription elongation factor GreA [Butyrivibrio crossotus DSM
2876]
gi|292809233|gb|EFF68438.1| transcription elongation factor GreA [Butyrivibrio crossotus DSM
2876]
Length = 166
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 48/148 (32%), Positives = 82/148 (55%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K+Q+E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTENDIKKMQEEIEYRKVVLRKELLEHVKEARAHGDLSENFEYHAAKKEKNRNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A VI + D + V L ++ + + ++IV + +GL+S SPI
Sbjct: 65 EKMIKTANVISDESAD-DEVGLNNKVELYFEDDDETETFKIVTTVRGNSLNGLISNESPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+A++ + GD + V G Y +++
Sbjct: 124 GKAVLSHKAGDRVFVEVSPGNGYYVVIK 151
>gi|184154324|ref|YP_001842665.1| transcription elongation factor GreA [Lactobacillus reuteri JCM
1112]
gi|183225668|dbj|BAG26185.1| transcription elongation factor GreA [Lactobacillus reuteri JCM
1112]
Length = 156
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T+ G+ +I++++ QQ +RP I+ + ARA GDLSEN EY AK E R+
Sbjct: 8 KMTANGYHEIEEQIAKLQQ-QRPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRY 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP
Sbjct: 67 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +A++ + G ++V AP +I++V
Sbjct: 125 LGQAILHQTAGTTVTVEAPQSSYKVKIVKVE 155
>gi|85057700|ref|YP_456616.1| transcription elongation factor GreA [Aster yellows witches'-broom
phytoplasma AYWB]
gi|84789805|gb|ABC65537.1| transcription elongation factor GreA [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 156
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 52/158 (32%), Positives = 93/158 (58%), Gaps = 4/158 (2%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +KI +T G +K+++EL + ++ +R ++A+ EAR GDLSENA+Y AA+ Q L
Sbjct: 1 MNNKIYELTQTGIEKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD +
Sbjct: 61 EHRISEIQNILKNVRVVKVSKE--REVSIGKKVSLELLHTKQQQEIELVSTLEADPFTNK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+SI SP+ + + G ++GDI+ V + G +I+ V
Sbjct: 119 ISIESPLGQNIKGHQIGDIVFVTSETGNTFRVKIVDVQ 156
>gi|315650384|ref|ZP_07903455.1| transcription elongation factor GreA [Eubacterium saburreum DSM
3986]
gi|315487311|gb|EFU77622.1| transcription elongation factor GreA [Eubacterium saburreum DSM
3986]
Length = 168
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T + KI+ E+ R+ RP++I+A+ EARA GDLSEN EY AAK +N NE
Sbjct: 5 MAET--LTKEDIKKIEAEIEERKLVLRPQLIEAVKEARAQGDLSENFEYYAAKREKNKNE 62
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE ++ V + T D + G V L ++ + + ++IV D G +
Sbjct: 63 SRINYLERMLKFCHVYEDKTND-DEVGIGKEVELYFEDDDESEKFKIVTSIRGDSLKGRL 121
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SI SPI +A+IG++ GD + V +I+ +
Sbjct: 122 SIESPIGKAIIGRKKGDRVKVAVGNRGYFVKIMSIE 157
>gi|210611522|ref|ZP_03288942.1| hypothetical protein CLONEX_01132 [Clostridium nexile DSM 1787]
gi|210151969|gb|EEA82976.1| hypothetical protein CLONEX_01132 [Clostridium nexile DSM 1787]
Length = 194
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/148 (35%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K D ++ E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L
Sbjct: 32 LTQKDIDAMKAEIEYRKVVVRKELLEDVKEARAHGDLSENFEYHAAKKEKNRNESRIRYL 91
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I AEVI + D I V L ++ D + Y+IV + GLVS SPI
Sbjct: 92 ERMIKTAEVISDESKD-DEIGLNKIVELYFEDEDDVETYKIVTTVRGNSLQGLVSTESPI 150
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+AL+G ++GD + + Y +++
Sbjct: 151 GKALLGHKVGDKVWIPINANAGYYVVVK 178
>gi|218960396|ref|YP_001740171.1| putative transcription elongation factor [Candidatus Cloacamonas
acidaminovorans]
gi|167729053|emb|CAO79964.1| putative transcription elongation factor [Candidatus Cloacamonas
acidaminovorans]
Length = 159
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 5/154 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G ++Q+ + ERP +IKA++ AR +GDLSENAEY+AA+E Q + + L
Sbjct: 7 ITKTGMQRLQKRINELLA-ERPEVIKAVAIAREFGDLSENAEYKAARERQRAIDNEIDYL 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----LVSI 122
+VID S D + FG + N+ + Y +VG +E + + VSI
Sbjct: 66 RRRSANLKVIDTSEFPKDMVRFGTYCVAEDINTKECICYHLVGPEELNYYNEEGIQEVSI 125
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPI +AL+ K++G+I V AP GE+ +I ++
Sbjct: 126 VSPIGKALLSKKIGEIAIVKAPIGERKLKIREIK 159
>gi|256848431|ref|ZP_05553873.1| transcription elongation factor GreB [Lactobacillus coleohominis
101-4-CHN]
gi|256714698|gb|EEU29677.1| transcription elongation factor GreB [Lactobacillus coleohominis
101-4-CHN]
Length = 155
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 81/151 (53%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +G+ +I+ ++ ++ ERP I + ARA GDLSEN EY AK E R+
Sbjct: 8 KMTPEGYHEIELQIEELKK-ERPTKIARLKAARALGDLSENTEYSTAKRDLRHLESRLRY 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L +T A+VI G I G+TV++ + + YQIVG EAD+ + ++ SP
Sbjct: 67 LNKQLTYAKVI--QHRDGGPIDLGSTVTIEFLDDHSQITYQIVGTHEADLANHKLAFDSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +A++GK +++V AP +I+ V
Sbjct: 125 LGQAMMGKMANLVVNVVAPDSTYQVKIINVK 155
>gi|332654125|ref|ZP_08419869.1| transcription elongation factor GreA [Ruminococcaceae bacterium
D16]
gi|332517211|gb|EGJ46816.1| transcription elongation factor GreA [Ruminococcaceae bacterium
D16]
Length = 167
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 86/137 (62%), Gaps = 1/137 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K + +++EL R+ RP++++A+ EARA+GDLSEN EY+AAK+ +N NE R+ L
Sbjct: 5 LTQKDLELMRKELDHRRIVLRPQLLEAVKEARAFGDLSENFEYKAAKQEKNRNESRIRFL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN+I A VI + S D++ V++ ++ +++ YQIV D GL+S SP+
Sbjct: 65 ENMIKTAVVISDQSGS-DQVGLYDKVTVYMEDDDEEEVYQIVTTMRQDALKGLISKESPV 123
Query: 127 ARALIGKELGDIISVNA 143
R L+G+ +GD + +
Sbjct: 124 GRCLLGRRVGDRVHIQV 140
>gi|227545317|ref|ZP_03975366.1| transcription elongation factor [Lactobacillus reuteri CF48-3A]
gi|300908606|ref|ZP_07126069.1| transcription elongation factor [Lactobacillus reuteri SD2112]
gi|227184713|gb|EEI64784.1| transcription elongation factor [Lactobacillus reuteri CF48-3A]
gi|300894013|gb|EFK87371.1| transcription elongation factor [Lactobacillus reuteri SD2112]
Length = 192
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 82/151 (54%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T+ G+ +I++++ +Q +RP I + ARA GDLSEN EY AK E R+
Sbjct: 44 KMTANGYHEIEEQIAKLKQ-QRPAKIGQLKAARALGDLSENTEYSTAKRELRHLESRLRY 102
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + AE++ + + I G TV + ++ +++ Y IVG QEAD+ +S SP
Sbjct: 103 LNKQLQYAEIV--TPKNDHTIDLGTTVIIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 160
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +AL+ K G ++V AP +I+++
Sbjct: 161 LGQALLHKTAGITVTVEAPQSSYKVKIVKIE 191
>gi|225570871|ref|ZP_03779894.1| hypothetical protein CLOHYLEM_06975 [Clostridium hylemonae DSM
15053]
gi|225160333|gb|EEG72952.1| hypothetical protein CLOHYLEM_06975 [Clostridium hylemonae DSM
15053]
Length = 185
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 86/150 (57%), Gaps = 1/150 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ +T KI++E+ +R+ R + ++A+ EARA GDLSEN EY+AAK+ +N NE R+
Sbjct: 20 REQLTKSDVQKIKEEIEYRKLVVRKKELEAVKEARAQGDLSENFEYKAAKQDKNRNESRI 79
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LE ++ A ++ ++ D + TV L + + + Y++V + G +SI
Sbjct: 80 RYLEKMLKTARIVSDTSRE-DEVGINNTVELYFEEDDETEKYRLVTSVRGNSLEGRISIE 138
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153
SP+ +A++G + G+ + V A GG Y ++
Sbjct: 139 SPLGKAILGHKEGERVKVTANGGSGYYVVI 168
>gi|240147556|ref|ZP_04746157.1| transcription elongation factor GreA [Roseburia intestinalis L1-82]
gi|257200241|gb|EEU98525.1| transcription elongation factor GreA [Roseburia intestinalis L1-82]
gi|291538590|emb|CBL11701.1| transcription elongation factor GreA [Roseburia intestinalis XB6B4]
Length = 167
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+++E+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTEQDIKKMEEEIEYRKLVVRKEALEAVKEARAQGDLSENFEYHAAKKDKNQNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A+VI + + D + TV++ + +++ Y++V + L+S SP+
Sbjct: 65 ERMIKTAKVISTDS-AEDEVGMNNTVTVYFEEDDEEEVYKLVTTVRGNSLKNLISNESPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153
+AL+G ++GD + V +Y ++
Sbjct: 124 GKALLGHKVGDRVEVAV-NENYSYYVV 149
>gi|47459270|ref|YP_016132.1| transcription elongation factor [Mycoplasma mobile 163K]
gi|47458599|gb|AAT27921.1| transcription elongation factor [Mycoplasma mobile 163K]
Length = 174
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 2/151 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K+ +T + + + EL ERP+II+ I +ARA GDLSEN+EY +A+E Q E R+
Sbjct: 22 KLYLTLESVETYKTELNNLINVERPKIIEEIKDARAQGDLSENSEYDSAREKQGQIEDRI 81
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
E+E I+ I ++ S ++ G+ V L ++ + +IVG E D +S S
Sbjct: 82 KEIEYILENYTEIQNASKSK-KVTIGSKVLLKRIDNKKQFEVKIVGTLETDPFLNKISYS 140
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
SPI++ ++G ++GD+ +NAP + EIL+
Sbjct: 141 SPISQGIMGSKIGDVREINAPT-KYEVEILK 170
>gi|254389866|ref|ZP_05005089.1| transcription elongation factor greA [Streptomyces clavuligerus
ATCC 27064]
gi|294814692|ref|ZP_06773335.1| Transcription elongation factor [Streptomyces clavuligerus ATCC
27064]
gi|326443074|ref|ZP_08217808.1| transcription elongation factor GreA [Streptomyces clavuligerus
ATCC 27064]
gi|197703576|gb|EDY49388.1| transcription elongation factor greA [Streptomyces clavuligerus
ATCC 27064]
gi|294327291|gb|EFG08934.1| Transcription elongation factor [Streptomyces clavuligerus ATCC
27064]
Length = 165
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +++++ EL R I K I AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNQLKAELEHLSGPARVEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + G + G V++ + + D + + + A S S
Sbjct: 70 LTQLLDSAKVGEAPADDG-VVEPGMVVTIAFDGDEDDTLTFLMASREYASSNIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
P+ + GK++GD P G + +IL
Sbjct: 129 PLGTGVNGKKVGDTAEYELPNGSQAMVKILA 159
>gi|220912010|ref|YP_002487319.1| transcription elongation factor GreA [Arthrobacter chlorophenolicus
A6]
gi|219858888|gb|ACL39230.1| transcription elongation factor GreA [Arthrobacter chlorophenolicus
A6]
Length = 164
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 75/151 (49%), Gaps = 5/151 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + FD+++ EL R I++ I AR GDL EN Y AAKE Q E R+ +
Sbjct: 11 WLTQEAFDRLKAELDQLSGPGRAEIVQKIDAARQEGDLKENGGYHAAKEEQGKIEARIRQ 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124
L ++ A V + S + G +V + +GD++ + + + A D + S S
Sbjct: 71 LTVLLRDAHVGE-SPADDGIVEPGMI--VVARIAGDEETFLLGSREIAGDSDLDVFSEKS 127
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154
P+ A++G + G+ +S AP G + EIL
Sbjct: 128 PLGSAILGHKEGETLSYVAPNGKDIKVEILS 158
>gi|317124131|ref|YP_004098243.1| transcription elongation factor GreA [Intrasporangium calvum DSM
43043]
gi|315588219|gb|ADU47516.1| transcription elongation factor GreA [Intrasporangium calvum DSM
43043]
Length = 160
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 45/149 (30%), Positives = 76/149 (51%), Gaps = 4/149 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + +D+++ EL R I + I EAR GDL EN Y AA+E Q E R+ +L
Sbjct: 9 LTKEAYDRLKAELDQLTGVGRIEIARKIEEAREEGDLKENGGYHAAREEQGKMEARIRQL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++++ A V + G + G V++ + G+++ + + + AD + S SP+
Sbjct: 69 QDLLHNAVVGETPPDDG-VVEPGMVVTV--ELFGEQEKFLLGSREIADDDLQVFSEKSPM 125
Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQ 154
A+ GK +GD S AP G+ +IL
Sbjct: 126 GAAVNGKSVGDTTSYEAPTGKTIEVKILD 154
>gi|306824895|ref|ZP_07458239.1| transcription elongation factor GreA [Streptococcus sp. oral taxon
071 str. 73H25AP]
gi|304433106|gb|EFM36078.1| transcription elongation factor GreA [Streptococcus sp. oral taxon
071 str. 73H25AP]
Length = 160
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 63/157 (40%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKKKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEEEEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GDI+++ P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKTGDIVTIETPVGSYDVKILKVE 157
>gi|163814034|ref|ZP_02205426.1| hypothetical protein COPEUT_00187 [Coprococcus eutactus ATCC 27759]
gi|158450483|gb|EDP27478.1| hypothetical protein COPEUT_00187 [Coprococcus eutactus ATCC 27759]
Length = 165
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 53/151 (35%), Positives = 91/151 (60%), Gaps = 2/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K +KI+QE+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTQKDIEKIEQEIEYRKCVVRKEKLEAVKEARAQGDLSENFEYYAAKKDKNANERRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ A++I+ S D + TV++ ++ +++ Y++V AD+ GLVS SPI
Sbjct: 65 DRLVRTADIIE-DNSSDDEVGIDNTVTVYFEDDDEEETYRVVTSVRADILEGLVSNVSPI 123
Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+A++G ++GD + V G+ I ++
Sbjct: 124 GKAILGHKVGDRVQVVPERGDPYFITIRKIE 154
>gi|229826123|ref|ZP_04452192.1| hypothetical protein GCWU000182_01488 [Abiotrophia defectiva ATCC
49176]
gi|229789696|gb|EEP25810.1| hypothetical protein GCWU000182_01488 [Abiotrophia defectiva ATCC
49176]
Length = 167
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 81/137 (59%), Gaps = 1/137 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T ++++E+ R+ R I+A+ EARA GDLSEN EY AAK +N NE R+ L
Sbjct: 5 LTKNDIRRLEEEIEHRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKRHKNQNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A++I+ + S D + TV++ + +++ +++V D + L++I SP+
Sbjct: 65 EKMIKTAKIIEDDS-SEDEVGPDNTVTVYFIDDDEEETFKLVTAVRGDSLNNLITIDSPL 123
Query: 127 ARALIGKELGDIISVNA 143
+AL+ K++GD + V
Sbjct: 124 GKALLKKKVGDKVYVKV 140
>gi|331003037|ref|ZP_08326549.1| hypothetical protein HMPREF0491_01411 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413081|gb|EGG92456.1| hypothetical protein HMPREF0491_01411 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 164
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + KI+ E+ R+ RP++I+A+ EARA+GDLSEN EY AAK +N NE R+ L
Sbjct: 5 LTKEDIKKIEAEIEERKLVLRPQLIEAVKEARAHGDLSENFEYYAAKREKNKNESRINYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ V + T D++ V L + + + ++IV D G +SI SPI
Sbjct: 65 ERMLRFCNVYEDKTED-DQVGIDKVVELYFEEDDESEKFKIVTSIRGDSLEGRLSIESPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+A++GK+ GD + V G +I+ +
Sbjct: 124 GKAIVGKKKGDRVRVPVGDGGYFVKIMSIE 153
>gi|297157679|gb|ADI07391.1| transcription elongation factor GreA [Streptomyces bingchenggensis
BCW-1]
Length = 165
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D+++ EL + R I K I AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYDQLKAELEYLSGPARVEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + + +A G V++ + + D + + + A S S
Sbjct: 70 LTQLLQHAKVGE-APADTGVVAPGMVVTIAFDGDPDDSLTFLLASREYASSDIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154
P+ + GK++G+ S P G + +IL+
Sbjct: 129 PLGSGVNGKKVGEDASYELPNGRTASVKILE 159
>gi|184156278|ref|YP_001844618.1| transcription elongation factor GreA [Lactobacillus fermentum IFO
3956]
gi|183227622|dbj|BAG28138.1| elongation factor GreA [Lactobacillus fermentum IFO 3956]
Length = 160
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 9/161 (5%)
Query: 2 VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
+ KI +T G+ I++++ +Q +RP +I + ARA GDLSEN EY AK
Sbjct: 1 MAKIYYQEMTPAGYRAIEEQIEALKQ-KRPTLITRLKAARALGDLSENTEYSTAKRELRH 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD---QEADV 115
E R+ L+ +T A+VID+S ++A G V++ + ++ YQIVG ++A +
Sbjct: 60 LESRLRYLDKQLTYAKVIDVS--DDGKVALGKVVTIRFLDDQEEATYQIVGRHQAEQASL 117
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+++ SP+ AL G G ++V+AP I+ V
Sbjct: 118 TEEVLAFDSPLGLALKGHTAGTTVTVHAPAASYQVTIITVK 158
>gi|227514075|ref|ZP_03944124.1| transcription elongation factor [Lactobacillus fermentum ATCC
14931]
gi|260662496|ref|ZP_05863391.1| elongation factor GreA [Lactobacillus fermentum 28-3-CHN]
gi|227087556|gb|EEI22868.1| transcription elongation factor [Lactobacillus fermentum ATCC
14931]
gi|260553187|gb|EEX26130.1| elongation factor GreA [Lactobacillus fermentum 28-3-CHN]
Length = 160
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 9/161 (5%)
Query: 2 VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
+ KI +T G+ I++++ +Q +RP +I + ARA GDLSEN EY AK
Sbjct: 1 MAKIYYQEMTPAGYRAIEEQIEALKQ-KRPTLITRLKAARALGDLSENTEYSTAKRELRH 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD---QEADV 115
E R+ L+ +T A+VID+S ++A G V++ + ++ YQIVG ++A +
Sbjct: 60 LESRLRYLDKQLTYAKVIDVS--DDGKVALGKVVTIRFLDDQEEATYQIVGRHQAEQASL 117
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+++ SP+ AL G G ++V+AP I+ V
Sbjct: 118 TEEVLAFDSPLGLALKGHTAGTTVTVHAPAASYQVTIITVK 158
>gi|319938683|ref|ZP_08013047.1| transcription elongation factor greA [Streptococcus anginosus
1_2_62CV]
gi|319811733|gb|EFW07999.1| transcription elongation factor greA [Streptococcus anginosus
1_2_62CV]
Length = 160
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE++D ++ D +A G TV++ E D++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVDSDAVAQDEVAIGKTVTIQEVGETDEEVYMIVGAAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD +V P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKILKVE 157
>gi|187250809|ref|YP_001875291.1| transcription elongation factor [Elusimicrobium minutum Pei191]
gi|186970969|gb|ACC97954.1| Transcription elongation factor [Elusimicrobium minutum Pei191]
Length = 156
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 44/156 (28%), Positives = 90/156 (57%), Gaps = 1/156 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K ++ K ++K++++L ++ + ++ I EA GDL ENAEY AAK Q
Sbjct: 1 MEKYYLSRKNYEKLREDLTALKEIK-AKLSLEIGEAAQQGDLRENAEYAAAKSRQEETLV 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++ +LE + A++ D + GATV++ + ++ Y +VG E++ + GL+S
Sbjct: 60 KIQDLEQKLRNAQITDDIQVDKSEARIGATVTVHDISADIDFTYTLVGSMESNPEKGLLS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+A +++GK+ G+ P G+K Y+++++ +
Sbjct: 120 VQSPLAVSILGKKEGEEFEAVLPKGKKMYKLVKLEY 155
>gi|291536540|emb|CBL09652.1| transcription elongation factor GreA [Roseburia intestinalis M50/1]
Length = 167
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 48/147 (32%), Positives = 85/147 (57%), Gaps = 2/147 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+++E+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTEQDIKKMEEEIEYRKLVVRKEALEAVKEARAQGDLSENFEYHAAKKDKNQNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A+VI + + D + TV++ + +++ Y+IV + L+S SP+
Sbjct: 65 ERMIKTAKVISTDS-AEDEVGMNNTVTVYFEEDDEEEVYKIVTTVRGNSLKNLISNESPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153
+AL+G ++GD + V +Y ++
Sbjct: 124 GKALLGHKVGDRVEVAV-NENYSYYVV 149
>gi|154495827|ref|ZP_02034523.1| hypothetical protein BACCAP_00107 [Bacteroides capillosus ATCC
29799]
gi|150275025|gb|EDN02073.1| hypothetical protein BACCAP_00107 [Bacteroides capillosus ATCC
29799]
Length = 197
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K +++EL +R+ RP++++A+ EAR +GDLSEN EY+AAK+ +N NE R+ L
Sbjct: 35 LTRKDLQMMREELDYRRITLRPQLLEAVKEARGFGDLSENFEYKAAKQEKNRNESRIRFL 94
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
EN+I A VI + D + V++ + + + YQ+V D G +S SP+
Sbjct: 95 ENMIRTAVVI-SDQAAPDTVGLYDKVTVYLEEDDETETYQVVTTMRQDALHGRISKESPV 153
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
AL+GK +GD I + Y +++
Sbjct: 154 GSALLGKRVGDRIYIQVNDNYGYYVVIK 181
>gi|269925131|ref|YP_003321754.1| transcription elongation factor GreA [Thermobaculum terrenum ATCC
BAA-798]
gi|269788791|gb|ACZ40932.1| transcription elongation factor GreA [Thermobaculum terrenum ATCC
BAA-798]
Length = 159
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 5/157 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+++ +T +G ++++EL + ER +I I EA+ GD+SE+ EY+ AK Q EGR
Sbjct: 5 ERVRLTEQGLKELREELERLRTVERAKISARIREAKEGGDISESGEYEDAKHSQAFLEGR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG---L 119
+ ELE ++ AEVID S + G+ V++ + +G Y IV EA
Sbjct: 65 IKELEKLLANAEVIDRSAQPAGTVGLGSKVTV--EENGRTYTYTIVDGAEAGRGRDGEVR 122
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S S + AL+G+ +GD + V P G+ T++IL V
Sbjct: 123 ISSKSAVGSALLGRRVGDSVEVEVPAGKLTFKILSVE 159
>gi|148544990|ref|YP_001272360.1| transcription elongation factor GreA [Lactobacillus reuteri DSM
20016]
gi|148532024|gb|ABQ84023.1| transcription elongation factor GreA [Lactobacillus reuteri DSM
20016]
Length = 165
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 84/151 (55%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T+ G+ +I++++ QQ +RP I+ + ARA GDLSEN EY AK E R+
Sbjct: 17 KMTANGYHEIEEQIAKLQQ-QRPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRY 75
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + AE++ + + I G TV++ ++ +++ Y IVG QEAD+ +S SP
Sbjct: 76 LNKQLQYAEIV--TPKNDHTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +A++ + G ++V AP +I++V
Sbjct: 134 LGQAILHQTAGTTVTVEAPQSSYKVKIVKVE 164
>gi|254498603|ref|ZP_05111322.1| transcription elongation factor GreA [Legionella drancourtii
LLAP12]
gi|254352143|gb|EET10959.1| transcription elongation factor GreA [Legionella drancourtii
LLAP12]
Length = 139
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 50/116 (43%), Positives = 85/116 (73%), Gaps = 1/116 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P+T +G + +++EL+ + +RPRI+++I+ ARA+GDL ENAEY AA+E Q+ NEG
Sbjct: 22 MNKHPMTIQGAEALKEELQRLKFVDRPRIVESIATARAHGDLKENAEYHAAREQQSFNEG 81
Query: 62 RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
R+ ELE ++ A++IDIS + + ++ FG+TV++ + + YQIVG+ EAD++
Sbjct: 82 RIQELEAKLSNAQIIDISKLPNNGKVVFGSTVTVCHVATDAQLTYQIVGEDEADIK 137
>gi|160901647|ref|YP_001567228.1| transcription elongation factor GreA [Petrotoga mobilis SJ95]
gi|189042243|sp|A9BFC0|GREA_PETMO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|160359291|gb|ABX30905.1| transcription elongation factor GreA [Petrotoga mobilis SJ95]
Length = 159
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 92/159 (57%), Gaps = 3/159 (1%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +++ +T +G++K+++E ++ + + I EAR GDLSEN+EY+ AK Q +
Sbjct: 1 MAEQVYQLTREGYEKLKREREELKKRLMGEVAERIKEARELGDLSENSEYEEAKNEQGMI 60
Query: 60 EGRMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
+ R+ E++ I+ AE+I+ ++ G V + + ++ + +V QEA+++
Sbjct: 61 DSRIKEIDYILDNAEIIENGGNHDNSTVSLGKKVKIKDYRLNREQEFVLVTPQEANIEEN 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+SI SPI R+L+G++ G++I++ G K EI ++
Sbjct: 121 KISIESPIGRSLLGRKKGEVINIKTARGSSKKIEIKEIS 159
>gi|282865260|ref|ZP_06274312.1| transcription elongation factor GreA [Streptomyces sp. ACTE]
gi|282559733|gb|EFB65283.1| transcription elongation factor GreA [Streptomyces sp. ACTE]
Length = 165
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 3/150 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNQLKAELEYLSGPARTEISVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + G + G V++ + + D + + + A S S
Sbjct: 70 LTQLLEHAKVGEPPADDG-VVEPGMVVTIAFDGDPDDTLTFLLASREYATGDIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEIL 153
P+ + GK +G+ P G+K T +IL
Sbjct: 129 PLGTGVNGKRMGEEAEYELPNGKKATVKIL 158
>gi|108801108|ref|YP_641305.1| transcription elongation factor GreA [Mycobacterium sp. MCS]
gi|119870249|ref|YP_940201.1| transcription elongation factor GreA [Mycobacterium sp. KMS]
gi|126436946|ref|YP_001072637.1| transcription elongation factor GreA [Mycobacterium sp. JLS]
gi|108771527|gb|ABG10249.1| transcription elongation factor GreA [Mycobacterium sp. MCS]
gi|119696338|gb|ABL93411.1| transcription elongation factor GreA [Mycobacterium sp. KMS]
gi|126236746|gb|ABO00147.1| transcription elongation factor GreA [Mycobacterium sp. JLS]
Length = 164
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 4/149 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQESYDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREQQGQEEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L+ ++ A+V + SG + + + D + + I ++A D + + S +
Sbjct: 67 LQELLNNAKVGEAPKQSGVALPGSVVKVYYDGDEKDTETFLIGTREQAVNDGKLEVYSPA 126
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ ALI ++G+ + P G T E+
Sbjct: 127 SPLGAALIDAKVGETRTYTVPSGS-TVEV 154
>gi|326381820|ref|ZP_08203513.1| transcription elongation factor GreA [Gordonia neofelifaecis NRRL
B-59395]
gi|326199246|gb|EGD56427.1| transcription elongation factor GreA [Gordonia neofelifaecis NRRL
B-59395]
Length = 162
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTPESYDRLKGELDSLIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L++++ +A+V + SG + + + DK+ + I +E + S SSP
Sbjct: 67 LQDLLNKAKVGEAPKQSGVALPGSVVTVYYDGDESDKETFLIATREEGSGDIEIYSPSSP 126
Query: 126 IARALIGKELGDIISVNAPGG 146
+ ALI ++G+ + P G
Sbjct: 127 LGAALIDAKVGESRTYTVPSG 147
>gi|291561619|emb|CBL40418.1| Transcription elongation factor [butyrate-producing bacterium
SS3/4]
Length = 167
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 79/137 (57%), Gaps = 1/137 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K+++E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTKNDIKKMEEEIEYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNKNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A+V+ + D + TV + ++ + + Y+IV + GL+S SP+
Sbjct: 65 ERMIRTAKVVSDESKD-DEVGLYNTVDVYFEDDDETETYKIVTTIRGNSLKGLISSESPL 123
Query: 127 ARALIGKELGDIISVNA 143
RAL+G ++GD + V
Sbjct: 124 GRALLGHKVGDRVHVQV 140
>gi|118469204|ref|YP_889509.1| transcription elongation factor GreA [Mycobacterium smegmatis str.
MC2 155]
gi|166200678|sp|A0R2X1|GREA_MYCS2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|118170491|gb|ABK71387.1| transcription elongation factor GreA [Mycobacterium smegmatis str.
MC2 155]
Length = 164
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + FD+++ EL RP I I++ R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQEAFDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSIS 123
L+ ++ A+V + SG + + + D + + I QE +D + + S +
Sbjct: 67 LQELLNNAKVGEAPKQSGVALPGSVVKVYYDDDENDTETFLIATRQEGISDGKLEVYSPN 126
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ AL+ ++G+ + P G
Sbjct: 127 SPLGGALLDAKVGESRTYTVPSG 149
>gi|309810926|ref|ZP_07704726.1| transcription elongation factor GreA [Dermacoccus sp. Ellin185]
gi|308435080|gb|EFP58912.1| transcription elongation factor GreA [Dermacoccus sp. Ellin185]
Length = 163
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D++ EL + E R I K I AR GDL EN Y AAKE Q E R+ +L
Sbjct: 11 LTQDAYDRLSAELEHLKGEGRSDIAKRIEAAREEGDLKENGGYHAAKEEQGKMEARIRQL 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISSP 125
E+++ A V + + G V++ + GD + + + + A D + S SP
Sbjct: 71 ESLLRDAVVGEAPK-DNGIVDSGMVVTV--EMFGDTETFLLGSREIAGDADIDVYSEQSP 127
Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQ 154
+ A++GK++G+ S +AP G+ +I+
Sbjct: 128 LGEAIMGKKVGEETSYDAPNGKTIEVKIVD 157
>gi|188584758|ref|YP_001916303.1| transcription elongation factor GreA [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179349445|gb|ACB83715.1| transcription elongation factor GreA [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 164
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 47/153 (30%), Positives = 86/153 (56%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++ +T G++++++EL + R + + I A ++GD+SEN+EY AK Q EGR
Sbjct: 11 KEVVLTRGGYEELEEELEHLKTVRRKEVAERIKTAISFGDISENSEYDDAKNEQAFIEGR 70
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LE ++ A+++D ++ G TV L + ++ Y IVG E++ +S
Sbjct: 71 IITLEKMLRNAKIVDKDETDNKVVSIGNTVVLKDLEYDEEVEYTIVGSAESNPTDQKISN 130
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ A+IGK++G+++ V P G YEI+ +
Sbjct: 131 ESPVGEAIIGKKVGEVVEVKVPAGVIEYEIVDI 163
>gi|54020301|ref|YP_116197.1| transcription elongation factor [Mycoplasma hyopneumoniae 232]
gi|81378424|sp|Q5ZZL8|GREA_MYCH2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|53987474|gb|AAV27675.1| transcription elongation factor [Mycoplasma hyopneumoniae 232]
gi|312601624|gb|ADQ90879.1| Transcription elongation factor greA [Mycoplasma hyopneumoniae 168]
Length = 160
Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 2/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
DKI +T + ++I++EL ER +I+ I +AR+ GDLSENAEY A+E Q + E R
Sbjct: 7 DKILLTQQKLEEIEKELEHLINVERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESR 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE II++A++I + R++ G+ VSL SG+ + +QIV +AD +S
Sbjct: 67 IRELETIISKAKIIKAD-LGSSRVSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISN 125
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPIA+AL+G+ GD + V+ + + IL+V+
Sbjct: 126 FSPIAQALLGQHQGDEVEVDV-NEKYSVRILEVI 158
>gi|240047822|ref|YP_002961210.1| transcription elongation factor GreA [Mycoplasma conjunctivae
HRC/581]
gi|239985394|emb|CAT05407.1| Transcription elongation factor [Mycoplasma conjunctivae]
Length = 161
Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 57/155 (36%), Positives = 92/155 (59%), Gaps = 3/155 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++I +T + ++++QEL ER +I+ I AR GDLSENAEY AA+E Q + E R
Sbjct: 7 NQILLTKEKLEELKQELNNLINIERNNVIEEIKYARQQGDLSENAEYDAAREKQGVIESR 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGLVS 121
+ EL+ IIT+A++I +T S I+ G+ V++ + +QIVG +AD +S
Sbjct: 67 IRELDAIITKAQIIRTNTGS-SSISVGSKVTIENLKNNKINTFQIVGSSIDADPFQNKIS 125
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
ISS A+A++G+ GD + V+ + + IL+V
Sbjct: 126 ISSAFAQAIMGQHEGDELDVDTIE-KYSVRILKVE 159
>gi|197303207|ref|ZP_03168249.1| hypothetical protein RUMLAC_01930 [Ruminococcus lactaris ATCC
29176]
gi|197297747|gb|EDY32305.1| hypothetical protein RUMLAC_01930 [Ruminococcus lactaris ATCC
29176]
Length = 167
Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 86/150 (57%), Gaps = 1/150 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ +T +KI+ E+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE R+
Sbjct: 2 RERLTKSDVEKIKAEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKAKNQNESRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LE ++ AE+++ + D I TV L ++ + + Y+IV +GLVSI
Sbjct: 62 RYLERMLKTAEIVEDHS-KADEIGLNNTVELYCEDDDEVETYRIVTSVRGSSLNGLVSIE 120
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153
SPI +AL+G + GD + + Y ++
Sbjct: 121 SPIGKALLGHKEGDRVYIKVNDDFGYYVVI 150
>gi|293381483|ref|ZP_06627478.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus crispatus 214-1]
gi|290921953|gb|EFD98960.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Lactobacillus crispatus 214-1]
Length = 147
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+ +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK + R+ L
Sbjct: 1 MIPEGYQQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 59
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ AE++ ++ G TV L + + + Y++VG EAD+ +G VS SP+
Sbjct: 60 GKQLKYAEIV--KAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPL 117
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+A++ KE G +V AP GE I++V
Sbjct: 118 GQAIMKKEAGTTATVAAPVGEYQVTIVEVK 147
>gi|294056141|ref|YP_003549799.1| GreA/GreB family elongation factor [Coraliomargarita akajimensis
DSM 45221]
gi|293615474|gb|ADE55629.1| GreA/GreB family elongation factor [Coraliomargarita akajimensis
DSM 45221]
Length = 619
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 51/153 (33%), Positives = 88/153 (57%), Gaps = 1/153 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
V+ FD + E ++ P +AI AR +GDL EN+EY+ A++ Q++ R EL
Sbjct: 464 VSQASFDAAKAEYEDLIAKKIPENKEAIVIAREHGDLKENSEYKMARQDQDILLARKNEL 523
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++RA V D S + D + G+ V L E ++G + Y I+G ++D ++ ++S +P+
Sbjct: 524 EVDLSRARVTDFSEATKDNVGIGSVVELKEGSTGKVRRYSILGAWDSDPENDILSYKTPL 583
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL-WI 158
A+ L+GK GD ++ G E+T+ IL + +I
Sbjct: 584 AQQLLGKSGGDSVTTKIGGSEETWTILSIERYI 616
>gi|291520769|emb|CBK79062.1| transcription elongation factor GreA [Coprococcus catus GD/7]
Length = 167
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ K+++E+ R+ R + A+ EAR GDLSEN EYQAAK +N NE R+ L
Sbjct: 5 LSEADIQKMKEEIEHRKVVVRKEALAAVKEAREQGDLSENFEYQAAKREKNRNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A+VI + D + TV++ ++ +++ Y+IV DV GL+SI SP+
Sbjct: 65 ERMVKTAKVIKDHSKD-DEVGLNNTVTVYFEDEDEEETYRIVTTVREDVLHGLISIDSPV 123
Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQV 155
+AL+G +GD + V EI ++
Sbjct: 124 GKALLGHRVGDTVHVQVNDKYGYDVEIRKI 153
>gi|213163103|ref|ZP_03348813.1| transcription elongation factor GreB [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 125
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 1/125 (0%)
Query: 34 ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVS 93
++ A + GD SENA+YQ K+ + R+ L + +++D S ++ FGA V
Sbjct: 1 MTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVE 60
Query: 94 LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
+ + GD ++IVG E + +SI SP+ARAL+ KE+GD+ VN P GE + +
Sbjct: 61 IEN-DDGDTLKFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPVGEANWYVN 119
Query: 154 QVLWI 158
+ ++
Sbjct: 120 AIEYV 124
>gi|325474603|gb|EGC77789.1| transcription elongation factor [Treponema denticola F0402]
Length = 901
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 82/150 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT+K D +EL + + P+ K I A + GDL ENAEY+AAKE Q + L
Sbjct: 747 VTAKMLDLKNKELIEIRDVKIPQNAKDIGFALSLGDLRENAEYKAAKEEQTRLGNALTRL 806
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ + RA++ D +T + ++ FG+ V ++ + ++ Y I+G E+D +G++S SP+
Sbjct: 807 QDELDRAQIFDPTTATAKKVYFGSKVKILNNLTNQEEEYTILGPWESDPANGIISYMSPL 866
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
L + G+ + +++Y+I+ +
Sbjct: 867 GNGLFNHKKGEEVEFEVNDEKRSYKIIDIS 896
>gi|42528195|ref|NP_973293.1| transcript cleavage factor/unknown domain fusion protein [Treponema
denticola ATCC 35405]
gi|41819465|gb|AAS13212.1| transcription elongation protein, GreA/GreB family [Treponema
denticola ATCC 35405]
Length = 901
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 82/150 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT+K D +EL + + P+ K I A + GDL ENAEY+AAKE Q + L
Sbjct: 747 VTAKMLDLKNKELIEIRDVKIPQNAKDIGFALSLGDLRENAEYKAAKEEQTRLGNALTRL 806
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ + RA++ D +T + ++ FG+ V ++ + ++ Y I+G E+D +G++S SP+
Sbjct: 807 QDELDRAQIFDPTTATAKKVYFGSKVKILNNLTNQEEEYTILGPWESDPANGIISYMSPL 866
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
L + G+ + +++Y+I+ +
Sbjct: 867 GNGLFNHKKGEEVEFEVNDEKRSYKIIDIS 896
>gi|72080995|ref|YP_288053.1| transcription elongation factor GreA [Mycoplasma hyopneumoniae
7448]
gi|123761607|sp|Q4A759|GREA_MYCH7 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71914119|gb|AAZ54030.1| transcription elongation factor [Mycoplasma hyopneumoniae 7448]
Length = 160
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 2/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
DKI +T + ++I++EL ER +I+ I +AR+ GDLSENAEY A+E Q + E R
Sbjct: 7 DKILLTQQKLEEIEKELEHLINVERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESR 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE II++A++I + R++ G+ VSL SG+ + +QIV +AD +S
Sbjct: 67 IRELETIISKAKIIKAD-LGSSRVSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISN 125
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPIA+AL+G+ GD + V+ + + IL+V+
Sbjct: 126 FSPIAQALLGQHQGDEVEVDV-NEKYSVRILEVI 158
>gi|323486296|ref|ZP_08091622.1| transcription elongation factor [Clostridium symbiosum WAL-14163]
gi|323400406|gb|EGA92778.1| transcription elongation factor [Clostridium symbiosum WAL-14163]
Length = 178
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T KI++E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE
Sbjct: 10 MDMREQLTESDIKKIREEIEYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNRNE 69
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LEN+I A V+ + S D + TV+L ++ +++ Y++V + GL+
Sbjct: 70 SRIRYLENMIKNARVVSDKSGS-DEVGLNDTVTLYFEDDDEEEVYRLVTSIRGNSLKGLI 128
Query: 121 SISSPIARALIGKELGDIISVNA-PGGEKTYEILQVL 156
SI SP+ +A+ G + GD + V + I ++
Sbjct: 129 SIESPLGKAVRGHKEGDSVYVRLGENAGYSVVIKKIE 165
>gi|225164446|ref|ZP_03726704.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2]
gi|224800944|gb|EEG19282.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2]
Length = 617
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 40/153 (26%), Positives = 82/153 (53%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+++ V+ + +++ ++E ++ P KAI+ AR +GDL EN+EY+ AK+ Q + +
Sbjct: 458 EQLLVSRESYERKREEYETIVSKKIPENSKAIATAREHGDLKENSEYKMAKQDQQVLMAQ 517
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
A +E ++RA + D D I G V L ++G Y ++G ++ + +++
Sbjct: 518 KALIEKELSRARITDFKDAPTDSIGVGNIVGLKIGSTGKTATYTLLGAWDSIPEKNIIAY 577
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+P+ + L+ K +GD + V E+TY + +
Sbjct: 578 KTPLGQGLLTKRVGDTVQVKIGSAEETYTVTSI 610
>gi|238917160|ref|YP_002930677.1| transcription elongation factor GreA [Eubacterium eligens ATCC
27750]
gi|238872520|gb|ACR72230.1| transcription elongation factor GreA [Eubacterium eligens ATCC
27750]
Length = 166
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K+++E+ +R E R + + E RA GDLSEN EY AAK +N NE R+ L
Sbjct: 5 LTKNDIKKMEEEIEYRIHEVRKAALDDVKETRAQGDLSENFEYHAAKRFKNKNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I A VID S+ D + TV ++ ++ + +IV AD SG++SI SP+
Sbjct: 65 QRTIKNATVIDDSSAD-DEVGVNNTVEVLYEDDESTETIKIVTTIRADSLSGMISIESPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+AL+G + GD + V + Y +++
Sbjct: 124 GKALLGHKKGDRVLVQVNPQVEYYVVIK 151
>gi|153814499|ref|ZP_01967167.1| hypothetical protein RUMTOR_00713 [Ruminococcus torques ATCC 27756]
gi|317500540|ref|ZP_07958762.1| transcription elongation factor [Lachnospiraceae bacterium
8_1_57FAA]
gi|145847993|gb|EDK24911.1| hypothetical protein RUMTOR_00713 [Ruminococcus torques ATCC 27756]
gi|316898050|gb|EFV20099.1| transcription elongation factor [Lachnospiraceae bacterium
8_1_57FAA]
Length = 167
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 51/151 (33%), Positives = 86/151 (56%), Gaps = 1/151 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ +T +KI++E+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE R+
Sbjct: 2 REKLTKSDVEKIREEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKEKNRNESRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LE ++ A +++ D I TV + ++ + + Y+IV +GLVSI
Sbjct: 62 RYLERMLKTAVIVE-DESKEDEIGLNNTVEVYCEDDEEVETYRIVTSVRGSSLNGLVSIE 120
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
SP+ +AL+G + GD + + Y I++
Sbjct: 121 SPLGKALLGHKEGDRVFIKVNDDFGYYVIVK 151
>gi|315223125|ref|ZP_07864993.1| transcription elongation factor GreA [Streptococcus anginosus
F0211]
gi|315187814|gb|EFU21561.1| transcription elongation factor GreA [Streptococcus anginosus
F0211]
Length = 160
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 64/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T + +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ ++ D +A G TV++ E D++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEVGETDEEVYMIVGAAGADAFAGK 120
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SPI +ALIGK+ GD +V P G +IL+V
Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKILKVE 157
>gi|169628294|ref|YP_001701943.1| transcription elongation factor GreA [Mycobacterium abscessus ATCC
19977]
gi|238688921|sp|B1MKJ7|GREA_MYCA9 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|169240261|emb|CAM61289.1| Hypothetical transcription elongation factor GreA [Mycobacterium
abscessus]
Length = 164
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQESHDRLKAELDQLIA-NRPVIAAEINERREEGDLRENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L+ ++ A+V + T SG + + + GD + + I QE D + + S S
Sbjct: 67 LQELLNNAKVGEAPTQSGVALPGSVVKVYYDGDKGDTETFLIATRQEGVKDGKLEVYSPS 126
Query: 124 SPIARALIGKELGDIISVNAPGGEK 148
SP+ ALI ++G+ S P G +
Sbjct: 127 SPLGGALIDAKVGETRSYTVPNGTE 151
>gi|302387987|ref|YP_003823809.1| GreA/GreB family elongation factor [Clostridium saccharolyticum
WM1]
gi|302198615|gb|ADL06186.1| GreA/GreB family elongation factor [Clostridium saccharolyticum
WM1]
Length = 167
Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 87/154 (56%), Gaps = 3/154 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DK +T K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE
Sbjct: 1 MFDK--LTENDIKKMQEEIDYRKLVVRKEALEAVKEARAHGDLSENFEYHAAKKDKNQNE 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE +I A++I + D I TV L ++ +++ Y++V + GL+
Sbjct: 59 SRIRYLEKMIKTAQIISDESKD-DEIGLYNTVDLYFEDEDEEETYKLVTTVRGNSMKGLI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+ SP+ +A++G +GD + V Y +++
Sbjct: 118 TSESPLGKAIMGHRVGDRVYVRVNEKTGYYVVVK 151
>gi|266619156|ref|ZP_06112091.1| transcription elongation factor GreA [Clostridium hathewayi DSM
13479]
gi|288869302|gb|EFD01601.1| transcription elongation factor GreA [Clostridium hathewayi DSM
13479]
Length = 186
Score = 119 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 3/154 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DK +T K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE
Sbjct: 20 MYDK--LTKNDIQKMQEEIDYRKLVVRREALEAVKEARAHGDLSENFEYHAAKKDKNQNE 77
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE +I A+++ + D I TV L ++ + + Y++V + GL+
Sbjct: 78 SRIRYLERMIKTAQIVSDESRE-DEIGLYNTVDLYFEDDDEVETYKLVTTVRGNSMKGLI 136
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
S SP+ A++G +GD + V Y +++
Sbjct: 137 SSESPLGSAIMGHRVGDRVYVRINEKAGYYVVVK 170
>gi|307324420|ref|ZP_07603628.1| GreA/GreB family elongation factor [Streptomyces violaceusniger Tu
4113]
gi|306890151|gb|EFN21129.1| GreA/GreB family elongation factor [Streptomyces violaceusniger Tu
4113]
Length = 165
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D+++ EL + R I K I AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYDQLKAELEYLSGPARVEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ +A+V + + +A G V++ + + D + + + A S S
Sbjct: 70 LTQLLQQAKVGE-APADTGVVAPGMVVTIAFDGDPDDTLTFLLASREYASANIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154
P+ + GK++G P G + IL+
Sbjct: 129 PLGSGVNGKKVGQDAEYELPNGRTASVRILE 159
>gi|71894015|ref|YP_279461.1| transcription elongation factor GreA [Mycoplasma hyopneumoniae J]
gi|123775457|sp|Q4A921|GREA_MYCHJ RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|71852142|gb|AAZ44750.1| transcription elongation factor [Mycoplasma hyopneumoniae J]
Length = 160
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 2/154 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
DKI +T + ++I++EL ER +I+ I +AR+ GDLSENAEY A+E Q + E R
Sbjct: 7 DKILLTQQKLEEIEKELEHLINVERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESR 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE II++A++I + R++ G+ VSL SG+ + +QIV +AD +S
Sbjct: 67 IRELETIISKAKIIKAD-LGSSRVSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISN 125
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SPIA+AL+G+ GD + V+ + + IL+V+
Sbjct: 126 FSPIAQALLGQHQGDEVEVDV-NEKYSVRILEVI 158
>gi|328955979|ref|YP_004373312.1| transcription elongation factor GreA [Coriobacterium glomerans PW2]
gi|328456303|gb|AEB07497.1| transcription elongation factor GreA [Coriobacterium glomerans PW2]
Length = 157
Score = 119 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 3/156 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++I +T +G K+ EL WR+ I++ I AR +GDLSEN+EY AK+ Q N
Sbjct: 3 ANEIVLTPEGRQKLVDELDWRETTLSKEIVERIKIARDFGDLSENSEYDDAKDEQAKNAA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ E++ I+ A+ + + S ++ G++VSLV+ + G + +VG E + +S
Sbjct: 63 RIVEIQAILANAQEVKATGHSL-TVSIGSSVSLVDAD-GVATDVSLVGTTETNSLEHKIS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
SP+ A+IG+ G+ + V P G + Y I +V
Sbjct: 121 NESPVGHAIIGRAEGETVEVTMPSGTVRAYTITKVS 156
>gi|332671448|ref|YP_004454456.1| GreA/GreB family elongation factor [Cellulomonas fimi ATCC 484]
gi|332340486|gb|AEE47069.1| GreA/GreB family elongation factor [Cellulomonas fimi ATCC 484]
Length = 161
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D++ EL + E R I I+ AR GDL EN Y AA+E Q E R+ E
Sbjct: 9 WLTQEAYDRLTAELDRLKGEGRAEITARIAAARDEGDLKENGGYHAAREEQAKQEARIRE 68
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGLVSISS 124
LE + ++ + G V+ V +GD+ + + + A + + S +S
Sbjct: 69 LEAKLRNVQIGTPP--DDGVVEPGMVVTAV--VAGDEMVFLLGSREIAGTAEIDVFSPTS 124
Query: 125 PIARALIGKELGDIISVNAPGGEK 148
P+ A+ G ++GD S AP G++
Sbjct: 125 PLGAAINGTKVGDTTSYTAPNGKE 148
>gi|291087950|ref|ZP_06347975.2| transcription elongation factor GreA [Clostridium sp. M62/1]
gi|291073509|gb|EFE10873.1| transcription elongation factor GreA [Clostridium sp. M62/1]
gi|295092686|emb|CBK78793.1| transcription elongation factor GreA [Clostridium cf.
saccharolyticum K10]
Length = 172
Score = 119 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 84/154 (54%), Gaps = 2/154 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ +T KIQ+E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+
Sbjct: 7 REQLTQSDIRKIQEEIDYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNRNESRI 66
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LEN+I A V+ + S D + T++L ++ ++ Y++V + +SI
Sbjct: 67 RYLENMIKNARVVSDKSRS-DEVGLNDTITLYFEDDDEEDVYRLVTSIRGNSLENKISIE 125
Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
SP+ +A+ G ++GD + V E+ ++
Sbjct: 126 SPLGKAVRGHKVGDRVYVEVNDRAGYYVEVRKIE 159
>gi|326331165|ref|ZP_08197461.1| transcription elongation factor GreA [Nocardioidaceae bacterium
Broad-1]
gi|325951060|gb|EGD43104.1| transcription elongation factor GreA [Nocardioidaceae bacterium
Broad-1]
Length = 169
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 71/152 (46%), Gaps = 2/152 (1%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I ++ FDK+ EL + + R I+ IS AR GDL EN Y AA+E Q EG++
Sbjct: 12 IWLSKGAFDKLTAELEYLKGPRRQEILAEISSARDEGDLKENGGYHAAREEQGKLEGQIQ 71
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV--SI 122
+LE ++ +A+ + T + + + I + D G+ S
Sbjct: 72 QLEALLRKADTTVPEDDDVVSVGKLVTFKFEGDDDDEAETRLIASIEMKDYAGGVEISSA 131
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+SPI ALIG +GD ++ P G EIL+
Sbjct: 132 ASPIGAALIGARVGDTVTYEGPRGPLKVEILK 163
>gi|269957418|ref|YP_003327207.1| GreA/GreB family elongation factor [Xylanimonas cellulosilytica DSM
15894]
gi|269306099|gb|ACZ31649.1| GreA/GreB family elongation factor [Xylanimonas cellulosilytica DSM
15894]
Length = 160
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 6/149 (4%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL R I + I+ AR GDL EN Y AA+E Q NE R+ E
Sbjct: 8 WLTQEAHDRLKAELENLSGPARTEIAERIAAARDEGDLKENGGYHAAREEQAKNEARIRE 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISS 124
L + +V + V L G+ + + + A + S +S
Sbjct: 68 LTEKLRTVQVGTPPDDGMVEVGMLVDVRLA----GEPMTFLLGSREIAGTTDVDVYSPTS 123
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEI 152
P+ A+ G +GD +S AP G++ T EI
Sbjct: 124 PLGAAIDGHSIGDTVSYTAPNGKEFTVEI 152
>gi|225573152|ref|ZP_03781907.1| hypothetical protein RUMHYD_01343 [Blautia hydrogenotrophica DSM
10507]
gi|225039481|gb|EEG49727.1| hypothetical protein RUMHYD_01343 [Blautia hydrogenotrophica DSM
10507]
Length = 167
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 84/148 (56%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +KI++E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTKNDVEKIKEEIEYRKLVVRKEALEAVKEARAHGDLSENFEYHAAKKDKNRNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ +E++ + D + TV L + + + +++V + GL+S SP+
Sbjct: 65 ERMLKTSEIVSDESKD-DEVGLFNTVELYFEEDDETEKFKVVTSVRGNSLKGLISTESPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+A++GK+ GD + + Y +++
Sbjct: 124 GKAIMGKKTGDRVEIKVSDSYSYYVVIK 151
>gi|15608220|ref|NP_215596.1| transcription elongation factor GreA [Mycobacterium tuberculosis
H37Rv]
gi|15840516|ref|NP_335553.1| transcription elongation factor GreA [Mycobacterium tuberculosis
CDC1551]
gi|31792271|ref|NP_854764.1| transcription elongation factor GreA [Mycobacterium bovis
AF2122/97]
gi|121637009|ref|YP_977232.1| transcription elongation factor GreA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|148660865|ref|YP_001282388.1| transcription elongation factor GreA [Mycobacterium tuberculosis
H37Ra]
gi|148822289|ref|YP_001287043.1| transcription elongation factor GreA [Mycobacterium tuberculosis
F11]
gi|167967359|ref|ZP_02549636.1| transcription elongation factor GreA [Mycobacterium tuberculosis
H37Ra]
gi|215402903|ref|ZP_03415084.1| transcription elongation factor GreA [Mycobacterium tuberculosis
02_1987]
gi|215410693|ref|ZP_03419501.1| transcription elongation factor GreA [Mycobacterium tuberculosis
94_M4241A]
gi|215426369|ref|ZP_03424288.1| transcription elongation factor GreA [Mycobacterium tuberculosis
T92]
gi|215429946|ref|ZP_03427865.1| transcription elongation factor GreA [Mycobacterium tuberculosis
EAS054]
gi|215445235|ref|ZP_03431987.1| transcription elongation factor GreA [Mycobacterium tuberculosis
T85]
gi|218752760|ref|ZP_03531556.1| transcription elongation factor GreA [Mycobacterium tuberculosis GM
1503]
gi|219556957|ref|ZP_03536033.1| transcription elongation factor GreA [Mycobacterium tuberculosis
T17]
gi|224989482|ref|YP_002644169.1| putative transcription elongation factor [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253799884|ref|YP_003032885.1| transcription elongation factor greA [Mycobacterium tuberculosis
KZN 1435]
gi|254363991|ref|ZP_04980037.1| transcription elongation factor greA (transcript cleavage factor
greA ) [Mycobacterium tuberculosis str. Haarlem]
gi|254550071|ref|ZP_05140518.1| transcription elongation factor GreA [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260186001|ref|ZP_05763475.1| transcription elongation factor GreA [Mycobacterium tuberculosis
CPHL_A]
gi|260200115|ref|ZP_05767606.1| transcription elongation factor GreA [Mycobacterium tuberculosis
T46]
gi|260204309|ref|ZP_05771800.1| transcription elongation factor GreA [Mycobacterium tuberculosis
K85]
gi|289442507|ref|ZP_06432251.1| transcription elongation factor greA [Mycobacterium tuberculosis
T46]
gi|289446666|ref|ZP_06436410.1| transcription elongation factor greA [Mycobacterium tuberculosis
CPHL_A]
gi|289555137|ref|ZP_06444347.1| transcription elongation factor greA [Mycobacterium tuberculosis
KZN 605]
gi|289569068|ref|ZP_06449295.1| transcription elongation factor greA [Mycobacterium tuberculosis
T17]
gi|289573723|ref|ZP_06453950.1| transcription elongation factor greA [Mycobacterium tuberculosis
K85]
gi|289744820|ref|ZP_06504198.1| transcription elongation factor greA [Mycobacterium tuberculosis
02_1987]
gi|289749613|ref|ZP_06508991.1| transcription elongation factor greA [Mycobacterium tuberculosis
T92]
gi|289753143|ref|ZP_06512521.1| transcription elongation factor greA [Mycobacterium tuberculosis
EAS054]
gi|289757165|ref|ZP_06516543.1| transcription elongation factor greA [Mycobacterium tuberculosis
T85]
gi|289761218|ref|ZP_06520596.1| transcription elongation factor greA (transcript cleavage factor
greA) [Mycobacterium tuberculosis GM 1503]
gi|294993263|ref|ZP_06798954.1| transcription elongation factor GreA [Mycobacterium tuberculosis
210]
gi|297633615|ref|ZP_06951395.1| transcription elongation factor GreA [Mycobacterium tuberculosis
KZN 4207]
gi|297730600|ref|ZP_06959718.1| transcription elongation factor GreA [Mycobacterium tuberculosis
KZN R506]
gi|298524578|ref|ZP_07011987.1| transcription elongation factor greA [Mycobacterium tuberculosis
94_M4241A]
gi|306775228|ref|ZP_07413565.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu001]
gi|306781857|ref|ZP_07420194.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu002]
gi|306783784|ref|ZP_07422106.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu003]
gi|306788143|ref|ZP_07426465.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu004]
gi|306792476|ref|ZP_07430778.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu005]
gi|306796872|ref|ZP_07435174.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu006]
gi|306802759|ref|ZP_07439427.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu008]
gi|306806942|ref|ZP_07443610.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu007]
gi|306967143|ref|ZP_07479804.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu009]
gi|306971331|ref|ZP_07483992.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu010]
gi|307079059|ref|ZP_07488229.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu011]
gi|307083622|ref|ZP_07492735.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu012]
gi|313657927|ref|ZP_07814807.1| transcription elongation factor GreA [Mycobacterium tuberculosis
KZN V2475]
gi|54037218|sp|P64280|GREA_MYCBO RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|54041328|sp|P64279|GREA_MYCTU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166200676|sp|A1KHL8|GREA_MYCBP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|166200679|sp|A5U1C6|GREA_MYCTA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799563|sp|C1AM72|GREA_MYCBT RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|2896717|emb|CAA17196.1| PROBABLE TRANSCRIPTION ELONGATION FACTOR GREA (Transcript cleavage
factor greA) [Mycobacterium tuberculosis H37Rv]
gi|13880692|gb|AAK45367.1| transcription elongation factor GreA [Mycobacterium tuberculosis
CDC1551]
gi|31617859|emb|CAD93969.1| PROBABLE TRANSCRIPTION ELONGATION FACTOR GREA (Transcript cleavage
factor greA) [Mycobacterium bovis AF2122/97]
gi|121492656|emb|CAL71125.1| Probable transcription elongation factor greA [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|134149505|gb|EBA41550.1| transcription elongation factor greA (transcript cleavage factor
greA ) [Mycobacterium tuberculosis str. Haarlem]
gi|148505017|gb|ABQ72826.1| transcription elongation factor GreA [Mycobacterium tuberculosis
H37Ra]
gi|148720816|gb|ABR05441.1| transcription elongation factor greA [Mycobacterium tuberculosis
F11]
gi|224772595|dbj|BAH25401.1| putative transcription elongation factor [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253321387|gb|ACT25990.1| transcription elongation factor greA [Mycobacterium tuberculosis
KZN 1435]
gi|289415426|gb|EFD12666.1| transcription elongation factor greA [Mycobacterium tuberculosis
T46]
gi|289419624|gb|EFD16825.1| transcription elongation factor greA [Mycobacterium tuberculosis
CPHL_A]
gi|289439769|gb|EFD22262.1| transcription elongation factor greA [Mycobacterium tuberculosis
KZN 605]
gi|289538154|gb|EFD42732.1| transcription elongation factor greA [Mycobacterium tuberculosis
K85]
gi|289542822|gb|EFD46470.1| transcription elongation factor greA [Mycobacterium tuberculosis
T17]
gi|289685348|gb|EFD52836.1| transcription elongation factor greA [Mycobacterium tuberculosis
02_1987]
gi|289690200|gb|EFD57629.1| transcription elongation factor greA [Mycobacterium tuberculosis
T92]
gi|289693730|gb|EFD61159.1| transcription elongation factor greA [Mycobacterium tuberculosis
EAS054]
gi|289708724|gb|EFD72740.1| transcription elongation factor greA (transcript cleavage factor
greA) [Mycobacterium tuberculosis GM 1503]
gi|289712729|gb|EFD76741.1| transcription elongation factor greA [Mycobacterium tuberculosis
T85]
gi|298494372|gb|EFI29666.1| transcription elongation factor greA [Mycobacterium tuberculosis
94_M4241A]
gi|308216254|gb|EFO75653.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu001]
gi|308325405|gb|EFP14256.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu002]
gi|308331446|gb|EFP20297.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu003]
gi|308335256|gb|EFP24107.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu004]
gi|308339062|gb|EFP27913.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu005]
gi|308342739|gb|EFP31590.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu006]
gi|308346614|gb|EFP35465.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu007]
gi|308350538|gb|EFP39389.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu008]
gi|308355188|gb|EFP44039.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu009]
gi|308359143|gb|EFP47994.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu010]
gi|308363058|gb|EFP51909.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu011]
gi|308366711|gb|EFP55562.1| transcription elongation factor greA [Mycobacterium tuberculosis
SUMu012]
gi|323720471|gb|EGB29557.1| transcription elongation factor greA [Mycobacterium tuberculosis
CDC1551A]
gi|326904695|gb|EGE51628.1| transcription elongation factor greA [Mycobacterium tuberculosis
W-148]
gi|328459629|gb|AEB05052.1| transcription elongation factor greA [Mycobacterium tuberculosis
KZN 4207]
Length = 164
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQESHDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSIS 123
L+++++ A+V + SG + + D + + I QE +D + + S +
Sbjct: 67 LQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGKLEVYSPN 126
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ ALI ++G+ S P G
Sbjct: 127 SPLGGALIDAKVGETRSYTVPNG 149
>gi|283783053|ref|YP_003373807.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Gardnerella vaginalis 409-05]
gi|298253524|ref|ZP_06977314.1| YhbC family protein [Gardnerella vaginalis 5-1]
gi|283441369|gb|ADB13835.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Gardnerella vaginalis 409-05]
gi|297532291|gb|EFH71179.1| YhbC family protein [Gardnerella vaginalis 5-1]
Length = 159
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ I +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q
Sbjct: 1 MAEEKTILLTQEAYDKLKEELAHREGEYREEITERIAAARAEGDLSENGGYQAAREEQGK 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQS 117
NEGR+ EL + A++++ + G+ V+L + +G + Y + A
Sbjct: 61 NEGRINELIVKLRNAKILEAPK--DGTVGNGSLVTL--ELAGREMTYVLGSRDIAVATDY 116
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEI 152
++S SPI A++G GD +S AP G E + I
Sbjct: 117 DVISPESPIGAAIMGAHAGDTVSYAAPNGREISVTI 152
>gi|291298253|ref|YP_003509531.1| transcription elongation factor GreA [Stackebrandtia nassauensis
DSM 44728]
gi|290567473|gb|ADD40438.1| transcription elongation factor GreA [Stackebrandtia nassauensis
DSM 44728]
Length = 167
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 39/154 (25%), Positives = 76/154 (49%), Gaps = 5/154 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ + +D+++ EL RP + I+ R GDL EN Y AAK+ Q E R+
Sbjct: 12 WLSQEAYDRLKAELDEHIA-NRPAMAAEINARREEGDLRENGGYHAAKDEQGKIESRIRY 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123
LE+ + +A+V + + + + G+ V++ + + ++G +E + L S
Sbjct: 71 LEDFLRKAQVGE-APVDVKGVTPGSVVTIAFDDDPEDTETFLLGSREISATTDLTVYSPE 129
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
S + A++G GD ++ AP G E ++L++
Sbjct: 130 SALGAAILGHAEGDTVTYTAPSGAELKVKVLKLE 163
>gi|308235569|ref|ZP_07666306.1| transcription elongation factor GreA [Gardnerella vaginalis ATCC
14018]
gi|311114342|ref|YP_003985563.1| transcription elongation factor GreA [Gardnerella vaginalis ATCC
14019]
gi|310945836|gb|ADP38540.1| transcription elongation factor GreA [Gardnerella vaginalis ATCC
14019]
Length = 159
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 8/156 (5%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ I +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q
Sbjct: 1 MAEEKTILLTKEAYDKLKEELAHREGEYRDEITERIAAARAEGDLSENGGYQAAREEQGK 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQS 117
NEGR+ EL + A++++ + G+ V+L + +G + Y + A
Sbjct: 61 NEGRINELIVKLRNAKILEAPE--AGSVGNGSLVTL--ELAGREMTYVLGSRDIAVATDY 116
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEI 152
++S SPI A++G + GD +S +AP G E + I
Sbjct: 117 DVISPESPIGAAIMGAKAGDTVSYSAPNGREISVTI 152
>gi|302542896|ref|ZP_07295238.1| transcription elongation factor GreA [Streptomyces hygroscopicus
ATCC 53653]
gi|302460514|gb|EFL23607.1| transcription elongation factor GreA [Streptomyces himastatinicus
ATCC 53653]
Length = 165
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D+++ EL + R I K I AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYDQLKAELEYLSGPARIEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + + +A G V++ + + D + + + A S S
Sbjct: 70 LTQLLEHAKVGE-APADTGVVAPGMVVTIAFDGDPDDTLTFLLASREYASADVETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154
P+ + GK++G P G + IL
Sbjct: 129 PLGTGVNGKKVGQDAEYELPNGRTASVRILD 159
>gi|324538258|gb|ADY49528.1| Transcription elongation factor greA [Ascaris suum]
Length = 148
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 51/148 (34%), Positives = 98/148 (66%), Gaps = 3/148 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + I +T + +++++E ++ +RP +++ I EA+++GDLSEN+EY +A+E Q+ E
Sbjct: 1 MNNDIFLTKEQLEELKEEYQYYVHTKRPEVVERIKEAKSFGDLSENSEYDSAREEQSFVE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQSG 118
++ EL+ II+ A++I + + D + G+TV+ + S +K+ Y I VG D ++
Sbjct: 61 AKIKELDAIISNAQII-GAVTNSDTVVLGSTVTYEDTTSKEKQTYTILGVGANPLDQKNP 119
Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146
+S ++P+ARAL+G ++GDI+++ AP G
Sbjct: 120 SISTNTPVARALLGCKVGDIVTIEAPMG 147
>gi|325265032|ref|ZP_08131759.1| transcription elongation factor GreA [Clostridium sp. D5]
gi|324029722|gb|EGB91010.1| transcription elongation factor GreA [Clostridium sp. D5]
Length = 167
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 84/143 (58%), Gaps = 3/143 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M DK +T +KI++E+ R+ R I+A+ EARA+GDLSEN EY AAK+ +N NE
Sbjct: 1 MYDK--LTKSDIEKIREEIEHRKLVVRREAIEAVKEARAHGDLSENFEYHAAKKDKNKNE 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE ++ A ++D ++ D + TV L + + + Y++V +GL+
Sbjct: 59 SRIRYLERMLKTAVIVDDTSQE-DEVGINNTVELYFEEDDEVETYRLVTSVRGSSINGLI 117
Query: 121 SISSPIARALIGKELGDIISVNA 143
SI SPI +A++G+++ D + V
Sbjct: 118 SIESPIGKAILGRKVNDRVFVKV 140
>gi|184201417|ref|YP_001855624.1| transcription elongation factor GreA [Kocuria rhizophila DC2201]
gi|183581647|dbj|BAG30118.1| transcription elongation factor GreA [Kocuria rhizophila DC2201]
Length = 165
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 45/155 (29%), Positives = 83/155 (53%), Gaps = 9/155 (5%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D++++EL + R I+ I +AR+ GDL EN Y AA+E Q NEGR+ +
Sbjct: 8 WLTQEAYDRLKKELDYIAGPYRQEIVDRIEQARSEGDLKENGGYHAAREEQGKNEGRIVQ 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-----LV 120
L ++ A+V + G A + + + +GD+ + + + A+ +G +
Sbjct: 68 LTQLLENAQVGEAPADDG---VIEAGMVVTAEIAGDEMTFLMGSREVAEDLTGGEDLEVF 124
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
S SP+ A+ G ++G+ +S AP G + T +IL+
Sbjct: 125 SERSPMGAAINGHKVGETVSYQAPNGKDITVKILK 159
>gi|160892694|ref|ZP_02073484.1| hypothetical protein CLOL250_00224 [Clostridium sp. L2-50]
gi|156865735|gb|EDO59166.1| hypothetical protein CLOL250_00224 [Clostridium sp. L2-50]
Length = 195
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 82/141 (58%), Gaps = 1/141 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K+++E+ +R+ R ++A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 35 LTESDIKKMEEEIEYRKVVVRKEKLEAVKEARAQGDLSENFEYYAAKKDKNANEKRIRYL 94
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ AE+I + D + TV + + ++ Y+IV DV +G++S SP+
Sbjct: 95 DRMVRTAEIIKDESAD-DEVGLNNTVRVYFEEDEEEDTYRIVTTVREDVLNGIISNISPM 153
Query: 127 ARALIGKELGDIISVNAPGGE 147
+AL+G ++GD + V G+
Sbjct: 154 GKALLGHKVGDRVEVVPGKGD 174
>gi|163841781|ref|YP_001626186.1| transcription elongation factor [Renibacterium salmoninarum ATCC
33209]
gi|162955257|gb|ABY24772.1| transcription elongation factor [Renibacterium salmoninarum ATCC
33209]
Length = 163
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 5/151 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + F+++Q EL R ++K I +AR+ GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAFNRLQGELEQLSGPGRAEVVKKIEQARSEGDLKENGGYHAAKEEQGKIEARIRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124
L ++ A V + S + G +V K + +K + + + A D + S S
Sbjct: 70 LTELLRDAHVGE-SPEDNGVVEPGML--VVAKIANEKTTFLLGSREVAGDTDLDVFSEKS 126
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154
P+ A+ G + GD IS AP G + E++
Sbjct: 127 PLGAAIQGHKAGDKISYTAPNGKDIKVEVIS 157
>gi|240170287|ref|ZP_04748946.1| transcription elongation factor GreA [Mycobacterium kansasii ATCC
12478]
Length = 164
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 4/149 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQESHDRLKAELDQLIA-NRPIIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L+++++ A+V + T SG + + D + + I QE D + + S +
Sbjct: 67 LQDLLSNAKVGEAPTQSGVALPGSVVKVYYNGDESDTETFLIATRQEGVNDGKLEVYSPN 126
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ ALI ++G+ S P G T E+
Sbjct: 127 SPLGGALIDAKVGETRSYKVPNGN-TVEV 154
>gi|41407125|ref|NP_959961.1| transcription elongation factor GreA [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|254774087|ref|ZP_05215603.1| transcription elongation factor GreA [Mycobacterium avium subsp.
avium ATCC 25291]
gi|41395476|gb|AAS03344.1| GreA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|48928144|gb|AAT47750.1| probable transcription elongation factor G [Mycobacterium avium]
Length = 164
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQESHDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L++++ A+V + SG + + D + + I QE D + + S +
Sbjct: 67 LQDLLNNAKVGEAPKQSGVALPGSVVKVYYNGDKSDTETFLIATRQEGVNDGKLEVYSPN 126
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ ALI ++G+ S P G T E+
Sbjct: 127 SPLGGALIDAKVGETRSYTVPNGS-TVEV 154
>gi|229819572|ref|YP_002881098.1| transcription elongation factor GreA [Beutenbergia cavernae DSM
12333]
gi|229565485|gb|ACQ79336.1| transcription elongation factor GreA [Beutenbergia cavernae DSM
12333]
Length = 160
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 4/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T FD+++ E R I I AR GDL EN Y AA+E Q E R+ +
Sbjct: 7 WLTQDAFDRLKAEHDHLTGVGRVEIADKIEAAREEGDLKENGGYHAAREEQAKQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124
LE I+ A+V + G + G V+ +GD+ + + + A D + S SS
Sbjct: 67 LEEILRTAQVGEAPADDG-VVEPGMVVTAK--VAGDEMRFLLGSREVAGDTDLDVYSPSS 123
Query: 125 PIARALIGKELGDIISVNAPGGE 147
P+ A++GK++G+ P G+
Sbjct: 124 PLGAAIMGKKVGEKAEYRTPSGK 146
>gi|323693914|ref|ZP_08108101.1| transcription elongation factor [Clostridium symbiosum WAL-14673]
gi|323502011|gb|EGB17886.1| transcription elongation factor [Clostridium symbiosum WAL-14673]
Length = 169
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 2/157 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M + +T KI++E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE
Sbjct: 1 MDMREQLTESDIKKIREEIEYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNRNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LEN+I A V+ + S D + TV+L ++ +++ Y++V + GL+
Sbjct: 61 SRIRYLENMIKNARVVSDKSGS-DEVGLNDTVTLYFEDDDEEEVYRLVTSIRGNSLKGLI 119
Query: 121 SISSPIARALIGKELGDIISVNA-PGGEKTYEILQVL 156
SI SP+ +A+ G + GD + V + I ++
Sbjct: 120 SIESPLGKAVRGHKEGDSVYVRLGENAGYSVVIKKIE 156
>gi|331694808|ref|YP_004331047.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans
CB1190]
gi|326949497|gb|AEA23194.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans
CB1190]
Length = 163
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 3/152 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + FD+++ EL RP I I+ R GDL EN Y AA+E Q E R+ +
Sbjct: 10 WLTQEAFDRLKNELDQLIA-NRPVIAAEINARREEGDLKENGGYHAAREEQGQQEARIRQ 68
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ A+V + S D + G +++ + ++ ++ + ++S +SP
Sbjct: 69 LQELLRTAQVG-TAPTSTDVASPGTVLTVRYDDDDTEQVLLGSREEGSHGDLQVISPNSP 127
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVL 156
+ AL+G ++G+ + P GG ++ V
Sbjct: 128 LGAALLGAKVGETREYSLPDGGTMKVTLVAVE 159
>gi|182436357|ref|YP_001824076.1| transcription elongation factor GreA [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326776981|ref|ZP_08236246.1| transcription elongation factor GreA [Streptomyces cf. griseus
XylebKG-1]
gi|178464873|dbj|BAG19393.1| putative transcription elongation factor [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326657314|gb|EGE42160.1| transcription elongation factor GreA [Streptomyces cf. griseus
XylebKG-1]
Length = 165
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +++++ EL R I I+ AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNQLKAELEHLSGPARTEIAVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + G + G V++ + + D + + + A + S S
Sbjct: 70 LTQLLEHAKVGEAPADDG-VVEPGMVVTIAFDGDENDTLTFLLASREYASTEIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
P+ + GK GD P G+ + +IL
Sbjct: 129 PLGLGVNGKRTGDDADYELPNGKTASVKILA 159
>gi|237785171|ref|YP_002905876.1| transcription elongation factor GreA [Corynebacterium
kroppenstedtii DSM 44385]
gi|237758083|gb|ACR17333.1| Transcription elongation factor [Corynebacterium kroppenstedtii DSM
44385]
Length = 168
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 4/152 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D++++EL + RP I I+E R GDL EN Y AA+E Q E R+A
Sbjct: 9 WLTQEAYDRLKKELDDLKA-NRPVIAAEINERREEGDLKENGGYHAAREQQGQEEARIAY 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQSGLVSIS 123
LE ++ A + + + SG + + + D + + I G ++ S
Sbjct: 68 LEELLDSATIGEAPSQSGVALVGSVVHVYYDGDEDDTETFLIGTRGVHSSNTDLETYSTD 127
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
+P+ A++G + G+ P G + I++
Sbjct: 128 APLGAAIVGAKEGETREYQTPNGSTVSVTIVK 159
>gi|118462687|ref|YP_880450.1| transcription elongation factor GreA [Mycobacterium avium 104]
gi|118163974|gb|ABK64871.1| transcription elongation factor GreA [Mycobacterium avium 104]
Length = 159
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ +
Sbjct: 3 WLTQESHDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 61
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L++++ A+V + SG + + D + + I QE D + + S +
Sbjct: 62 LQDLLNNAKVGEAPKQSGVALPGSVVKVYYNGDKSDTETFLIATRQEGVNDGKLEVYSPN 121
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ ALI ++G+ S P G T E+
Sbjct: 122 SPLGGALIDAKVGETRSYTVPNGS-TVEV 149
>gi|297243708|ref|ZP_06927639.1| YhbC family protein [Gardnerella vaginalis AMD]
gi|296888459|gb|EFH27200.1| YhbC family protein [Gardnerella vaginalis AMD]
Length = 159
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 8/156 (5%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ I +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q
Sbjct: 1 MAEEKTILLTQEAYDKLKEELAHREGEYREEITERIAAARAEGDLSENGGYQAAREEQGK 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQS 117
NEGR+ EL + A++++ + G+ V+L + +G + Y + A
Sbjct: 61 NEGRINELIVKLRNAKILEAPK--DGTVGNGSLVTL--ELAGREMTYVLGSRDIAVATDY 116
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEI 152
++S SPI A++G GD +S AP G E + I
Sbjct: 117 DVISPESPIGAAIMGAHTGDTVSYAAPNGREISVTI 152
>gi|152002511|dbj|BAF73535.1| transcription elongation factor [Onion yellows phytoplasma OY-W]
Length = 156
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/156 (31%), Positives = 89/156 (57%), Gaps = 4/156 (2%)
Query: 1 MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +KI +T G K+++EL + ++ +R ++A+ E R GDLSENA+Y AA+ Q L
Sbjct: 1 MNNKIYELTQSGIKKLKKELTFLKEVKRKENLEALKEEREQGDLSENADYDAARNEQTLI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R++E++NI+ V+ +S ++ G VSL ++ ++ ++V EAD +
Sbjct: 61 EHRISEIQNILKNVRVVKVSKE--REVSIGKKVSLELLHTKQQQEIELVSTLEADPFANK 118
Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
+SI SP+ + + G ++GD++ V G +I+
Sbjct: 119 ISIESPLGQNIKGHQIGDVVFVTGETGNTFRVKIVD 154
>gi|256372307|ref|YP_003110131.1| GreA/GreB family elongation factor [Acidimicrobium ferrooxidans DSM
10331]
gi|256008891|gb|ACU54458.1| GreA/GreB family elongation factor [Acidimicrobium ferrooxidans DSM
10331]
Length = 160
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 81/154 (52%), Gaps = 1/154 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ ++ ++ +D + QEL + R I KAI ARA GDLSEN +Y AAK+ Q E
Sbjct: 1 MSEVEISQATYDALVQELEELTTQGRIEIAKAIEAARALGDLSENGDYHAAKDAQGKMEA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +++ I+ A V+ + + D + G V L + D ++Y + +E +VS
Sbjct: 61 RIRQIQQILQSARVV-SADLPTDEVRPGVVVGLRYEGEDDVEHYLVGSIEERHPGLEVVS 119
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+SP+ AL+G +G + AP G +++++
Sbjct: 120 PTSPLGEALLGARVGAWVEYEAPRGTLKVQVVEI 153
>gi|224534276|ref|ZP_03674854.1| transcription elongation factor GreA [Borrelia spielmanii A14S]
gi|224514378|gb|EEF84694.1| transcription elongation factor GreA [Borrelia spielmanii A14S]
Length = 900
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 73/145 (50%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G + Y I+G E++ G++S SP L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEITGKDETYLILGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
+ GD ++ Y + ++
Sbjct: 871 DSKEGDSLNFIINNTNFRYFVKKIE 895
>gi|325067374|ref|ZP_08126047.1| transcription elongation factor GreA [Actinomyces oris K20]
gi|326772303|ref|ZP_08231588.1| transcription elongation factor GreA [Actinomyces viscosus C505]
gi|326638436|gb|EGE39337.1| transcription elongation factor GreA [Actinomyces viscosus C505]
Length = 161
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 1 MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M ++ +T + +D++ EL R+ ER I + + AR GDL ENA Y AA+E
Sbjct: 1 MSEQSQGTWLTQEAYDRLAAELEHRKTTERKEIAQRVEAARQEGDLRENAGYHAAREEAG 60
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQ 116
LNE R+ +LE + A++ + + T + G ++ + + G + DV
Sbjct: 61 LNEARIIQLEETLENAQIGEAADDGSVSAGTIVTAKVA----GKEQVFALGGQEITEDVP 116
Query: 117 SG--LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
G + S +P+ +AL+G GD +S AP G K EI++V
Sbjct: 117 DGVKVFSPDAPLGQALMGHRAGDTVSYEAPNGRKIQAEIVKVE 159
>gi|203287597|ref|YP_002222612.1| transcription elongation factor EF [Borrelia recurrentis A1]
gi|201084817|gb|ACH94391.1| transcription elongation factor EF [Borrelia recurrentis A1]
Length = 900
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 46/145 (31%), Positives = 74/145 (51%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L + I
Sbjct: 751 LSKKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNTLMSEID 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VIDI + + FG V+++ K++ +++Y I G E++ G++S SP L+
Sbjct: 811 VAKVIDIKELQSSVVGFGTKVTMINKDTEREESYLIFGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
GD + Y + ++
Sbjct: 871 DSREGDSLDFVINNTHFQYYVKKIE 895
>gi|218290642|ref|ZP_03494733.1| transcription elongation factor GreA [Alicyclobacillus
acidocaldarius LAA1]
gi|218239307|gb|EED06505.1| transcription elongation factor GreA [Alicyclobacillus
acidocaldarius LAA1]
Length = 133
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 78/133 (58%), Gaps = 1/133 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M DK + +T +G K+++EL + +R + + I A +YGD+SEN+EY+ AK Q
Sbjct: 1 MADKEVLLTPEGLRKLEEELELLKSVKRREVAERIKVAISYGDISENSEYEDAKNEQAFI 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ LE + A VI+ + + ++ G+TV +++ + ++ Y IVG EA+
Sbjct: 61 EGRIMTLEKQLRNARVINEDEVDTNVVSIGSTVKVLDLDLDEEVEYTIVGSAEANPAENK 120
Query: 120 VSISSPIARALIG 132
+S SP+ +AL+G
Sbjct: 121 ISNESPVGKALLG 133
>gi|302672254|ref|YP_003832214.1| transcription elongation factor GreA/GreB2 [Butyrivibrio
proteoclasticus B316]
gi|302396727|gb|ADL35632.1| transcription elongation factor GreA/GreB2 [Butyrivibrio
proteoclasticus B316]
Length = 167
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 85/151 (56%), Gaps = 2/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K + ++ E+ R+ R +++ + EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTRKDIEDMEAEIEHRKVVVRKELLEHVKEARAQGDLSENFEYYAAKKAKNQNESRIRFL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A+VID +T D++ +V++ + G ++ Y+IV + GL+S+ SP+
Sbjct: 65 ERMIKTAKVIDDNTTE-DQVGMNKSVTVRIEEDGSEETYKIVTTMRQNSLKGLISVESPL 123
Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+ L+G +GD +++ I ++
Sbjct: 124 GKQLLGHRVGDRVNIKVSDNYSYEITITKIE 154
>gi|187918011|ref|YP_001883574.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
hermsii DAH]
gi|119860859|gb|AAX16654.1| transcription elongation factor GreA [Borrelia hermsii DAH]
Length = 901
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 73/145 (50%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LSKKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNSLMLEID 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+V+D + + FG V+++ K++G ++ Y I G E++ G++S SP L+
Sbjct: 812 VAKVVDTKELQSSVVGFGTKVTMINKDTGREEFYLIFGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
+ GD + Y + ++
Sbjct: 872 DAKEGDNLDFVINDTRFQYYVKKIE 896
>gi|166032355|ref|ZP_02235184.1| hypothetical protein DORFOR_02058 [Dorea formicigenerans ATCC
27755]
gi|166028078|gb|EDR46835.1| hypothetical protein DORFOR_02058 [Dorea formicigenerans ATCC
27755]
Length = 166
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 88/147 (59%), Gaps = 3/147 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KI++E+ +R+ R + ++A+ EARA GDLSEN EY+AAK+ +N NE R+ L
Sbjct: 5 LTESDVKKIKEEIEYRKIVVRKKELEAVKEARAQGDLSENFEYKAAKQDKNRNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A ++ + D I TV L ++ + + Y+IV + +GL+SI SP+
Sbjct: 65 ERMLKTANIVSDDS-KEDEIGINNTVDLYFEDDEEVETYRIVTSVRGNSLAGLISIESPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEIL 153
+A++G ++GD + + P G+ Y ++
Sbjct: 124 GKAVLGHKVGDRVKI--PAGDDGYYVV 148
>gi|223936169|ref|ZP_03628082.1| GreA/GreB family elongation factor [bacterium Ellin514]
gi|223895031|gb|EEF61479.1| GreA/GreB family elongation factor [bacterium Ellin514]
Length = 170
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 14/154 (9%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ EL Q E+R + A G+ S NA+ L +
Sbjct: 30 KNYLTPDGAQRLRAELNRLQAEKRSQT--------ATGEFSGNAQ-----TEMQLVGQHI 76
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LE + AE++ +++ FGATV++ + SG++ Y+IVG E D+ VS
Sbjct: 77 LQLEQSLATAEIVPPPPQPWEQVRFGATVTVRD-ESGNETRYRIVGVDETDIDRDWVSWL 135
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPIARALI +G+ + P GEK EI+ + +
Sbjct: 136 SPIARALINARIGERVHFRFPAGEKQLEIVSITY 169
>gi|160946713|ref|ZP_02093916.1| hypothetical protein PEPMIC_00671 [Parvimonas micra ATCC 33270]
gi|158447097|gb|EDP24092.1| hypothetical protein PEPMIC_00671 [Parvimonas micra ATCC 33270]
Length = 160
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Query: 24 QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83
+R I + I AR +GDLSEN+EY AK Q E ++ +L+N+I A++ID +
Sbjct: 25 TVKRKEIAEKIKIARDFGDLSENSEYDEAKNEQAQIEEKIVKLDNMIANAKIIDEVELDT 84
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
+ GATV+LV+ S K Y IVG E++ G +S SP+ +A++GK+ G+ + V
Sbjct: 85 KTVNVGATVTLVQVESKKKLEYTIVGSAESNPLEGKISNESPVGKAILGKKKGNKVQVQL 144
Query: 144 PGG-EKTYEILQVL 156
P G Y+I +
Sbjct: 145 PNGNVVEYKIQNIK 158
>gi|119952935|ref|YP_945144.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
turicatae 91E135]
gi|119861706|gb|AAX17474.1| transcription elongation factor GreA [Borrelia turicatae 91E135]
Length = 900
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 74/145 (51%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L + I
Sbjct: 751 LSKKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNSLMSEID 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V+++ K++ +++Y I G E++ G++S SP L+
Sbjct: 811 FAKVIDTKELQSSVVGFGTKVTMINKDTKREESYLIFGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
+ GD + Y + ++
Sbjct: 871 DAKEGDNLDFVINDTHFQYYVKKIE 895
>gi|325003219|ref|ZP_08124331.1| transcription elongation factor G [Pseudonocardia sp. P1]
Length = 162
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 6/154 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +D+++ EL E RP I I+ R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQDAYDRLKSELDGLI-ENRPVIAAEINARREEGDLKENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123
L+ ++ A+V + S D A G ++L ++ D + ++G +E L +S +
Sbjct: 67 LQELLRTAQVG-TAPSSADEAAPGTVLTLKYEDDDDTEKV-LLGSREEGSHGDLQVISPN 124
Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
SP+ AL+G + GD P GG +++V
Sbjct: 125 SPLGAALLGAKPGDTREYQLPDGGSMKVSLVEVE 158
>gi|313906219|ref|ZP_07839565.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6]
gi|313468949|gb|EFR64305.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6]
Length = 167
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 2/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K+Q+E+ R ERP+I+KA+ EARA GDLSEN EY AA++ N R+ L
Sbjct: 5 LTRSDIRKMQEEIDHRTLVERPKILKAVQEARAQGDLSENFEYYAARKANRENNSRINYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+I A +I + D++ V++ + + + Y+IV AD G ++ +SP+
Sbjct: 65 TKMIETA-IIVEDRSAEDQVGLNKKVTVKFPDEEETETYKIVTSVRADSMEGRITPNSPL 123
Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156
RAL+GK GD+ V E EI+QV
Sbjct: 124 GRALMGKRAGDLAHVKVNDKLEYDVEIVQVE 154
>gi|239943845|ref|ZP_04695782.1| transcription elongation factor GreA [Streptomyces roseosporus NRRL
15998]
gi|239990301|ref|ZP_04710965.1| transcription elongation factor GreA [Streptomyces roseosporus NRRL
11379]
gi|291447308|ref|ZP_06586698.1| transcription elongation factor [Streptomyces roseosporus NRRL
15998]
gi|291350255|gb|EFE77159.1| transcription elongation factor [Streptomyces roseosporus NRRL
15998]
Length = 165
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 3/151 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +++++ EL + R I I+ AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQEAYNQLKAELEYLSGPARTEIAVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L ++ A+V + G + G V++ + + D + + + A + S S
Sbjct: 70 LTQLLEHAKVGEAPADDG-VVEPGMVVTIAFDGDEDDTLTFLLASREYASTEIETYSPQS 128
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154
P+ + GK GD P G + +IL
Sbjct: 129 PLGLGVNGKRTGDDADYELPNGRTASVKILA 159
>gi|312138729|ref|YP_004006065.1| transcription elongation factor grea/greb [Rhodococcus equi 103S]
gi|325676579|ref|ZP_08156257.1| transcription elongation factor GreA [Rhodococcus equi ATCC 33707]
gi|311888068|emb|CBH47380.1| transcription elongation factor GreA/GreB [Rhodococcus equi 103S]
gi|325552757|gb|EGD22441.1| transcription elongation factor GreA [Rhodococcus equi ATCC 33707]
Length = 164
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQESHDRLKNELDQLIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L+ ++ A+V + T SG + + + D + + I +E D + + S +
Sbjct: 67 LQELLNNAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDNKLEVYSPN 126
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ AL+ ++G+ P G
Sbjct: 127 SPLGGALLNAKVGETREYTLPNG 149
>gi|227871734|ref|ZP_03990142.1| possible transcription elongation factor [Oribacterium sinus F0268]
gi|227842422|gb|EEJ52644.1| possible transcription elongation factor [Oribacterium sinus F0268]
Length = 167
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 4/153 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T + KI+ E++ R+ E RP++I+A+ EARA GDLSEN EY AAK+ +N NE
Sbjct: 1 MSEE--LTREDVRKIEAEIQKRKLEIRPKLIEAVKEARAQGDLSENFEYYAAKKEKNQNE 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE ++ A+VI + G + TV + +++ Y++V G +
Sbjct: 59 SRIRYLERVLKFAKVISTKSEEG-VVGINDTVVVYFPEDKEEECYRLVTSIRGQSLEGRI 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
S SP+ +AL+GK +G+ + V GG +Y +L
Sbjct: 118 SNQSPLGKALMGKRVGEEVEVFLEGGS-SYTVL 149
>gi|26513900|gb|AAN78348.1| transcription elongation factor GreA [Listonella anguillarum]
Length = 127
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/128 (42%), Positives = 93/128 (72%), Gaps = 2/128 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +++EL + RP+I +AI+ AR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRGEQFVREELDRLLK-LRPQITQAIATARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VIDI+ M + ++ FG+TV+L++ ++ + K YQIVG+ EA+++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDITKMENTGKVIFGSTVTLIDSDTDEVKRYQIVGEDEAEIKSGRI 119
Query: 121 SISSPIAR 128
S+SSPIAR
Sbjct: 120 SVSSPIAR 127
>gi|203284058|ref|YP_002221798.1| transcription elongation factor EF [Borrelia duttonii Ly]
gi|201083501|gb|ACH93092.1| transcription elongation factor EF [Borrelia duttonii Ly]
Length = 900
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 46/145 (31%), Positives = 74/145 (51%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
K Q+EL++ + E P K I +AR GDL ENAEY +AKE Q R+ L + I
Sbjct: 751 LSKKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNTLMSEID 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VIDI + + FG V+++ K++ +++Y I G E++ G++S SP L+
Sbjct: 811 VAKVIDIKELQSSVVGFGTKVTMINKDTEREESYLIFGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
GD + Y + ++
Sbjct: 871 DSREGDSLDFVINDTHFQYYVKKIE 895
>gi|224532797|ref|ZP_03673413.1| transcription elongation factor GreA [Borrelia burgdorferi WI91-23]
gi|224512285|gb|EEF82670.1| transcription elongation factor GreA [Borrelia burgdorferi WI91-23]
Length = 901
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 75/145 (51%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
+ GD ++ Y + ++
Sbjct: 872 DSKEGDSLNFVINNTNFKYFVKKIE 896
>gi|291458829|ref|ZP_06598219.1| transcription elongation factor GreA [Oribacterium sp. oral taxon
078 str. F0262]
gi|291418083|gb|EFE91802.1| transcription elongation factor GreA [Oribacterium sp. oral taxon
078 str. F0262]
Length = 167
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/146 (36%), Positives = 86/146 (58%), Gaps = 2/146 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +I +E+ R+ RP++I+A+ EAR++GDLSEN EY AAK N NE R+A L
Sbjct: 5 LTKADVKRIWEEIEKRKLSLRPKLIEAVKEARSHGDLSENFEYYAAKREMNQNESRIAYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ A ++ D + TV L+ + G++++Y+IV S L+S SP+
Sbjct: 65 ERMLRFATIV-SDRSERDEVGLNDTVRLLFEEEGEEESYRIVTSIRGHSLSNLISNKSPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
+AL+ +GD ++V PGG K+Y +
Sbjct: 124 GKALLKHRVGDRVTVR-PGGGKSYTV 148
>gi|294790721|ref|ZP_06755879.1| transcription elongation factor GreA [Scardovia inopinata F0304]
gi|294458618|gb|EFG26971.1| transcription elongation factor GreA [Scardovia inopinata F0304]
Length = 160
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 7/155 (4%)
Query: 3 DKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
DK+ + T + +DK+++EL +R+ E R I + I+ ARA GDLSEN YQAA+E Q NEG
Sbjct: 4 DKVYMLTQEAYDKLREELTYREGELREEIKEKIAAARAEGDLSENGGYQAAREEQGKNEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120
R+ EL + ++++ + ++ G+ V L + +G + Y + A +V
Sbjct: 64 RIQELTVKLRDSQILKAP--NPGKVGPGSLVVL--EIAGREMTYVLGSHDLAVATDYDIV 119
Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
S SPI A+ GK+ GD +S AP G T I +
Sbjct: 120 SPESPIGAAINGKKTGDTVSYTAPNGRNITVTIKE 154
>gi|118616090|ref|YP_904422.1| transcription elongation factor GreA [Mycobacterium ulcerans Agy99]
gi|183984358|ref|YP_001852649.1| transcription elongation factor GreA [Mycobacterium marinum M]
gi|118568200|gb|ABL02951.1| transcription elongation factor GreA [Mycobacterium ulcerans Agy99]
gi|183177684|gb|ACC42794.1| transcription elongation factor GreA [Mycobacterium marinum M]
Length = 164
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 7/155 (4%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQESHDRLKAELDHLIA-NRPIIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L++++ A+V + SG + + D + + I QE D + + S +
Sbjct: 67 LQDLLNNAKVGEAPKQSGIALPGSVVKVYYNGDQSDSETFLIATRQEGVNDGKLEVYSPN 126
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+ ALI ++G+ S P G +++V I
Sbjct: 127 SPLGGALIDAKVGETRSYTVPNGS----VIEVTLI 157
>gi|75761030|ref|ZP_00741032.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74491486|gb|EAO54700.1| Transcription elongation factor greA [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 151
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 46/119 (38%), Positives = 69/119 (57%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+T +G K++ EL + R +++ I AR++GDLSEN+EY AAK+ Q EGR+
Sbjct: 24 YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 83
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LEN+I A +I + + G TV+ E +GD++ Y IVG EAD G +S
Sbjct: 84 QLENMIRNAVIIKDNGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNE 142
>gi|319441736|ref|ZP_07990892.1| transcription elongation factor GreA [Corynebacterium variabile DSM
44702]
Length = 173
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 5/152 (3%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M D +T + +D++ EL + RP + I+E R GDL EN Y AA+E Q
Sbjct: 1 MADNQTTWLTQESYDRLNDELAALKG-NRPALAAEINERREEGDLKENGGYHAAREQQGQ 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQ 116
E R+ LE ++ A + + SG + + + DK+ + I G + ++
Sbjct: 60 EEARIVYLEELLDNATIGEAPAESGVALVGSVVHVYYDGDEDDKETFLIGTRGLESSNPD 119
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEK 148
S +P+ AL+G + G+ AP G K
Sbjct: 120 LETYSTDAPLGAALVGAKEGETREYAAPNGSK 151
>gi|254820658|ref|ZP_05225659.1| transcription elongation factor GreA [Mycobacterium intracellulare
ATCC 13950]
gi|296169944|ref|ZP_06851553.1| transcription elongation factor GreA [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295895408|gb|EFG75113.1| transcription elongation factor GreA [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 164
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 4/149 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQESHDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L++++ A+V + SG + + D + + I QE D + + S +
Sbjct: 67 LQDLLNNAKVGEAPKQSGVALPGSVVKVYYNGDKSDTETFLIATRQEGVNDGKLEVYSPN 126
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+ ALI ++G+ S P G T E+
Sbjct: 127 SPLGGALIDAKVGETRSYVVPNGN-TVEV 154
>gi|291550053|emb|CBL26315.1| transcription elongation factor GreA [Ruminococcus torques L2-14]
Length = 167
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 53/150 (35%), Positives = 86/150 (57%), Gaps = 1/150 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ +T +KIQ E+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +N NE R+
Sbjct: 2 RERLTKNDVEKIQAEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKAKNQNESRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LE ++ AE+++ + D I TV L ++ + + Y+IV +GLVSI
Sbjct: 62 RYLERMLKTAEIVEDHS-KEDEIGLNNTVELYCEDDDEVETYRIVTSVRGSSLNGLVSIE 120
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153
SPI +AL+G + G+ + + Y ++
Sbjct: 121 SPIGKALLGHKEGERVYIKVNDDFGYYVVI 150
>gi|238924211|ref|YP_002937727.1| transcription elongation factor GreA [Eubacterium rectale ATCC
33656]
gi|238875886|gb|ACR75593.1| transcription elongation factor GreA [Eubacterium rectale ATCC
33656]
gi|291524937|emb|CBK90524.1| Transcription elongation factor [Eubacterium rectale DSM 17629]
gi|291529078|emb|CBK94664.1| Transcription elongation factor [Eubacterium rectale M104/1]
Length = 167
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 4/152 (2%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ K++ E+ +R+ R + + + ARA GDLSEN EY+AAK+ +N NE R+ L
Sbjct: 5 LTANDIKKMEDEIEYRKLVVRKKALDDVKVARAQGDLSENFEYKAAKQFKNQNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A VI + D + TV + ++ + + Y+IV + L+S SP+
Sbjct: 65 EKMIKTAVVISDESKD-DEVGMFNTVDVYFEDDDETETYKIVTTVRGNSLKNLISKESPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTY--EILQVL 156
A+ G ++GD V + +Y +I+++
Sbjct: 124 GAAIFGHKVGDRCEVKV-NDDYSYFVKIMKIQ 154
>gi|227876654|ref|ZP_03994763.1| elongation factor GreA [Mobiluncus mulieris ATCC 35243]
gi|269976185|ref|ZP_06183181.1| transcription elongation factor GreA [Mobiluncus mulieris 28-1]
gi|306817605|ref|ZP_07451348.1| transcription elongation factor GreA [Mobiluncus mulieris ATCC
35239]
gi|307699804|ref|ZP_07636855.1| putative transcription elongation factor GreA [Mobiluncus mulieris
FB024-16]
gi|227842551|gb|EEJ52751.1| elongation factor GreA [Mobiluncus mulieris ATCC 35243]
gi|269935514|gb|EEZ92052.1| transcription elongation factor GreA [Mobiluncus mulieris 28-1]
gi|304649647|gb|EFM46929.1| transcription elongation factor GreA [Mobiluncus mulieris ATCC
35239]
gi|307614842|gb|EFN94060.1| putative transcription elongation factor GreA [Mobiluncus mulieris
FB024-16]
Length = 161
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 55/157 (35%), Positives = 79/157 (50%), Gaps = 8/157 (5%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K +T FD++Q EL R R I K I AR GDL EN Y AA++ Q NE R
Sbjct: 6 KKKWMTQAAFDRLQSELDERSGSIRAEITKKIDLARREGDLKENGGYHAARDEQAHNETR 65
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD--VQSGLV 120
+ EL+ I+ AEV + + I+ G +VE G +K ++G + AD + +
Sbjct: 66 ILELQEILKHAEVGEAT--DDGTISPGC---VVEAKVGKRKIRFLLGSRVADEGMDIDVF 120
Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
S +P+ AL+G GD + AP G+K E+L V
Sbjct: 121 SPDAPLGAALLGHREGDQVEYLAPTGKKIQVEVLSVS 157
>gi|145222636|ref|YP_001133314.1| transcription elongation factor GreA [Mycobacterium gilvum PYR-GCK]
gi|315443101|ref|YP_004075980.1| transcription elongation factor GreA [Mycobacterium sp. Spyr1]
gi|145215122|gb|ABP44526.1| transcription elongation factor GreA [Mycobacterium gilvum PYR-GCK]
gi|315261404|gb|ADT98145.1| transcription elongation factor GreA [Mycobacterium sp. Spyr1]
Length = 164
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTEEAYDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREQQGQEEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L+ ++ A+V + SG + + + D + + I ++ D + + S +
Sbjct: 67 LQELLNDAKVGEAPKQSGIALPGSVVKVYYDDDENDTETFLIGTREQGVNDGKLEVYSPN 126
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ ALI ++G+ S P G
Sbjct: 127 SPLGGALIDAKVGESRSYTVPSG 149
>gi|225549223|ref|ZP_03770196.1| transcription elongation factor GreA [Borrelia burgdorferi 94a]
gi|225370081|gb|EEG99521.1| transcription elongation factor GreA [Borrelia burgdorferi 94a]
Length = 901
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 74/145 (51%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
GD ++ Y + ++
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896
>gi|195942372|ref|ZP_03087754.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
burgdorferi 80a]
Length = 901
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 74/145 (51%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
GD ++ Y + ++
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896
>gi|195941869|ref|ZP_03087251.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
burgdorferi 80a]
gi|195942362|ref|ZP_03087744.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
burgdorferi 80a]
gi|195942405|ref|ZP_03087787.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
burgdorferi 80a]
Length = 901
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 74/145 (51%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
GD ++ Y + ++
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896
>gi|15594477|ref|NP_212266.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
burgdorferi B31]
gi|218249878|ref|YP_002374660.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia burgdorferi ZS7]
gi|223889075|ref|ZP_03623664.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia burgdorferi 64b]
gi|7531126|sp|O51157|GREA_BORBU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|2688004|gb|AAC66506.1| transcription elongation factor (greA) [Borrelia burgdorferi B31]
gi|218165066|gb|ACK75127.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia burgdorferi ZS7]
gi|223885324|gb|EEF56425.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia burgdorferi 64b]
Length = 901
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 74/145 (51%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
GD ++ Y + ++
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896
>gi|312149070|gb|ADQ29141.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia burgdorferi N40]
Length = 901
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 74/145 (51%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
GD ++ Y + ++
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896
>gi|226320676|ref|ZP_03796234.1| transcription elongation factor GreA [Borrelia burgdorferi 29805]
gi|226233892|gb|EEH32615.1| transcription elongation factor GreA [Borrelia burgdorferi 29805]
Length = 901
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 74/145 (51%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
GD ++ Y + ++
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896
>gi|225549861|ref|ZP_03770823.1| transcription elongation factor GreA [Borrelia burgdorferi 118a]
gi|225369552|gb|EEG99003.1| transcription elongation factor GreA [Borrelia burgdorferi 118a]
gi|312148364|gb|ADQ31023.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia burgdorferi JD1]
Length = 901
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 74/145 (51%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
GD ++ Y + ++
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896
>gi|320538381|ref|ZP_08038256.1| prokaryotic transcription elongation factor, GreA/GreB protein
[Treponema phagedenis F0421]
gi|320144766|gb|EFW36507.1| prokaryotic transcription elongation factor, GreA/GreB protein
[Treponema phagedenis F0421]
Length = 893
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 81/150 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT+K + ++EL+ + P K I +A GDL ENAEY+AA+E Q + L
Sbjct: 740 VTAKMLEAKKKELQEIIDIKIPENSKEIGKALELGDLRENAEYKAAREEQTRLNNMVTRL 799
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I RA+V D + + +++FG V L SG+ + Y I+G E++ + G++S SP+
Sbjct: 800 QEEIERAQVFDPTATTIGKVSFGTIVELKNHTSGENEVYTILGPWESNPEGGVISYMSPL 859
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
L+ + G+ +S EK YEIL +
Sbjct: 860 GTNLLNHKKGEKLSFTISEDEKIYEILNIS 889
>gi|120405620|ref|YP_955449.1| transcription elongation factor GreA [Mycobacterium vanbaalenii
PYR-1]
gi|166200681|sp|A1TE43|GREA_MYCVP RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|119958438|gb|ABM15443.1| transcription elongation factor GreA [Mycobacterium vanbaalenii
PYR-1]
Length = 164
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTEESYDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREQQGQEEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSIS 123
L+ ++ A+V + SG + + + D + + I ++ +D + + S +
Sbjct: 67 LQELLNNAKVGEAPKQSGIALPGSVVKVYYDDDEKDTETFLIGTREQGVSDGKLEVYSPN 126
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ ALI ++G+ S P G
Sbjct: 127 SPLGGALIDAKVGESRSYTVPSG 149
>gi|216264351|ref|ZP_03436343.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia burgdorferi 156a]
gi|221217376|ref|ZP_03588847.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia burgdorferi 72a]
gi|224533979|ref|ZP_03674563.1| transcription elongation factor GreA [Borrelia burgdorferi
CA-11.2a]
gi|215980824|gb|EEC21631.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia burgdorferi 156a]
gi|221192654|gb|EEE18870.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia burgdorferi 72a]
gi|224512815|gb|EEF83182.1| transcription elongation factor GreA [Borrelia burgdorferi
CA-11.2a]
Length = 901
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 74/145 (51%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
GD ++ Y + ++
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896
>gi|15639013|ref|NP_218459.1| transcription elongation factor (greA) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189025253|ref|YP_001933025.1| transcription elongation factor GreA [Treponema pallidum subsp.
pallidum SS14]
gi|7387718|sp|O83063|GREA_TREPA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|238689311|sp|B2S1W7|GREA_TREPS RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|3322274|gb|AAC65015.1| transcription elongation factor (greA) [Treponema pallidum subsp.
pallidum str. Nichols]
gi|189017828|gb|ACD70446.1| transcription elongation factor GreA [Treponema pallidum subsp.
pallidum SS14]
Length = 162
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 81/150 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT+K + ++EL+ P + I A GDL ENAEY+AA+E Q + L
Sbjct: 9 VTAKMLNAKKKELQDLLDVRIPENSREIGRALELGDLRENAEYKAAREEQTRLNNMVTRL 68
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ I RA+V D +T+ R++FG +SL SG+ + Y I+G E+ + G++S SP+
Sbjct: 69 QEEIERAQVFDPTTVVAGRVSFGTVISLKNHTSGEDETYTILGPWESAPERGIISYMSPL 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
L+ ++ G+ ++ EK YEIL +
Sbjct: 129 GSNLLNRKTGEQLAFTVGEHEKVYEILSIS 158
>gi|239625679|ref|ZP_04668710.1| GreA/GreB family elongation factor [Clostridiales bacterium
1_7_47_FAA]
gi|239519909|gb|EEQ59775.1| GreA/GreB family elongation factor [Clostridiales bacterium
1_7_47FAA]
Length = 167
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY+AAK+ +N NE R+ L
Sbjct: 5 LTKSDIEKMQEEIEYRKLVVRKEALEAVKEARAHGDLSENFEYKAAKQDKNRNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A +I + + + G TV + + + + Y++V + GL+SI SP+
Sbjct: 65 EKMIKTARIISDESKD-NEVGLGDTVEIYIPDDDETERYKLVTTVRGNSLQGLISIDSPL 123
Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQV 155
+A+ ++GD + VN EI +
Sbjct: 124 GKAIRRHKVGDRVHVNVDDRFGYDVEIRSI 153
>gi|291520255|emb|CBK75476.1| Transcription elongation factor [Butyrivibrio fibrisolvens 16/4]
Length = 167
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T DKIQ E+ R+ RP++++ + E RA GDLSEN EY AK +N+N+ R+ L
Sbjct: 5 LTQGDIDKIQAEIDERKLVLRPKLLEEVKETRAQGDLSENFEYHEAKRAKNMNDSRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ AEV+D S+ + D + TV++ ++ Y++V + GL+SI SP+
Sbjct: 65 EKMLKFAEVVDDSS-AEDEVGINNTVTIYIPEDDCEETYKLVTSIRGNSLKGLISIESPL 123
Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQV 155
A+ GK +GD V EI ++
Sbjct: 124 GAAIRGKHVGDKALVKVNDDYSYEVEIRKI 153
>gi|226307748|ref|YP_002767708.1| transcription elongation factor GreA [Rhodococcus erythropolis PR4]
gi|259647649|sp|C1A2Y4|GREA_RHOE4 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|226186865|dbj|BAH34969.1| transcription elongation factor GreA [Rhodococcus erythropolis PR4]
Length = 164
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQESHDRLKNELDQLIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L+ ++ A+V + T SG + + + D + + I +E D + + S +
Sbjct: 67 LQELLNSAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDAKLEVYSPN 126
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ AL+ ++GD N P G
Sbjct: 127 SPLGGALLEAKVGDTREYNLPNG 149
>gi|134097505|ref|YP_001103166.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL
2338]
gi|291009354|ref|ZP_06567327.1| transcription elongation factor GreA [Saccharopolyspora erythraea
NRRL 2338]
gi|166200697|sp|A4F866|GREA_SACEN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|133910128|emb|CAM00241.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL
2338]
Length = 162
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 3/142 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T FD+++ EL RP I I+EAR GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQDAFDRLKSELDELVG-NRPVIAAKINEAREEGDLKENGGYHAAREEQGHLESRIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI-VGDQEADVQSGLVSISS 124
L+ ++ A+V D+ T +G G+ +++ + + + + + ++ A + S SS
Sbjct: 67 LQELLRTAKVGDVPTEAG-VAKPGSVLTVRYDDEDETEKFLLATREEGAHGDLEVYSPSS 125
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ +AL+ + G+ P G
Sbjct: 126 PLGQALLDAKEGETREYELPNG 147
>gi|219685364|ref|ZP_03540183.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia garinii Far04]
gi|219673137|gb|EED30157.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia garinii Far04]
Length = 900
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 73/145 (50%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
+ GD + Y + ++
Sbjct: 871 DSKEGDSLDFIINNTNFRYFVKKIE 895
>gi|219684768|ref|ZP_03539710.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia garinii PBr]
gi|219671713|gb|EED28768.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia garinii PBr]
Length = 900
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 73/145 (50%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
+ GD + Y + ++
Sbjct: 871 DSKEGDSLDFIINNTNFRYFVKKIE 895
>gi|256824590|ref|YP_003148550.1| transcription elongation factor [Kytococcus sedentarius DSM 20547]
gi|256687983|gb|ACV05785.1| transcription elongation factor [Kytococcus sedentarius DSM 20547]
Length = 164
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 4/156 (2%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ +T ++++ EL + E R I I +AR+ GDL EN Y AAKE Q EGR
Sbjct: 7 ETTYLTRAAYERLNAELEQLKGEGRREIAHRIEDARSEGDLKENGGYHAAKEEQGKMEGR 66
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVS 121
+A+L ++ AEV + + G V++ + G+ + + + AD + S
Sbjct: 67 IAQLTTLLQNAEVGEEPPADDGVVEPGMIVTI--EMFGETETFLFGNREIADGDDMEVYS 124
Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
SP+ +A+ G+ G+ I AP G+K +I++V
Sbjct: 125 ERSPLGKAIDGRNQGETIGYEAPNGKKIDVKIIEVR 160
>gi|51598396|ref|YP_072584.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
garinii PBi]
gi|51572967|gb|AAU06992.1| transcription elongation factor [Borrelia garinii PBi]
Length = 900
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 73/145 (50%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
+ GD + Y + ++
Sbjct: 871 DSKEGDSLDFIINNTNFRYFVKKIE 895
>gi|224532243|ref|ZP_03672875.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia valaisiana VS116]
gi|224511708|gb|EEF82114.1| transcription elongation factor GreA (Transcript cleavage
factorgreA) [Borrelia valaisiana VS116]
Length = 900
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 75/145 (51%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 751 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVIILNEATGKDESYLILGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
+ GD ++ Y + ++
Sbjct: 871 DSKEGDSLNFVINNTNFRYFVKKIE 895
>gi|226321957|ref|ZP_03797482.1| transcription elongation factor GreA [Borrelia burgdorferi Bol26]
gi|226232547|gb|EEH31301.1| transcription elongation factor GreA [Borrelia burgdorferi Bol26]
Length = 901
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 73/145 (50%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + + ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTDKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
GD ++ Y + ++
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896
>gi|297572051|ref|YP_003697825.1| GreA/GreB family elongation factor [Arcanobacterium haemolyticum
DSM 20595]
gi|296932398|gb|ADH93206.1| GreA/GreB family elongation factor [Arcanobacterium haemolyticum
DSM 20595]
Length = 159
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 5/158 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D ++ + FD++ EL + R I I EAR+ GDL EN Y AA+E Q+ E
Sbjct: 1 MADTTWLSQETFDRLSAELEHLKTTGRTDIATKIEEARSEGDLRENGGYHAAREEQSKME 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGL 119
GR+ EL ++ AEV D + + + +A G ++ + +G +K + + + A+ V +
Sbjct: 61 GRIQELTYLLEHAEVGD-APVELNEVAPGLVIT--AEVNGKEKKFLLGSREAAEFVDIDV 117
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
++P+ A++GK++GD S AP G++ ++L +
Sbjct: 118 YPETAPLGSAIMGKKVGDETSYTAPNGKEFAVKVLGIE 155
>gi|71894394|ref|YP_278502.1| transcription elongation factor GreA [Mycoplasma synoviae 53]
gi|71851182|gb|AAZ43791.1| transcription elongation factor GreA [Mycoplasma synoviae 53]
Length = 157
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 51/150 (34%), Positives = 87/150 (58%), Gaps = 5/150 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+KI ++ + DK ++E + +R I A+ EARA GDLSENAEY A++ Q + E R
Sbjct: 4 EKIFLSQETLDKYKKEYEKLVKVDRVEIQNALKEARAQGDLSENAEYDVARDKQAVVEAR 63
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE I+ +A++I + I+ G+ V+ ++ ++ + I+G +AD + +S
Sbjct: 64 ILELEGILDKAQLI--KHKDENTISIGSKVTFLDLSTNKEDEVTIMGIHDADPFNKKISN 121
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEI 152
SP+A A++ K+ GD + V G + YEI
Sbjct: 122 YSPLATAMMSKKEGDTVEVE---GLEKYEI 148
>gi|172040278|ref|YP_001799992.1| transcription elongation factor GreA [Corynebacterium urealyticum
DSM 7109]
gi|171851582|emb|CAQ04558.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
Length = 174
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 72/151 (47%), Gaps = 5/151 (3%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M D +T + +D++ EL + E RP + I+E R GDL EN Y AA+E Q
Sbjct: 1 MADNQTTWLTQESYDRLNAELFALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQ 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQ 116
E R+A LE ++ A + + SG + + + DK+ + I G + ++ +
Sbjct: 60 EEARIAYLEELLDNATIGEAPQESGVALVGTVVHVYYDDDEEDKETFLIGTRGLESSNPE 119
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE 147
S +P+ AL+G ++G+ P G+
Sbjct: 120 LETYSTDAPLGAALVGAKVGETREYETPTGD 150
>gi|300743808|ref|ZP_07072828.1| transcription elongation factor GreA [Rothia dentocariosa M567]
gi|311113051|ref|YP_003984273.1| transcription elongation factor GreA [Rothia dentocariosa ATCC
17931]
gi|300380169|gb|EFJ76732.1| transcription elongation factor GreA [Rothia dentocariosa M567]
gi|310944545|gb|ADP40839.1| transcription elongation factor GreA [Rothia dentocariosa ATCC
17931]
Length = 165
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 11/158 (6%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +D++ QEL + R I+ I+ AR GDL EN Y AA++ Q NE R+ +
Sbjct: 8 WLTQDAYDRLTQELEYLSGPYRQEIVDRIAAARDEGDLRENGGYHAARDEQGKNEARINQ 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ------EADVQSGL 119
L++++ A+V D + G +A G ++E + ++G + A+ +
Sbjct: 68 LKHLLENAQVGDAPSDDG-VVALGM---VIEAEVASRSMKFLLGSREIEETLPANSDLKV 123
Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
S SP+ A++G + GD ++ AP G E T +I+ V
Sbjct: 124 FSEKSPMGAAILGAKEGDEVTYLAPNGKELTAKIVSVK 161
>gi|256389881|ref|YP_003111445.1| transcription elongation factor GreA [Catenulispora acidiphila DSM
44928]
gi|256356107|gb|ACU69604.1| transcription elongation factor GreA [Catenulispora acidiphila DSM
44928]
Length = 164
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 1/142 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +D++ EL+ R I + I AR GDL EN Y AAKE Q E R+ +
Sbjct: 10 WLTQDAYDRLTAELQQLSGPGRVEIAQKIEAAREEGDLRENGGYHAAKEEQGKIELRIRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L ++ A+V D S SG + + + D + + ++A + S SP
Sbjct: 70 LTQLLEHAKVGD-SVESGVAVPGAVVTIAFDGDEDDTLTFLLGSREDAADNMEVYSAQSP 128
Query: 126 IARALIGKELGDIISVNAPGGE 147
+ A+ GK++G+ P G+
Sbjct: 129 LGGAINGKKIGEQAEYELPNGK 150
>gi|254492017|ref|ZP_05105195.1| transcription elongation factor GreB [Methylophaga thiooxidans
DMS010]
gi|224462832|gb|EEF79103.1| transcription elongation factor GreB [Methylophaga thiooxydans
DMS010]
Length = 147
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
++ QEL R R +++A++ A A GD SENAEY K+ + R+ L+ I
Sbjct: 3 RLNQELSERWA-RRREVVQALAAAAAEGDRSENAEYIYRKKELRELDRRIRYLQKRIPDL 61
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
V+ R+ F A V+L E +G++ Y+IVG E D G +S+ SP+ARAL+GK
Sbjct: 62 NVVHDVPDDTGRVFFAAWVTL-ETEAGEEVTYRIVGPDEIDHAKGNISVDSPLARALLGK 120
Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157
+ D + G K Y IL + +
Sbjct: 121 MIDDDAIIRVEDGRKQYYILAIDY 144
>gi|308176537|ref|YP_003915943.1| transcription elongation factor GreA [Arthrobacter arilaitensis
Re117]
gi|307744000|emb|CBT74972.1| transcription elongation factor GreA [Arthrobacter arilaitensis
Re117]
Length = 165
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T + +D++Q EL + R I+ I +AR+ GDL EN Y AA+E Q E R+
Sbjct: 10 VWLTQEAYDRLQDELTFLSGPGRAEIVARIEQARSEGDLKENGGYHAAREEQGKAEARIL 69
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSIS 123
L++++ RA+V D G I + + +GD+ + + A D + S
Sbjct: 70 YLKDLLRRADVGDAPADDG--IVEPGMLVVANI-AGDETTFLFGSREVAGDTDLEVYSEQ 126
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
SPI A+ G ++GD +S AP G + EI+
Sbjct: 127 SPIGVAVHGAKVGDKLSYLAPNGRDIKVEIIS 158
>gi|295395791|ref|ZP_06805979.1| transcription elongation factor GreA [Brevibacterium mcbrellneri
ATCC 49030]
gi|294971326|gb|EFG47213.1| transcription elongation factor GreA [Brevibacterium mcbrellneri
ATCC 49030]
Length = 163
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 8/155 (5%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
D+ +T + F+++ +EL R I + I AR GDL EN Y AA+E Q E
Sbjct: 7 ADQTWLTPQAFERLTKELEHLSGPGRTEIAERIESARDEGDLKENGGYHAAREEQGKLEA 66
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV- 120
R+ ELE+++ A V + + G V+L G +K ++G +E + V
Sbjct: 67 RIRELEHLLQNANVSEPD-GDESTVTPGKLVTLK---MGRRKIEFLLGSREIISEEDHVD 122
Query: 121 --SISSPIARALIGKELGDIISVNAPGGE-KTYEI 152
S SP+ A+ GK++GD + AP G I
Sbjct: 123 VFSEKSPLGAAVNGKKVGDKVEYEAPNGRMIEVTI 157
>gi|68536557|ref|YP_251262.1| transcription elongation factor GreA [Corynebacterium jeikeium
K411]
gi|68264156|emb|CAI37644.1| greA [Corynebacterium jeikeium K411]
Length = 173
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 4/152 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D++ EL + E RP + I+E R GDL EN Y AA+E Q E R+
Sbjct: 8 WLTQESYDRLNAELTALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQEEARITY 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQSGLVSIS 123
LE ++ A + + SG + + + DK+ + I G + ++ S
Sbjct: 67 LEELLDSATIGEAPQESGVALVGSVIHVYYDGDEDDKETFLIGTRGLESSNPDLETYSTD 126
Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
+P+ A++G ++G+ P G+ + I+
Sbjct: 127 APLGAAIVGAKVGETREYQTPAGDTVSVTIVS 158
>gi|171912645|ref|ZP_02928115.1| transcript cleavage factor/unknown domain fusion protein
[Verrucomicrobium spinosum DSM 4136]
Length = 627
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 1/145 (0%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
+K + EL + + P+ K I AR YGDL EN EY++A++ Q + + E + R
Sbjct: 470 EKRKIELEELVRVKIPQNKKDIQIAREYGDLRENFEYKSARQHQAVLLRMQSTYERELRR 529
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
A D +S + + G V L + +G + I+G + D ++S S +A+ALIG
Sbjct: 530 ARGTDFVGVSTETVGIGTIVDLQDVGTGKTETQTILGAWDGDPDQSILSYLSEMAKALIG 589
Query: 133 KELGDIISVNAPG-GEKTYEILQVL 156
K +GD + G + +I+ +
Sbjct: 590 KRVGDEAELPTDTHGTRKVKIVSIR 614
>gi|254518202|ref|ZP_05130258.1| GreA/GreB family elongation factor [Clostridium sp. 7_2_43FAA]
gi|226911951|gb|EEH97152.1| GreA/GreB family elongation factor [Clostridium sp. 7_2_43FAA]
Length = 154
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 81/150 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+++EL +R +R I K + A A+GD SENAEY+ A N+ R+ L
Sbjct: 5 LTEENIKKLREELEYRMTVKRAEIAKEKAIAAAHGDRSENAEYKEACANYRENDNRIQYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
N+I+ A +ID + + + + + +V ++D ++ +SI S +
Sbjct: 65 LNMISTATIIDDEEIDKSTLGINSKAKIKFIEDDFEDVVTLVTVMDSDPENMCISIESDL 124
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
AL GK++GDI+ V+AP + + EIL++L
Sbjct: 125 GLALKGKKVGDIVEVDAPEDKYSVEILEIL 154
>gi|229491945|ref|ZP_04385765.1| transcription elongation factor GreA [Rhodococcus erythropolis
SK121]
gi|229321158|gb|EEN86959.1| transcription elongation factor GreA [Rhodococcus erythropolis
SK121]
Length = 167
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ +
Sbjct: 11 WLTQESHDRLKNELDQLIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L+ ++ A+V + T SG + + + D + + I +E D + + S +
Sbjct: 70 LQELLNSAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDAKLEVYSPN 129
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ AL+ ++GD N P G
Sbjct: 130 SPLGGALLEAKVGDTREYNLPNG 152
>gi|291456474|ref|ZP_06595864.1| putative transcription elongation factor GreA [Bifidobacterium
breve DSM 20213]
gi|291381751|gb|EFE89269.1| putative transcription elongation factor GreA [Bifidobacterium
breve DSM 20213]
Length = 159
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 85/146 (58%), Gaps = 6/146 (4%)
Query: 3 DKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
DK+ + T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEG
Sbjct: 4 DKVYLLTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSKNEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLV 120
R+ EL + +++I+ + + G+ V++ + +G++ Y + A ++
Sbjct: 64 RITELTVKLRDSKIIENAPE--GTVGNGSVVTI--ELNGNEMTYVLGSRDIVAGTDYEIM 119
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
+ SPI RA+ G ++GD +S AP G
Sbjct: 120 TPDSPIGRAIEGAKVGDTVSYTAPNG 145
>gi|325971211|ref|YP_004247402.1| transcription elongation factor GreA [Spirochaeta sp. Buddy]
gi|324026449|gb|ADY13208.1| transcription elongation factor GreA [Spirochaeta sp. Buddy]
Length = 906
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 74/147 (50%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T+ + ++EL + Q E P + + I AR GDL EN+EY+ KE QNL + L
Sbjct: 754 TAASLEAKKKELEYIQHVELPEVAREIGTAREMGDLRENSEYKYGKEKQNLLNNTLRRLA 813
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I RA VI + +I FG V LV+ G + Y I+G E++ ++++S+P
Sbjct: 814 EEIDRATVISKDKVDTTKIGFGTKVVLVDHTKGSEVVYTIMGPWESNPDENIINLSAPFG 873
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQ 154
RAL+ E+G+ + + + +
Sbjct: 874 RALLNHEIGERFTFVLNDQPYDFTVKE 900
>gi|320532416|ref|ZP_08033252.1| putative transcription elongation factor GreA [Actinomyces sp. oral
taxon 171 str. F0337]
gi|320135363|gb|EFW27475.1| putative transcription elongation factor GreA [Actinomyces sp. oral
taxon 171 str. F0337]
Length = 161
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 1 MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M ++ +T + +D++ EL R+ ER I + + AR GDL ENA Y AA+E
Sbjct: 1 MSEQSQGTWLTQEAYDRLSTELEHRKTAERKEIAQRVEAARQEGDLRENAGYHAAREEAG 60
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQ 116
LNE R+ +LE + A++ + + T + G ++ + + G + DV
Sbjct: 61 LNEARIIQLEETLENAQIGEAADDGSVSAGTIVTAKVA----GKEQVFALGGQEITEDVP 116
Query: 117 SG--LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
G + S +P+ +AL+G GD +S AP G K EI++V
Sbjct: 117 DGVKVFSPDAPLGQALMGHRAGDTVSYEAPTGRKIKAEIVKVE 159
>gi|302530117|ref|ZP_07282459.1| transcription elongation factor greA [Streptomyces sp. AA4]
gi|302439012|gb|EFL10828.1| transcription elongation factor greA [Streptomyces sp. AA4]
Length = 163
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 1/142 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +D+++ EL E RP I I+++R GDL EN Y AA+E Q E R+
Sbjct: 8 WLTQDAYDRLKHELDEMI-ENRPVIAARINDSREEGDLKENGGYHAAREEQGQAEARIRH 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ A+V + G + + ++K ++ A+ + S SP
Sbjct: 67 LQELLRNAKVGEAPDDDGTAGPGKVLTVKYDGDDEEEKFLLATREEGAEGALDVYSPESP 126
Query: 126 IARALIGKELGDIISVNAPGGE 147
+ +AL+G + G+ P G+
Sbjct: 127 LGKALLGAKEGESREYELPNGK 148
>gi|239917044|ref|YP_002956602.1| transcription elongation factor GreA [Micrococcus luteus NCTC 2665]
gi|281414493|ref|ZP_06246235.1| transcription elongation factor GreA [Micrococcus luteus NCTC 2665]
gi|239838251|gb|ACS30048.1| transcription elongation factor GreA [Micrococcus luteus NCTC 2665]
Length = 164
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 6/154 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D++ +EL R II+ I AR GDL EN Y AA+E Q+ NEGR+AE
Sbjct: 10 WLTQEAYDRLSKELEHISGPGRQEIIERIEAARDEGDLKENGGYHAAREEQSKNEGRIAE 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L++++ A V + + G + G V+ V +GD+ + + A D + S
Sbjct: 70 LKHLLETARVGEAAENDG-AVHPGTVVTAV--VAGDEMTFLFGNREIAADDESLEVYSER 126
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
SP+ A+ G + GD +S AP G + EI V
Sbjct: 127 SPLGEAINGAKQGDKVSYTAPNGKDIKVEIKDVQ 160
>gi|269794151|ref|YP_003313606.1| transcription elongation factor [Sanguibacter keddieii DSM 10542]
gi|269096336|gb|ACZ20772.1| transcription elongation factor [Sanguibacter keddieii DSM 10542]
Length = 160
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D +T + D++Q EL E R I I+ AR GDL EN Y AA+E Q NE R
Sbjct: 5 DVTWLTQEAHDRLQAELAHLTGEGRTDITDRIAAARDEGDLKENGGYHAAREEQAKNEAR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGLVS 121
+ EL + + + G V+ + +GD+ + + + AD + S
Sbjct: 65 IRELTEKLRSVRIGTPP--DDGVVEQGMVVT--AEVAGDEMVFLLGSREIADTTDIDVYS 120
Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147
SP+ A++GK++G+ + AP G+
Sbjct: 121 EKSPLGAAILGKKIGETAAYTAPNGK 146
>gi|225551922|ref|ZP_03772862.1| transcription elongation factor GreA [Borrelia sp. SV1]
gi|225370920|gb|EEH00350.1| transcription elongation factor GreA [Borrelia sp. SV1]
Length = 901
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 74/145 (51%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL++ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 752 LNKKQKELKYLKEVEIPGNSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEATGKDESYLILGPWESNPDEGIISYKSPFGENLL 871
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
GD ++ Y + ++
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896
>gi|111114955|ref|YP_709573.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
afzelii PKo]
gi|216263923|ref|ZP_03435917.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia afzelii ACA-1]
gi|110890229|gb|ABH01397.1| transcription elongation factor [Borrelia afzelii PKo]
gi|215979967|gb|EEC20789.1| transcription elongation factor GreA (Transcript cleavage factor
greA) [Borrelia afzelii ACA-1]
Length = 900
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/145 (31%), Positives = 73/145 (50%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+K Q+EL+ ++ E P K I +AR GDL ENAEY +AKE Q R+ L I
Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
A+VID + + FG V ++ + +G ++Y I+G E++ G++S SP L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVIILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
GD ++ Y + ++
Sbjct: 871 DSREGDSLNFIINNTNFKYFVKKIE 895
>gi|115378949|ref|ZP_01466082.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1]
gi|310818253|ref|YP_003950611.1| transcription elongation factor, GreA/GreB family [Stigmatella
aurantiaca DW4/3-1]
gi|115364025|gb|EAU63127.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1]
gi|309391325|gb|ADO68784.1| Transcription elongation factor, GreA/GreB family [Stigmatella
aurantiaca DW4/3-1]
Length = 169
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 16/155 (10%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
DK +T +G+ +Q+EL E E E A + + E R
Sbjct: 26 DKRYITPEGYRALQEELARLLGPEAGE---------------EGQEAWGAADRKRERERR 70
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
L + V+ R+ FGA V+L ++ G + Y+IVG EADV++G +S+
Sbjct: 71 AHFLSETLEEVRVVAPEPSQEGRVFFGAWVTLEDEE-GAEVTYRIVGPDEADVKAGRLSV 129
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+GKE+G+ + V P G Y + +V +
Sbjct: 130 ESPLARALLGKEVGEAVPVERPRGAVEYTLTRVAY 164
>gi|332298363|ref|YP_004440285.1| transcription elongation factor GreA [Treponema brennaborense DSM
12168]
gi|332181466|gb|AEE17154.1| transcription elongation factor GreA [Treponema brennaborense DSM
12168]
Length = 899
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 81/150 (54%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT+K F++ +Q+L + P K I EA A GDL ENAEY+AAKE Q L +L
Sbjct: 746 VTAKMFEQKKQQLEHITSVDIPANSKEIGEALAQGDLRENAEYKAAKERQTLLASTATKL 805
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ I RA + D +T + R++FG V+L SG+ + Y I+G E+D + ++S SP
Sbjct: 806 QDEINRARIFDPTTGTTARVSFGTVVTLKNDVSGESEEYTILGPWESDPDNKVISYMSPF 865
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
A++ + +S + Y + ++
Sbjct: 866 GNAILNAKEKQALSFVINEHDYKYTVEKIE 895
>gi|325955918|ref|YP_004286528.1| transcription elongation factor GreA [Lactobacillus acidophilus
30SC]
gi|325332483|gb|ADZ06391.1| transcription elongation factor GreA [Lactobacillus acidophilus
30SC]
gi|327182753|gb|AEA31200.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
1118]
Length = 143
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 80/156 (51%), Gaps = 13/156 (8%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ ++ RPR IK + ARA GDLSEN EY AK
Sbjct: 1 MVYFQKMTPEGYKQIEDEIARLKK-GRPRRIKILQAARALGDLSENTEYTEAKRYLG--- 56
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ E+++ T ++ G TV L + D + Y+IVG EAD+ G +
Sbjct: 57 -------KQLKYTEIVE--TKDDGKVDLGKTVVLKFDDDEDTEEYKIVGRMEADLADGKI 107
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +A++ KE G +V AP GE I++V
Sbjct: 108 SFGSPLGQAIMKKEAGTTSTVGAPAGEYKVTIVEVK 143
>gi|23465584|ref|NP_696187.1| transcription elongation factor GreA [Bifidobacterium longum
NCC2705]
gi|189439631|ref|YP_001954712.1| transcription elongation factor [Bifidobacterium longum DJO10A]
gi|213692643|ref|YP_002323229.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|296453851|ref|YP_003660994.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp.
longum JDM301]
gi|312133029|ref|YP_004000368.1| grea [Bifidobacterium longum subsp. longum BBMN68]
gi|317481865|ref|ZP_07940892.1| prokaryotic transcription elongation factor [Bifidobacterium sp.
12_1_47BFAA]
gi|322688807|ref|YP_004208541.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
infantis 157F]
gi|322690797|ref|YP_004220367.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
longum JCM 1217]
gi|23326251|gb|AAN24823.1| transcription elongation factor GreA [Bifidobacterium longum
NCC2705]
gi|189428066|gb|ACD98214.1| Transcription elongation factor [Bifidobacterium longum DJO10A]
gi|213524104|gb|ACJ52851.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|291517127|emb|CBK70743.1| Transcription elongation factor [Bifidobacterium longum subsp.
longum F8]
gi|296183282|gb|ADH00164.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp.
longum JDM301]
gi|311774017|gb|ADQ03505.1| GreA [Bifidobacterium longum subsp. longum BBMN68]
gi|316916656|gb|EFV38051.1| prokaryotic transcription elongation factor [Bifidobacterium sp.
12_1_47BFAA]
gi|320455653|dbj|BAJ66275.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320458793|dbj|BAJ69414.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
infantis ATCC 15697]
gi|320460143|dbj|BAJ70763.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
infantis 157F]
Length = 159
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
Query: 3 DKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
DK+ + T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEG
Sbjct: 4 DKVYLLTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSKNEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLV 120
R+ EL + +++I+ + + G+ V++ + +G++ Y + A ++
Sbjct: 64 RITELTVKLRDSKIIENAPE--GTVGEGSVVTI--ELNGNEMTYVLGSRDIVAGTDYDIM 119
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
+ SPI +A+ G ++GD++S AP G
Sbjct: 120 TPDSPIGKAIEGAKVGDVVSYTAPNG 145
>gi|255327346|ref|ZP_05368420.1| transcription elongation factor GreA [Rothia mucilaginosa ATCC
25296]
gi|255295626|gb|EET74969.1| transcription elongation factor GreA [Rothia mucilaginosa ATCC
25296]
Length = 165
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 1 MVDKI--PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + +T FD++ QEL R I+ I++AR GDL EN Y AA++ Q
Sbjct: 1 MAENTGAWLTQDAFDRLTQELEHLSGPYRQEIVDRIAQARDEGDLRENGGYHAARDEQAK 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD---- 114
NE R+ +L++++ A++ + + + ++ G + + + +G + + + D
Sbjct: 61 NEARIKQLKHLLETAQIGE-APVDDGVVSHG--MVIEAEVAGRTLKFLLGSREIEDTLPA 117
Query: 115 -VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVL 156
+ S SP+ A++G + GD ++ AP G +I+ V
Sbjct: 118 GTDLKVFSEKSPLGAAIMGAKQGDEVTYQAPNGNDLVAKIISVT 161
>gi|261337288|ref|ZP_05965172.1| transcription elongation factor GreA [Bifidobacterium gallicum DSM
20093]
gi|270277656|gb|EFA23510.1| transcription elongation factor GreA [Bifidobacterium gallicum DSM
20093]
Length = 161
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 11/159 (6%)
Query: 1 MVDKI-----PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKEL 55
M D++ +T DK+Q+EL WRQ E R I + I+ ARA GDLSEN YQAA+E
Sbjct: 1 MADEVEEKVVLLTQDAVDKLQEELTWRQGEYRDEITERIAAARAEGDLSENGGYQAAREE 60
Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-D 114
Q NEGR+ EL + A++I+ + G+ V++ G++ Y I A
Sbjct: 61 QGKNEGRINELIVKLRNAKIIEAPE--AGVVGNGSVVTI--DLGGNEMTYVIGSRDIAVA 116
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
++S SP+ A++G ++GD +S P G + +++
Sbjct: 117 TDIDVISPDSPVGAAIMGAKVGDTVSYTLPNG-REMKVV 154
>gi|289705947|ref|ZP_06502321.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Micrococcus luteus SK58]
gi|289557284|gb|EFD50601.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Micrococcus luteus SK58]
Length = 164
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 6/154 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D++ +EL R II+ I AR GDL EN Y AA+E Q+ NEGR+AE
Sbjct: 10 WLTQEAYDRLSKELEHISGPGRQEIIERIEAARDEGDLKENGGYHAAREEQSKNEGRIAE 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L++++ A V + + G + G V+ V +GD+ + + A D + S
Sbjct: 70 LKHLLETARVGEAAENDG-AVHPGTVVTAV--VAGDEMTFLFGNREIAADDESLEVYSER 126
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
SP+ A+ G + GD +S AP G + E+ V
Sbjct: 127 SPLGEAINGAKKGDKVSYTAPNGKDIKVEVKDVQ 160
>gi|325663588|ref|ZP_08151995.1| hypothetical protein HMPREF0490_02736 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470274|gb|EGC73506.1| hypothetical protein HMPREF0490_02736 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 167
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/148 (31%), Positives = 83/148 (56%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K+++E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTKNDIKKMREEIEYRKIVLRKELLEDVKEARAHGDLSENFEYHAAKKEKNKNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A+++ D + TV L + + + +++V + GL+S SPI
Sbjct: 65 ERMIKTAKIV-SDESKEDEVGLNNTVHLYFEEDDEVEVFKLVTTVRGNSLKGLISTESPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+A++GK+ GD + + G Y +++
Sbjct: 124 GKAILGKKAGDRVFIRVSGDAGYYVVVK 151
>gi|224282816|ref|ZP_03646138.1| transcription elongation factor GreA [Bifidobacterium bifidum NCIMB
41171]
gi|310287270|ref|YP_003938528.1| transcription elongation factor greA [Bifidobacterium bifidum S17]
gi|311064119|ref|YP_003970844.1| transcription elongation factor [Bifidobacterium bifidum PRL2010]
gi|313139975|ref|ZP_07802168.1| transcription elongation factor GreA [Bifidobacterium bifidum NCIMB
41171]
gi|309251206|gb|ADO52954.1| Transcription elongation factor greA [Bifidobacterium bifidum S17]
gi|310866438|gb|ADP35807.1| GreA Transcription elongation factor [Bifidobacterium bifidum
PRL2010]
gi|313132485|gb|EFR50102.1| transcription elongation factor GreA [Bifidobacterium bifidum NCIMB
41171]
Length = 159
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 5/151 (3%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T + FD ++ EL RQ + R I K I+ ARA GDLSEN YQAA+E Q NEGR+
Sbjct: 7 VLLTQEAFDTLKDELAHRQGQYREEITKRIAAARAEGDLSENGGYQAAREEQAKNEGRIN 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGLVSIS 123
EL + A +++ ++ G+ V+L + +G + Y + + + ++S
Sbjct: 67 ELTVKLRNATIVEAPK--AGKVGNGSLVTL--ELAGREMTYALGSRDIKVATKYDVISPE 122
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
SPI A++G GD +S AP G + +++
Sbjct: 123 SPIGAAILGANEGDTVSYKAPNGREISVVIK 153
>gi|257069437|ref|YP_003155692.1| transcription elongation factor GreA [Brachybacterium faecium DSM
4810]
gi|256560255|gb|ACU86102.1| transcription elongation factor GreA [Brachybacterium faecium DSM
4810]
Length = 163
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +D++ +EL + R I + I+ AR GDL EN Y AA+E Q E R+A+
Sbjct: 9 WLTQDAYDRLAKELEELEGPGRTEIAERIAAARDEGDLKENGGYHAAREEQGKMEARIAD 68
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123
L+ ++ A V + G + G V + +G ++ + + + AD L S
Sbjct: 69 LQRLLKNAVVGEAPKDDG-VVEPGMVVVI--SMAGKERTFLLGNREIADGDEDLEVYSSE 125
Query: 124 SPIARALIGKELGDIISVNAPGGE 147
SP+ A+ G +GD + AP G+
Sbjct: 126 SPLGSAIHGSRVGDTVDYTAPNGK 149
>gi|253579767|ref|ZP_04857035.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848766|gb|EES76728.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 166
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 76/140 (54%), Gaps = 1/140 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T K +KIQQE+ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+
Sbjct: 2 KEKLTQKDVEKIQQEIDHRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LEN++ A ++ + D + V + + + + Y++V + +SI
Sbjct: 62 RYLENMLKTATIVSDDSKD-DEVGMDDIVEVYFEEDDEIEKYKLVTSIRGNSMENRISIE 120
Query: 124 SPIARALIGKELGDIISVNA 143
SPI AL G ++GD + V
Sbjct: 121 SPIGMALKGHKVGDRVEVKV 140
>gi|262201591|ref|YP_003272799.1| transcription elongation factor GreA [Gordonia bronchialis DSM
43247]
gi|262084938|gb|ACY20906.1| transcription elongation factor GreA [Gordonia bronchialis DSM
43247]
Length = 164
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQESHDRLKGELDSLIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L+ ++ A+V + T SG + + + D + + I +E S S
Sbjct: 67 LQELLNNAKVGEAPTQSGVALPGSVVTVYYDGDEKDTETFLIATREEGAQGGDLETYSPS 126
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ ALI ++G+ + P G
Sbjct: 127 SPLGSALIDAKVGETREYSVPSG 149
>gi|111022813|ref|YP_705785.1| transcription elongation factor GreA [Rhodococcus jostii RHA1]
gi|226365321|ref|YP_002783104.1| transcription elongation factor GreA [Rhodococcus opacus B4]
gi|110822343|gb|ABG97627.1| transcription elongation factor [Rhodococcus jostii RHA1]
gi|226243811|dbj|BAH54159.1| transcription elongation factor GreA [Rhodococcus opacus B4]
Length = 164
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQESHDRLKSELDQLIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L+ ++ A+V + T SG + + + D + + I +E D + + S +
Sbjct: 67 LQELLNSAKVGEAPTQSGVALPGSVVKVYYDGDEKDTETFLIATREEGARDNKLEVYSPN 126
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ AL+ ++G+ P G
Sbjct: 127 SPLGGALLEAKVGETREYTLPNG 149
>gi|152965067|ref|YP_001360851.1| transcription elongation factor GreA [Kineococcus radiotolerans
SRS30216]
gi|151359584|gb|ABS02587.1| transcription elongation factor GreA [Kineococcus radiotolerans
SRS30216]
Length = 165
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 3/142 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +D+++ E E R + K I +AR GDL ENA Y AAKE Q E R+ +
Sbjct: 11 WLTQDAYDRLKAEYDRLSGEGRSELAKRIEQAREEGDLKENAGYHAAKEEQGKQELRIRQ 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLVSISS 124
L +++ A+V + + GA V++ + +G++ + + + D + S S
Sbjct: 71 LRHLLETAQVGEAPKSVAGEVTLGAVVTV--ELAGEEMRFLLGSREMGDGAGLDVYSEKS 128
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ A++G++ G+ ++ AP G
Sbjct: 129 PLGAAVLGRQPGEDVTYTAPSG 150
>gi|239621777|ref|ZP_04664808.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|239514968|gb|EEQ54835.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
infantis CCUG 52486]
Length = 159
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
Query: 3 DKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
DK+ + T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEG
Sbjct: 4 DKVYLLTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAARETQSKNEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLV 120
R+ EL + +++I+ + + G+ V++ + +G++ Y + A ++
Sbjct: 64 RITELTVKLRDSKIIENAPE--GTVGEGSVVTI--ELNGNEMTYVLGSRDIVAGTDYDIM 119
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
+ SPI +A+ G ++GD++S AP G
Sbjct: 120 TPDSPIGKAIEGAKVGDVVSYTAPNG 145
>gi|329948133|ref|ZP_08295005.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
170 str. F0386]
gi|328522866|gb|EGF49971.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
170 str. F0386]
Length = 161
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 11/163 (6%)
Query: 1 MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M ++ +T + +D++ EL R+ ER I + + AR GDL ENA Y AA+E
Sbjct: 1 MSEQSQGTWLTQEAYDRLSAELEHRKTTERKEIAQRVEAARQEGDLRENAGYHAAREEAG 60
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQ 116
LNE R+ +LE + A++ + + T + G ++ + + G + DV
Sbjct: 61 LNEARIIQLEETLENAQIGEAADDGSISAGTIVTAKVA----GKEQVFALGGQEITEDVP 116
Query: 117 SG--LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
G + S +P+ +AL+G GD ++ AP G E +I++V
Sbjct: 117 DGVKVFSPDAPLGQALMGHRAGDTVAYEAPTGREIQAQIVKVE 159
>gi|320094368|ref|ZP_08026155.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
178 str. F0338]
gi|319978701|gb|EFW10257.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
178 str. F0338]
Length = 159
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 80/157 (50%), Gaps = 7/157 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D +T +D + EL+ R + +RP I + I AR GDL EN Y AA+ Q++NE
Sbjct: 1 MADTQWLTQAQYDLLANELKERIEVKRPEIARLIDAARQEGDLRENGGYHAARNEQSMNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118
R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+
Sbjct: 61 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQTF-LLGSRDAGGDLGIQ 116
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
+ S +P+ A+IG + GD I AP G EIL
Sbjct: 117 VFSTQAPLGAAVIGHKAGDTIEFEAPTGRMIQVEILS 153
>gi|54026800|ref|YP_121042.1| transcription elongation factor GreA [Nocardia farcinica IFM 10152]
gi|54018308|dbj|BAD59678.1| putative transcription elongation factor [Nocardia farcinica IFM
10152]
Length = 164
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I+E R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQESHDRLKSELDALIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123
L+ ++ A+V T SG + + + D + + I +E S L S +
Sbjct: 67 LQELLNNAKVGVAPTKSGVALPGSVVKVYYDGDENDTETFLIATREEGLGHSDLETYSPN 126
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ ALI ++G+ P G
Sbjct: 127 SPLGGALIDAKVGETREYTLPNG 149
>gi|317508388|ref|ZP_07966060.1| transcription elongation factor GreA [Segniliparus rugosus ATCC
BAA-974]
gi|316253312|gb|EFV12710.1| transcription elongation factor GreA [Segniliparus rugosus ATCC
BAA-974]
Length = 163
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 4/149 (2%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M + + +T + D+++ EL RP + I+E R GDL EN Y AA+E Q
Sbjct: 1 MTENVTWLTQEAHDRLKVELDTLIA-NRPALAAEINERREEGDLKENGGYHAAREEQGQQ 59
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQS 117
E R+ +L++++ A+V T SG + + + D + + I +E +
Sbjct: 60 EARIRQLQDLLATAKVGAAPTQSGVALPGSVVTVYYDGDKNDTETFLIATREEGAQSGKL 119
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146
+ S +SP+ AL+ ++G+ P G
Sbjct: 120 EVYSPNSPLGGALLDAKVGETREYTVPNG 148
>gi|227546182|ref|ZP_03976231.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
infantis ATCC 55813]
gi|227213163|gb|EEI81035.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
infantis ATCC 55813]
Length = 159
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
Query: 3 DKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
DK+ + T + ++K+++EL R+ E R I I+ ARA GDLSEN YQAA+E Q+ NEG
Sbjct: 4 DKVYLLTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSKNEG 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLV 120
R+ EL + +++I+ + + G+ V++ + +G++ Y + A ++
Sbjct: 64 RIIELTVKLRDSKIIENAPE--GTVGEGSVVTI--ELNGNEMTYVLGSRDIVAGTDYDIM 119
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
+ SPI +A+ G ++GD++S AP G
Sbjct: 120 TPDSPIGKAIEGAKVGDVVSYTAPNG 145
>gi|260577699|ref|ZP_05845634.1| transcription elongation factor GreA [Corynebacterium jeikeium ATCC
43734]
gi|258604094|gb|EEW17336.1| transcription elongation factor GreA [Corynebacterium jeikeium ATCC
43734]
Length = 173
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 4/152 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + +D++ EL + E RP + I+E R GDL EN Y AA+E Q E R+
Sbjct: 8 WLTQESYDRLNTELTALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQEEARITY 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQSGLVSIS 123
LE ++ A + + SG + + + DK+ + I G + ++ S
Sbjct: 67 LEELLDSATIGEAPQESGVALVGSVIHVYYDGDEDDKETFLIGTRGLESSNPDLETYSTD 126
Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
+P+ A++G ++G+ P G+ + I+
Sbjct: 127 APLGAAIVGAKVGETREYQTPAGDTVSVTIVS 158
>gi|296394382|ref|YP_003659266.1| GreA/GreB family elongation factor [Segniliparus rotundus DSM
44985]
gi|296181529|gb|ADG98435.1| GreA/GreB family elongation factor [Segniliparus rotundus DSM
44985]
Length = 163
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 70/149 (46%), Gaps = 4/149 (2%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M + + +T + D+++ EL RP + I+E R GDL EN Y AA+E Q
Sbjct: 1 MTENVTWLTQEAHDRLKAELDSLIA-NRPVLAAEINERREEGDLKENGGYHAAREEQGQQ 59
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQS 117
E R+ +L++++ A+V T SG + + + D + + I +E +
Sbjct: 60 EARIRQLQDLLATAKVGAAPTQSGVALPGSVVTVYYDGDKSDTETFLIATREEGAQGGKL 119
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG 146
+ S +SP+ AL+ ++G+ P G
Sbjct: 120 EVYSPNSPLGGALLDAKVGETREYTVPNG 148
>gi|118594719|ref|ZP_01552066.1| transcription elongation factor GreB [Methylophilales bacterium
HTCC2181]
gi|118440497|gb|EAV47124.1| transcription elongation factor GreB [Methylophilales bacterium
HTCC2181]
Length = 144
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 79/144 (54%), Gaps = 1/144 (0%)
Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
+Q+EL + +RP +K IS A GD SEN +Y K+ + R+ L I A+
Sbjct: 1 MQRELSSLIKLDRPETVKVISWAAGNGDRSENGDYIYGKKKLRQIDSRIKFLLTAIEDAD 60
Query: 75 VIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
++ ST + ++ FGA V L+++ S + +IVG E + G +S SP+A+ALIG+
Sbjct: 61 IVHPSTSIDKKKVYFGANVKLLDEQSKSTLDIRIVGAHEINHNIGNISWLSPLAKALIGR 120
Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157
D+I V P KTY IL+V +
Sbjct: 121 TSSDLIEVQTPMNIKTYIILKVDY 144
>gi|326789147|ref|YP_004306968.1| transcription elongation factor GreA [Clostridium lentocellum DSM
5427]
gi|326539911|gb|ADZ81770.1| transcription elongation factor GreA [Clostridium lentocellum DSM
5427]
Length = 155
Score = 114 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 86/151 (56%), Gaps = 1/151 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D +++E+ +R+ R + + + EARA+GDLSEN EY+AAK + NEGR+
Sbjct: 4 YLTQQDIDNMKKEIEYRKVVVRKQRNEEVKEARAHGDLSENYEYKAAKRERGRNEGRIKY 63
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE +I A +I +T +G+ + G V + Y+IV E D + +SI SP
Sbjct: 64 LERMIKTATIITDNTEAGE-VGLGKLVDVYFIEDDMNIEYEIVTTMETDAINNKISIESP 122
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ + + K +GDI+++++P GE + I +
Sbjct: 123 LGKMIYKKRVGDIVNIDSPDGEYSVRIQSIR 153
>gi|283458641|ref|YP_003363276.1| transcription elongation factor [Rothia mucilaginosa DY-18]
gi|283134691|dbj|BAI65456.1| transcription elongation factor [Rothia mucilaginosa DY-18]
Length = 189
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 10/155 (6%)
Query: 1 MVDKI--PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + +T FD++ QEL + R I+ I++AR GDL EN Y AA++ Q
Sbjct: 25 MAENTGAWLTQDAFDRLTQELEYLSGPYRQEIVDRIAQARDEGDLRENGGYHAARDEQAK 84
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD---- 114
NE R+ +L++++ A + D + + G + + + +G + + + D
Sbjct: 85 NEARIKQLKHLLETAHIGD-TPADDGVVEHG--MVIEAEVAGRTLKFLLGSREIEDTLPA 141
Query: 115 -VQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148
+ S SP+ A++G + GD ++ AP G++
Sbjct: 142 GSDLKVFSEKSPLGAAIMGAKQGDEVTYTAPNGKE 176
>gi|315037460|ref|YP_004031028.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
1112]
gi|312275593|gb|ADQ58233.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
1112]
Length = 143
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 79/156 (50%), Gaps = 13/156 (8%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ ++ RPR IK + A A GDLSEN EY AK
Sbjct: 1 MVYFQKMTPEGYKQIEDEIARLKK-GRPRRIKILQAACALGDLSENTEYTEAKRYLG--- 56
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ E+++ T ++ G TV L + D + Y+IVG EAD+ G +
Sbjct: 57 -------KQLKYTEIVE--TKDDGKVDLGKTVVLKFDDDEDTEEYKIVGRMEADLADGKI 107
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ +A++ KE G +V AP GE I++V
Sbjct: 108 SFGSPLGQAIMKKEAGTTSTVGAPAGEYKVTIVEVK 143
>gi|91775490|ref|YP_545246.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
gi|91709477|gb|ABE49405.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
Length = 165
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT GF +QQ+ +QE +P ++ + A ++ + + +
Sbjct: 29 YVTPHGFKLLQQQASALEQERQPLTMRK--------------DDPAVQQRLAMIDRDLRY 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + A V+D +T D + FGATV + + +G+ + IVG+ EAD+ + VS SP
Sbjct: 75 LQARLESAIVVDPATQPTDTVLFGATVEVED-ENGNSHTFMIVGEDEADIATNRVSWVSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ALIG+++GD ++ + P G EI+ + +
Sbjct: 134 LAKALIGQKIGDSVTWHRPAGNLELEIIAIHY 165
>gi|331083573|ref|ZP_08332684.1| hypothetical protein HMPREF0992_01608 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330403784|gb|EGG83336.1| hypothetical protein HMPREF0992_01608 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 167
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KIQ E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTENDVKKIQAEIEYRKLTVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNKNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ AE++ + D + + ++ + + Y++V + +SI SP+
Sbjct: 65 ERMLKTAEIVSEDS-KADEAGMNNVIEVYFEDDDETETYKLVTSIRGNSLDNKISIESPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+A++G GD + V Y +++
Sbjct: 124 GKAILGHREGDRVWVKINESAGYYIVIK 151
>gi|260587256|ref|ZP_05853169.1| transcription elongation factor GreA [Blautia hansenii DSM 20583]
gi|260542451|gb|EEX23020.1| transcription elongation factor GreA [Blautia hansenii DSM 20583]
Length = 169
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 77/148 (52%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T KIQ E+ +R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ L
Sbjct: 7 LTENDVKKIQAEIEYRKLTVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNKNESRIRYL 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E ++ AE++ + D + + ++ + + Y++V + +SI SP+
Sbjct: 67 ERMLKTAEIVSEDS-KADEAGMNNVIEVYFEDDDETETYKLVTSIRGNSLDNKISIESPL 125
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+A++G GD + V Y +++
Sbjct: 126 GKAILGHREGDRVWVKINESAGYYIVIK 153
>gi|183601464|ref|ZP_02962834.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis HN019]
gi|219683518|ref|YP_002469901.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis AD011]
gi|241191036|ref|YP_002968430.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241196442|ref|YP_002969997.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|183219070|gb|EDT89711.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis HN019]
gi|219621168|gb|ACL29325.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis AD011]
gi|240249428|gb|ACS46368.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240250996|gb|ACS47935.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|295794025|gb|ADG33560.1| transcription elongation factor GreA [Bifidobacterium animalis
subsp. lactis V9]
Length = 160
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 52/152 (34%), Positives = 86/152 (56%), Gaps = 6/152 (3%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T + +DK+++EL R+ E R I + I+ ARA GDLSEN YQAA+E Q+ NEGR+
Sbjct: 8 VLLTQEAYDKMKEELAHREGEYRDEITERIAAARAEGDLSENGGYQAAREEQSKNEGRIN 67
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSIS 123
EL + A++I+ + G+ V++ + G++ Y I ++S
Sbjct: 68 ELIVKLRNAKIIEAPK--AGEVGNGSLVTI--ELGGNEMQYVIGSRDITVATDYDVISPE 123
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
SPI A+IG ++GD+++ AP G E + I +
Sbjct: 124 SPIGGAIIGHKVGDVVTYKAPNGREISVTIKE 155
>gi|295110686|emb|CBL24639.1| Transcription elongation factor [Ruminococcus obeum A2-162]
Length = 166
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 54/150 (36%), Positives = 82/150 (54%), Gaps = 3/150 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +K +T + +KI++E+ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE
Sbjct: 1 MGEK--LTKRDVEKIEEEIEHRKLVIRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNE 58
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE ++ A V+D S+ S D + V + + G+ + Y++V + V
Sbjct: 59 SRIRYLERMLKTATVVDDSSKS-DEVGMDDIVEVEFEEDGEVEKYKLVTSIRGNSMENRV 117
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTY 150
SI SPI +AL G +GD + V Y
Sbjct: 118 SIESPIGKALKGHRVGDRVLVKVNENVSYY 147
>gi|15828286|ref|NP_302549.1| transcription elongation factor GreA [Mycobacterium leprae TN]
gi|221230763|ref|YP_002504179.1| transcription elongation factor GreA [Mycobacterium leprae Br4923]
gi|6226624|sp|P46808|GREA_MYCLE RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|254799564|sp|B8ZT53|GREA_MYCLB RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|13093979|emb|CAC31909.1| transcription elongation factor G [Mycobacterium leprae]
gi|219933870|emb|CAR72491.1| transcription elongation factor G [Mycobacterium leprae Br4923]
Length = 164
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQESHDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L++++ A+V + SG + + D + + I QE + + + S +
Sbjct: 67 LQDLLNIAKVGEAPKQSGVALPGSVVKVYYNDDKSDTETFLIATRQEGVNEGKLEVYSPN 126
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ ALI ++G+ S P G
Sbjct: 127 SPLGGALIDAKVGETRSYTVPNG 149
>gi|300789906|ref|YP_003770197.1| transcription elongation factor GreA [Amycolatopsis mediterranei
U32]
gi|299799420|gb|ADJ49795.1| transcription elongation factor GreA [Amycolatopsis mediterranei
U32]
Length = 167
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 1/144 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +D+++ EL E RP I I+++R GDL EN Y AA+E Q E R+
Sbjct: 11 WLTQDAYDRLKHELDEMI-ENRPVIAARINDSREEGDLKENGGYHAAREEQGQAEARIRH 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ A+V + G E + D+K ++ A+ + + S SP
Sbjct: 70 LQELLRSAKVGEKPANDGTAGPGKVLTVRYEGDDEDEKFLLATREEGAEGELDVYSPESP 129
Query: 126 IARALIGKELGDIISVNAPGGEKT 149
+ +AL+G + G+ P G+
Sbjct: 130 LGKALLGAKEGESREYELPNGKVQ 153
>gi|331091714|ref|ZP_08340548.1| hypothetical protein HMPREF9477_01191 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330403471|gb|EGG83030.1| hypothetical protein HMPREF9477_01191 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 167
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 41/148 (27%), Positives = 81/148 (54%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + K+++E+ +R+ R ++A+ EARA+GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTEEDIKKMEEEIEYRRLVVRKEALEAVKEARAHGDLSENFEYHAAKKDKNKNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ +I A+++ + D + V + ++ + + +++V + +S SPI
Sbjct: 65 QRMIRTAQIVSDDS-KEDEVGINKAVEVYFEDDDECETFKLVTTVRGNSIDNRISTESPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+A++G + GD + V Y +++
Sbjct: 124 GKAILGHKAGDRVFVKVNENAGYYVVIK 151
>gi|330465846|ref|YP_004403589.1| transcription elongation factor grea [Verrucosispora maris
AB-18-032]
gi|328808817|gb|AEB42989.1| transcription elongation factor grea [Verrucosispora maris
AB-18-032]
Length = 165
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +D+++ EL RP I I+ R GDL EN Y AA+E Q EGR+
Sbjct: 11 WLSQDAYDRLKAELDELIA-NRPIIAAEINARREEGDLRENGGYHAAREEQGKAEGRILY 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123
L+ ++ A+V + T D +A G V++ + D ++G +E + L S
Sbjct: 70 LKELLRTAQVGEAPT--ADAVAPGMVVTIYFDDDADDTETFLLGSREIASTTDLTVYSPE 127
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
S + +A++G + G + AP G + ++
Sbjct: 128 SALGKAILGGKAGQTCTYTAPSGADIKVTVVS 159
>gi|330836574|ref|YP_004411215.1| Transcription elongation factor, GreA/GreB, N-terminal protein
[Spirochaeta coccoides DSM 17374]
gi|329748477|gb|AEC01833.1| Transcription elongation factor, GreA/GreB, N-terminal protein
[Spirochaeta coccoides DSM 17374]
Length = 897
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 69/149 (46%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T D + EL + P + K I EAR GDL EN+EY+ KE Q L ++ +L
Sbjct: 745 TQASLDAKRAELDKIMNIDIPEVAKEIGEARELGDLRENSEYKYGKEKQTLLNAQIKKLL 804
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I RA+VI + + FG +SL + Y ++G E++ ++S +P+
Sbjct: 805 EEIDRAQVIQPGAVDTSKTGFGTRISLHDNIEDKDVVYTLMGPWESEPSKNILSFQAPLG 864
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156
L+ K +G S + + +L++
Sbjct: 865 TQLMNKTVGQNFSFEINDKKYDFTVLKIE 893
>gi|291548409|emb|CBL21517.1| Transcription elongation factor [Ruminococcus sp. SR1/5]
Length = 166
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ +T K +KI+QE+ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+
Sbjct: 2 REQLTRKDVEKIEQEIEHRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LE ++ A ++ ++ S D + V ++ + + + Y++V + +SI
Sbjct: 62 RYLERMLKTASIVSDASRS-DEVGMDDIVEVLFEEDNEVEKYKLVTSIRGNSMENRISIE 120
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
SPI +AL G +GD + V Y +++
Sbjct: 121 SPIGKALRGHRVGDRVEVKVNDDYSYYLVIK 151
>gi|189219263|ref|YP_001939904.1| transcription elongation factor GreA fused to uncharacterized
associated domain [Methylacidiphilum infernorum V4]
gi|189186121|gb|ACD83306.1| Transcription elongation factor GreA fused to uncharacterized
associated domain [Methylacidiphilum infernorum V4]
Length = 614
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 44/148 (29%), Positives = 81/148 (54%), Gaps = 1/148 (0%)
Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
+ ++ ++EL +++ P K I+ AR+YGDL EN EY+AAKE+Q + R AELE++
Sbjct: 458 ESLEQKKKELDELVRKKIPENSKDIAHARSYGDLRENHEYKAAKEMQVVLMRRKAELESM 517
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
I+RA D S + + G VS + + + I+G +++ G++S + ++
Sbjct: 518 ISRARATDFSNVDTTTVNIGTVVSYTDLKTNRTNSVAILGAWDSNPSKGIISYLAAFGQS 577
Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVL 156
L+G + GD++ V+ G I ++
Sbjct: 578 LLGHKTGDVLQVSLEDGITTEIRIDKIS 605
>gi|302865433|ref|YP_003834070.1| transcription elongation factor GreA [Micromonospora aurantiaca
ATCC 27029]
gi|315501981|ref|YP_004080868.1| transcription elongation factor grea [Micromonospora sp. L5]
gi|302568292|gb|ADL44494.1| transcription elongation factor GreA [Micromonospora aurantiaca
ATCC 27029]
gi|315408600|gb|ADU06717.1| transcription elongation factor GreA [Micromonospora sp. L5]
Length = 166
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 6/152 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ +D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+
Sbjct: 12 WLSQDAYDRLQAELDELIA-NRPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRILY 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123
L+ ++ A+V + D ++ G V + + D ++G +E + L S
Sbjct: 71 LKELLRTAKVGEAP--DTDAVSPGMVVKIYFDDDADDSETFLLGSREIASTTDLTVYSPE 128
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
S + +A++G + G + AP G + I+
Sbjct: 129 SALGKAILGGKAGQTCTYTAPSGADIKVTIVS 160
>gi|262189677|ref|ZP_06048051.1| transcription elongation factor GreA [Vibrio cholerae CT 5369-93]
gi|262034443|gb|EEY52809.1| transcription elongation factor GreA [Vibrio cholerae CT 5369-93]
Length = 144
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 56/126 (44%), Positives = 94/126 (74%), Gaps = 2/126 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T++G +K+ +E R + RP+I +AI+EAR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VID++ M ++ FGATV++++ NS ++K YQIVGD EAD++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGRI 119
Query: 121 SISSPI 126
S++SP+
Sbjct: 120 SVNSPM 125
>gi|325973303|ref|YP_004250367.1| transcription elongation factor GreA [Mycoplasma suis str.
Illinois]
gi|323651905|gb|ADX97987.1| transcription elongation factor GreA [Mycoplasma suis str.
Illinois]
Length = 158
Score = 113 bits (284), Expect = 8e-24, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 85/158 (53%), Gaps = 3/158 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + +T ++Q++L ERP++++ + +AR+ GDLSENA+Y +AK+ Q+ E
Sbjct: 1 MARHYITEAKLKELQKQLDNLVNVERPQVLEELKQARSLGDLSENADYDSAKQRQHEIEK 60
Query: 62 RMAELENIITRAEVID---ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
++ E+E I+ +ID S + G+ V + + + Y+I+G +AD +
Sbjct: 61 KVQEIEAILKNYSLIDKKGSSERGEKVVEIGSKVKIFHSLTNKEYVYEILGSLDADPANM 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SPIA+ ++GK +G V +IL++L
Sbjct: 121 KISNESPIAKTIMGKPVGGTYQVEGLKKSYYIKILEIL 158
>gi|145641637|ref|ZP_01797214.1| transcription elongation factor GreA [Haemophilus influenzae R3021]
gi|145273684|gb|EDK13553.1| transcription elongation factor GreA [Haemophilus influenzae
22.4-21]
Length = 107
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 47/102 (46%), Positives = 74/102 (72%), Gaps = 1/102 (0%)
Query: 58 LNEGRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
EGR+ E+E + A++ID++ M + ++ FGATV LV N+ ++ Y+IVGD EAD++
Sbjct: 6 FCEGRIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIK 65
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SGL+S++SPIAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 66 SGLISVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 107
>gi|257057149|ref|YP_003134981.1| transcription elongation factor GreA [Saccharomonospora viridis DSM
43017]
gi|256587021|gb|ACU98154.1| transcription elongation factor GreA [Saccharomonospora viridis DSM
43017]
Length = 172
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 60/144 (41%), Gaps = 1/144 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +D+++ EL RP I I+ +R GDL EN Y AA+E Q E R+
Sbjct: 11 WLTQDAYDRLKNELDELIA-NRPVIAAKINASREEGDLKENGGYHAAREEQGQQEARIRH 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ ++ A+V + G + + ++ ++ + S SP
Sbjct: 70 LQELLRSAKVGEAPKDDGIAEPGMVLTVRYDGDDDEETFLLATREEGGSGSLEVYSPDSP 129
Query: 126 IARALIGKELGDIISVNAPGGEKT 149
+ +AL+G + + P G+
Sbjct: 130 LGKALLGAKENESREYQLPNGKTQ 153
>gi|226322649|ref|ZP_03798167.1| hypothetical protein COPCOM_00421 [Coprococcus comes ATCC 27758]
gi|225208986|gb|EEG91340.1| hypothetical protein COPCOM_00421 [Coprococcus comes ATCC 27758]
Length = 167
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 81/150 (54%), Gaps = 2/150 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ +T KI++E++ R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+
Sbjct: 2 REQLTESDVKKIEEEIQHRKHVIRKEAIEAVKEARAQGDLSENFEYHAAKKYKNQNESRI 61
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LE ++ AE++ ++ G V++ +++ Y++V + +S
Sbjct: 62 RYLERMLKNAEIVSDTSEEG-VAGINNRVTVYFPEDDEEETYKLVTSIRGNSIHNYISTE 120
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153
SPI +A+ G + G+ + V + +YE++
Sbjct: 121 SPIGKAIFGHKAGETVKVKV-SDDYSYELV 149
>gi|160938130|ref|ZP_02085486.1| hypothetical protein CLOBOL_03024 [Clostridium bolteae ATCC
BAA-613]
gi|158438934|gb|EDP16690.1| hypothetical protein CLOBOL_03024 [Clostridium bolteae ATCC
BAA-613]
Length = 167
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/150 (33%), Positives = 87/150 (58%), Gaps = 2/150 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ K+Q+E+ +R+ R ++A+ EARA+GDLSEN EY+AAK+ +N NE R+ L
Sbjct: 5 LTANDIKKMQEEIEYRKLVVRREALEAVKEARAHGDLSENFEYKAAKQDKNRNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A +I ++ G+ + G TV + + + + Y++V + GL+SI SP+
Sbjct: 65 EKMIKTARIISNNSREGE-VGLGDTVEVYIPDDDETERYKLVTTVRGNSLQGLISIDSPL 123
Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQV 155
+A+ G+++GD + V EI +
Sbjct: 124 GKAIRGRKMGDKVYVKVDDHFGYDVEIRSI 153
>gi|699276|gb|AAA63039.1| greA [Mycobacterium leprae]
Length = 202
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ +
Sbjct: 46 WLTQESHDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 104
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L++++ A+V + SG + + D + + I QE + + + S +
Sbjct: 105 LQDLLNIAKVGEAPKQSGVALPGSVVKVYYNDDKSDTETFLIATRQEGVNEGKLEVYSPN 164
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ ALI ++G+ S P G
Sbjct: 165 SPLGGALIDAKVGETRSYTVPNG 187
>gi|256374856|ref|YP_003098516.1| transcription elongation factor GreA [Actinosynnema mirum DSM
43827]
gi|255919159|gb|ACU34670.1| transcription elongation factor GreA [Actinosynnema mirum DSM
43827]
Length = 162
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 69/145 (47%), Gaps = 1/145 (0%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +T + +D+++ EL E RP I I+ R GDL EN Y AA+E Q E
Sbjct: 4 TEVTWLTQEAYDRLKAELDEMI-ENRPVIAAEINARREEGDLRENGGYHAAREEQGKQEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ +L+ ++ A+V + T++G E + ++ ++ A + + S
Sbjct: 63 RIRQLQELLRVAKVGEAPTVTGIAAPGMVLTVRYEGDDETEEFLLATREEGAHGGTEVYS 122
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
SSP+ +AL+G + G+ P G
Sbjct: 123 PSSPLGKALLGAKEGETREYELPNG 147
>gi|145593481|ref|YP_001157778.1| transcription elongation factor GreA [Salinispora tropica CNB-440]
gi|145302818|gb|ABP53400.1| transcription elongation factor GreA [Salinispora tropica CNB-440]
Length = 165
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 6/152 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ + D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+
Sbjct: 11 WLSQEAHDRLQAELDGLIA-NRPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRIVY 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123
L+ ++ A+V + T D +A G V++ + D ++G +E + L S
Sbjct: 70 LKELLRTAQVGEAPT--ADTVAPGMVVTIYFDDDKDDTERFLLGSREISSTTDLTVYSPE 127
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
S I +A++G G + AP G + ++
Sbjct: 128 SAIGQAILGCRPGQTCTYTAPSGADIKVTVVA 159
>gi|331087098|ref|ZP_08336171.1| hypothetical protein HMPREF0987_02474 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330409187|gb|EGG88638.1| hypothetical protein HMPREF0987_02474 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 167
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/148 (30%), Positives = 82/148 (55%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T K+++E+ +R+ R +++ + EARA+GDLSEN EY AAK+ +N NE R+ L
Sbjct: 5 LTKNDIKKMREEIEYRKIVLRKELLEDVKEARAHGDLSENFEYHAAKKEKNKNESRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I A+++ D + TV L + + + +++V + GL+S SPI
Sbjct: 65 ERMIKTAKIV-SDESKEDEVGLNNTVHLYFEEDDEVEVFKLVTTVRGNSLKGLISTESPI 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+ ++GK+ GD + + G Y +++
Sbjct: 124 GKVILGKKAGDRVFIRVSGDAGYYVVIK 151
>gi|307128689|ref|YP_003880719.1| putative transcription elongation factor GreB [Candidatus Sulcia
muelleri CARI]
gi|306483151|gb|ADM90021.1| putative transcription elongation factor GreB [Candidatus Sulcia
muelleri CARI]
Length = 158
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 89/137 (64%), Gaps = 1/137 (0%)
Query: 21 WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIST 80
+ ER +IIKAISEAR GDLSEN+EY AAKE Q + E ++ L+ ++ +I+IS
Sbjct: 21 QLETIERKKIIKAISEARDKGDLSENSEYDAAKEAQKILELKIFNLKLKLSNTRLIEISK 80
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
+S +++ V + ++G+ +NY +V + E++++ +SI+SPIA LIGK++GDIIS
Sbjct: 81 ISTSQVSIFTKVKIKNIDNGNYQNYTLVPESESNIKKNKISINSPIAIGLIGKKIGDIIS 140
Query: 141 VNAPGGE-KTYEILQVL 156
+ P + +++++
Sbjct: 141 IKLPNNKIINLKLIKIK 157
>gi|160878872|ref|YP_001557840.1| GreA/GreB family elongation factor [Clostridium phytofermentans
ISDg]
gi|160427538|gb|ABX41101.1| GreA/GreB family elongation factor [Clostridium phytofermentans
ISDg]
Length = 167
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/148 (37%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T DK+Q+E+ +R+ R I A+ EARA+GDLSEN EY AAK+ +N NEGR+ L
Sbjct: 5 LTKNDIDKMQEEIEYRKLTVRKEAIDAVKEARAHGDLSENFEYYAAKKDKNKNEGRIRYL 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E +I AEVI+ + S D I TVS+ + + + Y+++ + GL+SI SP+
Sbjct: 65 ERMIKTAEVIEDHS-SEDEIGINNTVSIYFEEDNEIEKYKLITTVRENSLQGLISIESPL 123
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+A++G ++ D + V Y I++
Sbjct: 124 GKAILGHKVEDRVYVKVRDDYGYYVIIK 151
>gi|159036522|ref|YP_001535775.1| transcription elongation factor GreA [Salinispora arenicola
CNS-205]
gi|157915357|gb|ABV96784.1| transcription elongation factor GreA [Salinispora arenicola
CNS-205]
Length = 165
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ + +D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+
Sbjct: 11 WLSQEAYDRLQAELDGLIA-NRPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRILY 69
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123
L+ ++ A+V + T D IA G V++ + D ++G +E + L S
Sbjct: 70 LKELLRTAQVGEAPT--ADTIAPGMVVTIYFDDDKDDTERFLLGSREIASTTDLTVYSPE 127
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
S I +A++G G + AP G + ++
Sbjct: 128 SAIGQAILGCRSGQTCTYTAPSGADIKVTVVA 159
>gi|300934084|ref|ZP_07149340.1| transcription elongation factor GreA [Corynebacterium resistens DSM
45100]
Length = 173
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M D +T + +D++ EL + E RP + I+E R GDL EN Y AA+E Q
Sbjct: 1 MADNQTTWLTQESYDRLNAELTALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQ 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQ 116
E R+A LE ++ A + + SG + + + DK+ + I G + ++
Sbjct: 60 EEARIAYLEELLDNATIGEAPQESGVALVGSVIHVYYDDDEDDKETFLIGTRGLESSNPD 119
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
S +P+ A++G ++G+ P G+ I+
Sbjct: 120 LETYSTDAPLGAAIVGAKVGESREYQTPNGDTVKVTIVS 158
>gi|298345920|ref|YP_003718607.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063]
gi|304390376|ref|ZP_07372329.1| transcription elongation factor GreA [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315654508|ref|ZP_07907414.1| transcription elongation factor GreA [Mobiluncus curtisii ATCC
51333]
gi|315657583|ref|ZP_07910465.1| transcription elongation factor GreA [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|298235981|gb|ADI67113.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063]
gi|304326132|gb|EFL93377.1| transcription elongation factor GreA [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|315490972|gb|EFU80591.1| transcription elongation factor GreA [Mobiluncus curtisii ATCC
51333]
gi|315492055|gb|EFU81664.1| transcription elongation factor GreA [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length = 161
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/156 (35%), Positives = 79/156 (50%), Gaps = 8/156 (5%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
K +T FD++Q EL R R I K I AR GDL EN Y AA++ Q+ NE
Sbjct: 5 AKKNWMTQASFDRLQAELDERTGPIRSEITKKIDAARREGDLKENGGYHAARDEQSQNET 64
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119
R+ EL+ I+ AEV + +T I G+ +VE G KK ++G ++A + +
Sbjct: 65 RILELQEILKYAEVGEAAT--DGTIGPGS---VVEAKVGPKKMTFLLGSRDAAKGMDIQV 119
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK-TYEILQ 154
S +P+ AL G GD + AP G+K E+L
Sbjct: 120 FSPDAPLGVALAGHRTGDTVEYVAPTGKKIKVEVLD 155
>gi|325989739|ref|YP_004249438.1| transcription elongation factor GreA [Mycoplasma suis KI3806]
gi|323574824|emb|CBZ40484.1| Transcription elongation factor GreA [Mycoplasma suis]
Length = 161
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 45/156 (28%), Positives = 84/156 (53%), Gaps = 3/156 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ +T ++Q++L ERP++++ + +AR+ GDLSENA+Y +AK+ Q+ E ++
Sbjct: 6 RHYITEAKLKELQKQLDNLVNVERPQVLEELKQARSLGDLSENADYDSAKQRQHEIEKKV 65
Query: 64 AELENIITRAEVID---ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
E+E I+ +ID S + G+ V + + + Y+I+G +AD + +
Sbjct: 66 QEIEAILKNYSLIDKKGSSERGEKVVEIGSKVKIFHSLTNKEYVYEILGSLDADPANMKI 125
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SPIA+ ++GK +G V +IL++L
Sbjct: 126 SNESPIAKTIMGKPVGGTYQVEGLKKSYYIKILEIL 161
>gi|258654538|ref|YP_003203694.1| transcription elongation factor GreA [Nakamurella multipartita DSM
44233]
gi|258557763|gb|ACV80705.1| transcription elongation factor GreA [Nakamurella multipartita DSM
44233]
Length = 163
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 5/152 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I+ R GDL EN Y AA++ Q E R+
Sbjct: 8 WLTQEAHDRLKHELDELVLH-RPVIAAEINARREEGDLKENGGYHAARDEQAKQESRIRH 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ--SGLVSIS 123
L+ ++ A+V ++ + G V++ D K ++G +E V + S
Sbjct: 67 LQELLRDAQVG-VAPADDGVVEPGMVVTIAYDGDDDDKETFLLGSREEGVHGSMPVYSPQ 125
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
SP+ +A++G G+ P G + +++
Sbjct: 126 SPLGQAILGASRGESREYTLPNGRTQKVSVVE 157
>gi|46198988|ref|YP_004655.1| anti-cleavage anti-greA transcription factor gfh1 [Thermus
thermophilus HB27]
gi|109157536|pdb|2F23|A Chain A, Crystal Structure Of Grea Factor Homolog 1 (Gfh1) Protein
Of Thermus Thermophilus
gi|109157537|pdb|2F23|B Chain B, Crystal Structure Of Grea Factor Homolog 1 (Gfh1) Protein
Of Thermus Thermophilus
gi|18034647|gb|AAL57612.1|AF456235_1 anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
thermophilus]
gi|46196612|gb|AAS81028.1| anti-cleavage anti-greA transcription factor gfh1 [Thermus
thermophilus HB27]
Length = 156
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 92/157 (58%), Gaps = 5/157 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T G++++ Q+L R++E K + E D +++ +AAK+ + E
Sbjct: 1 MAREVKLTKAGYERLMQQLE-RERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE+I++RA +++ SG+ I G+ V L + SG++ + Q+V EA+V +
Sbjct: 60 ARIDSLEDILSRAVILEE--GSGEVIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPM 117
Query: 121 SIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
IS SP+ +AL+G +GD++S++ P G++ + ++ +
Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGKREFRVVAI 154
>gi|90109221|pdb|2ETN|A Chain A, Crystal Structure Of Thermus Aquaticus Gfh1
gi|90109222|pdb|2ETN|B Chain B, Crystal Structure Of Thermus Aquaticus Gfh1
gi|90109223|pdb|2ETN|C Chain C, Crystal Structure Of Thermus Aquaticus Gfh1
gi|18034643|gb|AAL57610.1|AF456233_1 anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
aquaticus]
Length = 157
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 90/157 (57%), Gaps = 5/157 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T G++++ ++L ++E K + E D +++ +AAK+ + E
Sbjct: 1 MAREVKLTKAGYERLMKQLEQ-ERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE++++RA +++ T G+ I G+ V L + +G++ + Q+V EA V +
Sbjct: 60 ARIDSLEDVLSRAVILEEGT--GEVIGLGSVVELEDPATGERLSVQVVSPAEASVLENPM 117
Query: 121 SIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
IS SP+ +AL+G +GD++S++ P G+K + ++ +
Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGKKEFRVVAI 154
>gi|225420455|ref|ZP_03762758.1| hypothetical protein CLOSTASPAR_06800 [Clostridium asparagiforme
DSM 15981]
gi|225040905|gb|EEG51151.1| hypothetical protein CLOSTASPAR_06800 [Clostridium asparagiforme
DSM 15981]
Length = 155
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 2/142 (1%)
Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
+ +E+ R+ R ++A+ EARA+GDLSEN EY+AAK+ +N NE R+ LE +I A+
Sbjct: 1 MMEEIEHRKLVVRRECLEAVKEARAHGDLSENFEYKAAKQDKNRNESRIRYLERMIKTAK 60
Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134
+I S D + TV + + + Y+IV + GL+SI SP+ +AL+G +
Sbjct: 61 II-SDKSSSDEVGLNDTVEVYIPEDDETERYKIVTTVRGNSLKGLISIDSPLGKALLGHK 119
Query: 135 LGDIISVNAPGG-EKTYEILQV 155
G+ + V EI +
Sbjct: 120 AGETVYVKVDERFGYEVEIRSI 141
>gi|46445720|ref|YP_007085.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Candidatus Protochlamydia amoebophila UWE25]
gi|46399361|emb|CAF22810.1| conserved hypothetical protein [Candidatus Protochlamydia
amoebophila UWE25]
Length = 723
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 81/152 (53%), Gaps = 5/152 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++I T +G+ KIQ +R E + I ARA GDL EN+E++ A+E + +
Sbjct: 570 EEIWTTEEGYLKIQDRIRQIGTVEVVENAREIEAARALGDLRENSEFKFAQERRARLQSE 629
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L RA +I + D + G+ + L++ G K Y I+G +AD + ++S+
Sbjct: 630 LKTLSEQFGRARIITPDDILTDEVGIGSVIDLIDSQ-GQKIRYSILGPWDADPEKNILSL 688
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+S A+A+IGK++GD ++T+++L
Sbjct: 689 NSKFAQAMIGKKIGDQFQFK----DETFKVLS 716
>gi|297620326|ref|YP_003708463.1| transcription elongation factor greA [Waddlia chondrophila WSU
86-1044]
gi|297375627|gb|ADI37457.1| transcription elongation factor greA [Waddlia chondrophila WSU
86-1044]
Length = 721
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 78/150 (52%), Gaps = 3/150 (2%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G+ K Q+ ++ E K + EAR++GDL EN+EY+ A E ++ + M L
Sbjct: 573 TEEGYRKTQERVKRIATVEMVENAKEVEEARSHGDLRENSEYKFACEKRSRLQSEMKMLS 632
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
++ A V+ + G V + E+ SG K+ + I+G EAD+ +G++S S IA
Sbjct: 633 KQLSAARVLTPEDVDSSIAGVGCIVEV-EEPSGAKEQFTILGPWEADIDNGIISYQSQIA 691
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ G ++GD + G L+ ++
Sbjct: 692 QAMSGHKIGDSFTFK--DGHYKITALKSVF 719
>gi|296140831|ref|YP_003648074.1| transcription elongation factor GreA [Tsukamurella paurometabola
DSM 20162]
gi|296028965|gb|ADG79735.1| transcription elongation factor GreA [Tsukamurella paurometabola
DSM 20162]
Length = 164
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 3/143 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+ + ++++ EL RP I I+E R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLPPESHERLKNELDALIA-NRPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
L+ ++ A+V + T SG + + + D + + I +E D + + S +
Sbjct: 67 LQELLNNAKVGEAPTQSGVALPGSVVKVYYDGDEKDTETFLIATREEGAQDGELEVYSPN 126
Query: 124 SPIARALIGKELGDIISVNAPGG 146
SP+ ALI ++G+ P G
Sbjct: 127 SPLGAALIDAKVGESREYTIPSG 149
>gi|55981011|ref|YP_144308.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
thermophilus HB8]
gi|83754983|pdb|2EUL|A Chain A, Structure Of The Transcription Factor Gfh1.
gi|83754984|pdb|2EUL|B Chain B, Structure Of The Transcription Factor Gfh1.
gi|83754985|pdb|2EUL|C Chain C, Structure Of The Transcription Factor Gfh1.
gi|83754986|pdb|2EUL|D Chain D, Structure Of The Transcription Factor Gfh1.
gi|313754180|pdb|3AOH|X Chain X, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
gi|313754181|pdb|3AOH|Y Chain Y, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
gi|313754182|pdb|3AOH|Z Chain Z, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
gi|313754204|pdb|3AOI|X Chain X, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
gi|313754205|pdb|3AOI|Y Chain Y, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
gi|313754206|pdb|3AOI|Z Chain Z, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
gi|55772424|dbj|BAD70865.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
thermophilus HB8]
Length = 156
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 45/157 (28%), Positives = 91/157 (57%), Gaps = 5/157 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T G++++ Q+L R++E K + E D +++ +AAK+ + E
Sbjct: 1 MAREVKLTKAGYERLMQQLE-RERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE+I++RA +++ SG+ I G+ V L + SG++ + Q+V EA+V +
Sbjct: 60 ARIDSLEDILSRAVILEE--GSGEVIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPM 117
Query: 121 SIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
IS SP+ +AL+G +GD++S++ P G + + ++ +
Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGRREFRVVAI 154
>gi|153813303|ref|ZP_01965971.1| hypothetical protein RUMOBE_03720 [Ruminococcus obeum ATCC 29174]
gi|149830593|gb|EDM85684.1| hypothetical protein RUMOBE_03720 [Ruminococcus obeum ATCC 29174]
Length = 208
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 49/130 (37%), Positives = 70/130 (53%), Gaps = 1/130 (0%)
Query: 21 WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIST 80
R+ R I+A+ EARA GDLSEN EY AAK+ +N NE R+ LE ++ A V+D S+
Sbjct: 61 HRKLVIRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRIRYLERMLKTATVVDDSS 120
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
S D + V + + G+ + Y++V + VSI SPI +AL G +GD +
Sbjct: 121 KS-DEVGMDDIVEVEFEEDGEVEKYKLVTSIRGNSMENRVSIESPIGKALKGHRVGDRVL 179
Query: 141 VNAPGGEKTY 150
VN Y
Sbjct: 180 VNVNENVSYY 189
>gi|302338551|ref|YP_003803757.1| transcription elongation factor GreA [Spirochaeta smaragdinae DSM
11293]
gi|301635736|gb|ADK81163.1| transcription elongation factor GreA [Spirochaeta smaragdinae DSM
11293]
Length = 894
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 44/150 (29%), Positives = 71/150 (47%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT K F+ +Q+L+ E K I A GDL ENAEY+A KE Q L +M +L
Sbjct: 740 VTRKTFEAKKQQLQHINDVEMKETSKEIGAAIELGDLKENAEYKAGKEKQELLNIQMQKL 799
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ I RA + D + +I+F V+L ++ K+ Y G E++ ++S SP
Sbjct: 800 KDEIDRAVIFDPADRDTSKISFATKVTLENLDTKKKETYSFFGPWESNPNENIISYLSPF 859
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
L + G+ + Y +L++
Sbjct: 860 GGKLWNHKEGEDLEFEINERVYHYSVLKIE 889
>gi|119025670|ref|YP_909515.1| transcription elongation factor GreA [Bifidobacterium adolescentis
ATCC 15703]
gi|154487515|ref|ZP_02028922.1| hypothetical protein BIFADO_01370 [Bifidobacterium adolescentis
L2-32]
gi|118765254|dbj|BAF39433.1| transcription elongation factor GreA [Bifidobacterium adolescentis
ATCC 15703]
gi|154084033|gb|EDN83078.1| hypothetical protein BIFADO_01370 [Bifidobacterium adolescentis
L2-32]
Length = 159
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 89/159 (55%), Gaps = 10/159 (6%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ I +T + +DK+++EL WR+ E R I+ +S ARA GDLSEN YQAA+E Q +
Sbjct: 1 MAEEKTILLTQEAYDKMKEELAWREGEYRDEILSKVSAARAEGDLSENGGYQAAREAQRV 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
N+GR+ EL + A+++ + G+ V+L + +G + Y + G ++ + +
Sbjct: 61 NQGRIDELTVKLRNAKILTAPK--AGEVGDGSLVTL--EVNGREMVYVL-GTRDLSIATD 115
Query: 119 L--VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
+S SPI A+ G GD ++ AP G E + I +
Sbjct: 116 YSIISPESPIGAAINGAHAGDTVTYTAPNGREISVTIKE 154
>gi|227497804|ref|ZP_03927989.1| transcription elongation factor GreA [Actinomyces urogenitalis DSM
15434]
gi|226832764|gb|EEH65147.1| transcription elongation factor GreA [Actinomyces urogenitalis DSM
15434]
Length = 165
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 8/155 (5%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +D++ EL RQ+ +R I + + AR GDL ENA Y AA+E LNE R+A+
Sbjct: 13 WLTKDAYDRLTAELARRQEVDRKEIAQRVEAARQEGDLRENAGYHAAREEAALNEARIAQ 72
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSG--LVSI 122
L ++ +AE+ +++ T + ++ + + G + ADV G + S
Sbjct: 73 LTELLEKAEIGEVADDGTVSAGTIVTAKI----GAKEQVFALGGQEITADVPEGVKVFSP 128
Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+P+ +AL+G + G+ +S AP G E EI+ V
Sbjct: 129 DAPLGKALMGHKAGETVSYQAPNGKEIKAEIIDVK 163
>gi|323359453|ref|YP_004225849.1| transcription elongation factor [Microbacterium testaceum StLB037]
gi|323275824|dbj|BAJ75969.1| transcription elongation factor [Microbacterium testaceum StLB037]
Length = 163
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D++ QEL R I K I AR GDL EN Y AAK+ Q E R+ L
Sbjct: 10 LTQDAYDRLAQELEHLSTTGREEIAKRIEIAREEGDLKENGGYHAAKDEQGKQEARIRTL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ A+V + + S + G V+ V G++K + A+ + + S +SP+
Sbjct: 70 QQLLKDAKVGE-APESHGVVESGTVVTAV-VAGGEEKFLLGNREIAANSELDVYSEASPL 127
Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156
A+IG + G+ S AP G E + EI++V
Sbjct: 128 GAAIIGLKEGEKGSYTAPNGKEISVEIVKVE 158
>gi|300087971|ref|YP_003758493.1| GreA/GreB family elongation factor [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527704|gb|ADJ26172.1| GreA/GreB family elongation factor [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 271
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 84/151 (55%), Gaps = 2/151 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T + ++ ++ + +R +++ I +A A DL ENA Y AA+E + +G++AEL
Sbjct: 122 ITLEQKKDMEVDVARLKD-KRVEVVEEIKKAAADKDLKENAPYHAAREEKAKLDGKIAEL 180
Query: 67 ENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E ++ +A V + SG + + G V++ SG +++V +E D ++G +S +SP
Sbjct: 181 EMMLKQAVVQEKHMTSGKKKVEVGRQVTVTNLASGQVTKFKLVIAREVDPKNGCISPASP 240
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
I +A++G+ +GD + V AP Y I +
Sbjct: 241 IGKAIMGRYIGDTVEVVAPACTNRYCINSIE 271
>gi|319949700|ref|ZP_08023731.1| transcription elongation factor GreA [Dietzia cinnamea P4]
gi|319436630|gb|EFV91719.1| transcription elongation factor GreA [Dietzia cinnamea P4]
Length = 165
Score = 109 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 3/145 (2%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +D++ E RP I I+E R GDL ENA Y AA+E Q E R+
Sbjct: 9 WLTQDSYDRLMAEKEALIA-NRPVIAAEINERREEGDLKENAGYHAAREQQGQEEARIRT 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123
+++++ A+V + T SG + + N K+ + I E + L S
Sbjct: 68 IDDLLANAQVGETPTESGVALIGSVVRAYYNGNEDTKETFLIGTRGEGSGKDDLEIYSPD 127
Query: 124 SPIARALIGKELGDIISVNAPGGEK 148
SP+ +A++G + G+ AP G+K
Sbjct: 128 SPLGKAVLGAKNGETREYTAPNGKK 152
>gi|218296574|ref|ZP_03497302.1| GreA/GreB family elongation factor [Thermus aquaticus Y51MC23]
gi|218243116|gb|EED09648.1| GreA/GreB family elongation factor [Thermus aquaticus Y51MC23]
Length = 156
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 90/157 (57%), Gaps = 5/157 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T G++++ ++L ++E K + E D +++ +AAK+ + E
Sbjct: 1 MAREVKLTKAGYERLMKQLEQ-ERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE++++RA +++ T G+ I G+ V L + +G++ + Q+V EA V +
Sbjct: 60 ARIDSLEDVLSRAVILEEGT--GEVIGLGSVVELEDPATGERLSVQVVSPAEASVLETPM 117
Query: 121 SIS--SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
IS SP+ +AL+G +GD++S++ P G+K + ++ V
Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGKKEFRVVAV 154
>gi|25027606|ref|NP_737660.1| transcription elongation factor GreA [Corynebacterium efficiens
YS-314]
gi|23492888|dbj|BAC17860.1| putative transcription elongation factor GreA [Corynebacterium
efficiens YS-314]
Length = 217
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 4/156 (2%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
DK +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ E
Sbjct: 47 ADKQYITPEMKAKLEEELNTLIA-RRPIVAAEINERREEGDLKENAGYDAAREMQDQEEA 105
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119
R+ ++ ++ A + G + + DK+ + I A +
Sbjct: 106 RIKQISEVLANATTEREGIVEGVANVGSVVHVYYDGDESDKETFLIGTRAAATDNPDLET 165
Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
S SP+ A++G G+ P G + I+
Sbjct: 166 YSEQSPLGAAILGAHEGETREYTTPNGSAVSVTIVS 201
>gi|313679936|ref|YP_004057675.1| grea/greb family elongation factor [Oceanithermus profundus DSM
14977]
gi|313152651|gb|ADR36502.1| GreA/GreB family elongation factor [Oceanithermus profundus DSM
14977]
Length = 156
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 84/157 (53%), Gaps = 5/157 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T G++++Q EL ++ + + E + E++ + AK + E
Sbjct: 1 MAREVKLTKAGYERLQLELAEEKK-RLEEATRILQEQMESFEDYEDSGLEEAKREKAQIE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE+I+ RA +I+ + GD++ G+ V + ++ +G+ QIV EA V +
Sbjct: 60 ARVDALEDILHRAVIIESAE--GDKVTLGSVVVVQDEKTGESLTLQIVAPAEATVLEEPM 117
Query: 121 --SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S SP+ +AL+G++ GD + V+ P G++ Y IL V
Sbjct: 118 RVSDESPLGKALLGRKEGDKVRVDTPSGKRRYRILSV 154
>gi|260906828|ref|ZP_05915150.1| GreA/GreB family elongation factor [Brevibacterium linens BL2]
Length = 164
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/157 (29%), Positives = 75/157 (47%), Gaps = 7/157 (4%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++ +T + FD++ QEL R I + I AR GDL EN Y AA+E Q E R
Sbjct: 8 EETWLTQEAFDRLSQELEHLSGPGRAEIAEKIEAARDEGDLKENGGYHAAREEQGKQEAR 67
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLV 120
+ +LE ++ A+V S G ++ G+ V+ + + ++G +E D +
Sbjct: 68 IRQLELLLQSAKVG-SSDSDGKTVSPGSVVTAKVAGNDMR---FLLGSREIAGDSDIDVF 123
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
S SP+ A++G +G S AP G E E+ +
Sbjct: 124 SEKSPLGAAVLGVAVGGKTSYEAPNGKEIKVEVKGIE 160
>gi|258614382|ref|ZP_05712152.1| transcription elongation factor GreA [Enterococcus faecium DO]
Length = 130
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 56/130 (43%), Positives = 87/130 (66%), Gaps = 1/130 (0%)
Query: 1 MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
MV+K+ P+T +G +K+++EL + +R II+ I AR +GDLSEN+EY++AK+ Q
Sbjct: 1 MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EGR+ +EN+I A++ID + D ++ G TV+ +E G+++ Y IVG EAD SG
Sbjct: 61 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 120
Query: 120 VSISSPIARA 129
+S SPIA+A
Sbjct: 121 ISNDSPIAQA 130
>gi|170782755|ref|YP_001711089.1| putative transcription elongation factor [Clavibacter michiganensis
subsp. sepedonicus]
gi|169157325|emb|CAQ02512.1| putative transcription elongation factor [Clavibacter michiganensis
subsp. sepedonicus]
Length = 162
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 52/161 (32%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 1 MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M + +T + FD++ +EL + R I K I AR GDL EN Y AAKE Q
Sbjct: 1 MAQEQAVTWLTQEAFDRLSRELDTLSVQGREEIAKKIEIAREEGDLKENGGYHAAKEEQG 60
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQ 116
E R+ +L ++ AEV D + S + G V+ +GD+ + + + A D
Sbjct: 61 KIEARIRQLTQLLRTAEVGD-APESHGVVEPGTVVT--ALIAGDETKFLLGNREIAGDSD 117
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+ S SP+ A+IG E+G + AP G E EI V
Sbjct: 118 LDVYSEQSPLGAAIIGWEVGQKGAYTAPNGREIPVEIQAVE 158
>gi|313201038|ref|YP_004039696.1| grea/greb family elongation factor [Methylovorus sp. MP688]
gi|312440354|gb|ADQ84460.1| GreA/GreB family elongation factor [Methylovorus sp. MP688]
Length = 167
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT G +QQ+++ ++E LS + A++ ++ +
Sbjct: 29 YVTPHGLQLLQQDMQALEKER--------------ATLSARKDDPTAQQRLSMINRDLRY 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + A ++D + S +++ FGA VE + G ++ +QIVG+ EAD+ VS SP
Sbjct: 75 LEARLEAAIIVDPTQQSREQVLFGA-HVHVEDDEGQRQVFQIVGEDEADIAQNKVSWISP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALIG + G++++ P G EI+ + +
Sbjct: 134 LARALIGHKRGEVVTWQRPAGNLELEIMDIHY 165
>gi|223940861|ref|ZP_03632689.1| GreA/GreB family elongation factor [bacterium Ellin514]
gi|223890471|gb|EEF57004.1| GreA/GreB family elongation factor [bacterium Ellin514]
Length = 606
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 82/145 (56%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
++ + E Q++ P K I+ AR+YGDL EN EY+AAKE+Q + R AELE+ +
Sbjct: 457 LERRKNEYAELVQKKIPANSKEIAIARSYGDLRENHEYKAAKEMQKILMRRKAELESELV 516
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
RA D D ++ G V + + NS +++ I+G ++D + ++S +P+A++L+
Sbjct: 517 RARGTDYLNPKTDAVSIGTIVKVTDLNSSHIEHFNILGAWDSDPEKNVISYLAPLAQSLL 576
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
++ G+ + G ++ + I ++
Sbjct: 577 NRKPGEEVDYEMDGQKRRFRIDEIT 601
>gi|212716148|ref|ZP_03324276.1| hypothetical protein BIFCAT_01063 [Bifidobacterium catenulatum DSM
16992]
gi|225351851|ref|ZP_03742874.1| hypothetical protein BIFPSEUDO_03453 [Bifidobacterium
pseudocatenulatum DSM 20438]
gi|212661515|gb|EEB22090.1| hypothetical protein BIFCAT_01063 [Bifidobacterium catenulatum DSM
16992]
gi|225157098|gb|EEG70437.1| hypothetical protein BIFPSEUDO_03453 [Bifidobacterium
pseudocatenulatum DSM 20438]
Length = 159
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/159 (33%), Positives = 88/159 (55%), Gaps = 10/159 (6%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ + +T + +DK+++EL WR+ E R I+ +S ARA GDLSEN YQAA+E Q +
Sbjct: 1 MAEEKTLLLTQEAYDKMKEELAWREGEYRDEILSKVSAARAEGDLSENGGYQAAREAQRV 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
N+GR+ EL + A+++ + G+ V+L +G + Y + G ++ + +
Sbjct: 61 NQGRIEELTVKLRNAKILTAPK--AGEVGDGSLVTL--DVNGREMVYVL-GTRDLSIATD 115
Query: 119 L--VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
+S SPI A+ G GD +S AP G E + I +
Sbjct: 116 YSIISPESPIGAAINGAHEGDTVSYTAPNGREISVTIKE 154
>gi|171743230|ref|ZP_02919037.1| hypothetical protein BIFDEN_02358 [Bifidobacterium dentium ATCC
27678]
gi|283455792|ref|YP_003360356.1| transcription elongation factor GreA [Bifidobacterium dentium Bd1]
gi|306823073|ref|ZP_07456449.1| possible transcription elongation factor GreA [Bifidobacterium
dentium ATCC 27679]
gi|309801121|ref|ZP_07695250.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Bifidobacterium dentium JCVIHMP022]
gi|171278844|gb|EDT46505.1| hypothetical protein BIFDEN_02358 [Bifidobacterium dentium ATCC
27678]
gi|283102426|gb|ADB09532.1| Transcription elongation factor GreA [Bifidobacterium dentium Bd1]
gi|304553705|gb|EFM41616.1| possible transcription elongation factor GreA [Bifidobacterium
dentium ATCC 27679]
gi|308222010|gb|EFO78293.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
domain protein [Bifidobacterium dentium JCVIHMP022]
Length = 159
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 8/156 (5%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ + +T + +DK+++EL WR+ E R I+ +S ARA GDLSEN YQAA+E Q +
Sbjct: 1 MAEEKTLLLTQEAYDKMKEELAWREGEYRDEILSKVSAARAEGDLSENGGYQAAREAQRV 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQS 117
N+GR+ EL + A+++ + G+ V+L + +G + Y +
Sbjct: 61 NQGRIDELTVKLRNAKILTAPKE--GEVGDGSVVTL--ELNGRELVYVLGTRDLSIATDY 116
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEI 152
++S SPI A+ G GD +S AP G E + I
Sbjct: 117 DIISPESPIGAAINGAHAGDTVSYTAPNGREISVTI 152
>gi|320450007|ref|YP_004202103.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
scotoductus SA-01]
gi|320150176|gb|ADW21554.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
scotoductus SA-01]
Length = 156
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 88/158 (55%), Gaps = 5/158 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T G++++ Q+L ++E + + E D +++ +AAK+ + E
Sbjct: 1 MAREVKLTKAGYERLMQQLLQ-ERERLQEATRILQELMESSDDYDDSGLEAAKQEKARIE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ LE+I++RA +I+ +T + I G+ V L + +G++ Q+V EA V +
Sbjct: 60 ARIDSLEDILSRAVIIEGAT--TEVIGLGSVVELEDPVTGERLEVQVVSPAEASVLETPM 117
Query: 121 SIS--SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
IS SP+ +AL+G GD++S++ P G+K + ++ V
Sbjct: 118 KISDASPMGKALLGHREGDVLSLDTPKGKKEFRVVSVR 155
>gi|13357864|ref|NP_078138.1| transcription elongation factor [Ureaplasma parvum serovar 3 str.
ATCC 700970]
gi|170762258|ref|YP_001752386.1| transcription elongation factor GreA [Ureaplasma parvum serovar 3
str. ATCC 27815]
gi|171920165|ref|ZP_02691337.2| transcription elongation factor GreA [Ureaplasma parvum serovar 1
str. ATCC 27813]
gi|183508821|ref|ZP_02958274.1| transcription elongation factor GreA [Ureaplasma parvum serovar 14
str. ATCC 33697]
gi|186701835|ref|ZP_02971503.1| transcription elongation factor GreA [Ureaplasma parvum serovar 6
str. ATCC 27818]
gi|11132421|sp|Q9PQI7|GREA_UREPA RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|189042253|sp|B1AIU2|GREA_UREP2 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|11279752|pir||G82906 transcription elongation factor UU304 [imported] - Ureaplasma
urealyticum
gi|6899280|gb|AAF30713.1|AE002128_1 transcription elongation factor [Ureaplasma parvum serovar 3 str.
ATCC 700970]
gi|168827835|gb|ACA33097.1| transcription elongation factor GreA [Ureaplasma parvum serovar 3
str. ATCC 27815]
gi|171902538|gb|EDT48827.1| transcription elongation factor GreA [Ureaplasma parvum serovar 1
str. ATCC 27813]
gi|182675786|gb|EDT87691.1| transcription elongation factor GreA [Ureaplasma parvum serovar 14
str. ATCC 33697]
gi|186701123|gb|EDU19405.1| transcription elongation factor GreA [Ureaplasma parvum serovar 6
str. ATCC 27818]
Length = 156
Score = 107 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 73/134 (54%)
Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
+ P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S
Sbjct: 22 LDVKWPAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVLRS 81
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
D ++ G+T+ + ++ +VG ++D + +SI +P+ +AL+ ++ G ++V+
Sbjct: 82 TDEVSIGSTIEIYNYQKDCEEVITLVGSMDSDPFANKISIDTPLGKALVKQKKGTEVTVH 141
Query: 143 APGGEKTYEILQVL 156
+I++++
Sbjct: 142 TLASPYKVKIIKII 155
>gi|19552211|ref|NP_600213.1| transcription elongation factor GreA [Corynebacterium glutamicum
ATCC 13032]
gi|62389876|ref|YP_225278.1| transcription elongation factor GreA [Corynebacterium glutamicum
ATCC 13032]
gi|21323753|dbj|BAB98379.1| Transcription elongation factor [Corynebacterium glutamicum ATCC
13032]
gi|41325211|emb|CAF19692.1| Transcription elongation factor [Corynebacterium glutamicum ATCC
13032]
Length = 174
Score = 107 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 4/156 (2%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
VDK +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ E
Sbjct: 4 VDKQYITPETKAKLEEELNALIAH-RPAVAAEINERREEGDLKENAGYDAAREMQDQEEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119
R+ ++ ++ + + G + + DK+ + I A +
Sbjct: 63 RIKQISELLANSTTEREGIIEGVANVGSVVHVYYDGDENDKETFLIGTRAGASENPDLET 122
Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
S SP+ A++G + GD AP G + ++
Sbjct: 123 YSEQSPLGAAILGAQEGDTRQYTAPNGSVISVTVVS 158
>gi|134093324|ref|YP_001098399.1| putative transcription elongation factor GreA/GreB [Herminiimonas
arsenicoxydans]
gi|133737227|emb|CAL60270.1| putative transcription elongation factor GreB [Herminiimonas
arsenicoxydans]
Length = 193
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 80/153 (52%), Gaps = 8/153 (5%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+ +Q EL+ E + ++ E SE + + +E E R+
Sbjct: 28 YITLAGYRHLQSELQRLMNEAQSAAVRE--ENPDNATFSEMSPERTVRE----IEQRIHY 81
Query: 66 LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L+ + AE++D +G+ +I FGA V+ SG++++ IVG E D +G +S S
Sbjct: 82 LQARLEMAEIVDPGVHAGEEQIFFGANVTYQ-HESGEQQSVTIVGLDELDPANGRISWLS 140
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+A++L+G GD +++ +P G++ ++L V +
Sbjct: 141 PVAQSLLGAYAGDEVTLESPAGKEVLKVLAVHY 173
>gi|296118180|ref|ZP_06836761.1| transcription elongation factor GreA [Corynebacterium ammoniagenes
DSM 20306]
gi|295968738|gb|EFG81982.1| transcription elongation factor GreA [Corynebacterium ammoniagenes
DSM 20306]
Length = 172
Score = 107 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 5/158 (3%)
Query: 1 MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M + K +T + K++ EL+ RP + I+E R GDL ENA Y AA+E+Q+
Sbjct: 1 MAEQKQYITPETKAKLEAELQMLID-RRPEVAAEINERREEGDLKENAGYDAAREMQDQE 59
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E R+ ++ ++ A G + DK+ + I A L
Sbjct: 60 EARIKQISEVLANATTEREGIQDGVAAIGSVVHVYYNGDEEDKETFLIGTRAAASDNKDL 119
Query: 120 --VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
S SP+ A++G + G+ AP G+ + I+
Sbjct: 120 ETYSEQSPLGAAILGAQEGETREYTAPNGKALSVTIIS 157
>gi|284989519|ref|YP_003408073.1| transcription elongation factor GreA [Geodermatophilus obscurus DSM
43160]
gi|284062764|gb|ADB73702.1| transcription elongation factor GreA [Geodermatophilus obscurus DSM
43160]
Length = 167
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
+ +T + D+++ EL RP + I+ R GDL EN Y AAK+ Q E R+
Sbjct: 12 VWLTQEAHDRLRAELDQLVA-GRPAMAAEINARREEGDLRENGGYHAAKDEQGKQEARIR 70
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSI 122
+LE+++ +A V D T + A G +++ + D + + ++G +E +GL S
Sbjct: 71 QLEDLLRKARVGDAPTTATHA-ATGTVITIRFRGEDDTEKF-LLGSREIAGTTGLQVYSP 128
Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
S + A++G E G ++ AP G + T +++ V
Sbjct: 129 ESALGSAILGAEPGTTVTYQAPNGRDITVDVVAVE 163
>gi|145295136|ref|YP_001137957.1| transcription elongation factor GreA [Corynebacterium glutamicum R]
gi|140845056|dbj|BAF54055.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 174
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 4/156 (2%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
VDK +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ E
Sbjct: 4 VDKQYITPETKAKLEEELNALIAH-RPAVAAEINERREEGDLKENAGYDAAREMQDQEEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119
R+ ++ ++ + + G + + DK+ + I A +
Sbjct: 63 RIKQISELLANSTTEREGIIEGVANVGSVVHVYYDGDENDKETFLIGTRAGASENPDLET 122
Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
S SP+ A++G + GD AP G + ++
Sbjct: 123 YSEQSPLGAAILGAQEGDTRQYTAPNGSVISVTVVS 158
>gi|315606055|ref|ZP_07881086.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
180 str. F0310]
gi|315312337|gb|EFU60423.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
180 str. F0310]
Length = 159
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 7/157 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D +T +D + EL+ R + +R I + I AR GDL EN Y AA+ Q++NE
Sbjct: 1 MADTQWLTQAQYDLLANELKERIEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118
R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+
Sbjct: 61 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQTF-LLGSRDAGGDLGIQ 116
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
+ S +P+ A+IG + GD +S AP G EIL
Sbjct: 117 VFSAQAPLGAAVIGHKAGDKLSFEAPTGRMIDVEILD 153
>gi|88856089|ref|ZP_01130750.1| transcription elongation factor [marine actinobacterium PHSC20C1]
gi|88814657|gb|EAR24518.1| transcription elongation factor [marine actinobacterium PHSC20C1]
Length = 163
Score = 107 bits (268), Expect = 6e-22, Method: Composition-based stats.
Identities = 48/154 (31%), Positives = 71/154 (46%), Gaps = 8/154 (5%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + FD+ EL E R I K I AR GDL EN Y AAKE Q E R+
Sbjct: 9 WLTQEAFDRRTAELEQLTGEARYDIAKKIEAAREEGDLKENGGYHAAKEEQGKIEARIRV 68
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA---DVQSGLVSI 122
L ++ A V D+ G + G V+ +++ ++G +E + S
Sbjct: 69 LTELLRHAVVGDVQDADG-LVEPGILVTAKIMG---EESVFLLGSREIVADGSDLDVYSE 124
Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
SP+ A+ G ++G + AP G + T EIL+V
Sbjct: 125 KSPLGLAINGLKVGSSATYTAPNGKDITVEILKV 158
>gi|154507712|ref|ZP_02043354.1| hypothetical protein ACTODO_00193 [Actinomyces odontolyticus ATCC
17982]
gi|153797346|gb|EDN79766.1| hypothetical protein ACTODO_00193 [Actinomyces odontolyticus ATCC
17982]
Length = 178
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 7/157 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D +T +D + EL+ R + +R I + I AR GDL EN Y AA+ Q++NE
Sbjct: 20 MADTQWLTQAQYDLLASELKERVEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE 79
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118
R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+
Sbjct: 80 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQKF-LLGSRDAGGDLGIQ 135
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
+ S +P+ A+IG + GD +S AP G EIL
Sbjct: 136 VFSAQAPLGAAVIGHKAGDKLSFEAPTGRMIDVEILD 172
>gi|328950624|ref|YP_004367959.1| GreA/GreB family elongation factor [Marinithermus hydrothermalis
DSM 14884]
gi|328450948|gb|AEB11849.1| GreA/GreB family elongation factor [Marinithermus hydrothermalis
DSM 14884]
Length = 156
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 4/157 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +T G+++++ +L + + + + E + E++ + AK + E
Sbjct: 1 MAREIKLTKAGYERLKAQLEQ-EYQRLAEATRILQEQMESFEDYEDSGLEDAKREKARIE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL- 119
R+ LE+ ++RA +++ S G +A G+ + L + SG+ QIV EA V
Sbjct: 60 ARIDSLEDTLSRAVILEDSQG-GQVVALGSRLVLQDAESGEGYEIQIVAPAEASVLEEPL 118
Query: 120 -VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+S SP+ AL+G+ G+ + V P G + Y I+ V
Sbjct: 119 KISDESPVGSALLGRREGESVRVETPRGIREYRIISV 155
>gi|289168331|ref|YP_003446600.1| transcription elongation factor related to GreA [Streptococcus
mitis B6]
gi|288907898|emb|CBJ22738.1| transcription elongation factor related to GreA [Streptococcus
mitis B6]
Length = 150
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 52/135 (38%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M +K P+T +K+++EL + RP +++ I AR+YGDLSEN+EY+AAK+ Q
Sbjct: 1 MAEKTYPMTLAEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
EG+++ LE I AE+++ +++ D +A G TV++ E +++ Y IVG AD +G
Sbjct: 61 EGQISSLETKIRYAEIVNSDSVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120
Query: 120 VSISSPIARALIGKE 134
VS SPI +AL+ ++
Sbjct: 121 VSNESPIGQALLARK 135
>gi|166153878|gb|ABY82795.1| transcription elongation factor [Listonella anguillarum]
Length = 126
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 54/127 (42%), Positives = 93/127 (73%), Gaps = 2/127 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K+P+T +G +++ +E R + RP+I +AI+ AR GDL ENAEY AA+E Q + E
Sbjct: 1 MEKVPMTVRG-EQLLREELDRLLKLRPQITQAIATARELGDLKENAEYHAAREEQGICEA 59
Query: 62 RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
++ ++E ++ A+VIDI+ M + ++ FG+TV+L++ ++ + K YQIVG+ EA+++SG +
Sbjct: 60 QIRDIEYKLSVAQVIDITKMENTGKVIFGSTVTLIDSDTDEVKRYQIVGEDEAEIKSGRI 119
Query: 121 SISSPIA 127
S+SSPIA
Sbjct: 120 SVSSPIA 126
>gi|269219222|ref|ZP_06163076.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
848 str. F0332]
gi|269211369|gb|EEZ77709.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
848 str. F0332]
Length = 161
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 6/157 (3%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ ++ + +++++ EL R I + I AR GDL EN YQAA+E Q+ EG
Sbjct: 5 SKRAWLSPESYERLRAELEEMTTVRRAEIARKIEAARNEGDLRENGGYQAAREEQSKLEG 64
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+AEL +++ A V + + + T + G+++ + I + +D +
Sbjct: 65 RIAELTHLLENATVSEPPAATEVQAGVIVTAKIA----GEEERFLIGSREASDHLDIEIY 120
Query: 122 ISS-PIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
S P+ +A++G + G+ P G K + EI+++
Sbjct: 121 PESAPLGKAILGLKEGESTKFATPTGRKISVEIVKIE 157
>gi|253998935|ref|YP_003050998.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4]
gi|253985614|gb|ACT50471.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4]
Length = 167
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 76/152 (50%), Gaps = 15/152 (9%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT G +QQ+++ ++E LS + A++ ++ +
Sbjct: 29 YVTPHGLYLLQQDMQALEKER--------------ATLSARKDDPTAQQRLSMINRDLRY 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + A ++D + S +++ FGA VE + G ++ +QIVG+ EAD+ VS SP
Sbjct: 75 LEARLETAIIVDPTQQSREQVLFGA-HVHVEDDEGQRQVFQIVGEDEADIAQNKVSWISP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ARALIG + G++++ P G EI+ + +
Sbjct: 134 LARALIGHKRGEVVTWQRPAGNLELEIMDIHY 165
>gi|148273428|ref|YP_001222989.1| transcription elongation factor GreA [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147831358|emb|CAN02314.1| transcription elongation factor GreA [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 162
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 8/161 (4%)
Query: 1 MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M + +T + FD++ +EL + R I K I AR GDL EN Y AAKE Q
Sbjct: 1 MAQEQAVTWLTQEAFDRLSRELDTLSVQGREEIAKKIEIAREEGDLKENGGYHAAKEEQG 60
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQ 116
E R+ +L ++ AE+ D + S + G V+ +GD+ + + + A D
Sbjct: 61 KIEARIRQLTQLLRTAELGD-APESHGVVEPGTVVT--ALIAGDETKFLLGNREIAGDSD 117
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+ S SP+ A+IG E+G + AP G E EI V
Sbjct: 118 LDVYSEQSPLGAAIIGWEVGQKGAYTAPNGREIPVEIQAVE 158
>gi|108761121|ref|YP_634997.1| GreA/GreB family transcription elongation factor [Myxococcus
xanthus DK 1622]
gi|108465001|gb|ABF90186.1| transcription elongation factor, GreA/GreB family [Myxococcus
xanthus DK 1622]
Length = 167
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 20/157 (12%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQA--AKELQNLNE 60
+K +T +G+ +Q+EL A A G + E+ A + E
Sbjct: 26 EKRYITPEGYRALQEEL-----------------AAAQGPDPKAGEFTELEAGVRRKERE 68
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ EL ++ V++ R+ FGA V L +++ G + Y+IVG E+DV++G +
Sbjct: 69 RRVQELAAVLEDVRVVEPDASQAGRVFFGAWVELEDEDGGPVR-YRIVGPDESDVKAGRL 127
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+ SP+ARAL+GKE+G+ + V+ P G Y + V +
Sbjct: 128 SVESPLARALLGKEVGESVVVDRPRGPVEYTVTAVDY 164
>gi|294786772|ref|ZP_06752026.1| transcription elongation factor GreA [Parascardovia denticolens
F0305]
gi|315226395|ref|ZP_07868183.1| transcription elongation factor GreA [Parascardovia denticolens DSM
10105]
gi|294485605|gb|EFG33239.1| transcription elongation factor GreA [Parascardovia denticolens
F0305]
gi|315120527|gb|EFT83659.1| transcription elongation factor GreA [Parascardovia denticolens DSM
10105]
Length = 158
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 7/157 (4%)
Query: 1 MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M ++ +T + +DK+++EL +R+ + R I I+ ARA GDLSEN YQAA+E Q
Sbjct: 1 MAEEKVYLLTQEAYDKLKEELTYREGDLREEIKAKIAAARAEGDLSENGGYQAAREEQGK 60
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQS 117
NEGR+ EL + ++++ ++ G+ V L + +G++ Y + A
Sbjct: 61 NEGRIQELTVKLRDSQILKAPK--AGKVGPGSLVVL--EIAGNEMTYVLGSHDLAVATDF 116
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
++S SPI A+ GK+ GD ++ AP G + I++
Sbjct: 117 DIISPESPIGAAINGKKKGDTVTYAAPNGREITVIIK 153
>gi|238062787|ref|ZP_04607496.1| transcription elongation factor greA [Micromonospora sp. ATCC
39149]
gi|237884598|gb|EEP73426.1| transcription elongation factor greA [Micromonospora sp. ATCC
39149]
Length = 166
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 6/151 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ D++Q EL RP I I+ R GDL EN Y AA+E Q EGR+
Sbjct: 12 WLSQDAHDRLQAELDELIA-NRPAIAAEINARREEGDLRENGGYHAAREEQGKQEGRILY 70
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123
L+ ++ A+V + S D ++ G V++ + D ++G +E + L S
Sbjct: 71 LKELLRTAQVGEAP--SADTVSPGMVVTIYFDDDTDDTETFLLGSREISSTTELTVYSPE 128
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEIL 153
S + ++++G G ++ AP G + ++
Sbjct: 129 SALGKSILGTRPGQTVTYTAPSGADIKVTVV 159
>gi|227504093|ref|ZP_03934142.1| transcription elongation factor GreA [Corynebacterium striatum ATCC
6940]
gi|227199327|gb|EEI79375.1| transcription elongation factor GreA [Corynebacterium striatum ATCC
6940]
Length = 173
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 5/151 (3%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + K +T + K++ EL+ RP + I+E R GDL ENA Y AA+E+Q+
Sbjct: 1 MAEQQKQYITPETKAKLEAELQALIDH-RPVVAAEINERREEGDLKENAGYDAAREMQDQ 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ ++ ++ A + G + DK+ + I A
Sbjct: 60 EEARIKQISEVLANATTERTAIQEGVAAIGSVVHVYYNGDKDDKETFLIGTRAAASDNKD 119
Query: 119 L--VSISSPIARALIGKELGDIISVNAPGGE 147
L S SP+ ALIG G+ AP G+
Sbjct: 120 LETYSEQSPLGAALIGAHEGETREYTAPNGK 150
>gi|187735038|ref|YP_001877150.1| GreA/GreB family elongation factor [Akkermansia muciniphila ATCC
BAA-835]
gi|187425090|gb|ACD04369.1| GreA/GreB family elongation factor [Akkermansia muciniphila ATCC
BAA-835]
Length = 615
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 2/156 (1%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ I V+ + + ++EL + P + +RA GDL EN YQ AKE++ + R
Sbjct: 457 EPIFVSWESLEARKKELEELVNVKIPENLHNKKISRAEGDLRENGGYQDAKEVEKVLNRR 516
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
AELE+ + A D + R A G V+L N G+ Y I+G + + + +VS
Sbjct: 517 RAELEHALALARGTDFAVTDTSRAAMGTKVTLQPLNGGEPVVYTILGAWDTNPEKHIVSY 576
Query: 123 SSPIARALIGKELGDIISVNAPGGEKT--YEILQVL 156
S + + L GK +GD + + G+K Y I ++
Sbjct: 577 LSQVGKELTGKSVGDQVKIVPMDGDKKKVYTITKIE 612
>gi|293189385|ref|ZP_06608108.1| transcription elongation factor GreA [Actinomyces odontolyticus
F0309]
gi|292821848|gb|EFF80784.1| transcription elongation factor GreA [Actinomyces odontolyticus
F0309]
Length = 159
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 7/157 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D +T +D + EL+ R + +R I + I AR GDL EN Y AA+ Q++NE
Sbjct: 1 MADTQWLTQAQYDLLASELKERVEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE 60
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSG 118
R+ L+ ++ AEV + G +LV +G ++ + ++G ++A D+
Sbjct: 61 TRIQALQEMLEHAEVGETPADDGIVEPGMVVTALV---AGREQKF-LLGSRDAGGDLGIQ 116
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
+ S +P+ A+IG + GD +S AP G EIL
Sbjct: 117 VFSAQAPLGAAVIGHKAGDKLSFEAPTGRMIDVEILD 153
>gi|15618651|ref|NP_224937.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila pneumoniae CWL029]
gi|15836273|ref|NP_300797.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila pneumoniae J138]
gi|16752300|ref|NP_444557.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila pneumoniae AR39]
gi|33242100|ref|NP_877041.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila pneumoniae TW-183]
gi|7531133|sp|Q9Z7G4|GREA_CHLPN RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|4377048|gb|AAD18880.1| Transcription Elongation Factor [Chlamydophila pneumoniae CWL029]
gi|7188943|gb|AAF37901.1| transcription elongation protein, GreA/GreB family [Chlamydophila
pneumoniae AR39]
gi|8979113|dbj|BAA98948.1| transcription elongation factor [Chlamydophila pneumoniae J138]
gi|33236610|gb|AAP98698.1| GreA [Chlamydophila pneumoniae TW-183]
Length = 722
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 82/149 (55%), Gaps = 5/149 (3%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
TS+ F +++ +L+ +E K I +AR+ GDL EN+EY+ A E + + + L
Sbjct: 571 TSESFSRMKAKLQSLVGKEMVDNAKEIEDARSLGDLRENSEYKFALEKRARLQEEIRVLS 630
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I RA ++ + D++ G V+L ++G+ Y I+G +AD S ++S+ S +A
Sbjct: 631 EEINRARILTKDLVFTDKVGVGCKVTLK-GDAGEVVEYTILGPWDADPDSCILSLQSKLA 689
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156
+ ++GK+L D++ + K Y+I ++
Sbjct: 690 QNMLGKKLNDVVILQG----KEYKISRIQ 714
>gi|269302530|gb|ACZ32630.1| transcription elongation factor GreA [Chlamydophila pneumoniae
LPCoLN]
Length = 722
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 82/149 (55%), Gaps = 5/149 (3%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
TS+ F +++ +L+ +E K I +AR+ GDL EN+EY+ A E + + + L
Sbjct: 571 TSESFSRMKAKLQSLVGKEMVDNAKEIEDARSLGDLRENSEYKFALEKRARLQEEIRVLS 630
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I RA ++ + D++ G V+L ++G+ Y I+G +AD S ++S+ S +A
Sbjct: 631 EEINRARILTKDLVFTDKVGVGCKVTLK-GDAGEVVEYTILGPWDADPDSCILSLQSKLA 689
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156
+ ++GK+L D++ + K Y+I ++
Sbjct: 690 QNMLGKKLNDVVILQG----KEYKISRIQ 714
>gi|171920968|ref|ZP_02932102.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 13 str. ATCC 33698]
gi|185179173|ref|ZP_02555812.2| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188024325|ref|ZP_02570283.2| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188518634|ref|ZP_02557002.2| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|188524482|ref|ZP_02558390.2| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|195867660|ref|ZP_03079662.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|198273725|ref|ZP_03206260.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|225551554|ref|ZP_03772500.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
gi|171902992|gb|EDT49281.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 13 str. ATCC 33698]
gi|184208908|gb|EDU05951.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188019005|gb|EDU57045.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188997849|gb|EDU66946.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|195659661|gb|EDX53041.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|195660717|gb|EDX53972.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|198249753|gb|EDY74534.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|225379369|gb|EEH01734.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
Length = 156
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 73/134 (54%)
Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
+ P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S
Sbjct: 22 LDVKWPAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVMRS 81
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
D ++ G+T+ + K+ +VG ++D + +S+ +P+ +A++ ++ G ++V+
Sbjct: 82 TDEVSIGSTIEIYNYQKDHKEVITLVGSMDSDPFANKISMDTPLGKAVVKQKEGSEVTVH 141
Query: 143 APGGEKTYEILQVL 156
+I++++
Sbjct: 142 TLASPYKVKIIKII 155
>gi|153004515|ref|YP_001378840.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
gi|152028088|gb|ABS25856.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
Length = 168
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT +G ++QEL + R + ARA E R A
Sbjct: 30 YVTPEGQAALRQELEALRD-ARAEAARLPEHARA--------------ARLAELERRAAL 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E + V+ + ++ FG V + +++ G ++IVG EAD + G+VS+ SP
Sbjct: 75 VEGTLAALTVLGPESALEGKVGFGTWVVVEDED-GRALTWRIVGPDEADPRRGMVSVHSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ARAL+G E GD + V P G + Y +++V
Sbjct: 134 VARALLGHEAGDDVEVELPAGRRGYSVIEVR 164
>gi|50955274|ref|YP_062562.1| transcription elongation factor [Leifsonia xyli subsp. xyli str.
CTCB07]
gi|50951756|gb|AAT89457.1| transcription elongation factor [Leifsonia xyli subsp. xyli str.
CTCB07]
Length = 163
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 5/152 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +D++ EL R I K I AR GDL EN Y AAK+ Q E R+ +L
Sbjct: 10 LTQDAYDRLAAELEELSVNGRAEIAKRIEAAREEGDLKENGGYHAAKDEQGKIEARIVQL 69
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISSP 125
++ A V + S + G V+ +GD+ + I + A + + S SP
Sbjct: 70 TALLRSATVG-AAPESHGIVEPGTVVT--ATIAGDESAFLIGNREIATGTELPVYSEQSP 126
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+ A++G ++GD AP G + I +V
Sbjct: 127 LGAAILGLKIGDTTEYTAPNGRQIAVRITKVE 158
>gi|225550671|ref|ZP_03771620.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
gi|225379825|gb|EEH02187.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
Length = 156
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 73/134 (54%)
Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
+ P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S
Sbjct: 22 LDVKWPAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVMRS 81
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
D ++ G+T+ + K+ +VG ++D + +S+ +P+ +A++ ++ G ++V+
Sbjct: 82 TDEVSIGSTIEIYNYQKDRKEVITLVGSMDSDPFANKISMDTPLGKAVVKQKEGSEVTVH 141
Query: 143 APGGEKTYEILQVL 156
+I++++
Sbjct: 142 TLASPYKVKIIKII 155
>gi|300781602|ref|ZP_07091456.1| transcription elongation factor GreA [Corynebacterium genitalium
ATCC 33030]
gi|300533309|gb|EFK54370.1| transcription elongation factor GreA [Corynebacterium genitalium
ATCC 33030]
Length = 174
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 8/158 (5%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M D + +T + K++ EL+ RP I I+E R GDL ENA Y AA+E Q+
Sbjct: 1 MADSQQQYITPEMKAKLEAELQQLID-NRPAIAAEINERREEGDLKENAGYDAAREQQDQ 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS- 117
E R+ ++ ++ + + G + + DK+ + I G + A +
Sbjct: 60 EEARIKQISELLANSTTERTGVVEGMAVVGSVVHVYYNGDENDKETFLI-GTRAASTDNK 118
Query: 118 --GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEI 152
S SP+ A++G G+ + AP G E + I
Sbjct: 119 DLETYSEQSPLGAAVLGATEGETRTYTAPNGREISVTI 156
>gi|197122163|ref|YP_002134114.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
gi|196172012|gb|ACG72985.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
Length = 169
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 16/151 (10%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT +G +++ L + GD + + + L + R+A
Sbjct: 30 YVTPEGQAALREALARLR--------------ADRGDAARLPDAERPARL-GELDARIAA 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + V+ ++ FG V++ E+ G + +++VG EAD + GL+S SP
Sbjct: 75 LDATLGALTVLGPEATPEGQVGFGTWVTV-EEEDGRRVTWRLVGPDEADARRGLISAGSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ARAL+G+ GD++ VN PGGE ++ V
Sbjct: 134 VARALLGRRAGDVVEVNRPGGEAELTVVAVR 164
>gi|297538325|ref|YP_003674094.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
gi|297257672|gb|ADI29517.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
Length = 165
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 15/152 (9%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT G ++Q + +Q+++ L + + A ++ +
Sbjct: 29 YVTPFGLAQLQTQATALEQQQQA--------------LLPSKDDPATQQTLAPLRRDLRY 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + +ID +T D + FGATV++ ++ G+ + IVG+ EAD+ VS SP
Sbjct: 75 LETRLENVILIDPTTQPKDTVLFGATVNVEDEE-GNPHQFTIVGEDEADIALNKVSWVSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+ALIG ++G+ +S P G EIL + +
Sbjct: 134 IAKALIGHKVGETVSWQRPAGNLNLEILAINY 165
>gi|297566645|ref|YP_003685617.1| GreA/GreB family elongation factor [Meiothermus silvanus DSM 9946]
gi|296851094|gb|ADH64109.1| GreA/GreB family elongation factor [Meiothermus silvanus DSM 9946]
Length = 158
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 41/159 (25%), Positives = 83/159 (52%), Gaps = 5/159 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M +I +T G++++++EL ++ + + E D +++ + AK + E
Sbjct: 1 MAREIRLTRDGYERLKRELEQ-ERARLQDATRILQELMESSDDYDDSGLEDAKREKARIE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGL 119
R+ LE+ ++RA VI+ + G + GA V+L + G++ Q+V EA V
Sbjct: 60 ARIDSLEDTLSRAVVIEGAQEKG-VVTLGAIVTLKAREGKGEQMEVQVVAPAEASVLENP 118
Query: 120 --VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +AL+G++LG+ + + P G + +E++ V
Sbjct: 119 MKISDESPMGKALLGRKLGETVHLETPKGHREFEVISVR 157
>gi|209554023|ref|YP_002284702.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
gi|238058241|sp|B5ZBB2|GREA_UREU1 RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|209541524|gb|ACI59753.1| transcription elongation factor GreA [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
Length = 156
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 73/134 (54%)
Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
+ P I K + +AR GDLSENA+Y AAK Q + R E+E I+ E+I+ S
Sbjct: 22 LDVKWPAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVMRS 81
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
D ++ G+T+ + K+ +VG ++D + +S+ +P+ +A++ ++ G ++V+
Sbjct: 82 TDEVSIGSTIEIYNYQKDHKEVITLVGSMDSDPFANKISMDTPLGKAVVKQKEGSEVTVH 141
Query: 143 APGGEKTYEILQVL 156
+I++++
Sbjct: 142 TLALPYKVKIIKII 155
>gi|149197307|ref|ZP_01874359.1| transcript cleavage factor/unknown domain fusion protein
[Lentisphaera araneosa HTCC2155]
gi|149139853|gb|EDM28254.1| transcript cleavage factor/unknown domain fusion protein
[Lentisphaera araneosa HTCC2155]
Length = 693
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
+ + + +Q+E E P KAI+ AR +GDL EN E++AAK+ Q + R+ EL+
Sbjct: 537 SQRSYKALQEEHERLVNTEIPDNSKAIAAAREHGDLRENFEFRAAKDRQKYLQLRVGELD 596
Query: 68 NIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
++ + D S +R+ A V++ + + Y IVG + D +S +P+
Sbjct: 597 AMLNKIGPTDFSEFKVKNRVIPAAKVTIKSPEA--ETTYSIVGMLDGDPDKNWLSFETPL 654
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
A++++G ++GD S+ PGG+ EIL V
Sbjct: 655 AKSMLGHQVGD--SIELPGGD-EAEILAVE 681
>gi|227832751|ref|YP_002834458.1| Transcription elongation factor [Corynebacterium aurimucosum ATCC
700975]
gi|262182759|ref|ZP_06042180.1| transcription elongation factor GreA [Corynebacterium aurimucosum
ATCC 700975]
gi|227453767|gb|ACP32520.1| Transcription elongation factor [Corynebacterium aurimucosum ATCC
700975]
Length = 173
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 5/151 (3%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + K +T + K++ EL+ RP + I+E R GDL ENA Y AA+E+Q+
Sbjct: 1 MAEQQKQYITPETKAKLEAELQALIDH-RPVVAAEINERREEGDLKENAGYDAAREMQDQ 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ ++ ++ + + G + D++ + I A
Sbjct: 60 EEARIKQISEVLANSTTERTAVQEGVAHIGSVVHVYYNGDEEDRETFLIGTRAAASDNKD 119
Query: 119 L--VSISSPIARALIGKELGDIISVNAPGGE 147
L S SP+ AL+G G+ AP G+
Sbjct: 120 LETYSEQSPLGAALLGAAEGETREYTAPNGK 150
>gi|328948722|ref|YP_004366059.1| Transcription elongation factor, GreA/GreB, N-terminal protein
[Treponema succinifaciens DSM 2489]
gi|328449046|gb|AEB14762.1| Transcription elongation factor, GreA/GreB, N-terminal protein
[Treponema succinifaciens DSM 2489]
Length = 914
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 73/137 (53%)
Query: 20 RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIS 79
++ + P++ I EA+ GDL ENAEY AAKE Q+ ++++L+ ++RA V D +
Sbjct: 774 EDIEKVQLPKVAAEIGEAKEKGDLKENAEYIAAKEAQHRLNVQLSKLKEELSRAVVFDPT 833
Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
T + ++FG V+L ++ Y I+G E++V G++S SP+ L+ + G+
Sbjct: 834 TATTSLVSFGTKVTLHNNLENNEVVYTILGPWESNVDEGIISYLSPLGNNLLDMKNGEQR 893
Query: 140 SVNAPGGEKTYEILQVL 156
+ + Y + +
Sbjct: 894 AFTINDHKYDYTVKSIE 910
>gi|182412163|ref|YP_001817229.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
gi|177839377|gb|ACB73629.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
Length = 166
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++ +EL + ERP + A ++ AK + R
Sbjct: 28 KRYLTEAGAERLHEELNRLRTVERPALAGAAAD-------------LDAKRELRKLDERA 74
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
EL+ I+ AE+I + FGA V++ E++ G Y+IVG E + +G +S
Sbjct: 75 RELQQILATAEIISSPAPDRSIVRFGAKVTVKEED-GTTSTYRIVGIDETEFYTGGISFQ 133
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+A+AL+G +GD I +P G + EI +
Sbjct: 134 SPLAQALLGASVGDRIQFQSPAGPRQLEIQLIE 166
>gi|284449158|dbj|BAI67350.1| transcription elongation factor [Lactobacillus fermentum]
Length = 303
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 9/139 (6%)
Query: 1 MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
++ KI +T G+ I++++ +Q +RP +I + AR GDLSEN EY AK
Sbjct: 11 IMAKIYYQEMTPAGYRAIEEQIEALKQ-KRPTLIARLKAARVLGDLSENTEYSTAKRELR 69
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD---QEAD 114
E + L+ +T A+VID+S ++A G V++ + ++ YQIVG ++A
Sbjct: 70 HLESCLRYLDKQLTYAKVIDVS--DDGKVALGKVVTIRFLDDQEEATYQIVGRYQAEQAS 127
Query: 115 VQSGLVSISSPIARALIGK 133
+ +++ SP+ AL GK
Sbjct: 128 LTEEVLAFDSPLGLALKGK 146
>gi|196232168|ref|ZP_03131023.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
gi|196223890|gb|EDY18405.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
Length = 169
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 15/150 (10%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T G +++Q+EL A L E E + +++ RM L
Sbjct: 32 MTVDGAERLQKELAVL--------------ADQKAQLEETGEGEISRDELRRVTSRMQAL 77
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ AEVI IS GD + FG V++ + G + Y+IVG E D+++G +S SP+
Sbjct: 78 SQRLADAEVIAISESRGDEVRFGMFVTIRDAG-GVEDEYRIVGVDEVDLEAGWISWLSPL 136
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
A+A++G+++GD++ AP GEK I+ V
Sbjct: 137 AQAIVGRKIGDVVQFQAPAGEKKLHIVAVR 166
>gi|281356514|ref|ZP_06243006.1| GreA/GreB family elongation factor [Victivallis vadensis ATCC
BAA-548]
gi|281317206|gb|EFB01228.1| GreA/GreB family elongation factor [Victivallis vadensis ATCC
BAA-548]
Length = 698
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 40/146 (27%), Positives = 77/146 (52%), Gaps = 6/146 (4%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
++ EL + P +A+ ARA+GD EN+E+ AAKE +N R ELE +T
Sbjct: 546 HKRLMAELDDIINVQVPENREALKVARAHGDFRENSEFDAAKERRNFLSRRRGELERELT 605
Query: 72 RAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
R + I + ++ D G+ + L + +G+K+ YQ++G + D + +S + + +A+
Sbjct: 606 RIQPISLKSVRVEDSAVIGSEIELQD-ENGEKEVYQLLGAWDGDPERRFLSYRTRLGKAV 664
Query: 131 IGKELGDIISVNAPGGEKTYEILQVL 156
+ +++G S G + Y+++ V
Sbjct: 665 LNRKVGSEFS----DGSRQYKLIAVR 686
>gi|259506992|ref|ZP_05749892.1| transcription elongation factor GreA [Corynebacterium efficiens
YS-314]
gi|259165444|gb|EEW49998.1| transcription elongation factor GreA [Corynebacterium efficiens
YS-314]
Length = 174
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 4/156 (2%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
DK +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+ E
Sbjct: 4 ADKQYITPEMKAKLEEELNTLIA-RRPIVAAEINERREEGDLKENAGYDAAREMQDQEEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119
R+ ++ ++ A + G + + DK+ + I A +
Sbjct: 63 RIKQISEVLANATTEREGIVEGVANVGSVVHVYYDGDESDKETFLIGTRAAATDNPDLET 122
Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
S SP+ A++G G+ P G + I+
Sbjct: 123 YSEQSPLGAAILGAHEGETREYTTPNGSAVSVTIVS 158
>gi|289525679|emb|CBJ15160.1| Transcription elongation factor [Chlamydia trachomatis Sweden2]
Length = 715
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 5/154 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ + TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + +
Sbjct: 563 NILWTTSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFASERRARLQEE 622
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L I RA+++ + D + G + L E + GDK Y I+G +A+ ++S+
Sbjct: 623 IRVLSEEINRAKILTKDAVFTDSVGVGCKIVL-ESDQGDKVCYTILGPWDANPDEKILSL 681
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S +A+ ++GK +G+ + G+K +I ++
Sbjct: 682 KSKLAQEMVGKAVGETVLFQ---GKKH-KIKEIS 711
>gi|15834629|ref|NP_296388.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydia muridarum Nigg]
gi|270284795|ref|ZP_06194189.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydia muridarum Nigg]
gi|270288825|ref|ZP_06195127.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydia muridarum Weiss]
gi|301336175|ref|ZP_07224377.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
muridarum MopnTet14]
gi|14194799|sp|Q9PLU1|GREA_CHLMU RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|7190045|gb|AAF38898.1| transcription elongation protein, GreA/GreB family [Chlamydia
muridarum Nigg]
Length = 714
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/154 (26%), Positives = 82/154 (53%), Gaps = 5/154 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ + TS+ F +++ +L+ +E K I +ARA GDL EN+EY+ A E + +
Sbjct: 562 NILWTTSESFTRMKAKLQSLIGKEMVDNAKEIEDARALGDLRENSEYKFALERRARLQEE 621
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L I RA+++ + + + G V L + G++ Y I+G +A+ + ++S+
Sbjct: 622 IRVLSEEINRAKILTKDAVFTNSVGVGCKVVLED-EQGEEDCYTILGPWDANPEEKILSL 680
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S +A+ ++GK +G+ + G+K +I Q+
Sbjct: 681 KSKLAQEMVGKTVGESVLFQ---GKKH-KIKQIS 710
>gi|255507239|ref|ZP_05382878.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis D(s)2923]
gi|296435247|gb|ADH17425.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis E/150]
gi|296438966|gb|ADH21119.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis E/11023]
Length = 715
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 81/154 (52%), Gaps = 5/154 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ + TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + +
Sbjct: 563 NILWTTSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFASERRARLQEE 622
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L I RA+++ + D + G + L E + GDK Y I+G +A+ ++S+
Sbjct: 623 IRVLSEEINRAKILTKDAVFTDSVGVGCKIVL-ESDQGDKVCYTILGPWDANPDEKILSL 681
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S +A+ ++GK +G+ + G+K +I ++
Sbjct: 682 KSKLAQEMVGKAVGETVLFQ---GKKH-KIKEIS 711
>gi|300858139|ref|YP_003783122.1| transcription elongation factor [Corynebacterium pseudotuberculosis
FRC41]
gi|300685593|gb|ADK28515.1| Transcription elongation factor [Corynebacterium pseudotuberculosis
FRC41]
gi|302205860|gb|ADL10202.1| transcription elongation factor GreA [Corynebacterium
pseudotuberculosis C231]
gi|302330418|gb|ADL20612.1| transcription elongation factor GreA [Corynebacterium
pseudotuberculosis 1002]
gi|308276095|gb|ADO25994.1| transcription elongation factor GreA [Corynebacterium
pseudotuberculosis I19]
Length = 173
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 6/158 (3%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + K +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+
Sbjct: 1 MAENQKQYITPETKAKLEEELNALIAH-RPEVAAEINERREEGDLKENAGYDAAREMQDQ 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ ++ I+ + + + G + DK+ + I A
Sbjct: 60 EEARIKQISEILANSTTERVGIVEGVAHIGSVVHVYYNGDKNDKETFLIGTRAAASDNKD 119
Query: 119 L--VSISSPIARALIGKELGDIISVNAPGGE-KTYEIL 153
L S SP+ A+IG + G+ AP G+ T ++
Sbjct: 120 LETFSEQSPLGAAVIGAKEGETREYTAPNGKTITVTVV 157
>gi|15807365|ref|NP_296096.1| transcription elongation factor [Deinococcus radiodurans R1]
gi|6460189|gb|AAF11920.1|AE002068_3 transcription elongation factor [Deinococcus radiodurans R1]
Length = 183
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 79/163 (48%), Gaps = 11/163 (6%)
Query: 1 MVDKIPVTSKGFDKIQQELRWR--QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M +P+T +G ++Q L ++EE R+++ EA +E+ + AA+E
Sbjct: 24 MTQPLPLTPEGLSRLQAALEREQARREEARRVVQEQMEANE----NESLDLAAAQETLGA 79
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ ELE+ + RA V+ + R A G+ V+L+ G + +V EA G
Sbjct: 80 VEARIEELEDQLARAVVLAPGAGNDGRAAVGSRVTLLNIGLGRELPLHLVSAAEAAAGPG 139
Query: 119 -----LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
LVS SP+ RAL+G+ G+ +V+ + Y +L V
Sbjct: 140 TSGVALVSTESPVGRALLGRRAGEEFTVDLGRTQAQYRVLMVE 182
>gi|220916942|ref|YP_002492246.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-1]
gi|219954796|gb|ACL65180.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-1]
Length = 168
Score = 102 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 16/151 (10%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT +G +++ L + E D + + + A L + R+A
Sbjct: 30 YVTPEGQAALREALARLRAER--------------ADAARLPDAERAPRL-ADLDARIAA 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + V+ ++ FG V++ E+ G + +++VG EAD + GL+S SP
Sbjct: 75 LDATLGALTVLGPEATPEGQVGFGTWVTV-EEEDGRRVTWRLVGPDEADARRGLISAGSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ARAL+G+ G+++ V+ PGGE ++ V
Sbjct: 134 VARALLGRRAGEVVEVHRPGGEAELTVVAVR 164
>gi|255324383|ref|ZP_05365500.1| transcription elongation factor GreA [Corynebacterium
tuberculostearicum SK141]
gi|311740763|ref|ZP_07714590.1| transcription elongation factor GreA [Corynebacterium
pseudogenitalium ATCC 33035]
gi|255298289|gb|EET77589.1| transcription elongation factor GreA [Corynebacterium
tuberculostearicum SK141]
gi|311304283|gb|EFQ80359.1| transcription elongation factor GreA [Corynebacterium
pseudogenitalium ATCC 33035]
Length = 173
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + K +T + K++ EL+ RP + I+E R GDL ENA Y AA+E+Q+
Sbjct: 1 MAEQQKQYITPETKAKLEAELQELIDH-RPVVAAEINERREEGDLKENAGYDAAREMQDQ 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ ++ ++ A + G + DK+ + I A
Sbjct: 60 EEARIKQISEVLANATTERGAVQEGVAHTGSVVHVYYNGDKDDKETFLIGTRAAASDNKD 119
Query: 119 L--VSISSPIARALIGKELGDIISVNAPGGE 147
L S SP+ A++G + G+ AP G+
Sbjct: 120 LETYSEQSPLGAAILGAQEGETREYTAPNGK 150
>gi|166153977|ref|YP_001654095.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis 434/Bu]
gi|166154852|ref|YP_001653107.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis L2b/UCH-1/proctitis]
gi|301335174|ref|ZP_07223418.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis L2tet1]
gi|165929965|emb|CAP03448.1| Transcription elongation factor [Chlamydia trachomatis 434/Bu]
gi|165930840|emb|CAP06402.1| Transcription elongation factor [Chlamydia trachomatis
L2b/UCH-1/proctitis]
Length = 715
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 44/149 (29%), Positives = 79/149 (53%), Gaps = 5/149 (3%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + + + L
Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFASERRARLQEEIRVLS 627
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
I RA+++ + D + G V L E + GDK Y I+G +A+ ++S+ S +A
Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKVVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156
+ ++GK +G+ + G+K +I ++
Sbjct: 687 QEMVGKAVGETVLFQ---GKKH-KIKEIS 711
>gi|86158541|ref|YP_465326.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-C]
gi|85775052|gb|ABC81889.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-C]
Length = 168
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 16/151 (10%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT +G +++ L + E D + + + A L + R+A
Sbjct: 30 YVTPEGQAALREALARLRAER--------------ADAARLPDAERAPRL-ADLDARVAA 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + V+ ++ FG V++ E+ G + +++VG EAD + GL+S SP
Sbjct: 75 LDATLGALTVLGPEATPEGQVGFGTWVTV-EEEDGRRVTWRLVGPDEADARRGLISAGSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ARAL+G+ GD++ V+ PGGE ++ V
Sbjct: 134 VARALLGRRAGDVVEVHRPGGEAELTVVAVR 164
>gi|330881018|gb|EGH15167.1| transcription elongation factor GreB [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 119
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T G + +++EL + +E RP I + ++ A + GD SENA+YQ K+L +
Sbjct: 1 MSTKI-ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ L + V+ S R+ FGA V + +GD K ++IVG E ++ +
Sbjct: 60 RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIEN-EAGDLKKFRIVGYDEIYGRNDYI 118
Query: 121 S 121
S
Sbjct: 119 S 119
>gi|282889896|ref|ZP_06298434.1| hypothetical protein pah_c005o031 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281500219|gb|EFB42500.1| hypothetical protein pah_c005o031 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 731
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ I T +G+ + Q+ +R E + I AR+ GDL EN+EY+ A E ++ +G
Sbjct: 578 NTIWTTEEGYLQTQERIRQIGTTEVVENAREIEAARSLGDLRENSEYKFALEKRSRLQGE 637
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + RA +I + ++++ G+ V L + + Y I+G +AD + ++S
Sbjct: 638 LKRLSEQLNRARIITKDDIYLNQVSVGSIVELEDPE-KNVVTYTILGPWDADADTNILSF 696
Query: 123 SSPIARALIGKELGDIISVN 142
S A A++G+++G+
Sbjct: 697 QSKFAEAMLGRKVGEEFEFR 716
>gi|320335054|ref|YP_004171765.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
21211]
gi|319756343|gb|ADV68100.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
21211]
Length = 160
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 9/163 (5%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQ--EERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M I +T +GF+++Q+ L ++ EE RI++ EA A +E+ + AK +
Sbjct: 1 MARDIKLTREGFERLQRTLDHERERLEEATRILQEQMEASA---DNEDTGLEDAKREKMS 57
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ +LE+ + RA +I+ + +A GA V L + + QIV EA V G
Sbjct: 58 IEARIDDLEDTLARATLIEDHSEDAGHVALGAIVVLHNEATKKDMRVQIVSAPEASVLGG 117
Query: 119 ---LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+S SP+ L+G++ G+ VN G++ Y++ V +
Sbjct: 118 SLPKISDDSPVGTQLLGRKTGESFVVNLENGKQVKYKVKNVEY 160
>gi|15605367|ref|NP_220153.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis D/UW-3/CX]
gi|76789375|ref|YP_328461.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydia trachomatis A/HAR-13]
gi|237803065|ref|YP_002888259.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis B/Jali20/OT]
gi|255311460|ref|ZP_05354030.1| Transcription elongation factor [Chlamydia trachomatis 6276]
gi|255317761|ref|ZP_05359007.1| Transcription elongation factor [Chlamydia trachomatis 6276s]
gi|255349021|ref|ZP_05381028.1| Transcription elongation factor [Chlamydia trachomatis 70]
gi|255503560|ref|ZP_05381950.1| Transcription elongation factor [Chlamydia trachomatis 70s]
gi|7531128|sp|O84641|GREA_CHLTR RecName: Full=Transcription elongation factor greA; AltName:
Full=Transcript cleavage factor greA
gi|3329084|gb|AAC68240.1| Transcription Elongation Factor G [Chlamydia trachomatis D/UW-3/CX]
gi|76167905|gb|AAX50913.1| GreA [Chlamydia trachomatis A/HAR-13]
gi|231274299|emb|CAX11094.1| Transcription elongation factor [Chlamydia trachomatis B/Jali20/OT]
gi|296436174|gb|ADH18348.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis G/9768]
gi|296437102|gb|ADH19272.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis G/11222]
gi|296438034|gb|ADH20195.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis G/11074]
gi|297140536|gb|ADH97294.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis G/9301]
gi|297748766|gb|ADI51312.1| GreA [Chlamydia trachomatis D-EC]
gi|297749646|gb|ADI52324.1| GreA [Chlamydia trachomatis D-LC]
Length = 715
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 5/154 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ + TS F +++ +L+ +E K I +ARA GDL EN+EY+ A E + +
Sbjct: 563 NILWTTSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKIALERRARLQEE 622
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L I RA+++ + D + G V L E + GDK Y I+G +A+ ++S+
Sbjct: 623 IHVLSEEINRAKILTKDAVFTDSVGVGCKVVL-ESDQGDKVCYTILGPWDANPDEKILSL 681
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S +A+ ++GK +G+ + G+K +I ++
Sbjct: 682 KSKLAQEMVGKAVGETVLFQ---GKKH-KIKEIS 711
>gi|38233521|ref|NP_939288.1| transcription elongation factor GreA [Corynebacterium diphtheriae
NCTC 13129]
gi|38199781|emb|CAE49444.1| transcription elongation factor [Corynebacterium diphtheriae]
Length = 173
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 6/159 (3%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M D K +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+
Sbjct: 1 MADNQKQYITPETKAKLEEELNALIAH-RPVVAAEINERREEGDLKENAGYDAAREMQDQ 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ ++ I+ + + G + DK+ + I A
Sbjct: 60 EEARIKQISEILANSTTERAGIVEGVAHIGSVVHVYYNGDKNDKETFLIGTRAAASDNKD 119
Query: 119 L--VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
L S SP+ A++G + G+ +AP G + I+
Sbjct: 120 LETYSEQSPLGAAVVGAQEGETRQYSAPNGNTISVTIVS 158
>gi|94985913|ref|YP_605277.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM
11300]
gi|94556194|gb|ABF46108.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM
11300]
Length = 158
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 10/161 (6%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS---ENAEYQAAKELQN 57
M ++IP+T++G+ ++Q+ L +ER R+ A + A D + E+ +QAA+
Sbjct: 1 MAEEIPMTAEGYRRLQETLE----KERQRLEDATTSMAATLDDAMDLEDRSFQAAQYDLP 56
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
E R+ ELE+++ RA +++ +A G+ V L ++ + Q+V E D +
Sbjct: 57 TMEARILELEDVLARAVIVEEPQARDGGVALGSVVVLRDEQHDRELRVQLVSAVEVDALA 116
Query: 118 G---LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
VS SP+ +AL+G+ G+ V+ Y + +
Sbjct: 117 EGATQVSEDSPVGKALLGRRAGESFEVDLGSSRARYTVKSI 157
>gi|227501557|ref|ZP_03931606.1| transcription elongation factor GreA [Corynebacterium accolens ATCC
49725]
gi|306835715|ref|ZP_07468721.1| transcription elongation factor GreA [Corynebacterium accolens ATCC
49726]
gi|227077582|gb|EEI15545.1| transcription elongation factor GreA [Corynebacterium accolens ATCC
49725]
gi|304568433|gb|EFM43992.1| transcription elongation factor GreA [Corynebacterium accolens ATCC
49726]
Length = 173
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 5/151 (3%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + K +T + K++ EL+ RP + I+E R GDL ENA Y AA+E+Q+
Sbjct: 1 MAEQQKQYITPETKAKLETELQELIDH-RPEVAAEINERREEGDLKENAGYDAAREMQDQ 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ ++ ++ + + G N DK+ + I A
Sbjct: 60 EEARIKQISELLANSTTERGTMQEGVAYTGSVVHVYYNGNKDDKETFLIGTRAAATDNKD 119
Query: 119 L--VSISSPIARALIGKELGDIISVNAPGGE 147
L S SP+ A+IG + G+ +AP G+
Sbjct: 120 LETYSEQSPLGAAIIGAQEGETREYSAPNGK 150
>gi|15895237|ref|NP_348586.1| transcription elongation factor GreA [Clostridium acetobutylicum
ATCC 824]
gi|15024946|gb|AAK79926.1|AE007701_3 Transcription elongation factor GreA [Clostridium acetobutylicum
ATCC 824]
gi|325509383|gb|ADZ21019.1| Transcription elongation factor GreA [Clostridium acetobutylicum EA
2018]
Length = 158
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +DK+++E +R +R I K EA A+GD SENAEY+AAKE N R+ ++
Sbjct: 5 LTKSDYDKLKEEYEYRNTVKRHEIAKKKMEAAAFGDRSENAEYKAAKEEYYHNNRRLGQI 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA---DVQSGLVSIS 123
++ A +++ + D + G+ + L + + ++V D +S+
Sbjct: 65 SRLLKNAIIVEEDKID-DEVNIGSEMLLK-IGADETFKAKLVTTLNISVEDEDIEYISVD 122
Query: 124 SPIARALIGKELGDIISVNAPG 145
SP +AL K +GD I VN P
Sbjct: 123 SPFGKALYKKHVGDSIDVNLPD 144
>gi|229918722|ref|YP_002887368.1| GreA/GreB family elongation factor [Exiguobacterium sp. AT1b]
gi|229470151|gb|ACQ71923.1| GreA/GreB family elongation factor [Exiguobacterium sp. AT1b]
Length = 152
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G ++ L ++ ER + + AR + D E+ Y A E +
Sbjct: 2 KPKLTETGHHQLTDRLVMLRR-ERTDARERLRTARKFCDFREDVTYTEAVRQYERIEADI 60
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
EL +++ A +++ ++ + + FG V + E + + Y+IV + EAD++ G +S++
Sbjct: 61 LELNHLLDDATIVE--SVQSEVVTFGNRVVIREVQQEETERYRIVSEAEADLERGSISVT 118
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ R L+G +G I V PGG E+L +
Sbjct: 119 SPLGRRLMGATMGQTIQVETPGGTIQVEVLHIE 151
>gi|146294887|ref|YP_001185311.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32]
gi|145566577|gb|ABP77512.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32]
Length = 114
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
+ + R+ L + +++D S +I FGA L ++G++ Y+IVG E D
Sbjct: 1 MLRQIDSRVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELEN-DAGERVRYRIVGKDELD 59
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ G ++I SP+ARALIGK++ D + V P G K + I ++ +
Sbjct: 60 TKLGYITIDSPMARALIGKQVDDEVVVQTPSGPKEWYINEIRY 102
>gi|330444026|ref|YP_004377012.1| transcription elongation factor greA [Chlamydophila pecorum E58]
gi|328807136|gb|AEB41309.1| Transcription elongation factor greA [Chlamydophila pecorum E58]
Length = 721
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 81/154 (52%), Gaps = 6/154 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D VTS+ F +++++L+ +E + I +ARA GDL EN+EY+ A E + +
Sbjct: 569 DVFWVTSQSFSRMKEKLQSLVGKEMVDNAREIEDARALGDLRENSEYKFALERRARLQEE 628
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L I +A+++ + + ++ G V+L + Y ++G +AD + ++S+
Sbjct: 629 IRVLSEEINKAKILTKADVHTHKVGVGCRVTLEDAQG--SIEYTLLGSWDADSEKNILSL 686
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S +A+ L+GK + + + + + Y I +++
Sbjct: 687 QSKLAQMLLGKNIDERVQLQG----REYRIAKIV 716
>gi|237804986|ref|YP_002889140.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
trachomatis B/TZ1A828/OT]
gi|231273286|emb|CAX10201.1| Transcription elongation factor [Chlamydia trachomatis
B/TZ1A828/OT]
Length = 715
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 43/154 (27%), Positives = 80/154 (51%), Gaps = 5/154 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+ + TS F +++ +L+ +E K I +AR GDL EN+EY+ A E + +
Sbjct: 563 NILWTTSDSFTRMKNKLQSLVGKEMVENAKEIEDARVLGDLRENSEYKIALERRARLQEE 622
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L I RA+++ + D + G V L E + GDK Y I+G +A+ ++S+
Sbjct: 623 IHVLSEEINRAKILTKDAVFTDSVGVGCKVVL-ESDQGDKVCYTILGPWDANPDEKILSL 681
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S +A+ ++GK +G+ + G+K +I ++
Sbjct: 682 KSKLAQEMVGKAVGETVLFQ---GKKH-KIKEIS 711
>gi|225022977|ref|ZP_03712169.1| hypothetical protein CORMATOL_03023 [Corynebacterium matruchotii
ATCC 33806]
gi|305681896|ref|ZP_07404700.1| transcription elongation factor GreA [Corynebacterium matruchotii
ATCC 14266]
gi|224944200|gb|EEG25409.1| hypothetical protein CORMATOL_03023 [Corynebacterium matruchotii
ATCC 33806]
gi|305658369|gb|EFM47872.1| transcription elongation factor GreA [Corynebacterium matruchotii
ATCC 14266]
Length = 175
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 6/159 (3%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
MV+ K +T + K+++EL RP + I+E R GDL ENA Y AA+E+Q+
Sbjct: 1 MVENQKQYITPESKAKLEEELNALIAH-RPVVAAEINERREEGDLKENAGYDAAREMQDQ 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ + I+ + + G +K+ + I A
Sbjct: 60 EEARIKHISEILANSTTERSGIIEGVAHVGSVVHVYYNGKPENKETFLIGTRAAASDNKD 119
Query: 119 L--VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
L S SP+ A++G G+ AP G+ + ++
Sbjct: 120 LETYSEQSPLGAAILGAHEGETREYTAPNGKVISVTVVS 158
>gi|253996329|ref|YP_003048393.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8]
gi|253983008|gb|ACT47866.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8]
Length = 168
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 38 RAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEK 97
L A+ AK+ E + + + A ++D + S + + FGAT+ + +
Sbjct: 48 AELNRLKLTADDTFAKDKVAEIERDLRYVRARLDSAILVDPTKQSHETVLFGATIEVED- 106
Query: 98 NSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+G + + IVG+ EAD VS SP+A++L+G+++GD ++ P G EIL + +
Sbjct: 107 GAGAQHTFHIVGEDEADASINKVSWVSPLAKSLLGQKVGDTVTWQRPAGNINLEILDIHY 166
>gi|53802404|ref|YP_112932.1| transcription elongation factor [Methylococcus capsulatus str.
Bath]
gi|53756165|gb|AAU90456.1| putative transcription elongation factor [Methylococcus capsulatus
str. Bath]
Length = 166
Score = 99.5 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 16/150 (10%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT G ++Q + E + R GD E AK+ E +
Sbjct: 29 YVTPAGLAQLQARVAELTAERQ----------RLLGD-----ESVGAKQQLRRVERELRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ + A +D + SGDR+ FGATV + + +G+ + Y IVG+ EAD G +S SP
Sbjct: 74 YDERVVSAIPVDPAARSGDRVHFGATVEVED-EAGNVQRYSIVGEDEADAAHGKISWVSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ARAL+ E GD ++ P G+K IL +
Sbjct: 133 LARALLNAEAGDTVTWKRPAGDKELHILAI 162
>gi|227534584|ref|ZP_03964633.1| transcription elongation factor [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|227187833|gb|EEI67900.1| transcription elongation factor [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
Length = 128
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 3/130 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T G ++QE+ + RP IK +++A A GD SENAEY AAK E
Sbjct: 1 MVTYHEITPTGLANLKQEVEDLKTI-RPAKIKNLADAAALGDRSENAEYSAAKRELRQLE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
GR+ L+ +I A+V + D G ++L + D+ Y++VG EA + +
Sbjct: 60 GRLRYLDKLIRYAKVTHPAA--SDIADIGNRITLKFDDDEDQATYELVGPAEAGMGQDKL 117
Query: 121 SISSPIARAL 130
+I+SP+ A+
Sbjct: 118 AINSPLGAAI 127
>gi|167949283|ref|ZP_02536357.1| transcription elongation factor GreB [Endoriftia persephone
'Hot96_1+Hot96_2']
gi|110589334|gb|ABG77176.1| transcription elongation factor [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 166
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 2/124 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+TS G ++ E + + R ++KA+S A A GD SENAEY K+ + R+
Sbjct: 38 YITSDGHQRLLAEEQGLWK-RRREVVKALSAAAAEGDRSENAEYIYRKKELREIDRRIRY 96
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I +V++ + ++ F A V+L + G Y+IVG E D Q+ +S+ SP
Sbjct: 97 LQKRIPELKVVEQPPSNRQQVFFAAWVTLED-EQGVTHRYRIVGPDEIDHQADYISMDSP 155
Query: 126 IARA 129
+
Sbjct: 156 LGAG 159
>gi|227548191|ref|ZP_03978240.1| transcription elongation factor GreA [Corynebacterium
lipophiloflavum DSM 44291]
gi|227079752|gb|EEI17715.1| transcription elongation factor GreA [Corynebacterium
lipophiloflavum DSM 44291]
Length = 174
Score = 99.1 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 6/159 (3%)
Query: 1 MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M + K +T + K++ EL+ RP I I+E R GDL ENA Y AA+E Q+
Sbjct: 1 MAETQKQYITPEMKAKLENELQALID-NRPVIAAEINERREEGDLKENAGYDAAREQQDQ 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ ++ I+ A + G + DK+ + I +
Sbjct: 60 EEARIKQISEILANATTERSGVIEGVAQVGSVVHVFYNGDESDKETFLIGTRAASTGNKD 119
Query: 119 L--VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
L S +SP+ A++G G+ + +AP G E T I+
Sbjct: 120 LETYSENSPLGAAVVGASEGETRTYSAPNGREITVTIVS 158
>gi|330811840|ref|YP_004356302.1| GreA-GreB family transcriptional regulator [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327379948|gb|AEA71298.1| Putative transcription factor, GreA-GreB family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 163
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
VT G ++Q R+ + + E A+ K+ E
Sbjct: 25 AQPNYVTPTGLAQLQA-----------RVAELQALHAQQASRGELAD----KQRIADLER 69
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ + A+V+ + S D++ G V+ V++ +++ Q+VG+ +AD SGL++
Sbjct: 70 DLRYFTQRLQSAQVV--APTSSDQVRIGHWVTFVDEQDHEQR-VQLVGEDQADAASGLIN 126
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ RAL+G ++GD ++ P G E++ +
Sbjct: 127 WGSPLGRALLGAKVGDEVTWERPLGNLAIEVVAI 160
>gi|320334564|ref|YP_004171275.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
21211]
gi|319755853|gb|ADV67610.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
21211]
Length = 160
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 4/160 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T +G++++++ L +++ R +++ E+ QAA+ +
Sbjct: 1 MTQKIQMTREGYERLERALEH-ERQRRDEATASMAAVLDDAIDLEDRSLQAAQHDFAGMD 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG---DQEADVQS 117
R+ ELE+ + RAE++D + + G+ V L + Q+V D
Sbjct: 60 ARIMELEDALVRAEIVDTVDDADGHVRIGSVVDLHDNTQNRDVRVQLVSAVETTLLDEGI 119
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
VS SP+ +AL+G++ GD +V+ +K Y + V
Sbjct: 120 THVSDDSPVGKALLGRQRGDTFTVDLGDRQKDYTVQNVEH 159
>gi|284036025|ref|YP_003385955.1| GreA/GreB family elongation factor [Spirosoma linguale DSM 74]
gi|283815318|gb|ADB37156.1| GreA/GreB family elongation factor [Spirosoma linguale DSM 74]
Length = 171
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT +G ++ E ++E A A L++ E L G++A
Sbjct: 30 YVTPRGLAMLRDEFEKLEKEH----------ALAQTQLTDENE---RTRQLALLNGQIAA 76
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD-KKNYQIVGDQEADVQSGLVSISS 124
L I A+V+++ D + FGATV+L +++G + IVG EAD G ++ +
Sbjct: 77 LNQRIATAKVVNMQDHPLDEVRFGATVTLSSQSTGKADQQLTIVGVDEADAIHGRIAFPA 136
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
PIAR L+GK++GD I++ P GE EI + +
Sbjct: 137 PIARLLLGKKVGDFITLRTPRGENALEITSIYY 169
>gi|210610359|ref|ZP_03288364.1| hypothetical protein CLONEX_00554 [Clostridium nexile DSM 1787]
gi|210152509|gb|EEA83515.1| hypothetical protein CLONEX_00554 [Clostridium nexile DSM 1787]
Length = 103
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/99 (38%), Positives = 59/99 (59%)
Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
E R+ E+E I+ AEV+ + D+I G TVSL + ++ Y+IVG EA+
Sbjct: 1 RDIEARIEEIEKILKNAEVVVEDEVDFDKINVGCTVSLYDVEFEEEVEYKIVGSTEANSL 60
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+G +S SP+ +ALIGK++GD + V A G YE+L++
Sbjct: 61 AGKISNESPLGKALIGKKVGDKVEVEAQAGIIEYEVLKI 99
>gi|255534798|ref|YP_003095169.1| Transcription elongation factor GreB [Flavobacteriaceae bacterium
3519-10]
gi|255340994|gb|ACU07107.1| Transcription elongation factor GreB [Flavobacteriaceae bacterium
3519-10]
Length = 183
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 15/152 (9%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT G + +QQE E+ D S EY+ A N R+
Sbjct: 47 WVTPAGMEALQQERADLISEQ------------EKLDPSHEREYRIA---FNHLNARLQL 91
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + A++ID + +S + FGATV+ N+ ++ +Q+VG EA++ G ++ ++P
Sbjct: 92 LNGRMASAKIIDTARLSQGEVHFGATVTFKNLNNNLRQTFQLVGVDEANISKGKLAFTTP 151
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ALI ++G+ +++ +EIL + +
Sbjct: 152 LAKALINSKVGEKVTLQLGDKTNIFEILSIGY 183
>gi|152981797|ref|YP_001351733.1| transcription elongation factor GreB [Janthinobacterium sp.
Marseille]
gi|151281874|gb|ABR90284.1| transcription elongation factor GreB [Janthinobacterium sp.
Marseille]
Length = 175
Score = 98.0 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 10/153 (6%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G+ +QQEL+ RP A D ++ A A + E R+
Sbjct: 28 YITPDGYRHLQQELQQLLDVARP--------AAMQMDAADTAMASAQEASLREIEQRIHY 79
Query: 66 LENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L+ + AEV+D S GDRI FGA+V +G+ IVG E D G +S S
Sbjct: 80 LQTRVESAEVVDASVHADGDRIFFGASVDYENT-AGETHTATIVGLDELDPAQGRISWLS 138
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
P+A++L+G E GD + + P G + +L V +
Sbjct: 139 PLAQSLLGAEEGDTVLLQTPAGPEELHVLTVRY 171
>gi|325283338|ref|YP_004255879.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP]
gi|324315147|gb|ADY26262.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP]
Length = 165
Score = 98.0 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 7/161 (4%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+I +T +G++++++ L +QE + + E SE+ + AK + E
Sbjct: 7 TKQIKLTKEGYERLEKALAQ-EQERLTEATRIVQEQMENSTDSEDTGLEDAKREKRQVEA 65
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--- 118
R+ ELE+ + RA VI+ G + GATV L + + + ++V EA V+ G
Sbjct: 66 RIEELEDTLARATVIEGGADDG-AVNLGATVVLSNETAKKEMTVKVVSAAEASVRGGDKT 124
Query: 119 -LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+S SP+ R L+G+ GD VN GG++ Y++ V +
Sbjct: 125 PRISDDSPVGRELMGRREGDAFVVNLEGGKQVKYKVKSVSY 165
>gi|149378117|ref|ZP_01895837.1| transcription elongation factor GreB [Marinobacter algicola DG893]
gi|149357602|gb|EDM46104.1| transcription elongation factor GreB [Marinobacter algicola DG893]
Length = 108
Score = 97.6 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 1/102 (0%)
Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
+ R+ L + V+D ++ FGA V++ E GD+ Y++VG E D+
Sbjct: 1 MREIDRRVRFLTKRLDELTVVDRLPDDRGKMFFGAWVTI-ESEDGDESTYRLVGPDEFDL 59
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
G +SI SP+ARAL+GK + D + V P G I + +
Sbjct: 60 SRGYLSIDSPMARALLGKRIDDEVGVRTPDGWNHVVITNIHY 101
>gi|226228266|ref|YP_002762372.1| transcription elongation factor GreA [Gemmatimonas aurantiaca T-27]
gi|226091457|dbj|BAH39902.1| transcription elongation factor GreA [Gemmatimonas aurantiaca T-27]
Length = 161
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 44/152 (28%), Positives = 81/152 (53%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+ + ++ +E+ Q E + I +A GDL EN+EY+AA E Q + R+ +L
Sbjct: 1 MFQELIAQMAREVEKLQFELNVTLPNEIRKAVELGDLKENSEYKAALERQQFVQARLGQL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+T+ IDI+ + GDR+ G+ V + + S ++ Y++V ++ G V++ SPI
Sbjct: 61 TQRVTKLANIDITQIPGDRVGLGSKVIVEDLQSKARETYELVFGDAGELHDGHVTMGSPI 120
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
RAL GK +G+ + P + +I+++ I
Sbjct: 121 GRALQGKSVGEEAILKLPTRIRKLQIVELQTI 152
>gi|84386347|ref|ZP_00989375.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
gi|84378771|gb|EAP95626.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
Length = 107
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
+ + R+ L + ++D S ++ FGA V + + G+ K ++IVG +E
Sbjct: 1 MLRQIDRRVRFLRKFLPDVTIVDYSPQQEGKVFFGAWVEIEN-DDGEMKKFRIVGPEEIY 59
Query: 115 VQ-SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
G +SI SP+ARAL+ KE+ D +V P G+K + I + +
Sbjct: 60 GDAKGYISIDSPMARALLKKEVDDEFTVTTPEGDKEWFINSIRY 103
>gi|194246641|ref|YP_002004280.1| Transcription elongation factor [Candidatus Phytoplasma mali]
gi|193806998|emb|CAP18433.1| Transcription elongation factor [Candidatus Phytoplasma mali]
Length = 162
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 6/160 (3%)
Query: 1 MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M DK +T G +++++L + R +K + EAR GDLSENA+Y AA+ Q
Sbjct: 1 MEDKKNIYELTKSGVLELKEQLHHLTEIRRIENLKILKEAREQGDLSENADYDAARNEQA 60
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
L E + +++NI+ + + I ++ + G V L KK++ +VG E D
Sbjct: 61 LIENEILKIKNILKKIK--IIKSLKNKEVNIGKLVELNFLEKNIKKSFYLVGILETDPSL 118
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
+SI P+ + + G ++GD I++ + G+ EIL+V
Sbjct: 119 NKISIDCPLGKGIRGHQVGDKITIQSETGKNFQVEILKVE 158
>gi|291295876|ref|YP_003507274.1| GreA/GreB family elongation factor [Meiothermus ruber DSM 1279]
gi|290470835|gb|ADD28254.1| GreA/GreB family elongation factor [Meiothermus ruber DSM 1279]
Length = 157
Score = 97.2 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 38/159 (23%), Positives = 79/159 (49%), Gaps = 4/159 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ +T G++++ EL ++ + + E D +++ + AK + E
Sbjct: 1 MAREVKLTKSGYERLVAELEQ-ERARLQDATRILQELMESSDDYDDSGLEDAKREKARIE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV--QSG 118
R+ L + ++RA++++ ++ GA VSL K G+ Q+V EA V +
Sbjct: 60 ARIDSLTDTLSRAQIMEEEGTKVSQVTLGAIVSLRSKE-GEIMEVQVVAPAEASVLERPM 118
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S SP+ RAL+G+++G + + P G+K ++I +
Sbjct: 119 KISDESPMGRALLGQQVGAKVLLETPKGKKEFKIESIQH 157
>gi|312963140|ref|ZP_07777625.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
gi|311282651|gb|EFQ61247.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
Length = 165
Score = 97.2 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 74/150 (49%), Gaps = 17/150 (11%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G ++Q ++ + E A E A+ K+ Q E +
Sbjct: 30 LTAQGLTQLQA-----------KVAQLQLEYSAESAKGEKAD----KQRQADLERDLRYF 74
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A+V+ +T S D++ G+ V+ +++ Q+VG+ +AD +GL++ SP+
Sbjct: 75 NQRVQSAQVVPPAT-SCDKVQIGSWVTFAN-EQDEQQRVQLVGEDQADANAGLINWGSPL 132
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
RAL+G ++GD + P G++ E+L+V
Sbjct: 133 GRALLGAQVGDEVLWKRPVGDQLIEVLRVE 162
>gi|89898809|ref|YP_515919.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila felis Fe/C-56]
gi|89332181|dbj|BAE81774.1| transcription elongation and transcript cleavage factor
[Chlamydophila felis Fe/C-56]
Length = 717
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 78/154 (50%), Gaps = 5/154 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + +
Sbjct: 564 DILWTTPESFTKMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFALEKRARLQEE 623
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + RA ++ + D++ G VSL ++ G Y I+G +AD + ++S+
Sbjct: 624 IRVLSEEVNRARILTKDVVFTDKVGVGCKVSLEDEK-GSLITYSILGPWDADPDNYILSL 682
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S +A+ ++ K +G + K Y+I ++
Sbjct: 683 KSKLAQEMLDKSVGASLQFQG----KKYKISRIQ 712
>gi|114049370|ref|YP_739920.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
gi|113890812|gb|ABI44863.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
Length = 113
Score = 96.8 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
+ R+ L + +++D S +I FGA L +G++ Y+IVG E D
Sbjct: 1 MRQIDSRVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELEN-EAGERVRYRIVGKDELDT 59
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ G ++I SP+ARALIGK++ D + V P G K + I + +
Sbjct: 60 KLGYITIDSPMARALIGKQVDDEVVVQTPSGPKEWYINDIRY 101
>gi|29839773|ref|NP_828879.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila caviae GPIC]
gi|29834120|gb|AAP04757.1| transcription elongation factor GreA [Chlamydophila caviae GPIC]
Length = 717
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 42/156 (26%), Positives = 79/156 (50%), Gaps = 5/156 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + T + F K++ +L+ +E K I +AR GDL EN+EY+ A E + +
Sbjct: 564 DILWTTPESFTKMKNKLQSLSGKEMVDNAKEIEDARVLGDLRENSEYKFALEKRARLQEE 623
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + RA ++ + D++ G VSL + +G+ Y I+G +AD + ++S+
Sbjct: 624 IRVLSEEVNRARILTKDIVFTDKVGVGCKVSLED-ENGNLITYSILGPWDADPDNYILSL 682
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S +A+ ++ K +G + K Y+I ++ I
Sbjct: 683 KSKLAQEMLDKSVGAAVQFQG----KKYKISRIQSI 714
>gi|28871733|ref|NP_794352.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213966755|ref|ZP_03394906.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato T1]
gi|301383263|ref|ZP_07231681.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato Max13]
gi|302133480|ref|ZP_07259470.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28854985|gb|AAO58047.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato str. DC3000]
gi|213928605|gb|EEB62149.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato T1]
gi|331018897|gb|EGH98953.1| transcription elongation factor GreB [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 165
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT+ G +++ + Q + A L E ++ K+ E +
Sbjct: 29 YVTAHGLRLLKEHVSSLQAQH-----------SAQSALGEASD----KQRLADLERDLRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+ +S +++ G+ ++ +++ ++ Q+VG+ +AD GL++ SP
Sbjct: 74 FNQRLQSAQVV-APALSTEKVQIGSWITFADEDDNHQR-VQLVGEDQADAAKGLINWGSP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ RALIG + GD ++ P G+ + E+L +
Sbjct: 132 LGRALIGAQKGDEVTWQRPAGDLSIEVLLIE 162
>gi|329942321|ref|ZP_08291131.1| transcription elongation factor GreA domain protein [Chlamydophila
psittaci Cal10]
gi|313847560|emb|CBY16548.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
gi|328815231|gb|EGF85219.1| transcription elongation factor GreA domain protein [Chlamydophila
psittaci Cal10]
Length = 717
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 78/156 (50%), Gaps = 5/156 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + +
Sbjct: 564 DILWTTPESFTKMKNKLQSLVGKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEE 623
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + RA ++ + D + G VSL + G+ Y I+G +AD + ++S+
Sbjct: 624 IRVLSEEVNRARILTKDIVFTDTVGVGCKVSLED-EQGNLITYSILGPWDADPDNYILSL 682
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S +A+ ++ K +G + K Y+I ++ I
Sbjct: 683 KSKLAQEMLNKSVGASLQFQG----KKYKISRIQSI 714
>gi|332286963|ref|YP_004421864.1| fused trancript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila psittaci 6BC]
gi|325506501|gb|ADZ18139.1| fused trancript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila psittaci 6BC]
gi|328914193|gb|AEB55026.1| transcription elongation factor GreA [Chlamydophila psittaci 6BC]
Length = 717
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + +
Sbjct: 564 DILWTTPESFTKMKNKLQSLVDKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEE 623
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + RA ++ + D + G VSL + G+ Y I+G +AD + ++S+
Sbjct: 624 IRVLSEEVNRARILTKDIVFTDTVGVGCKVSLED-EQGNLITYSILGPWDADPDNYILSL 682
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S +A+ ++ K +G + K Y+I ++
Sbjct: 683 KSKLAQEMLNKSVGASLQFQG----KKYKISRIQ 712
>gi|28875484|gb|AAO59965.1| GreA [uncultured bacterium]
Length = 597
Score = 96.8 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T+ G ++ ++ L+ Q R ++ A DL E +E E +A+
Sbjct: 459 YMTAAGAERYRRRLQQLVQ-RRDELL-----ASPDDDLPERSE-------LATLERELAQ 505
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ ++ A VI +++ D + FGA +VE + G + +Q+VG+ EA + GLV+ SP
Sbjct: 506 VSAVLQGAIVIRLASPPRDEVRFGAE-VVVEDDRGSRSRFQLVGENEAAPERGLVNWFSP 564
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ RAL G LG + P G Y + ++ +
Sbjct: 565 LGRALAGARLGQRVEWTTPAGRGAYVVREISY 596
>gi|70732647|ref|YP_262410.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5]
gi|68346946|gb|AAY94552.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5]
Length = 197
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/155 (23%), Positives = 72/155 (46%), Gaps = 17/155 (10%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
VT +G ++Q R+ S+ DL ++A+ K+ E
Sbjct: 58 AQPNYVTPQGLAELQA-----------RVALLHSQHSEQNDLGDDAD----KQRMAELER 102
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ + A+V+ + S D++ G+ V+ + +++ Q+VG+ +AD GL++
Sbjct: 103 DLRYFTQRLHSAQVV-TTANSTDKVQIGSRVTFAD-EQDRQQSVQLVGEDQADAAKGLIN 160
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+SP+ RAL+G + GD + P G + EI+++
Sbjct: 161 WASPLGRALLGAQPGDEVLWQRPAGNQLIEIIRIE 195
>gi|62184651|ref|YP_219436.1| fused transcript cleavage factor/uncharacterized domain-containing
protein [Chlamydophila abortus S26/3]
gi|62147718|emb|CAH63462.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
Length = 717
Score = 96.4 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 77/154 (50%), Gaps = 5/154 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
D + T + F K++ +L+ +E K I +ARA GDL EN+EY+ A E + +
Sbjct: 564 DILWTTPESFTKMKNKLQSLVGKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEE 623
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + RA ++ + D + G VSL + G+ Y I+G +AD + ++S+
Sbjct: 624 IRVLSEEVNRARILTKDIVFTDTVGVGCKVSLED-EQGNLITYSILGPWDADPDNYILSL 682
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S +A+ ++ K +G + K Y+I ++
Sbjct: 683 KSKLAQEMLNKSVGASLQFQG----KKYKISRIQ 712
>gi|256370764|ref|YP_003108589.1| putative transcription elongation factor GreA [Candidatus Sulcia
muelleri SMDSEM]
gi|256009556|gb|ACU52916.1| putative transcription elongation factor GreA [Candidatus Sulcia
muelleri SMDSEM]
Length = 157
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 80/135 (59%), Gaps = 1/135 (0%)
Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
+ ER +I + I+EA GDLSEN+EY+ AKE Q L E ++ L+ I +ID+S ++
Sbjct: 21 ENLERLKIAEEIAEAIEKGDLSENSEYKIAKENQRLLEIKIFNLKKKINNTRIIDLSKIN 80
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
+++ V + +G+ Y +V + E++++ +SI +PIA+ LIGK++G+I +
Sbjct: 81 TTKVSIFTKVKVKNIETGECIYYTLVPETESNIKKLKISIYTPIAKGLIGKKIGEIAHIK 140
Query: 143 APGGE-KTYEILQVL 156
P + +IL++
Sbjct: 141 LPNNKFVNLKILKIK 155
>gi|298488825|ref|ZP_07006852.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|298156666|gb|EFH97759.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
Length = 165
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 19/152 (12%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEAR-AYGDLSENAEYQAAKELQNLNEGRMA 64
VT++G +++ + +A A+ A GD ++ K+ Q E +
Sbjct: 29 YVTAEGLKLLKKHVSSL---------QAQHSAQTALGDAAD-------KQRQADLERDLR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ A+V+ + +S +++ G+ V+ ++ ++ +VG+ +AD GL++ S
Sbjct: 73 YYTQRLQSAQVV-TTAVSTEKVQIGSWVTFADEEDNRQR-VHLVGEDQADAAKGLINWGS 130
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+ RALIG + GD + P G ++ EIL +
Sbjct: 131 PLGRALIGAQKGDEVVWEPPAGNQSIEILLIE 162
>gi|302062497|ref|ZP_07254038.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tomato K40]
Length = 165
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT+ G +++ + Q + A L E ++ K+ E +
Sbjct: 29 YVTAHGLRLLKEHVSSLQAQH-----------SAQSALGEASD----KQRLADLERDLRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+ +S +++ G+ ++ +++ ++ Q+VG+ +AD GL++ SP
Sbjct: 74 FNQRLQSAQVV-APALSTEKVQIGSWITFADEDDNHQR-VQLVGEDQADAAKGLINWGSP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ RALIG + GD ++ P G+ + E+L +
Sbjct: 132 LGRALIGAQKGDEVTWQRPAGDLSIEVLLIE 162
>gi|330888755|gb|EGH21416.1| transcription elongation factor GreB [Pseudomonas syringae pv. mori
str. 301020]
Length = 165
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 19/152 (12%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEAR-AYGDLSENAEYQAAKELQNLNEGRMA 64
VT++G +++ + +A A+ A GD ++ K+ Q E +
Sbjct: 29 YVTAEGLKLLKKHVSSL---------QAQHSAQTALGDAAD-------KQRQADLERDLR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ A+V+ + +S +++ G+ V+ ++ + ++ +VG+ +AD GL++ S
Sbjct: 73 YYTQRLQSAQVV-TTAVSTEKVQIGSWVTFADEENNRQR-VHLVGEDQADAAKGLINWGS 130
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+ RALIG + GD + P G ++ EIL +
Sbjct: 131 PLGRALIGAQKGDEVVWERPAGNQSIEILLIE 162
>gi|223557977|gb|ACM90983.1| transcription elongation factor GreA [uncultured bacterium URE4]
Length = 112
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 58/102 (56%)
Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
Q L E ++A L+ + A VID S +S D + + V++ N+ K +QIVG+ EAD
Sbjct: 10 RQGLLEVKIARLKEKVANARVIDESKLSADTVQLLSKVTVENMNAKMKMQFQIVGESEAD 69
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
GL+S S+PI +AL+G G+++ P G ++IL +
Sbjct: 70 FSKGLLSASTPIGKALMGHGKGEVVEAKVPSGIMKFKILDIS 111
>gi|289628327|ref|ZP_06461281.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289650125|ref|ZP_06481468.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330869003|gb|EGH03712.1| transcription elongation factor GreB [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 165
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 19/152 (12%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEAR-AYGDLSENAEYQAAKELQNLNEGRMA 64
VT++G +++ + +A A+ A GD ++ K+ Q E +
Sbjct: 29 YVTAEGLKLLKKHVSSL---------QAQHSAQTALGDAAD-------KQRQADLERDLR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ A+V+ + +S +++ G+ V+ ++ ++ +VG+ +AD GL++ S
Sbjct: 73 YYTQRLQSAQVV-TTAISTEKVQIGSWVTFADEEDNRQR-VHLVGEDQADAAKGLINWGS 130
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+ RALIG + GD + P G ++ EIL +
Sbjct: 131 PLGRALIGAQKGDEVVWERPAGNQSIEILLIE 162
>gi|71735306|ref|YP_276410.1| transcription elongation factor GreB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257482138|ref|ZP_05636179.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|71555859|gb|AAZ35070.1| transcription elongation factor GreB [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|115265608|dbj|BAF32869.1| transcription elongation factor GreB [Pseudomonas syringae pv.
phaseolicola]
gi|320322617|gb|EFW78710.1| transcription elongation factor GreB [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330598|gb|EFW86577.1| transcription elongation factor GreB [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330873441|gb|EGH07590.1| transcription elongation factor GreB [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330987544|gb|EGH85647.1| transcription elongation factor GreB [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331011394|gb|EGH91450.1| transcription elongation factor GreB [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 165
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 19/152 (12%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEAR-AYGDLSENAEYQAAKELQNLNEGRMA 64
VT++G +++ + +A A+ A GD ++ K+ Q E +
Sbjct: 29 YVTAEGLKLLKKHVSSL---------QAQHSAQTALGDAAD-------KQRQADLERDLR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ A+V+ + +S +++ G+ V+ ++ ++ +VG+ +AD GL++ S
Sbjct: 73 YYTQRLQSAQVV-TTAVSTEKVQIGSWVTFADEEDNRQR-VHLVGEDQADAAKGLINWGS 130
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+ RALIG + GD + P G ++ EIL +
Sbjct: 131 PLGRALIGAQKGDEVVWERPAGNQSIEILLIE 162
>gi|218512591|ref|ZP_03509431.1| transcription elongation factor GreA [Rhizobium etli 8C-3]
Length = 106
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 60/87 (68%), Positives = 73/87 (83%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NEGR+ EL
Sbjct: 1 MTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNEGRITEL 60
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVS 93
E++ RAEVID++ MSGD+I FGA
Sbjct: 61 EDLTARAEVIDLTKMSGDKIKFGAQGE 87
>gi|229592705|ref|YP_002874824.1| putative transcription elongation factor [Pseudomonas fluorescens
SBW25]
gi|229364571|emb|CAY52453.1| putative transcription elongation factor [Pseudomonas fluorescens
SBW25]
Length = 162
Score = 95.7 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 20/150 (13%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T++G ++Q ++ Q A S A GD K+ Q E +
Sbjct: 30 LTAQGLAQLQAKVAQLQH--------AYSIESAKGD----------KQRQADLERDLRYF 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A+V+ +T S D++ G+ V+ +++ Q+VG+ +AD +GL++ SP+
Sbjct: 72 NQRLQSAQVVAPAT-STDKVQIGSWVTFAN-EQDEQQRIQLVGEDQADANAGLINWGSPL 129
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
RAL+G ++GD + P G++ E+L++
Sbjct: 130 GRALLGAQVGDEVLWKRPVGDQLIEVLRIE 159
>gi|330961596|gb|EGH61856.1| transcription elongation factor GreB [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 165
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 74/152 (48%), Gaps = 19/152 (12%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEA-RAYGDLSENAEYQAAKELQNLNEGRMA 64
VT++G + +Q+++ +A A A GD ++ K+ E +
Sbjct: 29 YVTARGLELLQEQVSNL---------QAQHSAQSALGDDAD-------KQRLADLERDLR 72
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ A+V+ + S +++ G+ V+ +++ ++ +VG+ +AD +GL++ S
Sbjct: 73 YFNQRLHSAQVVAPAA-STEKVQIGSWVTFADEDDNRQR-VHLVGEDQADAANGLINWGS 130
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+ RALIG + GD + P G+ + E+L +
Sbjct: 131 PLGRALIGAQKGDEVVWQRPAGDLSIEVLLIE 162
>gi|77461094|ref|YP_350601.1| GreA/GreB family elongation factor [Pseudomonas fluorescens Pf0-1]
gi|77385097|gb|ABA76610.1| putative transcription elongation factor [Pseudomonas fluorescens
Pf0-1]
Length = 164
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 17/151 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT +G ++Q +L Q +E A G+ QA K+ E +
Sbjct: 29 YVTPQGLTQLQTKLAELQSLH--------AEQSAKGE-------QADKQRLADLERDLRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V + S D++ G+ V+ + G ++ Q+VG+ +AD +GL++ +SP
Sbjct: 74 FNQRVASAQVA-PAPTSNDKVQIGSWVTYAD-EHGTERRVQLVGEDQADAANGLINWASP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ RAL+G L D + P G++ E++++
Sbjct: 132 LGRALLGARLNDEVLWQRPAGDQVIEVIRIE 162
>gi|227487834|ref|ZP_03918150.1| transcription elongation factor GreA [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227542474|ref|ZP_03972523.1| transcription elongation factor GreA [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227092161|gb|EEI27473.1| transcription elongation factor GreA [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227181672|gb|EEI62644.1| transcription elongation factor GreA [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 180
Score = 95.3 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 3/148 (2%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V K +T + +++EL+ RP I I+E R GDL ENA Y AA++ Q E
Sbjct: 4 VQKTYITPESKAALERELKALID-NRPAIAAEINERREEGDLKENAGYDAARDQQAQEES 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119
R+ E+E ++ + + G+ + DK+ + I A +
Sbjct: 63 RIREIEEMLKNSTTERTALKEGEAQVGSVVHVYYNDDENDKETFLIGTRATASDNPDLET 122
Query: 120 VSISSPIARALIGKELGDIISVNAPGGE 147
S SP+ A++G G+ AP G
Sbjct: 123 YSELSPLGAAVLGATEGETRQYTAPNGV 150
>gi|289806266|ref|ZP_06536895.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 79
Score = 94.9 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/77 (44%), Positives = 57/77 (74%)
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
+ R+ FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGKE D++ +
Sbjct: 3 NNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVI 62
Query: 142 NAPGGEKTYEILQVLWI 158
PGG+ YE+L+V ++
Sbjct: 63 KTPGGDVEYEVLKVEYL 79
>gi|253795713|ref|YP_003038809.1| putative transcription elongation factor GreA [Candidatus Hodgkinia
cicadicola Dsem]
gi|253740021|gb|ACT34356.1| putative transcription elongation factor GreA [Candidatus Hodgkinia
cicadicola Dsem]
Length = 155
Score = 94.1 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T+ G+ + +L WR+Q ++P + + AR+ GDLSENA+YQAA+ LNE R+ E+
Sbjct: 6 LTALGYISLVAQLNWRRQHKKPALKAQLKAARSLGDLSENADYQAARREDKLNEARINEI 65
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ RA++ + + +R ++ +TV L + G + IVGD EA V +SS +
Sbjct: 66 LQTLARAKLA-PARSAANRPSYNSTVVLKRAD-GKLLAFNIVGDDEAIATEANVGLSSDV 123
Query: 127 ARALIGKELGDIISV 141
AR + K++GD++ V
Sbjct: 124 ARQCLNKKVGDVVVV 138
>gi|227328601|ref|ZP_03832625.1| transcription elongation factor GreA [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 79
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 56/76 (73%)
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
R+ FG+TV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGKE D++ +
Sbjct: 4 NGRVIFGSTVTVMNLDNEEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVIR 63
Query: 143 APGGEKTYEILQVLWI 158
PGG+ YEIL+V ++
Sbjct: 64 TPGGDVEYEILKVEYL 79
>gi|27382335|ref|NP_773864.1| transcription elongation factor regulatory protein [Bradyrhizobium
japonicum USDA 110]
gi|27355506|dbj|BAC52489.1| transcription elongation factor [Bradyrhizobium japonicum USDA 110]
Length = 162
Score = 93.0 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 22/150 (14%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR-MAE 65
VT G +Q +L+ +A A+A D++E K Q+ R
Sbjct: 31 VTEAGLQALQTQLQ--------EAREAYEAAQAIDDVNE-------KRRQSAVPLRDARY 75
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + A+VI + S D +AFG+TV+ + G + Y+IVG+ EAD ++G +S SP
Sbjct: 76 LTERLRTAQVI-PTPASTDTVAFGSTVTFSRPD-GRVQTYRIVGEDEADPKAGSISFVSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+AR+LIGK +GD++ G + EIL +
Sbjct: 134 VARSLIGKAVGDVV----GAGTQEIEILSI 159
>gi|197123173|ref|YP_002135124.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
gi|196173022|gb|ACG73995.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
Length = 149
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T +GF ++ E E RPRI+ + A A GD SENAEY K+ + R+
Sbjct: 7 YITPEGFRRLAAEHARIWTELRPRIVAEVEAAAALGDRSENAEYIYGKKKLRELDRRLRF 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
L + V++ R FGA V++ E+ G ++ ++VG E DV +G
Sbjct: 67 LSEKMDSLSVVEPRAHPDGRAFFGAWVTV-EQEDGQERRVRLVGPDEFDVAAG 118
>gi|189423237|ref|YP_001950414.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ]
gi|189419496|gb|ACD93894.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ]
Length = 142
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 57/97 (58%)
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ ELE + +AE++D + + D + + VSL + +SG++ Y +V +AD+ G +
Sbjct: 36 RYIEELEQELLKAEIVDATGVPPDVVTMNSRVSLQDLDSGEQLQYTLVFPGDADLNLGKI 95
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI +PI AL G GD IS + PGG + +I +VL+
Sbjct: 96 SILAPIGTALFGYRTGDRISWSVPGGVRKLKIKKVLY 132
>gi|330952915|gb|EGH53175.1| transcription elongation factor GreA/GreB [Pseudomonas syringae Cit
7]
Length = 165
Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT++G +++ + Q + A L E A+ K+ E +
Sbjct: 29 YVTAEGLTLLKKHVNSLQAQH-----------SAQTALGEAAD----KQRLADLERDLRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+ +S +++ G+ V+ ++ ++ +VG+ +AD +GL++ SP
Sbjct: 74 FNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQDNQQR-VHLVGEDQADAANGLINWGSP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ RALIG + GD + P G+++ E+L +
Sbjct: 132 LGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162
>gi|315127999|ref|YP_004070002.1| transcription elongation factor and transcript cleavage
[Pseudoalteromonas sp. SM9913]
gi|315016513|gb|ADT69851.1| transcription elongation factor and transcript cleavage
[Pseudoalteromonas sp. SM9913]
Length = 96
Score = 92.2 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
M L I +++D S + ++ FGA V + +G+ K ++IVG E ++ +SI
Sbjct: 1 MRYLRKRIPDLKIVDYSPVQDGKVFFGAWVEIEN-EAGECKKFRIVGPDEIYDRNDYISI 59
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ K++ D V P G K + + + +
Sbjct: 60 DSPMARALLKKQVDDDFEVMTPQGAKQWYVNNISY 94
>gi|302187999|ref|ZP_07264672.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
syringae 642]
Length = 165
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT++G +++ + Q + + A+ EA K+ E +
Sbjct: 29 YVTAEGLTLLKKHVSSLQAQHSTQT--ALGEAAD-------------KQRLADLERDLRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+ +S +++ G+ V+ ++ ++ +VG+ +AD GL++ SP
Sbjct: 74 FNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQDNQQR-VHLVGEDQADAAKGLINWGSP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ RALIG + GD + P G+++ E+L +
Sbjct: 132 LGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162
>gi|237801440|ref|ZP_04589901.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331024299|gb|EGI04356.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 116
Score = 91.8 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
K+ E + + A+V+ +S D++ G+ V+ +++ ++ +VG+ +
Sbjct: 12 KQRLADIERDLRYFNQRLQSAQVV-APAVSTDKVQIGSWVTFADEDDNRQR-VHLVGEDQ 69
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
AD +GL++ SP+ RALIG GD + P G+ + E+L +
Sbjct: 70 ADAANGLINWGSPLGRALIGARQGDEVVWQRPAGDLSIEVLLIE 113
>gi|213584093|ref|ZP_03365919.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 71
Score = 91.4 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 54/71 (76%)
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
FGATV+++ ++ +++ Y+IVGD EAD + L+S++SPIAR LIGKE D++ + PGG+
Sbjct: 1 FGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVIKTPGGD 60
Query: 148 KTYEILQVLWI 158
YE+L+V ++
Sbjct: 61 VEYEVLKVEYL 71
>gi|226356455|ref|YP_002786195.1| transcription elongation factor [Deinococcus deserti VCD115]
gi|226318445|gb|ACO46441.1| putative transcription elongation factor [Deinococcus deserti
VCD115]
Length = 162
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 8/162 (4%)
Query: 1 MVDKIPVTSKGFDKIQQELR---WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M D + +T +G+++++Q L R +E + + +A + S NA + +
Sbjct: 1 MPDAVQLTREGYERLEQSLEKERQRLEETITSLANTVDDAMDLENRSLNA--AQIGQERI 58
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
E R+ ELE+++ RA +++ + ++A G+ V L + G + Q+V E +
Sbjct: 59 AIEARILELEDVLARAVIVEEEDLPRGQVAVGSVVMLEDDKHGRQLQVQLVSAVEISAMT 118
Query: 118 G---LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SP+ +AL+G+ G+ V G Y + V
Sbjct: 119 EGVTQVSDDSPVGKALMGRREGETFDVELEAGRVQYTVRSVT 160
>gi|330969544|gb|EGH69610.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 165
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT++G ++ + + ++ A L E A+ K+ E +
Sbjct: 29 YVTAEGLTLLK------KHVGSLQAQHSMQTA-----LGEAAD----KQRLADLERDLRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+ +S +++ G+ V+ ++ ++ +VG+ +AD +GL++ SP
Sbjct: 74 FNQRLQSAQVV-APAVSTEKVQIGSWVTFADEEDNRQR-VHLVGEDQADAANGLINWGSP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ RALIG + GD + P G+++ E+L +
Sbjct: 132 LGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162
>gi|297170470|gb|ADI21501.1| transcription elongation factor [uncultured myxobacterium
HF0070_11L13]
Length = 91
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
+++D S ++ FGA V + + G ++IVG E + +SI SP+ARAL+
Sbjct: 4 NLKIVDYSPQQEGKVFFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISIDSPMARALL 62
Query: 132 GKELGDIISVNAPGGEKTYEILQVLWI 158
KE+GD+ VN P GE ++ + + ++
Sbjct: 63 KKEVGDLAVVNTPAGEASWYVNAIEYV 89
>gi|260576470|ref|ZP_05844460.1| GreA/GreB family elongation factor [Rhodobacter sp. SW2]
gi|259021353|gb|EEW24659.1| GreA/GreB family elongation factor [Rhodobacter sp. SW2]
Length = 167
Score = 91.0 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 26/157 (16%)
Query: 6 PVTSKGFDKIQQELRWRQQEER-----PRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
VT +G +Q L Q P + + EA A E
Sbjct: 27 YVTPRGLALLQTRLAEAQARLAALRARPERLDKLPEAAA--------------------E 66
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ LE + A +D S+ +AFGA V + G ++ +QI G+ EAD +
Sbjct: 67 RDIRYLEARLRSAIPVDPSSQPAGEVAFGARVEVA-LADGSRQVWQITGEDEADATQNRI 125
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ SP+ARAL+G E+GD++ P G E+L + +
Sbjct: 126 APQSPLARALLGAEVGDLVIWRKPSGPVELEVLAIAY 162
>gi|330937778|gb|EGH41648.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
pisi str. 1704B]
gi|330981878|gb|EGH79981.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 165
Score = 90.7 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT++G +++ + Q + + A+ EA K+ E +
Sbjct: 29 YVTAEGLTMLKKHVSSLQAQHSTQT--ALGEAAD-------------KQRLADLERDLRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+ +S +++ G+ V+ ++ ++ +VG+ +AD G ++ SP
Sbjct: 74 FNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQDNQQR-VHLVGEDQADAAKGQINWGSP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ RALIG + GD + P G+++ E+L +
Sbjct: 132 LGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162
>gi|150377254|ref|YP_001313849.1| transcription elongation factor regulatory protein [Sinorhizobium
medicae WSM419]
gi|150031801|gb|ABR63916.1| GreA/GreB family elongation factor [Sinorhizobium medicae WSM419]
Length = 160
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 22/150 (14%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR-MAE 65
VT +G ++ +L+ AR D + E + Q N R M
Sbjct: 31 VTEEGLKALESQLKQ---------------AREAYDATSTIEDVNERRRQAANPLRDMRY 75
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+++ +S D +AFG+TV+ ++ G ++Y+IVG+ EAD +SG +S +SP
Sbjct: 76 FAERVRTAQLV-PGPVSFDAVAFGSTVTFS-RDDGRVQSYRIVGEDEADPRSGSISYASP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+ARAL+GK +GD++SV G++ E+L +
Sbjct: 134 VARALMGKAVGDVVSV----GDQELEVLAI 159
>gi|307140091|ref|ZP_07499447.1| transcription elongation factor GreB [Escherichia coli H736]
Length = 93
Score = 90.3 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 4 KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
K P+ T +G++K++QEL + +EERP + K ++ A + GD SENA+YQ K+ + R
Sbjct: 2 KTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRR 61
Query: 63 MAELENIITRAEVIDISTMSGDRIAF 88
+ L + +++D S ++ F
Sbjct: 62 VRYLTKCLENLKIVDYSPQQEGKVFF 87
>gi|330895488|gb|EGH27800.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 165
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT++G +++ + Q + + A+ EA K+ E +
Sbjct: 29 YVTAEGLTMLKKHVSGLQAQHSTQT--ALGEAAD-------------KQRLADLERDLRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+ +S +++ G+ V+ ++ ++ +VG+ +AD G ++ SP
Sbjct: 74 FNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQDNQQR-VHLVGEDQADAAKGQINWGSP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ RALIG + GD + P G+++ E+L +
Sbjct: 132 LGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162
>gi|66047490|ref|YP_237331.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
syringae B728a]
gi|63258197|gb|AAY39293.1| Prokaryotic transcription elongation factor GreA/GreB [Pseudomonas
syringae pv. syringae B728a]
Length = 165
Score = 90.3 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 17/151 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT++G ++ + + ++ A L E A+ K+ E +
Sbjct: 29 YVTAEGLTLLK------KHVGSLQAQHSMQTA-----LGEAAD----KQRLADLERDLRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+ +S +++ G+ V+ ++ ++ +VG+ +AD +GL++ SP
Sbjct: 74 FNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQDNRQR-VHLVGEDQADAANGLINWGSP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ RALIG + GD + P G+++ E+L +
Sbjct: 132 LGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162
>gi|289610114|emb|CBI60320.1| unnamed protein product [Sordaria macrospora]
Length = 108
Score = 90.3 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 65 ELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L + A V+D + + R FGATV++ +++ + ++VGD EAD G + +
Sbjct: 15 FLAKRMKAARVVDPAAQTERGRAWFGATVTIADEDDNH-RTLELVGDDEADAGKGRIGWN 73
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL G +GD+ +V P G K YE++ + +
Sbjct: 74 SPMARALRGSAVGDVRTVALPAGAKEYEVMAIAY 107
>gi|226355352|ref|YP_002785092.1| transcription elongation factor [Deinococcus deserti VCD115]
gi|226317342|gb|ACO45338.1| putative transcription elongation factor [Deinococcus deserti
VCD115]
Length = 162
Score = 89.5 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
++ +T +GF+++Q+ L +Q+ + + E +E+ + AK + E R
Sbjct: 6 RQVRLTREGFERLQKTLEQ-EQQRLAEATRILQEQMETSADTEDTGLEDAKREKMAIEAR 64
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG---L 119
+ ELE+ + RA +I+ G R+ GA V+L + + Q+V EA V G
Sbjct: 65 LDELEDTLARATIIEDHENDG-RVELGAIVNLSNETTKKDMKVQVVSAPEAAVLGGSLPR 123
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+S SP+ + L+G++ GD VN GG++ Y++ + +
Sbjct: 124 ISEDSPVGKELMGRKTGDSFVVNLEGGKQVKYKVKSIEY 162
>gi|320334324|ref|YP_004171035.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
21211]
gi|319755613|gb|ADV67370.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
21211]
Length = 157
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPR--IIKAISEARAYGDLSENAEYQAAKELQNL 58
M I VT+ G ++Q L ++ +++ EA +E+ A++
Sbjct: 1 MASPIQVTAAGLQRLQGSLDRERERAEEARRVLREQMEANE----AESLGLTEAQQHLAA 56
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
E R+ ELE +I AEV+ ST D +A G+T++L+ +G + ++V EA
Sbjct: 57 IEARIEELEGMIADAEVLPAST--SDAVALGSTLTLLNVENGQVRRVRLVSPVEATGSVD 114
Query: 119 ---LVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
L+S SP+ AL+G+ +G+ SV G Y++
Sbjct: 115 GVALISTQSPVGAALLGRRVGETFSVRLGGRTAEYQV 151
>gi|330873471|gb|EGH07620.1| transcription elongation factor GreB [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 165
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT+ G +++ + Q + + A+ EA K+ E +
Sbjct: 29 YVTAYGLTLLKEHVSSLQAQHSAQ--NALGEATD-------------KQRLADLERDLRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+ +S +++ G+ ++ ++ ++ Q+VG+ +AD GL++ SP
Sbjct: 74 FTQRLQSAQVV-APALSTEKVQIGSWITFTDEEDNHQR-VQLVGEDQADATRGLINWGSP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ AL+G + GD + P G++T E+L +
Sbjct: 132 LGSALLGAQKGDEVMWKRPAGDQTIEVLLIE 162
>gi|78223803|ref|YP_385550.1| GreA/GreB family elongation factor [Geobacter metallireducens
GS-15]
gi|78195058|gb|ABB32825.1| GreA/GreB family elongation factor [Geobacter metallireducens
GS-15]
Length = 142
Score = 89.1 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 57/95 (60%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE+ + RAEV++ + D I + V L + +SG++ +Y +V +A ++ +SI
Sbjct: 38 LRELEDELLRAEVVEPQDIPADVITMNSRVCLKDLDSGEELHYTLVFPGDARLEDNRISI 97
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+P+ AL+G +GD I+ PGG + ++ ++L+
Sbjct: 98 LAPVGTALLGYRVGDTITWKVPGGTRRLKVKKILY 132
>gi|110639992|ref|YP_680202.1| transcription elongation factor [Cytophaga hutchinsonii ATCC 33406]
gi|110282673|gb|ABG60859.1| transcription elongation factor [Cytophaga hutchinsonii ATCC 33406]
Length = 149
Score = 88.7 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 50 QAAKELQNLNEGR----MAELE-----NIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
++ Q +NE + ++ +E N + ++++ + + + + V++V +S
Sbjct: 23 DYSRIQQCINEAKQFKSISVVEANSLMNELKLGKLVEPEEIPNNVVTMHSIVTIVFMDSN 82
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ +Q+V +ADV++ +SI SPIA ALIG ++GD I P G +I + +
Sbjct: 83 KRVEFQLVYPDKADVKNNKISIFSPIATALIGYQIGDEIEWCVPAGMTKIKIESIAY 139
>gi|170723669|ref|YP_001751357.1| GreA/GreB family elongation factor [Pseudomonas putida W619]
gi|169761672|gb|ACA74988.1| GreA/GreB family elongation factor [Pseudomonas putida W619]
Length = 165
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 66/151 (43%), Gaps = 17/151 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT+ G ++QQ + + + GD A+ E +
Sbjct: 29 YVTTNGLRQLQQRVADLN-----ALRAELQAQGEQGDKQRLADA----------ERDLRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+ + S ++ G+ V + G ++ Q+VG+ EAD GL++ SP
Sbjct: 74 FSARVQSAQVV-PAATSNSKVQIGSRVRFAD-EQGQEQTVQLVGEDEADASRGLINWGSP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ RAL+G GD ++ P G++ E++ ++
Sbjct: 132 LGRALLGAGPGDEVTWRRPAGDQVIEVMDIV 162
>gi|115265559|dbj|BAF32821.1| transcription elongation factor [Pseudomonas syringae pv.
actinidiae]
gi|330965293|gb|EGH65553.1| transcription elongation factor GreB [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 165
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/151 (21%), Positives = 69/151 (45%), Gaps = 17/151 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT+ G +++ + Q + + A+ EA K+ E +
Sbjct: 29 YVTAYGLTLLKEHVGSLQAQHSAQ--NALGEATD-------------KQRLADLERDLRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+ +S +++ G+ ++ ++ ++ Q+VG+ +AD GL++ SP
Sbjct: 74 FTQRLQSAQVV-APALSTEKVQIGSWITFTDEEDNHQR-VQLVGEDQADATRGLINWGSP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ AL+G + GD + P G++T E+L +
Sbjct: 132 LGSALLGAQKGDEVMWKRPAGDQTIEVLLIE 162
>gi|289675905|ref|ZP_06496795.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
syringae FF5]
Length = 123
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
A K+ E + + A+V+ +S +++ G+ V+ ++ ++ +VG+
Sbjct: 17 ADKQRLADLERDLRYFNQRLQSAQVV-APAVSTEKVQIGSWVTFADEQDNQQR-VHLVGE 74
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+AD G ++ SP+ RALIG + GD + P G+++ E+L +
Sbjct: 75 DQADAAKGQINWGSPLGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 120
>gi|332981932|ref|YP_004463373.1| GreA/GreB family elongation factor [Mahella australiensis 50-1 BON]
gi|332699610|gb|AEE96551.1| GreA/GreB family elongation factor [Mahella australiensis 50-1 BON]
Length = 138
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 18/145 (12%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+DK++Q L + ++ I + E NAE + L + + L ++
Sbjct: 11 YDKLRQHLDAIKSKKDDMIDRYFPEL--------NAERY---DFMQLMDDYIKRLGELLQ 59
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
+ + G+TV + + + + +V E++ G +S SPI ++L+
Sbjct: 60 QN-------CDTPFVIIGSTVKVRDIDDDYTITFTLVCPHESNPVKGCISYLSPIGKSLL 112
Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
K+ G+I+SV P GE YEIL++
Sbjct: 113 LKKAGEIVSVVTPNGEVRYEILEIK 137
>gi|207110701|ref|ZP_03244863.1| transcription elongation factor GreA [Helicobacter pylori
HPKX_438_CA4C1]
Length = 84
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 37/83 (44%), Positives = 55/83 (66%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K P++ G++KI EL+ ++ ERP I+K I AR +GDL ENAEY AAKE Q E
Sbjct: 1 MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60
Query: 62 RMAELENIITRAEVIDISTMSGD 84
R+ +L I+ A+VID S ++ +
Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHN 83
>gi|39995838|ref|NP_951789.1| nucleoside diphosphate kinase regulator protein [Geobacter
sulfurreducens PCA]
gi|39982602|gb|AAR34062.1| nucleoside diphosphate kinase regulator protein, putative
[Geobacter sulfurreducens PCA]
gi|307634737|gb|ADI83574.2| RNA polymerase-binding protein Rnk [Geobacter sulfurreducens KN400]
Length = 142
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 56/97 (57%)
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ ELE+ + RAEV++ + D + + V+L + +G++ Y++V +A ++ +
Sbjct: 36 RHLQELEDELLRAEVVEPQQIPADVVTMNSRVALKDLATGEEMVYELVFPSDARLEENRI 95
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI +P+ AL+G GD I+ PGG + +I ++L+
Sbjct: 96 SILAPVGTALLGYRAGDTITWKVPGGTRKIKITKILY 132
>gi|104780044|ref|YP_606542.1| transcription elongation factor [Pseudomonas entomophila L48]
gi|95109031|emb|CAK13727.1| putative transcription elongation factor [Pseudomonas entomophila
L48]
Length = 165
Score = 87.6 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT+ G ++QQ + + E A GD ++ K+ E +
Sbjct: 29 YVTASGLAQLQQRVATLKALH--------GELLAEGDRAD-------KQRLADTERDLRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ + A+V+ + S ++ G+ V V+ +G Q+VG+ +AD GLV+ SP
Sbjct: 74 FTSRLHSAQVV-PAATSTQKVQIGSRVRFVD-ENGQAHQVQLVGEDQADAVHGLVNWGSP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ RAL+G GD + P G++ EI+ V
Sbjct: 132 LGRALLGAGPGDEVLWRRPAGDQMIEIIGVE 162
>gi|325142644|gb|EGC65035.1| transcription elongation factor greA [Neisseria meningitidis
961-5945]
Length = 72
Score = 86.8 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 36/70 (51%), Positives = 55/70 (78%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++GDLSENAEY+AAKE Q EG
Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60
Query: 62 RMAELENIIT 71
R++ELE+ ++
Sbjct: 61 RISELEHKLS 70
>gi|298206901|ref|YP_003715080.1| transcription elongation factor, putative [Croceibacter atlanticus
HTCC2559]
gi|83849535|gb|EAP87403.1| transcription elongation factor, putative [Croceibacter atlanticus
HTCC2559]
Length = 166
Score = 86.8 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 15/152 (9%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT G +++ EL+ +E+ IK E R + +M +
Sbjct: 30 YVTPNGLQELKTELKQLAEEQANLGIKDDQERR---------------RAIAVITAKMNQ 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + A ++D D + FGATV L K S + +QIVG EA+++ ++ +P
Sbjct: 75 LKERLASARLLDPKDQPKDEVRFGATVKLKNKTSNLVQEFQIVGVDEANIKKQKIAFVAP 134
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ A+IG ++ + +S N G + EIL + +
Sbjct: 135 LVSAIIGAKVNENVSFNLGGEVRELEILSITY 166
>gi|302039171|ref|YP_003799493.1| transcription elongation factor, greA/greB family [Candidatus
Nitrospira defluvii]
gi|300607235|emb|CBK43568.1| Transcription elongation factor, greA/greB family [Candidatus
Nitrospira defluvii]
Length = 138
Score = 86.4 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 50/92 (54%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LEN + RA V+D S + D + + V + + +G + Y +V +A +Q +SI +P
Sbjct: 37 LENELDRAHVVDPSAVPHDVVTMNSQVRIEDVETGAENVYTLVFPSDAGIQEKKLSILAP 96
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I AL+G G+ + + P G +T I +VL+
Sbjct: 97 IGTALLGARAGETVDWSVPAGVRTVRIKEVLY 128
>gi|311746267|ref|ZP_07720052.1| transcription elongation factor GreA [Algoriphagus sp. PR1]
gi|126576500|gb|EAZ80778.1| transcription elongation factor GreA [Algoriphagus sp. PR1]
Length = 166
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT G +++Q E + +E+ E R + ++
Sbjct: 30 YVTETGMEELQAEKQALIEEKSNLTAATEQEKRIASN---------------FISAKIKL 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ I A+++D+S + I FGA V+L S YQ+VG EAD+ +S SP
Sbjct: 75 LDERIATAKIVDLSEQPKNEIRFGAKVTLKIGKSPKAMTYQLVGVDEADISKNKISFISP 134
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA LIGK++G+ +++ G++ +E++++ +
Sbjct: 135 IAMILIGKKVGEKATLSLTKGDRVFEVMEIKY 166
>gi|254669933|emb|CBA04519.1| transcription elongation factor GreA [Neisseria meningitidis
alpha153]
Length = 72
Score = 86.0 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
FG TV+L + + + YQIVG+ EAD++ G + + SPIARALIGKE GD V APGG
Sbjct: 2 FGTTVTLEDLETEEHVTYQIVGEDEADIKQGKIYVGSPIARALIGKEEGDTAEVQAPGGV 61
Query: 148 KTYEILQVLWI 158
+ Y+I++V +I
Sbjct: 62 REYDIIEVRYI 72
>gi|90423091|ref|YP_531461.1| transcription elongation factor regulatory protein
[Rhodopseudomonas palustris BisB18]
gi|90105105|gb|ABD87142.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
BisB18]
Length = 160
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 6 PVTSKGFDKIQQELRW-RQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
VT+ G +Q +L R E + I ++E R R+
Sbjct: 30 WVTAAGLKALQDQLDAARTGVEAAQAIADVNERRRQE--------AGPLRDARYLAARVR 81
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
E + S D +AFG+TV+ + G ++++IVG+ EAD ++G +S S
Sbjct: 82 TAELM--------PVPSSSDIVAFGSTVTFR-RGDGRVQSFRIVGEDEADPKAGSISFVS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+AR L+ K +GD++ G + EI+ +
Sbjct: 133 PVARLLLRKSVGDVV----GSGAQELEIIAI 159
>gi|197117702|ref|YP_002138129.1| RNA polymerase-binding protein Rnk [Geobacter bemidjiensis Bem]
gi|197087062|gb|ACH38333.1| RNA polymerase-binding protein Rnk [Geobacter bemidjiensis Bem]
Length = 143
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/108 (32%), Positives = 59/108 (54%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
A+ Q + + EL + RAEV+D + + D I + V L + +S ++ Y +V
Sbjct: 26 DKARSTQTRDSKNLKELGEELVRAEVVDPAGIPPDVITMNSKVCLQDLDSEEELVYTLVF 85
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
EAD+ SG +SI +P+ A+IG GD I+ PGG K ++ ++L+
Sbjct: 86 PNEADLASGKISILAPVGTAMIGFRTGDRITWPVPGGMKNLKVKKILY 133
>gi|94985009|ref|YP_604373.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM
11300]
gi|94555290|gb|ABF45204.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM
11300]
Length = 162
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ +T +GF+++Q+ L +Q + + E +E+ + AK + E
Sbjct: 5 TRQVRLTREGFERLQRTLAQ-EQARLAEATRILQEQMETSADNEDTGLEDAKREKLNIEA 63
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--- 118
R+ ELE+ + RA +I+ +G R+ GA V+L + + Q+V EA V G
Sbjct: 64 RIEELEDTLARATLIEDHENAG-RVELGAVVTLNNETTKQTMRVQVVSAPEATVLGGSLP 122
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+S SP+ R L+G++ + VN G++ Y + + +
Sbjct: 123 RISEESPVGRQLMGRKKDETFVVNLENGKQVKYRVQDIEY 162
>gi|222086639|ref|YP_002545173.1| transcription elongation factor protein [Agrobacterium radiobacter
K84]
gi|221724087|gb|ACM27243.1| transcription elongation factor protein [Agrobacterium radiobacter
K84]
Length = 160
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 22/150 (14%)
Query: 7 VTSKGFDKIQQELRWRQQEERPR-IIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G ++ +L+ + I+ ++E R R+
Sbjct: 31 MTEAGLKALELQLQQARAAYAAASTIEDVNERRRQA--------AGPLRDLRYLAERIRT 82
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ I + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP
Sbjct: 83 AQPI--------PAPASIDIVAFGSTVTFS-RDDGRVQTYRIVGEDEADPKTGSISFVSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+A+ L+GK +GD+ SV G++ EI+ +
Sbjct: 134 VAKLLMGKSVGDVASV----GDQELEIIAI 159
>gi|120435907|ref|YP_861593.1| GreA-like transcription elongation factor [Gramella forsetii
KT0803]
gi|117578057|emb|CAL66526.1| GreA-like transcription elongation factor [Gramella forsetii
KT0803]
Length = 166
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 15/152 (9%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT G +++QEL+ + E + +E R Q+L +G++
Sbjct: 30 YVTPNGLAELKQELKDLEYERAHVEAENDTEKR---------------RAQSLIDGKINL 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + A ++D D I FGA V L + SG + +QIVG EAD++ ++ +P
Sbjct: 75 LSERLQTARLLDSKDQPKDEIRFGARVKLTNETSGQLQEFQIVGVDEADIKKKKIAFVAP 134
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+A+ G+++G+ I + ++L + +
Sbjct: 135 IAKAVTGRKVGEEIDFKLGNEIRKLKVLGITY 166
>gi|220922797|ref|YP_002498099.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS
2060]
gi|219947404|gb|ACL57796.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS
2060]
Length = 153
Score = 85.3 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 67/150 (44%), Gaps = 26/150 (17%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G I+ EL E A D N + +
Sbjct: 30 VTPQGLALIEAELERLHAEH----------AALSPDDKAN---------LSRTSRDLRYW 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
A+VI+ + GD + FG+TV++ E+ G + Y IVG+ EAD G ++ +P+
Sbjct: 71 TARRNSAQVIEPTP--GDTVHFGSTVTV-EREDGTRLTYHIVGEDEADPAKGSIAYVAPL 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
ARAL GK+ GD+++V + EI++V
Sbjct: 128 ARALTGKQAGDVVTVA----DHEVEIIEVR 153
>gi|218506771|ref|ZP_03504649.1| transcription elongation factor GreA [Rhizobium etli Brasil 5]
Length = 60
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 44/59 (74%), Positives = 51/59 (86%)
Query: 99 SGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ ++K YQIVGDQEADV++G +SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 1 TEEEKTYQIVGDQEADVKAGRISISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 59
>gi|89897729|ref|YP_521216.1| hypothetical protein DSY4983 [Desulfitobacterium hafniense Y51]
gi|219670878|ref|YP_002461313.1| GreA/GreB family elongation factor [Desulfitobacterium hafniense
DCB-2]
gi|89337177|dbj|BAE86772.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219541138|gb|ACL22877.1| GreA/GreB family elongation factor [Desulfitobacterium hafniense
DCB-2]
Length = 138
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 29/157 (18%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +T+ +R R++K I++ R +G N +Y
Sbjct: 1 MSRKISITA---------------VDRERLLKLINKEREFGSAK-NKDY----------- 33
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ +LE+ + A+V+ + G+ I + + L + +G++ Y +V ++AD+ +
Sbjct: 34 --LKDLEHELNGADVVPSEKIPGNAITMNSRILLKDLETGEETVYTLVYPEDADLLEDKI 91
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI +P+ A++G GDII PGG +++ ++L+
Sbjct: 92 SILAPVGTAILGYLEGDIIDWKVPGGVVRFKVEKILY 128
>gi|108802197|ref|YP_642394.1| GreA/GreB family elongation factor [Mycobacterium sp. MCS]
gi|119871350|ref|YP_941302.1| GreA/GreB family elongation factor [Mycobacterium sp. KMS]
gi|126438179|ref|YP_001073870.1| GreA/GreB family elongation factor [Mycobacterium sp. JLS]
gi|108772616|gb|ABG11338.1| GreA/GreB family elongation factor [Mycobacterium sp. MCS]
gi|119697439|gb|ABL94512.1| GreA/GreB family elongation factor [Mycobacterium sp. KMS]
gi|126237979|gb|ABO01380.1| GreA/GreB family elongation factor [Mycobacterium sp. JLS]
Length = 153
Score = 84.9 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ +T + ++Q EL R I +EA G + A +Q +
Sbjct: 4 AQRVWMTPVAYRRLQDELTEL----RTLIA---NEAPDDGQENTVA-------VQRARQT 49
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ++ +++ A V + G G +++ +GD++ + + + S
Sbjct: 50 RIQQIHDLLLNAVVGEDPPDDG-VAEPGMVLTVRFDQTGDEETFLLGVRGAEYGDLEVYS 108
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
+SSP+ ALIG GD + P G
Sbjct: 109 VSSPLGEALIGARPGDRRTYEVPSG 133
>gi|91774873|ref|YP_544629.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
gi|91708860|gb|ABE48788.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
Length = 138
Score = 84.5 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 53/95 (55%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A LE+ + R+E + + D + + V L ++ +G + + +V +AD + +S+
Sbjct: 34 LARLEDELARSEEVPSEQVGADVVTMNSRVLLRDEANGHEMSCTLVFPSDADASANRISV 93
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+P+ A++G +GD+I PGG + Y IL++ +
Sbjct: 94 VAPLGTAILGYRVGDVIDWAMPGGVRQYRILKIDY 128
>gi|222106218|ref|YP_002547009.1| transcription elongation factor [Agrobacterium vitis S4]
gi|221737397|gb|ACM38293.1| transcription elongation factor [Agrobacterium vitis S4]
Length = 161
Score = 84.1 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 48/150 (32%), Positives = 81/150 (54%), Gaps = 20/150 (13%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G ++++ R + A ARA D++E Q A ++LN L
Sbjct: 31 VTESGLKALERQ--------RVQARDAYDAARAIEDVNERRR-QMAGPFRDLN-----YL 76
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + A+V+ ++ D ++FG TV+ ++ G + Y+IVG+ EAD ++G +S SP+
Sbjct: 77 EERLHTAQVM-PDPITADSVSFGTTVTFT-RDDGRVQTYRIVGEDEADPKAGSISYVSPV 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
ARALIGK +GD++S+ G++ EI +
Sbjct: 135 ARALIGKAVGDVVSL----GDQELEITAIS 160
>gi|148545953|ref|YP_001266055.1| GreA/GreB family elongation factor [Pseudomonas putida F1]
gi|148510011|gb|ABQ76871.1| GreA/GreB family elongation factor [Pseudomonas putida F1]
Length = 165
Score = 84.1 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 23/154 (14%)
Query: 6 PVTSKGFDKIQ---QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
VT+ G ++Q EL + E + GD A+ E
Sbjct: 29 YVTASGLRQLQTRVAELNALRSE--------LQAQGEQGDKQRLAD----------TERD 70
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ + A+V+ + S ++ G+ V V+ ++ ++VG+ EAD GL++
Sbjct: 71 LRYFSARVQSAQVV-PAATSHSKVQIGSRVRFVDT-HDQEQVVRLVGEDEADAGHGLINW 128
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ RAL+G GD + P GE+ E++++L
Sbjct: 129 GSPLGRALLGAGPGDEVVWRRPVGEQVIEVVEIL 162
>gi|218510131|ref|ZP_03508009.1| transcription elongation factor regulatory protein [Rhizobium etli
Brasil 5]
Length = 160
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 22/150 (14%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
VT G + EL++ + +A A D++E + A R+
Sbjct: 31 VTEAGLKAL--ELQF------QQAREAYDAANTIEDVNERRRHAANPLRDLRYLAARLRT 82
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP
Sbjct: 83 ARVM--------PNPTSADVVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISHVSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+AR L+GK GD + G + EI+ +
Sbjct: 134 VARLLMGKAAGDAVE----AGGQELEIIAI 159
>gi|297625162|ref|YP_003706596.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM
17093]
gi|297166342|gb|ADI16053.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM
17093]
Length = 154
Score = 83.7 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ VT +G ++Q L+ + + + + E + D +++ + AK+ + E
Sbjct: 1 MTREVYVTPEGMRRLQATLQE-EYKRLEEATRILQELTSSSDDYDDSGLEDAKQEKARLE 59
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV---QS 117
R+ +LE ++RA VI+ + + G+ V+L G++ Q+V EA+V
Sbjct: 60 RRIDQLEEQLSRAVVIEEHART--QADLGSIVTLQ--GDGEEITVQLVAPVEAEVISEDI 115
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+S SP+ +AL+G+++G+ V Y + +
Sbjct: 116 PHISNESPLGKALMGRKVGERFEVKLGRRTAAYTVQSIR 154
>gi|167947983|ref|ZP_02535057.1| Prokaryotic transcription elongation factor GreA/GreB [Endoriftia
persephone 'Hot96_1+Hot96_2']
Length = 67
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 52/66 (78%)
Query: 92 VSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYE 151
+ ++E ++ ++ +QIVGD EAD++SGL+S+SSPIARALIGK GD +++ PGG + +E
Sbjct: 1 MDVIELDNNEEHTFQIVGDDEADIKSGLISVSSPIARALIGKAEGDEVNLETPGGLREFE 60
Query: 152 ILQVLW 157
+L++ +
Sbjct: 61 VLEIRY 66
>gi|190892195|ref|YP_001978737.1| transcription elongation factor protein, GreA/GreB family
[Rhizobium etli CIAT 652]
gi|218516641|ref|ZP_03513481.1| transcription elongation factor regulatory protein [Rhizobium etli
8C-3]
gi|190697474|gb|ACE91559.1| transcription elongation factor protein, GreA/GreB family
[Rhizobium etli CIAT 652]
Length = 160
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
VT G + EL++ + +A A D++E + A R+
Sbjct: 31 VTEAGLKAL--ELQF------QQAREAYDAANTIEDVNERRRHAANPLRDLRYLAARLRT 82
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ + + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP
Sbjct: 83 AQVM--------PNPTSVDVVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYVSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+AR L+GK GD + G + EI+ +
Sbjct: 134 VARLLMGKAAGDAVE----AGGQELEIIAI 159
>gi|313497038|gb|ADR58404.1| GreA/GreB family elongation factor [Pseudomonas putida BIRD-1]
Length = 165
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 23/154 (14%)
Query: 6 PVTSKGFDKIQ---QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
VT+ G ++Q EL + E + GD A+ E
Sbjct: 29 YVTASGLRQLQTRVAELNALRSE--------LQAQGERGDKQRLAD----------TERD 70
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ + A+V+ + S ++ G+ V V+ ++ Q+VG+ EAD GL++
Sbjct: 71 LRYFSARVQSAQVV-PAATSHSKVQIGSRVRFVDAQD-QEQLVQLVGEDEADAGRGLINW 128
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ RAL+G GD + P GE+ E++++L
Sbjct: 129 GSPLGRALLGAGPGDEVVWQRPVGEQVIEVVEIL 162
>gi|167031723|ref|YP_001666954.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1]
gi|166858211|gb|ABY96618.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1]
Length = 165
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 23/154 (14%)
Query: 6 PVTSKGFDKIQQ---ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
VT+ G ++Q EL + SE A G+ + K+ E
Sbjct: 29 YVTASGLQQLQARVAELNALR-----------SELLAQGERGD-------KQRLADTERD 70
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ + A+V+ + S ++ G+ V V+ + ++VG+ EAD GL++
Sbjct: 71 LRYFSARVQSAQVV-PAAASRSKVQIGSRVRFVDAQD-QEHVVRLVGEDEADAGRGLINW 128
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ RAL+G GD + P G++ EIL++
Sbjct: 129 GSPLGRALLGAGPGDEVVWRRPVGDQVIEILEIE 162
>gi|26987412|ref|NP_742837.1| GreA/GreB family elongation factor [Pseudomonas putida KT2440]
gi|24982070|gb|AAN66301.1|AE016258_7 transcription elongation factor, putative [Pseudomonas putida
KT2440]
Length = 165
Score = 83.7 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 23/154 (14%)
Query: 6 PVTSKGFDKIQ---QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
VT+ G ++Q EL + E + GD A+ E
Sbjct: 29 YVTASGLRQLQTRVAELNALRSE--------LQAQGERGDKQRLAD----------TERD 70
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ + A+V+ + S ++ G+ V V+ ++ Q+VG+ EAD GL++
Sbjct: 71 LRYFSARVQSAQVV-PAATSHSKVQIGSRVRFVDAQD-QEQVVQLVGEDEADAGHGLINW 128
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ RAL+G GD + P GE+ E++++L
Sbjct: 129 GSPLGRALLGAGPGDEVVWRRPVGEQVIEVVEIL 162
>gi|209549738|ref|YP_002281655.1| transcription elongation factor regulatory protein [Rhizobium
leguminosarum bv. trifolii WSM2304]
gi|209535494|gb|ACI55429.1| GreA/GreB family elongation factor [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 160
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENA-EYQAAKELQNLNEGRMAE 65
VT G + EL++ + +A A D++E + R+
Sbjct: 31 VTEAGLKAL--ELQF------QQAREAYDAASTVEDVNERRRQAAGPLRDLRYLAARLRT 82
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP
Sbjct: 83 AQLM--------ADPASTDTVAFGSTVTFS-RDDGRVQTYRIVGEDEADPKAGSISYVSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+AR L+GK +GD++ G + EI+ +
Sbjct: 134 VARLLMGKAVGDVVE----TGGQELEIIAI 159
>gi|253701567|ref|YP_003022756.1| GreA/GreB family elongation factor [Geobacter sp. M21]
gi|251776417|gb|ACT18998.1| GreA/GreB family elongation factor [Geobacter sp. M21]
Length = 143
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 57/102 (55%)
Query: 56 QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
Q + + EL + RAEV+D + + D I + V L + +S ++ Y +V E+D+
Sbjct: 32 QTRDSKNLQELGEELVRAEVVDPAGIPPDVITMNSKVCLQDLDSKEELVYTLVFPNESDL 91
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SG +SI +P+ A+IG GD I+ PGG K ++ +VL+
Sbjct: 92 ASGKISILAPVGTAMIGFRTGDSITWPVPGGMKNLKVKKVLY 133
>gi|254818888|ref|ZP_05223889.1| transcription elongation factor GreA [Mycobacterium intracellulare
ATCC 13950]
Length = 165
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 61/152 (40%), Gaps = 12/152 (7%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+I +T + + ++ EL + + + D + N + Q++ R
Sbjct: 5 QRIRMTPQDYTRLHDELAGLRSRRGAEVPDDLM------DYNPN-----RRARQSVWRAR 53
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ E+E +++ A V+ G +++ ++G+ + + D S+
Sbjct: 54 ICEIEGLLSHAVVVGEGAAFDPVAEAGMVLTIRYDDTGETETLLLGRPCPEDAGIKAYSM 113
Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEIL 153
+SP+ RA+ G GD PGG ++ +L
Sbjct: 114 ASPLGRAIAGARPGDQRFYAIPGGTGRSVTVL 145
>gi|327187956|gb|EGE55188.1| transcription elongation factor protein, GreA/GreB family
[Rhizobium etli CNPAF512]
Length = 160
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
VT G + EL++ + +A A D++E + A R+
Sbjct: 31 VTEAGLKAL--ELQF------QQAREAYDAANTIEDVNERRRHAANPLRDLRYLAARLRT 82
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ + + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP
Sbjct: 83 AQVM--------PNPTSVDVVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYVSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+AR L+GK GD + G + EI+ +
Sbjct: 134 VARLLMGKAAGDAVE----SGGQELEIIAI 159
>gi|303239530|ref|ZP_07326056.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2]
gi|302592908|gb|EFL62630.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2]
Length = 147
Score = 83.3 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
M K+ +T + ++ + L E E R + + EY + + E + L
Sbjct: 1 MQKKLTLTQQAYENL---LAHLVDFE---------ERRKHIIMLYFPEYNSQRVEFEVLI 48
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ ++ L++++ D S + + + + + + + NY ++ + D +
Sbjct: 49 DDYISALDDVVRNVSFSDKSGNDFPFVCLNSVIEVEDVENTETFNYMLILPEANDYGTNC 108
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
++I SP+ +AL+ K+ G+ +SVN P G Y I +
Sbjct: 109 ITILSPMGKALLCKKDGETVSVNTPSGVYRYRIKSIK 145
>gi|255035431|ref|YP_003086052.1| GreA/GreB family elongation factor [Dyadobacter fermentans DSM
18053]
gi|254948187|gb|ACT92887.1| GreA/GreB family elongation factor [Dyadobacter fermentans DSM
18053]
Length = 134
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 51/108 (47%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
Q A+ + N L + RA V++ + + I + V + E + + + IV
Sbjct: 20 QFAQTFPDNNSSETMSLAYELNRAVVVEDNELPAGSIRLNSYVKVRETTTNKEMAFSIVM 79
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++AD+ +SI +P+ ALIG G+ + P G + ++IL V +
Sbjct: 80 PKDADIAKQRISILTPMGAALIGLCKGETVEWKMPAGIRRFKILDVWY 127
>gi|83716392|ref|YP_439713.1| nucleoside diphosphate kinase regulator [Burkholderia thailandensis
E264]
gi|257142852|ref|ZP_05591114.1| nucleoside diphosphate kinase regulator, putative [Burkholderia
thailandensis E264]
gi|83650217|gb|ABC34281.1| nucleoside diphosphate kinase regulator, putative [Burkholderia
thailandensis E264]
Length = 132
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
++ RA++++ + + + + + L+++ +G + IV A+ + G +++ SP+
Sbjct: 33 LLERADIVEPDKIQANVVTMNSQIKLLDETAGQDMTWTIVYPDAANFEHGWLNVFSPVGM 92
Query: 129 ALIGKELGDIISVNAPGG-EKTYEILQVLW 157
AL+G G+ + V PGG + T +I+++++
Sbjct: 93 ALLGARRGERVKVTLPGGTDATLKIVEIVY 122
>gi|86358113|ref|YP_470005.1| transcription elongation factor regulatory protein [Rhizobium etli
CFN 42]
gi|86282215|gb|ABC91278.1| transcription elongation factor protein [Rhizobium etli CFN 42]
Length = 160
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 15/136 (11%)
Query: 30 IIKAISEARAYGDLSENAEYQAAKELQNLNEGRM---------AELENIITRAEVIDIST 80
+ +A A A Y A ++++NE R L + A++I
Sbjct: 31 VTEAGLRALELQFQQARAAYDTAIAIEDVNERRRQAANPLRDLRYLSARLRTAQLI-PDP 89
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
S D +AFG TV+ ++ G + Y++VG+ EAD ++G +S SP+A+ L+GK +GD++
Sbjct: 90 TSADVVAFGLTVTFT-RDDGRVQTYRLVGEDEADPKAGSISYVSPVAQLLMGKAVGDVVE 148
Query: 141 VNAPGGEKTYEILQVL 156
G + EI+ +
Sbjct: 149 ----TGGQELEIIAIS 160
>gi|15806968|ref|NP_295693.1| transcription elongation factor [Deinococcus radiodurans R1]
gi|6459759|gb|AAF11523.1|AE002035_6 transcription elongation factor [Deinococcus radiodurans R1]
Length = 161
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 77/160 (48%), Gaps = 6/160 (3%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ +T +GF+++++ L Q + + E +E+ + AK + E
Sbjct: 4 TKQVRLTREGFERLEKALEQEQN-RLNEATRILQEQMETSADNEDTGLEDAKREKMNIEA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--- 118
R+ ELE+ + RA +I+ +G R+ GA V L + S Q+V EA + G
Sbjct: 63 RIDELEDTLARATLIE-DQENGGRVELGAIVQLSNETSKKDMKVQVVSAAEAAMVGGSIT 121
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+S SP+ R L+G++ G+ V GG++ Y++ + +
Sbjct: 122 RISEESPVGRELMGRKKGESFVVTLEGGKQMKYKVKGIEY 161
>gi|295134424|ref|YP_003585100.1| GreA-like transcription elongation factor [Zunongwangia profunda
SM-A87]
gi|294982439|gb|ADF52904.1| GreA-like transcription elongation factor [Zunongwangia profunda
SM-A87]
Length = 166
Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 15/152 (9%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT G++ +++E R + E + +E+R + + +G++
Sbjct: 30 YVTPFGYEALEKEQRDLESERANTTSENETESR---------------RAKAVIDGKLKL 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L A +I + D + FGA V L + + +QIVG EA+V+ ++ +P
Sbjct: 75 LAERRASARIIHPNQQPDDEVRFGAHVKLKNHTANSIQQFQIVGVDEANVKQQKIAFVAP 134
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IA+A+ G ++G+ + EIL + +
Sbjct: 135 IAKAVTGLKVGEKAEFKLGTETRILEILDITY 166
>gi|227820950|ref|YP_002824920.1| transcription elongation factor regulatory protein [Sinorhizobium
fredii NGR234]
gi|227339949|gb|ACP24167.1| putative transcription elongation factor [Sinorhizobium fredii
NGR234]
Length = 160
Score = 82.6 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 78/150 (52%), Gaps = 20/150 (13%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G ++ +LR + + S A A D +E QAA L++L
Sbjct: 31 VTKAGLKALESQLRQAR--------EGYSAASAIEDANERRR-QAAGPLRDL-----RYF 76
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A+++ SG+ +AFG+TV+ ++ G + Y+IVG+ EAD + G +S SP+
Sbjct: 77 AERVRTAQLV-PDPTSGETVAFGSTVTFS-RDDGRVQTYRIVGEDEADPKLGSISYVSPV 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
AR L+GK G+++S+ G++ EI+ +
Sbjct: 135 ARILLGKANGEVVSI----GDQELEIVAIS 160
>gi|188583529|ref|YP_001926974.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001]
gi|179347027|gb|ACB82439.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001]
Length = 154
Score = 82.6 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 25/151 (16%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT +G +I+ E+ + +E + A++ R
Sbjct: 29 YVTPEGLARIEAEVARLE-----------AELSGLSPQQDKADHARLSRDLRYWSARKNS 77
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E + GD + FGATV+++ + ++ ++IVG+ EAD +G +S +P
Sbjct: 78 AEL---------VEAFEGDTVRFGATVTVL-REDDTRQTFRIVGEDEADPATGSISYVAP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ARAL GK +GD ++VN + +EI ++
Sbjct: 128 LARALTGKGVGDTVTVN----DHEFEIAEIR 154
>gi|307319133|ref|ZP_07598563.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
gi|306895240|gb|EFN25996.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
Length = 160
Score = 82.2 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 24/152 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G + EL + +AR D + + + E + + G + EL
Sbjct: 31 VTETGLKAL--ELH-------------LQQAREAFDAT--STIEDVNERRRQSAGPLREL 73
Query: 67 ENIITRAEV--IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
R + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S S
Sbjct: 74 RYFAERVRTAQLVPDPASFDVVAFGSTVTFS-RDDGRVQKYRIVGEDEADPKAGSISYVS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+AR L+GK +GD+ SV G++ EIL +
Sbjct: 133 PVARVLMGKSVGDVASV----GDQELEILAIS 160
>gi|167578153|ref|ZP_02371027.1| nucleoside diphosphate kinase regulator, putative [Burkholderia
thailandensis TXDOH]
gi|167616284|ref|ZP_02384919.1| nucleoside diphosphate kinase regulator, putative [Burkholderia
thailandensis Bt4]
Length = 132
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
++ RA++++ + + + + + L+++ +G + IV A+ + G +++ SP+
Sbjct: 33 LLERADIVEPDKIQANVVTMNSQIKLLDETAGQDMTWTIVYPDAANFEHGRLNVFSPVGM 92
Query: 129 ALIGKELGDIISVNAPGG-EKTYEILQVLW 157
AL+G G+ + V PGG + T +I+++++
Sbjct: 93 ALLGARRGERVKVTLPGGTDATLKIVEIVY 122
>gi|28493647|ref|NP_787808.1| transcription elongation factor [Tropheryma whipplei str. Twist]
gi|28476689|gb|AAO44777.1| transcription elongation factor [Tropheryma whipplei str. Twist]
Length = 172
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 5/155 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ ++ + + EL R I K I +AR+ GDL EN Y AAKE Q EGR+
Sbjct: 16 ETWLSKEAHSVLVVELEELVTTGRKEIAKRIEQARSEGDLRENGGYSAAKEEQARIEGRI 75
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGLVSI 122
+L++++ A V G + G V+ G ++ + + + A S
Sbjct: 76 QQLQDLLRHARVGQAPKARG-VVEPGVVVTAR--IGGSERRFLLGNREIAHTSSLATYSE 132
Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
SS I +A++G + G I +P G IL+V
Sbjct: 133 SSAIGQAILGLKEGSEIECKSPTGALIKVAILKVE 167
>gi|269137850|ref|YP_003294550.1| nucleoside diphosphate kinase regulator [Edwardsiella tarda EIB202]
gi|267983510|gb|ACY83339.1| nucleoside diphosphate kinase regulator [Edwardsiella tarda EIB202]
gi|304557903|gb|ADM40567.1| Regulator of nucleoside diphosphate kinase [Edwardsiella tarda
FL6-60]
Length = 136
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E + A Q LNE + RA+++ + M D +
Sbjct: 3 RPAIIINELDAERLDRLLERPAFAAQPVAQALNE--------ELDRAQLLAPAAMPADVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + N+ ++ +V D +S+ +PI AL+G +GD I P G
Sbjct: 55 TMNSRVRFRDLNTNEEHVRTLVYPHLQDSAEDGLSVMAPIGAALLGLRVGDAIRWTLPNG 114
Query: 147 EKT-YEILQVLW 157
+T E+L +L+
Sbjct: 115 NQTHIEVLALLY 126
>gi|241205105|ref|YP_002976201.1| transcription elongation factor regulatory protein [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240858995|gb|ACS56662.1| GreA/GreB family elongation factor [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 160
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 70/135 (51%), Gaps = 15/135 (11%)
Query: 30 IIKAISEARAYGDLSENAEYQAAKELQNLNEGRM---------AELENIITRAEVIDIST 80
+ +A +A Y AA ++++NE R L + A+++ S
Sbjct: 31 VTEAGLKALELQFQQAREAYDAASPIEDVNERRRQAASPLRDLRYLTARLRTAQLM-PSP 89
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP+AR L+GK +GD++
Sbjct: 90 TSIDTVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYVSPVARLLMGKAVGDMVE 148
Query: 141 VNAPGGEKTYEILQV 155
G + EI+ +
Sbjct: 149 ----TGGQELEIIAI 159
>gi|28572840|ref|NP_789620.1| transcription elongation factor GreA [Tropheryma whipplei TW08/27]
gi|28410973|emb|CAD67358.1| transcription elongation factor GreA [Tropheryma whipplei TW08/27]
Length = 162
Score = 81.8 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 5/155 (3%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
+ ++ + + EL R I K I +AR+ GDL EN Y AAKE Q EGR+
Sbjct: 6 ETWLSKEAHSVLVVELEELVTTGRKEIAKRIEQARSEGDLRENGGYSAAKEEQARIEGRI 65
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGLVSI 122
+L++++ A V G + G V+ G ++ + + + A S
Sbjct: 66 QQLQDLLRHARVGQAPKARG-VVEPGVVVTAR--IGGSERRFLLGNREIAHTSSLATYSE 122
Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
SS I +A++G + G I +P G IL+V
Sbjct: 123 SSAIGQAILGLKEGSEIECKSPTGALIKVAILKVE 157
>gi|16262532|ref|NP_435325.1| transcription elongation factor regulatory protein [Sinorhizobium
meliloti 1021]
gi|307300722|ref|ZP_07580497.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
gi|14523141|gb|AAK64737.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306904256|gb|EFN34841.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
Length = 160
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 24/152 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G + EL + +AR D + + + E + + G + EL
Sbjct: 31 VTETGLKAL--ELH-------------LQQAREAFDAT--STIEDVNERRRQSAGPLREL 73
Query: 67 ENIITRAEV--IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
R + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S S
Sbjct: 74 RYFAERVRTAQLVPDPASFDVVAFGSTVTFS-RDDGRVQKYRIVGEDEADPKAGSISYVS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+AR L+GK +GD+ SV G++ EIL +
Sbjct: 133 PVARVLMGKSVGDVASV----GDQELEILAIS 160
>gi|300770814|ref|ZP_07080692.1| transcription elongation factor GreA [Sphingobacterium spiritivorum
ATCC 33861]
gi|300762371|gb|EFK59189.1| transcription elongation factor GreA [Sphingobacterium spiritivorum
ATCC 33861]
Length = 79
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 48/78 (61%)
Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
S + ++ + V + K +G + YQ+V + EAD++SG +S+ SPIA+ L+GK GD
Sbjct: 1 SKLDTSKVLALSIVRIKNKKNGSEMTYQLVSETEADLKSGKISVKSPIAQGLLGKSKGDT 60
Query: 139 ISVNAPGGEKTYEILQVL 156
++ P G+ +EI+++
Sbjct: 61 ATIEVPAGKIEFEIMEIS 78
>gi|218662438|ref|ZP_03518368.1| transcription elongation factor regulatory protein [Rhizobium etli
IE4771]
Length = 160
Score = 81.4 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 20/149 (13%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G + EL+++Q E I + + N R+
Sbjct: 31 VTEAGLKAL--ELQFQQAREAYDATNTIEDVNERRRQAANP-----LRDLRYLAARLRTA 83
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + S + +AFG TV+ ++ G + Y+IVG+ EAD ++G +S SP+
Sbjct: 84 QLM--------PYPTSVNVVAFGNTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYVSPV 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AR L+GK +GD + G + EI+ +
Sbjct: 135 ARLLMGKAVGDAVE----AGGQELEIIAI 159
>gi|300023335|ref|YP_003755946.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525156|gb|ADJ23625.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans
ATCC 51888]
Length = 152
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 24/150 (16%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G I+ E++ Q + ++ AR D + A A R+A
Sbjct: 27 VTPEGLALIEGEIKRLQ--------EDLNAARESDDRNAIA---RASHDLRYWSQRLATA 75
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + +AFG+ V+L E++ G + ++IVG+ EAD G +S SP+
Sbjct: 76 E--------LQPPASDASVVAFGSRVTL-ERDDGRMQKFRIVGEDEADPAKGSISYVSPL 126
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
A+AL+GK GD + G EI+++
Sbjct: 127 AQALLGKAAGDTVK----AGSGEAEIIKIE 152
>gi|116252606|ref|YP_768444.1| transcription elongation factor regulatory protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115257254|emb|CAK08349.1| putative transcription elongation factor [Rhizobium leguminosarum
bv. viciae 3841]
Length = 160
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 20/149 (13%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G + EL+++Q E I + + N R+
Sbjct: 31 VTEAGLKAL--ELQFQQAREAYDAASPIEDVNERRRQAANP-----LRDLRYLAARLRTA 83
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP+
Sbjct: 84 QLM--------PAATSIDTVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYVSPV 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AR L+GK +GD + G + EI+ +
Sbjct: 135 ARLLMGKAVGDAVE----TGGQELEIIAI 159
>gi|134299378|ref|YP_001112874.1| GreA/GreB family elongation factor [Desulfotomaculum reducens MI-1]
gi|134052078|gb|ABO50049.1| GreA/GreB family elongation factor [Desulfotomaculum reducens MI-1]
Length = 137
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 30/157 (19%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M KI +TS +++++ IIK A +
Sbjct: 1 MERKIYITSADKERLEK-----------LIIKEKEFNPASKEY----------------- 32
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ LE + A+V+ + D I + V L + ++ ++ Y +V +AD+ +
Sbjct: 33 --LKSLEEELKLAQVVPSKEIPQDVITMNSKVLLKDLDADEELTYSLVYPADADLLEDKI 90
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SI +P+ A++G +GD+++ P G ++ +L+
Sbjct: 91 SILAPVGTAILGYRVGDVVNWKVPDGVVQLKVENILY 127
>gi|289810362|ref|ZP_06540991.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 65
Score = 81.4 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 46/65 (70%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL ENAEY AA+E Q EG
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60
Query: 62 RMAEL 66
R+ ++
Sbjct: 61 RIKDI 65
>gi|116749867|ref|YP_846554.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans
MPOB]
gi|116698931|gb|ABK18119.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans
MPOB]
Length = 141
Score = 81.0 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LE + +AEV+ + D + + V + + ++G + Y +V EADV+ +S+
Sbjct: 37 LQVLEEELRKAEVVAARNIPRDTVTMNSKVRVKDLDTGIETIYHLVFPGEADVKQNRISV 96
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+PI ALIG +GD+I N P G K I ++L+
Sbjct: 97 LAPIGTALIGYAVGDVIQWNVPAGTKKLRIEEILY 131
>gi|34497951|ref|NP_902166.1| nucleoside diphosphate kinase regulator [Chromobacterium violaceum
ATCC 12472]
gi|34103806|gb|AAQ60167.1| nucleoside diphosphate kinase regulator [Chromobacterium violaceum
ATCC 12472]
Length = 134
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 42 DLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101
D A E + GR LE + RA+V+D M + + ++V + G
Sbjct: 13 DYDRLAALLENCEHDHPVAGR---LEAELERADVVDPQAMPSNVVTMNSSVRIR-LGDGQ 68
Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+K +V ++AD + G +S+ +PI AL+G G + P G +L++ +
Sbjct: 69 EKQLTLVYPRDADSEQGRISVLAPIGAALLGLSTGQSMQWPTPSGHTELTVLEITY 124
>gi|91976219|ref|YP_568878.1| transcription elongation factor regulatory protein
[Rhodopseudomonas palustris BisB5]
gi|91682675|gb|ABE38977.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
BisB5]
Length = 160
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 22/150 (14%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR-MAE 65
VT+ G ++ +L+ + A A+A D++E + Q R
Sbjct: 31 VTAAGMKALEAQLQAAR--------DACEAAKAIEDVNE-------RRRQEAIPSRDARY 75
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A++I + D +AFG+TV+ + G + Y+IVG+ EAD + G +S SP
Sbjct: 76 FATRVRTAQLI-ADPTTADVVAFGSTVTFKRAD-GRVQTYRIVGEDEADPKVGSISFVSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+AR L+GK +GD+ A GE+ EI+ +
Sbjct: 134 VARLLMGKAVGDV----AGAGEQELEIIAI 159
>gi|167565571|ref|ZP_02358487.1| regulator of nucleoside diphosphate kinase [Burkholderia
oklahomensis EO147]
Length = 132
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 51 AAKELQNLNEGRMAEL-ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
A E R E+ + ++ RA++++ + + + + + + L+++ +G + IV
Sbjct: 14 ARLERHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLIDETAGQDMTWTIVY 73
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
A+ + G +++ SP+ AL+G G+ + V PGG + T +I ++++
Sbjct: 74 PDAANFEQGRLNVFSPVGMALLGARCGEQVKVTLPGGADATLKIAEIVY 122
>gi|192360518|ref|YP_001983831.1| regulator of nucleoside diphosphate kinase [Cellvibrio japonicus
Ueda107]
gi|190686683|gb|ACE84361.1| regulator of nucleoside diphosphate kinase [Cellvibrio japonicus
Ueda107]
Length = 180
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI-ITRAEVID 77
L + IS N++YQ +L N+ AE +I I RA ++
Sbjct: 48 LEKLKMVATTETSLVIS----------NSDYQRLVQLIEDNDSPAAEALDIEIGRATLVA 97
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+ + D +A + V+ + +SG++K Q+V +A+V +SI SP+ ALIG +G
Sbjct: 98 DAQLPADVVAMDSEVTFEDLDSGEQKTIQLVFPAQANVDQLKISILSPVGSALIGLRIGS 157
Query: 138 IISVNAPGGE-KTYEILQVL 156
I P G+ + +++ V
Sbjct: 158 SIDWPVPQGKVRRLKVIAVK 177
>gi|262369483|ref|ZP_06062811.1| transcription elongation factor GreB [Acinetobacter johnsonii
SH046]
gi|262315551|gb|EEY96590.1| transcription elongation factor GreB [Acinetobacter johnsonii
SH046]
Length = 100
Score = 81.0 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG-DQEADVQSGLVSISSPI 126
+ +ID S +I FGA V + + G++K +IVG D+ D +SI SP+
Sbjct: 3 KRLEELRIIDFSEEQAGKIYFGAWVEIEN-DEGEQKTLRIVGVDEIYDHHPQHISIDSPM 61
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
ARAL+ K++ D I V P G+K + + + +
Sbjct: 62 ARALLSKQVDDEIEVLTPTGKKHWYVNSIRY 92
>gi|229817907|ref|ZP_04448189.1| hypothetical protein BIFANG_03193 [Bifidobacterium angulatum DSM
20098]
gi|229784807|gb|EEP20921.1| hypothetical protein BIFANG_03193 [Bifidobacterium angulatum DSM
20098]
Length = 114
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 58/111 (52%), Gaps = 6/111 (5%)
Query: 44 SENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK 103
SEN Y AA+E Q +N+GR+ EL + A+++ + ++ G+ V+L +G +K
Sbjct: 1 SENGGYHAAREAQRVNQGRIEELTFKLRHAKIL--TAPPAGKVGDGSLVTL--DMNGREK 56
Query: 104 NYQIVGDQEA-DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEI 152
+ + A ++S SPI A+ G ++GD +S AP G E + I
Sbjct: 57 VFVLGSHDLAIATDQAIISPESPIGAAIYGAKVGDTVSYKAPNGREISVTI 107
>gi|331644106|ref|ZP_08345235.1| transcription elongation factor GreB (Transcript cleavage
factorgreB) [Escherichia coli H736]
gi|331036400|gb|EGI08626.1| transcription elongation factor GreB (Transcript cleavage
factorgreB) [Escherichia coli H736]
Length = 114
Score = 80.6 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
FGA V + + G ++IVG E + +SI SP+ARAL+ KE+GD+ VN P G
Sbjct: 42 FFGAWVEIEN-DDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAG 100
Query: 147 EKTYEILQVLWI 158
E ++ + + ++
Sbjct: 101 EASWYVNAIEYV 112
>gi|316932410|ref|YP_004107392.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
DX-1]
gi|315600124|gb|ADU42659.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
DX-1]
Length = 134
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 24 QEERPRIIKAISEARAYGDLSENA--EYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81
+ +RP I +A G L+E A Y A E R + V S
Sbjct: 6 RTQRPPITLRSRDAERLGQLAEVAAQRYPATAEFLAGEVARAS----------VAPDSAP 55
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
+ + ++ + +G +K+ +V EADV++G +SI +PI ALIG +G IS
Sbjct: 56 LPGIVCMESALTFRDDTTGKEKHVTLVYPTEADVEAGRISILTPIGAALIGLSVGQSISF 115
Query: 142 NAPGGE-KTYEILQVL 156
P GE ++ +L V
Sbjct: 116 ETPSGERRSLTVLSVS 131
>gi|170740603|ref|YP_001769258.1| GreA/GreB family elongation factor [Methylobacterium sp. 4-46]
gi|168194877|gb|ACA16824.1| GreA/GreB family elongation factor [Methylobacterium sp. 4-46]
Length = 153
Score = 80.6 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 26/150 (17%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G I+ EL +E A + + ++L+ R +
Sbjct: 30 VTPQGLALIEAELERLH-----------AEHAALSPDDKAGLARTNRDLRYWTARRNS-- 76
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
A+VI+ + GD + FG+T +VE+ G ++ Y++VG+ EAD G ++ +P+
Sbjct: 77 ------AQVIEPTP--GDTVHFGST-VVVEREDGSRQTYRVVGEDEADPARGSIAYVAPL 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
ARAL GK GD++ V + EI++V
Sbjct: 128 ARALTGKLAGDVVRVA----DHDVEIIEVR 153
>gi|218680300|ref|ZP_03528197.1| transcription elongation factor regulatory protein [Rhizobium etli
CIAT 894]
Length = 160
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 22/150 (14%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENA-EYQAAKELQNLNEGRMAE 65
VT G + EL++ + +A A D++E + + R+
Sbjct: 31 VTEAGLRAL--ELQF------QQAREAYDAANTIDDVNERRRQAAGPLRDLRYLKARLRT 82
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ + S D +AFG+TV+ ++ G + Y+IVG+ EAD ++G +S SP
Sbjct: 83 AQLM--------ADASSTDAVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYVSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+AR L+GK +GD+ G + EI+ +
Sbjct: 134 VARLLMGKAVGDVAE----TGGQELEIIAI 159
>gi|254563199|ref|YP_003070294.1| GreA/GreB family transcription elongation factor [Methylobacterium
extorquens DM4]
gi|254270477|emb|CAX26477.1| putative GreA/GreB family transcription elongation factor
[Methylobacterium extorquens DM4]
Length = 154
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 68/150 (45%), Gaps = 25/150 (16%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +I+ E+ + +E + A++ R
Sbjct: 30 VTPEGLAQIEAEVARLE-----------AELSGLSPQQDKADHTRVSRDLRYWTARKNSA 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E I GD + FGATV+++ + ++ ++IVG+ EAD +G +S +P+
Sbjct: 79 EPI---------EAFEGDTVRFGATVTVL-REDDTRQTFRIVGEDEADPSAGSISYVAPL 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
A+AL GK +GD ++VN + +EI ++
Sbjct: 129 AQALTGKGVGDTVTVN----DHEFEIAEIR 154
>gi|295677010|ref|YP_003605534.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
gi|295436853|gb|ADG16023.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
Length = 134
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 7/117 (5%)
Query: 42 DLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101
D++ +Y AA L++++ RA ++D + D + + +L++ SG+
Sbjct: 14 DVTRLEKYAAANAKLQH------MLDDVLERAVIVDSHDIPADVVTMNSQATLIDTASGE 67
Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
+ + +V AD G +++ SP AL+G G+ I P G++ +I ++L+
Sbjct: 68 QMTWTVVYPPNADFAQGRLNVFSPAGLALLGARRGESIRFTPPSGDQQVLKIDKILY 124
>gi|218532092|ref|YP_002422908.1| GreA/GreB family elongation factor [Methylobacterium
chloromethanicum CM4]
gi|218524395|gb|ACK84980.1| GreA/GreB family elongation factor [Methylobacterium
chloromethanicum CM4]
Length = 154
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 25/150 (16%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +I+ E+ + +E + A++ R
Sbjct: 30 VTPEGLAQIEAEVARLE-----------AELSGLSPQQDKADHIRVSRDLRYWTARKNSA 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + GD + FGATV+++ + ++ ++IVG+ EAD +G +S +P+
Sbjct: 79 E---------PVEAFEGDTVRFGATVTVL-REDDTRQTFRIVGEDEADPSAGSISYVAPL 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
A+AL GK +GD ++VN + +EI ++
Sbjct: 129 AQALTGKGVGDTVTVN----DHEFEIAEIR 154
>gi|163853276|ref|YP_001641319.1| transcription elongation factor GreA/GreB domain-containing protein
[Methylobacterium extorquens PA1]
gi|163664881|gb|ABY32248.1| transcription elongation factor GreA/GreB domain protein
[Methylobacterium extorquens PA1]
Length = 154
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 25/150 (16%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +I+ E+ + +E + A++ R
Sbjct: 30 VTPEGLTQIEAEVARLE-----------AELSGLSPQQDKADHTRVSRDLRYWTARKNSA 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + GD + FGATV+++ + ++ ++IVG+ EAD +G +S +P+
Sbjct: 79 E---------PVEAFEGDTVRFGATVTVL-REDDTRQTFRIVGEDEADPSAGSISYVAPL 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
A+AL GK +GD ++VN + +EI ++
Sbjct: 129 AQALTGKGVGDTVTVN----DHEFEIAEIR 154
>gi|118594647|ref|ZP_01551994.1| transcription elongation factor, putative [Methylophilales
bacterium HTCC2181]
gi|118440425|gb|EAV47052.1| transcription elongation factor, putative [Methylophilales
bacterium HTCC2181]
Length = 166
Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 70/152 (46%), Gaps = 16/152 (10%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T G +++ L E + ++ + +K+ + E +
Sbjct: 29 YITPNGLKQLKNILDTLDAERQTLMLL---------------DDSMSKQKKMRIERDIRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ I A +I + +++ FGA + L ++ G+ ++Y+IVG+ EAD+ +S SP
Sbjct: 74 YASRIKTAILIHPDKQAENKVLFGALIELEDEK-GETESYEIVGEDEADLALRKISYVSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A++++G LGD +++ P T I + +
Sbjct: 133 LAKSVMGNSLGDEVTLIKPTATVTLTIKNITY 164
>gi|239831415|ref|ZP_04679744.1| Transcription elongation factor greA [Ochrobactrum intermedium LMG
3301]
gi|239823682|gb|EEQ95250.1| Transcription elongation factor greA [Ochrobactrum intermedium LMG
3301]
Length = 157
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 23/148 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G I+ E+ Q+E + E A +S + Y A+
Sbjct: 29 VTPTGLKMIEDEIARLQRELADANVA--GERSAVARISRDLRYWTARRENAEL------- 79
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ D + FG TV L + G + + IVG+ EAD +G +S +P+
Sbjct: 80 ----------SVPAADSDVVRFGMTVELENLDDGKVRRWTIVGEDEADPSNGKISHVAPV 129
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
A L GK +GD++ +N +EIL
Sbjct: 130 AILLFGKPVGDVVKIN----NVEWEILS 153
>gi|261341234|ref|ZP_05969092.1| regulator of nucleoside diphosphate kinase [Enterobacter
cancerogenus ATCC 35316]
gi|288316534|gb|EFC55472.1| regulator of nucleoside diphosphate kinase [Enterobacter
cancerogenus ATCC 35316]
Length = 136
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP+II +A L E EY + LNE + RA++ +M D +
Sbjct: 3 RPKIIINELDAERIDRLLEKPEYASLPVADALNE--------ELDRAQMCTPESMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V+ +G++ +V + + +S+ +P+ AL+G GD I + PGG
Sbjct: 55 TMNSQVTFRNLTTGEELTRTLVYPAQMTDSATQLSVLAPVGAALLGLRTGDTIHWDLPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L +L+
Sbjct: 115 ASTHLEVLALLY 126
>gi|91202773|emb|CAJ72412.1| similar to regulator of nucleoside diphosphate kinase [Candidatus
Kuenenia stuttgartiensis]
Length = 139
Score = 79.5 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 56/106 (52%)
Query: 52 AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
A+E + +A L + RAEV+ + D + + V L + ++ +K Y +V +
Sbjct: 24 AEEFGGQDRKDLASLAEELERAEVVSSKDVPADVVTMNSKVVLRDLSTSEKMTYVLVFPK 83
Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A++ +G +S+ +P+ A++G GD++ + P G + I VL+
Sbjct: 84 DANIAAGAISVLAPVGTAILGYAKGDVVEWSVPSGVRRIRIDDVLY 129
>gi|169830342|ref|YP_001716324.1| GreA/GreB family elongation factor [Candidatus Desulforudis
audaxviator MP104C]
gi|169637186|gb|ACA58692.1| GreA/GreB family elongation factor [Candidatus Desulforudis
audaxviator MP104C]
Length = 154
Score = 79.5 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 70/157 (44%), Gaps = 6/157 (3%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M I +++ + +L + ++ + + A A G ++ E++ +
Sbjct: 1 MASIIELSNHAYKYFTGQLAQMEAQKL-ALFEDFFTAYAPGVPIDD-----RTEVRLFLD 54
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ + ++ RA V++ G + + + + G + +++V E + +G V
Sbjct: 55 DYLNRVRELLARARVVEGQCPPLPLTLIGCDIRVEDLDRGHSEMFRVVSPYEINPAAGHV 114
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S SP+ R L+ KE G +++V APGG Y ++ V +
Sbjct: 115 SFLSPVGRGLLLKEPGQVLAVQAPGGTFRYRVVSVTY 151
>gi|39933943|ref|NP_946219.1| putative nucleoside diphosphate kinase regulator [Rhodopseudomonas
palustris CGA009]
gi|192289362|ref|YP_001989967.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
TIE-1]
gi|39647790|emb|CAE26310.1| putative nucleoside diphosphate kinase regulator [Rhodopseudomonas
palustris CGA009]
gi|192283111|gb|ACE99491.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
TIE-1]
Length = 134
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 24 QEERPRIIKAISEARAYGDLSENA--EYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81
+ +RP I +A G L+E A Y A + + RA V
Sbjct: 6 RTQRPPITIRSRDAERLGQLAEAAAQRYPATADFLA----------GEVARANVAPDHDP 55
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
+ + ++ + +G +K+ +V EADV++G +S+ +PI ALIG +G IS
Sbjct: 56 LPGIVCMESALTFRDDTTGKEKHVTLVYPTEADVEAGRISVLTPIGAALIGLSVGQSISF 115
Query: 142 NAPGGE-KTYEILQVL 156
P GE ++ +L V
Sbjct: 116 ETPSGERRSLTVLSVS 131
>gi|218673855|ref|ZP_03523524.1| transcription elongation factor regulatory protein [Rhizobium etli
GR56]
Length = 160
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 22/150 (14%)
Query: 7 VTSKGFDKIQQELRW-RQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT G ++ + + R+ + II+ ++E R R+
Sbjct: 31 VTEAGLKALELQFQQAREAYDAASIIEDVNERRRQTANP--------LRDLRYLAARLRT 82
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ + S D +AFG+TV+ ++ G + Y+IVG+ EA+ ++ +S SP
Sbjct: 83 AQLM--------PDPTSADVVAFGSTVTFR-RDDGRVQTYRIVGEDEAEPKAASISYLSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+AR L+GK GD + V G EI+ +
Sbjct: 134 VARLLMGKAAGDAVEV----GGHELEIIAI 159
>gi|256426014|ref|YP_003126667.1| GreA/GreB family elongation factor [Chitinophaga pinensis DSM 2588]
gi|256040922|gb|ACU64466.1| GreA/GreB family elongation factor [Chitinophaga pinensis DSM 2588]
Length = 131
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 47/89 (52%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ RA ++D ++ I + VS+ E NSG +++IV +AD++ +SI +P+
Sbjct: 42 YELNRAVIVDNESLPVGTIRLNSLVSVKEVNSGKVTDFRIVMPIDADIKQKKISILAPLG 101
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156
ALIG GD + P G K + +L V
Sbjct: 102 AALIGFRKGDEVEWKMPAGVKRFTVLNVQ 130
>gi|53721904|ref|YP_110889.1| transcription elongation factor [Burkholderia pseudomallei K96243]
gi|52212318|emb|CAH38342.1| putative transcription elongation factor [Burkholderia pseudomallei
K96243]
Length = 136
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 67/138 (48%), Gaps = 16/138 (11%)
Query: 23 QQEERPRIIK--AISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIST 80
+ R RI + + AR N YQ L+ ++ RA++++ +
Sbjct: 2 ETVMRNRIYQLTELDVARLEKHAERNPRYQE-------------MLDTLLERADIVEPNK 48
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
+ + + + + L+++ +G + + IV A+ + G +++ SP+ AL+G G+ +
Sbjct: 49 IQANVVTMNSQIKLLDETAGQDRAWTIVYPDAANFEQGRLNVFSPVGMALLGSRCGERVK 108
Query: 141 VNAPGG-EKTYEILQVLW 157
V PGG + T +I+++++
Sbjct: 109 VTLPGGADATLKIVEIVY 126
>gi|17987660|ref|NP_540294.1| transcription elongation factor GREB [Brucella melitensis bv. 1
str. 16M]
gi|148560110|ref|YP_001258556.1| transcription elongation factor GreA domain-containing protein
[Brucella ovis ATCC 25840]
gi|163842833|ref|YP_001627237.1| transcription elongation factor GreA [Brucella suis ATCC 23445]
gi|225627062|ref|ZP_03785100.1| Transcription elongation factor greA [Brucella ceti str. Cudo]
gi|225852085|ref|YP_002732318.1| Transcription elongation factor greA [Brucella melitensis ATCC
23457]
gi|254693324|ref|ZP_05155152.1| Transcription elongation factor greA [Brucella abortus bv. 3 str.
Tulya]
gi|254701352|ref|ZP_05163180.1| Transcription elongation factor greA [Brucella suis bv. 5 str. 513]
gi|254707727|ref|ZP_05169555.1| Transcription elongation factor greA [Brucella pinnipedialis
M163/99/10]
gi|254709691|ref|ZP_05171502.1| Transcription elongation factor greA [Brucella pinnipedialis B2/94]
gi|254712888|ref|ZP_05174699.1| Transcription elongation factor greA [Brucella ceti M644/93/1]
gi|254716758|ref|ZP_05178569.1| Transcription elongation factor greA [Brucella ceti M13/05/1]
gi|256031182|ref|ZP_05444796.1| Transcription elongation factor greA [Brucella pinnipedialis
M292/94/1]
gi|256044265|ref|ZP_05447169.1| Transcription elongation factor greA [Brucella melitensis bv. 1
str. Rev.1]
gi|256060689|ref|ZP_05450853.1| Transcription elongation factor greA [Brucella neotomae 5K33]
gi|256113099|ref|ZP_05453976.1| Transcription elongation factor greA [Brucella melitensis bv. 3
str. Ether]
gi|256159272|ref|ZP_05457075.1| Transcription elongation factor greA [Brucella ceti M490/95/1]
gi|256254589|ref|ZP_05460125.1| Transcription elongation factor greA [Brucella ceti B1/94]
gi|256264405|ref|ZP_05466937.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
melitensis bv. 2 str. 63/9]
gi|256368997|ref|YP_003106503.1| transcription elongation factor GreA domain protein [Brucella
microti CCM 4915]
gi|260168317|ref|ZP_05755128.1| transcription elongation factor GreA domain protein [Brucella sp.
F5/99]
gi|260563619|ref|ZP_05834105.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
melitensis bv. 1 str. 16M]
gi|261213571|ref|ZP_05927852.1| GreA/GreB family elongation factor [Brucella abortus bv. 3 str.
Tulya]
gi|261218555|ref|ZP_05932836.1| GreA/GreB family elongation factor [Brucella ceti M13/05/1]
gi|261221763|ref|ZP_05936044.1| GreA/GreB family elongation factor [Brucella ceti B1/94]
gi|261315220|ref|ZP_05954417.1| GreA/GreB family elongation factor [Brucella pinnipedialis
M163/99/10]
gi|261317221|ref|ZP_05956418.1| GreA/GreB family elongation factor [Brucella pinnipedialis B2/94]
gi|261320596|ref|ZP_05959793.1| GreA/GreB family elongation factor [Brucella ceti M644/93/1]
gi|261324679|ref|ZP_05963876.1| GreA/GreB family elongation factor [Brucella neotomae 5K33]
gi|261751889|ref|ZP_05995598.1| GreA/GreB family elongation factor [Brucella suis bv. 5 str. 513]
gi|261757777|ref|ZP_06001486.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
F5/99]
gi|265988260|ref|ZP_06100817.1| GreA/GreB family elongation factor [Brucella pinnipedialis
M292/94/1]
gi|265990676|ref|ZP_06103233.1| GreA/GreB family elongation factor [Brucella melitensis bv. 1 str.
Rev.1]
gi|265994508|ref|ZP_06107065.1| GreA/GreB family elongation factor [Brucella melitensis bv. 3 str.
Ether]
gi|265997727|ref|ZP_06110284.1| GreA/GreB family elongation factor [Brucella ceti M490/95/1]
gi|294851925|ref|ZP_06792598.1| transcription elongation factor regulatory protein [Brucella sp.
NVSL 07-0026]
gi|17983373|gb|AAL52558.1| transcription elongation factor greb [Brucella melitensis bv. 1
str. 16M]
gi|148371367|gb|ABQ61346.1| transcription elongation factor GreA domain protein [Brucella ovis
ATCC 25840]
gi|163673556|gb|ABY37667.1| Transcription elongation factor greA [Brucella suis ATCC 23445]
gi|225617897|gb|EEH14941.1| Transcription elongation factor greA [Brucella ceti str. Cudo]
gi|225640450|gb|ACO00364.1| Transcription elongation factor greA [Brucella melitensis ATCC
23457]
gi|255999155|gb|ACU47554.1| transcription elongation factor GreA domain protein [Brucella
microti CCM 4915]
gi|260153635|gb|EEW88727.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
melitensis bv. 1 str. 16M]
gi|260915178|gb|EEX82039.1| GreA/GreB family elongation factor [Brucella abortus bv. 3 str.
Tulya]
gi|260920347|gb|EEX87000.1| GreA/GreB family elongation factor [Brucella ceti B1/94]
gi|260923644|gb|EEX90212.1| GreA/GreB family elongation factor [Brucella ceti M13/05/1]
gi|261293286|gb|EEX96782.1| GreA/GreB family elongation factor [Brucella ceti M644/93/1]
gi|261296444|gb|EEX99940.1| GreA/GreB family elongation factor [Brucella pinnipedialis B2/94]
gi|261300659|gb|EEY04156.1| GreA/GreB family elongation factor [Brucella neotomae 5K33]
gi|261304246|gb|EEY07743.1| GreA/GreB family elongation factor [Brucella pinnipedialis
M163/99/10]
gi|261737761|gb|EEY25757.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
F5/99]
gi|261741642|gb|EEY29568.1| GreA/GreB family elongation factor [Brucella suis bv. 5 str. 513]
gi|262552195|gb|EEZ08185.1| GreA/GreB family elongation factor [Brucella ceti M490/95/1]
gi|262765621|gb|EEZ11410.1| GreA/GreB family elongation factor [Brucella melitensis bv. 3 str.
Ether]
gi|263001460|gb|EEZ14035.1| GreA/GreB family elongation factor [Brucella melitensis bv. 1 str.
Rev.1]
gi|263094699|gb|EEZ18478.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
melitensis bv. 2 str. 63/9]
gi|264660457|gb|EEZ30718.1| GreA/GreB family elongation factor [Brucella pinnipedialis
M292/94/1]
gi|294820514|gb|EFG37513.1| transcription elongation factor regulatory protein [Brucella sp.
NVSL 07-0026]
gi|326408580|gb|ADZ65645.1| Transcription elongation factor greA [Brucella melitensis M28]
gi|326538299|gb|ADZ86514.1| transcription elongation factor greA [Brucella melitensis M5-90]
Length = 156
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 23/148 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G +I EL Q + I E A +S + Y A+
Sbjct: 28 VTPAGLKQIDDELARLQHDLAEANIA--GERSAVARISRDLRYWMARRETAEL------- 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ D + FG TV L + G + + IVG+ EAD G +S +P+
Sbjct: 79 ----------SVPAPDSDVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHVAPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+ L GK +GD++ + G +EI+
Sbjct: 129 SILLFGKPVGDVVKI---NGT-EWEIVS 152
>gi|306842173|ref|ZP_07474842.1| transcription elongation factor GREB [Brucella sp. BO2]
gi|306287760|gb|EFM59191.1| transcription elongation factor GREB [Brucella sp. BO2]
Length = 156
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 23/148 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G +I EL Q + I E A +S + Y A+
Sbjct: 28 VTPAGLKQIDDELARLQHDLAEANIA--GERSAVARISRDLRYWTARRETAEL------- 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ D + FG TV L + G + + IVG+ EAD G +S +P+
Sbjct: 79 ----------SVPAPDSDVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHVAPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+ L GK +GD++ + G +EI+
Sbjct: 129 SILLFGKPVGDVVKI---NGT-EWEIVS 152
>gi|147676876|ref|YP_001211091.1| hypothetical protein PTH_0541 [Pelotomaculum thermopropionicum SI]
gi|146272973|dbj|BAF58722.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
Length = 150
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 53/107 (49%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
+ E +NL E + L+ +I A I+ + G+ V + + + Y IV
Sbjct: 38 KERNEFENLIENYIQRLDRLIRNASKSKIADNKVPFVTIGSEVEIQNLSEQEVYKYFIVN 97
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
++V+ G +S SP+ ++L+ K++GD + V APGG Y+I +
Sbjct: 98 PFYSEVREGHISFLSPVGKSLLLKKVGDEVEVKAPGGVFRYKIKSIR 144
>gi|323526690|ref|YP_004228843.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1001]
gi|323383692|gb|ADX55783.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1001]
Length = 139
Score = 79.1 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
N L++++ RA ++D + + + + +LV++ SG++ + +V +AD
Sbjct: 28 GANARFQEMLDDVLERAVIVDSRDIPANVVTMNSQATLVDETSGEEMTWTVVYPPDADFT 87
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
G +++ SP+ AL+G + G+ I P G EK ++ ++L+
Sbjct: 88 HGRLNVFSPVGLALLGAKRGEQIRFMPPSGDEKVLKLAKILY 129
>gi|325109624|ref|YP_004270692.1| GreA/GreB family elongation factor [Planctomyces brasiliensis DSM
5305]
gi|324969892|gb|ADY60670.1| GreA/GreB family elongation factor [Planctomyces brasiliensis DSM
5305]
Length = 138
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 54/95 (56%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L + A+V++ + + + +T+ + E + + + Y +V + AD+ G +S+
Sbjct: 35 LQSLRGELDIAQVVNSEEVPPNVVTMNSTIRMREVRTREMETYTLVYPERADIAEGKLSV 94
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+PI A++G ++GDI+ N PGG ++I ++++
Sbjct: 95 LAPIGTAILGYQVGDIVEWNVPGGTIRFKIEELVF 129
>gi|328886579|emb|CCA59818.1| transcription elongation factor, putative [Streptomyces venezuelae
ATCC 10712]
Length = 155
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/150 (22%), Positives = 66/150 (44%), Gaps = 5/150 (3%)
Query: 6 PVTSKGFDKIQQELRWRQQE-ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
P+++ + +++EL + E E + GD ++ A+ + R+
Sbjct: 7 PISAAAREALERELDELRTEREAVAVTLRDGGGDETGDRADQADELQRGTELTRLDRRID 66
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL + A V D + G+TV++ ++ G + QI G+ A + + +V+ S
Sbjct: 67 ELHGRLREAAV--AGAPRTDAVGVGSTVTVRFED-GTETTVQI-GEVAAVLDATMVTADS 122
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQ 154
P+ AL+G GD ++ P G T ++
Sbjct: 123 PLGGALLGHRAGDTVTYVTPQGRTTAVVVS 152
>gi|167572677|ref|ZP_02365551.1| regulator of nucleoside diphosphate kinase [Burkholderia
oklahomensis C6786]
Length = 132
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/109 (22%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 51 AAKELQNLNEGRMAEL-ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
A E R E+ + ++ RA++++ + + + + + + L+++ +G + IV
Sbjct: 14 ARLERHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLIDETAGQDMAWTIVY 73
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
A+ + G +++ SP+ AL+G G+ + V PGG + T +I ++++
Sbjct: 74 PDAANFEQGRLNVFSPVGMALLGARCGEQVKVTLPGGADATLKIAEIVY 122
>gi|332716346|ref|YP_004443812.1| Transcription elongation factor [Agrobacterium sp. H13-3]
gi|325063031|gb|ADY66721.1| Transcription elongation factor [Agrobacterium sp. H13-3]
Length = 163
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 20/150 (13%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G ++Q+L+ + +A A A D++E A +
Sbjct: 34 VTEAGLKALEQQLQLAR--------EACETANAVEDVNERRRLSANP------LRDIRYF 79
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A+++ S + +AFG+ V+ ++ G + ++IVG+ EAD +G +S SP+
Sbjct: 80 AERVRTAQLM-PSPPADGTVAFGSVVTFS-RDDGRTQRFRIVGEDEADPANGSMSYVSPV 137
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
A L+GK GD++S+ G K EI++V
Sbjct: 138 AGLLMGKSAGDVVSL----GGKEIEIIEVT 163
>gi|126458551|ref|YP_001075250.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1106a]
gi|134279304|ref|ZP_01766017.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 305]
gi|167723223|ref|ZP_02406459.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei DM98]
gi|167742194|ref|ZP_02414968.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 14]
gi|167849216|ref|ZP_02474724.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei B7210]
gi|167906159|ref|ZP_02493364.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei NCTC 13177]
gi|167914483|ref|ZP_02501574.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 112]
gi|217418762|ref|ZP_03450269.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 576]
gi|237508824|ref|ZP_04521539.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei MSHR346]
gi|242312653|ref|ZP_04811670.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1106b]
gi|254300234|ref|ZP_04967680.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 406e]
gi|126232319|gb|ABN95732.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1106a]
gi|134249723|gb|EBA49804.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 305]
gi|157810014|gb|EDO87184.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 406e]
gi|217398066|gb|EEC38081.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 576]
gi|235001029|gb|EEP50453.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei MSHR346]
gi|242135892|gb|EES22295.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1106b]
Length = 132
Score = 78.7 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 65/134 (48%), Gaps = 16/134 (11%)
Query: 27 RPRIIK--AISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
R RI + + AR N YQ L+ ++ RA++++ + + +
Sbjct: 2 RNRIYQLTELDVARLEKHAERNPRYQE-------------MLDTLLERADIVEPNKIQAN 48
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
+ + + L+++ +G + IV A+ + G +++ SP+ AL+G G+ + V P
Sbjct: 49 VVTMNSQIKLLDETAGQDMAWTIVYPDAANFEQGRLNVFSPVGMALLGSRCGERVKVTLP 108
Query: 145 GG-EKTYEILQVLW 157
GG + T +I+++++
Sbjct: 109 GGADATLKIVEIVY 122
>gi|170750231|ref|YP_001756491.1| GreA/GreB family elongation factor [Methylobacterium radiotolerans
JCM 2831]
gi|170656753|gb|ACB25808.1| GreA/GreB family elongation factor [Methylobacterium radiotolerans
JCM 2831]
Length = 157
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 28/153 (18%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +I+ E+ ++E A D ++ AE R
Sbjct: 30 VTPEGLAQIEAEVARLEKEV------------ASLDPADKAEDSRIGRDLRYWAARKNTA 77
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNS---GDKKNYQIVGDQEADVQSGLVSIS 123
++++ GD + FG+TV++V ++ ++ ++IVG+ EAD G +S
Sbjct: 78 -------QLVEPK--GGDTVQFGSTVTVVREDESGKETRQTFRIVGEDEADPHKGSISYV 128
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+P+ARA+ GK +GD++ VN E+L++
Sbjct: 129 APLARAITGKTIGDVVEVNG----HEVEVLEIR 157
>gi|207111191|ref|ZP_03245353.1| transcription elongation factor GreA [Helicobacter pylori
HPKX_438_CA4C1]
Length = 60
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 97 KNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
++ + +Y IVG E+D GL+S SPIA++LIGK GD +S+ P GE +EIL +
Sbjct: 1 LDNDKEFSYTIVGSVESDPAKGLISFGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDI 59
>gi|325277076|ref|ZP_08142731.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51]
gi|324097783|gb|EGB95974.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51]
Length = 165
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 17/151 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT+ G ++Q+ ++E A + + K+ E +
Sbjct: 29 YVTASGLRQLQE---------------RVAELNALRSDLQAQGERVDKQRLADTERDLRY 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ A+V+ +T S ++ G+ V V+ ++VG+ EAD GL++ SP
Sbjct: 74 FSARVQSAQVVPPAT-SHSKVQIGSRVRFVDAQD-QAHEVRLVGEDEADAGRGLINWGSP 131
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ RAL+G GD + P GE E+ V+
Sbjct: 132 LGRALLGAGPGDEVVWQRPVGELVIEVTDVI 162
>gi|182414436|ref|YP_001819502.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
gi|177841650|gb|ACB75902.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
Length = 143
Score = 78.7 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 51/89 (57%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
++L + ++R V+D + + I G+TV + + SG+ + Y +V ++A+V + +S+
Sbjct: 30 SQLRSELSRGVVVDATALPPTAIRLGSTVEIEDLESGEIETYTLVLPEQANVDARKLSVL 89
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEI 152
+PI A+IG G ++ + PGG + I
Sbjct: 90 APIGTAVIGCLQGAEVAWSTPGGTRRLRI 118
>gi|299783423|gb|ADJ41421.1| Transcription elongation factor greA (Transcript cleavage factor
greA) [Lactobacillus fermentum CECT 5716]
Length = 69
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
G ++ E + ++Y IVG+ E+D SG +S SP+A+ L+G ++GD + + P G
Sbjct: 1 MGREITFQELPDEEPESYTIVGESESDPLSGKISNESPMAKGLLGHKVGDTVEIEIPNGS 60
Query: 148 KTYEILQVL 156
+IL V
Sbjct: 61 MKVKILSVK 69
>gi|307069596|ref|YP_003878073.1| putative transcription elongation factor GreA [Candidatus Zinderia
insecticola CARI]
gi|306482856|gb|ADM89727.1| putative transcription elongation factor GreA [Candidatus Zinderia
insecticola CARI]
Length = 157
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 2/137 (1%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G+ K+ E + ++ +IK I AR+ GDLSEN++++ AKE + + E ++
Sbjct: 2 KNLITKNGY-KLFIEKINNFKNKKKNLIKEIEIARSNGDLSENSDFKIAKEKKYILEKKI 60
Query: 64 AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
LE I ++ID + + D+I F + L + K QIVGD E++ + +SI
Sbjct: 61 LILEKKINNFKIIDPLYIKNKDKIFFSCKLKLFCYLNKKKIKLQIVGDCESNFKKNKISI 120
Query: 123 SSPIARALIGKELGDII 139
S +++ LI K++ D I
Sbjct: 121 LSKLSKVLIKKKINDKI 137
>gi|332557443|ref|ZP_08411765.1| Transcription elongation factor [Rhodobacter sphaeroides WS8N]
gi|332275155|gb|EGJ20470.1| Transcription elongation factor [Rhodobacter sphaeroides WS8N]
Length = 164
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 16/149 (10%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +Q L + RA D + AA+ E R+
Sbjct: 28 VTPRGLADLQARLL--------ATQARLRALRAREDRLDRLPEAAAERDIRYLEARI--- 76
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
A ++D +T D +AFG V++ + +G + ++I G+ EA + ++ +P+
Sbjct: 77 ----ASAILVDPATQPLDEVAFGLAVTVED-EAGRRTVWEITGEDEAQATARRIAPQAPL 131
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+G LG+ + P GE T + +
Sbjct: 132 ARALMGARLGEKVVWTRPAGEVTLTVTGI 160
>gi|159185796|ref|NP_357050.2| transcription elongation factor regulatory protein [Agrobacterium
tumefaciens str. C58]
gi|159140930|gb|AAK89835.2| transcription elongation factor [Agrobacterium tumefaciens str.
C58]
Length = 160
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 22/150 (14%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAE 65
VT G ++Q+L+ + +A A A D++E A+ R+
Sbjct: 31 VTQAGLKALEQQLQLAR--------QACEAANAIEDINERRRLSASPLRDMRYFAERVRT 82
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ + + +AFG+ V+ ++ G + ++IVG+ EAD +G +S SP
Sbjct: 83 AQLM--------PDPQADGVVAFGSLVTFS-RDDGRTQRFRIVGEDEADPAAGTMSYVSP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
+AR L+GK +GD++S+ G + EI+ V
Sbjct: 134 VARVLMGKTIGDVVSL---AG-REIEIIDV 159
>gi|118469742|ref|YP_890510.1| transcription elongation factor GreA [Mycobacterium smegmatis str.
MC2 155]
gi|118171029|gb|ABK71925.1| transcription elongation factor GreA [Mycobacterium smegmatis str.
MC2 155]
Length = 157
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 57/146 (39%), Gaps = 15/146 (10%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
+I ++ + +++QQEL + + A D EN +Q + R
Sbjct: 5 QRIWMSPQAHERLQQELSTLR---------ELIATEAASDSDEN-----QVAVQRARQAR 50
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ++ +++ AEV + G G +++ S D + + + + S+
Sbjct: 51 IQQIHDLLLHAEVGETPPNDG-VAEPGMVLTVRWDGSDDTETFLLGVRGAEYGDLEVYSV 109
Query: 123 SSPIARALIGKELGDIISVNAPGGEK 148
SP+ A++G G+ P G +
Sbjct: 110 QSPLGSAILGARPGEHREYETPTGAR 135
>gi|312602260|ref|YP_004022105.1| regulator of nucleoside diphosphate kinase [Burkholderia
rhizoxinica HKI 454]
gi|312169574|emb|CBW76586.1| Regulator of nucleoside diphosphate kinase [Burkholderia
rhizoxinica HKI 454]
Length = 195
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
G L+ ++ RA V++ + + + +TV+L +SG++ + +V AD G +
Sbjct: 88 GYQTMLDALLERAAVVEATDIDPSVVTMNSTVTLSNPSSGERMTWTVVYPPNADFSQGRL 147
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
++ SP+ AL+G GD + V P G +T ++ Q+++
Sbjct: 148 NVFSPVGLALLGATPGDELRVTPPSGAPQTLKVEQIVF 185
>gi|23501445|ref|NP_697572.1| transcription elongation factor GreA domain-containing protein
[Brucella suis 1330]
gi|161618529|ref|YP_001592416.1| transcription elongation factor GreA [Brucella canis ATCC 23365]
gi|254703897|ref|ZP_05165725.1| transcription elongation factor GreA [Brucella suis bv. 3 str. 686]
gi|261754547|ref|ZP_05998256.1| GreA/GreB family elongation factor [Brucella suis bv. 3 str. 686]
gi|23347347|gb|AAN29487.1| transcription elongation factor GreA domain protein [Brucella suis
1330]
gi|161335340|gb|ABX61645.1| Transcription elongation factor greA [Brucella canis ATCC 23365]
gi|261744300|gb|EEY32226.1| GreA/GreB family elongation factor [Brucella suis bv. 3 str. 686]
Length = 156
Score = 78.3 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 23/148 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G +I EL Q + I E A +S + Y A+
Sbjct: 28 VTPAGLKQIDDELARLQHDLAEANIA--GERSAVARISRDLRYWMARRETAEL------- 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + FG TV L + G + + IVG+ EAD G +S +P+
Sbjct: 79 ----------SVPAPDSHVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHVAPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+ L GK +GD++ + G +EI+
Sbjct: 129 SILLFGKPVGDVVKI---NGT-EWEIVS 152
>gi|53717174|ref|YP_105968.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei ATCC 23344]
gi|67643290|ref|ZP_00442037.1| transcription elongation factor [Burkholderia mallei GB8 horse 4]
gi|76817365|ref|YP_337627.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1710b]
gi|121598026|ref|YP_989947.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei SAVP1]
gi|124381514|ref|YP_001024430.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei NCTC 10229]
gi|126445041|ref|YP_001062285.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 668]
gi|126447434|ref|YP_001078147.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei NCTC 10247]
gi|167000163|ref|ZP_02265983.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei PRL-20]
gi|167819370|ref|ZP_02451050.1| putative nucleoside diphosphate kinase regulator [Burkholderia
pseudomallei 91]
gi|167827743|ref|ZP_02459214.1| putative nucleoside diphosphate kinase regulator [Burkholderia
pseudomallei 9]
gi|167897815|ref|ZP_02485217.1| putative nucleoside diphosphate kinase regulator [Burkholderia
pseudomallei 7894]
gi|167922382|ref|ZP_02509473.1| putative nucleoside diphosphate kinase regulator [Burkholderia
pseudomallei BCC215]
gi|226197683|ref|ZP_03793258.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei Pakistan 9]
gi|254174295|ref|ZP_04880957.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei ATCC 10399]
gi|254183333|ref|ZP_04889925.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1655]
gi|254189966|ref|ZP_04896475.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei Pasteur 52237]
gi|254193144|ref|ZP_04899579.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei S13]
gi|254200813|ref|ZP_04907178.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei FMH]
gi|254204783|ref|ZP_04911136.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei JHU]
gi|254265246|ref|ZP_04956111.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1710a]
gi|254357032|ref|ZP_04973307.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei 2002721280]
gi|52423144|gb|AAU46714.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei ATCC 23344]
gi|76581838|gb|ABA51312.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1710b]
gi|121225824|gb|ABM49355.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei SAVP1]
gi|124289534|gb|ABM98803.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei NCTC 10229]
gi|126224532|gb|ABN88037.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 668]
gi|126240288|gb|ABO03400.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei NCTC 10247]
gi|147748425|gb|EDK55500.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei FMH]
gi|147754369|gb|EDK61433.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei JHU]
gi|148026059|gb|EDK84182.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei 2002721280]
gi|157937643|gb|EDO93313.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei Pasteur 52237]
gi|160695341|gb|EDP85311.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei ATCC 10399]
gi|169649898|gb|EDS82591.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei S13]
gi|184213866|gb|EDU10909.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1655]
gi|225930292|gb|EEH26304.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei Pakistan 9]
gi|238524601|gb|EEP88033.1| transcription elongation factor [Burkholderia mallei GB8 horse 4]
gi|243063816|gb|EES46002.1| putative nucleoside diphosphate kinase regulator [Burkholderia
mallei PRL-20]
gi|254216248|gb|EET05633.1| regulator of nucleoside diphosphate kinase [Burkholderia
pseudomallei 1710a]
Length = 132
Score = 78.3 bits (192), Expect = 4e-13, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 66/134 (49%), Gaps = 16/134 (11%)
Query: 27 RPRIIK--AISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
R RI + + AR N YQ L+ ++ RA++++ + + +
Sbjct: 2 RNRIYQLTELDVARLEKHAERNPRYQE-------------MLDTLLERADIVEPNKIQAN 48
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
+ + + L+++ +G + + IV A+ + G +++ SP+ AL+G G+ + V P
Sbjct: 49 VVTMNSQIKLLDETAGQDRAWTIVYPDAANFEQGRLNVFSPVGMALLGSRCGERVKVTLP 108
Query: 145 GG-EKTYEILQVLW 157
GG + T +I+++++
Sbjct: 109 GGADATLKIVEIVY 122
>gi|221638413|ref|YP_002524675.1| transcription elongation factor [Rhodobacter sphaeroides KD131]
gi|221159194|gb|ACM00174.1| Transcription elongation factor [Rhodobacter sphaeroides KD131]
Length = 164
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 16/149 (10%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +Q L + RA D + AA+ E R+
Sbjct: 28 VTPRGLADLQARLL--------ATQARLRALRAREDRLDRLPEAAAERDIRYLEARI--- 76
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
A ++D + D +AFG V++ + +G + ++I G+ EA + ++ +P+
Sbjct: 77 ----ASAILVDPAAQPLDEVAFGLAVTVED-EAGRRTVWEITGEDEAQATARRIAPQAPL 131
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+G LG+ + P GE T + +
Sbjct: 132 ARALMGARLGEKVVWTRPAGEVTLTVTGI 160
>gi|154499214|ref|ZP_02037592.1| hypothetical protein BACCAP_03209 [Bacteroides capillosus ATCC
29799]
gi|150272054|gb|EDM99280.1| hypothetical protein BACCAP_03209 [Bacteroides capillosus ATCC
29799]
Length = 163
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 5/144 (3%)
Query: 15 IQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
++ EL + +E + A A GD SENAE+Q A + + L N +
Sbjct: 23 LRTELESVQLRLKEEQDAAQR---ASAMGDRSENAEWQIANDNIARYTVSIMSLVNTLDT 79
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
+ S ++ G+T+ +V++ +I + + G +S ++P+ A++G
Sbjct: 80 YKKFSASYTPTGKVMVGSTLKVVDRRHNSTLYIKIYPAGLGNAKIGAISTATPLGSAVLG 139
Query: 133 KELGDIISVNAPGGEKTYEILQVL 156
K G + V AP G+ Y I +VL
Sbjct: 140 KTAGTEVIVKAPLGDIPYYIEEVL 163
>gi|77462558|ref|YP_352062.1| putative transcription elongation factor [Rhodobacter sphaeroides
2.4.1]
gi|126461492|ref|YP_001042606.1| GreA/GreB family elongation factor [Rhodobacter sphaeroides ATCC
17029]
gi|77386976|gb|ABA78161.1| putative transcription elongation factor [Rhodobacter sphaeroides
2.4.1]
gi|126103156|gb|ABN75834.1| GreA/GreB family elongation factor [Rhodobacter sphaeroides ATCC
17029]
Length = 164
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 16/149 (10%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +Q L + RA D + AA+ E R+
Sbjct: 28 VTPRGLADLQARLL--------ATQARLRALRAREDRLDRLPEAAAERDIRYLEARI--- 76
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
A ++D + D +AFG V++ + +G + ++I G+ EA + ++ +P+
Sbjct: 77 ----ASAILVDPAAQPLDEVAFGLAVTVED-EAGRRTVWEITGEDEAQATARRIAPQAPL 131
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+G LG+ + P GE T + +
Sbjct: 132 ARALMGARLGEKVVWTRPAGEVTLTVTGI 160
>gi|306845170|ref|ZP_07477746.1| transcription elongation factor GREB [Brucella sp. BO1]
gi|306274329|gb|EFM56136.1| transcription elongation factor GREB [Brucella sp. BO1]
Length = 156
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 58/148 (39%), Gaps = 23/148 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G +I EL Q + I E A +S + Y A+
Sbjct: 28 VTPAGLKQIDDELVRLQHDLAEANIA--GERSAVARISRDLRYWMARRETAEL------- 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ D + FG TV L + G + + IVG+ EAD G +S +P+
Sbjct: 79 ----------SVPAPGSDVVRFGMTVELENLDDGSTRCWTIVGEDEADPSRGKISHVAPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+ L GK +GD++ + G +EI+
Sbjct: 129 SILLFGKPVGDVVKI---NGT-EWEIVS 152
>gi|260566855|ref|ZP_05837325.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
suis bv. 4 str. 40]
gi|260156373|gb|EEW91453.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
suis bv. 4 str. 40]
Length = 156
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 23/148 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G +I EL Q + I E A +S + Y A+
Sbjct: 28 VTPAGLKQIDDELARLQHDLSEANIA--GERSAVARISRDLRYWMARRETAEL------- 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + FG TV L + G + + IVG+ EAD G +S +P+
Sbjct: 79 ----------SVPAPDSHVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHVAPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+ L GK +GD++ + G +EI+
Sbjct: 129 SILLFGKPVGDVVKI---NGT-EWEIVS 152
>gi|255596472|ref|XP_002536547.1| Transcription elongation factor greA, putative [Ricinus communis]
gi|223519331|gb|EEF25837.1| Transcription elongation factor greA, putative [Ricinus communis]
Length = 196
Score = 77.2 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 22/151 (14%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR-MAE 65
VT G ++ +L+ + KA A A D++E + Q R
Sbjct: 67 VTEAGLKALELQLQDAR--------KAYEAASAIEDINE-------RRRQTAIPLRDARY 111
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ AEV+ + S + + FG+TV+ + G + Y+IVG+ EAD ++G +S SP
Sbjct: 112 FAERVRTAEVM-PAPASSEVVVFGSTVTYS-REDGRVQKYRIVGEDEADPKAGSISYVSP 169
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+AR L+GK +GDI+++ G++ EI +
Sbjct: 170 VARLLMGKTVGDILTL----GKEELEITAIE 196
>gi|62289525|ref|YP_221318.1| transcription elongation factor [Brucella abortus bv. 1 str. 9-941]
gi|82699455|ref|YP_414029.1| transcription elongation factor GreA/GreB [Brucella melitensis
biovar Abortus 2308]
gi|189023782|ref|YP_001934550.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus S19]
gi|237815022|ref|ZP_04594020.1| Transcription elongation factor greA [Brucella abortus str. 2308 A]
gi|254688843|ref|ZP_05152097.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus bv. 6 str. 870]
gi|254696973|ref|ZP_05158801.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus bv. 2 str. 86/8/59]
gi|254729874|ref|ZP_05188452.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus bv. 4 str. 292]
gi|256257090|ref|ZP_05462626.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus bv. 9 str. C68]
gi|260545721|ref|ZP_05821462.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus NCTC 8038]
gi|260754325|ref|ZP_05866673.1| GreA/GreB family elongation factor [Brucella abortus bv. 6 str.
870]
gi|260757544|ref|ZP_05869892.1| GreA/GreB family elongation factor [Brucella abortus bv. 4 str.
292]
gi|260761369|ref|ZP_05873712.1| GreA/GreB family elongation factor [Brucella abortus bv. 2 str.
86/8/59]
gi|260883350|ref|ZP_05894964.1| GreA/GreB family elongation factor [Brucella abortus bv. 9 str.
C68]
gi|297247937|ref|ZP_06931655.1| transcription elongation factor regulatory protein [Brucella
abortus bv. 5 str. B3196]
gi|62195657|gb|AAX73957.1| transcription elongation factor [Brucella abortus bv. 1 str. 9-941]
gi|82615556|emb|CAJ10536.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
melitensis biovar Abortus 2308]
gi|189019354|gb|ACD72076.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus S19]
gi|237789859|gb|EEP64069.1| Transcription elongation factor greA [Brucella abortus str. 2308 A]
gi|260097128|gb|EEW81003.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus NCTC 8038]
gi|260667862|gb|EEX54802.1| GreA/GreB family elongation factor [Brucella abortus bv. 4 str.
292]
gi|260671801|gb|EEX58622.1| GreA/GreB family elongation factor [Brucella abortus bv. 2 str.
86/8/59]
gi|260674433|gb|EEX61254.1| GreA/GreB family elongation factor [Brucella abortus bv. 6 str.
870]
gi|260872878|gb|EEX79947.1| GreA/GreB family elongation factor [Brucella abortus bv. 9 str.
C68]
gi|297175106|gb|EFH34453.1| transcription elongation factor regulatory protein [Brucella
abortus bv. 5 str. B3196]
Length = 156
Score = 77.2 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 23/148 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VTS G +I EL Q + I E A +S + Y A+
Sbjct: 28 VTSAGLKQIDDELARLQHDLAEANIA--GERSAVARISRDLRYWMARRETAEL------- 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ D + FG TV L + G + + IVG+ EAD G +S +P+
Sbjct: 79 ----------SVPAPDSDVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHVAPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+ L GK +GD++ + G +EI+
Sbjct: 129 SILLFGKPVGDVVKI---NGT-EWEIVS 152
>gi|153010033|ref|YP_001371248.1| GreA/GreB family elongation factor [Ochrobactrum anthropi ATCC
49188]
gi|151561921|gb|ABS15419.1| GreA/GreB family elongation factor [Ochrobactrum anthropi ATCC
49188]
Length = 156
Score = 76.8 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 40/156 (25%), Positives = 63/156 (40%), Gaps = 39/156 (25%)
Query: 7 VTSKGFDKIQQELRWRQQE--------ERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
VT G I+ E+ Q+E ER I + + R + ENAE
Sbjct: 28 VTPTGLTMIEDEIARLQRELADANVAGERSAIARISRDLRYWTTRRENAE---------- 77
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
+ + D + FG TV L + G + + IVG+ EAD +G
Sbjct: 78 -----------------LSVPVPDSDVVRFGMTVELENLDDGKVRRWTIVGEDEADPSNG 120
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+S +P+A L GK +GD++ +N +EI+
Sbjct: 121 KISHVAPVAILLFGKPVGDVVKIN----NVEWEIVS 152
>gi|240140684|ref|YP_002965164.1| putative GreA/GreB family transcription elongation factor
[Methylobacterium extorquens AM1]
gi|240010661|gb|ACS41887.1| putative GreA/GreB family transcription elongation factor
[Methylobacterium extorquens AM1]
Length = 154
Score = 76.8 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 25/150 (16%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +I+ E+ + +E + A++ R
Sbjct: 30 VTPEGLAQIETEVARLE-----------AELSGLSPQQDKADHTRVSRDLRYWTARKNSA 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + GD + FGATV+++ + ++ ++IVG+ EAD +G +S +P+
Sbjct: 79 E---------PVEAFEGDTVRFGATVTVL-REDDTRQTFRIVGEDEADPAAGSISYVAPL 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
A++L GK +GD ++VN + +EI ++
Sbjct: 129 AQSLTGKGVGDTVTVN----DHEFEIAEIR 154
>gi|149926906|ref|ZP_01915165.1| nucleoside diphosphate kinase regulator [Limnobacter sp. MED105]
gi|149824458|gb|EDM83676.1| nucleoside diphosphate kinase regulator [Limnobacter sp. MED105]
Length = 122
Score = 76.8 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 43/90 (47%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL + AE I + D + + ++VE SG + +A+ G +S+ S
Sbjct: 19 ELNAALDNAEFIKPQDIPADVVTMNSLFTIVETESGSTNKLMLCYPSDAEPAKGYISVLS 78
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQ 154
P+ +L+G++ G + P GE+ + +++
Sbjct: 79 PVGASLLGRKAGTVAQWATPNGEQHFAVVK 108
>gi|86751649|ref|YP_488145.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
HaA2]
gi|86574677|gb|ABD09234.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
HaA2]
Length = 134
Score = 76.8 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
+RP I+ +A G L+E AA + L + RA V
Sbjct: 8 QRPPIVLRSRDAERLGQLAE-----AAAQRHP---ATADFLAGEVARAAVTPDGEPLPGI 59
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ + ++ ++++G +K +V +ADV++G +S+ +PI ALIG +G I+ P
Sbjct: 60 VCMDSELTFRDESTGKEKQVTLVYPPDADVEAGRISVLTPIGAALIGLSVGQSITFETPS 119
Query: 146 GE-KTYEILQVL 156
GE ++ +L V
Sbjct: 120 GERRSLTVLSVS 131
>gi|120405731|ref|YP_955560.1| GreA/GreB family elongation factor [Mycobacterium vanbaalenii
PYR-1]
gi|119958549|gb|ABM15554.1| GreA/GreB family elongation factor [Mycobacterium vanbaalenii
PYR-1]
Length = 159
Score = 76.8 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 14/154 (9%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
D + +T + + +++EL P D A++
Sbjct: 4 ADYVWMTPQAREDLEKELADLMAVPNPAGTDETERTDQVVD------AWLARKE------ 51
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ++ +++RA+ S G +++ ++GD + + + AD + + +
Sbjct: 52 RIRQIHELLSRAD-HSTSPADDGIAEPGMVLTVRFDDTGDTETFLLGTRGTADPELEVYT 110
Query: 122 ISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
++SP+ AL+G G+ S P G + +L
Sbjct: 111 VASPLGSALLGAVPGEQRSFRLPNGSIQQVTVLA 144
>gi|118581250|ref|YP_902500.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM
2379]
gi|118503960|gb|ABL00443.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM
2379]
Length = 142
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
+ AK + + + ELE + RA+V+ + D I + V L + +SG++ Y +V
Sbjct: 25 EGAKARVSRDSRNIVELEQELHRADVVAPDGIPPDVITMNSRVCLQDMDSGEELVYTLVF 84
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+A+++SG +S+ +P+ A+IG GD IS PGG
Sbjct: 85 PGDANLESGRISVLAPVGTAMIGYRTGDRISWPVPGGT 122
>gi|162450982|ref|YP_001613349.1| regulator of nucleoside diphosphate kinase [Sorangium cellulosum
'So ce 56']
gi|161161564|emb|CAN92869.1| regulator of nucleoside diphosphate kinase [Sorangium cellulosum
'So ce 56']
Length = 140
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 47/92 (51%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE I RA+V+ + + + + + V LV+ ++ ++ +V ADV+SG +S+ +P
Sbjct: 39 LEIEIERADVVKPADIPPNVVTMNSRVELVDLDTEERLCVTVVFPGNADVKSGRISVLAP 98
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ AL+G D + P + I ++ +
Sbjct: 99 MGLALLGCREADEVEWPTPSRTRRLRIERIAY 130
>gi|254785677|ref|YP_003073106.1| transcription elongation factor GreA [Teredinibacter turnerae
T7901]
gi|237684826|gb|ACR12090.1| transcription elongation factor GreA [Teredinibacter turnerae
T7901]
Length = 126
Score = 76.8 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL + A V+D + G R+ FG+ V++ + +++++QIV E+ GL+
Sbjct: 30 AELRTRLASATVVDNDDIMGGRVQFGSLVTVFSIDEEEEQSFQIVSSDESLSGRGLLDQR 89
Query: 124 SPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
SP+A+AL G G+++ V G YE+ +
Sbjct: 90 SPLAQALFGAREGEVVRVLLQNGSNCDYEVTHI 122
>gi|302389044|ref|YP_003824865.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM
16646]
gi|302199672|gb|ADL07242.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM
16646]
Length = 150
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 75/160 (46%), Gaps = 14/160 (8%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M ++ F+ + + L ++R + N+ + A+EL++L +
Sbjct: 1 MQRTYTLSKTAFEALIKHLADL----------EAGKSRLIDEHFSNSP-REARELEHLLD 49
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV---GDQEADVQS 117
+ ++ I+ + D + S + + V + + + + N+++V G+ +D +
Sbjct: 50 NYIKFMDEFISSVQQEDTADESFPYVVINSRVQVQDIENDETYNFRVVLPSGNIASDPEI 109
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
VS+ SP+ ++L+ K+ G+ + VNAPGG YEI + +
Sbjct: 110 YSVSVLSPVGKSLLLKKPGEKVQVNAPGGMFLYEIKAIYF 149
>gi|170695928|ref|ZP_02887067.1| GreA/GreB family elongation factor [Burkholderia graminis C4D1M]
gi|170139112|gb|EDT07301.1| GreA/GreB family elongation factor [Burkholderia graminis C4D1M]
Length = 139
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
N L++++ RA ++D + + + + +LV+++SG++ + +V +AD
Sbjct: 28 GANARFQEMLDDVLERAVIVDSREIPANVVTMNSQATLVDESSGEQMTWTVVYPPDADFA 87
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
G +++ SP+ AL+G + G+ I P G EK ++ ++L+
Sbjct: 88 HGRLNVFSPVGLALLGAKRGEHIHFMPPSGAEKVLKLEKILY 129
>gi|297617314|ref|YP_003702473.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus
DSM 12680]
gi|297145151|gb|ADI01908.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus
DSM 12680]
Length = 150
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 52/103 (50%)
Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
E + L E + +++ +I + + + + G+ V + + + Y+I+
Sbjct: 42 EFEILLENYIKQVDELIRKVKKSSKAGNKLPFVTIGSEVEIQNLSDKETHKYRIITPFRG 101
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
V+ G +S SP+ ++L+ +++GD+I V APGG Y+I +
Sbjct: 102 SVKDGDISYLSPVGKSLLLRKVGDVIEVKAPGGIFHYKIKSIR 144
>gi|316932887|ref|YP_004107869.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
DX-1]
gi|315600601|gb|ADU43136.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
DX-1]
Length = 174
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 24/151 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPR-IIKAISEAR-AYGDLSENAEYQAAKELQNLNEGRMA 64
VT+ G ++++L + +I+ ++E R A +A Y AA+
Sbjct: 45 VTAAGLAALEEQLAEAKAALEAAGLIEDVNERRRAEAIPLRDARYYAARVRTAQVM---- 100
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
S D IAFG+TV+ + G + Y+IVG+ EAD + G +S S
Sbjct: 101 -------------PDPASTDEIAFGSTVTFRRAD-GRVQTYRIVGEDEADPKQGTISFVS 146
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+AR+L+GK +GD++ G + E++ +
Sbjct: 147 PVARSLMGKSVGDVV----GKGAQELEVVGI 173
>gi|167839479|ref|ZP_02466163.1| nucleoside diphosphate kinase regulator, putative [Burkholderia
thailandensis MSMB43]
Length = 132
Score = 76.4 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
N L+ ++ RA++++ + + + + + L+++++G + IV A+ +
Sbjct: 22 RNPRYQEMLDTLLERADIVEPDKIQANVVTMNSQIKLLDESAGQDMIWTIVYPDAANFEQ 81
Query: 118 GLVSISSPIARALIGKELGDIISVNAPG-GEKTYEILQVLW 157
G +++ SP+ AL+G G+ + V PG + T +I+++++
Sbjct: 82 GRLNVFSPVGMALLGARRGERVKVTLPGAADATLKIVEIVY 122
>gi|146343253|ref|YP_001208301.1| transcription elongation factor regulatory protein [Bradyrhizobium
sp. ORS278]
gi|146196059|emb|CAL80086.1| putative transcription elongation factor (greB) (Transcript
cleavage factor greB) [Bradyrhizobium sp. ORS278]
Length = 174
Score = 76.0 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 24/151 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIK-AISEARAYGDLS-ENAEYQAAKELQNLNEGRMA 64
VT G ++ +L Q ++E R L +A Y AA+
Sbjct: 45 VTETGLKALEDQLHQAQAAYEAAQAIADVNERRRESALPLRDARYFAARLRTAQLM---- 100
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
S IAFG+TV+ + G + Y+IVG+ EAD + G +S S
Sbjct: 101 -------------PPPSSTAAIAFGSTVTFR-RGDGRTQTYRIVGEDEADPKHGTISHVS 146
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+AR L+GK GD++ V + EIL++
Sbjct: 147 PVARRLMGKTAGDVVEVTG----QELEILRI 173
>gi|254718708|ref|ZP_05180519.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
83/13]
gi|265983683|ref|ZP_06096418.1| GreA/GreB family elongation factor [Brucella sp. 83/13]
gi|306837756|ref|ZP_07470623.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
NF 2653]
gi|264662275|gb|EEZ32536.1| GreA/GreB family elongation factor [Brucella sp. 83/13]
gi|306407165|gb|EFM63377.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
NF 2653]
Length = 156
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 23/148 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VTS G +I EL Q + I E A +S + Y A+
Sbjct: 28 VTSAGLKQIDDELARLQHDLAEANIA--GERSAVARISRDLRYWTARRETAEL------- 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ D + FG TV L + G + + IVG+ EAD G +S +P+
Sbjct: 79 ----------SVPAPDSDVVRFGMTVELENLDDGSIRRWTIVGEDEADPSRGKISHVAPV 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
+ L GK +GD++ + G +EI+
Sbjct: 129 SILLFGKPVGDVVKI---NGT-EWEIVS 152
>gi|197104061|ref|YP_002129438.1| transcription elongation factor [Phenylobacterium zucineum HLK1]
gi|196477481|gb|ACG77009.1| transcription elongation factor [Phenylobacterium zucineum HLK1]
Length = 214
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 1/127 (0%)
Query: 31 IKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGA 90
K AR A+Y L + + L + RA V+ S + G+
Sbjct: 86 TKTRERARTPTVRVAEADYDRLLNLADHDGPGAELLARELDRAIVVREGEKSRPFVRLGS 145
Query: 91 TVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKT 149
TV ++ + + ++V AD+ + +S+ SP+ AL+G +GD S AP G +
Sbjct: 146 TVEYRDRLTEKVRTVELVPPDAADIDANRLSVLSPVGAALLGLSVGDTFSWTAPDGRPRV 205
Query: 150 YEILQVL 156
+ V
Sbjct: 206 VTVEAVR 212
>gi|254231364|ref|ZP_04924691.1| transcription elongation factor greA (transcript cleavage factor
greA ) [Mycobacterium tuberculosis C]
gi|124600423|gb|EAY59433.1| transcription elongation factor greA (transcript cleavage factor
greA ) [Mycobacterium tuberculosis C]
Length = 110
Score = 76.0 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + D+++ EL RP I I++ R GDL EN Y AA+E Q E R+ +
Sbjct: 8 WLTQESHDRLKAELDQLIA-NRPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 66
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLV 95
L+++++ A+V + SG +
Sbjct: 67 LQDLLSNAKVGEAPKQSGVALPGSVVKVYY 96
>gi|94312386|ref|YP_585596.1| GreA/GreB family elongation factor [Cupriavidus metallidurans CH34]
gi|93356238|gb|ABF10327.1| regulator of nucleoside diphosphate kinase [Cupriavidus
metallidurans CH34]
gi|222871747|gb|EEF08878.1| predicted protein [Populus trichocarpa]
Length = 145
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 20/90 (22%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
++ RA ++ + D + + V + +++ +V +AD+ +G +S+ SPI +
Sbjct: 46 LLERAAIVSPDAIPKDVVTMNSRVVCALEGEAKPRDWTLVYPDDADLATGRLSVLSPIGQ 105
Query: 129 ALIGKELGDIISVNAPGGE-KTYEILQVLW 157
AL+G GD + P G + I+++ +
Sbjct: 106 ALLGARSGDTVDYRLPDGRAQRVTIVEIAF 135
>gi|145641638|ref|ZP_01797215.1| transcription elongation factor GreA [Haemophilus influenzae
R3021]
gi|145273685|gb|EDK13554.1| transcription elongation factor GreA [Haemophilus influenzae
22.4-21]
Length = 58
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 42/58 (72%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
+ +IP+T +G +++++EL + + RP IIKAI+EAR +GDL ENAEY AA+E Q
Sbjct: 1 MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFL 58
>gi|296103416|ref|YP_003613562.1| nucleoside diphosphate kinase regulator [Enterobacter cloacae
subsp. cloacae ATCC 13047]
gi|295057875|gb|ADF62613.1| nucleoside diphosphate kinase regulator [Enterobacter cloacae
subsp. cloacae ATCC 13047]
Length = 136
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E E+ + LNE + RA++ +M D +
Sbjct: 3 RPTIIINELDAERIDRLLEKPEFASLPVADALNE--------ELDRAQMCTPESMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V +G++ +V + S +S+ +P+ AL+G GD I PGG
Sbjct: 55 TMNSQVKFRNLTTGEELTRTLVYPAQMTDSSAQLSVLAPVGAALLGLRTGDTIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L +L+
Sbjct: 115 ASTHLEVLALLY 126
>gi|323135884|ref|ZP_08070967.1| GreA/GreB family elongation factor [Methylocystis sp. ATCC 49242]
gi|322398975|gb|EFY01494.1| GreA/GreB family elongation factor [Methylocystis sp. ATCC 49242]
Length = 155
Score = 75.6 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 20/135 (14%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G ++I++EL E I +A A D +A A ++L+ R +
Sbjct: 30 VTPEGLEQIERELHRLHGE--------IEKATANDDN--HALALAQRDLRYWTARRAS-- 77
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
AEVI + FG +VE G+++ +++VG+ EAD GL+ +P+
Sbjct: 78 ------AEVIRP-IADHSHVRFGHR-VVVELEGGERRAFRLVGEDEADPAKGLIPYVAPL 129
Query: 127 ARALIGKELGDIISV 141
A AL+GK +GD V
Sbjct: 130 ATALMGKTVGDKAEV 144
>gi|114706677|ref|ZP_01439578.1| nucleoside diphosphate kinase regulator [Fulvimarina pelagi
HTCC2506]
gi|114538069|gb|EAU41192.1| nucleoside diphosphate kinase regulator [Fulvimarina pelagi
HTCC2506]
Length = 156
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 24/154 (15%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
D VT +G I EL + AR D A +++ N
Sbjct: 24 SDPNIVTPRGLKMIDDELEALNAQRAT--------AREAKDKVALATIHR--DMRYWNAR 73
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R A+++ + + FG V++ E++ G K+++ IVG EAD + G +S
Sbjct: 74 R--------ATAKLVKPD-QNPQTVQFGTRVTI-ERDDGQKQSFTIVGIDEADPRDGYLS 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+AR L+GK +G+ + V G EI+ +
Sbjct: 124 YLSPLARNLVGKNVGEEVKV----GASNAEIVSI 153
>gi|295096632|emb|CBK85722.1| Transcription elongation factor [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 136
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E E+ + LNE + RA++ TM D +
Sbjct: 3 RPTIIINELDAERIDRLLEKPEFASLPVSDALNE--------ELDRAQMCTPETMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V +G++ +V + S +S+ +P+ AL+G GD I PGG
Sbjct: 55 TMNSQVKFRNLTTGEELTRTLVYPAQMTDSSTQLSVLAPVGAALLGLRTGDTIHWELPGG 114
Query: 147 -EKTYEILQVLW 157
E+L++L+
Sbjct: 115 ASAHLEVLELLY 126
>gi|91784350|ref|YP_559556.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400]
gi|91688304|gb|ABE31504.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400]
Length = 136
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 60 EGRMAEL-ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
+ R+ ++ ++++ RA ++D + + + + +LV++ SG+ + +V AD G
Sbjct: 27 DARLQDMLDDVLERAVIVDSHEIPANVVTMNSQATLVDETSGEHMTWTVVYPPNADFAHG 86
Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+++ SP AL+G + G+ I P G EK ++ ++L+
Sbjct: 87 RLNVFSPAGLALLGAKRGERIRFTPPSGTEKVLKLEKILF 126
>gi|296158435|ref|ZP_06841266.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
gi|295891379|gb|EFG71166.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
Length = 136
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/100 (24%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 60 EGRMAEL-ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
+ R+ ++ ++++ RA ++D + + + + +LV++ SG+ + +V AD G
Sbjct: 27 DARLQDMLDDVLERAVIVDSHEIPANVVTMNSQATLVDETSGEHMTWTVVYPPNADFAHG 86
Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+++ SP AL+G + G+ I P G EK ++ ++L+
Sbjct: 87 RLNVFSPAGLALLGAKRGERIRFTPPSGTEKVLKLEKILF 126
>gi|75675115|ref|YP_317536.1| transcription elongation factor GreA/GreB region [Nitrobacter
winogradskyi Nb-255]
gi|74419985|gb|ABA04184.1| GreA/GreB family elongation factor [Nitrobacter winogradskyi
Nb-255]
Length = 151
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 9/143 (6%)
Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENA--EYQAAKELQNLNEGRMAELENIITRAEVI 76
L ++ P I + + L+E A +Y A E + E I ++
Sbjct: 2 LDNLKKTHLPAIAISAHDIDRLRHLAEAAIEKYPATAE---FLAREIDRAEIIPADGSLL 58
Query: 77 DISTMSG---DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
D + + + + V+ ++ SG K+ +V ++ADV +G +SI SPI ALIG
Sbjct: 59 DDTRDQRWKVNLVTMQSEVTFIDDVSGQKRRVTLVYPEDADVDAGKISILSPIGAALIGL 118
Query: 134 ELGDIISVNAP-GGEKTYEILQV 155
G I P GG ++ ++ V
Sbjct: 119 SAGQSIEFQTPSGGWRSLTVIAV 141
>gi|325105687|ref|YP_004275341.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145]
gi|324974535|gb|ADY53519.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145]
Length = 126
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 50/93 (53%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LE + A+V+ + + GD + + V + ++ +Q+V QEA+++ +S+
Sbjct: 32 QKLEKELNEAKVLADAELPGDVVRLESVVKIESVDNNKTFTFQLVMPQEANMKKQKLSVF 91
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+PI AL+G + G I+ P G K ++I+ V
Sbjct: 92 APIGIALLGYQTGTIVEWEMPDGVKKFKIIDVK 124
>gi|299140453|ref|ZP_07033593.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
gi|298597567|gb|EFI53765.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
Length = 125
Score = 74.9 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
K +T G +++++E ++ ++RP + ++ A + GD SENA+YQ AK +GR+
Sbjct: 19 KNYITPGGLERLKEEHQFLLNKDRPAVAVVVAWAASNGDRSENADYQYAKRRLRQIDGRI 78
Query: 64 AELENIITRAEVIDI----STMSGDRIAFGATVSLVEKNSGDKKNYQI 107
L + AEV+D S + ++ FGAT L +G ++ I
Sbjct: 79 RHLSKRMEAAEVVDPEAPRSGLRATKVYFGAT-VLYANAAGVEREVSI 125
>gi|309781359|ref|ZP_07676095.1| regulator of nucleoside diphosphate kinase [Ralstonia sp.
5_7_47FAA]
gi|308919772|gb|EFP65433.1| regulator of nucleoside diphosphate kinase [Ralstonia sp.
5_7_47FAA]
Length = 135
Score = 74.9 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 35 SEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94
A Y + + A N ++++I RA V+ + + D + + V +
Sbjct: 3 KAAAIYLTELDLTRLENAANRAGSNSPLAGLVDDLIARANVVPGNKIPADVVTMNSVVCV 62
Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEIL 153
V+ ++G ++ + +V +EA+V S +S+ SP+ AL+G G + +AP G +++ I
Sbjct: 63 VD-DTGAEQEWTLVYPEEANVASAKLSVLSPMGAALLGARAGKSVKYSAPNGAQRSLRID 121
Query: 154 QVLW 157
+V +
Sbjct: 122 RVAF 125
>gi|331696133|ref|YP_004332372.1| GreA/GreB family elongation factor [Pseudonocardia dioxanivorans
CB1190]
gi|326950822|gb|AEA24519.1| GreA/GreB family elongation factor [Pseudonocardia dioxanivorans
CB1190]
Length = 169
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/151 (15%), Positives = 64/151 (42%), Gaps = 5/151 (3%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M ++ + + + +++ EL + +R + + GD +++ +
Sbjct: 1 MTEEAVWLAEIAYQRLRNELAELLR-QRAEGAEGGAGDHLVGDSADSTGDHQRLTDRRER 59
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV-GDQEADVQS- 117
+ R+ +L+ ++ +A ++ G +++ + + + + + ++ A
Sbjct: 60 DNRIRKLQELLQKA-IVSHDPPDDGVAEPGMLLTVRYEEDQESETFLLSHYEEGAYPDDF 118
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEK 148
S SP+ A++GK+ GD I + P GE+
Sbjct: 119 MTCSPDSPLGSAVLGKKEGDRIEYSLPNGER 149
>gi|326802507|ref|YP_004320326.1| GreA/GreB family elongation factor [Sphingobacterium sp. 21]
gi|326553271|gb|ADZ81656.1| GreA/GreB family elongation factor [Sphingobacterium sp. 21]
Length = 124
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 47/89 (52%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ RA+V+ + +R+ + V + + +S + ++IV AD++ +S+ +P+
Sbjct: 36 YELGRAKVLAKDAIEKERVKLNSQVMVKDLDSQNTMVFRIVTPDLADMKQQKISVLTPMG 95
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156
ALIG + GD + P G K Y IL+V
Sbjct: 96 SALIGFKEGDQVEWKMPIGIKRYVILKVE 124
>gi|182412842|ref|YP_001817908.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
gi|177840056|gb|ACB74308.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
Length = 204
Score = 74.9 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 73/160 (45%), Gaps = 15/160 (9%)
Query: 11 GFDK-IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
G+++ + +E + +R ++ EA + GDL EN ++AAKE + +M L+
Sbjct: 24 GYNRVLAEEFEALK-VKRAALVLDKIEAHSQGDLRENFGFKAAKEAIRAVDRKMMALDRF 82
Query: 70 ITR--AEVIDIS---TMSGDRIAFGATVSLV--EKNSGDKKNYQIV----GDQEADVQSG 118
+ R + +D + T S D + G ++ + + ++ + G+ +D SG
Sbjct: 83 VARNTFKEVDPAAWLTKSTDTLQLGHVTTIEKQDVTTKRTHSFTFLVTTYGETASDPDSG 142
Query: 119 LVS--ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
L +SP+A A++G G V P GE ++ +
Sbjct: 143 LECLPHTSPLATAVLGLAAGAQTKVMLPAGESLLTLISIR 182
>gi|254467874|ref|ZP_05081280.1| GreA/GreB family elongation factor [beta proteobacterium KB13]
gi|207086684|gb|EDZ63967.1| GreA/GreB family elongation factor [beta proteobacterium KB13]
Length = 164
Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT G ++++ + + E I + D EN + + E +
Sbjct: 29 YVTPNGHKQLKETIHLIETE--------IKSIKELEDSPENKQ------NKMKLERDLRY 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
A +ID +++ FGA V L++ + + +QIVG+ EAD++ +S SP
Sbjct: 75 YLKRFETAILIDKHE-ENNKVLFGAHVILID-ENDEAYKFQIVGEDEADIKQNKLSYVSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A+ LIG +GD + G + I + +
Sbjct: 133 LAKELIGSLIGDEVVWKRADGNRVVFIDSINY 164
>gi|239820663|ref|YP_002947848.1| GreA/GreB family elongation factor [Variovorax paradoxus S110]
gi|239805516|gb|ACS22582.1| GreA/GreB family elongation factor [Variovorax paradoxus S110]
Length = 133
Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+++ AEV + G+ + + V +V+ ++ ++ I +EA +GL+S+ SP+
Sbjct: 33 DLLDCAEVTSSRAVPGNIVTMCSRVEIVDAHTRRRQTLTICYPEEAKPAAGLISVLSPVG 92
Query: 128 RALIGKELGDIISVNAPGGEK-TYEILQVLW 157
L+G ++GD AP GE E+ +L+
Sbjct: 93 TGLLGLKVGDTARWQAPNGEACAAEVAAILF 123
>gi|187924646|ref|YP_001896288.1| GreA/GreB family elongation factor [Burkholderia phytofirmans PsJN]
gi|187715840|gb|ACD17064.1| GreA/GreB family elongation factor [Burkholderia phytofirmans PsJN]
Length = 136
Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L++++ RA ++D + + + + +LV++ SG++ + +V AD G +++ S
Sbjct: 33 MLDDVLERAVIVDSREIPANVVTMNSQATLVDETSGEQMTWTVVYPPNADFAHGRLNVFS 92
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
P AL+G + G+ I P G EK ++ ++L+
Sbjct: 93 PAGIALLGAKRGERIRFTPPSGTEKVLKLEKILY 126
>gi|77747771|ref|NP_636222.2| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. campestris str. ATCC 33913]
gi|188992915|ref|YP_001904925.1| Regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. campestris str. B100]
gi|167734675|emb|CAP52885.1| Regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. campestris]
Length = 143
Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G++ +V EADVQ +S+ +P+
Sbjct: 43 DELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHSRISVLAPVG 102
Query: 128 RALIGKELGDIISVNAPGG 146
AL+G +G I APGG
Sbjct: 103 TALLGLSVGQSIDWRAPGG 121
>gi|13476329|ref|NP_107899.1| transcription elongation factor greA [Mesorhizobium loti
MAFF303099]
gi|14027090|dbj|BAB54044.1| transcription elongation factor; GreA [Mesorhizobium loti
MAFF303099]
Length = 157
Score = 74.5 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 24/148 (16%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +I+ L + D+ AE +A +E + +
Sbjct: 30 VTERGLAQIEDNLAELR------------------DILAKAERKADRERIAVVSRDLRYW 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
AE+ S D + FG V+L E + G K +++IVG+ EAD G +S SP+
Sbjct: 72 TARRENAELSVPEPGS-DVVRFGMGVTL-EADDGKKVHWKIVGEDEADPTKGSISHVSPM 129
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
A AL GK++GD+ +VN K +EI++
Sbjct: 130 AVALFGKKVGDVAAVNG----KEWEIVK 153
>gi|145222535|ref|YP_001133213.1| GreA/GreB family elongation factor [Mycobacterium gilvum PYR-GCK]
gi|315442983|ref|YP_004075862.1| GreA/GreB family elongation factor [Mycobacterium sp. Spyr1]
gi|145215021|gb|ABP44425.1| GreA/GreB family elongation factor [Mycobacterium gilvum PYR-GCK]
gi|315261286|gb|ADT98027.1| GreA/GreB family elongation factor [Mycobacterium sp. Spyr1]
Length = 157
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 60/146 (41%), Gaps = 21/146 (14%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
D I ++ + + ++QEL A+ A E + A++
Sbjct: 4 ADTIWMSPQTRESLEQEL------------AALMAAPGPAGSDEVVDAWLARKE------ 45
Query: 62 RMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
R+ ++ ++T+AE +D + G +++ ++GD + + + D + +
Sbjct: 46 RIRQIHELLTKAEHAVDPA--DDGVAEPGMVLTVRFDDAGDTETFLLGTRATVDSELDVY 103
Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
S++SP+ AL+G G S P G
Sbjct: 104 SVNSPMGSALLGATPGQQRSYQLPNG 129
>gi|148252734|ref|YP_001237319.1| transcription elongation factor regulatory protein [Bradyrhizobium
sp. BTAi1]
gi|146404907|gb|ABQ33413.1| GreA/GreB family elongation factor [Bradyrhizobium sp. BTAi1]
Length = 160
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 24/151 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRI-IKAISEARAYGDLS-ENAEYQAAKELQNLNEGRMA 64
VT G ++ +L Q I+ ++E R L +A Y A
Sbjct: 31 VTEAGLKALEDQLHQAQAAHEAAQAIEDVNERRRESALPLRDARYFAT------------ 78
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ A+V+ S + IAFG+TV+ E+ G + Y+IVG+ EAD + G++S S
Sbjct: 79 ----RLRTAQVM-PQPSSTETIAFGSTVTF-ERGDGRVQTYRIVGEDEADPKRGMISYVS 132
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+AR L+GK +GD++ ++ +T EI +
Sbjct: 133 PVARLLMGKSVGDVVEMSG----QTIEITAI 159
>gi|77359225|ref|YP_338800.1| regulator of nucleoside diphosphate kinase [Pseudoalteromonas
haloplanktis TAC125]
gi|76874136|emb|CAI85357.1| putative regulator of nucleoside diphosphate kinase
[Pseudoalteromonas haloplanktis TAC125]
Length = 161
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 19 LRWRQQEERPRIIKAISEARAYGDLSEN-AEYQAAKELQNLNEGRMAELENIITRAEVID 77
++ + +RP II + +A DL E+ A E ELE + RA ++D
Sbjct: 20 IKDIELNKRPEIIISSLDADRLYDLIESLPANSFAGEK---------ELEAELGRATIVD 70
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+ + +TV+ V ++S ++ N +V ++ D +SI +PI AL+G GD
Sbjct: 71 PKDVPATIVTMNSTVNFVVESSKEEFNLTLVYPKDLDASGQKISILAPIGGALLGLSQGD 130
Query: 138 IISVNAP-GGEKTYEILQVLW 157
I P GG +I +V +
Sbjct: 131 EIEWPKPGGGLIKVKIKEVTY 151
>gi|62179216|ref|YP_215633.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224582450|ref|YP_002636248.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|62126849|gb|AAX64552.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|224466977|gb|ACN44807.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|322713681|gb|EFZ05252.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Choleraesuis str. A50]
Length = 136
Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALNA--------ELDRAQMCSPQEMPNDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V S +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 TSTHLEVLELEY 126
>gi|288940256|ref|YP_003442496.1| GreA/GreB family elongation factor [Allochromatium vinosum DSM 180]
gi|288895628|gb|ADC61464.1| GreA/GreB family elongation factor [Allochromatium vinosum DSM 180]
Length = 137
Score = 74.1 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
M ELE + RAEV+D M + ++ +TV ++ + +V ++ D G +SI
Sbjct: 32 MDELEAELARAEVVDPREMPPNVVSMNSTVRFRVMSTNEAFTLTLVYPKDMDASGGKISI 91
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+P+ AL+G GD I P GG I +V +
Sbjct: 92 LAPVGSALLGLSSGDEIEWPKPGGGVLRVRIEEVTY 127
>gi|325928206|ref|ZP_08189414.1| transcription elongation factor [Xanthomonas perforans 91-118]
gi|325541422|gb|EGD12956.1| transcription elongation factor [Xanthomonas perforans 91-118]
Length = 157
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+
Sbjct: 54 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 113
Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155
AL+G +G I P G + + V
Sbjct: 114 SALLGLSVGQSIDWRTPDGRDLRLRVTAV 142
>gi|294626142|ref|ZP_06704749.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
gi|292599591|gb|EFF43721.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 11122]
Length = 146
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+
Sbjct: 43 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 102
Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155
AL+G +G I P G + + V
Sbjct: 103 SALLGLSVGQSIDWRTPDGRDLRLRVTAV 131
>gi|289670900|ref|ZP_06491975.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. musacearum NCPPB4381]
Length = 143
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+
Sbjct: 43 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 102
Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155
AL+G +G I P G + + V
Sbjct: 103 SALLGLSVGQSIDWRTPDGRDLRLRVTAV 131
>gi|289663515|ref|ZP_06485096.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. vasculorum NCPPB702]
Length = 143
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+
Sbjct: 43 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 102
Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155
AL+G +G I P G + + V
Sbjct: 103 SALLGLSVGQSIDWRTPDGRDLRLRVTAV 131
>gi|78046496|ref|YP_362671.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|78034926|emb|CAJ22571.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. vesicatoria str. 85-10]
Length = 146
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+
Sbjct: 43 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 102
Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155
AL+G +G I P G + + V
Sbjct: 103 SALLGLSVGQSIDWRTPDGRDLRLRVTAV 131
>gi|73542981|ref|YP_297501.1| transcription elongation factor GreA/GreB region [Ralstonia
eutropha JMP134]
gi|72120394|gb|AAZ62657.1| Prokaryotic transcription elongation factor GreA/GreB region
[Ralstonia eutropha JMP134]
Length = 139
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 19/90 (21%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
++ RA ++ + D + + + + + + +V EAD +G +S+ SP+ +
Sbjct: 40 LLARAAIVAPQDIPTDVVTMNSRLVCALQGDATPRLWTLVYPDEADFDAGRLSVLSPVGQ 99
Query: 129 ALIGKELGDIISVNAPGG-EKTYEILQVLW 157
AL+G G+ +S P G E+ + ++ +
Sbjct: 100 ALLGARAGETVSYRLPDGREQHVSVTEITF 129
>gi|168818764|ref|ZP_02830764.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205344225|gb|EDZ30989.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
Length = 136
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIAYALNA--------ELDRAQMCSPQEMPNDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V S +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 ASTHLEVLELEY 126
>gi|108762200|ref|YP_632099.1| regulator of nucleoside diphosphate kinase [Myxococcus xanthus DK
1622]
gi|108466080|gb|ABF91265.1| regulator of nucleoside diphosphate kinase [Myxococcus xanthus DK
1622]
Length = 138
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 61 GRMAELENIIT----RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
GR AE ++ RA V+ + D + + V ++ SG+++ +V ++A
Sbjct: 27 GRTAEFAEMLDAELTRARVVASEEVPPDVVTMNSKVVFEDEQSGERREVTLVYPRDASSD 86
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
G +S+ +PI ALIG +G I+ PGG K I+ V +
Sbjct: 87 DGRISVLAPIGSALIGLTVGQTITWPLPGGRSKRLRIVAVPY 128
>gi|325290512|ref|YP_004266693.1| GreA/GreB family elongation factor [Syntrophobotulus glycolicus DSM
8271]
gi|324965913|gb|ADY56692.1| GreA/GreB family elongation factor [Syntrophobotulus glycolicus DSM
8271]
Length = 138
Score = 74.1 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 14/133 (10%)
Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
++R RI+K I + +G N+ + +LE + RA ++ + +
Sbjct: 10 KDRERILKLIEREKEFGT--------------GRNKEPLRDLEQELNRANIVSSEEIPHE 55
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
I + V L + G++ Y +V ++A + +S+ +PI A++G GD+I P
Sbjct: 56 SITMNSKVLLKDLALGEETIYTLVYPEDAKLSENKISVLAPIGTAILGFREGDVIDWKVP 115
Query: 145 GGEKTYEILQVLW 157
G + ++L+
Sbjct: 116 AGTVQLRVEKILY 128
>gi|307140092|ref|ZP_07499448.1| transcription elongation factor GreB [Escherichia coli H736]
Length = 68
Score = 74.1 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 39/64 (60%)
Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+E + G ++IVG E + +SI SP+ARAL+ KE+GD+ VN P GE ++ +
Sbjct: 3 IENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYVNA 62
Query: 155 VLWI 158
+ ++
Sbjct: 63 IEYV 66
>gi|187929940|ref|YP_001900427.1| GreA/GreB family elongation factor [Ralstonia pickettii 12J]
gi|187726830|gb|ACD27995.1| GreA/GreB family elongation factor [Ralstonia pickettii 12J]
Length = 135
Score = 74.1 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 35 SEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94
A Y + + A N ++++I RA V+ + + D + + V +
Sbjct: 3 KAAAIYLTELDLTRLENAANRAGSNSPLADLVDDLIARANVVPSNKIPADVVTMNSVVCV 62
Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEIL 153
V+ ++G ++ + +V +EA+V S +S+ SP+ AL+G G + +AP G +++ I
Sbjct: 63 VD-DAGAEQKWTLVYPEEANVASAKLSVLSPMGAALLGARAGKSVKYSAPNGAQRSLRID 121
Query: 154 QVLW 157
+V +
Sbjct: 122 RVAF 125
>gi|319787977|ref|YP_004147452.1| GreA/GreB family elongation factor [Pseudoxanthomonas suwonensis
11-1]
gi|317466489|gb|ADV28221.1| GreA/GreB family elongation factor [Pseudoxanthomonas suwonensis
11-1]
Length = 143
Score = 74.1 bits (181), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RAEV+ + D + + V + SG+K +V EADV+ G VS+ +P+
Sbjct: 43 DELNRAEVLPPEQVPADVVTMHSQVECEDIASGEKHVLTLVYPNEADVEKGRVSVLAPVG 102
Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQVLW 157
AL+G +G I APGG + V +
Sbjct: 103 SALLGLSVGQSIDWQAPGGRPLKLRVTGVRY 133
>gi|77748553|ref|NP_641255.2| regulator of nucleoside diphosphate kinase [Xanthomonas axonopodis
pv. citri str. 306]
Length = 146
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+
Sbjct: 43 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 102
Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155
AL+G +G I P G + + V
Sbjct: 103 SALLGLSVGQRIDWRTPDGRDLRLRVTAV 131
>gi|85859428|ref|YP_461630.1| transcription elongation factor [Syntrophus aciditrophicus SB]
gi|85722519|gb|ABC77462.1| transcription elongation factor [Syntrophus aciditrophicus SB]
Length = 134
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
LE + A V+ M D + + V + +G+++ +V +A++ SG VS+
Sbjct: 30 RSLEAELVNAVVVPSEEMPPDVVTMNSCVCFEDLTTGNRETITLVYPGQANMASGRVSVL 89
Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+P+ ALIG +G I P G ++ I++VL+
Sbjct: 90 APVGSALIGLSVGQTIEWPMPNGRKRRLRIVEVLY 124
>gi|257054902|ref|YP_003132734.1| nucleoside diphosphate kinase regulator [Saccharomonospora viridis
DSM 43017]
gi|256584774|gb|ACU95907.1| transcription elongation factor [Saccharomonospora viridis DSM
43017]
Length = 154
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/151 (22%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ ++++EL ++ +R ++ + E GD ++ A+ E+ + + R+ E+
Sbjct: 7 LSPATRSRLERELEQLRK-QRAELLPRLGE-DPLGDSADQADLVERSEVVSRLDRRINEV 64
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI---S 123
+++ ++ ST S + G V+L + G ++ +VG A+ S
Sbjct: 65 VDLL-HGQI---STESEGGLPSGTKVTLRF-DDGSVEDMVVVG-VAAEADEDDTSTLTAD 118
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
SP+ +AL G + GD ++ P GE T EI++
Sbjct: 119 SPLGQALAGHQEGDTVTYRTPKGEVTAEIVK 149
>gi|149279968|ref|ZP_01886094.1| nucleoside diphosphate kinase regulator protein, putative
[Pedobacter sp. BAL39]
gi|149229348|gb|EDM34741.1| nucleoside diphosphate kinase regulator protein, putative
[Pedobacter sp. BAL39]
Length = 129
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 46/86 (53%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
++RA ++ D I +TV + ++++G+ IV Q A+++ +S+ +PIA A
Sbjct: 39 LSRAVILSNEEFPSDAIRLNSTVRIQDESTGEIMELIIVLPQHANIKEKKISVLTPIAAA 98
Query: 130 LIGKELGDIISVNAPGGEKTYEILQV 155
LIG GD + P G K + I +V
Sbjct: 99 LIGFRQGDAVQWKVPAGLKNFRITEV 124
>gi|294634651|ref|ZP_06713184.1| regulator of nucleoside diphosphate kinase [Edwardsiella tarda ATCC
23685]
gi|291091897|gb|EFE24458.1| regulator of nucleoside diphosphate kinase [Edwardsiella tarda ATCC
23685]
Length = 140
Score = 73.7 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E E+ Q LNE + RA+++ M D +
Sbjct: 7 RPAIIINELDAERLDRLLERPEFANQPIAQALNE--------ELDRAQLLAPEAMPTDVV 58
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + +S ++ ++ + +S+ +PI AL+G +GD I + P G
Sbjct: 59 TMNSRVRFRDLSSNEEHVRTLIYPHLPNDAEDGLSVMAPIGAALLGLHVGDAIRWHLPNG 118
Query: 147 EKT-YEILQVLW 157
+T E+L +L+
Sbjct: 119 SQTHIEVLALLY 130
>gi|283784385|ref|YP_003364250.1| regulator of nucleoside diphosphate kinase [Citrobacter rodentium
ICC168]
gi|282947839|emb|CBG87399.1| regulator of nucleoside diphosphate kinase [Citrobacter rodentium
ICC168]
Length = 136
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 51/132 (38%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA + TM D +
Sbjct: 3 RPPIIINDLDAERIDRLLEQPAYADLPIADALNA--------ELDRARMCSPETMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAAMTDSNTQLSLMAPVGAALLGLRVGDTIHWQLPGG 114
Query: 147 EK-TYEILQVLW 157
E+L++ +
Sbjct: 115 VSAHLEVLELEY 126
>gi|227877960|ref|ZP_03995964.1| possible transcription elongation factor GreA [Lactobacillus
crispatus JV-V01]
gi|227862430|gb|EEJ69945.1| possible transcription elongation factor GreA [Lactobacillus
crispatus JV-V01]
Length = 85
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ AE++ ++ G TV L + + + Y++VG EAD+ +G VS SP+ +A
Sbjct: 1 LKYAEIV--KAEDDGKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPLGQA 58
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156
++ KE G +V AP GE I++V
Sbjct: 59 IMKKEAGTTATVAAPVGEYQVTIVEVK 85
>gi|320177450|gb|EFW52449.1| Regulator of nucleoside diphosphate kinase [Shigella dysenteriae
CDC 74-1112]
Length = 136
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E+ Y +LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEHPAYAGLPIADSLNA--------ELDRAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 VATHLEVLELEY 126
>gi|21111854|gb|AAM40146.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 135
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G++ +V EADVQ +S+ +P+
Sbjct: 35 DELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHSRISVLAPVG 94
Query: 128 RALIGKELGDIISVNAPGG 146
AL+G +G I APGG
Sbjct: 95 TALLGLSVGQSIDWRAPGG 113
>gi|16759576|ref|NP_455193.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16763993|ref|NP_459608.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29142651|ref|NP_805993.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56414248|ref|YP_151323.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|161615176|ref|YP_001589141.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|167550854|ref|ZP_02344610.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167990616|ref|ZP_02571716.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168231621|ref|ZP_02656679.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168236603|ref|ZP_02661661.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168240457|ref|ZP_02665389.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168260874|ref|ZP_02682847.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168465785|ref|ZP_02699667.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|194450939|ref|YP_002044647.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194471151|ref|ZP_03077135.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194735601|ref|YP_002113733.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197250140|ref|YP_002145589.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197263195|ref|ZP_03163269.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197363171|ref|YP_002142808.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|198245388|ref|YP_002214607.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200390133|ref|ZP_03216744.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204930449|ref|ZP_03221379.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205351905|ref|YP_002225706.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207856082|ref|YP_002242733.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|213023434|ref|ZP_03337881.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. 404ty]
gi|213051866|ref|ZP_03344744.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
gi|213417566|ref|ZP_03350708.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213425121|ref|ZP_03357871.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213613069|ref|ZP_03370895.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
gi|213647691|ref|ZP_03377744.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213850322|ref|ZP_03381220.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|238911567|ref|ZP_04655404.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
gi|289829888|ref|ZP_06547376.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|25511993|pir||AC0578 regulator of nucleoside diphosphate kinase STY0664 [imported] -
Salmonella enterica subsp. enterica serovar Typhi
(strain CT18)
gi|16419127|gb|AAL19567.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|16501868|emb|CAD05093.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Typhi]
gi|29138282|gb|AAO69853.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56128505|gb|AAV78011.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|161364540|gb|ABX68308.1| hypothetical protein SPAB_02944 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194409243|gb|ACF69462.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194457515|gb|EDX46354.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194711103|gb|ACF90324.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195631988|gb|EDX50508.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197094648|emb|CAR60171.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|197213843|gb|ACH51240.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197241450|gb|EDY24070.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197290337|gb|EDY29693.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|197939904|gb|ACH77237.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199602578|gb|EDZ01124.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204320383|gb|EDZ05586.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205271686|emb|CAR36516.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|205324214|gb|EDZ12053.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205330837|gb|EDZ17601.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205334065|gb|EDZ20829.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205339721|gb|EDZ26485.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205349901|gb|EDZ36532.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|206707885|emb|CAR32173.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|261245889|emb|CBG23690.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Typhimurium str. D23580]
gi|267992344|gb|ACY87229.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301157217|emb|CBW16704.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Typhimurium str. SL1344]
gi|312911647|dbj|BAJ35621.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320084884|emb|CBY94674.1| Transcription elongation factor greA Transcript cleavage factor
greA [Salmonella enterica subsp. enterica serovar
Weltevreden str. 2007-60-3289-1]
gi|321226194|gb|EFX51245.1| Regulator of nucleoside diphosphate kinase [Salmonella enterica
subsp. enterica serovar Typhimurium str. TN061786]
gi|322613251|gb|EFY10194.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322621321|gb|EFY18178.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322623740|gb|EFY20578.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629012|gb|EFY25791.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322631734|gb|EFY28488.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322637530|gb|EFY34232.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322641870|gb|EFY38500.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322646715|gb|EFY43221.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322651415|gb|EFY47795.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322653134|gb|EFY49468.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322658854|gb|EFY55109.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322664876|gb|EFY61069.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322668878|gb|EFY65030.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322670616|gb|EFY66749.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322675357|gb|EFY71433.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322682172|gb|EFY78197.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322684997|gb|EFY80994.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323128933|gb|ADX16363.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. 4/74]
gi|323193943|gb|EFZ79145.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323197965|gb|EFZ83087.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323201988|gb|EFZ87048.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323207121|gb|EFZ92074.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|323211668|gb|EFZ96502.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323214352|gb|EFZ99103.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221503|gb|EGA05917.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323225547|gb|EGA09777.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323231105|gb|EGA15221.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323234063|gb|EGA18152.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323238242|gb|EGA22300.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323242524|gb|EGA26548.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323248499|gb|EGA32433.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323251285|gb|EGA35157.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323259213|gb|EGA42856.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323261516|gb|EGA45095.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|323264803|gb|EGA48304.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323272360|gb|EGA55767.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|326622360|gb|EGE28705.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Dublin str. 3246]
gi|326626944|gb|EGE33287.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9]
gi|332987561|gb|AEF06544.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
Length = 136
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALNA--------ELDRAQMCSPQEMPNDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V S +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 ASTHLEVLELEY 126
>gi|256821334|ref|YP_003145297.1| GreA/GreB family elongation factor [Kangiella koreensis DSM 16069]
gi|256794873|gb|ACV25529.1| GreA/GreB family elongation factor [Kangiella koreensis DSM 16069]
Length = 136
Score = 73.7 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELE + RAE+++ + + + +TV +S ++ Y +V ++AD + +SI +
Sbjct: 33 ELEIELERAEIVEPKEVPANVVTMNSTVRFKVASSKEEFEYTLVYPKDADGSNNKISILA 92
Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
P+ A++G + GD I P GG I +V++
Sbjct: 93 PVGSAMLGLKEGDEIEWPKPGGGVLKVHIDKVVY 126
>gi|154246865|ref|YP_001417823.1| transcription elongation factor regulatory protein [Xanthobacter
autotrophicus Py2]
gi|154160950|gb|ABS68166.1| GreA/GreB family elongation factor [Xanthobacter autotrophicus Py2]
Length = 158
Score = 73.3 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 6/129 (4%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
+ A+ EARA L++ + QA + + A++I+ +
Sbjct: 35 MAALDAALGEARAAYALAQMGDVQADRMAMARATRDLRYYSARRASAQLIEAVAHP-QSV 93
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
FGATV++ + G ++ ++IVG+ EAD G VS SP+A+AL+ K +GD+ V G
Sbjct: 94 QFGATVTIS-REDGRRQVFRIVGEDEADPAKGSVSYVSPLAKALMSKVVGDVALV---AG 149
Query: 147 EKTYEILQV 155
+ E+L++
Sbjct: 150 -REVEVLEI 157
>gi|330830261|ref|YP_004393213.1| transcription elongation factor GreA/GreB [Aeromonas veronii B565]
gi|328805397|gb|AEB50596.1| Transcription elongation factor GreA/GreB [Aeromonas veronii B565]
Length = 131
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + RAE+ + + M D + + V ++SG++ +V ++A +S+ +P
Sbjct: 29 LQEELDRAEIREPADMPPDVVTMNSKVRFKMQSSGNEFCLTLVYPRDAKGDESNISVLAP 88
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ AL+G ++GD I+ P G EIL+V++
Sbjct: 89 VGSALLGLKVGDSIAWPGPAGRTIEVEILEVVY 121
>gi|21107037|gb|AAM35791.1| regulator of nucleoside diphosphate kinase [Xanthomonas axonopodis
pv. citri str. 306]
Length = 138
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 40/79 (50%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+
Sbjct: 35 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 94
Query: 128 RALIGKELGDIISVNAPGG 146
AL+G +G I P G
Sbjct: 95 SALLGLSVGQRIDWRTPDG 113
>gi|37527898|ref|NP_931243.1| nucleoside diphosphate kinase regulator [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|36787334|emb|CAE16418.1| Regulator of nucleoside diphosphate kinase [Photorhabdus
luminescens subsp. laumondii TTO1]
Length = 136
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P II +A L E + LNE + RAE++ + + D +
Sbjct: 4 PAIIINELDAERLDSLLEQPAFADTSIADALNE--------ELDRAEIVPPAEIPSDVVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ V ++ S +++ +V S +S+ +P+ AL+G +GD IS P GE
Sbjct: 56 MNSRVRFIDLTSNEERVRTLVYPASLQDSSDQLSVMAPLGAALLGLRIGDEISWELPNGE 115
Query: 148 KT-YEILQVLW 157
+T ++L++L+
Sbjct: 116 ETRVKVLELLY 126
>gi|218549803|ref|YP_002383594.1| nucleoside diphosphate kinase regulator [Escherichia fergusonii
ATCC 35469]
gi|218357344|emb|CAQ89981.1| regulator of nucleoside diphosphate kinase [Escherichia fergusonii
ATCC 35469]
gi|324114743|gb|EGC08711.1| hypothetical protein ERIG_00737 [Escherichia fergusonii B253]
gi|325498198|gb|EGC96057.1| nucleoside diphosphate kinase regulator [Escherichia fergusonii
ECD227]
Length = 136
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ TM D +
Sbjct: 3 RPTIIINDLDAERIDMLLEQPAYAGLPIADALNA--------ELDRAQMCSPETMPNDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 TSTHLEVLELEY 126
>gi|255535437|ref|YP_003095808.1| transcription elongation factor [Flavobacteriaceae bacterium
3519-10]
gi|255341633|gb|ACU07746.1| transcription elongation factor [Flavobacteriaceae bacterium
3519-10]
Length = 170
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 47/90 (52%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ A++++ + + D + + V + +N+ ++IV ++A+++ +SI SP+A
Sbjct: 71 RELHSAKIVESADIPADVVTMNSVVKIHFENNKTVTEFKIVYPEQANIKDRKISIFSPVA 130
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLW 157
ALIG + D I P G I ++++
Sbjct: 131 AALIGYSVNDEIDWIVPSGMTKIIIDEIIY 160
>gi|92118882|ref|YP_578611.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14]
gi|91801776|gb|ABE64151.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14]
Length = 141
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L I RAE+I + + + + V+ ++ SG K+ +V ++ADV +G +SI +
Sbjct: 39 FLAREIDRAEIIPADRSARNIVTMQSEVTFIDDISGQKRTVILVYPEDADVDAGKISILT 98
Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQV 155
PI ALIG G I P GG ++ ++ V
Sbjct: 99 PIGAALIGLSAGQSIEFQTPSGGWRSLTVIAV 130
>gi|331676268|ref|ZP_08376980.1| regulator of nucleoside diphosphate kinase [Escherichia coli H591]
gi|331076326|gb|EGI47608.1| regulator of nucleoside diphosphate kinase [Escherichia coli H591]
Length = 136
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 VATHLEVLELEY 126
>gi|161504212|ref|YP_001571324.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160865559|gb|ABX22182.1| hypothetical protein SARI_02319 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 136
Score = 73.3 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALNA--------ELDRAQMCSPQEMPSDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V S +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 ASTHLEVLELEY 126
>gi|260462428|ref|ZP_05810636.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum
WSM2075]
gi|259031922|gb|EEW33190.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum
WSM2075]
Length = 157
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 24/148 (16%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +I+ L + D+ AE + +E + +
Sbjct: 30 VTERGLAQIEDNLSDLR------------------DILAKAERKGDRERIAVVSRDLRYW 71
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
AE+ S D + FG V+L E + G K +++IVG+ EA+ G +S SP+
Sbjct: 72 NARRESAELSVPEPGS-DLVRFGMGVTL-EGDDGRKVHWKIVGEDEANPSKGSISHVSPM 129
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
A AL GK++G++++VN K +EI++
Sbjct: 130 AVALFGKKVGEVVTVNG----KEWEIVK 153
>gi|213584821|ref|ZP_03366647.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 131
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALNA--------ELDRAQMCSPQEMPNDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V S +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 ASTHLEVLELEY 126
>gi|194444344|ref|YP_002039856.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194403007|gb|ACF63229.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
Length = 136
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALNA--------ELDRAQMCSPQEMPNDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V S +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPVNMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 ASTHLEVLELEY 126
>gi|157157899|ref|YP_001461775.1| nucleoside diphosphate kinase regulator [Escherichia coli E24377A]
gi|157079929|gb|ABV19637.1| regulator of nucleoside diphosphate kinase [Escherichia coli
E24377A]
Length = 136
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 VATHLEVLELEY 126
>gi|225157643|ref|ZP_03725033.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2]
gi|224802710|gb|EEG20963.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2]
Length = 148
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 42/80 (52%)
Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134
+ D + M + V L + ++ + + Y + + AD ++ +SI +PI AL+G +
Sbjct: 47 IEDDTAMPDGVVTLHCEVRLQDLDTNEIETYTLTLPEHADPEAHRISILAPIGTALLGYQ 106
Query: 135 LGDIISVNAPGGEKTYEILQ 154
+ ++++ PGG + IL+
Sbjct: 107 VDNVVTWEMPGGARRLRILE 126
>gi|294665206|ref|ZP_06730505.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
gi|292605029|gb|EFF48381.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans
subsp. aurantifolii str. ICPB 10535]
Length = 146
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G++ +V EADVQ G +S+ +P+
Sbjct: 43 DELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 102
Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155
AL+G +G I P G + + V
Sbjct: 103 SALLGLSIGQSIDWRTPDGRDLRLRVTAV 131
>gi|167647164|ref|YP_001684827.1| transcription elongation factor regulatory protein [Caulobacter sp.
K31]
gi|167349594|gb|ABZ72329.1| GreA/GreB family elongation factor [Caulobacter sp. K31]
Length = 161
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 24/151 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDL--SENAEYQAAKELQNLNEGRMA 64
VT G +I+ EL A S A+A GD+ A +A ++L+ + R +
Sbjct: 30 VTPGGLVRIEDELA--------AARAAYSAAQAGGDVAQDRTAMARATRDLRYWSARRAS 81
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ +D + D + FG +V+ ++ G ++ ++IVG+ EAD G VS S
Sbjct: 82 ------AQLRELDPA---LDVLQFGGSVTF-DREDGRRQTFRIVGEDEADPTQGSVSYVS 131
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+ARAL+GK +GD V GG EI+ +
Sbjct: 132 PVARALLGKAVGDTAIVA--GG--EVEIIAI 158
>gi|315127894|ref|YP_004069897.1| regulator of nucleoside diphosphate kinase [Pseudoalteromonas sp.
SM9913]
gi|315016408|gb|ADT69746.1| regulator of nucleoside diphosphate kinase [Pseudoalteromonas sp.
SM9913]
Length = 137
Score = 72.9 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE + RA +++ + + +TV+ V +++G++ +V + D +SI
Sbjct: 33 KELEAELGRANIVEPHEVPSTVVTMNSTVNFVVESTGEEFTLTLVYPKNIDSSGNKISIL 92
Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+P+ AL+G GD I P GG T I +V +
Sbjct: 93 APVGSALLGLSQGDQIEWPKPGGGLITVAIKEVTY 127
>gi|115523623|ref|YP_780534.1| transcription elongation factor regulatory protein
[Rhodopseudomonas palustris BisA53]
gi|115517570|gb|ABJ05554.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
BisA53]
Length = 160
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 24/152 (15%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRI-IKAISEARAY-GDLSENAEYQAAKELQNLNEGRM 63
VT+ G ++Q+L + I+ ++E R +A Y AA+ +
Sbjct: 30 WVTAGGLQALEQQLAAARAAVEAAAVIEDVNERRRQEAGPLRDARYLAARVRTAQL---I 86
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AE S + +AFG TV+ + G + Y+IVG+ EAD ++G +S
Sbjct: 87 AEPT--------------STEAVAFGHTVTFRRAD-GRVQTYRIVGEDEADPKAGSISFV 131
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+AR L+ K +GD++ G+ EI+ +
Sbjct: 132 SPVARLLMRKAVGDVV----GAGDHELEIIAI 159
>gi|323967558|gb|EGB62974.1| hypothetical protein ERJG_01136 [Escherichia coli M863]
gi|327254294|gb|EGE65916.1| regulator of nucleoside diphosphate kinase [Escherichia coli
STEC_7v]
Length = 136
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYSGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 VATHLEVLELEY 126
>gi|256377672|ref|YP_003101332.1| GreA/GreB family elongation factor [Actinosynnema mirum DSM 43827]
gi|255921975|gb|ACU37486.1| GreA/GreB family elongation factor [Actinosynnema mirum DSM 43827]
Length = 155
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 17/145 (11%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++ +T ++++ EL +E A D E+A + + + +
Sbjct: 4 ARRVWLTPHTHERLRAELAGL-----------FAENSAPTDDPESALLRRTEREERI--- 49
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
E+++++ VI G +++ + D + + + + S
Sbjct: 50 --REVQDLL-NHAVIGEDPPDDGVAEPGMVLTVRYDDFDDTETFLLGMRAVEHGDLEVYS 106
Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
SP+ AL G G+ AP G
Sbjct: 107 PESPLGAALTGARPGEHRGYRAPNG 131
>gi|194291135|ref|YP_002007042.1| regulator of nucleoside diphosphate kinase [Cupriavidus taiwanensis
LMG 19424]
gi|193224970|emb|CAQ70981.1| regulator of nucleoside diphosphate kinase [Cupriavidus taiwanensis
LMG 19424]
Length = 139
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L++++ RA ++ + D + V +N+ +V AD +G +S+ S
Sbjct: 36 MLDSLLARATIVAPEEIPTDVVTMNTRVVCTLPGEQAPRNWTLVYPDAADFDAGRLSVLS 95
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
P+ +AL+G G+ +S P G E+ +I ++ +
Sbjct: 96 PVGQALLGARAGETVSYRLPDGREQQVQIAEIAF 129
>gi|297563795|ref|YP_003682768.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296848244|gb|ADH70262.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 162
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 60/142 (42%), Gaps = 7/142 (4%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
+T + ++++++ELR + P R GD+ Y + + R+
Sbjct: 8 WMTREAYERLREELRTLR--ALPDDDPGTGADRGAGDVLPAPRY---IHDPAVRQARVHT 62
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI-VGDQEADVQSGLVSISS 124
+E +++ A V+D + A G +++ + + + + V D + + S S
Sbjct: 63 IERLLSEA-VVDEAAPDDGIAAPGKVLTIRYDGEEEDEVFLLGVRDASVADRMTVYSPES 121
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ AL+G G+ + AP G
Sbjct: 122 PLGAALVGARQGERRTFTAPRG 143
>gi|241664050|ref|YP_002982410.1| GreA/GreB family elongation factor [Ralstonia pickettii 12D]
gi|240866077|gb|ACS63738.1| GreA/GreB family elongation factor [Ralstonia pickettii 12D]
Length = 135
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 35 SEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94
A Y + + A N ++++I RA V+ + + D + + V +
Sbjct: 3 KAAAIYLTELDLTRLENAANRAGSNSPLAGLVDDLIARANVVPGNKIPADVVTMNSVVCV 62
Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEIL 153
V+ ++G ++ + +V +EA+V S +S+ SP+ AL+G G I AP G +++ I
Sbjct: 63 VD-DTGAEQEWTLVYPEEANVASAKLSVLSPMGAALLGARAGKSIKYAAPNGAQRSLRID 121
Query: 154 QVLW 157
+V +
Sbjct: 122 RVAF 125
>gi|84387295|ref|ZP_00990316.1| transcription elongation factor GreA [Vibrio splendidus 12B01]
gi|84377942|gb|EAP94804.1| transcription elongation factor GreA [Vibrio splendidus 12B01]
Length = 64
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 46/63 (73%)
Query: 96 EKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ ++ ++ YQIV + EA++++G +S+ SPIAR LIGK GD + ++ PGG+K +EI +V
Sbjct: 2 DVDTDEEFRYQIVSEDEAEIKTGRISVKSPIARGLIGKMEGDEVIISTPGGDKDFEIDKV 61
Query: 156 LWI 158
+I
Sbjct: 62 EYI 64
>gi|319952551|ref|YP_004163818.1| grea/greb family elongation factor [Cellulophaga algicola DSM
14237]
gi|319421211|gb|ADV48320.1| GreA/GreB family elongation factor [Cellulophaga algicola DSM
14237]
Length = 139
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 1/94 (1%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +L ++ A+V + + M D I F + V++ N+G K +Q+V +++D+++ VSI
Sbjct: 35 IRKLSEELSFAKVCNNNEMPKDVIRFNSIVTIT-ANNGWTKEFQLVTPKDSDLKNNKVSI 93
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+P+ A+IG GD IS P GE+ + +V
Sbjct: 94 LTPMGAAVIGYAEGDTISWEFPSGEQQLTVSKVE 127
>gi|253991158|ref|YP_003042514.1| nucleoside diphosphate kinase regulator [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253782608|emb|CAQ85772.1| regulator of nucleoside diphosphate kinase [Photorhabdus
asymbiotica]
Length = 136
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P II +A L E + LNE + RAE++ + + D +
Sbjct: 4 PAIIINELDAERLDSLLEQPAFADTSIADALNE--------ELDRAEIVPPAEIPSDVVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ V ++ S +++ +V S +S+ +P+ AL+G +GD IS P GE
Sbjct: 56 MNSRVRFLDLTSSEERVRTLVYPASLQDSSNQLSVMAPLGAALLGLRIGDEISWKLPNGE 115
Query: 148 KT-YEILQVLW 157
+T ++L++L+
Sbjct: 116 ETRVKVLELLY 126
>gi|15800325|ref|NP_286337.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
EDL933]
gi|15829903|ref|NP_308676.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
str. Sakai]
gi|16128593|ref|NP_415143.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K-12 substr. MG1655]
gi|24111957|ref|NP_706467.1| nucleoside diphosphate kinase regulator [Shigella flexneri 2a str.
301]
gi|26246590|ref|NP_752629.1| nucleoside diphosphate kinase regulator [Escherichia coli CFT073]
gi|30062068|ref|NP_836239.1| nucleoside diphosphate kinase regulator [Shigella flexneri 2a str.
2457T]
gi|74311145|ref|YP_309564.1| nucleoside diphosphate kinase regulator [Shigella sonnei Ss046]
gi|82543058|ref|YP_407005.1| nucleoside diphosphate kinase regulator [Shigella boydii Sb227]
gi|89107477|ref|AP_001257.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K-12 substr. W3110]
gi|91209657|ref|YP_539643.1| nucleoside diphosphate kinase regulator [Escherichia coli UTI89]
gi|110640840|ref|YP_668568.1| nucleoside diphosphate kinase regulator [Escherichia coli 536]
gi|110804605|ref|YP_688125.1| nucleoside diphosphate kinase regulator [Shigella flexneri 5 str.
8401]
gi|117622830|ref|YP_851743.1| nucleoside diphosphate kinase regulator [Escherichia coli APEC O1]
gi|157160106|ref|YP_001457424.1| nucleoside diphosphate kinase regulator [Escherichia coli HS]
gi|168747719|ref|ZP_02772741.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4113]
gi|168754712|ref|ZP_02779719.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4401]
gi|168760240|ref|ZP_02785247.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4501]
gi|168770214|ref|ZP_02795221.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4486]
gi|168774674|ref|ZP_02799681.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4196]
gi|168779101|ref|ZP_02804108.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4076]
gi|168786458|ref|ZP_02811465.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC869]
gi|168798171|ref|ZP_02823178.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC508]
gi|170021031|ref|YP_001725985.1| nucleoside diphosphate kinase regulator [Escherichia coli ATCC
8739]
gi|170080191|ref|YP_001729511.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K-12 substr. DH10B]
gi|170080292|ref|YP_001729612.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K-12 substr. DH10B]
gi|170681529|ref|YP_001742727.1| nucleoside diphosphate kinase regulator [Escherichia coli SMS-3-5]
gi|187731796|ref|YP_001879282.1| nucleoside diphosphate kinase regulator [Shigella boydii CDC
3083-94]
gi|188493179|ref|ZP_03000449.1| regulator of nucleoside diphosphate kinase [Escherichia coli 53638]
gi|191167359|ref|ZP_03029175.1| regulator of nucleoside diphosphate kinase [Escherichia coli B7A]
gi|191172347|ref|ZP_03033889.1| regulator of nucleoside diphosphate kinase [Escherichia coli F11]
gi|193069033|ref|ZP_03049991.1| regulator of nucleoside diphosphate kinase [Escherichia coli
E110019]
gi|194427996|ref|ZP_03060541.1| regulator of nucleoside diphosphate kinase [Escherichia coli B171]
gi|194437440|ref|ZP_03069537.1| regulator of nucleoside diphosphate kinase [Escherichia coli 101-1]
gi|195936160|ref|ZP_03081542.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
str. EC4024]
gi|208809474|ref|ZP_03251811.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4206]
gi|208816344|ref|ZP_03257523.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4045]
gi|208822949|ref|ZP_03263267.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4042]
gi|209397427|ref|YP_002269245.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4115]
gi|209917869|ref|YP_002291953.1| nucleoside diphosphate kinase regulator [Escherichia coli SE11]
gi|215485652|ref|YP_002328083.1| nucleoside diphosphate kinase regulator [Escherichia coli O127:H6
str. E2348/69]
gi|217325093|ref|ZP_03441177.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. TW14588]
gi|218553153|ref|YP_002386066.1| nucleoside diphosphate kinase regulator [Escherichia coli IAI1]
gi|218557550|ref|YP_002390463.1| nucleoside diphosphate kinase regulator [Escherichia coli S88]
gi|218688434|ref|YP_002396646.1| nucleoside diphosphate kinase regulator [Escherichia coli ED1a]
gi|218694051|ref|YP_002401718.1| nucleoside diphosphate kinase regulator [Escherichia coli 55989]
gi|218698983|ref|YP_002406612.1| nucleoside diphosphate kinase regulator [Escherichia coli IAI39]
gi|218703944|ref|YP_002411463.1| nucleoside diphosphate kinase regulator [Escherichia coli UMN026]
gi|227884410|ref|ZP_04002215.1| nucleoside diphosphate kinase regulator [Escherichia coli 83972]
gi|237707417|ref|ZP_04537898.1| nucleoside diphosphate kinase regulator [Escherichia sp. 3_2_53FAA]
gi|238899889|ref|YP_002925685.1| regulator of nucleoside diphosphate kinase [Escherichia coli
BW2952]
gi|253774405|ref|YP_003037236.1| nucleoside diphosphate kinase regulator [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254160691|ref|YP_003043799.1| nucleoside diphosphate kinase regulator [Escherichia coli B str.
REL606]
gi|254791777|ref|YP_003076614.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
str. TW14359]
gi|256020563|ref|ZP_05434428.1| nucleoside diphosphate kinase regulator [Shigella sp. D9]
gi|256023775|ref|ZP_05437640.1| nucleoside diphosphate kinase regulator [Escherichia sp. 4_1_40B]
gi|260853863|ref|YP_003227754.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
O26:H11 str. 11368]
gi|260866759|ref|YP_003233161.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
O111:H- str. 11128]
gi|261224078|ref|ZP_05938359.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. FRIK2000]
gi|261257772|ref|ZP_05950305.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
O157:H7 str. FRIK966]
gi|291281563|ref|YP_003498381.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O55:H7
str. CB9615]
gi|293403873|ref|ZP_06647867.1| nucleoside diphosphate kinase regulator [Escherichia coli FVEC1412]
gi|293408736|ref|ZP_06652575.1| kinase regulator [Escherichia coli B354]
gi|293413907|ref|ZP_06656556.1| kinase regulator protein [Escherichia coli B185]
gi|293418722|ref|ZP_06661157.1| hypothetical protein ECCG_03607 [Escherichia coli B088]
gi|298379649|ref|ZP_06989254.1| nucleoside diphosphate kinase regulator protein [Escherichia coli
FVEC1302]
gi|300817873|ref|ZP_07098087.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
107-1]
gi|300823077|ref|ZP_07103211.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
119-7]
gi|300901112|ref|ZP_07119222.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
198-1]
gi|300907782|ref|ZP_07125400.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
84-1]
gi|300920583|ref|ZP_07137004.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
115-1]
gi|300927295|ref|ZP_07143022.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
182-1]
gi|300931538|ref|ZP_07146854.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
187-1]
gi|300939638|ref|ZP_07154290.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
21-1]
gi|300951104|ref|ZP_07164971.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
116-1]
gi|300959172|ref|ZP_07171254.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
175-1]
gi|300990100|ref|ZP_07179112.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
45-1]
gi|300996806|ref|ZP_07181547.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
200-1]
gi|301025288|ref|ZP_07188852.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
69-1]
gi|301028918|ref|ZP_07192087.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
196-1]
gi|301302086|ref|ZP_07208219.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
124-1]
gi|301329123|ref|ZP_07222126.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
78-1]
gi|301643983|ref|ZP_07244006.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
146-1]
gi|306812957|ref|ZP_07447150.1| nucleoside diphosphate kinase regulator [Escherichia coli NC101]
gi|307137228|ref|ZP_07496584.1| nucleoside diphosphate kinase regulator [Escherichia coli H736]
gi|307312673|ref|ZP_07592305.1| GreA/GreB family elongation factor [Escherichia coli W]
gi|309795524|ref|ZP_07689941.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
145-7]
gi|312965055|ref|ZP_07779292.1| regulator of nucleoside diphosphate kinase [Escherichia coli
2362-75]
gi|312970688|ref|ZP_07784869.1| regulator of nucleoside diphosphate kinase [Escherichia coli
1827-70]
gi|331641111|ref|ZP_08342246.1| regulator of nucleoside diphosphate kinase [Escherichia coli H736]
gi|331645767|ref|ZP_08346870.1| regulator of nucleoside diphosphate kinase [Escherichia coli M605]
gi|331651619|ref|ZP_08352638.1| regulator of nucleoside diphosphate kinase [Escherichia coli M718]
gi|331656637|ref|ZP_08357599.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA206]
gi|331661974|ref|ZP_08362897.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA143]
gi|331666962|ref|ZP_08367836.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA271]
gi|331672151|ref|ZP_08372943.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA280]
gi|331682030|ref|ZP_08382654.1| regulator of nucleoside diphosphate kinase [Escherichia coli H299]
gi|332281747|ref|ZP_08394160.1| regulator of nucleoside diphosphate kinase [Shigella sp. D9]
gi|84028114|sp|P0AFW6|RNK_ECO57 RecName: Full=Regulator of nucleoside diphosphate kinase
gi|84028115|sp|P0AFW5|RNK_ECOL6 RecName: Full=Regulator of nucleoside diphosphate kinase
gi|84028116|sp|P0AFW4|RNK_ECOLI RecName: Full=Regulator of nucleoside diphosphate kinase
gi|84028117|sp|P0AFW7|RNK_SHIFL RecName: Full=Regulator of nucleoside diphosphate kinase
gi|210060903|pdb|3BMB|A Chain A, Crystal Structure Of A New Rna Polymerase Interacting
Protein
gi|210060904|pdb|3BMB|B Chain B, Crystal Structure Of A New Rna Polymerase Interacting
Protein
gi|12513506|gb|AAG54945.1|AE005240_11 regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EDL933]
gi|26106989|gb|AAN79173.1|AE016757_77 Regulator of nucleoside diphosphate kinase [Escherichia coli
CFT073]
gi|598118|gb|AAC36933.1| rnk [Escherichia coli]
gi|1651248|dbj|BAA35239.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K12 substr. W3110]
gi|1778527|gb|AAB40810.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
gi|1786827|gb|AAC73711.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K-12 substr. MG1655]
gi|13360107|dbj|BAB34072.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. Sakai]
gi|24050767|gb|AAN42174.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2a
str. 301]
gi|30040312|gb|AAP16045.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2a
str. 2457T]
gi|73854622|gb|AAZ87329.1| regulator of nucleoside diphosphate kinase [Shigella sonnei Ss046]
gi|81244469|gb|ABB65177.1| regulator of nucleoside diphosphate kinase [Shigella boydii Sb227]
gi|91071231|gb|ABE06112.1| regulator of nucleoside diphosphate kinase [Escherichia coli UTI89]
gi|110342432|gb|ABG68669.1| regulator of nucleoside diphosphate kinase [Escherichia coli 536]
gi|110614153|gb|ABF02820.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 5
str. 8401]
gi|115511954|gb|ABJ00029.1| regulator of nucleoside diphosphate kinase [Escherichia coli APEC
O1]
gi|157065786|gb|ABV05041.1| regulator of nucleoside diphosphate kinase [Escherichia coli HS]
gi|169755959|gb|ACA78658.1| GreA/GreB family elongation factor [Escherichia coli ATCC 8739]
gi|169888026|gb|ACB01733.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K-12 substr. DH10B]
gi|169888127|gb|ACB01834.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
K-12 substr. DH10B]
gi|170519247|gb|ACB17425.1| regulator of nucleoside diphosphate kinase [Escherichia coli
SMS-3-5]
gi|187428788|gb|ACD08062.1| regulator of nucleoside diphosphate kinase [Shigella boydii CDC
3083-94]
gi|187769767|gb|EDU33611.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4196]
gi|188017705|gb|EDU55827.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4113]
gi|188488378|gb|EDU63481.1| regulator of nucleoside diphosphate kinase [Escherichia coli 53638]
gi|189002814|gb|EDU71800.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4076]
gi|189357941|gb|EDU76360.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4401]
gi|189360881|gb|EDU79300.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4486]
gi|189369200|gb|EDU87616.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4501]
gi|189373770|gb|EDU92186.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC869]
gi|189379372|gb|EDU97788.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC508]
gi|190902608|gb|EDV62341.1| regulator of nucleoside diphosphate kinase [Escherichia coli B7A]
gi|190907446|gb|EDV67043.1| regulator of nucleoside diphosphate kinase [Escherichia coli F11]
gi|192957577|gb|EDV88022.1| regulator of nucleoside diphosphate kinase [Escherichia coli
E110019]
gi|194413971|gb|EDX30248.1| regulator of nucleoside diphosphate kinase [Escherichia coli B171]
gi|194423609|gb|EDX39599.1| regulator of nucleoside diphosphate kinase [Escherichia coli 101-1]
gi|208729275|gb|EDZ78876.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4206]
gi|208732992|gb|EDZ81680.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4045]
gi|208737142|gb|EDZ84826.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4042]
gi|209158827|gb|ACI36260.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC4115]
gi|209777348|gb|ACI86986.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
gi|209777350|gb|ACI86987.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
gi|209777352|gb|ACI86988.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
gi|209777354|gb|ACI86989.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
gi|209777356|gb|ACI86990.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
gi|209911128|dbj|BAG76202.1| regulator of nucleoside diphosphate kinase [Escherichia coli SE11]
gi|215263724|emb|CAS08059.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O127:H6 str. E2348/69]
gi|217321314|gb|EEC29738.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. TW14588]
gi|218350783|emb|CAU96475.1| regulator of nucleoside diphosphate kinase [Escherichia coli 55989]
gi|218359921|emb|CAQ97464.1| regulator of nucleoside diphosphate kinase [Escherichia coli IAI1]
gi|218364319|emb|CAR01992.1| regulator of nucleoside diphosphate kinase [Escherichia coli S88]
gi|218368969|emb|CAR16723.1| regulator of nucleoside diphosphate kinase [Escherichia coli IAI39]
gi|218425998|emb|CAR06815.1| regulator of nucleoside diphosphate kinase [Escherichia coli ED1a]
gi|218431041|emb|CAR11917.1| regulator of nucleoside diphosphate kinase [Escherichia coli
UMN026]
gi|222032371|emb|CAP75110.1| Regulator of nucleoside diphosphate kinase [Escherichia coli LF82]
gi|226898627|gb|EEH84886.1| nucleoside diphosphate kinase regulator [Escherichia sp. 3_2_53FAA]
gi|227838496|gb|EEJ48962.1| nucleoside diphosphate kinase regulator [Escherichia coli 83972]
gi|238863432|gb|ACR65430.1| regulator of nucleoside diphosphate kinase [Escherichia coli
BW2952]
gi|242376386|emb|CAQ31084.1| regulator of nucleoside diphosphate kinase [Escherichia coli
BL21(DE3)]
gi|253325449|gb|ACT30051.1| GreA/GreB family elongation factor [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972592|gb|ACT38263.1| nucleoside diphosphate kinase regulator [Escherichia coli B str.
REL606]
gi|253976786|gb|ACT42456.1| nucleoside diphosphate kinase regulator [Escherichia coli
BL21(DE3)]
gi|254591177|gb|ACT70538.1| regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. TW14359]
gi|257752512|dbj|BAI24014.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
O26:H11 str. 11368]
gi|257763115|dbj|BAI34610.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
O111:H- str. 11128]
gi|260450221|gb|ACX40643.1| GreA/GreB family elongation factor [Escherichia coli DH1]
gi|281177760|dbj|BAI54090.1| regulator of nucleoside diphosphate kinase [Escherichia coli SE15]
gi|281599915|gb|ADA72899.1| Regulator of nucleoside diphosphate kinase [Shigella flexneri
2002017]
gi|284920411|emb|CBG33472.1| regulator of nucleoside diphosphate kinase [Escherichia coli 042]
gi|290761436|gb|ADD55397.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O55:H7
str. CB9615]
gi|291325250|gb|EFE64665.1| hypothetical protein ECCG_03607 [Escherichia coli B088]
gi|291428459|gb|EFF01484.1| nucleoside diphosphate kinase regulator [Escherichia coli FVEC1412]
gi|291433965|gb|EFF06938.1| kinase regulator protein [Escherichia coli B185]
gi|291471914|gb|EFF14397.1| kinase regulator [Escherichia coli B354]
gi|294491723|gb|ADE90479.1| regulator of nucleoside diphosphate kinase [Escherichia coli
IHE3034]
gi|298279347|gb|EFI20855.1| nucleoside diphosphate kinase regulator protein [Escherichia coli
FVEC1302]
gi|299878075|gb|EFI86286.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
196-1]
gi|300304408|gb|EFJ58928.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
200-1]
gi|300314248|gb|EFJ64032.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
175-1]
gi|300355468|gb|EFJ71338.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
198-1]
gi|300396083|gb|EFJ79621.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
69-1]
gi|300400545|gb|EFJ84083.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
84-1]
gi|300407175|gb|EFJ90713.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
45-1]
gi|300412422|gb|EFJ95732.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
115-1]
gi|300416713|gb|EFK00024.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
182-1]
gi|300449633|gb|EFK13253.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
116-1]
gi|300455463|gb|EFK18956.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
21-1]
gi|300460680|gb|EFK24173.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
187-1]
gi|300524426|gb|EFK45495.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
119-7]
gi|300529570|gb|EFK50632.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
107-1]
gi|300842638|gb|EFK70398.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
124-1]
gi|300844536|gb|EFK72296.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
78-1]
gi|301077633|gb|EFK92439.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
146-1]
gi|305853720|gb|EFM54159.1| nucleoside diphosphate kinase regulator [Escherichia coli NC101]
gi|306907375|gb|EFN37880.1| GreA/GreB family elongation factor [Escherichia coli W]
gi|307552481|gb|ADN45256.1| regulator of nucleoside diphosphate kinase [Escherichia coli ABU
83972]
gi|307627951|gb|ADN72255.1| nucleoside diphosphate kinase regulator [Escherichia coli UM146]
gi|308120899|gb|EFO58161.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
145-7]
gi|310337337|gb|EFQ02475.1| regulator of nucleoside diphosphate kinase [Escherichia coli
1827-70]
gi|312290146|gb|EFR18029.1| regulator of nucleoside diphosphate kinase [Escherichia coli
2362-75]
gi|312945158|gb|ADR25985.1| nucleoside diphosphate kinase regulator [Escherichia coli O83:H1
str. NRG 857C]
gi|313647021|gb|EFS11477.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2a
str. 2457T]
gi|315059866|gb|ADT74193.1| regulator of nucleoside diphosphate kinase [Escherichia coli W]
gi|315135277|dbj|BAJ42436.1| regulator of nucleoside diphosphate kinase [Escherichia coli DH1]
gi|315255090|gb|EFU35058.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
85-1]
gi|315287015|gb|EFU46430.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
110-3]
gi|315292113|gb|EFU51465.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
153-1]
gi|315299131|gb|EFU58385.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
16-3]
gi|315616473|gb|EFU97090.1| regulator of nucleoside diphosphate kinase [Escherichia coli 3431]
gi|320178397|gb|EFW53365.1| Regulator of nucleoside diphosphate kinase [Shigella boydii ATCC
9905]
gi|320185416|gb|EFW60186.1| Regulator of nucleoside diphosphate kinase [Shigella flexneri CDC
796-83]
gi|320193018|gb|EFW67658.1| Regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. EC1212]
gi|320194208|gb|EFW68840.1| Regulator of nucleoside diphosphate kinase [Escherichia coli
WV_060327]
gi|320198263|gb|EFW72867.1| Regulator of nucleoside diphosphate kinase [Escherichia coli
EC4100B]
gi|320638060|gb|EFX07824.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
str. G5101]
gi|320643466|gb|EFX12636.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H-
str. 493-89]
gi|320648801|gb|EFX17428.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H-
str. H 2687]
gi|320654387|gb|EFX22434.1| nucleoside diphosphate kinase regulator [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320660068|gb|EFX27598.1| nucleoside diphosphate kinase regulator [Escherichia coli O55:H7
str. USDA 5905]
gi|320664865|gb|EFX32000.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
str. LSU-61]
gi|323153670|gb|EFZ39918.1| regulator of nucleoside diphosphate kinase [Escherichia coli
EPECa14]
gi|323158937|gb|EFZ44948.1| regulator of nucleoside diphosphate kinase [Escherichia coli
E128010]
gi|323164059|gb|EFZ49867.1| regulator of nucleoside diphosphate kinase [Shigella sonnei 53G]
gi|323170735|gb|EFZ56385.1| regulator of nucleoside diphosphate kinase [Escherichia coli LT-68]
gi|323179914|gb|EFZ65471.1| regulator of nucleoside diphosphate kinase [Escherichia coli 1180]
gi|323184899|gb|EFZ70267.1| regulator of nucleoside diphosphate kinase [Escherichia coli 1357]
gi|323191248|gb|EFZ76512.1| regulator of nucleoside diphosphate kinase [Escherichia coli
RN587/1]
gi|323379570|gb|ADX51838.1| GreA/GreB family elongation factor [Escherichia coli KO11]
gi|323938372|gb|EGB34626.1| hypothetical protein ERCG_00408 [Escherichia coli E1520]
gi|323943025|gb|EGB39184.1| hypothetical protein ERDG_00362 [Escherichia coli E482]
gi|323945085|gb|EGB41147.1| hypothetical protein EREG_03269 [Escherichia coli H120]
gi|323952811|gb|EGB48679.1| hypothetical protein ERKG_00584 [Escherichia coli H252]
gi|323958369|gb|EGB54075.1| hypothetical protein ERLG_00359 [Escherichia coli H263]
gi|323963179|gb|EGB58747.1| hypothetical protein ERGG_00365 [Escherichia coli H489]
gi|323972149|gb|EGB67362.1| hypothetical protein ERHG_01878 [Escherichia coli TA007]
gi|323976407|gb|EGB71497.1| hypothetical protein ERFG_02843 [Escherichia coli TW10509]
gi|324006326|gb|EGB75545.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
57-2]
gi|324010532|gb|EGB79751.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
60-1]
gi|324016122|gb|EGB85341.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
117-3]
gi|324116685|gb|EGC10600.1| hypothetical protein ERBG_03361 [Escherichia coli E1167]
gi|326341362|gb|EGD65154.1| Regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. 1044]
gi|326345859|gb|EGD69598.1| Regulator of nucleoside diphosphate kinase [Escherichia coli
O157:H7 str. 1125]
gi|330910372|gb|EGH38882.1| regulator of nucleoside diphosphate kinase [Escherichia coli AA86]
gi|331037909|gb|EGI10129.1| regulator of nucleoside diphosphate kinase [Escherichia coli H736]
gi|331044519|gb|EGI16646.1| regulator of nucleoside diphosphate kinase [Escherichia coli M605]
gi|331049897|gb|EGI21955.1| regulator of nucleoside diphosphate kinase [Escherichia coli M718]
gi|331054885|gb|EGI26894.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA206]
gi|331060396|gb|EGI32360.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA143]
gi|331066186|gb|EGI38070.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA271]
gi|331070618|gb|EGI41981.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA280]
gi|331080709|gb|EGI51883.1| regulator of nucleoside diphosphate kinase [Escherichia coli H299]
gi|332094282|gb|EGI99333.1| regulator of nucleoside diphosphate kinase [Shigella boydii
5216-82]
gi|332097740|gb|EGJ02714.1| regulator of nucleoside diphosphate kinase [Shigella boydii
3594-74]
gi|332104099|gb|EGJ07445.1| regulator of nucleoside diphosphate kinase [Shigella sp. D9]
gi|332341957|gb|AEE55291.1| regulator of nucleoside diphosphate kinase [Escherichia coli
UMNK88]
gi|332760859|gb|EGJ91147.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
4343-70]
gi|332761226|gb|EGJ91512.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
2747-71]
gi|332763907|gb|EGJ94145.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
K-671]
gi|332768128|gb|EGJ98313.1| prokaryotic transcription elongation factor GreA/GreB [Shigella
flexneri 2930-71]
gi|333007955|gb|EGK27431.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
K-218]
gi|333010014|gb|EGK29449.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
K-272]
gi|333020847|gb|EGK40107.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
K-227]
gi|333021406|gb|EGK40656.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
K-304]
Length = 136
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 VATHLEVLELEY 126
>gi|194432543|ref|ZP_03064829.1| regulator of nucleoside diphosphate kinase [Shigella dysenteriae
1012]
gi|194419104|gb|EDX35187.1| regulator of nucleoside diphosphate kinase [Shigella dysenteriae
1012]
gi|332096848|gb|EGJ01838.1| regulator of nucleoside diphosphate kinase [Shigella dysenteriae
155-74]
Length = 136
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 VATHLEVLELEY 126
>gi|296447424|ref|ZP_06889349.1| GreA/GreB family elongation factor [Methylosinus trichosporium
OB3b]
gi|296255044|gb|EFH02146.1| GreA/GreB family elongation factor [Methylosinus trichosporium
OB3b]
Length = 155
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 24/149 (16%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G +I+ EL Q E +A GD R A
Sbjct: 30 VTPEGLAQIEAELARLQSE---------LDAAQQGDDKHV--LARVTRDLRYWNARRASA 78
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + A+V ++ FG V + ++ G +++Y++VG+ EAD GL+ +P+
Sbjct: 79 ELVHAIADV--------GQVRFGHRVVVEDEK-GQRRSYRLVGEDEADPSKGLIPYVAPL 129
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
A+ L+GK +GD V G + IL +
Sbjct: 130 AKELLGKSVGDSAEV----GRHSATILDI 154
>gi|77761289|ref|YP_244463.2| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. campestris str. 8004]
Length = 143
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G++ +V EADVQ +S+ +P
Sbjct: 43 DELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHSRISVLAPAG 102
Query: 128 RALIGKELGDIISVNAPGG 146
AL+G +G I APGG
Sbjct: 103 TALLGLSVGQSIDWRAPGG 121
>gi|297518602|ref|ZP_06936988.1| nucleoside diphosphate kinase regulator [Escherichia coli OP50]
Length = 136
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVHPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 VATHLEVLELEY 126
>gi|241765275|ref|ZP_04763255.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN]
gi|241365031|gb|EER59928.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN]
Length = 137
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL+ + RA+V+ + + + +TV +G + +V ++ D + +SI
Sbjct: 33 AELQAELDRADVVAPEEIPPNVVTMNSTVQFTMLETGKEFCLTLVYPRDMDGSADRISIL 92
Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+P+ AL+G +GD ++ PGG+ T + +++
Sbjct: 93 APVGGALLGLSVGDELAWPGPGGKSMTVRVKAIVY 127
>gi|220934850|ref|YP_002513749.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. HL-EbGR7]
gi|219996160|gb|ACL72762.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. HL-EbGR7]
Length = 137
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA V++ S + + + V + G + +V D +S+ +PI A
Sbjct: 39 LERANVVEPSQVPPTLVTMNSRVRFRVEPEGREFQRTLVYPSGMDGDEEKISVLAPIGSA 98
Query: 130 LIGKELGDIISVNAP-GGEKTYEILQVLW 157
L+G +GD I+ P GGE I+++L+
Sbjct: 99 LLGLSVGDSIAWPTPKGGEMNVRIMEILY 127
>gi|193063403|ref|ZP_03044493.1| regulator of nucleoside diphosphate kinase [Escherichia coli E22]
gi|260842837|ref|YP_003220615.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
O103:H2 str. 12009]
gi|192930987|gb|EDV83591.1| regulator of nucleoside diphosphate kinase [Escherichia coli E22]
gi|257757984|dbj|BAI29481.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
O103:H2 str. 12009]
Length = 136
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE-LENIITRAEVIDISTMSGDR 85
RP II +A L E Y R+A+ L + RA++ M D
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGL---------RIADALNAELDRAQMCSPEEMPHDV 53
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ + V + G+ + +V + + +S+ +P+ AL+G +GD I PG
Sbjct: 54 VTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPG 113
Query: 146 GEKT-YEILQVLW 157
G T E+L++ +
Sbjct: 114 GVATHLEVLELEY 126
>gi|254822184|ref|ZP_05227185.1| transcription elongation factor GreA [Mycobacterium intracellulare
ATCC 13950]
Length = 155
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/141 (16%), Positives = 54/141 (38%), Gaps = 14/141 (9%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ + ++++Q+EL + + + A G S N + A + R+
Sbjct: 8 WISPQAYERLQRELATLR---------ELCDTNAVG--SANDDNSIAVQRAWQV--RIRR 54
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ ++ A V + G G +++ ++G+ + + + SI SP
Sbjct: 55 IHELLVDAVVGEDPPDDG-IAEPGMVLTIRYDDTGEVETFLFSVRGAEYGGMEVYSIRSP 113
Query: 126 IARALIGKELGDIISVNAPGG 146
+ A+ G G+ + P G
Sbjct: 114 LGAAIAGARPGEQRTYTLPSG 134
>gi|254774710|ref|ZP_05216226.1| transcription elongation factor GreA [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 155
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 14/142 (9%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ + ++++Q+EL + + + A G S N E A + R+
Sbjct: 8 WISPQAYERLQRELATLR---------ELCDTNAVG--SANDENSIAVQRAWQV--RIRR 54
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ ++ A V + G G +++ ++G+ + + + SI SP
Sbjct: 55 IHELLVDAVVGEDPPDDG-IAEPGMVLTIRYDDTGEVETFLFSVRGAEYGGMEVYSIRSP 113
Query: 126 IARALIGKELGDIISVNAPGGE 147
+ A+ G G+ + P G
Sbjct: 114 LGAAIAGARPGEQRTYTLPSGV 135
>gi|114320917|ref|YP_742600.1| GreA/GreB family elongation factor [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227311|gb|ABI57110.1| GreA/GreB family elongation factor [Alkalilimnicola ehrlichii
MLHE-1]
Length = 137
Score = 72.2 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
ERP I+ + +A DL ++ AEL+ + RAE+++ +
Sbjct: 3 ERPNIVISTLDADRLYDLLDSLPAGGVPSK--------AELKAELERAEIVEPEDIPPTV 54
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP- 144
++ +TV +S ++ +V ++ D SG +S+ +P+ AL+G GD I P
Sbjct: 55 VSMNSTVRFRVASSSEEFTLTLVYPKDMDATSGKISVLAPVGSALLGLSQGDEIEWPKPG 114
Query: 145 GGEKTYEILQVLW 157
GG I ++L+
Sbjct: 115 GGVLRVRIEEILY 127
>gi|260062078|ref|YP_003195158.1| nucleoside diphosphate kinase regulator [Robiginitalea biformata
HTCC2501]
gi|88783640|gb|EAR14811.1| nucleoside diphosphate kinase regulator [Robiginitalea biformata
HTCC2501]
Length = 139
Score = 72.2 bits (176), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 6/110 (5%)
Query: 47 AEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106
A Y A Q+ + +L + A+++D + M D + F + +++ +G + Q
Sbjct: 24 AHYHDATLWQS-----IQKLLTELDSAKIVDEAEMQNDVVRFHSIITVT-SENGWSRRVQ 77
Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+V E DV +SI +P+ AL G GD +S P G K I +V
Sbjct: 78 LVLPPERDVSKDKISILTPMGIALFGYAEGDTVSWEFPSGPKRLRIEKVE 127
>gi|333007715|gb|EGK27192.1| regulator of nucleoside diphosphate kinase [Shigella flexneri VA-6]
Length = 136
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLRDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 VATHLEVLELEY 126
>gi|320352605|ref|YP_004193944.1| GreA/GreB family elongation factor [Desulfobulbus propionicus DSM
2032]
gi|320121107|gb|ADW16653.1| GreA/GreB family elongation factor [Desulfobulbus propionicus DSM
2032]
Length = 137
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 45/93 (48%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +L +++ V+ M + + + V L + + G+ +V +E D Q VSI
Sbjct: 34 IRKLHYDMSQGHVVSAGEMPSNVVTTHSWVVLCDLSDGEVFGLTLVFPEEVDSQGNRVSI 93
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S I ALIG++ GD I+ + P G + I +
Sbjct: 94 LSSIGAALIGRQKGDTIAYSTPSGIRRCLITTI 126
>gi|307729138|ref|YP_003906362.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
gi|307583673|gb|ADN57071.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
Length = 139
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L++++ RA ++D + + + + +LV++ SG+ + +V EAD G +++ S
Sbjct: 36 MLDDVLERAVIVDSREIPANVLTMNSQATLVDEASGEHMTWTVVYPPEADFAHGRLNVFS 95
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
P+ AL+G + G+ I P G EK ++ ++L+
Sbjct: 96 PVGLALLGAKRGEQIRFMPPSGDEKVLKLEKILY 129
>gi|118463685|ref|YP_881203.1| transcription elongation factor GreA [Mycobacterium avium 104]
gi|118164972|gb|ABK65869.1| transcription elongation factor GreA [Mycobacterium avium 104]
Length = 155
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 56/141 (39%), Gaps = 14/141 (9%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
++ + +++Q+EL + + + A G ++ E A + R+
Sbjct: 8 WISPQAHERLQRELATLR---------ELRDTSAVGSATD--ENSLAVQRAWQL--RIHR 54
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+ +++ A V D G G +++ ++G+ + + + + + SI SP
Sbjct: 55 IHDLLVNAVVGDDPPDDG-VAEPGMVLTIRYDDTGEIETFLLSVRGAEYDGTEVYSIRSP 113
Query: 126 IARALIGKELGDIISVNAPGG 146
+ A+ G G+ S P G
Sbjct: 114 LGAAIAGARPGEQRSYILPNG 134
>gi|146299949|ref|YP_001194540.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae
UW101]
gi|146154367|gb|ABQ05221.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae
UW101]
Length = 132
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 47 AEYQAAKEL-----QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101
++YQ +EL + N +L + RA + S + I + V++ + +
Sbjct: 10 SDYQFLRELILKSKNSTNTKEANQLSQELDRAVISKESELDSSVIRINSLVTIEDVKANK 69
Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ QIV ADV+ +SI +P++ A+IG + D + P G KT +I+ V
Sbjct: 70 QMKIQIVLPSYADVKQSKISILAPLSVAIIGFKENDEVDWELPAGIKTLKIVAV 123
>gi|325914289|ref|ZP_08176639.1| transcription elongation factor [Xanthomonas vesicatoria ATCC
35937]
gi|325539544|gb|EGD11190.1| transcription elongation factor [Xanthomonas vesicatoria ATCC
35937]
Length = 172
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA ++ + GD + + + ++ G++ +V EADVQ G +S+ +P+
Sbjct: 69 DELGRARLLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAPVG 128
Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQVL 156
AL+G +G I P G + + V
Sbjct: 129 SALLGLSVGQSIDWRTPDGRDLRLRVTAVQ 158
>gi|319795584|ref|YP_004157224.1| grea/greb family elongation factor [Variovorax paradoxus EPS]
gi|315598047|gb|ADU39113.1| GreA/GreB family elongation factor [Variovorax paradoxus EPS]
Length = 135
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L +++ AEV+ + D + + LV+ ++G ++ + ++A+ +G +S+
Sbjct: 31 AHLADLLASAEVMSSRAVPCDVVTMNSRAELVDVHTGRRQTLTVCFPKDAEPAAGFISVL 90
Query: 124 SPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
SP+ +L+G +GDI + P G+ E+ VL+
Sbjct: 91 SPVGSSLLGLRVGDIARWHTPNGDDCAAEVAAVLF 125
>gi|237730594|ref|ZP_04561075.1| nucleoside diphosphate kinase regulator [Citrobacter sp. 30_2]
gi|226906133|gb|EEH92051.1| nucleoside diphosphate kinase regulator [Citrobacter sp. 30_2]
Length = 136
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E + LN + RA++ TM D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAFAGLPIADALNA--------ELDRAQMCSPETMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPATMTDSNTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E++++ +
Sbjct: 115 TSTHLEVIELEY 126
>gi|156934868|ref|YP_001438784.1| nucleoside diphosphate kinase regulator [Cronobacter sakazakii ATCC
BAA-894]
gi|156533122|gb|ABU77948.1| hypothetical protein ESA_02716 [Cronobacter sakazakii ATCC BAA-894]
Length = 136
Score = 71.8 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +I +A L E + LN+ + RA ++ M D +
Sbjct: 3 RPALIINELDAERLDSLLEQPAFARLPVADALND--------ELDRARMVSPQAMPEDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + SG+ +V Q A +S+ +P+ AL+G +GD I P G
Sbjct: 55 TMNSRVKFRDLASGETYERLLVYPQNAGSSPEALSVMAPVGAALLGLRVGDAIRWPLPDG 114
Query: 147 -EKTYEILQVLW 157
E E+L++L+
Sbjct: 115 SETHIEVLELLY 126
>gi|66575033|gb|AAY50443.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
pv. campestris str. 8004]
Length = 135
Score = 71.4 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 40/79 (50%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G++ +V EADVQ +S+ +P
Sbjct: 35 DELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHSRISVLAPAG 94
Query: 128 RALIGKELGDIISVNAPGG 146
AL+G +G I APGG
Sbjct: 95 TALLGLSVGQSIDWRAPGG 113
>gi|149174289|ref|ZP_01852916.1| nucleoside diphosphate kinase regulator protein, putative
[Planctomyces maris DSM 8797]
gi|148846834|gb|EDL61170.1| nucleoside diphosphate kinase regulator protein, putative
[Planctomyces maris DSM 8797]
Length = 137
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 61/155 (39%), Gaps = 30/155 (19%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
KI +T + ++Q L + N Y + +
Sbjct: 4 QKIFITKTDYQRLQNLL-----------------LSDFTQAIGNKPYLSGLHAE------ 40
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ A +++ + D + +TV L + + + + Y +V Q+A+++ G +SI
Sbjct: 41 -------LAVAHIVESEEIPADIVTMNSTVRLRDLETDELETYTLVYPQDANIKEGKLSI 93
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+PI A++G +GD + A G + ++L+
Sbjct: 94 LTPIGTAILGYRIGDQLRSRALAGGSKIRVEEILF 128
>gi|167589792|ref|ZP_02382180.1| GreA/GreB family elongation factor [Burkholderia ubonensis Bu]
Length = 132
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
N A L+ ++ RA+++ + + + + ++L+++ + +K + IV +EA+++
Sbjct: 22 HNPRFQAMLDALLERADIVQPDAIKANVVTMNSQITLLDETNHEKTTWTIVYPEEANLEQ 81
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
G +++ SP+ AL+G + G ++ V P G + ++ ++++
Sbjct: 82 GRLNVFSPVGMALLGTQRGQLVKVMQPSGTEKLMKVAEIVF 122
>gi|311280477|ref|YP_003942708.1| GreA/GreB family elongation factor [Enterobacter cloacae SCF1]
gi|308749672|gb|ADO49424.1| GreA/GreB family elongation factor [Enterobacter cloacae SCF1]
Length = 136
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E + ++ LN+ + RA++ +M D +
Sbjct: 3 RPAIIINEFDAERIDRLLEQPAWASSPVADALND--------ELDRAQMCAPESMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ + V + +G+++ +V + S +S+ +P+ AL+G +G I P G
Sbjct: 55 SMNSKVRFRDLTTGEERVRTLVFPTQMTDSSTQLSVLAPVGAALLGLRVGSTIHWELPNG 114
Query: 147 EKT-YEILQVLW 157
T E+L++L+
Sbjct: 115 TATHLEVLELLY 126
>gi|74095577|emb|CAJ27343.1| conserved hypothetical protein [Cronobacter sakazakii]
Length = 136
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +I +A L E + LN+ + RA ++ M D +
Sbjct: 3 RPALIINELDAERLDSLLEQPAFARLPVADALND--------ELDRARMVSPQAMPEDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + SG+ +V Q A +S+ +P+ AL+G +GD I P G
Sbjct: 55 TMNSRVKFSDLASGETYERLLVYPQNAGSSPEALSVMAPVGAALLGLRVGDAIRWPLPDG 114
Query: 147 -EKTYEILQVLW 157
E E+L++L+
Sbjct: 115 SETHIEVLELLY 126
>gi|325528774|gb|EGD05833.1| GreA/GreB family elongation factor [Burkholderia sp. TJI49]
Length = 132
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
N L+ ++ RA+++ + + + + ++L+++ + ++ + IV A+++
Sbjct: 22 HNPRFQTMLDTLLERADIVRPDAIKANVVTMNSQITLLDETTQEQATWTIVYPDAANLEL 81
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
G +++ SP+ AL+G + G ++ V P G EK ++ ++++
Sbjct: 82 GRLNVFSPVGMALLGTQRGQLVKVTQPSGAEKLMKVAEIVF 122
>gi|283834084|ref|ZP_06353825.1| regulator of nucleoside diphosphate kinase [Citrobacter youngae
ATCC 29220]
gi|291070230|gb|EFE08339.1| regulator of nucleoside diphosphate kinase [Citrobacter youngae
ATCC 29220]
Length = 136
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E + LN + RA++ TM D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAFAGLPIADALNA--------ELDRAQMCSPETMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V S +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPANMTDSSTQLSVMAPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E++++ +
Sbjct: 115 TSTHLEVIELEY 126
>gi|238893687|ref|YP_002918421.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae
NTUH-K2044]
gi|238546003|dbj|BAH62354.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
Length = 136
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E + + LNE + RA+++ M D +
Sbjct: 3 RPAIIINELDAERIDRLLEQPAFANSPVADALNE--------ELDRAQMLAPEAMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + SG+++ +V + + +S+ +P+ AL+G ++G I PGG
Sbjct: 55 TMNSRVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAPVGAALLGLKVGSTIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++L+
Sbjct: 115 ASTHLEVLELLY 126
>gi|212711074|ref|ZP_03319202.1| hypothetical protein PROVALCAL_02143 [Providencia alcalifaciens DSM
30120]
gi|212686242|gb|EEB45770.1| hypothetical protein PROVALCAL_02143 [Providencia alcalifaciens DSM
30120]
Length = 136
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P II +A L E A Y + LN+ + RA+++ + D +
Sbjct: 4 PTIIINDLDAERLDALMEQAAYAGTPVAEALND--------ELDRADIVSPQEIPADVVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+TV ++ S +++ +V + +S+ +PI AL+G + D IS P G
Sbjct: 56 MNSTVRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWALPNGV 115
Query: 148 KT-YEILQVLW 157
+T +L++++
Sbjct: 116 ETRVRVLEIVY 126
>gi|85715886|ref|ZP_01046864.1| transcription elongation factor GreA/GreB region [Nitrobacter sp.
Nb-311A]
gi|85697293|gb|EAQ35173.1| transcription elongation factor GreA/GreB region [Nitrobacter sp.
Nb-311A]
Length = 150
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 24 QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIST--- 80
Q P I + + L+E A + + + E I +ID +
Sbjct: 6 QTRLPAIAISAHDIDRLRHLAEAAMEKYPTTAE-FLAREIDRAEIIPADRSIIDDISGLR 64
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
+ + + V+ V+ SG+K+ +V ++ADV +G +SI SPI ALIG G I
Sbjct: 65 RKINLVTMQSEVTFVDDISGEKRKVVLVYPEDADVDAGKISILSPIGAALIGLSTGQSIE 124
Query: 141 VNAP-GGEKTYEILQVL 156
P GG ++ ++ V
Sbjct: 125 FQTPSGGWRSLTVMAVS 141
>gi|330820196|ref|YP_004349058.1| GreA/GreB family elongation factor [Burkholderia gladioli BSR3]
gi|327372191|gb|AEA63546.1| GreA/GreB family elongation factor [Burkholderia gladioli BSR3]
Length = 132
Score = 71.4 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 54/109 (49%), Gaps = 2/109 (1%)
Query: 51 AAKELQNLNEGRM-AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
A E + R+ A L+ ++ RA++++ M + + + +L ++ + + + +V
Sbjct: 14 ARLEKHAERDTRLQAMLDTLLERADIVNADAMKANVVTMNSQFTLTDEATHEAITWTLVY 73
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+A +G +++ SP+ AL+G G+ +++ P G + +++
Sbjct: 74 PDQARSDAGRLNVFSPVGMALLGARQGEHVNITLPNGVAGRMTVSAIVY 122
>gi|91975331|ref|YP_567990.1| transcription elongation factor GreA/GreB region [Rhodopseudomonas
palustris BisB5]
gi|91681787|gb|ABE38089.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
BisB5]
Length = 138
Score = 71.0 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 17/140 (12%)
Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
+Q EL P I + + +++E A + + L I RAE
Sbjct: 5 LQSEL--------PPITLRMCDVERLRNIAEAASDKYPQT--------ADFLAREIERAE 48
Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134
++ S + I G+ V+ + SG ++ +V + ADV++ +SI +PI ALIG
Sbjct: 49 ILPDSQLLPGLIMMGSEVTFRDDISGQERCVTLVYPEAADVEANKISIITPIGAALIGLS 108
Query: 135 LGDIISVNAPGGE-KTYEIL 153
G I PGG ++ ++
Sbjct: 109 AGQTIEFQTPGGRWRSLTVI 128
>gi|183222143|ref|YP_001840139.1| putative transcription elongation factor [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
gi|189912206|ref|YP_001963761.1| transcription elongation factor [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167776882|gb|ABZ95183.1| Transcription elongation factor [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Ames)']
gi|167780565|gb|ABZ98863.1| Putative transcription elongation factor [Leptospira biflexa
serovar Patoc strain 'Patoc 1 (Paris)']
Length = 138
Score = 71.0 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 53/103 (51%)
Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
+N + + +L I RA+ +D + + + + + + + K +++V ++++
Sbjct: 26 KRNKTDANVQDLLGEIERAQKVDSKQIPSNVVTMNSVIEIKNLEGIEFKEFRLVYPEDSN 85
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ +SI +PIA A IG + GD+I N P G ++I ++ +
Sbjct: 86 LDQNQISILAPIATASIGYKTGDVIFWNVPDGVYRFQITEIKY 128
>gi|152995644|ref|YP_001340479.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1]
gi|150836568|gb|ABR70544.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1]
Length = 137
Score = 71.0 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 9/134 (6%)
Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
+RP+I + +A + ++ Y +L+ I RAE+++ M +
Sbjct: 2 MQRPQITISSLDAVRLEKILDSLSYSQFPNK--------DDLQEEINRAEIVEPRDMPDN 53
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
+ +TV+ +S + + +V ++A+ VS+ +P+ AL+G + GD I P
Sbjct: 54 IVTMNSTVTFKVLSSEKEFSKTLVYPKDANGAEDTVSVLAPVGSALLGLKEGDQIDWPKP 113
Query: 145 GGEK-TYEILQVLW 157
G+ + I++V +
Sbjct: 114 NGDVLSVVIMKVDY 127
>gi|255531969|ref|YP_003092341.1| transcription elongation factor GreA/GreB domain-containing protein
[Pedobacter heparinus DSM 2366]
gi|255344953|gb|ACU04279.1| transcription elongation factor GreA/GreB domain protein
[Pedobacter heparinus DSM 2366]
Length = 125
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 47/91 (51%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+L+ + A + + D + + + +G + +++V +EA++++ VS+ +
Sbjct: 32 KLQAELKAATIYTEEELPSDVVCLKSEARIANVKTGKEFTFKLVMPEEANIKAQKVSVFA 91
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
PI AL G GD I+ P G + ++IL+V
Sbjct: 92 PIGIALFGYRTGDSINWEMPDGIQEFKILEV 122
>gi|300790568|ref|YP_003770859.1| transcription elongation factor GreA [Amycolatopsis mediterranei
U32]
gi|299800082|gb|ADJ50457.1| transcription elongation factor GreA [Amycolatopsis mediterranei
U32]
Length = 151
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ ++++E+ + +R + E GD ++ A+ E + ++A+L
Sbjct: 9 LSPAARSQLEKEIENLRA-QRAALAPQPGEQERTGDAADQADVIDRAEAAARLDRQIADL 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ ++ G VSL + GD++ +Q+V D + ++ SP+
Sbjct: 68 AAKMEHG------GYGNSQLPDGTVVSLRFAD-GDEETFQVVTVPGEDADA--ITSDSPL 118
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
AL+G + GD I+ P G+ +++
Sbjct: 119 GLALVGAKAGDEITYRTPRGDAKATVVK 146
>gi|238799365|ref|ZP_04642803.1| Regulator of nucleoside diphosphate kinase [Yersinia mollaretii
ATCC 43969]
gi|238716795|gb|EEQ08673.1| Regulator of nucleoside diphosphate kinase [Yersinia mollaretii
ATCC 43969]
Length = 152
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 9/142 (6%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
E+ +P I +A L + Q LNE + RAE++
Sbjct: 9 AEIELESGMTKPTITINELDAERLDALLAQPAFAGTVVAQALNE--------ELDRAEIL 60
Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136
+ + D + + V + N+ ++ +V + +S+ +P+ AL+G +
Sbjct: 61 PPNAIPADVVTMNSRVRFRDLNNQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGLHVN 120
Query: 137 DIISVNAPGGEKT-YEILQVLW 157
D IS PGG++T +L++L+
Sbjct: 121 DEISWKLPGGDETRITVLELLY 142
>gi|291326552|ref|ZP_06124973.2| regulator of nucleoside diphosphate kinase [Providencia rettgeri
DSM 1131]
gi|291313526|gb|EFE53979.1| regulator of nucleoside diphosphate kinase [Providencia rettgeri
DSM 1131]
Length = 143
Score = 71.0 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P II +A L E Y + LN+ + RA+++ + D +
Sbjct: 11 PTIIINDLDAERLDALMEQPAYAGTPVAEALND--------ELDRADILSPQEIPADVVT 62
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+TV ++ S +++ +V + +S+ +PI AL+G + D IS P G
Sbjct: 63 MNSTVRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWELPNGV 122
Query: 148 KT-YEILQVLW 157
+T +L++++
Sbjct: 123 QTRVRVLEIVY 133
>gi|319784595|ref|YP_004144071.1| transcription elongation factor GreA/GreB domain-containing protein
[Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317170483|gb|ADV14021.1| transcription elongation factor GreA/GreB domain-containing protein
[Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 157
Score = 71.0 bits (173), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 6/135 (4%)
Query: 20 RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIS 79
+ R + + D+ AE +A +E + + AE+
Sbjct: 25 QHRNLVTERGLAQIEENLADLRDILAKAERKADRERIAVVSRDLRYWTARRESAELSVPE 84
Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
S D + FG V++ E + G K +++IVG+ EAD G +S SP+A AL GK++GD+
Sbjct: 85 PGS-DVVRFGMGVTI-ESDDGKKVHWKIVGEDEADPTKGSISHVSPMAVALFGKKIGDLA 142
Query: 140 SVNAPGGEKTYEILQ 154
SVN K +EI++
Sbjct: 143 SVNG----KEWEIVK 153
>gi|254254276|ref|ZP_04947593.1| Prokaryotic transcription elongation factor GreA/GreB [Burkholderia
dolosa AUO158]
gi|124898921|gb|EAY70764.1| Prokaryotic transcription elongation factor GreA/GreB [Burkholderia
dolosa AUO158]
Length = 132
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
N A L+ ++ RA+++ + + + + ++LV++ + ++ + IV A+++
Sbjct: 22 HNPRFQAMLDTLLERADIVRPDAIKANVVTMNSQITLVDEATQEQATWTIVYPDAANLEL 81
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
G +++ SP+ AL+G + G ++ V P G EK ++ ++++
Sbjct: 82 GRLNVFSPVGMALLGTQRGQMVKVMQPSGIEKLMKVAEIVF 122
>gi|157146775|ref|YP_001454094.1| nucleoside diphosphate kinase regulator [Citrobacter koseri ATCC
BAA-895]
gi|157083980|gb|ABV13658.1| hypothetical protein CKO_02549 [Citrobacter koseri ATCC BAA-895]
Length = 136
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E + LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAFAGLPIADALNA--------ELDRAQMCSPEAMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + +S+ +P+ AL+G +GD I + PGG
Sbjct: 55 TMNSRVKFRNLSDGEIRVRTLVYPANMTDSNTQLSVMAPVGAALLGLRVGDTIHWDLPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 ASTHLEVLELEY 126
>gi|90420487|ref|ZP_01228394.1| possible transcription elongation factor, GreA/GreB family
[Aurantimonas manganoxydans SI85-9A1]
gi|90335215|gb|EAS48968.1| possible transcription elongation factor, GreA/GreB family
[Aurantimonas manganoxydans SI85-9A1]
Length = 158
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 24/150 (16%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G I E+ ER + + A +++ + Y A+
Sbjct: 29 VTPRGLSLIDAEIAALN--ERKEAARQADDKIAIANINRDLRYWNARRATAELIR----- 81
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+G FG+ VS+ E+ G + + IVG EAD +GL+S SP+
Sbjct: 82 ------------PRDTGGTAQFGSVVSI-EREDGRTQQFTIVGIDEADPSAGLISYLSPL 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
AR+LIG+ +GDI+ G EI+ +
Sbjct: 129 ARSLIGRTVGDIVR----AGTADAEIIAIS 154
>gi|206580755|ref|YP_002239725.1| regulator of nucleoside diphosphate kinase [Klebsiella pneumoniae
342]
gi|288936567|ref|YP_003440626.1| GreA/GreB family elongation factor [Klebsiella variicola At-22]
gi|290510377|ref|ZP_06549747.1| nucleoside diphosphate kinase regulator [Klebsiella sp. 1_1_55]
gi|206569813|gb|ACI11589.1| regulator of nucleoside diphosphate kinase [Klebsiella pneumoniae
342]
gi|288891276|gb|ADC59594.1| GreA/GreB family elongation factor [Klebsiella variicola At-22]
gi|289777093|gb|EFD85091.1| nucleoside diphosphate kinase regulator [Klebsiella sp. 1_1_55]
Length = 136
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E + LN+ + RA+++ M D +
Sbjct: 3 RPAIIINELDAERIDRLLEQPAFANLPVADALND--------ELDRAQMLAPEAMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + SG+++ +V + + +S+ +P+ AL+G ++G I PGG
Sbjct: 55 TMNSKVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAPVGAALLGLKVGSTIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++L+
Sbjct: 115 ASTHLEVLELLY 126
>gi|152969224|ref|YP_001334333.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|262041289|ref|ZP_06014500.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330006064|ref|ZP_08305482.1| regulator of nucleoside diphosphate kinase [Klebsiella sp. MS 92-3]
gi|150954073|gb|ABR76103.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|259041405|gb|EEW42465.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328536002|gb|EGF62415.1| regulator of nucleoside diphosphate kinase [Klebsiella sp. MS 92-3]
Length = 140
Score = 70.6 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E + + LNE + RA+++ M D +
Sbjct: 7 RPAIIINELDAERIDRLLEQPAFANSPVADALNE--------ELDRAQMLAPEAMPHDVV 58
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + SG+++ +V + + +S+ +P+ AL+G ++G I PGG
Sbjct: 59 TMNSRVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAPVGAALLGLKVGSTIHWELPGG 118
Query: 147 EKT-YEILQVLW 157
T E+L++L+
Sbjct: 119 ASTHLEVLELLY 130
>gi|221065879|ref|ZP_03541984.1| GreA/GreB family elongation factor [Comamonas testosteroni KF-1]
gi|220710902|gb|EED66270.1| GreA/GreB family elongation factor [Comamonas testosteroni KF-1]
Length = 135
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + RA+V+D + M + + +TV G +V ++ D + VSI +P
Sbjct: 34 LEAELDRADVLDPAEMPANVVTMNSTVRFTMLEIGKSSTLTLVYPKDMDGSADKVSIFAP 93
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ AL+G +GD + +P G+ T + + +
Sbjct: 94 VGIALLGLSVGDEFKMPSPTGQVTVRVDAIEF 125
>gi|146310806|ref|YP_001175880.1| nucleoside diphosphate kinase regulator [Enterobacter sp. 638]
gi|145317682|gb|ABP59829.1| GreA/GreB family elongation factor [Enterobacter sp. 638]
Length = 136
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E + + LN+ + RA++ +M D +
Sbjct: 3 RPTIIINELDAERIDRLLEKPAFASLPIADALND--------ELDRAQMCTAESMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + SG++ +V + S +S+ +P+ AL+G GD I PGG
Sbjct: 55 TMNSQVRFRDLTSGEEHTRTLVYPAQMTDSSTQLSVLAPVGAALLGLRTGDTIHWELPGG 114
Query: 147 -EKTYEILQVLW 157
E+L++L+
Sbjct: 115 ASAHLEVLELLY 126
>gi|114563174|ref|YP_750687.1| GreA/GreB family elongation factor [Shewanella frigidimarina NCIMB
400]
gi|114334467|gb|ABI71849.1| GreA/GreB family elongation factor [Shewanella frigidimarina NCIMB
400]
Length = 137
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++ELE + RA ++D + + +TV + S ++ +V ++ D++ +SI
Sbjct: 32 ISELEEELARAIIVDPKEIPTTIVTMNSTVKFTVEASREEFLMTLVYPKDLDLKGDKISI 91
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+P+ AL+G GD I P GG I ++ +
Sbjct: 92 LAPVGSALLGLAQGDQIEWPKPGGGLIKITINEIFY 127
>gi|289208904|ref|YP_003460970.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix]
gi|288944535|gb|ADC72234.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix]
Length = 136
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A+LE + RA+V+D + G + + V SG++ + +V ++ D G +SI
Sbjct: 32 ADLEAELDRADVVDSREIPGTVVTMNSKVRFRVTESGEEFSLTLVYPRDVDDSGGTLSIL 91
Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+P+ AL+G GD I P GG+ I V +
Sbjct: 92 APVGSALLGLSEGDEIEWPRPGGGQMHVRIEAVEY 126
>gi|256829378|ref|YP_003158106.1| GreA/GreB family elongation factor [Desulfomicrobium baculatum DSM
4028]
gi|256578554|gb|ACU89690.1| GreA/GreB family elongation factor [Desulfomicrobium baculatum DSM
4028]
Length = 137
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + RA ++D + + +TV +G++ +V D Q +SI +P
Sbjct: 35 LEEELDRARIVDPKNVPPTVVTMNSTVKFKLMPAGEEFCLTLVYPGRVDDQGTTISILAP 94
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+ AL+G LGD I P GG I ++++
Sbjct: 95 VGSALLGLSLGDEIQWPRPGGGMLQVRIEEIVY 127
>gi|260597037|ref|YP_003209608.1| nucleoside diphosphate kinase regulator [Cronobacter turicensis
z3032]
gi|260216214|emb|CBA29098.1| Regulator of nucleoside diphosphate kinase [Cronobacter turicensis
z3032]
Length = 136
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP +I +A L E + LN+ + RA ++ M D +
Sbjct: 3 RPALIINELDAERLDSLLEQPAFARLPVADALND--------ELDRARMVSPQAMPEDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + SG+ +V Q A +S+ +P+ AL+G +GD I P G
Sbjct: 55 TMNSRVKFRDLASGETYERLLVYPQNAGNSPEALSVMAPVGAALLGLRVGDAIRWPLPDG 114
Query: 147 -EKTYEILQVLW 157
E E+L++L+
Sbjct: 115 SETHIEVLELLY 126
>gi|82702067|ref|YP_411633.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC
25196]
gi|82410132|gb|ABB74241.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC
25196]
Length = 137
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL+ + RAE+++ + + +TV +SG +V ++ D +S+
Sbjct: 33 AELQAELERAEIVEPEQIPPTVVTMNSTVRFSIDSSGQDFRLTLVYPKDVDGSGNKISVL 92
Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+P+ AL+G GD I P GG I ++++
Sbjct: 93 APVGSALLGLSTGDEIEWPRPGGGTIKVRIEEIIY 127
>gi|88813317|ref|ZP_01128556.1| GreA/GreB family elongation factor [Nitrococcus mobilis Nb-231]
gi|88789489|gb|EAR20617.1| GreA/GreB family elongation factor [Nitrococcus mobilis Nb-231]
Length = 137
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + RAEV+ + + + V +NSG++ +V ++ + +S+ +P
Sbjct: 35 LQAELDRAEVVPPEQVPPSVVTMNSAVRFSIENSGEEFCLTLVYPKDVGGNADRISVLAP 94
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+ AL+G +GD + P GG ++++++
Sbjct: 95 VGSALLGLSVGDELEWPRPGGGVLRVRVVEIVY 127
>gi|78061874|ref|YP_371782.1| GreA/GreB family elongation factor [Burkholderia sp. 383]
gi|77969759|gb|ABB11138.1| GreA/GreB family elongation factor [Burkholderia sp. 383]
Length = 132
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
N L+ ++ RA+++ + + + + ++L+++ + ++ + IV A+++
Sbjct: 22 HNPRFQTMLDTLLERADIVQPDAIKANVVTMNSQITLLDEATQEQATWTIVYPDAANLEL 81
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
G +++ SP+ AL+G + G ++ V P G EK ++ +++
Sbjct: 82 GRLNVFSPVGMALLGTQRGQMVKVTQPSGAEKLMKVAAIVF 122
>gi|42521926|ref|NP_967306.1| regulator of nucleoside diphosphate kinase [Bdellovibrio
bacteriovorus HD100]
gi|39574456|emb|CAE77960.1| regulator of nucleoside diphosphate kinase [Bdellovibrio
bacteriovorus HD100]
Length = 138
Score = 70.6 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 46 NAEYQAAKELQNLNEGRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104
+ ++ L + EG AE LE ++RA VI + + + + V +++ SG +
Sbjct: 15 DQDFHRLSALVSQVEGPFAEALEEELSRANVIAQKEIPKNVVTMNSRVQFLDEVSGQESE 74
Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+V Q+A ++ G +SI +P+ AL+G +G I+ P G+ K ++ V +
Sbjct: 75 MTLVYPQDAKLEEGRLSILAPVGIALLGLSVGQEINWKLPNGQSKKLKVQAVTY 128
>gi|309700850|emb|CBJ00147.1| regulator of nucleoside diphosphate kinase [Escherichia coli ETEC
H10407]
Length = 136
Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II + L E Y LN + RA++ M D +
Sbjct: 3 RPTIIINDLDTERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 VATHLEVLELEY 126
>gi|238758339|ref|ZP_04619517.1| Regulator of nucleoside diphosphate kinase [Yersinia aldovae ATCC
35236]
gi|238703462|gb|EEP96001.1| Regulator of nucleoside diphosphate kinase [Yersinia aldovae ATCC
35236]
Length = 150
Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 9/142 (6%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
E+ +P I +A L + Q LNE + RAE++
Sbjct: 7 AEIELESGMTKPTITINELDAERLDALLAQPAFAGTVVAQALNE--------ELDRAEIL 58
Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136
+ + D + + V + NS ++ +V + +S+ +P+ AL+G +
Sbjct: 59 PPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGMHVN 118
Query: 137 DIISVNAPGGEKT-YEILQVLW 157
D IS PGG++T +L++L+
Sbjct: 119 DEISWQLPGGDETRITVLELLY 140
>gi|319763041|ref|YP_004126978.1| transcription elongation factor grea/greb domain-containing protein
[Alicycliphilus denitrificans BC]
gi|330825121|ref|YP_004388424.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans
K601]
gi|317117602|gb|ADV00091.1| transcription elongation factor GreA/GreB domain-containing protein
[Alicycliphilus denitrificans BC]
gi|329310493|gb|AEB84908.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans
K601]
Length = 135
Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 43/92 (46%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + RA+V D M + + +TV SG +V +E D VSI +P
Sbjct: 34 LEAELDRADVFDPKDMPPNVVTMNSTVRFTMLESGKTNTLTLVYPKEMDGSGDKVSIFAP 93
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ AL+G +GD + +P G+ T + + +
Sbjct: 94 VGIALLGLAVGDEFQMPSPTGQVTVRVDGIEF 125
>gi|39995942|ref|NP_951893.1| nucleoside diphosphate kinase regulator protein [Geobacter
sulfurreducens PCA]
gi|39982706|gb|AAR34166.1| nucleoside diphosphate kinase regulator protein, putative
[Geobacter sulfurreducens PCA]
gi|298504957|gb|ADI83680.1| RNA polymerase-binding protein Rnk [Geobacter sulfurreducens KN400]
Length = 135
Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 46/95 (48%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +LE+ + A ++D + + + + V L + + + +V +A++ G +SI
Sbjct: 31 LQKLEDELASAMIVDPKDVPPNVVTMNSRVKLRDLRADKEMTISLVFPNDANIAEGKISI 90
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPI A++G GD + + K I +VL+
Sbjct: 91 LSPIGTAILGFGAGDTLDLAVRSFAKKIRIEEVLY 125
>gi|121595126|ref|YP_987022.1| GreA/GreB family elongation factor [Acidovorax sp. JS42]
gi|120607206|gb|ABM42946.1| GreA/GreB family elongation factor [Acidovorax sp. JS42]
Length = 135
Score = 70.2 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + RA+V D M + + +TV +G +V +E D VS+ +P
Sbjct: 34 LEAELDRADVFDPKDMPPNVVTMNSTVRFTLLETGKTNTLTLVYPKEMDGSGDKVSVFAP 93
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ AL+G +GD + +P G+ T + + +
Sbjct: 94 VGIALLGLGVGDEFQMPSPTGQVTVRVDAIEF 125
>gi|261344908|ref|ZP_05972552.1| regulator of nucleoside diphosphate kinase [Providencia rustigianii
DSM 4541]
gi|282567048|gb|EFB72583.1| regulator of nucleoside diphosphate kinase [Providencia rustigianii
DSM 4541]
Length = 136
Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P II +A L E Y + LN+ + RA+++ + D +
Sbjct: 4 PTIIINDLDAERLDALMEQPAYAGTPVAEALND--------ELDRADIVSPQEIPADVVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+T+ ++ S +++ +V + +S+ +PI AL+G + D IS P G
Sbjct: 56 MNSTIRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWALPNGV 115
Query: 148 KT-YEILQVLW 157
+T +L++++
Sbjct: 116 ETRVRVLEIVY 126
>gi|221196032|ref|ZP_03569079.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2M]
gi|221202706|ref|ZP_03575725.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2]
gi|221176640|gb|EEE09068.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2]
gi|221182586|gb|EEE14986.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2M]
Length = 132
Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 48 EYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107
+ ++ N A L+ ++ RAE++ + + + + ++L+++ + + + I
Sbjct: 12 DVARLEKYAEHNPRFQAMLDTLLERAEIVRSDAIKANVVTMNSQITLLDEATQEPATWTI 71
Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
V A+++ G +++ SP+ AL+G + G + V P G + ++ ++++
Sbjct: 72 VYPDAANLELGRLNVFSPVGMALLGTQRGQSVKVMQPSGTEKLMKVAEIVF 122
>gi|149243253|pdb|2PN0|A Chain A, Prokaryotic Transcription Elongation Factor GreaGREB FROM
Nitrosomonas Europaea
gi|149243254|pdb|2PN0|B Chain B, Prokaryotic Transcription Elongation Factor GreaGREB FROM
Nitrosomonas Europaea
gi|149243255|pdb|2PN0|C Chain C, Prokaryotic Transcription Elongation Factor GreaGREB FROM
Nitrosomonas Europaea
gi|149243256|pdb|2PN0|D Chain D, Prokaryotic Transcription Elongation Factor GreaGREB FROM
Nitrosomonas Europaea
Length = 141
Score = 70.2 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LE + RAEV+D + + +TV ++S ++ +V ++ D +SI +
Sbjct: 36 DLEAELARAEVVDPEEIPPTVVTXNSTVRFRVESSAEEFXLTLVYPKDVDTSGEKISILA 95
Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
P+ AL+G GD I P GG I++V +
Sbjct: 96 PVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY 129
>gi|134293951|ref|YP_001117687.1| GreA/GreB family elongation factor [Burkholderia vietnamiensis G4]
gi|134137108|gb|ABO58222.1| GreA/GreB family elongation factor [Burkholderia vietnamiensis G4]
Length = 132
Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
N L+ ++ RA+++ + + + + + ++L+++ S ++ + IV A+++
Sbjct: 22 HNPRFQTMLDTLLERADIVQPNAVKANVVTMNSQITLLDETSQEQTTWTIVYPDAANLEL 81
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
G +++ SP+ AL+G + G + V P G EK ++ +++
Sbjct: 82 GRLNVFSPVGMALLGTQRGQSVKVMQPSGIEKLMKVAAIVF 122
>gi|240170745|ref|ZP_04749404.1| transcription elongation factor GreA [Mycobacterium kansasii ATCC
12478]
Length = 160
Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/142 (19%), Positives = 61/142 (42%), Gaps = 16/142 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGD-LSENAEYQAAKELQNLNEGRMA 64
++S+ ++++Q++L AR D +N+ A ++Q + R+
Sbjct: 13 WISSQAYERLQRKLADL----------RQRSAREPADSDFDNS----APDVQRAWQTRIR 58
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+ +++ RA+V + G G +++ ++GD + + + + S S
Sbjct: 59 RIHDLLVRADVGEDPPDDG-IAEPGMVLTVRYHDTGDTETFLLGARGAEHCDVEVYSPRS 117
Query: 125 PIARALIGKELGDIISVNAPGG 146
P+ A+IG G+ S PGG
Sbjct: 118 PLGAAVIGAIPGEQRSFTLPGG 139
>gi|170767795|ref|ZP_02902248.1| regulator of nucleoside diphosphate kinase [Escherichia albertii
TW07627]
gi|170123283|gb|EDS92214.1| regulator of nucleoside diphosphate kinase [Escherichia albertii
TW07627]
Length = 136
Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 52/132 (39%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ M + +
Sbjct: 3 RPTIIINDLDAERIDILLEQPAYAGLPIADALNA--------ELDRAQMCSPEEMPHNVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + G+ + +V + + +S+ P+ AL+G +GD I PGG
Sbjct: 55 TMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMDPVGAALLGLRVGDTIHWELPGG 114
Query: 147 EKT-YEILQVLW 157
T E+L++ +
Sbjct: 115 TATHLEVLELEY 126
>gi|158426269|ref|YP_001527561.1| transcription elongation factor regulatory protein [Azorhizobium
caulinodans ORS 571]
gi|158333158|dbj|BAF90643.1| transcription elongation factor protein [Azorhizobium caulinodans
ORS 571]
Length = 159
Score = 70.2 bits (171), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 47 AEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106
+ QA + + A++++ + + FG TV+L+ + ++ ++
Sbjct: 56 GDVQADRTAMARATRDLRYYSARRATAQLVEPPEAP-ETVQFGVTVTLL-REDDRRQTFR 113
Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
IVG+ EAD G VS SP+A AL+GK +GD+ V G + EI ++
Sbjct: 114 IVGEDEADPAQGSVSYVSPLAAALMGKGVGDVALV---AG-REVEIEKI 158
>gi|91215744|ref|ZP_01252714.1| transcription elongation factor GreB [Psychroflexus torquis ATCC
700755]
gi|91186210|gb|EAS72583.1| transcription elongation factor GreB [Psychroflexus torquis ATCC
700755]
Length = 164
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/152 (21%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT +G + +++E +++ I+ +E R + +G++
Sbjct: 30 YVTPQGKEMLREEKSKLEKQRADLTIQDDTERR---------------RELTVIDGKLKL 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + A+V++ + I FGA V +G ++++IVG EA+++ ++ +SP
Sbjct: 75 LDERLNSAQVLNPEQQNKSEIRFGAHVKFK--MNGSIQDFKIVGVDEANIKEKKIAFTSP 132
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+A A+ K+ GD + EIL + +
Sbjct: 133 LAMAMTSKKKGDNFEFKLSQDSRPIEILGINY 164
>gi|172063609|ref|YP_001811260.1| GreA/GreB family elongation factor [Burkholderia ambifaria MC40-6]
gi|171996126|gb|ACB67044.1| GreA/GreB family elongation factor [Burkholderia ambifaria MC40-6]
Length = 132
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
N A L+ ++ RA+++ + + + + ++L+++ S ++ + IV A+++
Sbjct: 22 HNPRFQAMLDTLLERADIVQPDAIKANVVTMNSQITLLDEASQEQTTWTIVYPDAANLEL 81
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
G +++ SP+ AL+G + G ++ V P G EK ++ +++
Sbjct: 82 GRLNVFSPVGMALLGTQRGQLVKVLQPSGAEKLMKVAAIVF 122
>gi|171321848|ref|ZP_02910748.1| GreA/GreB family elongation factor [Burkholderia ambifaria MEX-5]
gi|171092867|gb|EDT38120.1| GreA/GreB family elongation factor [Burkholderia ambifaria MEX-5]
Length = 132
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
N A L+ ++ RA+++ + + + + ++L+++ S ++ + IV A+++
Sbjct: 22 HNPRFQAMLDTLLERADIVQPDAIKANVVTMNSQITLLDEASQEQTTWTIVYPDAANLEL 81
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
G +++ SP+ AL+G + G ++ V P G + ++ +++
Sbjct: 82 GRLNVFSPVGMALLGTQRGQLVKVLQPSGVEKLMKVAAIVF 122
>gi|30250064|ref|NP_842134.1| transcription elongation factor GreA/GreB [Nitrosomonas europaea
ATCC 19718]
gi|30139171|emb|CAD86041.1| Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas
europaea ATCC 19718]
Length = 137
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LE + RAEV+D + + +TV ++S ++ +V ++ D +SI +
Sbjct: 34 DLEAELARAEVVDPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPKDVDTSGEKISILA 93
Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
P+ AL+G GD I P GG I++V +
Sbjct: 94 PVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY 127
>gi|226329344|ref|ZP_03804862.1| hypothetical protein PROPEN_03249 [Proteus penneri ATCC 35198]
gi|225202530|gb|EEG84884.1| hypothetical protein PROPEN_03249 [Proteus penneri ATCC 35198]
Length = 136
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P II +A L E + + + LNE + RA+++ + + + +
Sbjct: 4 PTIIINELDAERLDSLLEQPAFADSPIAEALNE--------ELDRADIVTPADIPANIVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG- 146
+ V ++ + +++ +V + +S+ +P+ AL+G + D IS P G
Sbjct: 56 MNSKVRFMDLKNNEERTRTLVYPASLKDSATELSVMAPMGAALLGLAIDDEISWKLPNGL 115
Query: 147 EKTYEILQVLW 157
E ++L++L+
Sbjct: 116 ETKVKVLEILY 126
>gi|183597965|ref|ZP_02959458.1| hypothetical protein PROSTU_01315 [Providencia stuartii ATCC 25827]
gi|188022738|gb|EDU60778.1| hypothetical protein PROSTU_01315 [Providencia stuartii ATCC 25827]
Length = 136
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P II +A L E A Y LN+ + RA+++ + D +
Sbjct: 4 PTIIINDLDAERLDALLEQAAYAGTPVADALND--------ELDRADILSPQEIPADVVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+TV ++ S +++ +V + +S+ +PI AL+G + D IS P G
Sbjct: 56 MNSTVRFLDLISNEERTRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWALPNGV 115
Query: 148 KT-YEILQVLW 157
+T +L++++
Sbjct: 116 ETRVRVLEIIY 126
>gi|317494056|ref|ZP_07952472.1| prokaryotic transcription elongation factor [Enterobacteriaceae
bacterium 9_2_54FAA]
gi|316917829|gb|EFV39172.1| prokaryotic transcription elongation factor [Enterobacteriaceae
bacterium 9_2_54FAA]
Length = 136
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E + + + LN N + RAE++ M D +
Sbjct: 3 RPAIILNELDAARLDTLLEQPAFASLPVAEALN--------NELDRAEMLSPENMPADVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ V + +S ++ +V + +S+ +PI AL+G +GD I P G
Sbjct: 55 TMNSRVKFRDLSSKEEHVRTLVYPASLKDSAAELSVMAPIGAALLGLRVGDAIQWELPNG 114
Query: 147 EKT-YEILQVLW 157
+ T E+L++ +
Sbjct: 115 QTTHIEVLELQY 126
>gi|114332047|ref|YP_748269.1| GreA/GreB family elongation factor [Nitrosomonas eutropha C91]
gi|114309061|gb|ABI60304.1| GreA/GreB family elongation factor [Nitrosomonas eutropha C91]
Length = 137
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LE + RA+V+D + + +TV ++S ++ +V ++ D +SI +
Sbjct: 34 DLEAELARADVVDPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPKDVDTSGEKISILA 93
Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
P+ AL+G GD I P GG I++V +
Sbjct: 94 PVGSALLGLSQGDEIEWPKPGGGVLRVRIVEVTY 127
>gi|254250301|ref|ZP_04943621.1| Transcription elongation factor [Burkholderia cenocepacia PC184]
gi|124876802|gb|EAY66792.1| Transcription elongation factor [Burkholderia cenocepacia PC184]
Length = 132
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
N L+ ++ RA+++ + + + + + ++L+++ + ++ + IV A+++
Sbjct: 22 HNPRFQTMLDTLLERADIVQPNAIKANVVTMNSQITLLDEATQEQATWTIVYPDSANLEL 81
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
G +++ SP+ AL+G + G ++ V P G EK ++ +++
Sbjct: 82 GRLNVFSPVGMALLGTQRGQMVKVMQPSGAEKLMKVASIVF 122
>gi|295690226|ref|YP_003593919.1| GreA/Greb family elongation factor [Caulobacter segnis ATCC 21756]
gi|295432129|gb|ADG11301.1| GreA/GreB family elongation factor [Caulobacter segnis ATCC 21756]
Length = 160
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 19/149 (12%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT++G I+ EL + A GD + A A R A
Sbjct: 30 VTAEGLAHIEAELA---SARAAYAAAQSAGGAADGDRTAMA---RATRDLRYWSARRATA 83
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + +A E+ G + ++IVG+ EAD G VS +PI
Sbjct: 84 QLMERD---------PAKTVAQFGDRVTFEREDGRVQTFRIVGEDEADPAKGSVSYIAPI 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ARAL+GK +G+ APGGE EI +
Sbjct: 135 ARALLGKAVGETA--PAPGGEI--EITAI 159
>gi|302381565|ref|YP_003817388.1| GreA/GreB family elongation factor [Brevundimonas subvibrioides
ATCC 15264]
gi|302192193|gb|ADK99764.1| GreA/GreB family elongation factor [Brevundimonas subvibrioides
ATCC 15264]
Length = 158
Score = 69.5 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 17/135 (12%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G I L + EA A +A ++L+ + R
Sbjct: 30 VTPQGLAAIDDALAQARAAYGAAQASGSIEA------DRTAMARATRDLRYWSARR---- 79
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
A+V++ + R+ FG +V++ E+ G + ++IVG+ EAD +G VS SP+
Sbjct: 80 ----ANAQVVETAAE--GRVRFGGSVTI-EREDGRTQTWRIVGEDEADPANGSVSHVSPL 132
Query: 127 ARALIGKELGDIISV 141
ARAL GK +GD V
Sbjct: 133 ARALTGKGVGDEAVV 147
>gi|222111468|ref|YP_002553732.1| grea/greb family elongation factor [Acidovorax ebreus TPSY]
gi|221730912|gb|ACM33732.1| GreA/GreB family elongation factor [Acidovorax ebreus TPSY]
Length = 135
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + RA+V D M + + +TV +G +V +E D VS+ +P
Sbjct: 34 LEAELDRADVFDPKDMPPNVVTMNSTVRFTLLETGKTNTLTLVYPKEMDGSGDKVSVFAP 93
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ AL+G +GD + +P G+ T + + +
Sbjct: 94 VGIALLGLGVGDEFQMPSPTGQVTVRVDAIDF 125
>gi|107025987|ref|YP_623498.1| GreA/GreB family elongation factor [Burkholderia cenocepacia AU
1054]
gi|116692828|ref|YP_838361.1| GreA/GreB family elongation factor [Burkholderia cenocepacia
HI2424]
gi|170737905|ref|YP_001779165.1| GreA/GreB family elongation factor [Burkholderia cenocepacia MC0-3]
gi|206563773|ref|YP_002234536.1| putative transcription elongation factor [Burkholderia cenocepacia
J2315]
gi|105895361|gb|ABF78525.1| GreA/GreB family elongation factor [Burkholderia cenocepacia AU
1054]
gi|116650828|gb|ABK11468.1| GreA/GreB family elongation factor [Burkholderia cenocepacia
HI2424]
gi|169820093|gb|ACA94675.1| GreA/GreB family elongation factor [Burkholderia cenocepacia MC0-3]
gi|198039813|emb|CAR55787.1| putative transcription elongation factor [Burkholderia cenocepacia
J2315]
Length = 132
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 55/101 (54%), Gaps = 1/101 (0%)
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
N L+ ++ RA+++ + + + + ++L+++ + ++ + IV A+++
Sbjct: 22 HNPRFQTMLDTLLERADIVQPDAIKANVVTMNSQITLLDEATQEQATWTIVYPDAANLEL 81
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
G +++ SP+ AL+G + G ++ V P G EK ++ +++
Sbjct: 82 GRLNVFSPVGMALLGTQRGQMVKVMQPSGAEKLMKVAAIVF 122
>gi|197105386|ref|YP_002130763.1| transcription elongation factor GreA/GreB, family [Phenylobacterium
zucineum HLK1]
gi|196478806|gb|ACG78334.1| transcription elongation factor GreA/GreB, family [Phenylobacterium
zucineum HLK1]
Length = 161
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 23/151 (15%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VTS+G I++ L Q RI EA L + Y AA+
Sbjct: 28 YVTSRGLKLIERALADLDQ----RIAGCEDEA-QMAWLRRDQRYWAARR----------- 71
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
A+V++ S D +AFG V+ K+ G + ++VG+ EA+ G +S +P
Sbjct: 72 -----ANAQVVE-SPADPDEVAFGTRVTFR-KDGGAPETVELVGEDEAEPAQGRLSWVAP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ARA+IG G+ + + EIL V
Sbjct: 125 LARAMIGAMPGETVELETRTPAIRLEILAVE 155
>gi|117619344|ref|YP_857300.1| regulator of nucleoside diphosphate kinase [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
gi|117560751|gb|ABK37699.1| regulator of nucleoside diphosphate kinase [Aeromonas hydrophila
subsp. hydrophila ATCC 7966]
Length = 131
Score = 69.5 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + RAE+ + + M D + +TV +SG++ +V ++ +S+ +P
Sbjct: 29 LQEELDRAEMREPADMPPDVVTMNSTVRFKMPSSGNEFCLTLVYPKDVQGDESKISVLAP 88
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ AL+G ++GD I+ P G EIL+V++
Sbjct: 89 VGSALLGLKVGDSIAWPGPAGRTIEVEILEVVY 121
>gi|115358874|ref|YP_776012.1| GreA/GreB family elongation factor [Burkholderia ambifaria AMMD]
gi|170700327|ref|ZP_02891339.1| GreA/GreB family elongation factor [Burkholderia ambifaria
IOP40-10]
gi|115284162|gb|ABI89678.1| GreA/GreB family elongation factor [Burkholderia ambifaria AMMD]
gi|170134761|gb|EDT03077.1| GreA/GreB family elongation factor [Burkholderia ambifaria
IOP40-10]
Length = 132
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
N A L+ ++ RA+++ + + + + ++L+++ S ++ + IV A+++
Sbjct: 22 HNPRFQAMLDTLLERADIVQPDAIKANVVTMNSQITLLDEASQEQATWTIVYPDAANLEL 81
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
G +++ SP+ AL+G + G ++ V P G EK ++ +++
Sbjct: 82 GRLNVFSPVGMALLGTQRGQLVKVLQPSGAEKLMKVAAIVF 122
>gi|238782987|ref|ZP_04627015.1| Regulator of nucleoside diphosphate kinase [Yersinia bercovieri
ATCC 43970]
gi|238716190|gb|EEQ08174.1| Regulator of nucleoside diphosphate kinase [Yersinia bercovieri
ATCC 43970]
Length = 152
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 9/142 (6%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
E+ +P I +A L + Q LNE + RAE++
Sbjct: 9 AEIELESGMTKPTITINELDAERLDALLAQPAFAGTVVAQALNE--------ELDRAEIL 60
Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136
+ + D + + V + N+ ++ +V + +S+ +P+ AL+G +
Sbjct: 61 PPNAIPADVVTMNSRVRFRDLNNQEEHIRTLVYPASLKDSNDQLSVMAPLGAALLGLHVN 120
Query: 137 DIISVNAPGGEK-TYEILQVLW 157
D IS PGG++ +L++L+
Sbjct: 121 DEISWKLPGGDEARIIVLELLY 142
>gi|209884060|ref|YP_002287917.1| GreA/GreB family elongation factor [Oligotropha carboxidovorans
OM5]
gi|209872256|gb|ACI92052.1| GreA/GreB family elongation factor [Oligotropha carboxidovorans
OM5]
Length = 134
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
+ R+ AR G L AE AA + +E E+E RAE+ D +
Sbjct: 6 QTRLPAIAISARDAGRLRHLAE-VAAGQYPETSEFLAREIE----RAEIRAADQSMRDIV 60
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP-G 145
A + V+ + G + +V ++ADV +G +S+ +PI ALIG ++G I P G
Sbjct: 61 AMQSEVTFRDDIGGQARTVTLVYPEDADVAAGKISVLTPIGAALIGMQVGKSIEFQTPAG 120
Query: 146 GEKTYEILQVL 156
G ++ +++V+
Sbjct: 121 GWRSLTVIKVV 131
>gi|237748358|ref|ZP_04578838.1| GreA/GreB family elongation factor [Oxalobacter formigenes OXCC13]
gi|229379720|gb|EEO29811.1| GreA/GreB family elongation factor [Oxalobacter formigenes OXCC13]
Length = 130
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Query: 48 EYQAAKELQNLNEGR----MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK 103
+Y+ ++ LN+ R + EL++ + RA V++ + D I +T +++ S ++
Sbjct: 13 DYERLTQMLMLNKYRTLPGIDELQDELDRANVVEPEELPNDVITINSTARFLDETSNEQF 72
Query: 104 NYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
+V +AD + +S+ +P+ AL+G +G I PG +K ++L V
Sbjct: 73 EITLVYPDKADGAT-KISVLAPVGSALLGMSVGQSIPWQVPGRQKLLLKVLDVK 125
>gi|110835187|ref|YP_694046.1| nucleoside diphosphate kinase regulator [Alcanivorax borkumensis
SK2]
gi|110648298|emb|CAL17774.1| nucleoside diphosphate kinase regulator [Alcanivorax borkumensis
SK2]
Length = 133
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + RA V++ M D + + + E+ G + +V D VSI +P
Sbjct: 31 LEEELLRATVVEPKDMPADVVTMNSRIRCREQGRGREMCLTLVYPH--DTGPQRVSILAP 88
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+ AL+G +G I AP G+ EIL V +
Sbjct: 89 VGAALLGLSVGQSIDWPAPNGKVLKLEILAVEY 121
>gi|145298530|ref|YP_001141371.1| transcription elongation factor GreA/GreB [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142851302|gb|ABO89623.1| transcription elongation factor GreA/GreB [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 131
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + RAE+ + + M D + +TV +NS ++ +V ++ +S+ +P
Sbjct: 29 LQEELDRAEMREPADMPPDVVTMNSTVRFKMQNSENEFCLTLVYPKDVQGDESRISVLAP 88
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ AL+G ++GD I+ P G EIL+V++
Sbjct: 89 VGSALLGLKVGDSIAWPGPAGRTIQVEILEVVY 121
>gi|262395367|ref|YP_003287220.1| regulator of nucleoside diphosphate kinase [Vibrio sp. Ex25]
gi|262338961|gb|ACY52755.1| regulator of nucleoside diphosphate kinase [Vibrio sp. Ex25]
Length = 135
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
A + + ELE + RA V++ M + + +TV +V
Sbjct: 19 ALLDKMPNIAAELVELEAELDRATVLEPEQMPDNVVTMNSTVEFKFAGEDRTMTKTLVYP 78
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
E +SI +P+ ALIG +G + P KT EI+ + +
Sbjct: 79 SELKSSDD-ISIFAPVGSALIGLSVGQKLEWPMPNNQVKTIEIVDITY 125
>gi|299132174|ref|ZP_07025369.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2]
gi|298592311|gb|EFI52511.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2]
Length = 134
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 58/138 (42%), Gaps = 13/138 (9%)
Query: 23 QQEERPRIIKAISEARAYGDLSENA--EYQAAKELQNLNEGRMAELENIITRAEVIDIST 80
Q P I ++ +A L+E A Y E I RAE+
Sbjct: 5 LQTRLPAIAISVRDADRLRHLAEVAADRYPETAEFLAQ----------EIERAEIRSADQ 54
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
D +A + V+ + G + +V ++ADV +G +S+ +PI ALIG +G I
Sbjct: 55 SMRDIVAMQSEVTFRDDIGGQSRTVTLVYPEDADVGAGKISVLTPIGAALIGMSVGKSIE 114
Query: 141 VNAP-GGEKTYEILQVLW 157
P GG ++ + +VL
Sbjct: 115 FQTPAGGWRSLTVTKVLH 132
>gi|91224637|ref|ZP_01259898.1| nucleoside diphosphate kinase regulator [Vibrio alginolyticus
12G01]
gi|91190525|gb|EAS76793.1| nucleoside diphosphate kinase regulator [Vibrio alginolyticus
12G01]
Length = 135
Score = 69.1 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
A + + ELE + RA V++ M + + +TV +V
Sbjct: 19 ALLDKMPNIAAELVELEAELDRATVLEPEQMPDNVVTMNSTVEFKFSGEDRTMTKTLVYP 78
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
E +SI +P+ ALIG +G + P KT EI+ + +
Sbjct: 79 SELKSSDD-ISIFAPVGSALIGLSVGQKLEWPMPNNQVKTIEIVDITY 125
>gi|161520489|ref|YP_001583916.1| GreA/GreB family elongation factor [Burkholderia multivorans ATCC
17616]
gi|189353320|ref|YP_001948947.1| regulator of nucleoside diphosphate kinase [Burkholderia
multivorans ATCC 17616]
gi|221209737|ref|ZP_03582718.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD1]
gi|160344539|gb|ABX17624.1| GreA/GreB family elongation factor [Burkholderia multivorans ATCC
17616]
gi|189337342|dbj|BAG46411.1| regulator of nucleoside diphosphate kinase [Burkholderia
multivorans ATCC 17616]
gi|221170425|gb|EEE02891.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD1]
Length = 132
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
Query: 48 EYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107
+ ++ N A L+ ++ RA+++ + + + + ++L+++ + + + I
Sbjct: 12 DVARLEKYAEHNPRFQAMLDTLLERADIVRSDAIKANVVTMNSQITLLDEATQEPATWTI 71
Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
V A+++ G +++ SP+ AL+G + G + V P G + ++ ++++
Sbjct: 72 VYPDAANLELGRLNVFSPVGMALLGTQRGQSVKVMQPSGTEKLMKVAEIVF 122
>gi|329847111|ref|ZP_08262139.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Asticcacaulis biprosthecum C19]
gi|328842174|gb|EGF91743.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Asticcacaulis biprosthecum C19]
Length = 159
Score = 68.7 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT +G ++Q +A + A E ++ + A +
Sbjct: 30 VTPQGLAQLQA-----------AFAEAKAAYTAAQSSGEVSDDRTAMARAT---RDLRYY 75
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ A+ ++ T+ + FG TV++ E+ G + ++IVG+ EAD + G +S SP+
Sbjct: 76 TARLGSAQPVEPVTVP-QAVVFGCTVTI-ERADGRTQTFRIVGEDEADPKQGSISYVSPL 133
Query: 127 ARALIGKELGDIISVN 142
A+AL+GK L D + ++
Sbjct: 134 AQALMGKTLDDEVRLD 149
>gi|146280909|ref|YP_001171062.1| nucleoside diphosphate kinase regulator [Pseudomonas stutzeri
A1501]
gi|145569114|gb|ABP78220.1| regulator of nucleoside diphosphate kinase [Pseudomonas stutzeri
A1501]
gi|327479178|gb|AEA82488.1| nucleoside diphosphate kinase regulator [Pseudomonas stutzeri DSM
4166]
Length = 134
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE ++RA+V++ S M + + V ++ SG + +V +A + G VS+ +P
Sbjct: 34 LEQELSRAQVVERSEMPAGVVTMNSRVHCRDEGSGKDYHLTLVYPHDA-GKEGTVSVLAP 92
Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+ AL+G +G I APGG+ +L + +
Sbjct: 93 VGTALLGMSVGQHIDWPAPGGKMIKLTLLAIEY 125
>gi|254419345|ref|ZP_05033069.1| Prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Brevundimonas sp. BAL3]
gi|196185522|gb|EDX80498.1| Prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Brevundimonas sp. BAL3]
Length = 163
Score = 68.7 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
T + FG +VS+ E+ G + ++IVG+ EAD G VS SP+ARAL+GK +GD
Sbjct: 90 EPTADDGGVRFGGSVSI-EREDGRTQTWRIVGEDEADPAKGSVSHVSPLARALLGKRIGD 148
Query: 138 IISVNAPGGEKTYEILQV 155
V G ++ EI V
Sbjct: 149 EAVV---AG-QSVEITAV 162
>gi|264679555|ref|YP_003279462.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2]
gi|299530414|ref|ZP_07043837.1| GreA/GreB family elongation factor [Comamonas testosteroni S44]
gi|262210068|gb|ACY34166.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2]
gi|298721639|gb|EFI62573.1| GreA/GreB family elongation factor [Comamonas testosteroni S44]
Length = 135
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 44/92 (47%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + RA+V+D + + + + +TV +V ++ D + VSI +P
Sbjct: 34 LEAELDRADVLDPAEIPANVVTMNSTVRFTILEIAKTNTLTLVYPKDMDGSADKVSIFAP 93
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ AL+G +GD + +P G+ T + + +
Sbjct: 94 VGIALLGLSVGDEFKMPSPTGQVTVRVDAIEF 125
>gi|183985318|ref|YP_001853609.1| hypothetical protein MMAR_5350 [Mycobacterium marinum M]
gi|183178644|gb|ACC43754.1| conserved hypothetical protein [Mycobacterium marinum M]
Length = 161
Score = 68.3 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 10/162 (6%)
Query: 1 MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M +++ + D + EL +Q I+ ++ GD + AE +
Sbjct: 1 MSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEAD 114
+ R+ EL+ + S +G T + + G+ IV +
Sbjct: 61 VLTERIHELDRRLKAG----PSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVG 116
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ ++ SP+ +AL G++ GD ++ + P G E+L +
Sbjct: 117 HEYETLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIK 158
>gi|304310570|ref|YP_003810168.1| transcription elongation factor GreA/GreB [gamma proteobacterium
HdN1]
gi|301796303|emb|CBL44511.1| transcription elongation factor GreA/GreB [gamma proteobacterium
HdN1]
Length = 137
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 9/132 (6%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
+RP I + +A DL A+ + ELE + RA V++ +
Sbjct: 3 KRPEITISTLDAERLEDLL------ASLPKATFVGHK--ELEAELDRANVVEPHEVPPTV 54
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP- 144
+ + V ++S D+ +V ++ D +SI SP+ AL+G GD I P
Sbjct: 55 VTMNSKVKFNVESSSDEFELTLVYPKDMDASGKTISILSPVGSALLGLSQGDEIEWPKPG 114
Query: 145 GGEKTYEILQVL 156
GG ++ +V+
Sbjct: 115 GGLLKVKVKEVV 126
>gi|113869543|ref|YP_728032.1| transcription elongation factor GreA [Ralstonia eutropha H16]
gi|113528319|emb|CAJ94664.1| transcription elongation factor GreA [Ralstonia eutropha H16]
Length = 139
Score = 68.3 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
L++++ RA ++ + D + + +N+ +V AD +G +S+ S
Sbjct: 36 MLDSLLARATIVAPEEIPTDVVTMNTRLVCNLPGEQAPRNWTLVYPDAADFDAGRLSVLS 95
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
P+ +AL+G G +S P G E+ + + +
Sbjct: 96 PVGQALLGARAGQTVSYRLPDGREQQVSVAGIAF 129
>gi|86132956|ref|ZP_01051546.1| transcription elongation factor GreA/GreB family protein [Dokdonia
donghaensis MED134]
gi|85816474|gb|EAQ37662.1| transcription elongation factor GreA/GreB family protein [Dokdonia
donghaensis MED134]
Length = 167
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 16/153 (10%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VTS G ++++EL + L E E + + + G+
Sbjct: 30 YVTSHGLTQLKEELSTLDNK--------------ISTLDETDERER-RRALAVLNGKRNL 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L I A ++D I FGATV+ QIVG EA V+ ++ ++P
Sbjct: 75 LLERIQSARLLDHIK-DEGEIRFGATVTYTIAGMPKPITIQIVGVDEASVKDKKIAFTAP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IARALIGK++ + + EK I + ++
Sbjct: 134 IARALIGKKVDETTTFQLGNEEKKLTIKNIAYV 166
>gi|290476785|ref|YP_003469696.1| regulator of nucleoside diphosphate kinase [Xenorhabdus bovienii
SS-2004]
gi|289176129|emb|CBJ82934.1| regulator of nucleoside diphosphate kinase [Xenorhabdus bovienii
SS-2004]
Length = 136
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
++P+II +A L E + + LN + + RAE++ + D
Sbjct: 1 MKKPKIIINELDAERLDLLLEQPAFANTHIAEALN--------SELDRAEIVPPVEIPPD 52
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
+ + + ++ S +++ +V + +S+ +P+ AL+G + D I+ P
Sbjct: 53 VVTMNSEIRFIDLGSNEERVRTLVYPASLQDSTKHLSVMAPLGAALLGLRVNDEITWQLP 112
Query: 145 GGEKT-YEILQVLW 157
EKT ++L++++
Sbjct: 113 NSEKTRIKVLEIIY 126
>gi|240170744|ref|ZP_04749403.1| transcription elongation factor GreA [Mycobacterium kansasii ATCC
12478]
Length = 159
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 60/147 (40%), Gaps = 16/147 (10%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN--AEYQAAKELQNLN 59
++I +T + ++ EL + + A+ + D N A Y A K
Sbjct: 4 TERIRMTQQDHSRLLSELIALRSQ------HAVEAPDDFLDYHANVIARYCARK------ 51
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R+ E+E +++ A ++ + T G V++ + +G + + + + +
Sbjct: 52 -ARIREIEQLLSSA-IVGVDTGGDVIAQPGMVVTISYEATGQTETFLLGRRGAQNADIPV 109
Query: 120 VSISSPIARALIGKELGDIISVNAPGG 146
S SP+ RA+ G LG+ + P G
Sbjct: 110 YSTLSPLGRAITGARLGEQRVYSIPQG 136
>gi|121998926|ref|YP_001003713.1| GreA/GreB family elongation factor [Halorhodospira halophila SL1]
gi|121590331|gb|ABM62911.1| GreA/GreB family elongation factor [Halorhodospira halophila SL1]
Length = 137
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LEN + RAE+++ + + + +TV + + ++ + +V ++ D G +SI +
Sbjct: 34 DLENELARAEIVEPNEVPPGVVTMNSTVRFRVEATEEEFSLTLVYPKDVDSSGGTLSIFA 93
Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
P+ AL+G G+ I P GG I ++L+
Sbjct: 94 PVGSALLGLSQGEEIEWPRPGGGAHRVRIEEILY 127
>gi|325982230|ref|YP_004294632.1| GreA/GreB family elongation factor [Nitrosomonas sp. AL212]
gi|325531749|gb|ADZ26470.1| GreA/GreB family elongation factor [Nitrosomonas sp. AL212]
Length = 136
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ I RA V++ + + D I +T+ V+ +G + +V EA G +SI++P+
Sbjct: 37 DEIDRASVVEPTEVPSDVITMNSTIRFVDDMNGSEHQLTLVYPDEAGAH-GTISIAAPVG 95
Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQVL 156
AL+G +G I PGG E +L+V+
Sbjct: 96 SALLGLSVGQSIRWQVPGGRELNLRVLEVI 125
>gi|238793739|ref|ZP_04637361.1| Regulator of nucleoside diphosphate kinase [Yersinia intermedia
ATCC 29909]
gi|238726980|gb|EEQ18512.1| Regulator of nucleoside diphosphate kinase [Yersinia intermedia
ATCC 29909]
Length = 152
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 9/142 (6%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
E+ +P I +A L + Q LNE + RAE++
Sbjct: 9 AEIELESGMTKPTITINELDAERLDALLAQPAFAGTVVAQALNE--------ELDRAEIL 60
Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136
+ + D + + V + NS ++ +V + +S+ +P+ AL+G +
Sbjct: 61 PPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGMHIN 120
Query: 137 DIISVNAPGGEKT-YEILQVLW 157
D IS PGG++T ++++L+
Sbjct: 121 DEISWKLPGGDETRITVVELLY 142
>gi|269968902|ref|ZP_06182875.1| nucleoside diphosphate kinase regulator [Vibrio alginolyticus 40B]
gi|269826489|gb|EEZ80850.1| nucleoside diphosphate kinase regulator [Vibrio alginolyticus 40B]
Length = 135
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
A + + ELE + RA V++ M + + +TV +V
Sbjct: 19 ALLDKMPNIAAELVELEAELDRATVLEPEQMPDNVVTMNSTVEFKFSGEDRTMTKTLVYP 78
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
E +SI +P+ ALIG +G + P KT EI+ + +
Sbjct: 79 SELKSSDD-ISIFAPVGSALIGLSVGQKLDWPMPNNQVKTIEIVDITY 125
>gi|118619988|ref|YP_908320.1| nucleoside diphosphate kinase regulator [Mycobacterium ulcerans
Agy99]
gi|118572098|gb|ABL06849.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length = 161
Score = 67.9 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 10/162 (6%)
Query: 1 MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M +++ + D + EL +Q I+ ++ GD + AE +
Sbjct: 1 MSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELP 60
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEAD 114
+ R+ EL+ + S +G T + + G+ IV +
Sbjct: 61 VLTERIHELDRRLKAG----PSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVG 116
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ ++ SP+ +AL G++ GD ++ + P G E+L +
Sbjct: 117 HEYETLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIK 158
>gi|190572883|ref|YP_001970728.1| putative regulator of nucleoside diphosphate kinase
[Stenotrophomonas maltophilia K279a]
gi|190010805|emb|CAQ44414.1| putative regulator of nucleoside diphosphate kinase
[Stenotrophomonas maltophilia K279a]
Length = 134
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ RA V+ + + + V ++ SG+K +V +EA+V G VS+ +P+
Sbjct: 41 EELNRATVLAPDQIPEGIVMMHSRVECEDEVSGEKHVLTLVFPREANVDEGKVSVLAPVG 100
Query: 128 RALIGKELGDIISVNAPGGEK 148
AL+G +G I NAPGG K
Sbjct: 101 SALLGLSIGQSIDWNAPGGRK 121
>gi|192292723|ref|YP_001993328.1| transcription elongation factor regulatory protein
[Rhodopseudomonas palustris TIE-1]
gi|192286472|gb|ACF02853.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
TIE-1]
Length = 160
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ A+V+ S D IAFG+TV+ + G + Y+IVG+ EAD +G +
Sbjct: 71 RDARYYAARVRSAQVM-PDPPSTDEIAFGSTVTFRRAD-GRVQTYRIVGEDEADPNAGTI 128
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S +P+AR L+GK +GD++ G + E++ V
Sbjct: 129 SFVAPVARLLMGKSVGDVV----GKGAQELEVVGVK 160
>gi|194364464|ref|YP_002027074.1| GreA/GreB family elongation factor [Stenotrophomonas maltophilia
R551-3]
gi|194347268|gb|ACF50391.1| GreA/GreB family elongation factor [Stenotrophomonas maltophilia
R551-3]
Length = 134
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ RA V+ + + + V ++ SG+K +V +EA+V G VS+ +P+
Sbjct: 41 EELNRATVLAPDQIPEGIVMMHSRVECEDEVSGEKHVLTLVFPREANVDEGKVSVLAPVG 100
Query: 128 RALIGKELGDIISVNAPGGEK 148
AL+G +G I NAPGG K
Sbjct: 101 SALLGLSIGQSIDWNAPGGRK 121
>gi|197287446|ref|YP_002153318.1| nucleoside diphosphate kinase regulator [Proteus mirabilis HI4320]
gi|227358292|ref|ZP_03842633.1| regulator of nucleoside diphosphate kinase [Proteus mirabilis ATCC
29906]
gi|194684933|emb|CAR47113.1| regulator of nucleoside diphosphate kinase [Proteus mirabilis
HI4320]
gi|227161628|gb|EEI46665.1| regulator of nucleoside diphosphate kinase [Proteus mirabilis ATCC
29906]
Length = 136
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P II +A L E + + + LNE + RA+++ + + + +
Sbjct: 4 PTIIINELDAERLDSLLEQPAFADSPIAEALNE--------ELDRADIVTPADIPANIVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG- 146
+ V ++ + +++ +V + +S+ +P+ AL+G + D IS P G
Sbjct: 56 MNSKVRFMDLKNNEERIRTLVYPASLKDSATELSVMAPMGAALLGLAINDEISWQLPNGL 115
Query: 147 EKTYEILQVLW 157
E ++L++L+
Sbjct: 116 ETKVKVLEILY 126
>gi|294995299|ref|ZP_06800990.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
210]
gi|326905627|gb|EGE52560.1| hypothetical protein TBPG_03585 [Mycobacterium tuberculosis W-148]
Length = 161
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 10/162 (6%)
Query: 1 MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M +K+ + D + EL +Q ++ ++ GD + AE +
Sbjct: 1 MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEAD 114
L R+ EL+ + + SG G T + G+ +V +
Sbjct: 61 LLGDRINELDRRLRTG----PTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVG 116
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
++ ++ SP+ +AL G + GD ++ + P G ++L V
Sbjct: 117 REAETLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158
>gi|27367044|ref|NP_762571.1| nucleoside diphosphate kinase regulator [Vibrio vulnificus CMCP6]
gi|320158922|ref|YP_004191300.1| regulator of nucleoside diphosphate kinase [Vibrio vulnificus
MO6-24/O]
gi|27358612|gb|AAO07561.1| Regulator of nucleoside diphosphate kinase [Vibrio vulnificus
CMCP6]
gi|319934234|gb|ADV89097.1| regulator of nucleoside diphosphate kinase [Vibrio vulnificus
MO6-24/O]
Length = 135
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
A E + +LEN + RA V+ M + + +TV S +V
Sbjct: 19 ALLEKMANLSPELEKLENELDRANVLAPQQMPDNIVTMNSTVRFTFVGSDKVMEKTLVYP 78
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ VSI +P+ AL+G +G ++ PGG EKT EIL+V +
Sbjct: 79 DQVRNPDD-VSIFAPVGSALLGLSVGQQLTWPMPGGAEKTIEILEVTY 125
>gi|241764171|ref|ZP_04762206.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN]
gi|241366508|gb|EER61008.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN]
Length = 303
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE+ I RA V+D ++ D + + L + +V +EAD ++G +S+
Sbjct: 201 IFELEHEIERAIVVDPRQVAEDVVTMNSKALLQ--VDDAELEVALVYPEEADDRAGKLSV 258
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S I A++G + GD S P I +VL+
Sbjct: 259 CSDIGTAILGYKEGDAFSWRIPNRTCHIRIAKVLY 293
>gi|253997382|ref|YP_003049446.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8]
gi|253984061|gb|ACT48919.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8]
Length = 125
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ ++RA V+ + D + + V ++++SG + ++V + AD++ G +S+ SP+
Sbjct: 28 DELSRAIVVPADQVPADVVRINSRVIYLDESSGLSREVELVFPEGADLKFGKISVLSPVG 87
Query: 128 RALIGKELGDIISVNAPGGE-KTYEILQV 155
AL+G + G +I P G+ + +++ V
Sbjct: 88 SALLGLKEGQVIDWPFPHGQSRRLKVVSV 116
>gi|115377129|ref|ZP_01464343.1| regulator of nucleoside diphosphate kinase [Stigmatella aurantiaca
DW4/3-1]
gi|115365838|gb|EAU64859.1| regulator of nucleoside diphosphate kinase [Stigmatella aurantiaca
DW4/3-1]
Length = 149
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LE + RA V+ + D + + V + ++G ++ +V +EA++ VSI +
Sbjct: 46 QLELELDRARVVRQEQIPPDIVTMRSRVLFEDLDTGRRREASLVYPEEANIDQSRVSILA 105
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
P+ A++G ++GDII P IL+VL+
Sbjct: 106 PVGLAVLGLQVGDIIEWPLPNERLGKLRILEVLY 139
>gi|166011342|ref|ZP_02232240.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Antiqua str. E1979001]
gi|167420627|ref|ZP_02312380.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|165989726|gb|EDR42027.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166961433|gb|EDR57454.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. MG05-1020]
Length = 150
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
E+ +P I +A L + + LNE + RAE++
Sbjct: 7 AEIELESAMTKPTITINELDAERLDALLAQPAFAGSVVATALNE--------ELDRAEIL 58
Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136
+ + D + + V ++ NS ++ +V + +S+ +P+ AL+G +
Sbjct: 59 PPNEIPADVVTMNSRVRFLDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGLHVN 118
Query: 137 DIISVNAPGGEKT-YEILQVLW 157
D IS PGG++T +L++L+
Sbjct: 119 DEISWKLPGGDETRITVLELLY 140
>gi|56476179|ref|YP_157768.1| transcription elongation factor [Aromatoleum aromaticum EbN1]
gi|56312222|emb|CAI06867.1| Transcription elongation factor [Aromatoleum aromaticum EbN1]
Length = 158
Score = 67.2 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+L + RA V+ + + + V +++ SG+++ Q+V +EADV +G VS+ +
Sbjct: 57 QLRAELERAVVVPPDFLPRHVVTMHSRVRYLDEASGEQREIQVVYPEEADVAAGKVSVFA 116
Query: 125 PIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
P+ AL+G + +I + P G + + +VL
Sbjct: 117 PVGAALLGLSVDQVIEWDFPRGPRRRLRVEEVLH 150
>gi|119387447|ref|YP_918481.1| nucleoside diphosphate kinase regulator [Paracoccus denitrificans
PD1222]
gi|119378022|gb|ABL72785.1| GreA/GreB family elongation factor [Paracoccus denitrificans
PD1222]
Length = 137
Score = 67.2 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP + A L+E AA R+ + RA V+ + M D
Sbjct: 6 RPPVTIASDTLDRLERLAE-----AAMARNPELADRLL---AELARARVLPPARMPADVA 57
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
G+ V+ ++ +G ++ +V ++AD+ + S+ +PI ALIG G + + G
Sbjct: 58 GIGSAVTFRDETTGREQTVVLVWPEDADIAAARASVLTPIGVALIGLRAGARFTWDTRAG 117
Query: 147 E-KTYEILQV 155
E + +L V
Sbjct: 118 ETRELTVLSV 127
>gi|254521305|ref|ZP_05133360.1| regulator of nucleoside diphosphate kinase [Stenotrophomonas sp.
SKA14]
gi|219718896|gb|EED37421.1| regulator of nucleoside diphosphate kinase [Stenotrophomonas sp.
SKA14]
Length = 134
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 42/81 (51%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ RA V+ + + + V ++ SG+K +V +EA+V G VS+ +P+
Sbjct: 41 EELNRATVLAPDQIPEGIVMMHSRVECEDEVSGEKHVLTLVFPREANVDEGKVSVLAPVG 100
Query: 128 RALIGKELGDIISVNAPGGEK 148
AL+G +G I NAPGG K
Sbjct: 101 SALLGLAIGQSIDWNAPGGRK 121
>gi|56459738|ref|YP_155019.1| transcription elongation factor family protein [Idiomarina
loihiensis L2TR]
gi|56178748|gb|AAV81470.1| Transcription elongation factor family protein [Idiomarina
loihiensis L2TR]
Length = 129
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 5/111 (4%)
Query: 50 QAAKELQNLNEGRM-----AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104
A +L+E R+ ELE + RA++++ + M + V+ +G
Sbjct: 17 DMAVIEHHLDETRLPREFLDELEVELARAKIVEPNVMPANVACLNRQVTFKVLETGKVFT 76
Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ + D +S+ +P+ ALIG +G I G ++ EI+ V
Sbjct: 77 KTLTAPDQVDKYDDSLSVFAPLGAALIGLSVGQSIQWKTNRGLQSVEIVHV 127
>gi|240140105|ref|YP_002964582.1| putative transcription elongation factor (GreA/GreB domain protein)
[Methylobacterium extorquens AM1]
gi|240010079|gb|ACS41305.1| Putative transcription elongation factor (GreA/GreB domain protein)
[Methylobacterium extorquens AM1]
Length = 107
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L + + R +++ D G+ V + ++G ++ +V EAD++ G +SI
Sbjct: 9 AFLSDELDRVQIVRGGAAQRDFARMGSRVDFRDNSTGRTQSVTLVYPGEADIEQGKISIL 68
Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+PI ALIG G I GE + +L+V
Sbjct: 69 TPIGAALIGLSEGQSIDWATRTGETRRLTVLEVR 102
>gi|37676834|ref|NP_937230.1| nucleoside diphosphate kinase regulator [Vibrio vulnificus YJ016]
gi|37201378|dbj|BAC97200.1| transcription elongation factor [Vibrio vulnificus YJ016]
Length = 135
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
A E + +LEN + RA V+ M + + +TV S +V
Sbjct: 19 ALLEKMANLSPELEKLENELDRANVLAPQQMPDNIVTMNSTVRFTFVGSDKVMEKTLVYP 78
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ VSI +P+ AL+G +G ++ PGG E+T EIL+V +
Sbjct: 79 DQVRNPDD-VSIFAPVGSALLGLSVGQQLTWPMPGGAERTIEILEVTY 125
>gi|39936890|ref|NP_949166.1| transcription elongation factor regulatory protein
[Rhodopseudomonas palustris CGA009]
gi|39650747|emb|CAE29270.1| putative transcription elongation factor greA homologue
[Rhodopseudomonas palustris CGA009]
Length = 176
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 24/151 (15%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRI-IKAISEAR-AYGDLSENAEYQAAKELQNLNEGRMA 64
VT+ G ++ L + I+ ++E R A +A Y AA+
Sbjct: 47 VTAAGLAALEGLLAEAKAALEAAGAIEDVNERRRAEAIPLRDARYYAARVRSAQVM---- 102
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
S D IAFG+TV+ + G + Y+IVG+ EAD +G +S +
Sbjct: 103 -------------PDPPSIDEIAFGSTVTFRRAD-GRVQTYRIVGEDEADPNAGTISFVA 148
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
P+AR L+GK +GD++ G + E++ +
Sbjct: 149 PVARLLMGKSVGDVV----GKGAQELEVVGI 175
>gi|15610924|ref|NP_218305.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
H37Rv]
gi|15843410|ref|NP_338447.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
CDC1551]
gi|31794961|ref|NP_857454.1| nucleoside diphosphate kinase regulator [Mycobacterium bovis
AF2122/97]
gi|121639705|ref|YP_979929.1| nucleoside diphosphate kinase regulator [Mycobacterium bovis BCG
str. Pasteur 1173P2]
gi|148663656|ref|YP_001285179.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
H37Ra]
gi|148824995|ref|YP_001289749.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
F11]
gi|167970951|ref|ZP_02553228.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
H37Ra]
gi|215405842|ref|ZP_03418023.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
02_1987]
gi|215425039|ref|ZP_03422958.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
T92]
gi|215432769|ref|ZP_03430688.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
EAS054]
gi|218755573|ref|ZP_03534369.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
GM 1503]
gi|219559875|ref|ZP_03538951.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
T17]
gi|224992200|ref|YP_002646890.1| nucleotide diphosphate kinase regulator [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253800836|ref|YP_003033838.1| hypothetical protein TBMG_03835 [Mycobacterium tuberculosis KZN
1435]
gi|254233281|ref|ZP_04926607.1| hypothetical protein TBCG_03714 [Mycobacterium tuberculosis C]
gi|254366335|ref|ZP_04982379.1| hypothetical protein TBHG_03726 [Mycobacterium tuberculosis str.
Haarlem]
gi|254552903|ref|ZP_05143350.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260184713|ref|ZP_05762187.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
CPHL_A]
gi|260198837|ref|ZP_05766328.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
T46]
gi|260202993|ref|ZP_05770484.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
K85]
gi|289441225|ref|ZP_06430969.1| hypothetical protein TBLG_01968 [Mycobacterium tuberculosis T46]
gi|289445389|ref|ZP_06435133.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
CPHL_A]
gi|289556055|ref|ZP_06445265.1| hypothetical protein TBXG_03805 [Mycobacterium tuberculosis KZN
605]
gi|289572037|ref|ZP_06452264.1| hypothetical protein TBJG_02925 [Mycobacterium tuberculosis T17]
gi|289572440|ref|ZP_06452667.1| hypothetical protein TBOG_00284 [Mycobacterium tuberculosis K85]
gi|289747630|ref|ZP_06507008.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
02_1987]
gi|289748311|ref|ZP_06507689.1| hypothetical protein TBDG_00199 [Mycobacterium tuberculosis T92]
gi|289755921|ref|ZP_06515299.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
EAS054]
gi|289763972|ref|ZP_06523350.1| transcription elongation factor [Mycobacterium tuberculosis GM
1503]
gi|297636470|ref|ZP_06954250.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
KZN 4207]
gi|297733464|ref|ZP_06962582.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
KZN R506]
gi|306778150|ref|ZP_07416487.1| hypothetical protein TMAG_00280 [Mycobacterium tuberculosis
SUMu001]
gi|306778682|ref|ZP_07417019.1| hypothetical protein TMBG_02328 [Mycobacterium tuberculosis
SUMu002]
gi|306786704|ref|ZP_07425026.1| hypothetical protein TMCG_01294 [Mycobacterium tuberculosis
SUMu003]
gi|306791071|ref|ZP_07429393.1| hypothetical protein TMDG_01526 [Mycobacterium tuberculosis
SUMu004]
gi|306791390|ref|ZP_07429692.1| hypothetical protein TMEG_00285 [Mycobacterium tuberculosis
SUMu005]
gi|306795455|ref|ZP_07433757.1| hypothetical protein TMFG_02022 [Mycobacterium tuberculosis
SUMu006]
gi|306801430|ref|ZP_07438098.1| hypothetical protein TMHG_02857 [Mycobacterium tuberculosis
SUMu008]
gi|306805636|ref|ZP_07442304.1| hypothetical protein TMGG_01333 [Mycobacterium tuberculosis
SUMu007]
gi|306970032|ref|ZP_07482693.1| hypothetical protein TMIG_00141 [Mycobacterium tuberculosis
SUMu009]
gi|306974266|ref|ZP_07486927.1| hypothetical protein TMJG_01042 [Mycobacterium tuberculosis
SUMu010]
gi|307081974|ref|ZP_07491144.1| hypothetical protein TMKG_01033 [Mycobacterium tuberculosis
SUMu011]
gi|307086588|ref|ZP_07495701.1| hypothetical protein TMLG_00280 [Mycobacterium tuberculosis
SUMu012]
gi|313660795|ref|ZP_07817675.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
KZN V2475]
gi|54039913|sp|P65096|Y3817_MYCBO RecName: Full=Uncharacterized protein Mb3817
gi|54042581|sp|P65095|Y3788_MYCTU RecName: Full=Uncharacterized protein Rv3788/MT3896
gi|1552871|emb|CAB02467.1| HYPOTHETICAL PROTEIN Rv3788 [Mycobacterium tuberculosis H37Rv]
gi|13883777|gb|AAK48261.1| transcription elongation factor, putative [Mycobacterium
tuberculosis CDC1551]
gi|31620559|emb|CAD96003.1| HYPOTHETICAL PROTEIN Mb3817 [Mycobacterium bovis AF2122/97]
gi|121495353|emb|CAL73840.1| Hypothetical protein BCG_3850 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|124603074|gb|EAY61349.1| hypothetical protein TBCG_03714 [Mycobacterium tuberculosis C]
gi|134151847|gb|EBA43892.1| hypothetical protein TBHG_03726 [Mycobacterium tuberculosis str.
Haarlem]
gi|148507808|gb|ABQ75617.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
H37Ra]
gi|148723522|gb|ABR08147.1| hypothetical protein TBFG_13822 [Mycobacterium tuberculosis F11]
gi|224775316|dbj|BAH28122.1| nucleotide diphosphate kinase regulator [Mycobacterium bovis BCG
str. Tokyo 172]
gi|253322340|gb|ACT26943.1| hypothetical protein TBMG_03835 [Mycobacterium tuberculosis KZN
1435]
gi|289414144|gb|EFD11384.1| hypothetical protein TBLG_01968 [Mycobacterium tuberculosis T46]
gi|289418347|gb|EFD15548.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
CPHL_A]
gi|289440687|gb|EFD23180.1| hypothetical protein TBXG_03805 [Mycobacterium tuberculosis KZN
605]
gi|289536871|gb|EFD41449.1| hypothetical protein TBOG_00284 [Mycobacterium tuberculosis K85]
gi|289545791|gb|EFD49439.1| hypothetical protein TBJG_02925 [Mycobacterium tuberculosis T17]
gi|289688158|gb|EFD55646.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
02_1987]
gi|289688898|gb|EFD56327.1| hypothetical protein TBDG_00199 [Mycobacterium tuberculosis T92]
gi|289696508|gb|EFD63937.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
EAS054]
gi|289711478|gb|EFD75494.1| transcription elongation factor [Mycobacterium tuberculosis GM
1503]
gi|308213671|gb|EFO73070.1| hypothetical protein TMAG_00280 [Mycobacterium tuberculosis
SUMu001]
gi|308328404|gb|EFP17255.1| hypothetical protein TMBG_02328 [Mycobacterium tuberculosis
SUMu002]
gi|308328808|gb|EFP17659.1| hypothetical protein TMCG_01294 [Mycobacterium tuberculosis
SUMu003]
gi|308332651|gb|EFP21502.1| hypothetical protein TMDG_01526 [Mycobacterium tuberculosis
SUMu004]
gi|308340143|gb|EFP28994.1| hypothetical protein TMEG_00285 [Mycobacterium tuberculosis
SUMu005]
gi|308344129|gb|EFP32980.1| hypothetical protein TMFG_02022 [Mycobacterium tuberculosis
SUMu006]
gi|308347931|gb|EFP36782.1| hypothetical protein TMGG_01333 [Mycobacterium tuberculosis
SUMu007]
gi|308351799|gb|EFP40650.1| hypothetical protein TMHG_02857 [Mycobacterium tuberculosis
SUMu008]
gi|308352582|gb|EFP41433.1| hypothetical protein TMIG_00141 [Mycobacterium tuberculosis
SUMu009]
gi|308356534|gb|EFP45385.1| hypothetical protein TMJG_01042 [Mycobacterium tuberculosis
SUMu010]
gi|308360482|gb|EFP49333.1| hypothetical protein TMKG_01033 [Mycobacterium tuberculosis
SUMu011]
gi|308364000|gb|EFP52851.1| hypothetical protein TMLG_00280 [Mycobacterium tuberculosis
SUMu012]
gi|323717654|gb|EGB26856.1| hypothetical protein TMMG_00281 [Mycobacterium tuberculosis
CDC1551A]
gi|328460564|gb|AEB05987.1| hypothetical protein TBSG_03858 [Mycobacterium tuberculosis KZN
4207]
Length = 161
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 10/162 (6%)
Query: 1 MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M +K+ + D + EL +Q ++ ++ GD + AE +
Sbjct: 1 MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEAD 114
+ R+ EL+ + + SG G T + G+ +V +
Sbjct: 61 ILGDRINELDRRLRTG----PTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVG 116
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
++ ++ SP+ +AL G + GD ++ + P G ++L V
Sbjct: 117 REAETLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158
>gi|254000392|ref|YP_003052455.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4]
gi|313202349|ref|YP_004041007.1| grea/greb family elongation factor [Methylovorus sp. MP688]
gi|253987071|gb|ACT51928.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4]
gi|312441665|gb|ADQ85771.1| GreA/GreB family elongation factor [Methylovorus sp. MP688]
Length = 118
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 44/79 (55%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ M D + + V+ V++++G + ++V +EA+++ G +S+ +P+
Sbjct: 27 DELDRAIVVPSEKMPPDIVGLNSRVTYVDESNGVSRTIELVLPEEANMEQGKISVLAPVG 86
Query: 128 RALIGKELGDIISVNAPGG 146
AL+G + G I P G
Sbjct: 87 TALLGLKAGQSIEWPFPNG 105
>gi|148550773|ref|YP_001260212.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
gi|148503192|gb|ABQ71445.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
Length = 137
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 9/135 (6%)
Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
+ RP I SEA DL+ +A + + Q L E + RA + +
Sbjct: 5 KAARRPPIHMIDSEADILADLATSAATRLPQVSQLLLE--------ELGRATIHKADRIP 56
Query: 83 GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
GD + + V + SG + YQ+V ++AD+ G +SI +P+ LIG G I
Sbjct: 57 GDIVTMHSVVQFTDAASGKEHRYQLVYPKDADIAEGRISILTPVGAGLIGLRAGQSILWP 116
Query: 143 APGG-EKTYEILQVL 156
G E+ I +V
Sbjct: 117 DRDGHERLLTIAKVS 131
>gi|254562534|ref|YP_003069629.1| elongation factor, GreA/GreB family [Methylobacterium extorquens
DM4]
gi|254269812|emb|CAX25787.1| Putative elongation factor, GreA/GreB family [Methylobacterium
extorquens DM4]
Length = 107
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
A L + + R +++ D G+ V + ++G ++ +V EAD++ G VSI
Sbjct: 9 AFLSDELDRVQIVRGGAAQRDFARMGSRVDFRDNSTGRTQSVTLVYPGEADIEQGKVSIL 68
Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+PI ALIG G I+ GE + +L+V
Sbjct: 69 TPIGAALIGLSEGQSINWATRTGETRRLTVLEVR 102
>gi|238789786|ref|ZP_04633568.1| Regulator of nucleoside diphosphate kinase [Yersinia frederiksenii
ATCC 33641]
gi|238722145|gb|EEQ13803.1| Regulator of nucleoside diphosphate kinase [Yersinia frederiksenii
ATCC 33641]
Length = 152
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 58/142 (40%), Gaps = 9/142 (6%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
E+ +P I +A L + + LNE + RAE++
Sbjct: 9 AEIELESGMTKPTITINELDAERLDALLAQPAFAGSVVATALNE--------ELDRAEIL 60
Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136
+ + D + + V + NS ++ +V + +S+ +P+ AL+G +
Sbjct: 61 PPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGLHVN 120
Query: 137 DIISVNAPGGEK-TYEILQVLW 157
D IS PGG++ +L++L+
Sbjct: 121 DEISWKLPGGDEARITVLELLY 142
>gi|331089361|ref|ZP_08338261.1| hypothetical protein HMPREF1025_01844 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330405424|gb|EGG84959.1| hypothetical protein HMPREF1025_01844 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 101
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 38/80 (47%)
Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134
VI D I TV + ++ + + Y+IV +GLVSI SP+ +AL+G +
Sbjct: 6 VIVEDESKEDEIGLNNTVEVYCEDDEEVETYRIVTSVRGSSLNGLVSIESPLGKALLGHK 65
Query: 135 LGDIISVNAPGGEKTYEILQ 154
GD + + Y I++
Sbjct: 66 EGDRVFIKVNDDFGYYVIVK 85
>gi|94499055|ref|ZP_01305593.1| putative regulator of nucleoside diphosphate kinase [Oceanobacter
sp. RED65]
gi|94428687|gb|EAT13659.1| putative regulator of nucleoside diphosphate kinase [Oceanobacter
sp. RED65]
Length = 135
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+ELE+ + RA +++ + + + ++ + V ++ + +V ++ D + +SI
Sbjct: 31 SELEDELDRANLVEPTEIPPNIVSMNSKVKFEVVSTNQEFELTLVYPKDLDQEGKTISIL 90
Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+P+ AL+G +GD I ++P GG I +++
Sbjct: 91 APVGSALLGLSIGDSIEWSSPGGGILEVIIKDIVY 125
>gi|310822870|ref|YP_003955228.1| transcription elongation factor [Stigmatella aurantiaca DW4/3-1]
gi|309395942|gb|ADO73401.1| Transcription elongation factor [Stigmatella aurantiaca DW4/3-1]
Length = 144
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LE + RA V+ + D + + V + ++G ++ +V +EA++ VSI +
Sbjct: 41 QLELELDRARVVRQEQIPPDIVTMRSRVLFEDLDTGRRREASLVYPEEANIDQSRVSILA 100
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
P+ A++G ++GDII P IL+VL+
Sbjct: 101 PVGLAVLGLQVGDIIEWPLPNERLGKLRILEVLY 134
>gi|163852771|ref|YP_001640814.1| transcription elongation factor GreA/GreB domain-containing protein
[Methylobacterium extorquens PA1]
gi|163664376|gb|ABY31743.1| transcription elongation factor GreA/GreB domain protein
[Methylobacterium extorquens PA1]
Length = 123
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+ L + + R +++ D G+ V + ++G ++ +V EAD++ G +SI
Sbjct: 25 SFLSDELDRVQIVRGGAAQRDFARMGSRVDFRDNSTGRTQSVTLVYPGEADIEQGRISIL 84
Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+PI ALIG G I GE + +L+V
Sbjct: 85 TPIGAALIGLSEGQSIDWATRTGETRRLTVLEVR 118
>gi|49076904|gb|AAT49613.1| PA5274 [synthetic construct]
Length = 135
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE ++RA+V+ + + +TV E++SG + +V ++ G VSI +P
Sbjct: 33 LEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSGKEYTLTLVYPEDV-AGEGKVSILAP 91
Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+ AL+G +G I AP G+ +L++ +
Sbjct: 92 VGTALLGLTIGQTIDWPAPSGKTLKLTLLEIEY 124
>gi|296166914|ref|ZP_06849331.1| nucleoside diphosphate kinase regulator [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295897791|gb|EFG77380.1| nucleoside diphosphate kinase regulator [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 159
Score = 66.8 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 54/142 (38%), Gaps = 7/142 (4%)
Query: 18 ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVID 77
EL +Q ++ ++ GD + AE E R+ EL+ +
Sbjct: 19 ELERLRQRRDRLEVEVRNDRGMVGDHGDAAEAIQRAEELVGLSDRINELDRRLRTG---- 74
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEADVQSGLVSISSPIARALIGKE 134
S G T + + G+ IV + + ++ SP+A+AL G +
Sbjct: 75 PSQPDASETLPGGTEVTLRFSDGEVVTMHVISIVEETPVGREGETLTARSPLAQALAGHK 134
Query: 135 LGDIISVNAPGGEKTYEILQVL 156
GD ++ + P GE E++ V
Sbjct: 135 AGDTVTYSTPQGEDQVELIAVK 156
>gi|260430269|ref|ZP_05784243.1| GreA/GreB family elongation factor [Citreicella sp. SE45]
gi|260418741|gb|EEX11997.1| GreA/GreB family elongation factor [Citreicella sp. SE45]
Length = 147
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
RPR++ A + G L AE A E R+ I RA ++ + + +
Sbjct: 13 RRPRVVI---SADSLGRLEALAE--GAIERNPDLADRLL---GEIGRARIVPAAKLPQNV 64
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+A G V+ ++++G +K V ++AD+ G +SI +PI ALIG G + +
Sbjct: 65 VAIGRAVTYRDESNGQEKTVTPVFPEDADIARGRISILTPIGVALIGLAEGASLHWDTRD 124
Query: 146 GEKTY-EILQV 155
GE+ +L V
Sbjct: 125 GERRVLTVLHV 135
>gi|325104691|ref|YP_004274345.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145]
gi|324973539|gb|ADY52523.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145]
Length = 135
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 45/87 (51%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ +AEV+ T+ ++ + + E+ SG + + +V ++A + +SI SPI A
Sbjct: 45 LEKAEVLTEKTLPEGFVSVNTKLKIEEEQSGKELEFILVEPKKAKQKLNKLSILSPIGVA 104
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156
L G + GD +S P G + Y I +V
Sbjct: 105 LAGYKSGDKVSWEMPDGIRNYFIKEVT 131
>gi|300703154|ref|YP_003744756.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
CFBP2957]
gi|299070817|emb|CBJ42114.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
CFBP2957]
Length = 134
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++++I RA V+ + D + + V + SG + + +V EAD+ + +S+ SP
Sbjct: 33 VDDLIARANVVPGDKIPADVVTMNSVVRVR-TESGVAQQWTLVYPDEADLAAARLSVCSP 91
Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+ AL+G GD + AP G +I +++
Sbjct: 92 MGAALLGGRAGDAVHYVAPDGTTHALQIDAIVF 124
>gi|152985312|ref|YP_001351332.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
PA7]
gi|150960470|gb|ABR82495.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
PA7]
Length = 134
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE ++RA+V+ + + +TV E++SG + +V ++ G VSI +P
Sbjct: 33 LEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSGKEYTLTLVYPEDV-AGEGKVSILAP 91
Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+ AL+G +G I AP G+ +L++ +
Sbjct: 92 VGTALLGLTIGQTIDWPAPSGKTLKLTLLEIEY 124
>gi|15600467|ref|NP_253961.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
PAO1]
gi|107104376|ref|ZP_01368294.1| hypothetical protein PaerPA_01005451 [Pseudomonas aeruginosa PACS2]
gi|116053423|ref|YP_793748.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218894376|ref|YP_002443246.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
LESB58]
gi|254238029|ref|ZP_04931352.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
C3719]
gi|254243839|ref|ZP_04937161.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
2192]
gi|296392131|ref|ZP_06881606.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
PAb1]
gi|313106689|ref|ZP_07792907.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
39016]
gi|9951587|gb|AAG08659.1|AE004940_3 nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
PAO1]
gi|115588644|gb|ABJ14659.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126169960|gb|EAZ55471.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
C3719]
gi|126197217|gb|EAZ61280.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
2192]
gi|218774605|emb|CAW30422.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
LESB58]
gi|310879409|gb|EFQ38003.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
39016]
Length = 134
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE ++RA+V+ + + +TV E++SG + +V ++ G VSI +P
Sbjct: 33 LEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSGKEYTLTLVYPEDV-AGEGKVSILAP 91
Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+ AL+G +G I AP G+ +L++ +
Sbjct: 92 VGTALLGLTIGQTIDWPAPSGKTLKLTLLEIEY 124
>gi|50119243|ref|YP_048410.1| nucleoside diphosphate kinase regulator [Pectobacterium
atrosepticum SCRI1043]
gi|49609769|emb|CAG73203.1| putative regulator of nucleoside diphosphate kinase [Pectobacterium
atrosepticum SCRI1043]
Length = 136
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P + + +A L E + + Q LN+ + RAE++ +++ +
Sbjct: 4 PNLTISELDAERLDKLLEQPAFADSDIAQALND--------ELDRAEILPSASIPSHVVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ V + N+ ++ +V +S+ +P+ AL+G +G I+ P GE
Sbjct: 56 MNSRVRFRDLNTNEEHIRTLVYPAAVKDSKEPLSVMAPLGAALLGMHVGSAITWQLPNGE 115
Query: 148 KT-YEILQVLW 157
+T E+L++L+
Sbjct: 116 ETRIEVLELLY 126
>gi|239983774|ref|ZP_04706298.1| nucleoside diphosphate kinase regulator [Streptomyces albus J1074]
gi|291455579|ref|ZP_06594969.1| nucleoside diphosphate kinase regulator [Streptomyces albus J1074]
gi|291358528|gb|EFE85430.1| nucleoside diphosphate kinase regulator [Streptomyces albus J1074]
Length = 160
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 56/146 (38%), Gaps = 4/146 (2%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
D +P+++ ++QEL + E GD + A+ +
Sbjct: 3 SDPLPISAAARHALEQELADVRAERETVAATLQDPDIVAGDRGDAADQLQRSGDLARLDA 62
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
R+ ++ + +A D + + + V + G ++ I G+ + LV+
Sbjct: 63 RIEDITTRLRQA---DDAGPPPAGVVGVGSTVTVRFDDGAEQTVSI-GEVTQGYDASLVT 118
Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147
SP+ +AL+G GD + P GE
Sbjct: 119 ADSPLGKALMGCRPGDAVRYRTPDGE 144
>gi|238754630|ref|ZP_04615983.1| Regulator of nucleoside diphosphate kinase [Yersinia ruckeri ATCC
29473]
gi|238707089|gb|EEP99453.1| Regulator of nucleoside diphosphate kinase [Yersinia ruckeri ATCC
29473]
Length = 136
Score = 66.8 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ RA+++ S + D + + V + NS ++ +V S +S+ +P+
Sbjct: 36 EELDRADILPPSEIPADVVTMNSRVRFRDLNSEEEHIRTLVYPASLKDSSEQISVMAPLG 95
Query: 128 RALIGKELGDIISVNAPGGEK-TYEILQVLW 157
AL+G + D I+ PGG++ +L++L+
Sbjct: 96 AALLGLHVNDEINWTLPGGDEARITVLELLY 126
>gi|215413716|ref|ZP_03422384.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
94_M4241A]
gi|298527263|ref|ZP_07014672.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
94_M4241A]
gi|298497057|gb|EFI32351.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
94_M4241A]
Length = 161
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 10/162 (6%)
Query: 1 MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M +K+ + D + EL +Q ++ ++ GD + AE +
Sbjct: 1 MSEKVESKELADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEAD 114
+ R+ EL+ + + SG G T + G+ +V +
Sbjct: 61 ILGDRINELDRRLRTG----PTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVG 116
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
++ ++ SP+ +AL G + GD ++ + P G ++L V
Sbjct: 117 REAETLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158
>gi|293394200|ref|ZP_06638500.1| transcriptional regulator (nucleoside diphosphate kinase) [Serratia
odorifera DSM 4582]
gi|291423178|gb|EFE96407.1| transcriptional regulator (nucleoside diphosphate kinase) [Serratia
odorifera DSM 4582]
Length = 221
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P I +A L E Y LN + RAE++ + + +
Sbjct: 89 PIITINELDAERLDALLEKPAYANTDVAAALNA--------ELDRAEILPPAQIPAHVVT 140
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ V + ++ ++ +V E S +S+ +P+ AL+G +G I P GE
Sbjct: 141 MNSRVRFRDLHTNEEHVRTLVYPAELQNSSEQLSVMAPLGAALLGMHVGKQIDWALPNGE 200
Query: 148 K-TYEILQVLW 157
+ E+L++L+
Sbjct: 201 QAQIEVLELLY 211
>gi|120612663|ref|YP_972341.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1]
gi|120591127|gb|ABM34567.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1]
Length = 136
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+++ A+V T+ D + + V LV+ +G ++ I ++AD+ +G VS+ SP+
Sbjct: 36 DLLENADVTSSRTVEADVVTMYSRVELVDTATGARQVLTICYPRDADLAAGFVSVLSPVG 95
Query: 128 RALIGKELGDIISVNAPGGE 147
+L+G +G P GE
Sbjct: 96 SSLLGLRVGQTARWCTPRGE 115
>gi|109896618|ref|YP_659873.1| GreA/GreB family elongation factor [Pseudoalteromonas atlantica
T6c]
gi|109698899|gb|ABG38819.1| GreA/GreB family elongation factor [Pseudoalteromonas atlantica
T6c]
Length = 128
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 50/112 (44%)
Query: 45 ENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104
+ AE + E L + + +EN + RA ++ + + +A G+ V+ +S
Sbjct: 13 DLAELEYQLERSKLPDDAIRAIENELDRATIVACKDLPENVVAIGSQVTFKILDSQKVFT 72
Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ ++ +S+ +PI ALIG G I G+++ EI++V
Sbjct: 73 KALCLPHDSVKFEDSISVFAPIGSALIGLSTGQCIKWQTQRGQQSVEIIKVE 124
>gi|319653573|ref|ZP_08007672.1| hypothetical protein HMPREF1013_04289 [Bacillus sp. 2_A_57_CT2]
gi|317394772|gb|EFV75511.1| hypothetical protein HMPREF1013_04289 [Bacillus sp. 2_A_57_CT2]
Length = 149
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
+ ++ ++E+E IT + ++ G V+++ D+++Y I +
Sbjct: 40 ERKKDFLSNYVSEVEKYITLCNQA-PAEPPLRKVLIGTKVTVLFDGEDDREDYHICLPDQ 98
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+D +G +S SP+ R L+ K +G+ S+ P G+ I ++ +
Sbjct: 99 SDPDNGCISFLSPVGRQLLLKNMGEQTSLIIPSGQLDVVIEKISY 143
>gi|159043110|ref|YP_001531904.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12]
gi|157910870|gb|ABV92303.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12]
Length = 143
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 6/120 (5%)
Query: 40 YGDLSENAE--YQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEK 97
D E+ E Q R+ + I RA ++ S M + ++ G+ V+ ++
Sbjct: 21 NADDLEHLEGLADGMMRRQPALADRLF---DEIARARIVAPSKMPKNVVSMGSRVTYRDE 77
Query: 98 NSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
+G +K+ +V +EAD+ VS+++PI AL+G G G ++ I+QV
Sbjct: 78 ATGQEKSVTLVYPEEADIARLRVSVTTPIGVALLGLAEGASFHWETRGNQRRMLTIIQVE 137
>gi|261819630|ref|YP_003257736.1| nucleoside diphosphate kinase regulator [Pectobacterium wasabiae
WPP163]
gi|261603643|gb|ACX86129.1| GreA/GreB family elongation factor [Pectobacterium wasabiae WPP163]
Length = 136
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P + + +A L E + + Q LNE + RAE++ +++ +
Sbjct: 4 PNLTISELDAERLDKLLEQPAFADSDIAQALNE--------ELDRAEILPSASIPSHVVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ V + N+ ++ +V +S+ +P+ AL+G +G+ I+ P GE
Sbjct: 56 MNSRVRFRDLNTNEEHIRTLVYPAAVKDSKEPLSVMAPLGAALLGMHVGNAITWQLPNGE 115
Query: 148 K-TYEILQVLW 157
+ E+L++L+
Sbjct: 116 EARIEVLELLY 126
>gi|315500720|ref|YP_004089521.1| GreA/GreB family elongation factor [Asticcacaulis excentricus CB
48]
gi|315418732|gb|ADU15370.1| GreA/GreB family elongation factor [Asticcacaulis excentricus CB
48]
Length = 159
Score = 66.4 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 6/96 (6%)
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
+ + A+ + + +++ FG TV + ++ G + ++IVG+ EA+ + G +
Sbjct: 70 RDLRYYTARLGSAQPV-APVANANKVVFGCTVEIA-RDDGRVQTFKIVGEDEANPKVGKI 127
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S SP+ARAL+G+E GD ++ + EIL V
Sbjct: 128 SYVSPLARALLGREAGDETQISG----ASVEILTVK 159
>gi|253686674|ref|YP_003015864.1| GreA/GreB family elongation factor [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251753252|gb|ACT11328.1| GreA/GreB family elongation factor [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 136
Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P + + +A L E + + Q LNE + RAE++ +++ +
Sbjct: 4 PNLTISELDAERLDMLLEQPAFADSDIAQALNE--------ELDRAEILPSASIPSHVVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ V + N+ ++ +V +S+ +P+ AL+G +G+ I+ P GE
Sbjct: 56 MNSRVRFRDLNTNEEHIRTLVYPAAVKDSQEPLSVMAPLGAALLGMHVGNAITWQLPNGE 115
Query: 148 KT-YEILQVLW 157
+T E+L++L+
Sbjct: 116 ETRIEVLELLY 126
>gi|258516280|ref|YP_003192502.1| GreA/GreB family elongation factor [Desulfotomaculum acetoxidans
DSM 771]
gi|257779985|gb|ACV63879.1| GreA/GreB family elongation factor [Desulfotomaculum acetoxidans
DSM 771]
Length = 135
Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ +LEN + RA ++D + D I + L + + + +V ++AD+ + +SI
Sbjct: 33 VKKLENELYRAIIVDSQQVPRDVITMNSKALLQLNDEDIEVS--LVYPEDADLGAMKLSI 90
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SPI A++G + G+ I P G I ++L+
Sbjct: 91 FSPIGTAILGYKEGNTIEWEVPSGTSKIHIKKILY 125
>gi|227114046|ref|ZP_03827702.1| nucleoside diphosphate kinase regulator [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 136
Score = 66.0 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P + + +A L E + + Q LNE + RA+++ +++ +
Sbjct: 4 PNLTISELDAERLDMLLEQPAFADSDIAQALNE--------ELDRADILPAASIPSHVVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ V + N+ ++ +V +S+ +P+ AL+G +G+ I+ P GE
Sbjct: 56 MNSRVRFRDLNTNEEHIRTLVYPAAVKDSQEPLSVMAPLGAALLGMHVGNSITWQLPNGE 115
Query: 148 KT-YEILQVLW 157
+T E+L++L+
Sbjct: 116 ETRIEVLELLY 126
>gi|28900843|ref|NP_800498.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
RIMD 2210633]
gi|260362544|ref|ZP_05775464.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
K5030]
gi|260896745|ref|ZP_05905241.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
Peru-466]
gi|28809289|dbj|BAC62331.1| regulator of nucleoside diphosphate kinase [Vibrio parahaemolyticus
RIMD 2210633]
gi|308087377|gb|EFO37072.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
Peru-466]
gi|308115247|gb|EFO52787.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
K5030]
Length = 135
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
A + + ELE + RA V++ M + + +TV +V
Sbjct: 19 ALLDKMPNIAAELVELEAELDRATVLEPEEMPSNVVTMNSTVEFKFAGEERTMTKTLVYP 78
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
E +SI +P+ ALIG +G + P KT EI+ + +
Sbjct: 79 SELKSSDD-ISIFAPVGSALIGLSVGQKLDWPMPNKQVKTIEIVDITY 125
>gi|332308302|ref|YP_004436153.1| GreA/GreB family elongation factor [Glaciecola agarilytica
4H-3-7+YE-5]
gi|332175631|gb|AEE24885.1| GreA/GreB family elongation factor [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 126
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/112 (23%), Positives = 48/112 (42%)
Query: 45 ENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104
+ AE + E L + +EN + RA ++ + + +A G+ V+ +S
Sbjct: 11 DLAELEYQLERAKLPADTVRAIENELDRASIVACKDLPENVVAIGSKVTFKILDSQKIFT 70
Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ + +S+ +PI ALIG G I+ GE++ EI+ V
Sbjct: 71 KTLCLPHDTIKYEDSISVFAPIGSALIGLSTGQCITWQTQRGEQSVEIINVE 122
>gi|153836903|ref|ZP_01989570.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
AQ3810]
gi|149749861|gb|EDM60606.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
AQ3810]
Length = 135
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
A + + ELE + RA V++ M + + +TV +V
Sbjct: 19 ALLDKMPNIAAELVELEAELDRATVLEPEEMPSNVVTMNSTVEFKFAGEERTMTKTLVYP 78
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
E +SI +P+ ALIG +G + P KT EI+ + +
Sbjct: 79 SELKSSDD-ISIFAPVGSALIGLSVGQKLDWPMPNKQVKTIEIVDITY 125
>gi|260901477|ref|ZP_05909872.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
AQ4037]
gi|308107692|gb|EFO45232.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
AQ4037]
Length = 135
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
A + + ELE + RA V++ M + + +TV +V
Sbjct: 19 ALLDKMPNIAAELVELEAELDRATVLEPEEMPSNVVTMNSTVEFKFSGEERTMTKTLVYP 78
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
E +SI +P+ ALIG +G + P KT EI+ + +
Sbjct: 79 SELKSSDD-ISIFAPVGSALIGLSVGQKLDWPMPNKQVKTIEIVDITY 125
>gi|227326625|ref|ZP_03830649.1| nucleoside diphosphate kinase regulator [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 136
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P + + +A L E + + Q LNE + RA+++ +++ +
Sbjct: 4 PNLTISELDAERLDMLLEQPAFADSDIAQALNE--------ELDRADILPSASIPSHVVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ V + N+ ++ +V +S+ +P+ AL+G +G+ I+ P GE
Sbjct: 56 MNSRVRFRDLNTNEEHIRTLVYPAAVKDSKEPLSVMAPLGAALLGMHVGNSITWQLPNGE 115
Query: 148 KT-YEILQVLW 157
+T E+L++L+
Sbjct: 116 ETRIEVLELLY 126
>gi|328470747|gb|EGF41658.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
10329]
Length = 135
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
A + + ELE + RA +++ M + + +TV +V
Sbjct: 19 ALLDKMPNIAAELVELEAELDRATILEPEEMPSNVVTMNSTVEFKFAGEERTMTKTLVYP 78
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
E +SI +P+ ALIG +G + P KT EI+ + +
Sbjct: 79 SELKSSDD-ISIFAPVGSALIGLSVGQKLDWPMPNKQVKTIEIVDITY 125
>gi|310816463|ref|YP_003964427.1| nucleoside diphosphate kinase regulator [Ketogulonicigenium vulgare
Y25]
gi|308755198|gb|ADO43127.1| nucleoside diphosphate kinase regulator [Ketogulonicigenium vulgare
Y25]
Length = 129
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 24 QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83
+ + PR++ + + L+E E + + ++ + ++RA+V+ + +
Sbjct: 3 KTKLPRVVISDATMAVLERLAEGLERRNPELAEHFVD--------ELSRAKVVKSAALPV 54
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
D + G+TV+ ++ +G + + + AD+ G +S+++PI ALIG G S A
Sbjct: 55 DTVDLGSTVTFRDETTGKSQTVTLALPENADINEGRISVATPIGVALIGLSAGAKFSWLA 114
Query: 144 PGGEKT 149
G K
Sbjct: 115 NTGTKH 120
>gi|218533326|ref|YP_002424141.1| GreA/GreB family elongation factor [Methylobacterium
chloromethanicum CM4]
gi|218525629|gb|ACK86213.1| GreA/GreB family elongation factor [Methylobacterium
chloromethanicum CM4]
Length = 137
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
++ L + + R +++ GD G+ V + ++G ++ +V EAD++ G VSI
Sbjct: 38 VSFLSDELDRVQIVRGGAAQGDFARMGSRVDFRDNSTGRMQSVTLVYPGEADIEQGKVSI 97
Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+PI ALIG G I GE + +L V
Sbjct: 98 LTPIGAALIGLSKGQSIDWATRTGETRRLTVLAVR 132
>gi|77165386|ref|YP_343911.1| transcription elongation factor [Nitrosococcus oceani ATCC 19707]
gi|254434724|ref|ZP_05048232.1| hypothetical protein NOC27_1655 [Nitrosococcus oceani AFC27]
gi|76883700|gb|ABA58381.1| transcription elongation factor [Nitrosococcus oceani ATCC 19707]
gi|207091057|gb|EDZ68328.1| hypothetical protein NOC27_1655 [Nitrosococcus oceani AFC27]
Length = 129
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ RA VI + + + + +++N+G+++ ++V +EA+ ++G +S+ +P+
Sbjct: 28 EELDRATVIPQERVPDRVVTMHSRLIYLDENTGERREVELVYPEEANTRAGKISVLAPVG 87
Query: 128 RALIGKELGDIISVNAPGGE-KTYEILQVLW 157
AL+G +G+ I P GE + + Q+L+
Sbjct: 88 SALLGLSVGESIDWKFPSGEVRRLSVEQILF 118
>gi|157372615|ref|YP_001480604.1| nucleoside diphosphate kinase regulator [Serratia proteamaculans
568]
gi|157324379|gb|ABV43476.1| GreA/GreB family elongation factor [Serratia proteamaculans 568]
Length = 136
Score = 66.0 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RAE++ S + + + + V + ++ ++ +V +S+ +P+ A
Sbjct: 38 LDRAEILPPSQIPANVVTMNSRVRFRDLHTAEEHVRTLVYPASLKDSHEQLSVMAPLGAA 97
Query: 130 LIGKELGDIISVNAPGGEK-TYEILQVLW 157
L+G +G+ I+ P GE+ E+L++L+
Sbjct: 98 LLGMHVGNQITWQLPNGEEARIEVLELLY 126
>gi|163748064|ref|ZP_02155383.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45]
gi|161378670|gb|EDQ03120.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45]
Length = 145
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ RA ++ + D + G V+ ++ +G +V Q AD+ +GLVS+ +PI
Sbjct: 46 EELGRARIVTPQRLRADVVDLGREVTYHDEATGKDHTVTLVLPQTADISNGLVSVMTPIG 105
Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQV 155
ALIG G + G + +IL+V
Sbjct: 106 VALIGLAEGAVFHWETREGQRRELKILKV 134
>gi|22124088|ref|NP_667511.1| nucleoside diphosphate kinase regulator [Yersinia pestis KIM 10]
gi|45443579|ref|NP_995118.1| nucleoside diphosphate kinase regulator [Yersinia pestis biovar
Microtus str. 91001]
gi|51597830|ref|YP_072021.1| nucleoside diphosphate kinase regulator [Yersinia
pseudotuberculosis IP 32953]
gi|108809699|ref|YP_653615.1| nucleoside diphosphate kinase regulator [Yersinia pestis Antiqua]
gi|108813637|ref|YP_649404.1| nucleoside diphosphate kinase regulator [Yersinia pestis Nepal516]
gi|145597618|ref|YP_001161694.1| nucleoside diphosphate kinase regulator [Yersinia pestis Pestoides
F]
gi|153948732|ref|YP_001399422.1| nucleoside diphosphate kinase regulator [Yersinia
pseudotuberculosis IP 31758]
gi|153997370|ref|ZP_02022470.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
CA88-4125]
gi|162421792|ref|YP_001605709.1| nucleoside diphosphate kinase regulator [Yersinia pestis Angola]
gi|165928305|ref|ZP_02224137.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937429|ref|ZP_02225992.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. IP275]
gi|166212183|ref|ZP_02238218.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167400655|ref|ZP_02306164.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167426754|ref|ZP_02318507.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468355|ref|ZP_02333059.1| regulator of nucleoside diphosphate kinase [Yersinia pestis FV-1]
gi|170022744|ref|YP_001719249.1| nucleoside diphosphate kinase regulator [Yersinia
pseudotuberculosis YPIII]
gi|186897022|ref|YP_001874134.1| nucleoside diphosphate kinase regulator [Yersinia
pseudotuberculosis PB1/+]
gi|218930702|ref|YP_002348577.1| nucleoside diphosphate kinase regulator [Yersinia pestis CO92]
gi|229836848|ref|ZP_04457013.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
Pestoides A]
gi|229839254|ref|ZP_04459413.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229899819|ref|ZP_04514960.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229904131|ref|ZP_04519242.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
Nepal516]
gi|270488565|ref|ZP_06205639.1| regulator of nucleoside diphosphate kinase [Yersinia pestis KIM
D27]
gi|294505286|ref|YP_003569348.1| nucleoside diphosphate kinase regulator [Yersinia pestis Z176003]
gi|21956837|gb|AAM83762.1|AE013616_8 regulator of nucleoside diphosphate kinase [Yersinia pestis KIM 10]
gi|45438449|gb|AAS63995.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Microtus str. 91001]
gi|51591112|emb|CAH22776.1| regulator of nucleoside diphosphate kinase [Yersinia
pseudotuberculosis IP 32953]
gi|108777285|gb|ABG19804.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
Nepal516]
gi|108781612|gb|ABG15670.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
Antiqua]
gi|115349313|emb|CAL22282.1| regulator of nucleoside diphosphate kinase [Yersinia pestis CO92]
gi|145209314|gb|ABP38721.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
Pestoides F]
gi|149289007|gb|EDM39087.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
CA88-4125]
gi|152960227|gb|ABS47688.1| regulator of nucleoside diphosphate kinase [Yersinia
pseudotuberculosis IP 31758]
gi|162354607|gb|ABX88555.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Angola]
gi|165914534|gb|EDR33148.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. IP275]
gi|165919693|gb|EDR37026.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. F1991016]
gi|166206929|gb|EDR51409.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167050023|gb|EDR61431.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054281|gb|EDR64102.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749278|gb|ACA66796.1| GreA/GreB family elongation factor [Yersinia pseudotuberculosis
YPIII]
gi|186700048|gb|ACC90677.1| GreA/GreB family elongation factor [Yersinia pseudotuberculosis
PB1/+]
gi|229678249|gb|EEO74354.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
Nepal516]
gi|229687311|gb|EEO79386.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229695620|gb|EEO85667.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229705791|gb|EEO91800.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
Pestoides A]
gi|262363349|gb|ACY60070.1| nucleoside diphosphate kinase regulator [Yersinia pestis D106004]
gi|262367273|gb|ACY63830.1| nucleoside diphosphate kinase regulator [Yersinia pestis D182038]
gi|270337069|gb|EFA47846.1| regulator of nucleoside diphosphate kinase [Yersinia pestis KIM
D27]
gi|294355745|gb|ADE66086.1| nucleoside diphosphate kinase regulator [Yersinia pestis Z176003]
gi|320017137|gb|ADW00709.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 136
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ RAE++ + + D + + V ++ NS ++ +V + +S+ +P+
Sbjct: 36 EELDRAEILPPNEIPADVVTMNSRVRFLDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLG 95
Query: 128 RALIGKELGDIISVNAPGGEKT-YEILQVLW 157
AL+G + D IS PGG++T +L++L+
Sbjct: 96 AALLGLHVNDEISWKLPGGDETRITVLELLY 126
>gi|218533329|ref|YP_002424144.1| GreA/GreB family elongation factor [Methylobacterium
chloromethanicum CM4]
gi|218525632|gb|ACK86216.1| GreA/GreB family elongation factor [Methylobacterium
chloromethanicum CM4]
Length = 140
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAF 88
R+ K A +G L+ A AA + G +A + + RA+V+ + +
Sbjct: 12 RLPKIKVTAEDHGRLAGLA--SAAMDRMPAVAGYLA---DELDRAQVVRSGRAAVGCVRM 66
Query: 89 GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE- 147
G V + +G + +V EAD+ G +S+ +P+ ALIG G I GE
Sbjct: 67 GCEVEFRDDTTGKVQAVTLVYPGEADIGQGRISVLTPVGAALIGLSAGQSIRWVTRMGET 126
Query: 148 KTYEILQVL 156
K +L V
Sbjct: 127 KRLTVLDVR 135
>gi|46206102|ref|ZP_00047698.2| COG0782: Transcription elongation factor [Magnetospirillum
magnetotacticum MS-1]
Length = 74
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
D + FGATV+++ + ++ ++IVG+ EAD +G +S +P+ARAL GK +GD ++V
Sbjct: 5 DDDVVRFGATVTVL-REDDTRQIFRIVGEDEADPAAGSISYVAPLARALTGKGVGDTVTV 63
Query: 142 NAPGGEKTYEILQVL 156
N +EI ++
Sbjct: 64 NG----HDFEIAEIR 74
>gi|254429947|ref|ZP_05043654.1| hypothetical protein ADG881_3177 [Alcanivorax sp. DG881]
gi|196196116|gb|EDX91075.1| hypothetical protein ADG881_3177 [Alcanivorax sp. DG881]
Length = 131
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + RA V+ M D + + + E+ G + + +V Q D VSI +P
Sbjct: 31 LEEELLRATVVAPEAMPADVVTMNSRIRCREQARGREMSLTLVYPQ--DNGPERVSILAP 88
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+ AL+G +G I AP G+ EIL V +
Sbjct: 89 VGAALLGLSVGQSIDWPAPNGKILKLEILAVEY 121
>gi|298291344|ref|YP_003693283.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
gi|296927855|gb|ADH88664.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
Length = 166
Score = 65.6 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 21 WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIST 80
R R + +E + A + ++ + + AE +D
Sbjct: 23 HRNLVTRRGLALIEAELARHRAALAAAGAKGDRDGAAQASRELRYWSSRRANAEPVDPPA 82
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
G+ I FG V+L E G ++ ++IVG+ EA+ + G ++ SP+ARAL+GK +GD +S
Sbjct: 83 -EGEAITFGMQVTL-EAEDGAQRRFRIVGEDEAEPREGRIAWISPVARALMGKWIGDEVS 140
Query: 141 VNAPGGEKTYEILQV 155
P G T EI+ V
Sbjct: 141 --LPVG--TMEIVAV 151
>gi|83747221|ref|ZP_00944263.1| Regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
UW551]
gi|207721693|ref|YP_002252132.1| regulator of nucleoside diphosphate kinase protein [Ralstonia
solanacearum MolK2]
gi|207744206|ref|YP_002260598.1| regulator of nucleoside diphosphate kinase protein [Ralstonia
solanacearum IPO1609]
gi|83726045|gb|EAP73181.1| Regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
UW551]
gi|206586855|emb|CAQ17440.1| regulator of nucleoside diphosphate kinase protein [Ralstonia
solanacearum MolK2]
gi|206595611|emb|CAQ62538.1| regulator of nucleoside diphosphate kinase protein [Ralstonia
solanacearum IPO1609]
Length = 134
Score = 65.2 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++++I RA V+ + D + + V + SG + + +V EAD+ + +S+ SP
Sbjct: 33 VDDLIARANVVPGDKIPADVVTMNSVVRVR-AASGVAQQWTLVYPDEADLAAARLSVCSP 91
Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+ AL+G GD + AP G I +++
Sbjct: 92 MGAALLGGRAGDAVHYVAPDGTTHALRIDAIVF 124
>gi|302525225|ref|ZP_07277567.1| GreA/GreB family elongation factor [Streptomyces sp. AA4]
gi|302434120|gb|EFL05936.1| GreA/GreB family elongation factor [Streptomyces sp. AA4]
Length = 148
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
E + + R+ +L++++ A V + G G +++ + G + + + E
Sbjct: 38 ERRQHRQARIRQLQDLLQNAVVGEDPPDDG-IAEPGMVLTVR-YDDGGVETFLLAARDEV 95
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
+ S SP+ RAL G + G+ P G
Sbjct: 96 GGGLEVYSPDSPLGRALHGAKPGEQREYEVPSG 128
>gi|299065804|emb|CBJ36982.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
CMR15]
Length = 138
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++++I RA V+ + D + + V + +G + + +V EA++ + +S+ SP
Sbjct: 37 VDDLIARANVVPGDRIPADVVTMNSVVRVH-AGAGTAQAWTLVYPDEANLAAARLSVLSP 95
Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+ AL+G +GD + AP G I +++
Sbjct: 96 MGAALLGGRVGDEVHYAAPDGSTHALRIDAIVF 128
>gi|300690546|ref|YP_003751541.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
PSI07]
gi|299077606|emb|CBJ50241.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
PSI07]
Length = 134
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++++I RA V+ + D + + V + SG + + +V EA++ + +S+ SP
Sbjct: 33 VDDLIARANVVPSDMIPADVVTMNSVVRVR-AGSGAAQEWTLVYPDEANLAAARLSVLSP 91
Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+ AL+G GD + AP G I +++
Sbjct: 92 MGSALLGGRAGDEVHYAAPDGSAHALRIDAIIF 124
>gi|188583383|ref|YP_001926828.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001]
gi|179346881|gb|ACB82293.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001]
Length = 137
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+ L + + R +++ T GD G+ V + ++G ++ +V +AD+ G VSI
Sbjct: 39 SFLSDELDRVQIVRGGTAEGDFARMGSRVDFRDNSTGRMQSVTLVYPGDADIAQGKVSIL 98
Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+PI ALIG G I GE + +L+V
Sbjct: 99 TPIGAALIGLSKGQSIDWATRTGEIRRLTVLEVR 132
>gi|160897843|ref|YP_001563425.1| GreA/GreB family elongation factor [Delftia acidovorans SPH-1]
gi|160363427|gb|ABX35040.1| GreA/GreB family elongation factor [Delftia acidovorans SPH-1]
Length = 134
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
+A + Q GR A LE + RA+V++ M + + +TV SG +V
Sbjct: 18 EALLDKQPAFPGREA-LEAELDRADVLEPKEMPPNVVTMNSTVRFTLLESGKSNTLTLVY 76
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+E D S VS+ +P+ AL+G +GD + P G+ T + + +
Sbjct: 77 PKEMDGSSDKVSVFAPVGIALLGLSVGDQSRMAGPSGQVTVRVDAIEF 124
>gi|300114334|ref|YP_003760909.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113]
gi|299540271|gb|ADJ28588.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113]
Length = 129
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ RA VI + + + + +++N+G+++ ++V +EA++++G +S+ +P+
Sbjct: 28 EELDRATVIPRERVPDRVVTMHSRLIYLDENTGERREVELVYPEEANMRAGKISVLAPVG 87
Query: 128 RALIGKELGDIISVNAPGGE-KTYEILQVLW 157
AL+G +G+ I P GE + + ++L+
Sbjct: 88 SALLGLSVGESIDWKFPSGEVRRLSVERILF 118
>gi|110634551|ref|YP_674759.1| nucleoside diphosphate kinase regulator [Mesorhizobium sp. BNC1]
gi|110285535|gb|ABG63594.1| GreA/GreB family elongation factor [Chelativorans sp. BNC1]
Length = 135
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V++ + + + G+T++ + G+ + +V EAD+ G VS+++P+
Sbjct: 39 SELERARVVEDAALPDTVVRMGSTLTYT-ADDGEPQTVSLVYPGEADIAQGRVSVTTPVG 97
Query: 128 RALIGKELGDIISVNAPGG-EKTYEILQVL 156
ALIG + I A G +++ +
Sbjct: 98 TALIGLSVNQTIDWTARDGRVHRLKVINIS 127
>gi|16126441|ref|NP_421005.1| transcription elongation factor regulatory protein [Caulobacter
crescentus CB15]
gi|221235222|ref|YP_002517658.1| transcription elongation factor regulatory protein [Caulobacter
crescentus NA1000]
gi|13423705|gb|AAK24173.1| transcription elongation factor GreA/GreB, family [Caulobacter
crescentus CB15]
gi|220964394|gb|ACL95750.1| transcription elongation factor greB [Caulobacter crescentus
NA1000]
Length = 160
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
+ + FG V+ E+ G + ++IVG+ +AD G +S +PIARAL+GK +G++
Sbjct: 89 DPAKSVVQFGDRVTF-EREDGRVQTFRIVGEDQADPAKGTISYIAPIARALLGKAVGEVS 147
Query: 140 SVNAPGGEKTYEILQV 155
+ APGGE EI +
Sbjct: 148 A--APGGEI--EITAI 159
>gi|260773794|ref|ZP_05882709.1| regulator of nucleoside diphosphate kinase [Vibrio metschnikovii
CIP 69.14]
gi|260610755|gb|EEX35959.1| regulator of nucleoside diphosphate kinase [Vibrio metschnikovii
CIP 69.14]
Length = 136
Score = 65.2 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
A + + LEN + RA V++ + D + +TV + S D +V
Sbjct: 20 ALMDKLPKLSKELERLENELDRATVLNPEEIPADVVTMNSTVKFKFQGSDDVMQKTLVYP 79
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+ +SI +P+ AL+G G ++ P G E+T EI+ ++
Sbjct: 80 HDVKGNDD-ISIFAPVGSALLGLSKGQQLTWPMPNGVERTIEIIDII 125
>gi|123443968|ref|YP_001007938.1| nucleoside diphosphate kinase regulator [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|122090929|emb|CAL13811.1| regulator of nucleoside diphosphate kinase [Yersinia enterocolitica
subsp. enterocolitica 8081]
Length = 136
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ RAE++ + + D + + V + NS ++ +V + +S+ +P+
Sbjct: 36 EELDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLG 95
Query: 128 RALIGKELGDIISVNAPGGEK-TYEILQVLW 157
AL+G + D IS PGG++ +L++L+
Sbjct: 96 AALLGLHVNDEISWKLPGGDEARITVLELLY 126
>gi|163747966|ref|ZP_02155295.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45]
gi|161378763|gb|EDQ03203.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45]
Length = 146
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 7/125 (5%)
Query: 34 ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVS 93
I A L E AE R E I RA++++ M GD + G+ V+
Sbjct: 19 ILNAADLVHLEELAE--GMMHRHPTLADR--FFEE-IGRAQIVEDQQMPGDVVGIGSKVT 73
Query: 94 LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA--PGGEKTYE 151
++ +G K+ +V ++AD+ VS+ +PI AL+G G +
Sbjct: 74 YRDETTGQNKSVTLVYPEDADITRSQVSVITPIGVALLGLREGASFYWDTRRENQRHMLT 133
Query: 152 ILQVL 156
IL+V
Sbjct: 134 ILKVE 138
>gi|159042970|ref|YP_001531764.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12]
gi|157910730|gb|ABV92163.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12]
Length = 148
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
RPRI+ + L+E A + R+ E I RA ++ + M +
Sbjct: 17 RRPRIVINADDLSHIEALAE-----GAMDRNPALADRLLE---EIARARIVPAAKMPLNV 68
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
I G + + ++ +G ++ +V ++AD+ VS+ +PI AL+G G + N G
Sbjct: 69 IGIGKSATFRDETTGQERTVTLVYPEDADISRARVSVMTPIGVALLGLAEGAVFHWNTRG 128
Query: 146 GEKT-YEILQVL 156
E+ +++V
Sbjct: 129 EERRMLTVIRVS 140
>gi|332293562|ref|YP_004432171.1| GreA/GreB family elongation factor [Krokinobacter diaphorus
4H-3-7-5]
gi|332171648|gb|AEE20903.1| GreA/GreB family elongation factor [Krokinobacter diaphorus
4H-3-7-5]
Length = 167
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 16/152 (10%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VTS G ++++EL + L E E + + + G+
Sbjct: 30 YVTSHGLSQLKEELSTLDTK--------------ISTLDETDERER-RRALAVLNGKRNL 74
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L I ++D I FGATV+ QIVG EA V+ ++ ++P
Sbjct: 75 LLERIQSVRLLDHIK-DEGEIRFGATVTYTIAGMPKPITIQIVGVDEASVKDKKIAFTAP 133
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
IARALIGK + + + E+ I +++
Sbjct: 134 IARALIGKRIDETTTFQLGNEERKLTIKNIVY 165
>gi|300724985|ref|YP_003714310.1| regulator of nucleoside diphosphate kinase [Xenorhabdus nematophila
ATCC 19061]
gi|297631527|emb|CBJ92234.1| regulator of nucleoside diphosphate kinase [Xenorhabdus nematophila
ATCC 19061]
Length = 136
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P+II +A L E + LNE + RAE++ + D +
Sbjct: 4 PKIIINELDAERLDSLLEQPAFANTGIADALNE--------ELDRAEILPPVDIPADVVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ + ++ S +++ +V + +S+ +P+ AL+G + I+ P GE
Sbjct: 56 MNSEIRFIDLGSNEERVRTLVYPASLQDSTKQLSVMAPLGAALLGLRVNGEITCQLPNGE 115
Query: 148 KT-YEILQVLW 157
+T ++L++L+
Sbjct: 116 ETRIKVLEILY 126
>gi|270263263|ref|ZP_06191533.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
gi|270042951|gb|EFA16045.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
Length = 136
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RAE++ + + + + + V + ++ ++ +V +S+ +P+
Sbjct: 36 DELDRAEILPPAQIPANVVTMNSRVRFRDLHTAEEHVRTLVYPASLKDSHEQLSVMAPLG 95
Query: 128 RALIGKELGDIISVNAPGGEK-TYEILQVLW 157
AL+G +G+ I+ P GE+ E+L++L+
Sbjct: 96 AALLGMHVGNQITWQLPNGEEARIEVLELLY 126
>gi|89891757|ref|ZP_01203260.1| hypothetical protein BBFL7_01019 [Flavobacteria bacterium BBFL7]
gi|89516092|gb|EAS18756.1| hypothetical protein BBFL7_01019 [Flavobacteria bacterium BBFL7]
Length = 139
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 43 LSENAEYQAAKELQN--------LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94
+ E EY K + N + + L + + A+++D M D I F + +++
Sbjct: 7 ILEKKEYVYLKRILNISGYAEDFETQKSLQRLTDELKNAQILDELDMPQDVIRFNSKITV 66
Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
N G K QIV D+ +SI +P+A AL+G DII N P G + EI++
Sbjct: 67 K-SNKGWSKKIQIVIPALKDLDLDRISILTPLASALLGYAQSDIIQWNLPSGLQELEIVE 125
Query: 155 VL 156
V
Sbjct: 126 VT 127
>gi|330812543|ref|YP_004357005.1| GreA-GreB family transcriptional regulator [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327380651|gb|AEA72001.1| putative transcriptional regulator, GreA-GreB family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 136
Score = 64.5 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A + V+ + D + + V E++SG + +V Q+A+ G +SI
Sbjct: 31 IALQTELDRAENVVGHEEVPADVVTMNSRVHCREESSGKDYHLTLVYPQDANADEGRISI 90
Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+P+ AL+G ++G I APGG+ +L+V
Sbjct: 91 LAPVGSALLGLKVGQHIDWPAPGGKTLKLTLLEVE 125
>gi|237746097|ref|ZP_04576577.1| GreA/GreB family elongation factor [Oxalobacter formigenes HOxBLS]
gi|229377448|gb|EEO27539.1| GreA/GreB family elongation factor [Oxalobacter formigenes HOxBLS]
Length = 140
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 10/132 (7%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
ERP I + + NA+Y+ N MA+L+ + RA V++ + D
Sbjct: 13 ERPPITVTTHDYERLEQMLRNAKYR--------NIPGMADLQRELDRANVVEPEELPEDV 64
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
I +T ++ + D+ +V +AD S +S+ +P+ AL+G G I PG
Sbjct: 65 ITINSTARFIDDCTNDQYEITLVYPDKADGVS-KISVLAPVGSALLGLSAGQSIPWQVPG 123
Query: 146 GEK-TYEILQVL 156
+K +L V
Sbjct: 124 RQKLQLRVLDVK 135
>gi|83592278|ref|YP_426030.1| nucleoside diphosphate kinase regulator [Rhodospirillum rubrum ATCC
11170]
gi|83575192|gb|ABC21743.1| GreA/GreB family elongation factor [Rhodospirillum rubrum ATCC
11170]
Length = 136
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
I RA V+ ++ D + GA V+ ++++G + +V EAD+ G +SI +PI A
Sbjct: 46 IDRARVLPSESVPADVVTLGAEVTFRDESTGRVRKVTLVYPGEADIDQGKISIMTPIGVA 105
Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVL 156
LIG +G I G E+ +L V
Sbjct: 106 LIGLAVGASIDWLTRDGDERHLSVLAVR 133
>gi|125975505|ref|YP_001039415.1| GreA/GreB family elongation factor [Clostridium thermocellum ATCC
27405]
gi|256004207|ref|ZP_05429190.1| GreA/GreB family elongation factor [Clostridium thermocellum DSM
2360]
gi|281419462|ref|ZP_06250476.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20]
gi|125715730|gb|ABN54222.1| GreA/GreB family elongation factor [Clostridium thermocellum ATCC
27405]
gi|255991797|gb|EEU01896.1| GreA/GreB family elongation factor [Clostridium thermocellum DSM
2360]
gi|281406868|gb|EFB37132.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20]
gi|316939625|gb|ADU73659.1| transcription elongation factor GreA/GreB domain-containing protein
[Clostridium thermocellum DSM 1313]
Length = 160
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 2/129 (1%)
Query: 30 IIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFG 89
+ + E + E + + Q + + + + + V + + +
Sbjct: 18 VSEIEKERDMLLNEHYAEETKESINFQEFFKNYLDRINSYLNTVRVDKNGSEACPFVIIN 77
Query: 90 ATVSLVEKNSGDKKNYQIV--GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ V + + +K Y+IV +E D S SP+ RAL+ K + D +SV P G
Sbjct: 78 SIVEVFDCEEEEKCKYRIVLPFSKEYDTSIDCASCLSPLGRALLFKNVNDNVSVQIPTGM 137
Query: 148 KTYEILQVL 156
Y IL +
Sbjct: 138 LHYTILDIT 146
>gi|307543993|ref|YP_003896472.1| nucleoside diphosphate kinase regulator [Halomonas elongata DSM
2581]
gi|307216017|emb|CBV41287.1| nucleoside diphosphate kinase regulator [Halomonas elongata DSM
2581]
Length = 136
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 12/135 (8%)
Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
RP +I +A L + A A LE + R EV++ + D
Sbjct: 2 VARPPLIINRLDAERLQRLIDAAGEDAVA----------LSLEEELERGEVLEPEQIPAD 51
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII-SVNA 143
I+ + V + + +V D VS+ +P+ AL+G +GD+I
Sbjct: 52 VISMNSRVRFTDLTREREIVKTLVYPHALDATEDGVSVMAPVGAALLGLHVGDVIEEWPL 111
Query: 144 PGGEKT-YEILQVLW 157
PGG++T + +LW
Sbjct: 112 PGGKQTSLRVDAILW 126
>gi|332995758|gb|AEF05813.1| transcription elongation factor GreB [Alteromonas sp. SN2]
Length = 87
Score = 64.5 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136
D S +++ FGA V + G ++VG E + +SI SP+ARAL+GKE
Sbjct: 2 DYSPEQENKVYFGAWVEIEN-EQGQVLELRLVGYDEIFGRRDYISIDSPMARALVGKEED 60
Query: 137 DIISVNAPGGEKTYEILQVLW 157
D I+V K + I ++ +
Sbjct: 61 DDITVKTETDVKEWWINRIWY 81
>gi|229593308|ref|YP_002875427.1| nucleoside diphosphate kinase regulator [Pseudomonas fluorescens
SBW25]
gi|229365174|emb|CAY53437.1| regulator of nucleoside diphosphate kinase [Pseudomonas fluorescens
SBW25]
Length = 136
Score = 64.1 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
EV+ + + ++V E+ SG + +V ++A+ G +SI +P+ AL+G
Sbjct: 42 EVVGHDEVPATVVTMNSSVHCREQGSGKDYHLTLVYPKDANADEGKISILAPVGSALLGL 101
Query: 134 ELGDIISVNAPGGE-KTYEILQVL 156
++G I APGG+ E+L V
Sbjct: 102 KVGQHIDWPAPGGKTLKLELLSVE 125
>gi|325286071|ref|YP_004261861.1| GreA/GreB family elongation factor [Cellulophaga lytica DSM 7489]
gi|324321525|gb|ADY28990.1| GreA/GreB family elongation factor [Cellulophaga lytica DSM 7489]
Length = 139
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 1/94 (1%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A+L N + A V D M D I F + V++ + G +K++Q+V ++D+++ +SI
Sbjct: 35 IAKLNNELKTAAVKDEKDMPTDVIRFNSIVTVT-ADEGWQKSFQLVKPSDSDLKNKKLSI 93
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+P+ A+IG GD + P GEKT + V
Sbjct: 94 LTPMGTAVIGYAKGDKLLWEFPAGEKTLTVNNVE 127
>gi|240168559|ref|ZP_04747218.1| nucleoside diphosphate kinase regulator [Mycobacterium kansasii
ATCC 12478]
Length = 161
Score = 64.1 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 10/160 (6%)
Query: 1 MVDKIPVT---SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
M +++ T D + EL +Q I+ ++ GD + AE +
Sbjct: 1 MSEEVQSTGLAEAARDHLAAELARLRQRHDRLEIEVKNDRGMVGDHGDAAEAIQRADELA 60
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEAD 114
+ R+ EL+ + +G G T + G+ I+ +
Sbjct: 61 VLADRINELDRRLKSG----PLRDAGSDTLPGGTEVTLRFPDGEVVTMHVISIIEESPEG 116
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
++ ++ +SP+ +AL G++ GD ++ + P G E++
Sbjct: 117 HEAETLTANSPLGQALAGRQPGDTVTYSTPRGPSQVELIA 156
>gi|120598560|ref|YP_963134.1| GreA/GreB family elongation factor [Shewanella sp. W3-18-1]
gi|146293361|ref|YP_001183785.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32]
gi|120558653|gb|ABM24580.1| GreA/GreB family elongation factor [Shewanella sp. W3-18-1]
gi|145565051|gb|ABP75986.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32]
Length = 135
Score = 64.1 bits (155), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + RAE++ + M + + + V +S D ++V ++A+ + G +SI +P
Sbjct: 34 LEAELDRAEIVPATEMPDNVVTMNSLVKFSVSSSNDTFCLRLVYPKDANGE-GTISILAP 92
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+ AL+G GD I PGG I ++++
Sbjct: 93 VGSALLGLSQGDDIEWPGPGGTMVKVRIEEIVY 125
>gi|262191545|ref|ZP_06049727.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae CT
5369-93]
gi|262032553|gb|EEY51109.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae CT
5369-93]
Length = 135
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
RA V++ + M + + +TV S + +V + + VSI +P+ AL
Sbjct: 39 DRATVLEPAEMPDNVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 98 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125
>gi|153824399|ref|ZP_01977066.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MZO-2]
gi|149741953|gb|EDM55982.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MZO-2]
Length = 135
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
RA V++ + M + + +TV S + +V + + VSI +P+ AL
Sbjct: 39 DRATVLEPAEMPDNVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 98 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125
>gi|220922751|ref|YP_002498053.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS
2060]
gi|219947358|gb|ACL57750.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS
2060]
Length = 141
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
AA++ +A + + RA+++ + G V + +G + +V
Sbjct: 33 AAQDRMPDVASCLA---DELDRAQIVAGRGRLPPFVRMGCQVEFRDDTTGRVQIVTLVYP 89
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
EA+++ G +S+ +PI ALIG G I+ G K+ +L V
Sbjct: 90 GEANIEQGKISVLTPIGAALIGLSTGQSITWETRSGLTKSLTVLDVR 136
>gi|213162024|ref|ZP_03347734.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E00-7866]
Length = 47
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
EAD + L+S++SPIAR LIGKE D++ + PGG+ YE+L+V ++
Sbjct: 1 EADFKQNLISVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 47
>gi|297580409|ref|ZP_06942336.1| nucleoside diphosphate kinase regulator [Vibrio cholerae RC385]
gi|297536055|gb|EFH74889.1| nucleoside diphosphate kinase regulator [Vibrio cholerae RC385]
Length = 135
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
RA V++ + M + + +TV S + +V + + VSI +P+ AL
Sbjct: 39 DRATVLEPAEMPDNVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97
Query: 131 IGKELGDIISVNAPGG-EKTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 98 LGLAVGQQLAWPMPGGTVKTLEIIDIVY 125
>gi|319426662|gb|ADV54736.1| regulator of nucleoside diphosphate kinase, Rnk [Shewanella
putrefaciens 200]
Length = 135
Score = 63.7 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + RAE++ + M + + + V +S D ++V ++A+ + G +SI +P
Sbjct: 34 LEAELDRAEIVPATEMPDNVVTMNSLVKFSVSSSNDTFCLRLVYPKDANGE-GTISILAP 92
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+ AL+G GD I PGG I ++++
Sbjct: 93 VGSALLGLSQGDDIEWPGPGGTMVKVRIEEIVY 125
>gi|331697299|ref|YP_004333538.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans
CB1190]
gi|326951988|gb|AEA25685.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans
CB1190]
Length = 151
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 11/146 (7%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
+ +EL + R IS+ D E+ A ++ + + R+ +L
Sbjct: 11 ALLEELDLLRARRRELEWSLISDDHRPHDFGEHGATTALRDEIDWVDRRIRDL-----VH 65
Query: 74 EVIDISTMSGD---RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
+V + GD R+ + V+L + G + Q+ + D V+ SP+ RAL
Sbjct: 66 QVWEAGRPDGDTSERVGLYSVVTLRFPD-GSSETLQV--TRFPDEDVPAVTPESPLGRAL 122
Query: 131 IGKELGDIISVNAPGGEKTYEILQVL 156
+G + GD I+ AP G + +V
Sbjct: 123 LGAQPGDEITWKAPDGRLRARVERVR 148
>gi|70730822|ref|YP_260563.1| acetyltransferase [Pseudomonas fluorescens Pf-5]
gi|68345121|gb|AAY92727.1| acetyltransferase, GNAT family family [Pseudomonas fluorescens
Pf-5]
Length = 379
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE+ + RA V+ ++ + I + L ++ +V ++AD +G S+
Sbjct: 277 IVELEHELERAIVVKPQQVARNVITMNSRALLQ--LDDEEIEVALVYPEDADSTAGKHSV 334
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S I A++G + GD I + EI +VL+
Sbjct: 335 YSDIGAAILGYQEGDTIDWRISDRTRRIEIRKVLY 369
>gi|17547355|ref|NP_520757.1| regulator of nucleoside diphosphate kinase transcription regulator
protein [Ralstonia solanacearum GMI1000]
gi|17429658|emb|CAD16343.1| putative regulator of nucleoside diphosphate kinase transcription
regulator protein [Ralstonia solanacearum GMI1000]
Length = 134
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++++I RA V+ + D + + V + +G + + +V EA++ + +S+ SP
Sbjct: 33 VDDLIVRANVVPGDRIPADVVTMNSVVRVH-AGAGTAQEWTLVYPDEANLAAARLSVLSP 91
Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+ AL+G GD + AP G I +++
Sbjct: 92 MGAALLGGRAGDEVHYAAPDGSTHALRIDAIVF 124
>gi|15601365|ref|NP_232996.1| nucleoside diphosphate kinase regulator [Vibrio cholerae O1 biovar
eltor str. N16961]
gi|121587466|ref|ZP_01677234.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae
2740-80]
gi|121725791|ref|ZP_01679091.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae V52]
gi|147672055|ref|YP_001215388.1| nucleoside diphosphate kinase regulator [Vibrio cholerae O395]
gi|153817965|ref|ZP_01970632.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae NCTC
8457]
gi|153830764|ref|ZP_01983431.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 623-39]
gi|227812174|ref|YP_002812184.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae M66-2]
gi|229506224|ref|ZP_04395733.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae BX
330286]
gi|229509917|ref|ZP_04399397.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae B33]
gi|229516522|ref|ZP_04405969.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC9]
gi|229525966|ref|ZP_04415370.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae bv.
albensis VL426]
gi|229528560|ref|ZP_04417951.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae
12129(1)]
gi|229605764|ref|YP_002876468.1| nucleoside diphosphate kinase regulator [Vibrio cholerae MJ-1236]
gi|254849767|ref|ZP_05239117.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MO10]
gi|255746617|ref|ZP_05420564.1| regulator of nucleoside diphosphate kinase [Vibrio cholera CIRS
101]
gi|262158791|ref|ZP_06029904.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae INDRE
91/1]
gi|262168458|ref|ZP_06036154.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC27]
gi|298499416|ref|ZP_07009222.1| nucleoside diphosphate kinase regulator [Vibrio cholerae MAK 757]
gi|9658019|gb|AAF96508.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|121548301|gb|EAX58367.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae
2740-80]
gi|121631556|gb|EAX63924.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae V52]
gi|126511503|gb|EAZ74097.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae NCTC
8457]
gi|146314438|gb|ABQ18978.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae O395]
gi|148873748|gb|EDL71883.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 623-39]
gi|227011316|gb|ACP07527.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae M66-2]
gi|227015333|gb|ACP11542.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae O395]
gi|229334922|gb|EEO00408.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae
12129(1)]
gi|229336124|gb|EEO01142.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae bv.
albensis VL426]
gi|229346403|gb|EEO11374.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC9]
gi|229352362|gb|EEO17302.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae B33]
gi|229356575|gb|EEO21493.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae BX
330286]
gi|229372250|gb|ACQ62672.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae
MJ-1236]
gi|254845472|gb|EET23886.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MO10]
gi|255736371|gb|EET91769.1| regulator of nucleoside diphosphate kinase [Vibrio cholera CIRS
101]
gi|262022987|gb|EEY41692.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC27]
gi|262029364|gb|EEY48015.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae INDRE
91/1]
gi|297541397|gb|EFH77448.1| nucleoside diphosphate kinase regulator [Vibrio cholerae MAK 757]
gi|327485632|gb|AEA80038.1| Regulator of nucleoside diphosphate kinase [Vibrio cholerae
LMA3894-4]
Length = 135
Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
RA V++ + M D + +TV S + +V + + VSI +P+ AL
Sbjct: 39 DRATVLEPAEMPEDVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 98 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125
>gi|261212380|ref|ZP_05926665.1| regulator of nucleoside diphosphate kinase [Vibrio sp. RC341]
gi|260838311|gb|EEX64967.1| regulator of nucleoside diphosphate kinase [Vibrio sp. RC341]
Length = 135
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
RA V++ + M + + +TV S + +V + + VSI +P+ AL
Sbjct: 39 DRATVLEPAEMPDNVVTMNSTVRFKFLGSDEVMEKTLVYPNDMKSSAD-VSIFAPVGSAL 97
Query: 131 IGKELGDIISVNAPGG-EKTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 98 LGLAVGQQLAWPMPGGTVKTLEIIDIVY 125
>gi|70733293|ref|YP_263067.1| nucleoside diphosphate kinase regulator [Pseudomonas fluorescens
Pf-5]
gi|68347592|gb|AAY95198.1| regulator of nucleoside diphosphate kinase [Pseudomonas fluorescens
Pf-5]
Length = 137
Score = 63.7 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A + ++ + + + V E++SG + +V Q+A+ G +SI
Sbjct: 32 IALQTELDRAETLVGHDEVPAGVVTMNSRVHCREESSGKDYHLTLVYPQDANADEGKISI 91
Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+P+ AL+G ++G I APGG+ +L+V +
Sbjct: 92 LAPVGSALLGLQVGQYIDWPAPGGKTLKLTLLEVEY 127
>gi|90422718|ref|YP_531088.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
BisB18]
gi|90104732|gb|ABD86769.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
BisB18]
Length = 154
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
++ FG+TV++ +N ++ ++IVG+ EAD +G +S P+AR+L GK +GD++
Sbjct: 85 DVTKVRFGSTVTIR-RNDDRRQTFRIVGEDEADPPNGTISHVLPLARSLFGKRVGDVVR- 142
Query: 142 NAPGGEKTYEILQV 155
G EI +V
Sbjct: 143 ---AGTGEAEIEEV 153
>gi|291300234|ref|YP_003511512.1| GreA/GreB family elongation factor [Stackebrandtia nassauensis DSM
44728]
gi|290569454|gb|ADD42419.1| GreA/GreB family elongation factor [Stackebrandtia nassauensis DSM
44728]
Length = 152
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
Query: 1 MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
M K P+ + ++Q+L + ER R+ +++ GD ++ A+ L
Sbjct: 1 MAGKSAPIGANARHTLEQDLAEVRA-ERDRVAATLTDTDTTGDSADQAQELQRVTDLQLL 59
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ R+ +L + + + D + G+TV++ + + I + ADV L
Sbjct: 60 DARVEKLTARLDAS--ATATQGRTDLVDVGSTVTIRFSDD-TTETLHI--GEIADVDDQL 114
Query: 120 -VSISSPIARALIGKELGDIISVNAPGG 146
V+ SP+ RAL+G GD +S N P G
Sbjct: 115 LVTAGSPLGRALLGHRAGDTVSYNTPSG 142
>gi|313676808|ref|YP_004054804.1| grea/greb family elongation factor [Marivirga tractuosa DSM 4126]
gi|312943506|gb|ADR22696.1| GreA/GreB family elongation factor [Marivirga tractuosa DSM 4126]
Length = 149
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 2/125 (1%)
Query: 32 KAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGAT 91
+ I E + +N + + NE + +L N ++ A V + M D I G+
Sbjct: 26 QIILEEMEF-QFIQNLVKKFLASDETQNEAWIIKLTNELSNAIVKRENEMPVDVIKIGSK 84
Query: 92 VSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYE 151
V + E G + N +V E ++ +S+ SP+ ALIG GD + + P G+ T +
Sbjct: 85 VDV-ETPYGRRNNIILVKPTEKNINENKISLLSPMGSALIGYAKGDEVDWDLPKGKSTIK 143
Query: 152 ILQVL 156
IL V+
Sbjct: 144 ILNVV 148
>gi|229513214|ref|ZP_04402679.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TMA 21]
gi|229349624|gb|EEO14579.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TMA 21]
Length = 135
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
RA V++ + M + + +TV S + +V + + VSI +P+ AL
Sbjct: 39 DRATVLEPAEMPENVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 98 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125
>gi|153217601|ref|ZP_01951282.1| nucleoside diphosphate kinase regulator [Vibrio cholerae 1587]
gi|124113451|gb|EAY32271.1| nucleoside diphosphate kinase regulator [Vibrio cholerae 1587]
Length = 109
Score = 63.3 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
RA V++ + M + + +TV S + +V + + VSI +P+ AL
Sbjct: 13 DRATVLEPAEMPENVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 71
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 72 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 99
>gi|229523094|ref|ZP_04412506.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TM
11079-80]
gi|229339944|gb|EEO04954.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TM
11079-80]
Length = 135
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
RA V++ + M + + +TV S + +V + + VSI +P+ AL
Sbjct: 39 DRATVLEPAEMPDNVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 98 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125
>gi|18034019|gb|AAL57322.1|AF395125_3 GreA [Borrelia hermsii]
Length = 81
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 35/71 (49%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ FG V+++ K++G ++ Y I G E++ G++S SP L+ + GD +
Sbjct: 6 VGFGTKVTMINKDTGREEFYLIFGPWESNPDEGIISYKSPFGENLLDAKEGDNLDFVIND 65
Query: 146 GEKTYEILQVL 156
Y + ++
Sbjct: 66 TRFQYYVKKIE 76
>gi|77461715|ref|YP_351222.1| nucleoside diphosphate kinase regulator [Pseudomonas fluorescens
Pf0-1]
gi|77385718|gb|ABA77231.1| regulator of nucleoside diphosphate kinase [Pseudomonas fluorescens
Pf0-1]
Length = 136
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A + ++ + D + + V E++SG + +V + A+ G VSI
Sbjct: 31 IALQTELDRADTLVGHDEVPADVVTMNSRVHCREESSGKDYHLTLVYPKHANADEGKVSI 90
Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
+P+ AL+G ++G I APGG+ +L+V
Sbjct: 91 LAPVGSALLGLKVGQHIDWPAPGGKTLKLTLLEVE 125
>gi|84499314|ref|ZP_00997602.1| putative nucleoside diphosphate kinase regulator [Oceanicola
batsensis HTCC2597]
gi|84392458|gb|EAQ04669.1| putative nucleoside diphosphate kinase regulator [Oceanicola
batsensis HTCC2597]
Length = 147
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP+++ R L+E A Q +L + G + RA ++ + + + +
Sbjct: 14 RPKVVIGADCLRRLEALAEGA-IQRNPDLADRLLGEI-------GRARIVPAAKLPQNVV 65
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G V+ ++ +G +K V ++AD+ G +SI +PI ALIG G + + G
Sbjct: 66 AIGRAVTYRDETTGQEKRVTPVFPEDADIARGRISILTPIGVALIGLAEGASLHWDTRDG 125
Query: 147 EKTY-EILQV 155
E+ +L V
Sbjct: 126 ERRVLTVLHV 135
>gi|255319745|ref|ZP_05360952.1| GreA/GreB family elongation factor [Acinetobacter radioresistens
SK82]
gi|262379537|ref|ZP_06072693.1| GreA/GreB family elongation factor [Acinetobacter radioresistens
SH164]
gi|255303199|gb|EET82409.1| GreA/GreB family elongation factor [Acinetobacter radioresistens
SK82]
gi|262298994|gb|EEY86907.1| GreA/GreB family elongation factor [Acinetobacter radioresistens
SH164]
Length = 134
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
E Q+ + LE+ + RAEV++ + + ++ V + S + Q+V +
Sbjct: 21 EHQSHMTQTIEHLEDELARAEVVEPHEIPANVVSMNTRVLITIAPSTEPTEIQLVYPHDF 80
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
G V++ +PI A++G G I P G +I +VL+
Sbjct: 81 RGDKGQVNVLAPIGAAILGLAEGQEIEWPQPDGHLMKVKIEKVLY 125
>gi|322834683|ref|YP_004214710.1| GreA/GreB family elongation factor [Rahnella sp. Y9602]
gi|321169884|gb|ADW75583.1| GreA/GreB family elongation factor [Rahnella sp. Y9602]
Length = 136
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ RAE++ + D + + V E G++ +V +S+ +P+
Sbjct: 36 EELDRAEILPPEQIPADVVTMNSKVRFTEGKDGEEHIRTLVYPAALKDSKEQLSVMAPLG 95
Query: 128 RALIGKELGDIISVNAPGGEKT-YEILQVLW 157
AL+G G I+ P GE + E+L++L+
Sbjct: 96 AALLGLRTGGSITWEMPNGENSRIEVLELLY 126
>gi|33598202|ref|NP_885845.1| putative enzyme-regulator fusion protein [Bordetella parapertussis
12822]
gi|33603098|ref|NP_890658.1| putative enzyme-regulator fusion protein [Bordetella bronchiseptica
RB50]
gi|33566760|emb|CAE38973.1| putative enzyme-regulator fusion protein [Bordetella parapertussis]
gi|33568729|emb|CAE34487.1| putative enzyme-regulator fusion protein [Bordetella bronchiseptica
RB50]
Length = 320
Score = 62.9 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 48/95 (50%), Gaps = 2/95 (2%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+AELE+ + RA V+D ++G+ + + L+ + ++ +V +AD +G +S+
Sbjct: 218 LAELEHEVERAVVVDPRQVAGNVVTMNSRA-LLNVDD-EQVEVALVYPDDADDSAGKLSV 275
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S A++G + GD + + I +VL+
Sbjct: 276 FSDFGTAILGYQEGDAVDWRISDRTRRIWIEKVLY 310
>gi|288962542|ref|YP_003452837.1| regulator of nucleoside diphosphate kinase [Azospirillum sp. B510]
gi|288914808|dbj|BAI76293.1| regulator of nucleoside diphosphate kinase [Azospirillum sp. B510]
Length = 166
Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA VI+ ++ + GA V+ ++ +G ++ +V ++AD+ + VS+ +PI A
Sbjct: 68 LERAAVIEEGELATGVVTMGARVAFRDEVTGQERTVTLVYPRDADLAACRVSVLTPIGAA 127
Query: 130 LIGKELGDIISVNAPGGE-KTYEILQVL 156
LIG G I+ GE K +L V
Sbjct: 128 LIGVAEGQSITWYTREGEAKILTVLAVE 155
>gi|332163116|ref|YP_004299693.1| nucleoside diphosphate kinase regulator [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|318604001|emb|CBY25499.1| regulator of nucleoside diphosphate kinase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325667346|gb|ADZ43990.1| nucleoside diphosphate kinase regulator [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330862799|emb|CBX72941.1| regulator of nucleoside diphosphate kinase [Yersinia enterocolitica
W22703]
Length = 136
Score = 62.9 bits (152), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ RAE++ + + D + + V + NS ++ +V + +S+ +P+
Sbjct: 36 EELDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLG 95
Query: 128 RALIGKELGDIISVNAPGGEK-TYEILQVLW 157
AL+G + D IS PGG++ +L++L+
Sbjct: 96 AALLGLHVNDEISWKLPGGDEARIIVLELLY 126
>gi|260770384|ref|ZP_05879317.1| regulator of nucleoside diphosphate kinase [Vibrio furnissii CIP
102972]
gi|260615722|gb|EEX40908.1| regulator of nucleoside diphosphate kinase [Vibrio furnissii CIP
102972]
gi|315181451|gb|ADT88364.1| nucleoside diphosphate kinase regulator [Vibrio furnissii NCTC
11218]
Length = 135
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Query: 51 AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
A E + +LE+ + RA + + M + ++ +TV + +V
Sbjct: 19 ALLEKMPKLSPELEKLEDELDRATINEPQDMPDNVVSMNSTVRFKFTGKDEIIQKNLVYP 78
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
E +SI +P+ AL+G G ++ PGG EKT EI++V++
Sbjct: 79 HEVKNSDD-ISIFAPVGSALLGLAAGQTLTWPMPGGAEKTIEIIEVVY 125
>gi|312963811|ref|ZP_07778282.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
gi|311281846|gb|EFQ60456.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
Length = 136
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 50 QAAKELQNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV 108
+ + + + L+ + RAE V+ + + ++V E+ SG + +V
Sbjct: 17 EQLIDRMGETQPGVTALQAELDRAEAVVGHDEVPATVVTMNSSVHCREQGSGKDYHLTLV 76
Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
++A+ G +SI +P+ AL+G ++G I APGG+ E+L V
Sbjct: 77 YPKDANADEGKISILAPVGSALLGLQVGQHIDWPAPGGKTLKLELLSVE 125
>gi|332527739|ref|ZP_08403780.1| nucleoside diphosphate kinase regulator [Rubrivivax benzoatilyticus
JA2]
gi|332112137|gb|EGJ12113.1| nucleoside diphosphate kinase regulator [Rubrivivax benzoatilyticus
JA2]
Length = 139
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 57 NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
++E +++ AEV+D T+ D + + V L G+ + + +
Sbjct: 30 RVSEALADHARDMLDLAEVVDPKTLPADVVTMRSRVVLSR--GGELLDLTLCYPDDQPDG 87
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT 149
VS+ SP+ AL+G +GD I P GE+
Sbjct: 88 IERVSVFSPLGMALLGARVGDSIGWRGPAGEEH 120
>gi|296164629|ref|ZP_06847196.1| transcription elongation factor GreA [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295900048|gb|EFG79487.1| transcription elongation factor GreA [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 177
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 12/143 (8%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ +IP+T + + ++Q EL + + + A G + +A + +E++ L
Sbjct: 1 MTRIPITPRHYRRLQDELTALRARRSVEVPDDYLDYGARGGMRPSARQRRIREIERLLGA 60
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ G +++ +G+ + + D + S
Sbjct: 61 AA------------VRDDPAGERIAGPGMVLTIRYDATGETETLLLGRRGAEDADIKVYS 108
Query: 122 ISSPIARALIGKELGDIISVNAP 144
++SP+ R + G G+ P
Sbjct: 109 MASPLGRCIAGARPGEQRIYAIP 131
>gi|262173799|ref|ZP_06041476.1| regulator of nucleoside diphosphate kinase [Vibrio mimicus MB-451]
gi|261891157|gb|EEY37144.1| regulator of nucleoside diphosphate kinase [Vibrio mimicus MB-451]
Length = 171
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
RA V++ M + + +TV S + +V + + VSI +P+ AL
Sbjct: 75 DRATVLEPEEMPENVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 133
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 134 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 161
>gi|330825392|ref|YP_004388695.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans
K601]
gi|329310764|gb|AEB85179.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans
K601]
Length = 303
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE+ I RA V+D ++ D + + L + ++ +V ++AD +S+
Sbjct: 201 IFELEHEIERAVVVDPRQVAEDVVTMNSKALL--EVGNEEVQVALVYPEDADGGVEKLSV 258
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S I A++G + GD +P I +VL+
Sbjct: 259 CSGIGTAILGYKEGDAFDWRSPNRTCHIRIRKVLY 293
>gi|319763198|ref|YP_004127135.1| gcn5-related n-acetyltransferase [Alicycliphilus denitrificans BC]
gi|317117759|gb|ADV00248.1| GCN5-related N-acetyltransferase [Alicycliphilus denitrificans BC]
Length = 303
Score = 62.5 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE+ I RA V+D ++ D + + L + ++ +V ++AD +S+
Sbjct: 201 IFELEHEIERAVVVDPRQVAEDVVTMNSKALL--EVGNEEVQVALVYPEDADGGVEKLSV 258
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S I A++G + GD +P I +VL+
Sbjct: 259 CSGIGTAILGYKEGDAFDWRSPNRTCHIRIRKVLY 293
>gi|332290966|ref|YP_004429575.1| GreA/GreB family elongation factor [Krokinobacter diaphorus
4H-3-7-5]
gi|332169052|gb|AEE18307.1| GreA/GreB family elongation factor [Krokinobacter diaphorus
4H-3-7-5]
Length = 139
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ L N + A ++D M + I F + V++ + G +K Q+V + DV VS+
Sbjct: 35 LQRLSNELKSAHIVDDCDMPLNVIRFNSKVTVS-SDRGWEKTLQVVAPADKDVALSKVSV 93
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+P+ A+ G + G II+ P G + I +V+
Sbjct: 94 LTPMGSAIFGNKEGAIINWMFPSGMQELTITKVI 127
>gi|227328600|ref|ZP_03832624.1| transcription elongation factor GreA [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 79
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS 44
+ + P+T +G +K+++EL + RP II AI+EAR +GDL
Sbjct: 1 MKQFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLK 43
>gi|134094680|ref|YP_001099755.1| hypothetical protein HEAR1457 [Herminiimonas arsenicoxydans]
gi|133738583|emb|CAL61628.1| Putative transcription elongation factor GreA [Herminiimonas
arsenicoxydans]
Length = 139
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 4/111 (3%)
Query: 50 QAAKELQNLNEGRMAELE---NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106
+ A+ L L E + E +II+ + ++ I+ D ++ +TVS NS +K++
Sbjct: 17 KLAEHLLRLGEVEINAGEELIDIISTSVILPINAPRKDCVSLYSTVSYSPYNSDEKRSIT 76
Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
IV Q+A+ Q L+S +PI ALIG+++ I V P +IL V
Sbjct: 77 IVCPQDANPQLALISTLTPIGLALIGRKVSSTIEVELPSNRIEKIKILDVT 127
>gi|330501242|ref|YP_004378111.1| nucleoside diphosphate kinase regulator [Pseudomonas mendocina
NK-01]
gi|328915528|gb|AEB56359.1| nucleoside diphosphate kinase regulator [Pseudomonas mendocina
NK-01]
Length = 135
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + RAEV+ + + + V E++SG + +V Q+A G VSI +P
Sbjct: 34 LQAELDRAEVVGHDEVPAGVVTMNSRVHCREESSGKDYHLTLVYPQDAGGD-GKVSILAP 92
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+ AL+G +G I PGG++ +L+V +
Sbjct: 93 VGSALLGLSVGQHIDWPVPGGKQLKLTLLEVEY 125
>gi|254822488|ref|ZP_05227489.1| nucleoside diphosphate kinase regulator [Mycobacterium
intracellulare ATCC 13950]
Length = 159
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 10/161 (6%)
Query: 1 MVDKIPVTSKGFDK--IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
M K P ++ + ++ EL +Q + ++ GD + AE + +
Sbjct: 1 MSKKAP-SAADAARNNLEAELDRLRQRRDRLEAEVKNDRGMVGDHGDAAEAIQRADELVV 59
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEADV 115
R+ EL+ + + S + G V+L + G+ IV +
Sbjct: 60 LSDRINELDRRLRAG---PPDSDSSATLPGGTEVTLRFAD-GEVVTMHVISIVEETPVGR 115
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
++ ++ SP+A+AL G++ GD ++ + P GE E++ V
Sbjct: 116 EAETLTARSPLAQALAGRKPGDTVTYSTPQGENQVELIAVK 156
>gi|226941111|ref|YP_002796185.1| Transcription elongation factor [Laribacter hongkongensis HLHK9]
gi|226716038|gb|ACO75176.1| Transcription elongation factor [Laribacter hongkongensis HLHK9]
Length = 135
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+LE + RA+V+D M + + V + +G + +Q+ ++ +S+
Sbjct: 32 RQLETELARADVVDPQDMPAGVVTMNSRVRFADA-AGATREFQLCYPKDMTGSPDQLSVL 90
Query: 124 SPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+P+ AL+G G I P G T +L V+W
Sbjct: 91 APVGAALLGLSAGQAIDWPLPDGGHTRLTVLDVVW 125
>gi|119897107|ref|YP_932320.1| putative regulator of nucleoside diphosphate kinase [Azoarcus sp.
BH72]
gi|119669520|emb|CAL93433.1| putative regulator of nucleoside diphosphate kinase [Azoarcus sp.
BH72]
Length = 135
Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + RA+V + M D I + E+ SG + + ++AD +G VS+ SP
Sbjct: 33 LRAELDRADVREPEEMPADVITMNSRARFREETSGREYELTLAYPKDADGAAGKVSVFSP 92
Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
AL+G G I P G ++L+V+W
Sbjct: 93 AGSALLGLAAGQAIDWRTPEGSAIRLQVLEVVW 125
>gi|113969979|ref|YP_733772.1| GreA/GreB family elongation factor [Shewanella sp. MR-4]
gi|114047214|ref|YP_737764.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
gi|113884663|gb|ABI38715.1| GreA/GreB family elongation factor [Shewanella sp. MR-4]
gi|113888656|gb|ABI42707.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
Length = 135
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + RA+++ + M G+ + + V +S D ++V ++A G +SI +P
Sbjct: 34 LEAELDRADIVPAAQMPGNVVTMNSEVKFSVSSSNDTFCLRLVYPKDA-TGEGTISILAP 92
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+ AL+G GD I PGG I ++++
Sbjct: 93 VGSALLGLSQGDEIEWPGPGGTMVKVRIEEIMY 125
>gi|238751385|ref|ZP_04612878.1| Regulator of nucleoside diphosphate kinase [Yersinia rohdei ATCC
43380]
gi|238710443|gb|EEQ02668.1| Regulator of nucleoside diphosphate kinase [Yersinia rohdei ATCC
43380]
Length = 152
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 9/142 (6%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
E+ +P I +A L + + LNE + RAE++
Sbjct: 9 AEIELESGMTKPTITINELDAERLDALLAQPAFAGSVVATALNE--------ELDRAEIL 60
Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136
+ D + + V + S ++ +V + +S+ +P+ AL+G +
Sbjct: 61 PPHAIPADVVTMNSRVRFRDLKSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGLHIN 120
Query: 137 DIISVNAPGGEK-TYEILQVLW 157
D I+ P G++ +L++L+
Sbjct: 121 DEINWTLPSGDEARIIVLELLY 142
>gi|146275634|ref|YP_001165794.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
gi|145322325|gb|ABP64268.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
Length = 151
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 9/121 (7%)
Query: 38 RAYGDLSENAEYQAAKELQNLNEGR-MAELENIITRAEVIDISTMSGDRIAFGATVSLVE 96
RA D E A E + R + + A+V+D D +AFG+TV+ V
Sbjct: 38 RARVDEIEAHLADAVDEEEIKKLRRELRYWSTRQSTAQVMDPPQ--ADVVAFGSTVTFV- 94
Query: 97 KNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155
+G + IVG EAD +GL++ S+P+ARAL G E G+ + GG E+L +
Sbjct: 95 -LNGQNRRITIVGHDEADPTAGLIAFSAPLARALNGAEAGETVDF---GGRADAIEVLSI 150
Query: 156 L 156
Sbjct: 151 E 151
>gi|118466969|ref|YP_879527.1| nucleoside diphosphate kinase regulator [Mycobacterium avium 104]
gi|118168256|gb|ABK69153.1| nucleoside diphosphate kinase regulator [Mycobacterium avium 104]
Length = 158
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 7/147 (4%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
++ EL +Q ++ ++ GD + AE + + R+ EL+ +
Sbjct: 14 KNLEAELDRLRQRRDRLEVEVKNDRGMVGDHGDAAEAIQRADELVVLSDRINELDRRLRA 73
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEADVQSGLVSISSPIARA 129
G T + G+ IV + + ++ SP+A+A
Sbjct: 74 G----PPDADTSATLPGGTEVTLRFADGEVVTMHVISIVEETPVGREGETLTARSPLAQA 129
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156
L G++ GD ++ P GEK E++ V
Sbjct: 130 LAGRQPGDTVTYPTPQGEKQVELIAVK 156
>gi|254773292|ref|ZP_05214808.1| nucleoside diphosphate kinase regulator [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 158
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 7/147 (4%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
++ EL +Q ++ ++ GD + AE + + R+ EL+ +
Sbjct: 14 KNLEAELDRLRQRRDRLEVEVKNDRGMVGDHGDAAEAIQRADELVVLSDRINELDRRLRA 73
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEADVQSGLVSISSPIARA 129
G T + G+ IV + + ++ SP+A+A
Sbjct: 74 G----PPDADTSATLPGGTEVTLRFADGEVVTMQVISIVEETPVGREGETLTARSPLAQA 129
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156
L G++ GD ++ P GEK E++ V
Sbjct: 130 LAGRQPGDTVTYPTPQGEKQVELIAVK 156
>gi|254447837|ref|ZP_05061302.1| transcription elongation factor [gamma proteobacterium HTCC5015]
gi|198262617|gb|EDY86897.1| transcription elongation factor [gamma proteobacterium HTCC5015]
Length = 138
Score = 61.8 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 17/80 (21%), Positives = 32/80 (40%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ R ++ +S D + + V ++ + + + VSI +PI
Sbjct: 38 EELYRCRIVSSQEVSPDVVTMNSRVKYTRLDTQQQSTLTLCYPDQISRADDAVSILAPIG 97
Query: 128 RALIGKELGDIISVNAPGGE 147
A+IG +G II P G+
Sbjct: 98 SAIIGLSVGQIIDWPLPNGK 117
>gi|254695666|ref|ZP_05157494.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 3
str. Tulya]
gi|261216066|ref|ZP_05930347.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 3
str. Tulya]
gi|260917673|gb|EEX84534.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 3
str. Tulya]
Length = 169
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL + RA+V+ + + + G+TV N G ++ +V EAD+ +SI +
Sbjct: 38 ELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILT 96
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155
PI ALIG G IS A G++ +L+V
Sbjct: 97 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 128
>gi|242241060|ref|YP_002989241.1| nucleoside diphosphate kinase regulator [Dickeya dadantii Ech703]
gi|242133117|gb|ACS87419.1| GreA/GreB family elongation factor [Dickeya dadantii Ech703]
Length = 136
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 54/131 (41%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P + +A L E + + Q LN + RA ++ + D +
Sbjct: 4 PHLTINELDAERLDALLEQSAFAGTDVAQALNA--------ELDRAHIVAPVEIPPDVVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ V + + ++ +V S +S+ +P+ AL+G +G I+ P GE
Sbjct: 56 MNSRVRFRDLLTCEEHIRTLVYPATLKDSSEQISVMAPLGAALLGMHVGKTINWPLPNGE 115
Query: 148 KT-YEILQVLW 157
+T E++++L+
Sbjct: 116 ETRIEVMELLY 126
>gi|302530802|ref|ZP_07283144.1| predicted protein [Streptomyces sp. AA4]
gi|302439697|gb|EFL11513.1| predicted protein [Streptomyces sp. AA4]
Length = 155
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 10/148 (6%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ ++++E+ + +R + E GD ++ A+ E + ++A++
Sbjct: 12 LSEAARRQLEKEIADLRA-QREALSPQPGEQERTGDAADQADVIDRAEAAARLDRQIADV 70
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
+ + G VSL + GD++ + +V D + ++ SP+
Sbjct: 71 TAKLEHG------AYDSSLLPDGTRVSLRFSD-GDEEEFTVVTLPGEDADA--ITSDSPL 121
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
AL + G+ IS P G+ T +L+
Sbjct: 122 GLALATAKAGEEISYRTPRGQATATVLK 149
>gi|254720401|ref|ZP_05182212.1| nucleoside diphosphate kinase regulator [Brucella sp. 83/13]
gi|265985419|ref|ZP_06098154.1| nucleoside diphosphate kinase regulator [Brucella sp. 83/13]
gi|306839022|ref|ZP_07471843.1| nucleoside diphosphate kinase regulator [Brucella sp. NF 2653]
gi|264664011|gb|EEZ34272.1| nucleoside diphosphate kinase regulator [Brucella sp. 83/13]
gi|306405928|gb|EFM62186.1| nucleoside diphosphate kinase regulator [Brucella sp. NF 2653]
Length = 170
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL + RA+V+ + + + G+TV N G ++ +V EAD+ +SI +
Sbjct: 38 ELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILT 96
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155
PI ALIG G IS A G++ +L+V
Sbjct: 97 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 128
>gi|148558514|ref|YP_001257600.1| nucleoside diphosphate kinase regulator [Brucella ovis ATCC 25840]
gi|148369799|gb|ABQ62671.1| putative transcriptional regulator Rnk [Brucella ovis ATCC 25840]
Length = 146
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL + A+V+ + + + G+TV N G ++ +V EAD+ +SI +
Sbjct: 15 ELMAELDCAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILT 73
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155
PI ALIG G IS A G++ +L+V
Sbjct: 74 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 105
>gi|311108965|ref|YP_003981818.1| GNAT family acetyltransferase [Achromobacter xylosoxidans A8]
gi|310763654|gb|ADP19103.1| acetyltransferase, GNAT family protein/transcription elongation
factor, GreA/GreB family protein [Achromobacter
xylosoxidans A8]
Length = 320
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ ELE+ + RA V+ ++ + + + L ++ +V ++AD +G S+
Sbjct: 218 IVELEHELERAIVVTPQQVARNVVTMNSRALLQ--LDDEEMEVALVYPEDADSSAGKFSV 275
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S + A++G + GD I + I +VL+
Sbjct: 276 CSDVGAAILGYQEGDAIDWRISDRTRRIGIRKVLY 310
>gi|41406335|ref|NP_959171.1| nucleoside diphosphate kinase regulator [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41394683|gb|AAS02554.1| hypothetical protein MAP_0237c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 158
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 7/147 (4%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
++ EL +Q ++ ++ GD + AE + + R+ EL+ +
Sbjct: 14 KNLEAELDRLRQRRDRLEVEVKNDRGMVGDHGDAAEAIQRADELVVLSDRINELDRRLRA 73
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEADVQSGLVSISSPIARA 129
G T + G+ IV + + ++ SP+A+A
Sbjct: 74 G----PPDSDASATLPGGTEVTLRFADGEVVTMHVISIVEETPVGREGETLTARSPLAQA 129
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156
L G++ GD ++ P GEK E++ V
Sbjct: 130 LAGRQPGDTVTYPTPQGEKQVELIAVK 156
>gi|251791378|ref|YP_003006099.1| nucleoside diphosphate kinase regulator [Dickeya zeae Ech1591]
gi|247539999|gb|ACT08620.1| GreA/GreB family elongation factor [Dickeya zeae Ech1591]
Length = 136
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P + + +A L E + + Q L+E + RA+++ + D +
Sbjct: 4 PHLTISELDAERLDALLEQPAFADTEVAQALSE--------ELDRADIVQPIEIPADVVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ V + + ++ +V +S+ +P+ AL+G +G+ I+ P G+
Sbjct: 56 MNSRVRFRDLLTAEEHIRTLVYPAGLKDSREQISVMAPLGAALLGMHVGNSIAWPLPNGD 115
Query: 148 KT-YEILQVLW 157
KT E++++L+
Sbjct: 116 KTRIEVMELLY 126
>gi|78356295|ref|YP_387744.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
gi|78218700|gb|ABB38049.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans
subsp. desulfuricans str. G20]
Length = 137
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + RA +++ + + + V + SG ++V + + + VSI +P
Sbjct: 35 LERELERAIIVEPDKIPPTVVTMNSVVRFKLRPSGAVHRLKLVYPRHSAAEGETVSILAP 94
Query: 126 IARALIGKELGDIISV-NAPGGEKTYEILQVLW 157
+ AL+G GD I+ NA GG + + +
Sbjct: 95 VGSALLGLAEGDEITWPNASGGTLQLVVDHIEY 127
>gi|307129058|ref|YP_003881074.1| regulator of nucleoside diphosphate kinase [Dickeya dadantii 3937]
gi|306526587|gb|ADM96517.1| regulator of nucleoside diphosphate kinase [Dickeya dadantii 3937]
Length = 136
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P + + +A L E + + Q L+E + RA+++ + GD +
Sbjct: 4 PHLTISELDAERLDALLEQPAFADTEVAQALSE--------ELDRADIVQPVEIPGDVVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ V + + ++ +V +S+ +P+ AL+G +G+ I+ P GE
Sbjct: 56 MNSRVRFRDLLTTEEHIRTLVYPAGLKDSREQISVMAPLGAALLGMHVGNSIAWPLPNGE 115
Query: 148 KT-YEILQVLW 157
+T E++++L+
Sbjct: 116 ETRIEVMELLY 126
>gi|146305312|ref|YP_001185777.1| nucleoside diphosphate kinase regulator [Pseudomonas mendocina ymp]
gi|145573513|gb|ABP83045.1| GreA/GreB family elongation factor [Pseudomonas mendocina ymp]
Length = 135
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + RAEV+ + + + + V E++SG + +V Q+A + G VSI +P
Sbjct: 34 LQAELDRAEVVGLDEVPAGLVTMNSRVHCREESSGKDYHLTLVYPQDAGGE-GTVSILAP 92
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+ AL+G +G I APGG++ +L V +
Sbjct: 93 VGSALLGLSVGQHIDWPAPGGKQLKLTLLAVEY 125
>gi|306841739|ref|ZP_07474425.1| nucleoside diphosphate kinase regulator [Brucella sp. BO2]
gi|306288144|gb|EFM59531.1| nucleoside diphosphate kinase regulator [Brucella sp. BO2]
Length = 169
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL + RA+V+ + + + G+TV N G ++ +V EAD+ +SI +
Sbjct: 38 ELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILT 96
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155
PI ALIG G IS A G++ +L+V
Sbjct: 97 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 128
>gi|23500358|ref|NP_699798.1| nucleoside diphosphate kinase regulator [Brucella suis 1330]
gi|62317530|ref|YP_223383.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 1
str. 9-941]
gi|161620676|ref|YP_001594562.1| nucleoside diphosphate kinase regulator [Brucella canis ATCC 23365]
gi|225629104|ref|ZP_03787137.1| nucleoside diphosphate kinase regulator [Brucella ceti str. Cudo]
gi|254691027|ref|ZP_05154281.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 6
str. 870]
gi|254698811|ref|ZP_05160639.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 2
str. 86/8/59]
gi|254699850|ref|ZP_05161678.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 5 str.
513]
gi|254702988|ref|ZP_05164816.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 3 str.
686]
gi|254705890|ref|ZP_05167718.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
M163/99/10]
gi|254711118|ref|ZP_05172929.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
B2/94]
gi|254712423|ref|ZP_05174234.1| nucleoside diphosphate kinase regulator [Brucella ceti M644/93/1]
gi|254715495|ref|ZP_05177306.1| nucleoside diphosphate kinase regulator [Brucella ceti M13/05/1]
gi|254732258|ref|ZP_05190836.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 4
str. 292]
gi|256015391|ref|YP_003105400.1| nucleoside diphosphate kinase regulator [Brucella microti CCM 4915]
gi|256029499|ref|ZP_05443113.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
M292/94/1]
gi|256157694|ref|ZP_05455612.1| nucleoside diphosphate kinase regulator [Brucella ceti M490/95/1]
gi|256253334|ref|ZP_05458870.1| nucleoside diphosphate kinase regulator [Brucella ceti B1/94]
gi|256256212|ref|ZP_05461748.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 9
str. C68]
gi|260167410|ref|ZP_05754221.1| nucleoside diphosphate kinase regulator [Brucella sp. F5/99]
gi|260568099|ref|ZP_05838568.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
suis bv. 4 str. 40]
gi|260756623|ref|ZP_05868971.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 6
str. 870]
gi|260760053|ref|ZP_05872401.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 4
str. 292]
gi|260763292|ref|ZP_05875624.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 2
str. 86/8/59]
gi|260882440|ref|ZP_05894054.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 9
str. C68]
gi|261217230|ref|ZP_05931511.1| nucleoside diphosphate kinase regulator [Brucella ceti M13/05/1]
gi|261220450|ref|ZP_05934731.1| nucleoside diphosphate kinase regulator [Brucella ceti B1/94]
gi|261313320|ref|ZP_05952517.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
M163/99/10]
gi|261318709|ref|ZP_05957906.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
B2/94]
gi|261320101|ref|ZP_05959298.1| nucleoside diphosphate kinase regulator [Brucella ceti M644/93/1]
gi|261750323|ref|ZP_05994032.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 5 str.
513]
gi|261753597|ref|ZP_05997306.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 3 str.
686]
gi|261756820|ref|ZP_06000529.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
F5/99]
gi|265986507|ref|ZP_06099064.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
M292/94/1]
gi|265996199|ref|ZP_06108756.1| nucleoside diphosphate kinase regulator [Brucella ceti M490/95/1]
gi|294853589|ref|ZP_06794261.1| nucleoside diphosphate kinase regulator [Brucella sp. NVSL 07-0026]
gi|297249569|ref|ZP_06933270.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 5
str. B3196]
gi|23463975|gb|AAN33803.1| transcriptional regulator Rnk, putative [Brucella suis 1330]
gi|62197723|gb|AAX76022.1| hypothetical Rnk transcriptional regulator [Brucella abortus bv. 1
str. 9-941]
gi|161337487|gb|ABX63791.1| GreA/GreB family elongation factor [Brucella canis ATCC 23365]
gi|225615600|gb|EEH12649.1| nucleoside diphosphate kinase regulator [Brucella ceti str. Cudo]
gi|255998051|gb|ACU49738.1| nucleoside diphosphate kinase regulator [Brucella microti CCM 4915]
gi|260154764|gb|EEW89845.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
suis bv. 4 str. 40]
gi|260670371|gb|EEX57311.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 4
str. 292]
gi|260673713|gb|EEX60534.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 2
str. 86/8/59]
gi|260676731|gb|EEX63552.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 6
str. 870]
gi|260871968|gb|EEX79037.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 9
str. C68]
gi|260919034|gb|EEX85687.1| nucleoside diphosphate kinase regulator [Brucella ceti B1/94]
gi|260922319|gb|EEX88887.1| nucleoside diphosphate kinase regulator [Brucella ceti M13/05/1]
gi|261292791|gb|EEX96287.1| nucleoside diphosphate kinase regulator [Brucella ceti M644/93/1]
gi|261297932|gb|EEY01429.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
B2/94]
gi|261302346|gb|EEY05843.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
M163/99/10]
gi|261736804|gb|EEY24800.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
F5/99]
gi|261740076|gb|EEY28002.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 5 str.
513]
gi|261743350|gb|EEY31276.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 3 str.
686]
gi|262550496|gb|EEZ06657.1| nucleoside diphosphate kinase regulator [Brucella ceti M490/95/1]
gi|264658704|gb|EEZ28965.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
M292/94/1]
gi|294819244|gb|EFG36244.1| nucleoside diphosphate kinase regulator [Brucella sp. NVSL 07-0026]
gi|297173438|gb|EFH32802.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 5
str. B3196]
Length = 169
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL + RA+V+ + + + G+TV N G ++ +V EAD+ +SI +
Sbjct: 38 ELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILT 96
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155
PI ALIG G IS A G++ +L+V
Sbjct: 97 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 128
>gi|126174724|ref|YP_001050873.1| GreA/GreB family elongation factor [Shewanella baltica OS155]
gi|153001023|ref|YP_001366704.1| GreA/GreB family elongation factor [Shewanella baltica OS185]
gi|160875736|ref|YP_001555052.1| GreA/GreB family elongation factor [Shewanella baltica OS195]
gi|217973017|ref|YP_002357768.1| GreA/GreB family elongation factor [Shewanella baltica OS223]
gi|304409101|ref|ZP_07390722.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
gi|307303104|ref|ZP_07582859.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
gi|125997929|gb|ABN62004.1| GreA/GreB family elongation factor [Shewanella baltica OS155]
gi|151365641|gb|ABS08641.1| GreA/GreB family elongation factor [Shewanella baltica OS185]
gi|160861258|gb|ABX49792.1| GreA/GreB family elongation factor [Shewanella baltica OS195]
gi|217498152|gb|ACK46345.1| GreA/GreB family elongation factor [Shewanella baltica OS223]
gi|304352922|gb|EFM17319.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
gi|306913464|gb|EFN43886.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
gi|315267925|gb|ADT94778.1| GreA/GreB family elongation factor [Shewanella baltica OS678]
Length = 135
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE + RA+++ S M + + + V +S + ++V ++ + +G +SI +P
Sbjct: 34 LEAELDRADIVPASQMPANVVTMNSEVKFSVSSSNETFCLRLVYPKDVNG-AGTISILAP 92
Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+ AL+G GD I PGG I ++L+
Sbjct: 93 VGSALLGLSQGDEIEWPGPGGSMVKVRIEEILY 125
>gi|16262576|ref|NP_435369.1| hypothetical protein SMa0229 [Sinorhizobium meliloti 1021]
gi|14523189|gb|AAK64781.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
Length = 140
Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/110 (21%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 48 EYQAAKELQNLNEGR----MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK 103
+Y+ L R AEL + R V+ + D + G+ V+ E G +
Sbjct: 19 DYRLLSRLAYQALSRDFDIAAELIEKLERPCVLPDDQVPPDVVKIGSIVTC-EVEDGPCR 77
Query: 104 NYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
+ +V + D + G +S+ +P+ AL+G G + + G++ + I+
Sbjct: 78 TFSLVYPDDVDAEKGRISVLTPVGVALLGLRPGQAVEWFSRDGQRNHLIV 127
>gi|226312653|ref|YP_002772547.1| hypothetical protein BBR47_30660 [Brevibacillus brevis NBRC 100599]
gi|226095601|dbj|BAH44043.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 164
Score = 61.0 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 36/69 (52%)
Query: 89 GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148
G++V ++ + ++++ +V + D + +S SPI R L+ D + + +P G +
Sbjct: 87 GSSVKVLFEEDQFEESFTVVYPTDIDPDNNRISFLSPIGRQLLLAAPHDSVVLESPVGRQ 146
Query: 149 TYEILQVLW 157
++ ++ +
Sbjct: 147 QVQVREISF 155
>gi|218533328|ref|YP_002424143.1| GreA/GreB family elongation factor [Methylobacterium
chloromethanicum CM4]
gi|218525631|gb|ACK86215.1| GreA/GreB family elongation factor [Methylobacterium
chloromethanicum CM4]
Length = 147
Score = 61.0 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 1/96 (1%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+A L + RA V+ + + A V + + + + E D + +S+
Sbjct: 40 VAWLAEELDRATVVPPGAVPPRVVTMHARVEYRDDVTDQVRCVTLTYPGEEDAYASGISV 99
Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+P+ AL+G G I P GG + +L+V +
Sbjct: 100 LTPVGAALVGLSEGHSIRWRTPSGGLRGLTVLRVRF 135
>gi|258622671|ref|ZP_05717691.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM573]
gi|258585048|gb|EEW09777.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM573]
Length = 136
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
RA V++ M + + +TV S + +V + + VSI +P+ AL
Sbjct: 40 DRATVLEPEEMPENVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 98
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 99 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 126
>gi|254492419|ref|ZP_05105591.1| hypothetical protein MDMS009_2761 [Methylophaga thiooxidans DMS010]
gi|224462311|gb|EEF78588.1| hypothetical protein MDMS009_2761 [Methylophaga thiooxydans DMS010]
Length = 138
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
++A LE+ + RA V++ + + + +TV +S +V ++ +S
Sbjct: 32 KVATLEDELERANVVEPVAIPVNVVTMNSTVKFSVSSSQQTFCLTLVYPKDMTNDGKTIS 91
Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
I +P A++G GD I P G+ ++ ++L+
Sbjct: 92 ILAPAGSAMLGLLEGDEIEWPTPDGKPMKVKVEEILY 128
>gi|297581555|ref|ZP_06943478.1| transcription elongation factor GreB [Vibrio cholerae RC385]
gi|297534393|gb|EFH73231.1| transcription elongation factor GreB [Vibrio cholerae RC385]
Length = 47
Score = 60.6 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 31/47 (65%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
+ +T G++K++QEL + +E+RP I + +S A + GD SENA+
Sbjct: 1 MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENAD 47
>gi|238764586|ref|ZP_04625532.1| Regulator of nucleoside diphosphate kinase [Yersinia kristensenii
ATCC 33638]
gi|238697176|gb|EEP89947.1| Regulator of nucleoside diphosphate kinase [Yersinia kristensenii
ATCC 33638]
Length = 152
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 9/141 (6%)
Query: 18 ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVID 77
E+ +P I +A L + + LNE + RAE++
Sbjct: 10 EIELESGMTKPTITINELDAERLDALLAQPAFAGSVVATALNE--------ELDRAEILP 61
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+ + D + + V + NS ++ +V + +S+ +P+ AL+G + +
Sbjct: 62 PNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAPLGAALLGLHVNN 121
Query: 138 IISVNAPGGEK-TYEILQVLW 157
IS PGG++ +L++L+
Sbjct: 122 EISWKLPGGDEARIIVLELLY 142
>gi|258626677|ref|ZP_05721502.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM603]
gi|258581028|gb|EEW05952.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM603]
Length = 136
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
RA V++ M + + +TV S + +V + + VSI +P+ AL
Sbjct: 40 DRATVLEPEEMPENVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 98
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 99 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 126
>gi|171913830|ref|ZP_02929300.1| nucleoside diphosphate kinase regulator protein, putative
[Verrucomicrobium spinosum DSM 4136]
Length = 137
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 55/123 (44%), Gaps = 4/123 (3%)
Query: 37 ARAYGDLSENAEYQAAKELQNLNEGR-MAELENIITRAEVIDISTMSGDRIAFGATVSLV 95
A + DL + + N + R + L + A+V + + +A T+ V
Sbjct: 8 AISQSDLHTLRTFLDHDDAFNPLDARERSLLIERLQDAKVFEDESDDEPSVAGLQTLVRV 67
Query: 96 EKNSG---DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
E S D+ ++ +V EA+ + +SI SP+ A+ G+ G + +++P G + +
Sbjct: 68 EDLSTSPPDQFDFTLVLPHEANFEDDQISILSPLGAAVFGRSAGTQVVMDSPTGTRRLLV 127
Query: 153 LQV 155
L V
Sbjct: 128 LAV 130
>gi|271498857|ref|YP_003331882.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
gi|270342412|gb|ACZ75177.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
Length = 136
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
P + + +A L E + + Q L+E + RA+++ M D +
Sbjct: 4 PHLTISELDAERLDALLEQPAFADTEVAQALSE--------ELDRADIVQPVEMPADVVT 55
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ V + + ++ +V +S+ +P+ AL+G +G+ I+ P GE
Sbjct: 56 MNSRVRFRDLLTAEEHIRTLVYPASLKDSREQISVMAPLGAALLGMHVGNSIAWPLPNGE 115
Query: 148 KT-YEILQVLW 157
+T E++++L+
Sbjct: 116 ETRIEVMELLY 126
>gi|217969327|ref|YP_002354561.1| GreA/GreB family elongation factor [Thauera sp. MZ1T]
gi|217506654|gb|ACK53665.1| GreA/GreB family elongation factor [Thauera sp. MZ1T]
Length = 135
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + RA+V + M D I + VE+ +G + + ++A+ ++ VSI SP
Sbjct: 33 LRAELERADVREPQDMPADVITMNSRARFVEEGTGREYELTLAYPKDANAEAHRVSIFSP 92
Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
AL+G G I + G E ++L+V W
Sbjct: 93 AGSALLGLSAGQSIDWKSADGKEIRLKVLEVTW 125
>gi|86156938|ref|YP_463723.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-C]
gi|85773449|gb|ABC80286.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-C]
Length = 137
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
+ + + L+ + RA + + D + + V + +G + +V
Sbjct: 22 QHQEGRDAAAAERLDAELDRAVRVPDGQVPADVVTMNSRVVYEDGATGRLREITLVYPTA 81
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
AD++ G +S+ +P+ AL+G G IS P G E ++ V
Sbjct: 82 ADLREGRLSVLAPVGAALLGLSTGQSISWTLPDGREVELKVRSVQ 126
>gi|146300052|ref|YP_001194643.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae
UW101]
gi|146154470|gb|ABQ05324.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae
UW101]
Length = 143
Score = 60.6 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 38/78 (48%)
Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
+ D ++ V+ + N+ +K +VG ++ V +S+ S A++G ++GD+
Sbjct: 63 KNLPEDVVSVNRKVTYKDHNTNQEKTILLVGPEKVKVSKNKISVLSDEGIAMVGYKVGDL 122
Query: 139 ISVNAPGGEKTYEILQVL 156
I A G EIL+V
Sbjct: 123 IEWPAKKGHLKLEILKVE 140
>gi|262403647|ref|ZP_06080205.1| regulator of nucleoside diphosphate kinase [Vibrio sp. RC586]
gi|262350151|gb|EEY99286.1| regulator of nucleoside diphosphate kinase [Vibrio sp. RC586]
Length = 135
Score = 60.6 bits (146), Expect = 8e-08, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
RA V++ M + + +TV S + +V + + VSI +P+ AL
Sbjct: 39 DRATVLEPEDMPENVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 98 LGLAVGQQLAWPMPGGALKTLEIIDIVY 125
>gi|227877958|ref|ZP_03995963.1| possible transcription elongation factor GreA [Lactobacillus
crispatus JV-V01]
gi|227862461|gb|EEJ69975.1| possible transcription elongation factor GreA [Lactobacillus
crispatus JV-V01]
Length = 90
Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
MV +T +G+ +I+ E+ ++ +RPR IK + ARA GDLSEN EY AK +
Sbjct: 20 MVYFQKMTPEGYQQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQ 78
Query: 61 GRMAELENIITR 72
R+ L +
Sbjct: 79 SRLRYLGKQLKY 90
>gi|124267233|ref|YP_001021237.1| regulator of nucleoside diphosphate kinase [Methylibium
petroleiphilum PM1]
gi|124260008|gb|ABM95002.1| regulator of nucleoside diphosphate kinase [Methylibium
petroleiphilum PM1]
Length = 136
Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+E ++ V+ + D + + V L + SG + + +A+ +G VS+ SP
Sbjct: 34 IEPLLDACTVVPSRQVRPDVVTMYSQVLLQDLASGLRSRLTLCYPADAEPAAGFVSVLSP 93
Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+ +L+G +G + + P GE ++ E++ +L+
Sbjct: 94 VGCSLLGLTVGAVARWSTPSGEARSAEVVALLF 126
>gi|262369473|ref|ZP_06062801.1| transcription elongation factor GreB [Acinetobacter johnsonii
SH046]
gi|262315541|gb|EEY96580.1| transcription elongation factor GreB [Acinetobacter johnsonii
SH046]
Length = 50
Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ 50
+ +T G DK+ EL+ EERP I K ++ A + GD SENA+YQ
Sbjct: 1 MKSNLITRAGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQ 49
>gi|213582301|ref|ZP_03364127.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E98-0664]
Length = 62
Score = 60.2 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 30/44 (68%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSE 45
+ IP+T +G +K+++EL + + RP II AI+EAR +GDL
Sbjct: 1 MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKR 44
>gi|326315158|ref|YP_004232830.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323371994|gb|ADX44263.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 303
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ + ELE+ I RA V+D ++ D + + L + G+ +V Q+AD +G
Sbjct: 198 DPEIFELEHEIERATVVDPRQVAEDVVTMNSRALL--EVDGETVEVALVYPQDADEAAGR 255
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+ S + A++G GD + + +VL+
Sbjct: 256 HSVCSGLGTAILGYREGDAFRWRIADRTRRIRVRKVLY 293
>gi|307319085|ref|ZP_07598515.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
gi|306895192|gb|EFN25948.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
Length = 140
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 48 EYQAAKELQNLNEGR----MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK 103
+Y+ L R AEL + R V+ + D + G+ V+ E G +
Sbjct: 19 DYRLLSRLAYQALSRDFDIAAELIEKLERPCVLPDDQVPPDVVKIGSIVTC-EVEDGPCR 77
Query: 104 NYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148
+ +V + D + G +S+ +P+ AL+G G + + G++
Sbjct: 78 TFSLVYPDDVDAEKGRISVLTPVGVALLGLRPGQAVEWFSRDGQR 122
>gi|326318708|ref|YP_004236380.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323375544|gb|ADX47813.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae
ATCC 19860]
Length = 139
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLV----EKNSGDKKNYQIVGDQEADVQSGLVSIS 123
+++ A+V + D + + V L + G ++ + Q+AD +G VS+
Sbjct: 35 DLLATADVTGSRAVDADVVTMNSRVELEGSGTDGADGARQVLTLCYPQDADAAAGRVSVL 94
Query: 124 SPIARALIGKELGDIISVNAPGGE 147
SP+ +L+G +GD+ + P GE
Sbjct: 95 SPVGCSLLGLRVGDVAAWRTPQGE 118
>gi|120435083|ref|YP_860769.1| transcription elongation factor [Gramella forsetii KT0803]
gi|117577233|emb|CAL65702.1| transcription elongation factor [Gramella forsetii KT0803]
Length = 146
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 9/124 (7%)
Query: 43 LSENAEYQAAKELQNL--------NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94
+ E EY K++ +L + + +L + A ++ S M D I + V++
Sbjct: 7 IIEKKEYDFLKQIMSLAKYHKDTSYKASIYKLNEELKDARILTNSEMPLDVIRLNSLVTI 66
Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
E ++ YQIV ++ D++ +S+ +P+ AL G GD I+ P GE +I +
Sbjct: 67 -ETPYAVERTYQIVTPEKGDIRKNKISVLAPMGLALFGYAQGDNITWTFPLGESYIKIKE 125
Query: 155 VLWI 158
V I
Sbjct: 126 VKQI 129
>gi|306845947|ref|ZP_07478514.1| nucleoside diphosphate kinase regulator [Brucella sp. BO1]
gi|306273582|gb|EFM55427.1| nucleoside diphosphate kinase regulator [Brucella sp. BO1]
Length = 169
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL + RA+V+ + + + G+TV N G ++ +V EAD+ +SI +
Sbjct: 38 ELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILT 96
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155
PI ALIG G IS A G++ +L+V
Sbjct: 97 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 128
>gi|83269510|ref|YP_418801.1| nucleoside diphosphate kinase regulator [Brucella melitensis biovar
Abortus 2308]
gi|189022785|ref|YP_001932526.1| nucleoside diphosphate kinase regulator [Brucella abortus S19]
gi|237817078|ref|ZP_04596070.1| nucleoside diphosphate kinase regulator [Brucella abortus str. 2308
A]
gi|260544766|ref|ZP_05820587.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus NCTC 8038]
gi|82939784|emb|CAJ12792.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
melitensis biovar Abortus 2308]
gi|189021359|gb|ACD74080.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus S19]
gi|237787891|gb|EEP62107.1| nucleoside diphosphate kinase regulator [Brucella abortus str. 2308
A]
gi|260098037|gb|EEW81911.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
abortus NCTC 8038]
Length = 169
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 2/92 (2%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL + RA+V+ + + + G+TV N G ++ +V EAD+ +SI +
Sbjct: 38 ELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILT 96
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155
PI ALIG G IS A G++ +L+V
Sbjct: 97 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 128
>gi|262164195|ref|ZP_06031933.1| regulator of nucleoside diphosphate kinase [Vibrio mimicus VM223]
gi|262026575|gb|EEY45242.1| regulator of nucleoside diphosphate kinase [Vibrio mimicus VM223]
Length = 136
Score = 60.2 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
RA V++ M + + +TV S + +V + + VSI +P+ AL
Sbjct: 40 DRATVLEPEEMPENVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 98
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G ++ PGG KT EI+ +++
Sbjct: 99 LGLAVGQQLAWPMPGGALKTLEIIDIVY 126
>gi|213622210|ref|ZP_03374993.1| transcription elongation factor GreA [Salmonella enterica subsp.
enterica serovar Typhi str. E98-2068]
Length = 42
Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
L+S++SPIAR LIGKE D++ + PGG+ YE+L+V ++
Sbjct: 1 QNLISVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 42
>gi|104784263|ref|YP_610761.1| nucleoside diphosphate kinase regulator [Pseudomonas entomophila
L48]
gi|95113250|emb|CAK17978.1| regulator of nucleoside diphosphate kinase [Pseudomonas entomophila
L48]
Length = 136
Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+V+ + + + V E SG + +V ++A + G VSI +PI AL+G
Sbjct: 43 QVVGHEEVPAGVVTMNSRVHCREIASGKDYHLTLVYPKDAGPE-GNVSILAPIGCALLGL 101
Query: 134 ELGDIISVNAPGGE-KTYEILQVLW 157
+GD I APGG+ E+L V +
Sbjct: 102 SVGDQIDWPAPGGKTLKLELLAVEY 126
>gi|24373499|ref|NP_717542.1| regulator of nucleoside diphosphate kinase [Shewanella oneidensis
MR-1]
gi|24347802|gb|AAN54986.1|AE015637_2 regulator of nucleoside diphosphate kinase [Shewanella oneidensis
MR-1]
Length = 135
Score = 60.2 bits (145), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
A LE + RA+++ + M + + + V +S D ++V ++A G +SI
Sbjct: 31 RAALEAELDRADIVPAAQMPANVVTMNSEVKFRVSSSNDTFCLRLVYPKDA-TGEGTISI 89
Query: 123 SSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+P+ AL+G GD I PGG I ++++
Sbjct: 90 LAPVGSALLGLSQGDQIEWPGPGGTMVKVCIEEIVY 125
>gi|293606854|ref|ZP_06689202.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
gi|292814706|gb|EFF73839.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
43553]
Length = 140
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ + ++ A +I I ++ D I + V L+ + GD+ + +A++ G VS+
Sbjct: 36 IDAAQELLDSAPIIPIEEVTPDIITMRSRVRLLN-DKGDEMVVTLCYPADANLAQGQVSV 94
Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
SP+ +LIG G +++ AP E + I ++L+
Sbjct: 95 MSPLGLSLIGSRTGQLVTWTAPNQTEHSASIEEILY 130
>gi|262375495|ref|ZP_06068728.1| predicted protein [Acinetobacter lwoffii SH145]
gi|262309749|gb|EEY90879.1| predicted protein [Acinetobacter lwoffii SH145]
Length = 134
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
E Q+ M LE+ + RAEV++ ++ + + + V L S + +V E
Sbjct: 21 ENQSKLSETMIRLEDELARAEVVEPQAIASNIVTMHSRVLLTIAPSTEAVEVTLVYPHEF 80
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
+ G V++ +PI A++G G I P G I +VL+
Sbjct: 81 KGEKGQVNVIAPIGAAILGLAEGQTIEWPQPDGNTMKVTIEKVLF 125
>gi|84394549|ref|ZP_00993255.1| transcription elongation factor GreA [Vibrio splendidus 12B01]
gi|84374818|gb|EAP91759.1| transcription elongation factor GreA [Vibrio splendidus 12B01]
Length = 51
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK 53
++K+P+T +G K++ EL + RP I AI EAR GDL ENAEY AA+
Sbjct: 1 MEKVPMTVRGAQKLRDELDRLLK-LRPIISAAIGEARELGDLKENAEYHAAR 51
>gi|307300675|ref|ZP_07580450.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
gi|306904209|gb|EFN34794.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
Length = 140
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AEL + R V+ + D + G+ V+ E G + + +V + D + G +S+
Sbjct: 39 AELIEKLERPCVLPDDQVPPDVVKIGSIVTC-EVEDGPCRTFSLVYPDDVDAEKGRISVL 97
Query: 124 SPIARALIGKELGDIISVNAPGGEK 148
+P+ AL+G G + + G++
Sbjct: 98 TPVGVALLGLRPGQAVEWFSRDGQR 122
>gi|117920161|ref|YP_869353.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3]
gi|117612493|gb|ABK47947.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3]
Length = 135
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
A LE + RA+++ + M G+ + + V +S D ++V ++A G +SI
Sbjct: 31 RAALEAELDRADIVPAAQMPGNVVTMNSEVRFSVSSSQDTFCLRLVYPKDA-AGEGTISI 89
Query: 123 SSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
+P+ AL+G GD I PGG I ++++
Sbjct: 90 LAPVGSALLGLSQGDEIEWPGPGGSMVKVRIEEIVY 125
>gi|332995744|gb|AEF05799.1| transcription elongation factor GreB [Alteromonas sp. SN2]
Length = 56
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ 50
+T KG+ K++QEL + ERP + ++ A + GD SENA++
Sbjct: 6 ITRKGYLKLKQELDHLWRVERPETTRKVTWAASLGDRSENADFH 49
>gi|325271635|ref|ZP_08138137.1| nucleoside diphosphate kinase regulator [Pseudomonas sp. TJI-51]
gi|324103239|gb|EGC00584.1| nucleoside diphosphate kinase regulator [Pseudomonas sp. TJI-51]
Length = 136
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
E + A+V+ + + + V E+ SG + +V ++A + G VS+ +PI
Sbjct: 36 EELDRAAQVVGHEEVPAGVVTMNSRVHCREEASGKDYHLTLVYPKDAGAE-GKVSVLAPI 94
Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
AL+G +G+ I APGG+ ++L+V +
Sbjct: 95 GCALLGLSVGEQIDWPAPGGKTLKLKLLEVEY 126
>gi|292493343|ref|YP_003528782.1| transcription elongation factor [Nitrosococcus halophilus Nc4]
gi|291581938|gb|ADE16395.1| transcription elongation factor [Nitrosococcus halophilus Nc4]
Length = 129
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ I A V+ + +S + + + V ++ +G ++ ++V +EA+ +G +S+ +PI
Sbjct: 28 HKIDYAIVVPVGHISSNIVTMHSRVIYLDGKTGIRREVELVYPKEANSDTGKISVLAPIG 87
Query: 128 RALIGKELGDIISVNAPGGE-KTYEILQVLW 157
AL+G +G P GE ++ + ++L+
Sbjct: 88 SALLGLSVGQATDWVFPSGEVRSLRVERILF 118
>gi|329847121|ref|ZP_08262149.1| regulator of nucleoside diphosphate kinase [Asticcacaulis
biprosthecum C19]
gi|328842184|gb|EGF91753.1| regulator of nucleoside diphosphate kinase [Asticcacaulis
biprosthecum C19]
Length = 142
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L + RA V+ ++ + G+ VS G ++ Q+V EAD+ +G +SI
Sbjct: 43 QYLRRELDRAAVVATMKLNPAVVRLGSVVSYA-AGKGAERTVQLVLPGEADISTGCISIL 101
Query: 124 SPIARALIGKELGDIISVNAPGGEKT-YEILQV 155
+P+ ALIG G I+ G + E+ +V
Sbjct: 102 TPVGAALIGLRAGQSITFTTAQGRQQSLEVFRV 134
>gi|218461137|ref|ZP_03501228.1| hypothetical protein RetlK5_17212 [Rhizobium etli Kim 5]
Length = 44
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/44 (75%), Positives = 41/44 (93%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS 44
MV+K+P+T GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLS
Sbjct: 1 MVEKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLS 44
>gi|94498026|ref|ZP_01304589.1| nucleoside diphosphate kinase regulator [Sphingomonas sp. SKA58]
gi|94422461|gb|EAT07499.1| nucleoside diphosphate kinase regulator [Sphingomonas sp. SKA58]
Length = 156
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 36 EARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLV 95
EA G + E+A + +EL+ + A+ GD +AFG V+
Sbjct: 45 EAVDSGPMDEDAAKKHKRELRYW--------RTRLATAQ--QQPAPDGDVVAFGTRVTYR 94
Query: 96 EKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQ 154
SG K+ +VGD EAD G +S SSP+ARA++ E+G+ + G+ EI+
Sbjct: 95 --QSGQDKSVVLVGDDEADPHDGRISFSSPVARAMMDAEVGEKVDF---AGKADAIEIIG 149
Query: 155 VL 156
+
Sbjct: 150 IE 151
>gi|167036270|ref|YP_001671501.1| nucleoside diphosphate kinase regulator [Pseudomonas putida GB-1]
gi|166862758|gb|ABZ01166.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1]
Length = 136
Score = 59.8 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
+V+ + + + V E+ SG + +V ++A + G VSI +PI AL
Sbjct: 40 RAGQVVGHEEVPAGVVTMNSRVHCREEASGKDYHLTLVYPKDAGPE-GKVSILAPIGCAL 98
Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
+G +G+ I APGG+ ++L+V +
Sbjct: 99 LGLSVGEQIDWPAPGGKTLKLKLLEVEY 126
>gi|220915658|ref|YP_002490962.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-1]
gi|219953512|gb|ACL63896.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
2CP-1]
Length = 138
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/105 (21%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
+ + + L+ + RA + + D +A + V + +G + +V
Sbjct: 22 QHQEGRDAAAAERLDAELDRAVRVPDGQVPPDVVAMNSRVVYEDGATGRLREVTLVYPTA 81
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
AD++ G +S+ +P+ AL+G G IS P G E + V
Sbjct: 82 ADLREGRLSVLAPVGAALLGLSTGQSISWTLPDGREVELRVRSVQ 126
>gi|299140367|ref|ZP_07033528.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
gi|299140416|ref|ZP_07033572.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
gi|298597600|gb|EFI53782.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
gi|298597642|gb|EFI53819.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
Length = 70
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
G E D+ VS SP+ RAL+ GD + + APGG+++ +L+V +
Sbjct: 1 GADEVDLDRNHVSWVSPLGRALMRSAEGDSVVLEAPGGKESLTVLEVRY 49
>gi|153011001|ref|YP_001372215.1| nucleoside diphosphate kinase regulator [Ochrobactrum anthropi ATCC
49188]
gi|151562889|gb|ABS16386.1| GreA/GreB family elongation factor [Ochrobactrum anthropi ATCC
49188]
Length = 142
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA+V+ + + I G+TV N G ++ +V EAD+ G +SI +PI A
Sbjct: 43 LDRAKVVPAKRLPQNVIHMGSTVEFR-SNDGQERRVTLVYPGEADIAQGKISILTPIGTA 101
Query: 130 LIGKELGDIISVNAPGGEK-TYEILQVL 156
LIG G IS A G++ +L V
Sbjct: 102 LIGLAPGQSISWTARDGKQHELNVLSVS 129
>gi|301049802|ref|ZP_07196743.1| regulator of nucleoside diphosphate kinase domain protein
[Escherichia coli MS 185-1]
gi|300298434|gb|EFJ54819.1| regulator of nucleoside diphosphate kinase domain protein
[Escherichia coli MS 185-1]
Length = 81
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
+ V + G+ + +V + + +S+ +P+ AL+G +GD I PGG
Sbjct: 1 MNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGV 60
Query: 148 KT-YEILQVLW 157
T E+L++ +
Sbjct: 61 ATHLEVLELEY 71
>gi|163844766|ref|YP_001622421.1| nucleoside diphosphate kinase regulator [Brucella suis ATCC 23445]
gi|163675489|gb|ABY39599.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 169
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL + RA+V+ + + + G+TV N G ++ +V EAD+ +S +
Sbjct: 38 ELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISTLT 96
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155
PI ALIG G IS A G++ +L+V
Sbjct: 97 PIGTALIGLAPGQSISWTARDGKQHELNVLKV 128
>gi|326388482|ref|ZP_08210077.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
DSM 19370]
gi|326207030|gb|EGD57852.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
DSM 19370]
Length = 164
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDI-STMSGDRI 86
P ++ A A ++E ++ + +L +TR + G +
Sbjct: 35 PNLVTARGLALIGAKVAELESRLLTLTEEDAIKAARRDLRYWLTRQATAQPVARPDGSHV 94
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
AFG TV+ +G + IVGD EAD +GL+S S+P++RA++ E+G+++ + G
Sbjct: 95 AFGCTVTFR--MNGKTRTVTIVGDDEADPAAGLLSFSAPLSRAMMDAEVGELVDFS--GK 150
Query: 147 EKTYEILQVL 156
+ EI+ +
Sbjct: 151 PEAIEIVAIE 160
>gi|197120960|ref|YP_002132911.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
gi|196170809|gb|ACG71782.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
Length = 138
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA + + D +A + V + +G + +V AD++ G +S+ +P+ A
Sbjct: 39 LDRAVRVPDGQVPADVVAMNSRVVYEDGATGRLREVTLVYPTAADLREGRLSVLAPVGAA 98
Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVL 156
L+G G IS P G E + V
Sbjct: 99 LLGLSTGQSISWTLPDGREVELRVRSVQ 126
>gi|153004547|ref|YP_001378872.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
gi|152028120|gb|ABS25888.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
Length = 138
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 60 EGRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
+ R AE L+ + RA I+++ D + A V+ V+ SG ++ +V ++ADV +G
Sbjct: 29 DARAAEQLDAELDRAVPIEVAP--PDLVTMNARVAFVDLASGVRRELVLVYPRDADVAAG 86
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQ 154
VS+ +PI AL+G +G+ I P G IL
Sbjct: 87 RVSVLAPIGAALLGLSVGEEIDWPLPDGRVARLRILS 123
>gi|87198849|ref|YP_496106.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
gi|87134530|gb|ABD25272.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
DSM 12444]
Length = 159
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L I RA+++ + D +A + V ++ +G + +V EAD+ VSI
Sbjct: 59 RMLMEEIGRAQIVPAQDLPPDAVAMRSVVRFRDEATGAVRTVTLVYPAEADIAQDRVSIL 118
Query: 124 SPIARALIGKELGDIISV-NAPGGEKTYEILQVL 156
+P+ LIG G I N G ++ I QV+
Sbjct: 119 TPVGAGLIGLRAGQSIDWPNVRGKQRAITIEQVI 152
>gi|84386369|ref|ZP_00989397.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
gi|84378793|gb|EAP95648.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
Length = 56
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
+ +T +G++K++ E E+RP I K ++ A + GD SENA+
Sbjct: 1 MKTKLITREGYNKLKAEHDHLWHEKRPEITKIVTWAASLGDRSENAD 47
>gi|149369863|ref|ZP_01889714.1| transcription elongation factor [unidentified eubacterium SCB49]
gi|149356354|gb|EDM44910.1| transcription elongation factor [unidentified eubacterium SCB49]
Length = 139
Score = 59.1 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
Query: 43 LSENAEYQAAKELQNLNEGRMAELE---------NIITRAEVIDISTMSGDRIAFGATVS 93
+ E EY K + N G A+ E + A ++D M D I F +
Sbjct: 7 IIEKKEYVFLKRILN-ISGYAADFEIQKSFKRLNEELKTAIIVDEEEMPTDVIRFNSQ-V 64
Query: 94 LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
L+ +G KK +QIV DV++ +SI + + AL G GD + P G+ I
Sbjct: 65 LISTKNGWKKEFQIVSPALKDVKADKISILTVMGAALFGYAQGDTVEWEFPTGKNLITIE 124
Query: 154 QV 155
+V
Sbjct: 125 KV 126
>gi|320326558|gb|EFW82609.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
glycinea str. B076]
gi|320331376|gb|EFW87317.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330881316|gb|EGH15465.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 144
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 56 QNLNEGRMAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
Q+ N + L+ + RA +V+ + + + V E+ SG + ++V Q+A
Sbjct: 33 QDENTPGIQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 92
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
G VS+ +P+ AL+G +G I APGG+ +L V +
Sbjct: 93 AD-GTVSVLAPMGSALLGLHVGQHIDWPAPGGKTLKLTLLAVEY 135
>gi|26991899|ref|NP_747324.1| nucleoside diphosphate kinase regulator [Pseudomonas putida KT2440]
gi|148550332|ref|YP_001270434.1| nucleoside diphosphate kinase regulator [Pseudomonas putida F1]
gi|24987021|gb|AAN70788.1|AE016722_9 nucleoside diphosphate kinase regulator [Pseudomonas putida KT2440]
gi|148514390|gb|ABQ81250.1| GreA/GreB family elongation factor [Pseudomonas putida F1]
gi|313501200|gb|ADR62566.1| Rnk [Pseudomonas putida BIRD-1]
Length = 136
Score = 58.7 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+V+ + + + V E+ SG + +V ++A + G VSI +PI AL+G
Sbjct: 43 QVVGHEEVPAGVVTMNSRVHCREEASGKDYHLTLVYPKDAGPE-GKVSILAPIGCALLGL 101
Query: 134 ELGDIISVNAPGGE-KTYEILQVLW 157
+G+ I APGG+ ++L+V +
Sbjct: 102 SVGEQIDWPAPGGKTLKLKLLEVEY 126
>gi|290958510|ref|YP_003489692.1| hypothetical protein SCAB_40691 [Streptomyces scabiei 87.22]
gi|260648036|emb|CBG71144.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 1845
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 66/153 (43%), Gaps = 11/153 (7%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++ ++Q+EL+ Q + + + E A S A+ + + R + L
Sbjct: 1701 LSVAAHRRVQRELQRVQD----ALDQPLPEIVAVDSSSRKAQLADHDRRRQALQERRSHL 1756
Query: 67 ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
++ +V+ S+++G + G V + + + Y+I A ++ +S +P
Sbjct: 1757 RAVLD--QVVPDSSLTGGAMVVPGCLVGVEDPDEPGIMTYEIAM--LAGDEAERLSPDTP 1812
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
+AL+ +E+GD +S G + I V +I
Sbjct: 1813 QGKALMWREVGDEVSWQTERGTRMRVI--VRYI 1843
>gi|56459737|ref|YP_155018.1| GreA/GreB family transcription elongation factor [Idiomarina
loihiensis L2TR]
gi|56178747|gb|AAV81469.1| Transcription elongation factor greA/greB family [Idiomarina
loihiensis L2TR]
Length = 151
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 9/101 (8%)
Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
++ R+ E+ E RI GA+ L + ++ ++V + AD
Sbjct: 50 ELSILLNRLEFSESKEALIE---------KRIRVGASAVLRNVKTMEQVKVRLVPPELAD 100
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ LVS SP+ L+G +GDI +V +E+L V
Sbjct: 101 TDNYLVSFISPLGSTLLGLRVGDIATVIVKDISIKWEVLTV 141
>gi|120608986|ref|YP_968664.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1]
gi|120587450|gb|ABM30890.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1]
Length = 303
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 2/98 (2%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
+ + ELE+ I RA V+D ++ D + + L + + +V Q+AD +G
Sbjct: 198 DPEIFELEHEIERATVVDPRQVAEDVVTMNSRALL--EVDNETVEVALVYPQDADEAAGR 255
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S+ S + A++G GD + + +VL+
Sbjct: 256 HSVCSGLGTAILGYREGDAFRWRIADRTRRIRVRKVLY 293
>gi|262369571|ref|ZP_06062899.1| GreA/GreB family elongation factor [Acinetobacter johnsonii SH046]
gi|262315639|gb|EEY96678.1| GreA/GreB family elongation factor [Acinetobacter johnsonii SH046]
Length = 134
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
E Q M LE + RA+V+ M + + A V L S + +V +
Sbjct: 21 EHQPKLTPTMQLLEEELARADVVAPQDMPANVVTMNAKVLLTIAPSTEASEITLVYPHDF 80
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+ G V++ +PI A++G G I P G+ +I +V++
Sbjct: 81 KGEKGQVNVVAPIGAAILGLAEGQEIEWPQPDGQMMKVKIEKVVY 125
>gi|134100846|ref|YP_001106507.1| nucleoside diphosphate kinase regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|291008641|ref|ZP_06566614.1| nucleoside diphosphate kinase regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|133913469|emb|CAM03582.1| nucleoside diphosphate kinase regulator [Saccharopolyspora
erythraea NRRL 2338]
Length = 162
Score = 58.7 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 63/151 (41%), Gaps = 7/151 (4%)
Query: 9 SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELEN 68
+ ++++E R + + R + + +S+ GD +++ + + R+A LE
Sbjct: 10 PEARARLEEEARSLRAQRR-HLAEELSQRDPVGDRGDDSLALEGADELAWYDDRIAALER 68
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG---DQEADVQSGLVSISSP 125
+T + + + G V + ++ G + ++VG + + ++ SP
Sbjct: 69 RLTGR--GRRAGQGAEGLPPGTEVRVRFED-GTVQELRVVGIPEEVPEGEEDQTMTSDSP 125
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+A AL G G ++ + P G +L V
Sbjct: 126 LALALAGGSAGTDVTYSTPDGPARVHLLDVR 156
>gi|319780959|ref|YP_004140435.1| transcription elongation factor GreA/GreB domain-containing protein
[Mesorhizobium ciceri biovar biserrulae WSM1271]
gi|317166847|gb|ADV10385.1| transcription elongation factor GreA/GreB domain-containing protein
[Mesorhizobium ciceri biovar biserrulae WSM1271]
Length = 140
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL + + RA V ++M + + G+ V++ + G+ + +V EAD+ +S+ +
Sbjct: 40 ELLSEMDRAVVTAAASMPANVVRMGSAVTIRN-DGGNIQRVTLVYPGEADISENRISVLT 98
Query: 125 PIARALIGKELGDIISVNAPGGEK---TYEILQ 154
P+ ALIG G + ++ GG + T E++
Sbjct: 99 PMGTALIGATAGQTVCWSSRGGRELSATIEVVD 131
>gi|163757146|ref|ZP_02164248.1| transcription elongation factor [Kordia algicida OT-1]
gi|161322874|gb|EDP94221.1| transcription elongation factor [Kordia algicida OT-1]
Length = 139
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 9/122 (7%)
Query: 43 LSENAEYQAAKELQN--------LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94
+ E EY K + N + + +L + A ++D S M D I F + VS+
Sbjct: 7 ILEKKEYVYLKRILNISGYTGDFEVQNSLLQLNKELKNALIVDESEMPNDIIRFNSIVSI 66
Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+ KK QIV E D++ +SI +P+ +LIG+ D I + GE+ I
Sbjct: 67 S-AENNWKKTLQIVIPTEVDIEKNKISILTPLGASLIGRSSNDNIQCTSNSGEQKIIIES 125
Query: 155 VL 156
V
Sbjct: 126 VR 127
>gi|89068497|ref|ZP_01155894.1| putative nucleoside diphosphate kinase regulator [Oceanicola
granulosus HTCC2516]
gi|89045916|gb|EAR51976.1| putative nucleoside diphosphate kinase regulator [Oceanicola
granulosus HTCC2516]
Length = 150
Score = 58.3 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
RP+++ L+E A + R+ + RA ++ + + +
Sbjct: 17 RRPKVVICSDTLDRLESLAE-----GALQRNPDLADRLL---GELGRARIVPPARLPANV 68
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+A G V+ ++ +G K+ V ++AD+ G +S+ +PI ALIG G I
Sbjct: 69 VAIGRAVTYRDETTGLAKSVVPVFPEDADIARGRISVLTPIGVALIGLAEGAAIPWETRD 128
Query: 146 GEKTYEILQVL 156
G + +L VL
Sbjct: 129 GSRR--VLSVL 137
>gi|262198442|ref|YP_003269651.1| GreA/GreB family elongation factor [Haliangium ochraceum DSM 14365]
gi|262081789|gb|ACY17758.1| GreA/GreB family elongation factor [Haliangium ochraceum DSM 14365]
Length = 163
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 60/159 (37%), Gaps = 18/159 (11%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSE-------NAEYQAAKELQNLNEGRMAE 65
D+++ E+ R A EA+ +E + EY Q+ GR +
Sbjct: 8 DQLRAEIHKSAHVARSAARDAAQEAKHGASSNEKRQDARVHQEYSNLARAQH---GRAEK 64
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQE------ADVQS 117
+ + + S R + VE G+ + + VG D
Sbjct: 65 AARELDALDAFEAKAYSSKRPIGLGALVEVEDERGEGRTLFLAPVGAGVTLTGPGGDGFL 124
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+V+ +SPI RAL+G+ LG+I+ V G K + I V
Sbjct: 125 SVVTPASPIGRALLGRRLGEIVDVTVRGEPKEWTITYVE 163
>gi|270598461|ref|ZP_06221523.1| transcription elongation factor greB [Haemophilus influenzae
HK1212]
gi|270318308|gb|EFA29477.1| transcription elongation factor greB [Haemophilus influenzae
HK1212]
Length = 50
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+SI SP+ARALIGK L D + V P G T I ++ +
Sbjct: 4 KNWISIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 44
>gi|88797807|ref|ZP_01113395.1| nucleoside diphosphate kinase regulator [Reinekea sp. MED297]
gi|88779484|gb|EAR10671.1| nucleoside diphosphate kinase regulator [Reinekea sp. MED297]
Length = 142
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ LE+ + RA V + + D + G+ V +SG ++V ++ +S+
Sbjct: 31 IDWLESELDRATVCLPNELPADAVQLGSVVRFQLSSSGQVYLRELVLPEQR-QHDEHISV 89
Query: 123 SSPIARALIGKELGDIISV-NAPGGEKTYEILQVL 156
SP+ AL+G +GD I+ ++PG T IL V
Sbjct: 90 LSPVGMALLGLRVGDEIAWPSSPGQSTTVRILDVK 124
>gi|330503391|ref|YP_004380260.1| acetyltransferase [Pseudomonas mendocina NK-01]
gi|328917677|gb|AEB58508.1| acetyltransferase [Pseudomonas mendocina NK-01]
Length = 306
Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
ELE+ + RA V+ ++ + + + L ++ +V ++AD +G S+ S
Sbjct: 206 ELEHELERAIVVKPEQVARNVVTMNSRALLQ--LDDEEIEVALVYPEDADGSAGKHSVCS 263
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
I A++G + GD I + EI +VL+
Sbjct: 264 DIGAAILGYQEGDAIDWRISDRTRRIEIRKVLY 296
>gi|300023786|ref|YP_003756397.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525607|gb|ADJ24076.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans
ATCC 51888]
Length = 164
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 2/94 (2%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
ELE + RAEV+ +++ + + + V +S ++ ++V EAD+ +S+
Sbjct: 39 QELEIEMGRAEVVQAASVPANVVRMDSIVEFR-TDSAQQRRVKLVFPGEADISQDKISVL 97
Query: 124 SPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
+PI ALIG G I+ A G++ T ++ V
Sbjct: 98 TPIGVALIGLAAGQSITWTARDGKQHTLTVIAVE 131
>gi|255531734|ref|YP_003092106.1| transcription elongation factor [Pedobacter heparinus DSM 2366]
gi|255344718|gb|ACU04044.1| Transcription elongation factor [Pedobacter heparinus DSM 2366]
Length = 125
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+LE + A I + D + V + E +G + NY +V +A + +SI S
Sbjct: 31 KLEQELRNARQILSKDIPADVVTVNTRVRVKELETGAEFNYTLVPPAKARNKHNTLSILS 90
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
PI A++G G + P G K Y I +V
Sbjct: 91 PIGVAMVGYSQGSELKWEMPEGIKAYRIEEVT 122
>gi|126666022|ref|ZP_01737002.1| regulator of nucleoside diphosphate kinase [Marinobacter sp. ELB17]
gi|126629344|gb|EAZ99961.1| regulator of nucleoside diphosphate kinase [Marinobacter sp. ELB17]
Length = 127
Score = 57.9 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
E Q E A E ++R+ ++ ++ + + V +++S + +V E
Sbjct: 21 IEKQGNLETAAALDEE-LSRSTLVPLADIPDTVVTMNTAVRFQDEDSKKEHQLTLVYPHE 79
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
G +SI +P AL+G +G+ I G + +I+ V
Sbjct: 80 MGDGEGKISILAPAGSALLGLSVGESIKWPVRGRKNLHLKIISVQ 124
>gi|153006096|ref|YP_001380421.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
gi|152029669|gb|ABS27437.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
Length = 164
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 28/158 (17%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGD-LSENAEYQAAKELQNLNE 60
D++ +T + +++ L +A E+ A D ENA A L++
Sbjct: 23 TDRLLLTEQDAARLRATL-----------ARASLESMASADARGENAVELLATALRSAI- 70
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
V+ + + + + + L + SG ++ +V +E G V
Sbjct: 71 --------------VVPPDRIPAEVVTMRSRLVLEDVASGARREVVLVYPEEERTHEGHV 116
Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
S+ SP+ AL+G G ++ P G ++ V +
Sbjct: 117 SVLSPVGVALLGLSEGALVGWPLPSGRTAVLQVESVQY 154
>gi|188575425|ref|YP_001912354.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
oryzae PXO99A]
gi|188519877|gb|ACD57822.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
oryzae PXO99A]
Length = 215
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G + V EADVQ G + + +P+
Sbjct: 115 DELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAPVG 174
Query: 128 RALIGKELGDIISVNAPGG 146
AL G +G I P G
Sbjct: 175 SALGGLSVGQRIDWRTPDG 193
>gi|122879281|ref|YP_202287.6| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
oryzae KACC10331]
Length = 143
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G + V EADVQ G + + +P+
Sbjct: 43 DELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAPVG 102
Query: 128 RALIGKELGDIISVNAPGG 146
AL G +G I P G
Sbjct: 103 SALGGLSVGQRIDWRTPDG 121
>gi|58427865|gb|AAW76902.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
oryzae KACC10331]
Length = 252
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G + V EADVQ G + + +P+
Sbjct: 152 DELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAPVG 211
Query: 128 RALIGKELGDIISVNAPGG 146
AL G +G I P G
Sbjct: 212 SALGGLSVGQRIDWRTPDG 230
>gi|84625107|ref|YP_452479.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
oryzae MAFF 311018]
gi|84369047|dbj|BAE70205.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
oryzae MAFF 311018]
Length = 143
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V+ + GD + + + ++ G + V EADVQ G + + +P+
Sbjct: 43 DELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAPVG 102
Query: 128 RALIGKELGDIISVNAPGG 146
AL G +G I P G
Sbjct: 103 SALGGLSVGQRIDWRTPDG 121
>gi|325168694|ref|YP_004280484.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3]
gi|325064417|gb|ADY68106.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3]
Length = 137
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA+V++ D +A G+TVS + G ++ + AD++ +VS+ +PI A
Sbjct: 43 LERADVVEDDQFPADAVAVGSTVSYL-TEGGARRTVTLCYPGLADIERSMVSVLTPIGAA 101
Query: 130 LIGKELGDIISVNAPGG-EKTYEILQV 155
L+G G I G +L+V
Sbjct: 102 LLGLSPGQQIEWKGRDGHSHKLTVLEV 128
>gi|296164628|ref|ZP_06847195.1| transcription elongation factor GreA [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295900047|gb|EFG79486.1| transcription elongation factor GreA [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 205
Score = 57.9 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 20/147 (13%), Positives = 50/147 (34%), Gaps = 19/147 (12%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
V ++ + + ++Q+EL ++ ++A Y D A + + +L
Sbjct: 4 VQATWLSPQAYGRLQRELAALREP-------CDADADEYCDAVRRARRLRIQRIHDLL-- 54
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
V+ G +++ ++ + + + + + S
Sbjct: 55 ----------VNAVVGQDPPDDGIAEPGMVLTVRYDDTNEVETFLLGARGAEHCGVEVYS 104
Query: 122 ISSPIARALIGKELGDIISVNAPGGEK 148
+ SP+ A+ G G+ S P G +
Sbjct: 105 VHSPLGSAIAGARPGERRSYVPPSGVR 131
>gi|239833979|ref|ZP_04682307.1| nucleoside diphosphate kinase regulator [Ochrobactrum intermedium
LMG 3301]
gi|239822042|gb|EEQ93611.1| nucleoside diphosphate kinase regulator [Ochrobactrum intermedium
LMG 3301]
Length = 142
Score = 57.5 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 58 LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
E EL + RA+V+ + D I G+TV N G ++ +V EAD+
Sbjct: 31 RLEEIAEELMAELDRAKVVPAKRLPQDVIHMGSTVEFR-SNDGQQRRVALVYPGEADIAQ 89
Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
G +SI +PI ALIG G IS A G++ +L V
Sbjct: 90 GKISILTPIGTALIGLAPGQSISWTARDGKQHELNVLSVS 129
>gi|91223443|ref|ZP_01258708.1| hypothetical protein V12G01_22293 [Vibrio alginolyticus 12G01]
gi|91191529|gb|EAS77793.1| hypothetical protein V12G01_22293 [Vibrio alginolyticus 12G01]
Length = 159
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 55/147 (37%), Gaps = 12/147 (8%)
Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAEV 75
L + Q +AI A + E+ A E L G R+ + E + +
Sbjct: 14 LEEKLQVAHSSAQRAIDAATDEETVPEHKYDTLALEAAYLAHGQAMRIQDSEEELRQYRS 73
Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS-------SPIAR 128
+ + GA V L ++N +K + VG + ++ SP+ R
Sbjct: 74 LVTRNFKNAPVGVGAYVVLADENLIEKHFF--VGPCSGGLTVQYQTLEVFVLTAKSPLGR 131
Query: 129 ALIGKELGDIISVNAPGGEKTYEILQV 155
AL GKE GD + V YE++ +
Sbjct: 132 ALFGKEEGDEVDVKIGDKTTCYEVVTI 158
>gi|71736881|ref|YP_277097.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71557434|gb|AAZ36645.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
pv. phaseolicola 1448A]
Length = 135
Score = 57.5 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 56 QNLNEGRMAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
Q+ N + L+ + RA +V+ + + + V E+ SG + ++V Q+A
Sbjct: 24 QDENTPGIQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 83
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
G VS+ +P+ AL+G +G I APGG+ +L V +
Sbjct: 84 AD-GTVSVLAPMGSALLGLHVGQHIDWPAPGGKTLKLTLLAVEY 126
>gi|170719436|ref|YP_001747124.1| nucleoside diphosphate kinase regulator [Pseudomonas putida W619]
gi|169757439|gb|ACA70755.1| GreA/GreB family elongation factor [Pseudomonas putida W619]
Length = 136
Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+V+ + + + V E+ SG + +V ++A + G VSI +PI AL+G
Sbjct: 43 QVVGHEEVPAGVVTMNSRVHCREEASGKDYHLTLVYPKDAGGE-GKVSILAPIGCALLGL 101
Query: 134 ELGDIISVNAPGGE-KTYEILQVLW 157
+G+ I APGG+ ++L V +
Sbjct: 102 SVGEQIDWPAPGGKTLKLKLLAVEY 126
>gi|269966226|ref|ZP_06180315.1| hypothetical protein VMC_17450 [Vibrio alginolyticus 40B]
gi|269829141|gb|EEZ83386.1| hypothetical protein VMC_17450 [Vibrio alginolyticus 40B]
Length = 159
Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 55/147 (37%), Gaps = 12/147 (8%)
Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAEV 75
L + Q +AI A + E+ A E L G R+ + E + +
Sbjct: 14 LEEKLQVAHASAQRAIDAATDEETVPEHKYDTLALEAAYLAHGQAMRIQDSEEELRQYRS 73
Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSPIAR 128
+ + GA V L ++N +K + VG + ++ SP+ R
Sbjct: 74 LVTRDFKNAPVGVGAYVVLADENLLEKHFF--VGPCSGGLAVQYQAQEVFVLTAKSPLGR 131
Query: 129 ALIGKELGDIISVNAPGGEKTYEILQV 155
AL GKE GD + V YE++ V
Sbjct: 132 ALFGKEEGDEVDVKIGDKTTCYEVVTV 158
>gi|15964020|ref|NP_384373.1| nucleoside diphosphate kinase regulator [Sinorhizobium meliloti
1021]
gi|307301166|ref|ZP_07580928.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
gi|307321067|ref|ZP_07600472.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
gi|15073196|emb|CAC41704.1| Putative regulator of nucleoside diphosphate kinase [Sinorhizobium
meliloti 1021]
gi|306893239|gb|EFN24020.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
gi|306903622|gb|EFN34209.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
Length = 135
Score = 57.1 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA + + D + G+TV+ + ++G K ++V EAD+++G +S+ +PI
Sbjct: 43 SELDRARIAAPGKLPKDSVQMGSTVAF-DADNGFAKEVRLVYPGEADIEAGKISVLTPIG 101
Query: 128 RALIGKELGDIISVNAPGGEKT 149
ALIG +G I G+
Sbjct: 102 AALIGLSVGQSIDWVDRAGKVH 123
>gi|315127979|ref|YP_004069982.1| transcription elongation factor and transcript cleavage
[Pseudoalteromonas sp. SM9913]
gi|315016493|gb|ADT69831.1| transcription elongation factor and transcript cleavage
[Pseudoalteromonas sp. SM9913]
Length = 47
Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
+ +T +G+ ++QQE E+RP + K +S A + GD SENA+
Sbjct: 1 MKTNLITREGYLQLQQEHDHLWNEKRPEVTKIVSWAASLGDRSENAD 47
>gi|237797836|ref|ZP_04586297.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331020686|gb|EGI00743.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 132
Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 56 QNLNEGRMAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
Q+ + + L+ + RA +V+ + + + V E+ SG + ++V Q+A
Sbjct: 24 QDEDAPGIQALQAELDRAEQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 83
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+ G VS+ +P+ AL+G ++G I APGG+ +L V +
Sbjct: 84 AE-GTVSVLAPMGSALLGLQVGQHIDWPAPGGKTLKLTLLAVEY 126
>gi|264679251|ref|YP_003279158.1| hypothetical protein CtCNB1_3116 [Comamonas testosteroni CNB-2]
gi|262209764|gb|ACY33862.1| hypothetical protein CtCNB1_3116 [Comamonas testosteroni CNB-2]
Length = 160
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/164 (15%), Positives = 64/164 (39%), Gaps = 19/164 (11%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60
+DK+ + + ++ ++L +Q R EA + + +Y +
Sbjct: 1 MDKLLLQQQVLKRLAEDLVQVEQAARVA-----HEAATHEENIAENKYDTLGLEASYLAA 55
Query: 61 ---GRMAELENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
R + + + + I GA + LV+ + ++ + +G +++
Sbjct: 56 GQARRAEAIRQAMANWRQFRPQPYNASKGIQLGALICLVDSDDKQQQIF--LGPDGGNMK 113
Query: 117 -------SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
++S +P+ RA++GK GD +S+ + +E+L
Sbjct: 114 LFNGAELIQVISSKAPLGRAMLGKCEGDEVSIQVAPVRQQFEVL 157
>gi|260466738|ref|ZP_05812924.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum
WSM2075]
gi|259029468|gb|EEW30758.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum
WSM2075]
Length = 140
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL + + RA + D + M D + G+TV++ GD + +V EAD+ +S+ +
Sbjct: 40 ELLSEMDRAVIADAAAMPADVVRMGSTVAVS-SEGGDIQRITLVYPGEADIAENRISVLT 98
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQV 155
P+ ALIG +G ++ ++ G E + I V
Sbjct: 99 PMGTALIGAAIGQVVCWSSRDGRELSVTIEAV 130
>gi|257482604|ref|ZP_05636645.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|330892779|gb|EGH25440.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
mori str. 301020]
gi|330984809|gb|EGH82912.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012755|gb|EGH92811.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 135
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 63 MAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ L+ + RA +V+ + + + V E+ SG + ++V Q+A G VS
Sbjct: 31 IQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAD-GTVS 89
Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+ +P+ AL+G ++G I APGG+ +L V +
Sbjct: 90 VLAPMGSALLGLQVGQHIDWPAPGGKTLKLTLLAVEY 126
>gi|329888405|ref|ZP_08267003.1| regulator of nucleoside diphosphate kinase [Brevundimonas diminuta
ATCC 11568]
gi|328846961|gb|EGF96523.1| regulator of nucleoside diphosphate kinase [Brevundimonas diminuta
ATCC 11568]
Length = 136
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + RA+V + M + + + V+ +S + + Q+V ++AD+ +G VSI S
Sbjct: 38 LQQELDRAKVCEPKAMPKNVVTLNRWLQYVDDHSPEVRRVQLVLPKDADIDAGRVSILSY 97
Query: 126 IARALIGKELGDIISV-NAPGGEKTYEILQVL 156
+ LIG + G I+ + G + +++V
Sbjct: 98 VGAGLIGLKEGQSINWPDTSGAARKLTLVKVE 129
>gi|148557737|ref|YP_001265319.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
gi|148502927|gb|ABQ71181.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
Length = 157
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 47/106 (44%), Gaps = 8/106 (7%)
Query: 52 AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
+E + + E+ GD AFG + + +G +K IVGD
Sbjct: 57 TEEQLKSLKRDLRYWTTRHATMEI--QPPADGDEAAFGTR--VRYRLNGQEKAVAIVGDD 112
Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
EAD +GLVS SSP+ARALIG GD G+ E+L V
Sbjct: 113 EADPAAGLVSFSSPLARALIGAGEGDFADF---AGKADAIEVLGVE 155
>gi|255534407|ref|YP_003094778.1| GreA/GreB family elongation factor [Flavobacteriaceae bacterium
3519-10]
gi|255340603|gb|ACU06716.1| GreA/GreB family elongation factor [Flavobacteriaceae bacterium
3519-10]
Length = 127
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 41 GDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
G ++ K++ E R+ + A+ + + D + V + +
Sbjct: 10 GIYDAIKDHVRRKKVTAEEESRIL---AELRGAKQVRRKELPEDVVTVDRKVRIKDHTQN 66
Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
++ Y VG EA + SI S +A A +G ++GD+I GGE+ EIL+V
Sbjct: 67 KEQEYIFVGIAEAKPKRNKHSILSEMALATVGYKVGDVIEWPFEGGERKIEILKVE 122
>gi|13473408|ref|NP_104975.1| nucleoside diphosphate kinase regulator [Mesorhizobium loti
MAFF303099]
gi|14024157|dbj|BAB50761.1| nucleoside diphosphate kinase regulator [Mesorhizobium loti
MAFF303099]
Length = 140
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA V D + M D + G+ V++ G + +V EAD+ +S+ +P+ A
Sbjct: 45 MDRAVVTDAAAMPADVVRMGSAVTVR-GEGGATQRIMLVYPGEADIAENRISVLTPMGTA 103
Query: 130 LIGKELGDIISVNAPGG-EKTYEILQV 155
LIG +G + ++ GG E + + V
Sbjct: 104 LIGASIGQAVCWSSRGGRELSVTVEAV 130
>gi|298292903|ref|YP_003694842.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
gi|296929414|gb|ADH90223.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
Length = 142
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
EL+ + RA+V+ +T+ + G+TV + ++ +V EAD+ G VSI +
Sbjct: 40 ELQIEMERAQVLSTATIPEGVVQMGSTVEYH-SDVEQRRRITLVYPGEADIAEGRVSILT 98
Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
PI ALIG G I + G E +L+V
Sbjct: 99 PIGAALIGLSAGQSIRWVSRDGREHVLTVLKVE 131
>gi|297624445|ref|YP_003705879.1| transcription elongation factor GreA/GreB domain-containing protein
[Truepera radiovictrix DSM 17093]
gi|297165625|gb|ADI15336.1| transcription elongation factor GreA/GreB domain protein [Truepera
radiovictrix DSM 17093]
Length = 1819
Score = 56.4 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 82 SGDRIAFGATVSLVEKNS-GDKKNYQI-VGDQEADVQSGLVSISSPIARALIGKELGDII 139
G + G V + N G QI VG + + G+++ +P+ARAL+GK + ++
Sbjct: 1742 QGAVVRVGDFVRYCDANDLGQVFTVQITVGTSK--PEMGIINYQTPVARALLGKRVNEVA 1799
Query: 140 SVNAPGGEKTYEILQV 155
+++ P G +L++
Sbjct: 1800 TIHLPLGTTEVIVLEI 1815
>gi|330962357|gb|EGH62617.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 135
Score = 56.0 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+V+ + + + V E+ SG + +V Q+A V+ G VS+ +P+ AL+G
Sbjct: 43 QVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLTLVYPQDAGVE-GTVSVLAPMGSALLGL 101
Query: 134 ELGDIISVNAPGGE-KTYEILQVLW 157
++G I APGG+ +L V +
Sbjct: 102 QVGQHIDWPAPGGKTLKLTLLAVEY 126
>gi|121583336|ref|YP_973772.1| GreA/GreB family elongation factor [Polaromonas naphthalenivorans
CJ2]
gi|120596594|gb|ABM40030.1| GreA/GreB family elongation factor [Polaromonas naphthalenivorans
CJ2]
Length = 132
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 38/84 (45%)
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
AELE+ ++ + D I + V +V+ S ++ I +A+ G +S+
Sbjct: 28 AELESSFEFPHLVASRDIPADVITMYSQVEIVDPLSHRRQKLTICYPGDAEPALGFISVL 87
Query: 124 SPIARALIGKELGDIISVNAPGGE 147
SP+ +L+G +G P G+
Sbjct: 88 SPVGTSLLGLSVGATAHWRTPTGD 111
>gi|299534164|ref|ZP_07047515.1| GreA/GreB family elongation factor [Comamonas testosteroni S44]
gi|298717811|gb|EFI58817.1| GreA/GreB family elongation factor [Comamonas testosteroni S44]
Length = 305
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 2/98 (2%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E + +LE+ I RA V+D + + + + L +V ++AD +G
Sbjct: 200 ESQAVDLEHEIERAVVVDARQVQRNVVTMNSKALLR--LDEMAVEVALVYPEDADDSAGR 257
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S+ S + A++G GD I I +VL+
Sbjct: 258 LSVFSGVGTAILGCREGDRIDWRILDRTCHIRIEKVLY 295
>gi|154246864|ref|YP_001417822.1| nucleoside diphosphate kinase regulator [Xanthobacter autotrophicus
Py2]
gi|154160949|gb|ABS68165.1| GreA/GreB family elongation factor [Xanthobacter autotrophicus Py2]
Length = 143
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA ++ I + + G+ V+ + G+ + +V ++AD+ + VS+ +PI A
Sbjct: 50 LDRARLVPIGRVPATAVQMGSKVTY--EAGGNARTVTLVYPEDADIAAARVSVMTPIGAA 107
Query: 130 LIGKELGDIISVNAPGGEK-TYEILQVL 156
LIG G I A G + ++++V
Sbjct: 108 LIGLSKGQSICWTARDGRRHELKVIEVQ 135
>gi|150398653|ref|YP_001329120.1| nucleoside diphosphate kinase regulator [Sinorhizobium medicae
WSM419]
gi|150030168|gb|ABR62285.1| GreA/GreB family elongation factor [Sinorhizobium medicae WSM419]
Length = 135
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA + + D + G+TV+ ++G K ++V EAD+++G +S+ +PI A
Sbjct: 45 LDRARIAAPGKLPKDSVQMGSTVAFH-ADNGFAKEVRLVYPGEADIEAGKISVLTPIGAA 103
Query: 130 LIGKELGDIISVNAPGGEKT 149
LIG +G I + G+
Sbjct: 104 LIGLSVGQSIDWSDRAGKIH 123
>gi|319791556|ref|YP_004153196.1| transcription elongation factor grea/greb domain-containing protein
[Variovorax paradoxus EPS]
gi|315594019|gb|ADU35085.1| transcription elongation factor GreA/GreB domain-containing protein
[Variovorax paradoxus EPS]
Length = 160
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 11/162 (6%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK + + +++ ++L +Q R A E + + +AA
Sbjct: 1 MDKFLLQQQVLERLAEDLLQAEQAVRAAHETATHEENVAENKYDTLGLEAAYLATGQ-AR 59
Query: 62 RMAELENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--- 117
R + + + I GA V L++ + ++ + +G +
Sbjct: 60 RAEAIRQAMANWRQFRPRPYDASKGIQLGALVCLIDSDDKQQQLF--LGPNGGSMTLVSG 117
Query: 118 ----GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
++S +P+ RA++GK GD +S+ + +E+L+V
Sbjct: 118 AQFVQVISSDAPLGRAVLGKCEGDEVSIQVALTRRQFEVLRV 159
>gi|300776138|ref|ZP_07085997.1| GreA/GreB family elongation factor [Chryseobacterium gleum ATCC
35910]
gi|300505271|gb|EFK36410.1| GreA/GreB family elongation factor [Chryseobacterium gleum ATCC
35910]
Length = 126
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
+ + E E + +V+ + D + V+L + + Y V
Sbjct: 17 DTLRRKKVSIEEEKRLTEELRKAKQVLRRD-LPADIVTVDRKVTLKDHTLNFEHEYIFVP 75
Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ ++ SI S IA A++G ++GD+IS GE+ EIL+V
Sbjct: 76 SVKEKLKKNKYSILSDIALAVVGYKVGDVISWPFRDGERKIEILKVE 122
>gi|331017912|gb|EGH97968.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 135
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+V+ + + + V E+ SG + ++V Q+A + G VS+ +P+ AL+G
Sbjct: 43 QVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAE-GTVSVLAPMGSALLGL 101
Query: 134 ELGDIISVNAPGGE-KTYEILQVLW 157
++G I APGG+ +L V +
Sbjct: 102 QVGQHIDWPAPGGKTLKLTLLAVEY 126
>gi|115373796|ref|ZP_01461089.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1]
gi|310817548|ref|YP_003949906.1| transcription elongation factor [Stigmatella aurantiaca DW4/3-1]
gi|115369195|gb|EAU68137.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1]
gi|309390620|gb|ADO68079.1| Transcription elongation factor [Stigmatella aurantiaca DW4/3-1]
Length = 171
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 13/132 (9%)
Query: 36 EARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA-EVIDISTMSGDRIAFGATVSL 94
E+ D EY + Q+ R+ E I+ E GD +A GA V +
Sbjct: 40 ESEKKEDGRAAIEYGSLATGQSARARRLHEELGILAAFSEAGAPRFRRGDPVALGAVVDV 99
Query: 95 VEKNSG--DKKNYQ---------IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
++ D++ + + G D +++ +SP+ RAL+G+ GD + V
Sbjct: 100 RTEDEQGYDERTFFVLPVGAGTELTGP-GGDGFLSVITPASPVGRALLGRRAGDSVDVTL 158
Query: 144 PGGEKTYEILQV 155
G + + +L+V
Sbjct: 159 GGDVREWTVLEV 170
>gi|152982035|ref|YP_001353580.1| GreA family transcription elongation factor [Janthinobacterium sp.
Marseille]
gi|151282112|gb|ABR90522.1| transcription elongation factor, greA family [Janthinobacterium sp.
Marseille]
Length = 139
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 52 AKELQNLNEGRMAELE---NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV 108
A+ L + E + E +II+ + ++ + + +TVS ++ + + IV
Sbjct: 19 AEHLLRMGEVEINAGEQLIDIISTSIILPVDVQRKGYVTLYSTVSYSPVDTEEVRKLTIV 78
Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
Q+A+ Q L+S +PI ALIG++ + V P + +IL V
Sbjct: 79 CPQDANPQLALISALTPIGLALIGRKALTTVEVALPSKRVEKLKILDVT 127
>gi|28867461|ref|NP_790080.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
pv. tomato str. DC3000]
gi|213970732|ref|ZP_03398857.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
pv. tomato T1]
gi|301382620|ref|ZP_07231038.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
tomato Max13]
gi|302061760|ref|ZP_07253301.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
tomato K40]
gi|302133639|ref|ZP_07259629.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
tomato NCPPB 1108]
gi|28850695|gb|AAO53775.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
pv. tomato str. DC3000]
gi|213924566|gb|EEB58136.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
pv. tomato T1]
Length = 135
Score = 55.6 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
+V+ + + + V E+ SG + ++V Q+A + G VS+ +P+ AL+G
Sbjct: 43 QVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAE-GTVSVLAPMGSALLGL 101
Query: 134 ELGDIISVNAPGGE-KTYEILQVLW 157
++G I APGG+ +L V +
Sbjct: 102 QVGQHIDWPAPGGKTLKLTLLAVEY 126
>gi|264677460|ref|YP_003277366.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2]
gi|262207972|gb|ACY32070.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2]
Length = 305
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E + +LE+ I RA V+D + G+ + + L +V ++AD +G
Sbjct: 200 ESQAVDLEHEIERAAVVDARQVQGNVVTMNSKALLR--LDEVAVEVALVYPEDADDSAGR 257
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+S+ S + A++G GD I I +VL+
Sbjct: 258 LSVFSGVGTAILGCREGDRIDWRILDRTCHIRIEKVLY 295
>gi|260896883|ref|ZP_05905379.1| transcription elongation factor GreA [Vibrio parahaemolyticus
Peru-466]
gi|308086278|gb|EFO35973.1| transcription elongation factor GreA [Vibrio parahaemolyticus
Peru-466]
Length = 38
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
S+SSPIAR LIGK GD +++ PGG K +EI +V +I
Sbjct: 1 SVSSPIARGLIGKMEGDEVAIQTPGGAKDFEIDRVEYI 38
>gi|302189437|ref|ZP_07266110.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
syringae 642]
gi|330941155|gb|EGH44034.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
pisi str. 1704B]
Length = 135
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 3/104 (2%)
Query: 56 QNLNEGRMAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
Q+ + + L+ + RA +V+ + + + V E+ SG + ++V Q+A
Sbjct: 24 QDEDAPGIQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 83
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
G VS+ +P+ AL+G ++G I APGG+ +L V +
Sbjct: 84 AD-GTVSVLAPMGSALLGLQIGQHIDWPAPGGKTLKLTLLAVEY 126
>gi|312883771|ref|ZP_07743490.1| hypothetical protein VIBC2010_14259 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368520|gb|EFP96053.1| hypothetical protein VIBC2010_14259 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 162
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 65/157 (41%), Gaps = 19/157 (12%)
Query: 14 KIQQE----LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAE 65
++++E L+ + + +A++ A + E+ Y R+ E
Sbjct: 9 QLKEEIVSMLQQQHNITLDAVNQAVASATDKETIPEHK-YDTLALEAAYLAHGQAMRVTE 67
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG------- 118
E I + +D+ + D++ G V+L ++N+ ++ V ++
Sbjct: 68 SEERIRQFLALDL-PQNPDQVTLGCLVALRDENA--SLHWFFVSPVSGGLKVNWQGLSII 124
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
LV+ SP+ +AL GKELGD + K Y++ +
Sbjct: 125 LVTFQSPLGKALRGKELGDDVEYLVGNETKYYQVETI 161
>gi|327403126|ref|YP_004343964.1| GreA/GreB family elongation factor [Fluviicola taffensis DSM 16823]
gi|327318634|gb|AEA43126.1| GreA/GreB family elongation factor [Fluviicola taffensis DSM 16823]
Length = 130
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 1/105 (0%)
Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
E +L ++ L + AE+ + ++ V G Q+V +
Sbjct: 24 SESTSLMNSCISRLREELKTAELFTNGADFPQDVIRLNSIVDVNTPFG-IMKIQLVLPEN 82
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
++ + +SI +P+ ALIG D I P G EIL+V
Sbjct: 83 SNSEQKRISILTPMGSALIGYAEKDKIMWEFPNGTHEVEILKVSH 127
>gi|330952175|gb|EGH52435.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae Cit
7]
Length = 135
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 63 MAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ L+ + RA +V+ + + + V E+ SG + ++V Q+A G VS
Sbjct: 31 IQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAD-GTVS 89
Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+ +P+ AL+G ++G I APGG+ +L V +
Sbjct: 90 VLAPMGSALLGLQIGQHIDWPAPGGKTLKLTLLAVEY 126
>gi|167647566|ref|YP_001685229.1| GreA/GreB family elongation factor [Caulobacter sp. K31]
gi|167349996|gb|ABZ72731.1| GreA/GreB family elongation factor [Caulobacter sp. K31]
Length = 141
Score = 55.2 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 15/89 (16%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA +++ + G+ + + ++G ++ ++ ++A + +S+ SP+
Sbjct: 51 HEMARALIVEPGQAPLPFVRIGSRIDYRDLSNGQTRSVRLSLPRDASIDDNRISVLSPVG 110
Query: 128 RALIGKELGDIISVN-APGGEKTYEILQV 155
AL+G G A G + +++ V
Sbjct: 111 AALVGMTAGQAFHWTDAEGRPRGVQVIAV 139
>gi|291333579|gb|ADD93273.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S08-C92]
Length = 437
Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 69/153 (45%), Gaps = 14/153 (9%)
Query: 12 FDKIQQELRWRQ--QEERPRIIKAISEARAYGDLSE-------NAEYQAAKELQNLNEGR 62
+K++++L + Q + +A E NAE Q+ + E +
Sbjct: 289 HEKLKEDLEFLQGTTIGSEEDTERKIKAMEIEIPKEKEMADEMNAEAQSLSDSNKELEEK 348
Query: 63 MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
+ + I + + + + S + G ++++ + +++V ++A++ G + +
Sbjct: 349 IKDAR-IESLNKPVAAGSSSSTGASIGTSLTVKNLTKETEHTFELVNQEDANIPQGKIPL 407
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
S+PI ++L G + GD + V G T+++L+V
Sbjct: 408 SNPIGKSLEGSKEGDEVKV----GPTTFKVLKV 436
>gi|66043448|ref|YP_233289.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
syringae B728a]
gi|63254155|gb|AAY35251.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
pv. syringae B728a]
gi|330970496|gb|EGH70562.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
aceris str. M302273PT]
gi|330983174|gb|EGH81277.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 135
Score = 54.8 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 63 MAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ L+ + RA +V+ + + + V E+ SG + ++V Q+A G VS
Sbjct: 31 IQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAD-GTVS 89
Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+ +P+ AL+G ++G I APGG+ +L V +
Sbjct: 90 VLAPMGSALLGLQIGQHIDWPAPGGKTLKLTLLAVEY 126
>gi|254562838|ref|YP_003069933.1| transcription elongation factor GreA-related [Methylobacterium
extorquens DM4]
gi|254270116|emb|CAX26106.1| putative transcription elongation factor GreA-related
[Methylobacterium extorquens DM4]
Length = 75
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
G+ V + ++G ++ +V EAD++ G VSI +PI ALIG G I GE
Sbjct: 1 MGSRVDFRDNSTGRMQSVTLVYPGEADIEQGKVSILTPIGAALIGLSKGQSIDWATRTGE 60
Query: 148 -KTYEILQVL 156
+ +L V
Sbjct: 61 TRRLTVLAVR 70
>gi|254507861|ref|ZP_05119991.1| GreA/GreB family elongation factor [Vibrio parahaemolyticus 16]
gi|219549234|gb|EED26229.1| GreA/GreB family elongation factor [Vibrio parahaemolyticus 16]
Length = 164
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 57/150 (38%), Gaps = 13/150 (8%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73
L + + + + +A+ A + E+ A E L G R+ E E I
Sbjct: 18 DSLEQKWRVAQSSMQRAVESATDEETVPEHKYDTLALEASYLAHGQAVRVQECEREIRMF 77
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSPI 126
+++ S + G+ ++V+ + D+ Y V ++ L V+ SP+
Sbjct: 78 RELELPK-SPQHVVLGSLAAVVDMS--DRTQYFFVAPCAGGLKVELDGTEVLVVTFQSPL 134
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
AL GK +GD + YEI +
Sbjct: 135 GLALKGKSVGDELEYQVSSTTFCYEIETIS 164
>gi|262393491|ref|YP_003285345.1| transcription elongation factor [Vibrio sp. Ex25]
gi|262337085|gb|ACY50880.1| transcription elongation factor [Vibrio sp. Ex25]
Length = 159
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 12/149 (8%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73
Q L + Q AI A + E+ A E L G R+ E E+ + +
Sbjct: 12 QHLEEKLQVAHASAQLAIDAATDEETVPEHKYDTLALEAAYLAHGQAMRIQESEDELRQY 71
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-------QSGLVSISSPI 126
+ G + GA V L ++N +K + VG + + +++ SP+
Sbjct: 72 RALVTRDFKGAPVGVGAYVVLADENLLEKHFF--VGPCSGGLTVKYQAQEVFVLTAKSPL 129
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
RAL GKE GD I V YE++ V
Sbjct: 130 GRALFGKEEGDEIDVKIGEKTTCYEVVTV 158
>gi|83644422|ref|YP_432857.1| transcription elongation factor [Hahella chejuensis KCTC 2396]
gi|83632465|gb|ABC28432.1| Transcription elongation factor [Hahella chejuensis KCTC 2396]
Length = 160
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 17/166 (10%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ K + K+Q +L + A + A ++EN E L EG
Sbjct: 1 MRKEKIHQLIIAKLQDDL----AVAQQAANTAHATATHEESVAENKYDTFGLEASYLAEG 56
Query: 62 ---RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
R+ E E + + D +A A V+L ++ +++ + VG + A +
Sbjct: 57 QSRRVREFEAALASYQNTPPKHFTDQDEVAVFALVTLEAEDGSERRLF--VGPEAAGFKF 114
Query: 118 GL-------VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
L ++ SPI L+GK +GD++++ A GEK +EI+++
Sbjct: 115 LLDEQEVLVITRRSPIGMKLMGKMVGDVVALVAGNGEKEFEIVEIE 160
>gi|332561347|ref|ZP_08415662.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides
WS8N]
gi|332274146|gb|EGJ19463.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides
WS8N]
Length = 146
Score = 54.8 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
+T A ++ + + D + G+ V + + + ++AD+ VSI +P+
Sbjct: 41 KLTSARLLAPARLPSDVVTIGSEVLYHDDQGARDRRVTLSWPEDADISRRSVSILTPVGV 100
Query: 129 ALIGKELGDIISVNAPGGE-KTYEILQV 155
AL+G GD GE ++ +LQV
Sbjct: 101 ALLGLSAGDRFQWQTRAGERRSLTVLQV 128
>gi|125654694|ref|YP_001033887.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides
2.4.1]
gi|77386354|gb|ABA81782.1| putative regulator of nucleoside diphosphate kinase protein
[Rhodobacter sphaeroides 2.4.1]
Length = 146
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
+T A ++ + + D + G+ V + + + ++AD+ VSI +P+
Sbjct: 41 KLTSARLLAPARLPSDVVTIGSEVLYHDDQGARDRRVTLSWPEDADISRRSVSILTPVGV 100
Query: 129 ALIGKELGDIISVNAPGGE-KTYEILQV 155
AL+G GD GE ++ +LQV
Sbjct: 101 ALLGLSAGDRFQWQTRAGERRSLTVLQV 128
>gi|330964215|gb|EGH64475.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 135
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 56 QNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
Q+ N + L+ + RAE V+ + + + V E+ SG + ++V Q+A
Sbjct: 24 QDENTPGLQALQAELDRAEHVVGHDEVPAGVVTMNSRVHCCEEVSGKDYHLKLVYPQDAG 83
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+ G VS+ +P+ ALIG ++G I APGG+ +L V +
Sbjct: 84 AE-GTVSVLAPMGSALIGLQVGQHIDWPAPGGKTLKLTLLAVEY 126
>gi|330878495|gb|EGH12644.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
Length = 135
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 56 QNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
Q+ N + L+ + RAE V+ + + + V E+ SG + ++V Q+A
Sbjct: 24 QDENTPGLQALQAELDRAEHVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAG 83
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
+ G VS+ +P+ AL+G ++G I APGG+ +L V +
Sbjct: 84 AE-GTVSVLAPMGSALLGLQVGQHIDWPAPGGKTLKLTLLAVEY 126
>gi|221634522|ref|YP_002523210.1| regulator of nucleoside diphosphate kinase protein [Rhodobacter
sphaeroides KD131]
gi|221163395|gb|ACM04357.1| regulator of nucleoside diphosphate kinase protein [Rhodobacter
sphaeroides KD131]
Length = 133
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
+T A ++ + + D + G+ V + + + ++AD+ VSI +P+
Sbjct: 28 KLTSARLLAPARLPSDVVTIGSEVLYHDDQGARDRRVTLSWPEDADISRRSVSILTPVGV 87
Query: 129 ALIGKELGDIISVNAPGGE-KTYEILQV 155
AL+G GD GE ++ +LQV
Sbjct: 88 ALLGLSAGDRFQWQTRAGERRSLTVLQV 115
>gi|74316084|ref|YP_313824.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC
25259]
gi|74055579|gb|AAZ96019.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC
25259]
Length = 138
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L + + RAE++ M D + + + V + +G + +V ++ + +++P
Sbjct: 36 LRDELDRAEILRPEAMPADVVTMNSRIRFVVEPAGKEMEMTLVYPRDFTGSPDQLPVTTP 95
Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
A++G +G I AP G+K I+ + +
Sbjct: 96 AGIAVLGLAVGQEIEWQAPNGQKVGARIVDLAY 128
>gi|59711263|ref|YP_204039.1| transcription elongation factor [Vibrio fischeri ES114]
gi|59479364|gb|AAW85151.1| transcription elongation factor [Vibrio fischeri ES114]
Length = 161
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 15/166 (9%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++K + D I ELR Q +AI +A ++ + E L
Sbjct: 1 MINKEAL----LDSIIDELRKIHQLALDATQRAIDQATDKEAIARSKYETFGLEASYLAH 56
Query: 61 G---RMAELE-NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI------VGD 110
G R++E E +I+ ++ + I GA V+LV ++ + + I V
Sbjct: 57 GQAVRVSECEADILAYRKLPRLVYTENSSINQGALVTLVNQDD-VESTFFIGPSAGGVKV 115
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
D+ L++ S+P+ +A+IG+++GD +N G ++ YEI+ V
Sbjct: 116 AHQDLVFSLITPSAPLGKAMIGQQVGDEFELNLAGKKQQYEIIDVQ 161
>gi|327481647|gb|AEA84957.1| transcription elongation factor [Pseudomonas stutzeri DSM 4166]
Length = 158
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 58/154 (37%), Gaps = 15/154 (9%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELEN 68
+I L ++ + + A +EN Y R+ E+E
Sbjct: 8 QQIIATLEADREVAKAVLAATHEAATHAESKAENK-YDTRGLEAAYLADGQRRRLHEIET 66
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VS 121
+ + S R+ GA L+ + + + +G A ++ ++
Sbjct: 67 ALAAYRNLQAGVSSDGRVRVGA---LLCLDHDGAERWFFLGPDAAGLKLQHDGREILVIT 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ + L+G+E+GD + + G + YE+LQ+
Sbjct: 124 ARSPLGQGLLGREVGDEVELRVHGQLQRYEVLQI 157
>gi|126464873|ref|YP_001041849.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides
ATCC 17029]
gi|126106688|gb|ABN79213.1| GreA/GreB family elongation factor [Rhodobacter sphaeroides ATCC
17029]
Length = 137
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
+T A ++ + +S D + G+ V + + + ++AD+ VSI +P+
Sbjct: 41 KLTSARLLAPARLSSDVVTIGSEVLYHDDQGARDRRVTLSWPEDADISRRSVSILTPVGV 100
Query: 129 ALIGKELGDIISVNAPGGE-KTYEILQV 155
AL+G GD GE ++ +LQV
Sbjct: 101 ALLGLSAGDRFQWQTRAGERRSLTVLQV 128
>gi|304412090|ref|ZP_07393700.1| transcription elongation factor GreA/GreB domain-containing
protein [Shewanella baltica OS183]
gi|307305985|ref|ZP_07585731.1| transcription elongation factor GreA/GreB domain protein
[Shewanella baltica BA175]
gi|304349640|gb|EFM14048.1| transcription elongation factor GreA/GreB domain-containing
protein [Shewanella baltica OS183]
gi|306911478|gb|EFN41904.1| transcription elongation factor GreA/GreB domain protein
[Shewanella baltica BA175]
Length = 49
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 30/48 (62%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY 49
+ +T +G+ + +EL++ +E RP+I + EA A GD SENA++
Sbjct: 1 MKAHLITRQGWQTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADF 48
>gi|332186877|ref|ZP_08388619.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Sphingomonas sp. S17]
gi|332013210|gb|EGI55273.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
domain protein [Sphingomonas sp. S17]
Length = 154
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+ D + G+ V++ +G K IVG EAD ++ ++P+ARAL+G G+
Sbjct: 77 APAPAEDEVGIGSVVTIR--LNGQTKALTIVGHDEADPSQDRIAYAAPLARALMGAMAGE 134
Query: 138 IISVNAPGGEKT-YEILQVL 156
+++ GG+ EIL V
Sbjct: 135 MVAF---GGKADAVEILDVS 151
>gi|146280271|ref|YP_001170427.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides
ATCC 17025]
gi|145558512|gb|ABP73122.1| hypothetical protein Rsph17025_4275 [Rhodobacter sphaeroides ATCC
17025]
Length = 146
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
N +T A ++ + + D + G+ V + + + ++AD+ VSI +P+
Sbjct: 40 NKLTSARLLAPARLPSDVVTIGSEVLYHDDQGARDRRVTLSWPEDADISRRSVSILTPVG 99
Query: 128 RALIGKELGDIISVNAPGGE-KTYEILQV 155
AL+G GD GE ++ +LQV
Sbjct: 100 VALLGLSAGDRFQWQTRAGERRSLTVLQV 128
>gi|256059194|ref|ZP_05449400.1| nucleoside diphosphate kinase regulator [Brucella neotomae 5K33]
Length = 109
Score = 53.7 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
G+TV N G ++ +V EAD+ +SI +PI ALIG G IS A G+
Sbjct: 1 MGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGK 59
Query: 148 K-TYEILQV 155
+ +L+V
Sbjct: 60 QHELNVLKV 68
>gi|114049385|ref|YP_739935.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
gi|113890827|gb|ABI44878.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
Length = 56
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ 50
+ +T +G+ + +EL++ +E RP+I + EA A GD SENA+Y+
Sbjct: 1 MKAHLITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYR 49
>gi|261323143|ref|ZP_05962340.1| nucleoside diphosphate kinase regulator [Brucella neotomae 5K33]
gi|261299123|gb|EEY02620.1| nucleoside diphosphate kinase regulator [Brucella neotomae 5K33]
Length = 111
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ G+TV N G ++ +V EAD+ +SI +PI ALIG G IS A
Sbjct: 1 MQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILTPIGTALIGLAPGQSISWTARD 59
Query: 146 GEK-TYEILQV 155
G++ +L+V
Sbjct: 60 GKQHELNVLKV 70
>gi|269960572|ref|ZP_06174944.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269834649|gb|EEZ88736.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 159
Score = 53.7 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 62/149 (41%), Gaps = 12/149 (8%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73
Q+L + Q +AI A + E+ A E L G R+ E E + +
Sbjct: 12 QQLEDKLQVAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEEELRQY 71
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSPI 126
+ + RIA GA V LV++N +K + +G + ++ SP+
Sbjct: 72 RTLVLRDFVDARIAVGAYVELVDENDVEKAFF--IGPCSGGLTVEWQGKEVFVLTPKSPL 129
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
RAL+GKE G+ + + YE++ +
Sbjct: 130 GRALMGKEEGEEVEMKIGDKTTCYEVVTI 158
>gi|298209251|ref|YP_003717430.1| GreA/GreB family elongation factor [Croceibacter atlanticus
HTCC2559]
gi|83849178|gb|EAP87047.1| GreA/GreB family elongation factor [Croceibacter atlanticus
HTCC2559]
Length = 139
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 43 LSENAEYQAAKELQNL--------NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94
+ E EY K + N+ + + L + + A+++D + D I F + + L
Sbjct: 7 IIEKKEYVLLKRILNISSYAKDFDTQRAIKCLNDNLKNAQILDEEDVPTDVIRFNSNI-L 65
Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
VE N KK+ +V +++ +S+ +P+ L G GD++ G + +I +
Sbjct: 66 VEFNENLKKHLHLVIPASKNIKEDKISVITPLGALLFGCAEGDVLHEKLGSGIQHLQIKK 125
Query: 155 VL 156
V+
Sbjct: 126 VI 127
>gi|260564705|ref|ZP_05835190.1| LOW QUALITY PROTEIN: prokaryotic transcription elongation factor
GreA/GreB [Brucella melitensis bv. 1 str. 16M]
gi|265989928|ref|ZP_06102485.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator
[Brucella melitensis bv. 1 str. Rev.1]
gi|265992967|ref|ZP_06105524.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator
[Brucella melitensis bv. 3 str. Ether]
gi|260152348|gb|EEW87441.1| LOW QUALITY PROTEIN: prokaryotic transcription elongation factor
GreA/GreB [Brucella melitensis bv. 1 str. 16M]
gi|262763837|gb|EEZ09869.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator
[Brucella melitensis bv. 3 str. Ether]
gi|263000597|gb|EEZ13287.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator
[Brucella melitensis bv. 1 str. Rev.1]
Length = 113
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
A G+TV N G ++ +V EAD+ +SI +PI ALIG G IS A G
Sbjct: 4 ADGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILTPIGTALIGLAPGQSISWTARDG 62
Query: 147 EK-TYEILQV 155
++ +L+V
Sbjct: 63 KQHELNVLKV 72
>gi|323491713|ref|ZP_08096891.1| hypothetical protein VIBR0546_05698 [Vibrio brasiliensis LMG 20546]
gi|323314075|gb|EGA67161.1| hypothetical protein VIBR0546_05698 [Vibrio brasiliensis LMG 20546]
Length = 164
Score = 53.3 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 13/148 (8%)
Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAEV 75
L + Q + + +AI A + E+ A E L G R+ E E I+ +
Sbjct: 20 LEQKWQIAQSSVQRAIESATDEETVPEHKYDTLALEASYLAHGQAKRLQECEQEISLFKE 79
Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-------GLVSISSPIAR 128
+ + + G VSL++ N +++ + + ++ LV+ SP+ R
Sbjct: 80 L-VMPQEPHCVVLGCLVSLLDVN--EQRKWFFISPCAGGLKVAASEATVMLVTFDSPLGR 136
Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVL 156
AL K +GD + E YEI +
Sbjct: 137 ALKSKNVGDEVIYRVAEAEHCYEIETIS 164
>gi|328474348|gb|EGF45153.1| hypothetical protein VP10329_16615 [Vibrio parahaemolyticus 10329]
Length = 185
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 12/149 (8%)
Query: 18 ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAE 74
+L + + +AI A + E+ A E L G R+ E E+ + +
Sbjct: 39 QLEEKLRIAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEDELRQYR 98
Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIA 127
+ I + I GA V LV++N+ +K+ + +G D + +++ SP+
Sbjct: 99 SMVIRDFTDAPIGVGAYVVLVDENNIEKRFF--IGPCSGGLTVAWQDQEVFVLTAKSPLG 156
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156
RAL+GKE G+ + YE++ V
Sbjct: 157 RALLGKEEGEEFEMKIGDKTTCYEVVTVS 185
>gi|298489352|ref|ZP_07007366.1| Regulator of nucleoside diphosphate kinase [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|298156143|gb|EFH97249.1| Regulator of nucleoside diphosphate kinase [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
Length = 135
Score = 52.9 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 63 MAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ L+ + RA +V+ + + + V E+ SG + ++V Q+A G VS
Sbjct: 31 IQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAD-GTVS 89
Query: 122 ISSPIARALIGKELGDIISVNAPG-GEKTYEILQVLW 157
+ +P+ AL+G ++G I APG +L V +
Sbjct: 90 VLAPMGSALLGLQVGQHIDWPAPGCKTLKLTLLAVEY 126
>gi|28899114|ref|NP_798719.1| hypothetical protein VP2341 [Vibrio parahaemolyticus RIMD 2210633]
gi|28807338|dbj|BAC60603.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
Length = 185
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 12/148 (8%)
Query: 18 ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAE 74
+L + + +AI A + E+ A E L G R+ E E+ + +
Sbjct: 39 QLEEKLRIAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEDELRQYR 98
Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIA 127
+ I + I GA V LV++N+ +K+ + +G D + +++ SP+
Sbjct: 99 SMVIRDFTDAPIGVGAYVVLVDENNIEKRFF--IGPCSGGLTVAWQDQEVFVLTAKSPLG 156
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
RAL+GKE G+ + YE++ V
Sbjct: 157 RALLGKEEGEEFEMKIGDKTTCYEVVTV 184
>gi|300088754|ref|YP_003759276.1| transcription elongation factor GreA/GreB domain-containing protein
[Dehalogenimonas lykanthroporepellens BL-DC-9]
gi|299528487|gb|ADJ26955.1| transcription elongation factor GreA/GreB domain protein
[Dehalogenimonas lykanthroporepellens BL-DC-9]
Length = 1597
Score = 52.9 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ TV V+ + + ++ ++++ + G ++I++PIARALIG LG + P
Sbjct: 1523 VEVEDTVVYVDIENPQVEKQALITCEKSNPEWGAININTPIARALIGATLGSTVEAKLPK 1582
Query: 146 GEKTYEILQVL 156
G + I +
Sbjct: 1583 GTVSLLIKDIK 1593
>gi|254670249|emb|CBA05481.1| Transcription elongation factor [Neisseria meningitidis alpha153]
Length = 40
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYG 41
+ KIP+T +G + ++QEL+ + RP +I+AI+EAR++G
Sbjct: 1 MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHG 40
>gi|108762537|ref|YP_628480.1| GreA/GreB domain-containing protein [Myxococcus xanthus DK 1622]
gi|108466417|gb|ABF91602.1| GreA/GreB domain protein [Myxococcus xanthus DK 1622]
Length = 171
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 13/132 (9%)
Query: 36 EARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS-GDRIAFGATVSL 94
E+ D E+ + Q R+ E +T+ ++ +A GA V +
Sbjct: 40 ESEKKEDGRAALEFGSLATGQAQRARRVQEELQALTKFGQAEVPRFPRQGPVALGAIVDV 99
Query: 95 VEKNSG--DKKNYQ---------IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
++ ++ + + G D +++ +SP+ RAL+G++ GD + V
Sbjct: 100 STEDEEGFSERTFFVLPAGAGTELTGP-GGDGFLSVITPASPVGRALMGRKAGDTVEVML 158
Query: 144 PGGEKTYEILQV 155
G + + +L+V
Sbjct: 159 AGEVREWTVLEV 170
>gi|148555405|ref|YP_001262987.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
gi|148500595|gb|ABQ68849.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
Length = 166
Score = 52.5 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 9/132 (6%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
RP I SEA +++ AE + + + L E I RA + + + D
Sbjct: 37 RRPAIHMIDSEAETLANMAVAAEERIPQVSELLLE--------EIDRATLYKAARIPADV 88
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
+ + V V++ +G + Q+V ++AD+ +G VSI + + LIG G I
Sbjct: 89 VTMHSHVEFVDEANGTSRTVQLVYPKDADIDAGRVSILTLVGAGLIGLREGQSILWPGRD 148
Query: 146 G-EKTYEILQVL 156
G + I +V
Sbjct: 149 GHRRLLTITRVS 160
>gi|330447801|ref|ZP_08311449.1| prokaryotic transcription elongation factor, GreA /GreB, C-terminal
domain protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328491992|dbj|GAA05946.1| prokaryotic transcription elongation factor, GreA /GreB, C-terminal
domain protein [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 160
Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/165 (22%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K + D IQ++L Q ++A + A +++EN A E L G
Sbjct: 1 MNKQML----LDDIQEKLTLTLQAATEAAMRAYNTATDDENVAENQYDTLALEASYLAHG 56
Query: 62 RMAELE----NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
+ +E +++ ++ S D + G V+LV++ + + +G V
Sbjct: 57 QAQRVEECKADLMAYQKLQASLPQSFDSVLLGHIVTLVDEEDNTRLVF--LGPTAGGVVL 114
Query: 118 GL-------VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
L V+ +SP ALIG+E+G+ + V+ YE+L +
Sbjct: 115 TLEGKPVTIVTPTSPFGDALIGREIGEEVDVHIGNSVTWYEVLAI 159
>gi|330900741|gb|EGH32160.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 123
Score = 52.1 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 63 MAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ L+ + RA +V+ + + + V E+ SG + ++V Q+A G VS
Sbjct: 31 IQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAD-GTVS 89
Query: 122 ISSPIARALIGKELGDIISVNAPGGE 147
+ +P+ AL+G ++G I APGG+
Sbjct: 90 VLAPMGSALLGLQIGQHIDWPAPGGK 115
>gi|289208813|ref|YP_003460879.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix]
gi|288944444|gb|ADC72143.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix]
Length = 137
Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 34/80 (42%)
Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136
D + G I G V L++ + + ++ + A + G +SI SP+ L+G
Sbjct: 50 DTTPRCGQVIQTGCCVRLLDLQTEETYLVELCEPEHAQPERGKISILSPLGSRLLGLRKN 109
Query: 137 DIISVNAPGGEKTYEILQVL 156
+ + + ++++L
Sbjct: 110 SLAEITLLRSRLRFLVIEIL 129
>gi|118580491|ref|YP_901741.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM
2379]
gi|118503201|gb|ABK99683.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM
2379]
Length = 172
Score = 52.1 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/154 (24%), Positives = 62/154 (40%), Gaps = 16/154 (10%)
Query: 13 DKIQQELRWRQQEERPRIIKAISE----ARAYGDLSENAEYQAAKELQNLNEGRMAELEN 68
++ ++L R +I E Y + A Y A + E R A E
Sbjct: 23 QQLSRDLELLLSAARTAHEASIHEDNVPENKYDTMGLEASYVAQGQANRGQEIRQAVQEY 82
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVS 121
D + I A V+L + G KN I G +E ++ +++
Sbjct: 83 RFLTLHPFDDDS----PIRLTALVTLRAGDDGTAKNVFI-GPREGGLKVMDQGEEVMVIT 137
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+SP+ R+LIG++ GD I + G + YEI+QV
Sbjct: 138 PASPLGRSLIGRQQGDCIETGSGAGIREYEIVQV 171
>gi|291008933|ref|ZP_06566906.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL
2338]
Length = 109
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGL 119
R+ E++ ++ A V + G G +++ + G+ + + + AD+ +
Sbjct: 8 ARIREIQELLHDAVVGEAPPDDG-VAEPGMVLTVRF-DDGETETFLLGARVGADLNGLAV 65
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK 148
S SP+ A G G+ + + P ++
Sbjct: 66 YSPESPLGAAQPGARQGEQRAYSLPKKKR 94
>gi|119774570|ref|YP_927310.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
gi|119767070|gb|ABL99640.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
Length = 136
Score = 51.8 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE ++RAEV M + + + V +S ++ ++V ++ + VSI +P
Sbjct: 34 LEAELSRAEVRPSKDMPANVVTMNSEVRFTVSSSAEEFCLRLVYPKDVSAKGDTVSILAP 93
Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+ AL+G GD + P GG I +V +
Sbjct: 94 VGSALLGLAQGDEMDWPRPGGGTTRVRIEEVTY 126
>gi|90577235|ref|ZP_01233046.1| hypothetical protein VAS14_09329 [Vibrio angustum S14]
gi|90440321|gb|EAS65501.1| hypothetical protein VAS14_09329 [Vibrio angustum S14]
Length = 160
Score = 51.4 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/155 (20%), Positives = 62/155 (40%), Gaps = 21/155 (13%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
++QQ L ++A + A +++EN A E L G+ +E
Sbjct: 13 RLQQTLEA----ATEAALRAYNTATDDENVAENQYDTLALEASYLAHGQAQRVEECKAD- 67
Query: 74 EVIDISTMSG------DRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-------QSGLV 120
VI + D + G V+L +++ K + +G + +V
Sbjct: 68 -VIAYQALQANLPKVFDTVLLGHIVTLADEDDN--KRFVFLGPSSGGLVVTFDQFSVTIV 124
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ +SP ALIG+E+G+ + V+ YE++ +
Sbjct: 125 TPTSPFGDALIGREIGEEVDVHIGDNVTWYEVMAI 159
>gi|163803786|ref|ZP_02197640.1| hypothetical protein 1103602000572_AND4_14955 [Vibrio sp. AND4]
gi|159172405|gb|EDP57277.1| hypothetical protein AND4_14955 [Vibrio sp. AND4]
Length = 159
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73
Q+L + AI A + E+ A E L G R+ E E + +
Sbjct: 12 QQLEDKLHVAHASTQSAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEEELRQY 71
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSPI 126
V+ + I+ GA V LV++N +K + +G + ++ SP+
Sbjct: 72 RVLVVRDFVDAPISVGAYVELVDENDTEKAFF--IGPCSGGLTVQWQGKEVFVLTPKSPL 129
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
ALIG+E G+ I +N YE++ V
Sbjct: 130 GCALIGREEGEEIDMNIGDNRACYEVVTV 158
>gi|325955640|ref|YP_004239300.1| GreA/GreB family elongation factor [Weeksella virosa DSM 16922]
gi|323438258|gb|ADX68722.1| GreA/GreB family elongation factor [Weeksella virosa DSM 16922]
Length = 129
Score = 51.0 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGLVSISS 124
L I E++ + D + V + G +++Y + + SI S
Sbjct: 32 LTEEIRNMELVSRKELPADIVNINRKVRVKNHTKGTEQDYIFLSSNFREKPKKNKYSILS 91
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+A A +G++ GD + GE EIL V
Sbjct: 92 SMALATLGRKTGDRFTWPFDEGEMDIEILSVE 123
>gi|153836776|ref|ZP_01989443.1| transcription elongation factor [Vibrio parahaemolyticus AQ3810]
gi|260895902|ref|ZP_05904398.1| transcription elongation factor [Vibrio parahaemolyticus Peru-466]
gi|308094401|ref|ZP_07662909.1| transcription elongation factor [Vibrio parahaemolyticus AN-5034]
gi|308125781|ref|ZP_05777348.2| transcription elongation factor [Vibrio parahaemolyticus K5030]
gi|308126243|ref|ZP_05908759.2| transcription elongation factor [Vibrio parahaemolyticus AQ4037]
gi|149749922|gb|EDM60667.1| transcription elongation factor [Vibrio parahaemolyticus AQ3810]
gi|308089372|gb|EFO39067.1| transcription elongation factor [Vibrio parahaemolyticus Peru-466]
gi|308091428|gb|EFO41123.1| transcription elongation factor [Vibrio parahaemolyticus AN-5034]
gi|308108568|gb|EFO46108.1| transcription elongation factor [Vibrio parahaemolyticus AQ4037]
gi|308115313|gb|EFO52853.1| transcription elongation factor [Vibrio parahaemolyticus K5030]
Length = 159
Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 12/148 (8%)
Query: 18 ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAE 74
+L + + +AI A + E+ A E L G R+ E E+ + +
Sbjct: 13 QLEEKLRIAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEDELRQYR 72
Query: 75 VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIA 127
+ I + I GA V LV++N+ +K+ + +G D + +++ SP+
Sbjct: 73 SMVIRDFTDAPIGVGAYVVLVDENNIEKRFF--IGPCSGGLTVAWQDQEVFVLTAKSPLG 130
Query: 128 RALIGKELGDIISVNAPGGEKTYEILQV 155
RAL+GKE G+ + YE++ V
Sbjct: 131 RALLGKEEGEEFEMKIGDKTTCYEVVTV 158
>gi|261253754|ref|ZP_05946327.1| transcription elongation factor [Vibrio orientalis CIP 102891]
gi|260937145|gb|EEX93134.1| transcription elongation factor [Vibrio orientalis CIP 102891]
Length = 158
Score = 50.6 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 7/144 (4%)
Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDI 78
L+ + +AI A + E+ A E L G+ ++ +++
Sbjct: 14 LQHKHAVAISSAQRAIESATDEETVPEHKYDTLALEASYLAHGQAMRVQECEQEIKMMSD 73
Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVSISSPIARALI 131
+ G + + D++ + + ++ LV+ SP+ +AL
Sbjct: 74 LVLPESPEKVGLGCVVELIDVDDQRKWFFIAPCSGGLKVDIEQQSIMLVTFDSPLGKALK 133
Query: 132 GKELGDIISVNAPGGEKTYEILQV 155
K+ GD + YEI +
Sbjct: 134 AKQTGDEVEYQVGQYSHCYEIEAI 157
>gi|330903801|gb|EGH34373.1| transcription elongation factor GreB [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 37
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ KE+GD + VN P GEK + + + +
Sbjct: 1 DSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIDY 35
>gi|134099089|ref|YP_001104750.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL
2338]
gi|133911712|emb|CAM01825.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL
2338]
Length = 120
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 61 GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGL 119
R+ E++ ++ A V + G G +++ + G+ + + + AD+ +
Sbjct: 8 ARIREIQELLHDAVVGEAPPDDG-VAEPGMVLTVRF-DDGETETFLLGARVGADLNGLAV 65
Query: 120 VSISSPIARALIGKELGDIISVNAP 144
S SP+ A G G+ + + P
Sbjct: 66 YSPESPLGAAQPGARQGEQRAYSLP 90
>gi|294010092|ref|YP_003543552.1| transcription elongation factor [Sphingobium japonicum UT26S]
gi|292673422|dbj|BAI94940.1| transcription elongation factor [Sphingobium japonicum UT26S]
Length = 156
Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAF 88
R+ + EA D AE A K + + + AE+ + +AF
Sbjct: 35 RLTREKVEALEAVDTQAMAEEDAKK-----LKRELRYWRTRLATAEL--RPVPDAEAVAF 87
Query: 89 GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148
G+ V+ +G +K IVGD EA+ G ++ S+P+ARA++ E G+ + G
Sbjct: 88 GSRVTYR--LNGREKRIDIVGDDEAEPAEGRIAFSAPLARAMMDAEEGETVDFAGKPGAI 145
Query: 149 TYEILQVL 156
T IL +
Sbjct: 146 T--ILAIE 151
>gi|146294926|ref|YP_001185350.1| GreA/GreB family elongation factor [Shewanella putrefaciens
CN-32]
gi|145566616|gb|ABP77551.1| GreA/GreB family elongation factor [Shewanella putrefaciens
CN-32]
Length = 66
Score = 50.6 bits (120), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
+ +T +G+ + +EL++ +E RP+I + EA A GD SENA+
Sbjct: 1 MKAHLITRQGWLALDKELKYLWKEYRPQITLKVQEAAAQGDRSENAD 47
>gi|254490444|ref|ZP_05103630.1| hypothetical protein MDMS009_776 [Methylophaga thiooxidans DMS010]
gi|224464188|gb|EEF80451.1| hypothetical protein MDMS009_776 [Methylophaga thiooxydans DMS010]
Length = 137
Score = 50.2 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE+ + RA++ID + D ++ +TV L S +V +SI SP
Sbjct: 35 LEDELERAKIIDSFQLPDDIVSMNSTVELWVTKSDFPVYMTLVYPYGMKKDGSTLSILSP 94
Query: 126 IARALIGKELGDIISVNAPGG 146
I AL+G + G+ G
Sbjct: 95 IGTALLGIKQGEEFYWPGRDG 115
>gi|197334352|ref|YP_002155417.1| transcription elongation factor [Vibrio fischeri MJ11]
gi|197315842|gb|ACH65289.1| transcription elongation factor [Vibrio fischeri MJ11]
Length = 161
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 15/166 (9%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M++K + D I ELR Q +AI +A ++ + E L
Sbjct: 1 MINKEAL----LDSIIDELRKIHQLALDATQRAIDQATDKEAIARSKYETFGLEASYLAH 56
Query: 61 G---RMAELE-NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI------VGD 110
G R++E E +I+ ++ + I A V+LV ++ + + I V
Sbjct: 57 GQAVRVSECEADILAYRKLPRLVYTEDSSINQCALVTLVNQDD-VESTFFIGPSAGGVKV 115
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
D+ L++ S+P+ +A+IG++LGD +N G ++ YEI+ V
Sbjct: 116 AHQDLVFSLITPSAPLGKAIIGQQLGDEFELNLAGKKQQYEIIDVQ 161
>gi|299531765|ref|ZP_07045167.1| hypothetical protein CTS44_13278 [Comamonas testosteroni S44]
gi|298720206|gb|EFI61161.1| hypothetical protein CTS44_13278 [Comamonas testosteroni S44]
Length = 160
Score = 50.2 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 16/146 (10%)
Query: 20 RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEV 75
Q E+ + EA + + +Y R + +
Sbjct: 16 EDLLQVEQAARVA--HEAATHEENIAENKYDTLGLEAAYLAAGQARRAEAIRQAMANWRQ 73
Query: 76 IDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-------SGLVSISSPIA 127
+ + I GA + LV+ + ++ + +G +++ ++S +P++
Sbjct: 74 FRPQPYNASQGIQLGALICLVDSDDKQQQIF--LGPDGGNMKLLNGAELIQVISSKAPLS 131
Query: 128 RALIGKELGDIISVNAPGGEKTYEIL 153
RA++GK GD +SV + +E+L
Sbjct: 132 RAMLGKCEGDEVSVQLAPVRQRFEVL 157
>gi|170720651|ref|YP_001748339.1| GreA/GreB family elongation factor [Pseudomonas putida W619]
gi|169758654|gb|ACA71970.1| GreA/GreB family elongation factor [Pseudomonas putida W619]
Length = 156
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 64/155 (41%), Gaps = 17/155 (10%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELE 67
+I L + R A A A +++EN Y + R AE+
Sbjct: 7 LTRIVAALETDMEVLRRAAQTAYETATAEENIAENK-YDTLGLEASYLATGQARRTAEIR 65
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LV 120
+ + + + R ++ ++E +G ++ + G + A ++ G ++
Sbjct: 66 QALLIYQQLVLRDYDPARGIQIGSLVILEDEAGAQRQVFL-GPEAAGLKIGEADALVTVI 124
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ SP+ + L+GK++ D +S+ G + + I++V
Sbjct: 125 TPRSPLGQQLVGKKVDDEVSL----GAQLFFIVEV 155
>gi|154253498|ref|YP_001414322.1| GreA/GreB family elongation factor [Parvibaculum lavamentivorans
DS-1]
gi|154157448|gb|ABS64665.1| GreA/GreB family elongation factor [Parvibaculum lavamentivorans
DS-1]
Length = 133
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
L+ + RA ++ ++ + D + +TV ++ + ++ E+ G VSI+
Sbjct: 39 FLDRELNRARLLPLAHVPSDVVKVNSTVEFTLDTRGERVERLKLAFPAESTAGDGYVSIA 98
Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
SP+ AL+G G I + GE ++ ++L+V
Sbjct: 99 SPVGVALLGLREGQSIEWTSRYGERRSLKVLKVT 132
>gi|114328079|ref|YP_745236.1| transcription elongation factor greB [Granulibacter bethesdensis
CGDNIH1]
gi|114316253|gb|ABI62313.1| transcription elongation factor greB [Granulibacter bethesdensis
CGDNIH1]
Length = 164
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
VT G I+ E+ Q + E+ L+ + Y A+
Sbjct: 30 VTLSGLTAIEAEIARLQTALAEEKQSTVEESERRAVLARDLRYWLARR------------ 77
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
A+++ + + + +AFG TV L G Y+IVG+ EAD + GL+S +SP+
Sbjct: 78 ----ASAQLVPTAPENAEEVAFGDTVKLK--LGGRTVTYRIVGEDEADPKQGLISYASPL 131
Query: 127 A 127
A
Sbjct: 132 A 132
>gi|330884640|gb|EGH18789.1| transcription elongation factor GreB [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 37
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
SP+ARAL+ KE GD + VN P GEK + + +++
Sbjct: 1 DSPMARALLKKEEGDEVLVNTPEGEKLWFVNSIVY 35
>gi|89072414|ref|ZP_01158993.1| hypothetical protein SKA34_06560 [Photobacterium sp. SKA34]
gi|89051946|gb|EAR57398.1| hypothetical protein SKA34_06560 [Photobacterium sp. SKA34]
Length = 160
Score = 49.8 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 17/153 (11%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI---I 70
++QQ L ++A + A +++EN A E L G+ +E I
Sbjct: 13 RLQQTLEA----ATEAALRAYNTATDDENVAENQYDTLALEASYLAHGQAQRVEECKADI 68
Query: 71 TRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS------ 123
T +V+ + + D + G V+L +++ + +G + S
Sbjct: 69 TAYQVLQANLPKAFDTVLLGHIVTLADEDDN--MRFVFLGPSSGGLVVTFEQYSVTIVTP 126
Query: 124 -SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP AL+G+E+G+ + ++ YE++ +
Sbjct: 127 TSPFGDALVGREIGEEVDIHIGDKVTWYEVMAI 159
>gi|87119377|ref|ZP_01075275.1| hypothetical protein MED121_13945 [Marinomonas sp. MED121]
gi|86165768|gb|EAQ67035.1| hypothetical protein MED121_13945 [Marinomonas sp. MED121]
Length = 160
Score = 49.4 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 9/147 (6%)
Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIIT 71
I++ L R + +A A ++EN E L G R+ E EN +
Sbjct: 10 IKKMLEKRFETAATAAHQAYEAATDKESVAENKYDTFGLEASYLAHGQSQRVIECENDLK 69
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQSG---LVSISSP 125
+ + D + +E+++G + I G Q D + L++ SSP
Sbjct: 70 HFLSMTFKDFNEDDAIAMGALVELEESAGKQITCFISPCAGGQAFDFEGKNCLLITPSSP 129
Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
+ RAL+G L D + V K YEI
Sbjct: 130 LGRALLGANLEDEVKVTIGADTKFYEI 156
>gi|326795231|ref|YP_004313051.1| transcription elongation factor GreA/GreB domain-containing protein
[Marinomonas mediterranea MMB-1]
gi|326545995|gb|ADZ91215.1| transcription elongation factor GreA/GreB domain-containing protein
[Marinomonas mediterranea MMB-1]
Length = 161
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 20/136 (14%)
Query: 31 IKAISEARAYGDLSENAEYQAAKELQNLNEGR--MAELENIITRAEVIDISTMSGDRIAF 88
++++E + EN+ Y A + Q + E R + N + ++
Sbjct: 37 AESVAETKYDTFGLENS-YLAHGQTQRVFECREDLHFFMNWRPNTK-------DRGAVSV 88
Query: 89 GATVSLVEKNSGDKKNYQIVGDQEAD------VQSGLVSISSPIARALIGKELGDIISVN 142
G V + +G Y +V + LVS+ SPI ++L+GK GD +V
Sbjct: 89 GDLVEV--DVNGVTSFYLLVPRCGGNKVSVQAADIQLVSLDSPIGKSLMGKSEGDEFTV- 145
Query: 143 APGGEKTY-EILQVLW 157
G + Y EI + +
Sbjct: 146 LRAGVEVYAEISDIHY 161
>gi|148979983|ref|ZP_01815823.1| hypothetical protein VSWAT3_09463 [Vibrionales bacterium SWAT-3]
gi|145961506|gb|EDK26809.1| hypothetical protein VSWAT3_09463 [Vibrionales bacterium SWAT-3]
Length = 157
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 14/149 (9%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73
+L R + + +AI A + E+ A E L G R+ E E I
Sbjct: 12 DQLESRLRIAQSATQRAIDAATDEETVPEHKYDTLALEASYLAHGQAVRVQECEEDIQCY 71
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ----SGLVSI---SSPI 126
++ +++ + V +++++ D+ + +G + + VSI ++P
Sbjct: 72 R--NLVLRDSEKVTVSSYVVVIDEH--DQYKHFFMGPRVGGLSVTWNGNEVSIVTSNAPF 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
RAL+GKE+GD I + YE++ +
Sbjct: 128 GRALMGKEVGDEIEFSVADKPFCYEVVSI 156
>gi|197103525|ref|YP_002128902.1| transcription elongation factor GreA/GreB family [Phenylobacterium
zucineum HLK1]
gi|196476945|gb|ACG76473.1| transcription elongation factor GreA/GreB family [Phenylobacterium
zucineum HLK1]
Length = 131
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
+ +TV+ + + ++ Q+V + A VSI SPI ALIG G +
Sbjct: 54 DLRFVRLNSTVTYKDLRTRRRRIVQVVQPEHAHQDENRVSILSPIGAALIGLPEGSVFRW 113
Query: 142 --NAPGGEKTYEILQVL 156
G + ++L V
Sbjct: 114 AERIDGATRAVKVLAVE 130
>gi|302339975|ref|YP_003805181.1| GreA/GreB family elongation factor [Spirochaeta smaragdinae DSM
11293]
gi|301637160|gb|ADK82587.1| GreA/GreB family elongation factor [Spirochaeta smaragdinae DSM
11293]
Length = 131
Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/97 (21%), Positives = 39/97 (40%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
E + L + + A V+D + + A V+ ++G + IV + +
Sbjct: 31 EPYLRHLYDELQAAVVLDEGVLPAGTVTLYAEVAYTNLSTGSRHQASIVFPADQNHDEKR 90
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SI +P+ ALIG+ + AP G+ I +
Sbjct: 91 YSIFTPLGAALIGESEHNRTICYAPAGDIPLRIDAIT 127
>gi|118465685|ref|YP_881204.1| transcription elongation factor GreA [Mycobacterium avium 104]
gi|118166972|gb|ABK67869.1| transcription elongation factor GreA [Mycobacterium avium 104]
Length = 177
Score = 48.3 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/148 (14%), Positives = 53/148 (35%), Gaps = 23/148 (15%)
Query: 15 IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
++ EL + + + + R ++ R+ LE ++
Sbjct: 17 LRDELSALRSQRSVEVPDDFMDYR-----------PGRAARPSVRRNRIRVLEELLA--- 62
Query: 75 VIDISTMSGDRIA-----FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
SGDR A G +++ +G+ + + + + + S++SP+ R+
Sbjct: 63 ---AGPGSGDRAAQAVAAPGMVLTIRYDATGETETFLLGRRNGGGGRVKVYSMASPLGRS 119
Query: 130 LIGKELGDIISVNAPGGE-KTYEILQVL 156
+ G G+ P + +L+V+
Sbjct: 120 VAGARPGEQRIYAIPNDTGRVVTLLKVV 147
>gi|226942722|ref|YP_002797795.1| hypothetical protein Avin_05670 [Azotobacter vinelandii DJ]
gi|226717649|gb|ACO76820.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
Length = 160
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 17/165 (10%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60
+ K V +++ +L R + A A ++EN Y
Sbjct: 1 MSKTRVLQLILARLEDDLAL----ARIAVQTAHEAATHEESVAENK-YDTRGLEAAYLAA 55
Query: 61 ---GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA---- 113
R+ E+ + R + R + + G ++ + G A
Sbjct: 56 GQSRRLEEIRQALNRYRNLQARPFDAGRGIQLTDLVRLVDGQGVEQTLFL-GPDAAGLKV 114
Query: 114 ---DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
D Q +++ SP+ + L+G+ GD I + G + YE+L+V
Sbjct: 115 RDGDRQVMVITPRSPLGQRLLGRGEGDEIELTLAGALQRYEVLEV 159
>gi|254417960|ref|ZP_05031684.1| hypothetical protein BBAL3_270 [Brevundimonas sp. BAL3]
gi|196184137|gb|EDX79113.1| hypothetical protein BBAL3_270 [Brevundimonas sp. BAL3]
Length = 141
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 34/81 (41%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
L+ + RA + + + V+ S + QIV EAD+ +G VS+ S
Sbjct: 42 LQEELERAVICEPGDRPRGAAPLHRWLHYVDGRSPQPRRIQIVLPNEADIDAGKVSVLSY 101
Query: 126 IARALIGKELGDIISVNAPGG 146
+ LIG G I+ P G
Sbjct: 102 VGAGLIGLVEGHTIAWTDPSG 122
>gi|120554811|ref|YP_959162.1| GreA/GreB family elongation factor [Marinobacter aquaeolei VT8]
gi|120324660|gb|ABM18975.1| GreA/GreB family elongation factor [Marinobacter aquaeolei VT8]
Length = 128
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 37/76 (48%)
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
LE+ ++RA++ ++ M + + V + +++G++ +V E VSI +P
Sbjct: 34 LEDELSRADMKPLADMPEGVVTMNSRVRFLNEDTGEEHEVALVYPHEVGDADHKVSILAP 93
Query: 126 IARALIGKELGDIISV 141
A++G +G I
Sbjct: 94 AGAAMLGLSIGSSIEW 109
>gi|209694346|ref|YP_002262274.1| hypothetical protein VSAL_I0758 [Aliivibrio salmonicida LFI1238]
gi|208008297|emb|CAQ78443.1| hypothetical protein VSAL_I0758 [Aliivibrio salmonicida LFI1238]
Length = 173
Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 18/168 (10%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQA----AKELQ 56
M++K + D I Q+LR Q +AI +A + ++Y+ A L
Sbjct: 12 MIEKEAL----LDSIIQQLRQVHQMALEATQRAIEQA-TDKEAIARSKYETFGLEASYLA 66
Query: 57 NLNEGRMAE-LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI-------V 108
+ R++E +I+ ++ + I A V+LV ++ + + I V
Sbjct: 67 HGQARRVSECDADILAYRKLPRLEYGEDSVINQCALVTLVNQDD-IESQFFIGPSAGGGV 125
Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
D+ L++ S+P+ +A+IGK+LGD ++ G ++ YEI+ V
Sbjct: 126 KVTHEDMTFLLITPSAPLGKAMIGKQLGDEFELDLSGRKQQYEIIGVQ 173
>gi|167649023|ref|YP_001686686.1| GreA/GreB family elongation factor [Caulobacter sp. K31]
gi|167351453|gb|ABZ74188.1| GreA/GreB family elongation factor [Caulobacter sp. K31]
Length = 139
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 25 EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
RP II A +EA L+ A + L E I RAE+ M
Sbjct: 8 VARPDIILAETEADRLSALATRLRDAAPQAADLLLE--------EIERAEIRADLDMPRT 59
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
+ + V V++ G+ + +V ++AD+ +G VS+ S + LIG I
Sbjct: 60 VVRMESVVQFVDEAHGNPRTVLLVYPRDADIAAGKVSVLSFVGAGLIGLSPHQAIQWPDR 119
Query: 145 GG-EKTYEILQVL 156
G ++T IL+V
Sbjct: 120 NGRQRTLRILKVR 132
>gi|156975529|ref|YP_001446436.1| hypothetical protein VIBHAR_03261 [Vibrio harveyi ATCC BAA-1116]
gi|156527123|gb|ABU72209.1| hypothetical protein VIBHAR_03261 [Vibrio harveyi ATCC BAA-1116]
Length = 159
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 37/149 (24%), Positives = 60/149 (40%), Gaps = 12/149 (8%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73
Q+L + +AI A + E+ A E L G R+ E E + +
Sbjct: 12 QQLEDKLHVAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEEELRQY 71
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSPI 126
+ + RIA GA V LV++N +K + +G + ++ SP+
Sbjct: 72 RTLVLRDFVDARIAVGAYVELVDENDVEKAFF--IGPCSGGLTVEWQGKEVFVLTPKSPL 129
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL+GKE G+ I V YE++ V
Sbjct: 130 GCALVGKEEGEDIDVKIGDKTTCYEVVTV 158
>gi|114775474|ref|ZP_01451042.1| GreA/GreB family elongation factor [Mariprofundus ferrooxydans
PV-1]
gi|114553585|gb|EAU55966.1| GreA/GreB family elongation factor [Mariprofundus ferrooxydans
PV-1]
Length = 161
Score = 47.9 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 32 KAISEARA---YGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGD 84
+A+S AR + D +++Y+ + R+ E+E + E +S +
Sbjct: 26 QAVSIARDTAVHADCLGSSKYETMGLEASYLAQGQGKRLLEVERALAYFE--QLSLPAPS 83
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGD------QEADVQSGLVSISSPIARALIGKELGDI 138
+ +++ ++ +++ + D AD ++++ SP+ AL+GK GD
Sbjct: 84 PVIGLSSLVVLADEHHEQRYLWLAADAGGLKIDYADTPITIITVKSPLGSALVGKAAGDE 143
Query: 139 ISVNAPGGEKTYEILQ 154
+ G + Y ++
Sbjct: 144 FEICIAGKTRAYTVVS 159
>gi|193078340|gb|ABO13313.2| hypothetical protein A1S_2907 [Acinetobacter baumannii ATCC 17978]
Length = 1250
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 59 NEGRMAELENIITRAEVID-----ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
E + ++ N +V + ++ +I T L + I D+
Sbjct: 717 VEAEIFKVLNSFINLKVSEKHPFFEEELTNAQIGTAITYKLKNM----TETKIIDFDESL 772
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+ +S S +A+ LIGK++GD ++ G E YEI ++
Sbjct: 773 PRDNEFISYESELAKNLIGKKVGDKFTIQGTFGFENEYEITEIT 816
>gi|78221459|ref|YP_383206.1| GreA/GreB family elongation factor [Geobacter metallireducens
GS-15]
gi|78192714|gb|ABB30481.1| GreA/GreB family elongation factor [Geobacter metallireducens
GS-15]
Length = 160
Score = 47.9 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/160 (16%), Positives = 59/160 (36%), Gaps = 12/160 (7%)
Query: 7 VTSKGF-----DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+T + + +L R A E + + +A+ Q
Sbjct: 1 MTKEQLLNQITAALDADLAVLATAARFAHEAATHEECIPDNKYDTTALEASYVAQGQ-AN 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV----GDQEADVQS 117
R E+ + V+ + + + ++E G+ + + G + AD +
Sbjct: 60 RAQEIRMALESYRVLALREFDDETPIRLTALVILEDEDGEARRVFLGPEAGGLKIADGEG 119
Query: 118 GL--VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ ++ SP+ R L+GK +GD + G KT+ +++V
Sbjct: 120 EIVVITPQSPLGRVLLGKVVGDQLQAGMGGTRKTFTVVEV 159
>gi|126642931|ref|YP_001085915.1| hypothetical protein A1S_2907 [Acinetobacter baumannii ATCC 17978]
Length = 1216
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 59 NEGRMAELENIITRAEVID-----ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
E + ++ N +V + ++ +I T L + I D+
Sbjct: 683 VEAEIFKVLNSFINLKVSEKHPFFEEELTNAQIGTAITYKLKNM----TETKIIDFDESL 738
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
+ +S S +A+ LIGK++GD ++ G E YEI ++
Sbjct: 739 PRDNEFISYESELAKNLIGKKVGDKFTIQGTFGFENEYEITEIT 782
>gi|291300432|ref|YP_003511710.1| hypothetical protein Snas_2942 [Stackebrandtia nassauensis DSM 44728]
gi|290569652|gb|ADD42617.1| conserved hypothetical protein [Stackebrandtia nassauensis DSM 44728]
Length = 1801
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 81 MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
+ D++A G+ + L + + + + + + +SP+ A+IG E+GD++
Sbjct: 1725 VDADQVAIGSRIRLRFLDGNREVHEGTIAEDGDGPT--HIPANSPLGVAIIGAEVGDVVP 1782
Query: 141 VNAPGGEKTYEILQV 155
+ + +E++ V
Sbjct: 1783 LLVDSRIRRFEVVAV 1797
>gi|331089360|ref|ZP_08338260.1| hypothetical protein HMPREF1025_01843 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330405423|gb|EGG84958.1| hypothetical protein HMPREF1025_01843 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 67
Score = 47.5 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 37/53 (69%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQ 56
+ +T +KI++E+ R+ ER +I+A+ EAR++GDLSEN EY AAK+ +
Sbjct: 2 REKLTKSDVEKIREEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKEK 54
>gi|146283249|ref|YP_001173402.1| transcription elongation factor [Pseudomonas stutzeri A1501]
gi|145571454|gb|ABP80560.1| transcription elongation factor [Pseudomonas stutzeri A1501]
Length = 158
Score = 47.5 bits (112), Expect = 7e-04, Method: Composition-based stats.
Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 15/154 (9%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELEN 68
+I L ++ + + A +EN Y R+ E+E
Sbjct: 8 QQIIATLEADREVAKAVLAATHEAATHAESKAENK-YDTRGLEAAYLADGQRRRLHEIET 66
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VS 121
+ + S R+ GA L+ + + + +G A ++ ++
Sbjct: 67 ALAAYRNLQAGVSSDGRVRVGA---LLCLDHDGAERWFFLGPDAAGLKLQHDGREILVIT 123
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
SP+ + L+G+EL D + + G + YE+LQ+
Sbjct: 124 ARSPLGQGLLGRELRDEVELRVHGQLQRYEVLQI 157
>gi|157375539|ref|YP_001474139.1| hypothetical protein Ssed_2402 [Shewanella sediminis HAW-EB3]
gi|157317913|gb|ABV37011.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
Length = 168
Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA---------------DVQSGLVSISSPI 126
I GA V ++++ ++ + +G DV+ +++ SSP+
Sbjct: 81 DETPIGLGALVVIMDEKDDEQSLF--IGPGAGGVKFSMKVDNQALAEDVEVMVITPSSPL 138
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
AL+G+ L D + +N K YEI+ V
Sbjct: 139 GNALMGRMLDDTVVINIGDNRKEYEIIAV 167
>gi|162457080|ref|YP_001619447.1| hypothetical protein sce8795 [Sorangium cellulosum 'So ce 56']
gi|161167662|emb|CAN98967.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
cellulosum 'So ce 56']
Length = 167
Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 10/151 (6%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
D++ +EL + R E + +A+ + +E R+ ++E + R
Sbjct: 20 DQLARELERSTERARDAASAVTHEENRAEGDKDMRATEASYVARGHSE-RVLQIEQALAR 78
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS-------SP 125
+ + + LVE SG ++ + + + SP
Sbjct: 79 LGAVTVRDFGPGAGIESSA--LVELESGKRRALYFLLPAAGGERIQFQGVELQTLATTSP 136
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ +L+G GD V P G +T+ I V
Sbjct: 137 LGASLLGLSEGDEAEVATPQGTRTHLIASVR 167
>gi|148549064|ref|YP_001269166.1| GreA/GreB family elongation factor [Pseudomonas putida F1]
gi|148513122|gb|ABQ79982.1| GreA/GreB family elongation factor [Pseudomonas putida F1]
Length = 258
Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 59/159 (37%), Gaps = 23/159 (14%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELE 67
I L A A A +++EN Y + R AE+
Sbjct: 109 LALIVATLAHDLDVLTRAAQTAYEAATAEENIAENK-YDTLGLEASYLATGQARRSAEIR 167
Query: 68 NIITRAEVI---DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG------ 118
+ + + D G +++ T +E G ++ + G + A ++ G
Sbjct: 168 QALVIYQQLLLRDYDPARGVQVSNLVT---LENEDGAQRRLFL-GPEAAGLKIGEGDGLV 223
Query: 119 -LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+++ SP+ + L+GK + D +++ G + I+ V+
Sbjct: 224 TVITPRSPLGQQLLGKRVDDEVNL----GAQVSFIVDVV 258
>gi|253698818|ref|YP_003020007.1| GreA/GreB family elongation factor [Geobacter sp. M21]
gi|251773668|gb|ACT16249.1| GreA/GreB family elongation factor [Geobacter sp. M21]
Length = 151
Score = 47.1 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/151 (17%), Positives = 54/151 (35%), Gaps = 13/151 (8%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
+++ +L R A E + + +A+ Q R E+ +
Sbjct: 7 ERLAADLAVLTNAARAAHEAATHEENIPDNKYDTLSLEASYVAQGQ-ANRAQEIRRALHA 65
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSP 125
++ + + +E G K + + G QE ++ + ++ SP
Sbjct: 66 YRSLEPQAFGAGQAIRLTALVTLEGEDGCGKTFFL-GPQEGGLKLEIEGEEVVVITPGSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ + LIGK GD + G+ YEI+ V
Sbjct: 125 MGQELIGKSAGDEARI----GKVAYEIVAVS 151
>gi|307293531|ref|ZP_07573375.1| transcription elongation factor GreA/GreB domain-containing protein
[Sphingobium chlorophenolicum L-1]
gi|306879682|gb|EFN10899.1| transcription elongation factor GreA/GreB domain-containing protein
[Sphingobium chlorophenolicum L-1]
Length = 156
Score = 47.1 bits (111), Expect = 9e-04, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 25/134 (18%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
VT++G ++++ + E + + + + K R+A
Sbjct: 28 WVTARGLRLTREKVEALEAVETEAMAEE--------------DAKKLKRELRYWRTRLAT 73
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
E + +AFG+ V+ +G +K +VGD EA+ G ++ S+P
Sbjct: 74 AELR---------PVPDAEAVAFGSRVTYR--LNGKEKRIDLVGDDEAEPAEGRIAFSAP 122
Query: 126 IARALIGKELGDII 139
+ARA++ E G+ +
Sbjct: 123 LARAMMDAEEGEAV 136
>gi|330808358|ref|YP_004352820.1| GreA-GreB family transcriptional regulator [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327376466|gb|AEA67816.1| putative Transcription factor, GreA-GreB family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 162
Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 25/154 (16%), Positives = 57/154 (37%), Gaps = 17/154 (11%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELE 67
DK++ +L R + E + + +Y + R+ E+
Sbjct: 13 LDKLKIDLD-----IAERAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIR 67
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------V 120
+T + + + R T+ +E G ++ + +G A ++ L +
Sbjct: 68 QALTLCQNLTLRPYDEQRGIQVGTLIGLEDEDGRQQ-WLFLGPDAAGLKVSLVGQPITVI 126
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+ SP+ R L+GK GD + + G + + + +
Sbjct: 127 TPRSPLGRGLLGKFEGDEVEIVVAGARQQFAVTE 160
>gi|77920154|ref|YP_357969.1| putative transcriptional elongation factor [Pelobacter carbinolicus
DSM 2380]
gi|77546237|gb|ABA89799.1| GreA/GreB family elongation factor [Pelobacter carbinolicus DSM
2380]
Length = 185
Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 46/103 (44%), Gaps = 9/103 (8%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-- 117
R E+ + + + + S + + +E G ++ + +G ++
Sbjct: 84 ANRAQEIRHALQAFRQLTLQRFSENSPIRQTALVQLEDEEGQRR-WLFLGPAAGGLRLSF 142
Query: 118 -----GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+++ +SP+ +AL+GK+ GD++ + G + YEI+ +
Sbjct: 143 GKREVMVITPASPLGKALLGKQCGDLVEIAGDVG-REYEIVSI 184
>gi|197103524|ref|YP_002128901.1| transcription elongation factor [Phenylobacterium zucineum HLK1]
gi|196476944|gb|ACG76472.1| transcription elongation factor [Phenylobacterium zucineum HLK1]
Length = 143
Score = 46.7 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISSPI 126
N ++RA ++ D + G+ V + + + ++V +EA + VS + I
Sbjct: 42 NELSRATLVQAGRAPADVVRLGSAVEYTDLTRRESRRIRLVLPREARPPALEPVSGT--I 99
Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQVL 156
AL+G GD+ AP GE ++ ++ V
Sbjct: 100 GAALLGLRPGDVFHWRAPSGELRSLQVDAVE 130
>gi|104780733|ref|YP_607231.1| hypothetical protein PSEEN1559 [Pseudomonas entomophila L48]
gi|95109720|emb|CAK14421.1| conserved hypothetical protein [Pseudomonas entomophila L48]
Length = 160
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 30/158 (18%), Positives = 66/158 (41%), Gaps = 21/158 (13%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSEN--------AEYQAAKELQNLNEGRMAE 65
+I L + R A A A +++EN A Y A + + E R
Sbjct: 9 RIIATLELDMEVLRRAAQTAYEAATAEENIAENKYDTLGLEASYLATGQARRTAEIR--- 65
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG------- 118
+ ++T +++ I G V+L +++ ++ +G + A ++ G
Sbjct: 66 -QALLTYQQMVLRDYDPARGIQVGCLVTLEDEDG--QQRLLFLGPEGAGLKIGEGDALVT 122
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+++ +P+ + L+GK + D +S+ G + I++V
Sbjct: 123 VITPRAPLGQQLVGKRIDDEVSLLVNGITQVQVIIEVT 160
>gi|148264888|ref|YP_001231594.1| hypothetical protein Gura_2848 [Geobacter uraniireducens Rf4]
gi|146398388|gb|ABQ27021.1| GreA/GreB family elongation factor [Geobacter uraniireducens Rf4]
Length = 161
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 56/135 (41%), Gaps = 10/135 (7%)
Query: 31 IKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGDRI 86
KA EA + + + +Y+ + R E++ + + + + + D
Sbjct: 26 AKAAHEASIHEENIPDNKYETLSLEASYVAQGQANRAQEIKIALDTYKKLSLQHFAEDVP 85
Query: 87 AFGATVSLVEKNSGDKKNYQIVGD------QEADVQSGLVSISSPIARALIGKELGDIIS 140
+ +E G +K I + ++ V++ +++ +SP+ LIGK GD +
Sbjct: 86 IRLTALVTLEAGDGVEKTVFIGPEAGGLKVEDGGVETIVITPNSPLGEGLIGKIAGDSVE 145
Query: 141 VNAPGGEKTYEILQV 155
V + +EI++V
Sbjct: 146 VGRGNAKSVFEIVEV 160
>gi|84388970|ref|ZP_00991178.1| hypothetical protein V12B01_09821 [Vibrio splendidus 12B01]
gi|84377034|gb|EAP93906.1| hypothetical protein V12B01_09821 [Vibrio splendidus 12B01]
Length = 157
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 66/149 (44%), Gaps = 14/149 (9%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73
++L R + + +AI A + E+ A E L G R+ E E+ I
Sbjct: 12 EQLESRLRIAQSATQRAIDAATDEETVPEHKYDTLALEASYLAHGQAVRVQECEDDIQCY 71
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-------QSGLVSISSPI 126
++ +RI + V +++++ D+ + +G + + + +V+ ++P
Sbjct: 72 R--NLVLRDSERITVSSYVVVIDEH--DQYKHFFMGPRVGGLSVTWNENEIAIVTENAPF 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GKE+GD I + YE++ +
Sbjct: 128 GQALMGKEVGDEIEFKVADKQFCYEVISI 156
>gi|325168696|ref|YP_004280486.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3]
gi|325064419|gb|ADY68108.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3]
Length = 179
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 18/92 (19%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
+L + + V+ +S D + G+ ++ G ++ +V E +G +S+ +
Sbjct: 71 DLSEKLENSWVLADEQVSLDTVCLGS--TVSYDVEGQQRQVTLVLPNEVLADAGRLSVLT 128
Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQV 155
P+ AL+G + G N+ G + +++V
Sbjct: 129 PVGVALLGLKPGQRGEWNSRDGHRHQLTVVRV 160
>gi|86145686|ref|ZP_01064016.1| hypothetical protein MED222_01992 [Vibrio sp. MED222]
gi|218708725|ref|YP_002416346.1| hypothetical protein VS_0704 [Vibrio splendidus LGP32]
gi|85836657|gb|EAQ54783.1| hypothetical protein MED222_01992 [Vibrio sp. MED222]
gi|218321744|emb|CAV17699.1| hypothetical protein VS_0704 [Vibrio splendidus LGP32]
Length = 157
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 29/149 (19%), Positives = 59/149 (39%), Gaps = 14/149 (9%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRA 73
++L R + + +AI A + E+ A E L G R+ E E I
Sbjct: 12 EQLESRLRIAQSATQRAIDAATDEETVPEHKYDTLALEASYLAHGQAVRVQECEGDIQCY 71
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPI 126
+ + ++ V + D+ + +G + + + +V+ ++P
Sbjct: 72 RNLVLRDSEKITVSSYVVV----IDEHDQYKHFFMGPRVGGLSVTWNNNEVAIVTENAPF 127
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
+AL+GKE+GD I + YE++ +
Sbjct: 128 GQALMGKEVGDEIEFKVADKQFCYEVISI 156
>gi|289759954|ref|ZP_06519332.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289715518|gb|EFD79530.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length = 40
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL G + GD ++ + P G ++L V
Sbjct: 5 SPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 37
>gi|215448134|ref|ZP_03434886.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
T85]
Length = 42
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
SP+ +AL G + GD ++ + P G ++L V
Sbjct: 7 SPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 39
>gi|260466739|ref|ZP_05812925.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum
WSM2075]
gi|259029469|gb|EEW30759.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum
WSM2075]
Length = 180
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 58 LNEGRMAE-------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
+ E R A LE+ ++ ++V+ + ++ D + + ++G + +V D
Sbjct: 19 MLERRRAFADPIVHMLEHKLSSSDVVPVDSIDPDIVTLNSRAVFC-IDAGPAETRTLVQD 77
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+ +S+++ ++G G SV P G + I VL+
Sbjct: 78 EVHGPVGSSLSVATRRGLCVLGMAQGQTASVEYPDGRRESIRIKAVLY 125
>gi|323497951|ref|ZP_08102960.1| hypothetical protein VISI1226_07912 [Vibrio sinaloensis DSM 21326]
gi|323316996|gb|EGA69998.1| hypothetical protein VISI1226_07912 [Vibrio sinaloensis DSM 21326]
Length = 164
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 11/147 (7%)
Query: 19 LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAEV 75
L ++Q + + +AI A + E+ A E L G R+ E E I ++
Sbjct: 20 LEKKRQVAQSSVQRAIESATDEETVPEHKYDTLALEAAYLAHGQAMRLQECEQEIR--QI 77
Query: 76 IDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-----LVSISSPIARA 129
D+ ++ + G+ V + + + + + V G LV+ SP+ RA
Sbjct: 78 TDLELPVAPSNVVMGSLVYVSDLDEVEHCYFMAPCSGGLKVTFGETEVTLVTFESPLGRA 137
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156
L G+ GD +Y+I +
Sbjct: 138 LKGRMSGDEAEYKVADTMFSYQIETIS 164
>gi|157961823|ref|YP_001501857.1| GreA/GreB family elongation factor [Shewanella pealeana ATCC
700345]
gi|157846823|gb|ABV87322.1| GreA/GreB family elongation factor [Shewanella pealeana ATCC
700345]
Length = 170
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 12/112 (10%)
Query: 55 LQNLNEGRMAELENI---ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
+ + E + + +I+ ++ G V L+++N K Y VG
Sbjct: 61 RVAQCQADIRAFEAMFTRLNSNSIIESKGTKEPKVELGRLVLLMDENG--KNQYLFVGPG 118
Query: 112 EADVQS-------GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
++ +V++ SP+ + K GD S+N G ++ YEI++V
Sbjct: 119 AGGLKIAYEHDSIMVVTLESPLGITMANKRQGDDFSLNVAGNKREYEIIEVK 170
>gi|167032442|ref|YP_001667673.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1]
gi|166858930|gb|ABY97337.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1]
Length = 156
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 25/159 (15%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN--------AEYQAAKELQNLNEGRM 63
I L A A A +++EN A Y A + + E R
Sbjct: 7 LALIVATLEHDLDVLTRAAQTAYEAATAEENIAENKYDTLGLEASYLATGQARRSGEIRQ 66
Query: 64 AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----- 118
A ++ +++ + V+L ++ G ++ ++G + A ++ G
Sbjct: 67 A----LLIYQQLLLRDYDPARGVQVSNLVTLEDELGGQRR--LLLGPEAAGLKIGEGDGL 120
Query: 119 --LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+++ SP+ + L+GK++ D +++ G++ I+ V
Sbjct: 121 VTVITPRSPLGQQLMGKKIDDEVNL----GQQLLFIVDV 155
>gi|26988584|ref|NP_744009.1| hypothetical protein PP_1854 [Pseudomonas putida KT2440]
gi|24983358|gb|AAN67473.1|AE016374_5 conserved hypothetical protein [Pseudomonas putida KT2440]
Length = 156
Score = 46.0 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 25/142 (17%), Positives = 54/142 (38%), Gaps = 19/142 (13%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELE 67
I L A A A +++EN Y + R AE+
Sbjct: 7 LALIVATLEHDLDVLTRAAQTAYEAATAEENIAENK-YDTLGLEASYLATGQARRSAEIR 65
Query: 68 NIITRAEVI---DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG------ 118
+ + + D G +++ V+L ++ G ++ + +G + A ++ G
Sbjct: 66 QALVIYQQLLLRDYDPARGVQVS--NLVTLENEDGGQRRLF--LGPEAAGLKIGEGDGLV 121
Query: 119 -LVSISSPIARALIGKELGDII 139
+++ SP+ + L+GK + D +
Sbjct: 122 TVITPRSPLGQQLLGKRVDDEV 143
>gi|325276019|ref|ZP_08141838.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51]
gi|324098851|gb|EGB96878.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51]
Length = 158
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 21/157 (13%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENA------EYQAAKELQNLNEGRMAE 65
+I L A A A +++EN E Q ++ +
Sbjct: 9 LAQIVATLEHDLDVLTRAAQTAYEAATAEENIAENKYDTLGLEASYLATGQARRSAQIRQ 68
Query: 66 LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSG 118
I + + D G +++ T +E +G+++ + G + A D
Sbjct: 69 ALLIYQQLLLRDYDPARGVQVSNLVT---LEDEAGEQRRVFL-GPEAAGLKIAAADGLVT 124
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+++ SP+ + L+GK + D +S+ G + ++ V
Sbjct: 125 VITPRSPLGQVLLGKRVDDEVSL----GVQVLFVVDV 157
>gi|153001961|ref|YP_001367642.1| GreA/GreB family elongation factor [Shewanella baltica OS185]
gi|151366579|gb|ABS09579.1| GreA/GreB family elongation factor [Shewanella baltica OS185]
Length = 133
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/77 (18%), Positives = 33/77 (42%)
Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
+ D++ G + LV + ++V + +G S+ S + +L+G+ G++
Sbjct: 48 DTASDKVTVGREIRLVNLQDQQEYQIELVYPPKHKPSAGRFSVISDLGVSLLGRSKGELA 107
Query: 140 SVNAPGGEKTYEILQVL 156
V+ G + I +
Sbjct: 108 EVSILGKPVLFMINDIS 124
>gi|260062081|ref|YP_003195161.1| hypothetical protein RB2501_10827 [Robiginitalea biformata
HTCC2501]
gi|88783643|gb|EAR14814.1| hypothetical protein RB2501_10827 [Robiginitalea biformata
HTCC2501]
Length = 149
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 9/122 (7%)
Query: 43 LSENAEYQAAKELQNLN--------EGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94
+ E EY A N + L+ + A ++D D + V+L
Sbjct: 8 VFERQEYDALLMSLEANRVYDDYAHQHAARLLKRNMASALILDQGECPDDVVRPDVWVTL 67
Query: 95 VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
S ++ ++ + G +S+ S + ++IG+ GD+I PG + I +
Sbjct: 68 KGVPS-YRRTVRLASSGKPITTPGDISVISALGASIIGRSEGDVILFGQPGNTMSLTIAK 126
Query: 155 VL 156
+
Sbjct: 127 IS 128
>gi|212635479|ref|YP_002312004.1| transcription elongation factor [Shewanella piezotolerans WP3]
gi|212556963|gb|ACJ29417.1| Transcription elongation factor [Shewanella piezotolerans WP3]
Length = 190
Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVSISSPIARALIGKELGD 137
+IA G V LV++ D + +G ++ L++ SPI L+ +E+GD
Sbjct: 114 QIALGHLVELVDEQ--DIVSLLFMGPNAGGLKIDFAKCNFMLITPQSPIGEKLMSREVGD 171
Query: 138 IISVNAPGGEKTYEILQV 155
+S+N G YEI+ +
Sbjct: 172 EVSINVAGKRHHYEIVGI 189
>gi|254427436|ref|ZP_05041143.1| hypothetical protein ADG881_666 [Alcanivorax sp. DG881]
gi|196193605|gb|EDX88564.1| hypothetical protein ADG881_666 [Alcanivorax sp. DG881]
Length = 128
Score = 45.6 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 3/124 (2%)
Query: 32 KAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGAT 91
A+ E + Y A L L+ R+ + I ++ A G
Sbjct: 2 AALMERLSLCRYGYGKRYLAKNPLFFLSPVRLMIVMEKIEMLRGVE---RELAAAAVGDR 58
Query: 92 VSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYE 151
VSL ++ ++ + + + +S+ SP+ AL+G G +++VN G Y
Sbjct: 59 VSLFSFEDEEQMSFTLAEAGKRSLGDKDISVLSPLGAALLGALPGAVVNVNFLGHGHRYL 118
Query: 152 ILQV 155
+L+V
Sbjct: 119 LLKV 122
>gi|315126486|ref|YP_004068489.1| hypothetical protein PSM_A1405 [Pseudoalteromonas sp. SM9913]
gi|315015000|gb|ADT68338.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
Length = 158
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 29/161 (18%), Positives = 70/161 (43%), Gaps = 9/161 (5%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K VT ++++L + + A E + +AA Q +
Sbjct: 1 MNKAHVTEHLRFALEEQLNTAKIAAQTAHDTATHEESIAETQYDTLGLEAAYLAQGHAD- 59
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQSG 118
R+ E I E I ++G +++ +E ++G +K + + G D++
Sbjct: 60 RVNECYKEIQLFEAIYNDVVTGTIAV--SSLVCLEDDAGTQKWFYLGPAAGGLTVDIKGT 117
Query: 119 LVSISS---PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ + + P+ + L+GK++ D +S+ + +Y++++VL
Sbjct: 118 TIQVLTSGAPLGQQLLGKQVDDEVSLTLGDVKHSYDVVKVL 158
>gi|126173156|ref|YP_001049305.1| GreA/GreB family elongation factor [Shewanella baltica OS155]
gi|125996361|gb|ABN60436.1| GreA/GreB family elongation factor [Shewanella baltica OS155]
Length = 133
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 33/77 (42%)
Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
+ D++ G + LV + ++V + +G S+ S + +L+G+ G++
Sbjct: 48 DTANDKVTVGREIRLVNLQDQQEYQIELVYPPKHKPSAGRFSVISDLGVSLLGRSKGELA 107
Query: 140 SVNAPGGEKTYEILQVL 156
V+ G + I V
Sbjct: 108 EVSILGKPVLFMIKDVS 124
>gi|160876682|ref|YP_001555998.1| GreA/GreB family elongation factor [Shewanella baltica OS195]
gi|160862204|gb|ABX50738.1| GreA/GreB family elongation factor [Shewanella baltica OS195]
gi|315268882|gb|ADT95735.1| transcription elongation factor GreA/GreB domain-containing protein
[Shewanella baltica OS678]
Length = 133
Score = 45.2 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 34/77 (44%)
Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
++ D++ G + LV + ++V + +G S+ S + +L+G+ G++
Sbjct: 48 DVASDKVTVGREIRLVNLQDQQEYQIELVYPPKHKPNAGRFSVISDLGVSLLGRSKGELA 107
Query: 140 SVNAPGGEKTYEILQVL 156
V+ G + I V
Sbjct: 108 EVSILGKPVLFMIKDVS 124
>gi|313499982|gb|ADR61348.1| GreA/GreB family elongation factor [Pseudomonas putida BIRD-1]
Length = 156
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 23/156 (14%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60
+DK + I L A A A +++EN Y +
Sbjct: 1 MDKPYL----LALIVATLEHDLDVLTRAAQTAYEAATAEENIAENK-YDTLGLEASYLAT 55
Query: 61 ---GRMAELENIITRAEVI---DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
R AE+ + + + D G +++ V+L ++ G ++ + +G + A
Sbjct: 56 GQARRSAEIRQALVIYQQLLLRDYDPARGVQVS--NLVTLENEHGGQRRLF--LGPEAAG 111
Query: 115 VQSG-------LVSISSPIARALIGKELGDIISVNA 143
++ G +++ SP+ + L+GK + D +++ A
Sbjct: 112 LKIGEGDGLVTVITPRSPLGQQLLGKRVDDEVNLGA 147
>gi|146305505|ref|YP_001185970.1| GreA/GreB family elongation factor [Pseudomonas mendocina ymp]
gi|145573706|gb|ABP83238.1| GreA/GreB family elongation factor [Pseudomonas mendocina ymp]
Length = 160
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 21/166 (12%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60
++K + ++Q +L + A A +++EN Y
Sbjct: 1 MNKTLLLQAVLSQLQADLEQANL----AALSAHETATHEENVAENK-YDTLGLEAAYLAS 55
Query: 61 ---GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ- 116
R+ EL + + + + L+ G ++ + +G Q A ++
Sbjct: 56 GQARRVEELRQTLITWRQLRPRPFDEAQGIELGALVLLAGEDGHEQ-WLFLGPQGASMKL 114
Query: 117 ------SGLVSISSPIARALIGKELGDIISVNAPGGEK--TYEILQ 154
++ ++P+ R L+GK GD +N P G++ +E+L
Sbjct: 115 QHAGRSIQVLGNAAPLGRLLLGKRPGD--EINLPMGKRLQLFEVLA 158
>gi|270602105|ref|ZP_06221570.1| transcription elongation factor GreA [Haemophilus influenzae
HK1212]
gi|270318242|gb|EFA29436.1| transcription elongation factor GreA [Haemophilus influenzae
HK1212]
Length = 33
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
IAR LIGKEL D +++ PGG ++I++V +I
Sbjct: 1 IARGLIGKELDDTVNITTPGGIVEFDIIEVNYI 33
>gi|167624223|ref|YP_001674517.1| GreA/GreB family elongation factor [Shewanella halifaxensis
HAW-EB4]
gi|167354245|gb|ABZ76858.1| GreA/GreB family elongation factor [Shewanella halifaxensis
HAW-EB4]
Length = 165
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-------GLVSISSPIARAL 130
+S ++ G V L++ + K Y VG ++ +V+++SP+ RA+
Sbjct: 82 VSETRAPKVGLGKLVELMDADG--KSQYLFVGPGAGGLKVTCDEYSVMIVTLASPLGRAM 139
Query: 131 IGKELGDIISVNAPGGEKTYEILQVL 156
+ K GD S+ G + YEI+ V
Sbjct: 140 MSKLQGDEFSLQVAGSRRDYEIVMVS 165
>gi|217974535|ref|YP_002359286.1| GreA/GreB family elongation factor [Shewanella baltica OS223]
gi|217499670|gb|ACK47863.1| GreA/GreB family elongation factor [Shewanella baltica OS223]
Length = 133
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 33/77 (42%)
Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
+ D++ G + LV + ++V + +G S+ S + +L+G+ G++
Sbjct: 48 DTASDKVTVGREIRLVNLQDQQEYQIELVYPPKHKPSAGRFSVISDLGVSLLGRSKGELA 107
Query: 140 SVNAPGGEKTYEILQVL 156
V+ G + I V
Sbjct: 108 EVSILGKPVLFMIKDVS 124
>gi|223934353|ref|ZP_03626274.1| conserved hypothetical protein [bacterium Ellin514]
gi|223896816|gb|EEF63256.1| conserved hypothetical protein [bacterium Ellin514]
Length = 159
Score = 44.8 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 27/152 (17%), Positives = 58/152 (38%), Gaps = 12/152 (7%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
D++ + L+ ++ R +A E +EN E L G+ +++ I+
Sbjct: 12 DELTKSLQVLEKAARASHAEATHE----SSKAENKYDTRGLEAAYLAGGQARQVKEIMES 67
Query: 73 AEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISS 124
++ + + + +LVE + +N +G + ++ ++ S
Sbjct: 68 IKIYEAMAPRNFGAEEPIDLAALVELEADGSRNIYFIGPRSGGLEVNYARKEIIVITPQS 127
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+ LIGK+ G G Y I+ V+
Sbjct: 128 PLGSNLIGKKKGQRWKTQVGGNTINYHIVSVV 159
>gi|289624634|ref|ZP_06457588.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289651140|ref|ZP_06482483.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330870018|gb|EGH04727.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
aesculi str. 0893_23]
Length = 118
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 63 MAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
+ L+ + RA +V+ + + + V E+ SG + ++V Q+A G VS
Sbjct: 31 IQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQDAGAD-GTVS 89
Query: 122 ISSPIARALIGKELGD 137
+ +P+ AL+G ++G
Sbjct: 90 VLAPMGSALLGLQVGQ 105
>gi|260771051|ref|ZP_05879979.1| hypothetical protein VFA_004117 [Vibrio furnissii CIP 102972]
gi|260613940|gb|EEX39131.1| hypothetical protein VFA_004117 [Vibrio furnissii CIP 102972]
Length = 138
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
+ RIA G TV LV+ + +V + SG ++ S + AL+G+ D++ +
Sbjct: 46 NTTRIALGDTVHLVDTERYHQYRMTLVASHQHQPLSGQLAWDSYLGSALMGRARDDVLEL 105
Query: 142 NAPGGEKTYEILQVLW 157
G + Y I ++++
Sbjct: 106 RILGRSRRYAITEIVY 121
>gi|24372678|ref|NP_716720.1| putative transcription elongation factor [Shewanella oneidensis
MR-1]
gi|24346727|gb|AAN54165.1|AE015553_10 conserved hypothetical protein [Shewanella oneidensis MR-1]
Length = 128
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 34/77 (44%)
Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
S + +++ G V LV + + ++V ++G S+ S + +L+G+ G+
Sbjct: 47 SDDTVEKVTLGREVVLVNQQDQQEYRVELVYPPRHKPRAGRYSVISDLGVSLLGRSKGEY 106
Query: 139 ISVNAPGGEKTYEILQV 155
VN G + + +
Sbjct: 107 AEVNILGKPVLFMVKDI 123
>gi|330501417|ref|YP_004378286.1| GreA/GreB family elongation factor [Pseudomonas mendocina NK-01]
gi|328915703|gb|AEB56534.1| GreA/GreB family elongation factor [Pseudomonas mendocina NK-01]
Length = 160
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 58/167 (34%), Gaps = 21/167 (12%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60
+DK + +Q +L EA + + +Y
Sbjct: 1 MDKNLLLQDVLTHLQADLEQASLAALTA-----HEAATHEENVAENKYDTLGLEAAYLAS 55
Query: 61 ---GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ- 116
R+ EL + + + + L+ G ++ + +G Q A ++
Sbjct: 56 GQARRVEELRQTLITWRQLRPRPFDAAQGIELGALILLASEDGHEQ-WLFLGPQGASMKL 114
Query: 117 ------SGLVSISSPIARALIGKELGDIISVNAPGGEK--TYEILQV 155
++ ++P+ R L+GK GD +N P G++ +E+L V
Sbjct: 115 QHAGQSIQVLGNAAPLGRLLLGKHPGD--EINLPMGQRLQAFEVLTV 159
>gi|222055636|ref|YP_002537998.1| GreA/GreB family elongation factor [Geobacter sp. FRC-32]
gi|221564925|gb|ACM20897.1| GreA/GreB family elongation factor [Geobacter sp. FRC-32]
Length = 159
Score = 44.4 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 11/135 (8%)
Query: 31 IKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGDRI 86
K EA + + + +Y + R +E+ + + + + +M G I
Sbjct: 25 AKTAHEAATHSENLPDNKYDTLALEASYVAQGQANRASEIRQAMEVYKQLKLLSMDGGEI 84
Query: 87 AFGATVSLVEKNSGDKKNYQIV----GDQEADVQSGLVSIS--SPIARALIGKELGDIIS 140
A V L E G K I G + A ++ +V I+ SP+ L+GK +GD +
Sbjct: 85 RLTALVRL-EAEDGASKTIFIGPLEGGLKIAFGRAEVVVITPGSPLGSELMGKTIGDAVQ 143
Query: 141 VNAPGGEKTYEILQV 155
V YEI +V
Sbjct: 144 VGIGPNRIEYEIAEV 158
>gi|54303094|ref|YP_133087.1| hypothetical protein PBPRB1420 [Photobacterium profundum SS9]
gi|46916522|emb|CAG23287.1| conserved hypothetical protein [Photobacterium profundum SS9]
Length = 171
Score = 44.4 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 13/160 (8%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK + +++ L Q ++A + A +++EN A E L G
Sbjct: 12 MDKTLL----LEQMITALEETHQGAVEAALRAYNTATNDENVAENQYDTLALEASYLAHG 67
Query: 62 ---RMAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQI-----VGDQE 112
R+AE E I + ID + + G + L++++ ++ + + +
Sbjct: 68 QAQRVAECEADILAFKKIDMAADTEKKVVTLGCLIQLIDEDDNNRYVFFAPSAGGLKIRF 127
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
D +V+ +SP+ ALIG+EL D ++V+ YEI
Sbjct: 128 DDKDIIVVTPTSPLGEALIGRELHDDVNVHIGSQIINYEI 167
>gi|315178622|gb|ADT85536.1| hypothetical protein/transcription elongation factor GreA [Vibrio
furnissii NCTC 11218]
Length = 138
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 37/76 (48%)
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
+ RIA G TV LV+ + +V + SG ++ S + AL+G+ D++ +
Sbjct: 46 NATRIALGDTVHLVDTERYHQYRMTLVASHQHQPLSGQLAWDSYLGSALMGRARDDVLEL 105
Query: 142 NAPGGEKTYEILQVLW 157
G + Y I ++++
Sbjct: 106 RILGRSRRYAITEIVY 121
>gi|325284349|ref|YP_004256889.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP]
gi|324316413|gb|ADY27526.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP]
Length = 174
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 15/165 (9%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
I +T G +Q L Q+ + A A + + E R+
Sbjct: 3 IVMTPLGLRALQS-LIQTQEARLTELRAAHRRALEDCRDDTDGSIGQSAAACTEAETRLL 61
Query: 65 ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD---KKNYQIVGDQEADV------ 115
+LE+ + A + + SG+++ G ++ G IV EA++
Sbjct: 62 QLEDALEGAVL---AQPSGEQVEPGTVATVSASVDGRPVRTFKVLIVSALEAELLGRSVG 118
Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGG--EKTYEILQVLWI 158
+ S +SPI AL+ + G+ +N GG ++ +I Q+ +
Sbjct: 119 DLQVASENSPIGMALLAAQEGNRCLLNLGGGRPQQWLKIQQIETV 163
>gi|312131674|ref|YP_003999014.1| hypothetical protein Lbys_2999 [Leadbetterella byssophila DSM
17132]
gi|311908220|gb|ADQ18661.1| hypothetical protein Lbys_2999 [Leadbetterella byssophila DSM
17132]
Length = 163
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 62/163 (38%), Gaps = 26/163 (15%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
DKI + + + Q+L+ IK + +A S + NE
Sbjct: 16 DKIKILQEAYSHFSQKLKDLDSH-----IKTVQDAANQESKSSVGDKYETGRAMAQNEVF 70
Query: 63 MAELENIITRAEVIDISTM----SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA---DV 115
M + + R EV + ++ S D + G+ V + ++G
Sbjct: 71 MLKTQFESLRIEVEKLGSLLLSDSKDTASSGSLVK-------TSQGQFLLGPALGKWKSE 123
Query: 116 QSGL---VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ G+ +S+ +P+ AL GK+ GD VN ++ +IL +
Sbjct: 124 EKGVFYFISLDAPLGHALQGKKKGDSFEVN----QRKDKILDI 162
>gi|117919375|ref|YP_868567.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3]
gi|117611707|gb|ABK47161.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3]
Length = 128
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 34/78 (43%)
Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
S + D++ G + LV + + ++V ++G S+ S + +L+G+ G+
Sbjct: 47 SEETQDKVTVGREILLVNQQDQQEYRIELVYPPRHKPRAGRYSVISDLGVSLLGRTKGEY 106
Query: 139 ISVNAPGGEKTYEILQVL 156
VN G + + +
Sbjct: 107 AEVNILGKPVLFMVKDIT 124
>gi|224370462|ref|YP_002604626.1| GreA2 [Desulfobacterium autotrophicum HRM2]
gi|223693179|gb|ACN16462.1| GreA2 [Desulfobacterium autotrophicum HRM2]
Length = 95
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 120 VSISSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
+SI +P+ AL+G +GD I P GG I ++++
Sbjct: 47 ISILAPVGSALLGLSIGDKIEWPKPGGGNLKVRITEIIY 85
>gi|304410489|ref|ZP_07392107.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
gi|307304581|ref|ZP_07584331.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
gi|304350973|gb|EFM15373.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
gi|306911983|gb|EFN42407.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
Length = 133
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 29/62 (46%)
Query: 80 TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
++ D++ G + LV + ++V + +G S+ S + +L+G+ G++
Sbjct: 48 DVASDKVTVGREIRLVNLQDQQEYQIELVYPPKHKPSAGRFSVISDLGVSLLGRSKGELA 107
Query: 140 SV 141
V
Sbjct: 108 EV 109
>gi|197116582|ref|YP_002137009.1| transcription elongation factor GreA/GreB domain-containing protein
[Geobacter bemidjiensis Bem]
gi|197085942|gb|ACH37213.1| transcription elongation factor GreA/GreB domain protein [Geobacter
bemidjiensis Bem]
Length = 151
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 56/151 (37%), Gaps = 13/151 (8%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
+++ +L R A E + + +A+ Q R E+ +
Sbjct: 7 ERLATDLAVLTNAARAAHEAATHEENIPDNKYDTLSLEASYVAQGQ-ANRAQEIRRALHA 65
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSP 125
+++ S + + +E G K + I G QE ++ + +++ SP
Sbjct: 66 YRSLELQEFSAGQAIRLTALVTLEGEDGGGKTFFI-GPQEGGLKLEIEGKEVVVITLGSP 124
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ + LIGK GD + G YEI+ V
Sbjct: 125 MGQELIGKSAGDEARI----GRVAYEIVAVS 151
>gi|42524974|ref|NP_970354.1| hypothetical protein Bd3631 [Bdellovibrio bacteriovorus HD100]
gi|39577185|emb|CAE81008.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
Length = 159
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 63/167 (37%), Gaps = 22/167 (13%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK + + I+ +L + + I A +EN EY +
Sbjct: 1 MDKKKL----IEAIRTQLVADMTALKEAVKATIDAATNEESKAEN-EYDTRGLEASYLAR 55
Query: 62 ----RMAELEN---IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI------V 108
R+A++E ++ V D G ++ + +++G + I V
Sbjct: 56 GQAKRIADIEEVLLLLKHLSVRDFGPNDG----ISSSAVIEVEHNGKTSFFFILAKGGGV 111
Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
Q +V+ +SP+ AL+ +++G + V + Y+I+ +
Sbjct: 112 SVQFEGKTIQVVTPNSPLGEALLDQKVGGVAVVENGPQVREYDIINI 158
>gi|70731618|ref|YP_261359.1| hypothetical protein PFL_4267 [Pseudomonas fluorescens Pf-5]
gi|68345917|gb|AAY93523.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
Length = 139
Score = 43.7 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 17/139 (12%), Positives = 51/139 (36%), Gaps = 12/139 (8%)
Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGD 84
R + E + + +Y + R+ E+ + + + +
Sbjct: 2 RAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQALGLWQNLSLRPYDPQ 61
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-------GLVSISSPIARALIGKELGD 137
+ + +E +G ++ + +G A ++ +++ SP+ ++L+GK D
Sbjct: 62 KGIQIGALLGLEDENGHEQ-WLFLGPDGAGLKVYVVGQLVTVITPRSPLGKSLLGKFEDD 120
Query: 138 IISVNAPGGEKTYEILQVL 156
+ + G + + + +V
Sbjct: 121 EVEIVVAGARQQFTVTEVR 139
>gi|260775310|ref|ZP_05884207.1| transcription elongation factor [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608491|gb|EEX34656.1| transcription elongation factor [Vibrio coralliilyticus ATCC
BAA-450]
Length = 158
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 11/134 (8%)
Query: 32 KAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS--GDRIAFG 89
+AI A + E+ A E L G+ ++ +V+ + +RI G
Sbjct: 27 RAIESATDEETVPEHKYDTLALEASYLAHGQAMRVQECERDLDVMAHLQLPQQSERITLG 86
Query: 90 ATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVSISSPIARALIGKELGDIISVN 142
+ VSL++ + + V ++ LV+ SP+ A+ GK +GD +
Sbjct: 87 SLVSLIDLEDNRR--WFFVAPCTGGLKVQHQQQEVMLVTFDSPLGFAMKGKSMGDEVEYQ 144
Query: 143 APGGEKTYEILQVL 156
+YE+ ++
Sbjct: 145 VATTTFSYEVDTII 158
>gi|77460223|ref|YP_349730.1| GreA/GreB family elongation factor [Pseudomonas fluorescens Pf0-1]
gi|77384226|gb|ABA75739.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
Length = 160
Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats.
Identities = 23/156 (14%), Positives = 57/156 (36%), Gaps = 17/156 (10%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG----RMAELE 67
DK++ +L R + E + + +Y + R+ E+
Sbjct: 11 LDKLRVDLD-----IAERAAQTAYETATHEENIAENKYDTLGLEASYLAAGQAKRVEEIR 65
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------V 120
+ + + + R + +E G ++ + + A V+ + +
Sbjct: 66 QSLALCQNLTLRAYDAQRGIEVGALLGLEDEKGREQ-WLFLAPDAAGVKVDVVGQPITVI 124
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ SP+ ++L+GK GD + + G + + + +VL
Sbjct: 125 TPRSPLGKSLLGKFEGDEVEILVAGTRQQFAVTEVL 160
>gi|149200475|ref|ZP_01877489.1| hypothetical protein LNTAR_13427 [Lentisphaera araneosa HTCC2155]
gi|149136437|gb|EDM24876.1| hypothetical protein LNTAR_13427 [Lentisphaera araneosa HTCC2155]
Length = 156
Score = 43.7 bits (102), Expect = 0.010, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 10/145 (6%)
Query: 19 LRWRQQEERPRIIKAISEARAYGDLSEN---AEYQA-AKELQNLNEGRMA---ELENIIT 71
L + + + AI+E EN ++Y + E L EG++ ELE I
Sbjct: 11 LERLRGDY-QESLDAINETAETATHEENIAKSKYDTKSIEAAYLVEGQIKRNGELEAEIA 69
Query: 72 RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSISSPIARA 129
+ + I + A + + +E SG + + + G+ ++ SP+ +A
Sbjct: 70 AYQAMRIRSFGKKSRALLSALIKLEDESGQTIDLFMGPQAGGMIIEGVQVITPPSPLGQA 129
Query: 130 LIGKELGDIISVNAPGGEKTYEILQ 154
L+GK GD +S+ G + Y +L
Sbjct: 130 LLGKYCGDEVSLELEGKIQKYRVLD 154
>gi|113969271|ref|YP_733064.1| GreA/GreB family elongation factor [Shewanella sp. MR-4]
gi|114046468|ref|YP_737018.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
gi|113883955|gb|ABI38007.1| GreA/GreB family elongation factor [Shewanella sp. MR-4]
gi|113887910|gb|ABI41961.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
Length = 128
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 35/77 (45%)
Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
S + D++ G + LV ++ + ++V ++G S+ S + +L+G+ G+
Sbjct: 47 SEETLDKVTVGREILLVNQHDQQEYRIELVYPPRHKPRAGRYSVISDLGVSLLGRTKGEY 106
Query: 139 ISVNAPGGEKTYEILQV 155
VN G + + +
Sbjct: 107 AEVNILGKPVLFIVKDI 123
>gi|119946279|ref|YP_943959.1| GreA/GreB family elongation factor [Psychromonas ingrahamii 37]
gi|119864883|gb|ABM04360.1| GreA/GreB family elongation factor [Psychromonas ingrahamii 37]
Length = 160
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 13/135 (9%)
Query: 32 KAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELENIITRAEVIDISTMS-GDRIA 87
+A + A +++EN A E L +G R+AE + + ++IS S +
Sbjct: 27 RAYNTATNNENVAENKYDTLALEASYLAQGQAQRVAECAQDLIAFQQLNISAASLKLSVC 86
Query: 88 FGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVSISSPIARALIGKELGDIIS 140
GA V L + + +K Y G ++ +V+ SP+ A+ + +GD IS
Sbjct: 87 LGALVLLHDLDDNEK--YVFYGPSAGGLKVQFAEKDIVVVTPGSPLGAAIKDRSVGDEIS 144
Query: 141 VNAPGGEKTYEILQV 155
+ YEI ++
Sbjct: 145 LFIGNKVIEYEIAEI 159
>gi|95929275|ref|ZP_01312019.1| GreA/GreB family elongation factor [Desulfuromonas acetoxidans DSM
684]
gi|95134773|gb|EAT16428.1| GreA/GreB family elongation factor [Desulfuromonas acetoxidans DSM
684]
Length = 159
Score = 43.3 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG- 118
R +L+ + + ++I + + + + +E G + + G + ++
Sbjct: 58 ANRAQQLKKALDVYKKLEIQSFAPYEPFYLTALVGIEYEDGRLRQLFL-GPEAGGLKVDC 116
Query: 119 ------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+++ SP+ AL+GK++GD++S + +K +EI+ V
Sbjct: 117 DGENVVVITPGSPLCSALLGKQVGDVVS-SGRATDKEFEIISV 158
>gi|220926703|ref|YP_002502005.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS
2060]
gi|219951310|gb|ACL61702.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS
2060]
Length = 147
Score = 42.9 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 28/70 (40%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA V + ++ V + + + +V + +S SP+
Sbjct: 40 SELERATVCPAMELPDQVVSANCRVIYRIDDEPCLRAHMLVHPCDLISPDDEISAGSPLG 99
Query: 128 RALIGKELGD 137
AL+G ++GD
Sbjct: 100 IALLGLKVGD 109
>gi|332535604|ref|ZP_08411372.1| hypothetical protein PH505_db00100 [Pseudoalteromonas haloplanktis
ANT/505]
gi|332034988|gb|EGI71509.1| hypothetical protein PH505_db00100 [Pseudoalteromonas haloplanktis
ANT/505]
Length = 158
Score = 42.5 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 28/151 (18%), Positives = 63/151 (41%), Gaps = 7/151 (4%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
+ ++ L + + A A +++EN E L +G+ + +
Sbjct: 8 EHLRFALEAQLTTAKVAAKTAHDTATHEENIAENKYDTLGLEAAYLAQGQAQRVNDCYKS 67
Query: 73 AEVIDIS--TMSGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSGLVSISSP--- 125
E+ + + D+IA G+ V L N+ K Y G +V+ +++ +P
Sbjct: 68 IELFEPAFNEKPTDKIAIGSLVCLENDNAAQKWFYLGPAAGGLTVNVKEHAIAVVTPGAP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ + L+ K++ D I++ G Y ++++L
Sbjct: 128 MGKQLLNKQIDDEITLTIAGKAHEYVVVEIL 158
>gi|289809959|ref|ZP_06540588.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 96
Score = 42.5 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
RP II +A L E Y LN + RA++ M D +
Sbjct: 3 RPTIIINDLDAERIDRLLEQPAYADLPIADALNA--------ELDRAQMCSPQEMPNDVV 54
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
+ V + G+ + +V S +S+ +P+AR
Sbjct: 55 TMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVAR 96
>gi|56675424|emb|CAA83788.2| transcription elongation factor [Mycoplasma capricolum subsp.
capricolum ATCC 27343]
Length = 44
Score = 42.5 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 20 RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+ + RP++I+ + EAR GDLSENA+Y AA+ Q E
Sbjct: 1 KNLLEVTRPKVIEELVEARNQGDLSENADYDAARNRQAEVEA 42
>gi|229589230|ref|YP_002871349.1| hypothetical protein PFLU1711 [Pseudomonas fluorescens SBW25]
gi|229361096|emb|CAY47959.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
Length = 160
Score = 42.5 bits (99), Expect = 0.020, Method: Composition-based stats.
Identities = 22/139 (15%), Positives = 56/139 (40%), Gaps = 14/139 (10%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEG----RMAELENIITRAEVIDISTMSG 83
R + E + + +Y + R+ E++ +T + + +
Sbjct: 22 QRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQAKRVEEIKQALTLCQAMALRPYDD 81
Query: 84 DR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSPIARALIGKEL 135
R IA GA + L ++N ++ + + A ++ + ++ SP+ ++L+GK
Sbjct: 82 QRGIAVGALLGLEDENG--RQQWLFLAPDAAGLKVDVVGQPVTVITPRSPLGKSLLGKFE 139
Query: 136 GDIISVNAPGGEKTYEILQ 154
GD + + G + + + +
Sbjct: 140 GDEVEILVAGARQHFTVTE 158
>gi|110834982|ref|YP_693841.1| hypothetical protein ABO_2121 [Alcanivorax borkumensis SK2]
gi|110648093|emb|CAL17569.1| hypothetical protein ABO_2121 [Alcanivorax borkumensis SK2]
Length = 144
Score = 42.1 bits (98), Expect = 0.023, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Query: 47 AEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106
Y A L L+ R+ E+ I ++ A G V L ++ ++
Sbjct: 17 KRYLAKTPLFFLSPVRLMEVMEKIEMLRGVES---DLAAAAVGDRVFLFSLEDEEQMSFI 73
Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ + + + +S+ SP+ AL+G G +++V+ G Y +L+V
Sbjct: 74 LAEAGKRPLDNKDLSVLSPLGAALLGSLPGAVVNVDFLGHRHRYLLLKVK 123
>gi|182415649|ref|YP_001820715.1| hypothetical protein Oter_3841 [Opitutus terrae PB90-1]
gi|177842863|gb|ACB77115.1| conserved hypothetical protein [Opitutus terrae PB90-1]
Length = 159
Score = 42.1 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 18/140 (12%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENA------EYQAAKELQNLNEGRMAEL 66
+KI +LR + A EA + EN E E Q +AE
Sbjct: 8 EKILSQLRADLLLQTTAAHTARDEAISEESRPENQYDTHSQEAAYLAEGQARLAAEIAES 67
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL------- 119
+ + + +A GA LV + ++++ +G + ++ +
Sbjct: 68 ITLYESLNL--PDLPAASPVALGA---LVALDDRGRQSWFFIGPRGGGLELQVEGRNVLV 122
Query: 120 VSISSPIARALIGKELGDII 139
++ SP+ R L+GK + D++
Sbjct: 123 LTPQSPLGRELMGKRVDDLV 142
>gi|149191961|ref|ZP_01870191.1| hypothetical protein VSAK1_12150 [Vibrio shilonii AK1]
gi|148834187|gb|EDL51194.1| hypothetical protein VSAK1_12150 [Vibrio shilonii AK1]
Length = 158
Score = 42.1 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 54/144 (37%), Gaps = 7/144 (4%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA--- 73
+L + K + A + E+ A E L G+ LE + +
Sbjct: 12 AQLEQNVVTLTSAMEKTVDAATNEETVPEHKYDTLALEASYLAHGQAVRLEQVKSDIALL 71
Query: 74 -EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQSGLVSISSPIARA 129
+++ S D + V + +++ + + + G + +V+ SP+ RA
Sbjct: 72 RKMVLNPFSSLDNVRLATVVEIEDEDEVVSRFFVLPCAGGLTIEEPTIKVVTPHSPLGRA 131
Query: 130 LIGKELGDIISVNAPGGEKTYEIL 153
LIGK + D + V+ Y I+
Sbjct: 132 LIGKSIDDEVVVSIGEKLTHYAII 155
>gi|152996208|ref|YP_001341043.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1]
gi|150837132|gb|ABR71108.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1]
Length = 163
Score = 42.1 bits (98), Expect = 0.026, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 90 ATVSLVEKNSGDKKNYQI------VGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
T++ +E + G +K + I + + + + LV+ SP+ + L+GK +GD + +
Sbjct: 91 VTLTELESSCGTEKYFFISPCAGGLTIEIIEKKVCLVTPFSPVGKKLLGKVVGDEVELLQ 150
Query: 144 PGGEKTYEILQVL 156
G + YEI +
Sbjct: 151 NGKQMAYEITTIE 163
>gi|114800117|ref|YP_761046.1| regulatory protein [Hyphomonas neptunium ATCC 15444]
gi|114740291|gb|ABI78416.1| regulatory protein [Hyphomonas neptunium ATCC 15444]
Length = 128
Score = 41.7 bits (97), Expect = 0.032, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 11/134 (8%)
Query: 24 QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83
Q RP I +E DL+ + + + E ++RA V + +
Sbjct: 3 QITRPPIYVTDAELERLSDLAHAVQGREPAADMLIEE---------LSRARVTAVEDVPV 53
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
D + V+ V + +++ +V EA++ +SI + + LIG ++GD +
Sbjct: 54 DVVRMHDRVNFV-YDGARYEDFTLVYPYEANIADKRISILTQVGAMLIGLQVGDAMQWAG 112
Query: 144 PGGE-KTYEILQVL 156
G + E+L+V
Sbjct: 113 RDGRGHSMEVLEVS 126
>gi|312959761|ref|ZP_07774277.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
gi|311285927|gb|EFQ64492.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
Length = 160
Score = 41.7 bits (97), Expect = 0.033, Method: Composition-based stats.
Identities = 17/138 (12%), Positives = 52/138 (37%), Gaps = 12/138 (8%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNEG----RMAELENIITRAEVIDISTMSG 83
R + E + + +Y + R+ E++ + + + +
Sbjct: 22 QRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQAKRVEEIKQALALCQNLQLRAYDE 81
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSISSPIARALIGKELG 136
R T+ +E +G ++ + + A ++ + ++ SP+ ++L+GK +
Sbjct: 82 RRGIEIGTLMGLEDENGRQQ-WLFLAPDAAGLKVDVVGQPVTVITPRSPLGKSLLGKCID 140
Query: 137 DIISVNAPGGEKTYEILQ 154
D + + G + + + +
Sbjct: 141 DEVEILVAGARQHFTVTE 158
>gi|262316906|emb|CBA18133.1| putative elongation factor [Paenibacillus phage phiBP]
Length = 72
Score = 41.7 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+T +G KI++EL + + P + + + R +G + + A E ++ +GR+ L
Sbjct: 5 LTVEGVKKIKEELEYVISSKLPEVEQRLELIRKHG-----GDIKDATEERDFYKGRIPYL 59
Query: 67 ENIITRAEVI 76
EN++ A+++
Sbjct: 60 ENMLATAKIV 69
>gi|322417700|ref|YP_004196923.1| GreA/GreB family elongation factor [Geobacter sp. M18]
gi|320124087|gb|ADW11647.1| GreA/GreB family elongation factor [Geobacter sp. M18]
Length = 136
Score = 41.7 bits (97), Expect = 0.035, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 12/102 (11%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
R EL++ + + + + + +E G K + I G QE ++ L
Sbjct: 38 ANRAQELKHALQAYRNLTLQQFNEGSSIRLTALVTLEAEDGAVKTFFI-GPQEGGLKLQL 96
Query: 120 -------VSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
++ SSP+ LIGK LGD +++ G YEI+
Sbjct: 97 GGEEILVITASSPLGSELIGKCLGDEVAL----GNSRYEIVD 134
>gi|90412348|ref|ZP_01220352.1| hypothetical protein P3TCK_11204 [Photobacterium profundum 3TCK]
gi|90326610|gb|EAS43009.1| hypothetical protein P3TCK_11204 [Photobacterium profundum 3TCK]
Length = 166
Score = 41.7 bits (97), Expect = 0.036, Method: Composition-based stats.
Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 13/160 (8%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
+DK + +++ L Q ++A + A +++EN A E L G
Sbjct: 7 MDKTLL----LEQMISALEETHQGAVEAALRAYNTATNDENVAENQYDTLALEASYLAHG 62
Query: 62 ---RMAELE-NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
R+AE E +I+ ++ + G + L++++ +K + V+
Sbjct: 63 QAQRVAECEADILAFKKLNIADDTEKKVVTLGCLIQLIDEDDNNKYVFFAPSAGGLKVRF 122
Query: 118 G-----LVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
+V+ +SP+ ALIG+EL D + V+ YEI
Sbjct: 123 DEKDIIVVTPTSPLGEALIGRELHDDVDVHIGNQIINYEI 162
>gi|260219858|emb|CBA26810.1| hypothetical protein Csp_G38500 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 209
Score = 41.4 bits (96), Expect = 0.040, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
S SPIAR L+ GD + + P E+L+V +
Sbjct: 167 SWISPIARTLLKAREGDELKLVMPDRVCDIEVLRVQY 203
Score = 36.3 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERPRIIKAIS 35
K +T +GF ++ EL ERP+I+ +
Sbjct: 31 KNYITPQGFATLRDELLDLIDNERPKIVDIVH 62
>gi|39995281|ref|NP_951232.1| hypothetical protein GSU0170 [Geobacter sulfurreducens PCA]
gi|39982043|gb|AAR33505.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
gi|298504284|gb|ADI83007.1| conserved hypothetical protein [Geobacter sulfurreducens KN400]
Length = 160
Score = 41.4 bits (96), Expect = 0.041, Method: Composition-based stats.
Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 8/104 (7%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV----GDQEADV 115
R E+ + +++ + + +E +G + I G + AD
Sbjct: 58 ANRAQEIRQSLEAYRSLELQEFDAGAPVRLSALVTLEDEAGRTRRLFIGPQAGGMKLADP 117
Query: 116 QSGLVSIS--SPIARALIGKELGDIIS-VNAPGGEKTYEILQVL 156
+V I+ SP+ L+G GD + V+A G+ Y I+ V
Sbjct: 118 AGEIVVITPASPLGNRLLGLAAGDEVQGVDAGKGKF-YTIVAVT 160
>gi|294140717|ref|YP_003556695.1| hypothetical protein SVI_1946 [Shewanella violacea DSS12]
gi|293327186|dbj|BAJ01917.1| conserved hypothetical protein [Shewanella violacea DSS12]
Length = 182
Score = 41.4 bits (96), Expect = 0.042, Method: Composition-based stats.
Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 26/152 (17%)
Query: 31 IKAISEARAYGDLSENAEYQA----AKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
K E + + ++Y+ A L + R+AE + + ++++ S D I
Sbjct: 31 AKQAHETATHSETVAKSKYETFGLEASYLAHGQAQRVAECNIELLAYKSLNLACFSDDII 90
Query: 87 AFGATVSLVEKNSGDKKNYQI---VGDQEADVQSG-------------------LVSISS 124
+ + +E G K I G + D++ +++ SS
Sbjct: 91 IDLSALVTIEDEQGAVKTCFIGPGAGGMKIDIKLDTDIDTGAIKHGDPKLGHIIVITPSS 150
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
P+ + L+GK + D + + G K YEI+ V
Sbjct: 151 PLGQILMGKLVYDSVQLTIGGALKHYEIISVS 182
>gi|124516047|gb|EAY57556.1| probable helicase [Leptospirillum rubarum]
Length = 448
Score = 41.4 bits (96), Expect = 0.042, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 10/148 (6%)
Query: 13 DKIQQELRWRQQEERPRII---KAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
+K+ L ++ +P I E ++ G N + + + AE+E
Sbjct: 303 EKLISFLEDLRESWKPEHSSGEAWIEEGQSVGQPPMNPDQSIKQVETMV----QAEMERE 358
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ +ID I G V ++ + + D +G+V+ S P+A+A
Sbjct: 359 AVSSVLIDTD--DDLEIEVGDVVRYMDLAHPNDMLTVQITSGRDDFPNGIVNESRPLAQA 416
Query: 130 LIGKELGDIISVNAPGGE-KTYEILQVL 156
L+G +GD + ++ G +T++++++
Sbjct: 417 LLGAVVGDEVVLHLVGRPSRTFKVIEIQ 444
>gi|225569330|ref|ZP_03778355.1| hypothetical protein CLOHYLEM_05412 [Clostridium hylemonae DSM
15053]
gi|225162129|gb|EEG74748.1| hypothetical protein CLOHYLEM_05412 [Clostridium hylemonae DSM
15053]
Length = 370
Score = 41.4 bits (96), Expect = 0.044, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 50/118 (42%), Gaps = 20/118 (16%)
Query: 54 ELQNLNEGRMAELENIITRA----EVIDISTMSG--------DRIAFGATVSL------V 95
E Q L + + ++ + +V+++ + D ++ G T L
Sbjct: 9 EEQELMDRSVRFTKDKLLSYDTWKKVMELPGVDCPNHISGYIDDVSMGDTKDLRLSGEPE 68
Query: 96 EKNSGDKKNYQIV-GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
+G Y++ G AD +G I +A++ +GK++GD ++V+ G YEI
Sbjct: 69 LDENGLFVTYELTEGKVPADGSAGGCVIPEALAKS-MGKKVGDKVTVDTALGRAEYEI 125
>gi|307200398|gb|EFN80630.1| hypothetical protein EAI_05549 [Harpegnathos saltator]
Length = 1203
Score = 41.4 bits (96), Expect = 0.046, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSE-----NAEYQAAKELQNLNEGRMAELE 67
+K ++EL ++ R R ++ I EAR E AE + +E + +E R E
Sbjct: 306 EKKRKELERLEEMARQRELERIREAREKQRQEELERRRLAELRTKEEKRREDEARQREER 365
Query: 68 NIITRAE 74
+ +
Sbjct: 366 QKLNLEQ 372
>gi|50085871|ref|YP_047381.1| hypothetical protein ACIAD2826 [Acinetobacter sp. ADP1]
Length = 66
Score = 41.4 bits (96), Expect = 0.048, Method: Composition-based stats.
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
P + L K + D + V P G K + I + +I
Sbjct: 3 PYGKNLFSKSVNDEVHVQTPTGRKIWYINSMEYI 36
>gi|182678940|ref|YP_001833086.1| DNA helicase, putative [Beijerinckia indica subsp. indica ATCC 9039]
gi|182634823|gb|ACB95597.1| DNA helicase, putative [Beijerinckia indica subsp. indica ATCC 9039]
Length = 1649
Score = 41.0 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 1/78 (1%)
Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELG 136
+ S + I G V + + ++ I + D +G +S+ SP+ L+G
Sbjct: 1568 EGKPPSPEGIRIGDRVIIQYLDDHKTMSFTIT-KDKEDYANGFLSVGSPLGSQLLGAVED 1626
Query: 137 DIISVNAPGGEKTYEILQ 154
+ I+ G + I+Q
Sbjct: 1627 EEIAFEESGRARPVLIVQ 1644
>gi|301166284|emb|CBW25859.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
Length = 159
Score = 40.6 bits (94), Expect = 0.071, Method: Composition-based stats.
Identities = 33/164 (20%), Positives = 58/164 (35%), Gaps = 18/164 (10%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
++K + + D+I+ EL + A D +++ G
Sbjct: 1 MNKKKLLANLIDQIKVELE-----KAKAAYDTSKSATRDPDFKSESKWDTRSIEAGYLAG 55
Query: 62 ----RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEA--- 113
R+ ELE + E + ++S + G+ V + N K Y I
Sbjct: 56 AQKVRVDELEMDLNVIEELAADSLSKKPTVTIGSLVEIKFNNL--VKKYFITPAAGGYIV 113
Query: 114 ---DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
D + +S+ SPI ++ E GD V G + YEI+
Sbjct: 114 NVDDEVALTISVFSPIGNEVLDLEEGDSFEVEMNGESREYEIIS 157
>gi|37595580|gb|AAQ94634.1| RepB [Comamonas testosteroni]
Length = 78
Score = 40.6 bits (94), Expect = 0.072, Method: Composition-based stats.
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 99 SGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+V ++AD +G S+ S + A++G GD I + I ++L+
Sbjct: 10 DEVAVEVALVYPEDADDSAGRFSVFSGVGTAILGCREGDRIDWRILDRTRHIRIEKLLY 68
>gi|325955378|ref|YP_004239038.1| hypothetical protein Weevi_1769 [Weeksella virosa DSM 16922]
gi|323437996|gb|ADX68460.1| hypothetical protein Weevi_1769 [Weeksella virosa DSM 16922]
Length = 148
Score = 40.6 bits (94), Expect = 0.072, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 62/144 (43%), Gaps = 11/144 (7%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENA---EYQAAKELQNL-NEGRMAELENIITR 72
+EL+ + K I++ RA ++++ +Y+ +E+ N + + + I+ +
Sbjct: 10 EELQNILLNKLNHYDKLIADLRASNTDTKSSMGDKYETFREMLNQEINHLLHQKKMILAQ 69
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-VSISSPIARALI 131
+V++ T I + + + G+ +G+ + + +S +P+A ALI
Sbjct: 70 QQVVENLTNDPHSIVDFGSFVVTD--FGNFYISTSLGEVNFNGIKFITISQQTPLANALI 127
Query: 132 GKELGDIISVNAPGGEKTYEILQV 155
G + VN +K Y I +
Sbjct: 128 GLKENQTFEVN----QKKYTIQAI 147
>gi|289677182|ref|ZP_06498072.1| hypothetical protein PsyrpsF_28108 [Pseudomonas syringae pv.
syringae FF5]
Length = 160
Score = 40.6 bits (94), Expect = 0.076, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 12/137 (8%)
Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGD 84
R + E + + +Y + R+ E+ +T +
Sbjct: 23 RAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQSLTLYRKWSLKPFDES 82
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIARALIGKELGD 137
R + +VE G Y +G A D +++ +P+ ++L+GK D
Sbjct: 83 RGIQTGDLVVVEDADGQTH-YLFLGPDAAGLKVSAGDQLVTVITARAPLGQSLLGKFEDD 141
Query: 138 IISVNAPGGEKTYEILQ 154
+ + G ++YEI Q
Sbjct: 142 AVQIVINGSRQSYEITQ 158
>gi|188585430|ref|YP_001916975.1| hypothetical protein Nther_0801 [Natranaerobius thermophilus
JW/NM-WN-LF]
gi|179350117|gb|ACB84387.1| hypothetical protein Nther_0801 [Natranaerobius thermophilus
JW/NM-WN-LF]
Length = 303
Score = 40.6 bits (94), Expect = 0.076, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 79 STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
T S I V++ + + +++ + D + +S SP+ + LIGK G+I
Sbjct: 88 KTYSNQFITIEDQVTIKDLLDDNIFQFKLT-ENNKDTEIKTISPKSPVGQKLIGKTYGEI 146
Query: 139 ISVNAPG-GEKT---YEILQ 154
I V G+K Y++L
Sbjct: 147 IEVEVSTIGKKELNKYKVLD 166
>gi|330897221|gb|EGH28640.1| hypothetical protein PSYJA_06464 [Pseudomonas syringae pv. japonica
str. M301072PT]
Length = 160
Score = 40.6 bits (94), Expect = 0.077, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 12/137 (8%)
Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGD 84
R + E + + +Y + R+ E+ +T +
Sbjct: 23 RAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQSLTLYRKWSLKPFDES 82
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIARALIGKELGD 137
R + +VE G Y +G A D +++ +P+ ++L+GK D
Sbjct: 83 RGIQTGDLVVVEDADGQTH-YLFLGPDAAGLKVSAGDQLVTVITARAPLGQSLLGKFEDD 141
Query: 138 IISVNAPGGEKTYEILQ 154
+ + G ++YEI Q
Sbjct: 142 AVQIVINGSRQSYEITQ 158
>gi|196232795|ref|ZP_03131646.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
gi|196223255|gb|EDY17774.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
Length = 159
Score = 40.6 bits (94), Expect = 0.082, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 35 SEARAYGDLSENAEYQAAKE---LQNLNEGRMAELENIITRAEVIDIST-MSGDRIAFGA 90
EA + EN A E L ++ ELE E +D + + GA
Sbjct: 30 EEATHEQNKPENKYDTRALEASYLARGQSRQLIELEKAKQEFESLDSADWPPKTPVEIGA 89
Query: 91 TVSLVEKNSGDKKNYQIVGDQEADVQS-------GLVSISSPIARALIGKELGDIISVNA 143
++L + D ++G + ++ +++ SPI + LIGK GD I++
Sbjct: 90 LLTLKNGPAED---VYLLGPRAGGIEVVCEGTPVTVITPQSPIGQLLIGKVAGDSIALPQ 146
Query: 144 PGGEKTYEILQVL 156
++ ++IL+V
Sbjct: 147 GREQRRFKILRVQ 159
>gi|91975332|ref|YP_567991.1| hypothetical protein RPD_0852 [Rhodopseudomonas palustris BisB5]
gi|91681788|gb|ABE38090.1| hypothetical protein RPD_0852 [Rhodopseudomonas palustris BisB5]
Length = 156
Score = 40.2 bits (93), Expect = 0.086, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA VID S + V+ + ++ +V + +S+ SP+
Sbjct: 35 SELERAVVID-SPAPPLTVRLDDWVTFRADDDQPLESRILVLPGHYRRNALHLSVLSPVG 93
Query: 128 RALIGKELGDIISVNAPGGEKTY 150
AL+G G + G +
Sbjct: 94 AALVGLRPGARMHYQGVDGVQHV 116
>gi|254562832|ref|YP_003069927.1| regulator [Methylobacterium extorquens DM4]
gi|254270110|emb|CAX26100.1| putative regulator [Methylobacterium extorquens DM4]
Length = 149
Score = 40.2 bits (93), Expect = 0.086, Method: Composition-based stats.
Identities = 11/68 (16%), Positives = 29/68 (42%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ RA + + + ++ V + + + + + + +S++SP+ A
Sbjct: 42 LKRATLCPPCALPSEVVSVNCRVLYRLDDEPGVRVHLLAHPDDLINLADGLSVASPLGTA 101
Query: 130 LIGKELGD 137
L+G +GD
Sbjct: 102 LLGLRVGD 109
>gi|237799036|ref|ZP_04587497.1| hypothetical protein POR16_09402 [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331021890|gb|EGI01947.1| hypothetical protein POR16_09402 [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 160
Score = 40.2 bits (93), Expect = 0.086, Method: Composition-based stats.
Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 17/153 (11%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELEN 68
DK++ +L R + E + + +Y + R+ E+
Sbjct: 12 DKLEIDLD-----VAQRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQ 66
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVS 121
+T + + R + +VE G Y +G A D +++
Sbjct: 67 SLTLYQKWSLKPFDESRGIQTGDLIIVEAQDGQTH-YLFLGPDAAGLKVSAGDQLIMVIT 125
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+P+ ++L+GK D + + G ++YEI Q
Sbjct: 126 ARAPLGQSLLGKFEDDAVQIVINGTGQSYEITQ 158
>gi|154253499|ref|YP_001414323.1| GreA/GreB family elongation factor [Parvibaculum lavamentivorans
DS-1]
gi|154157449|gb|ABS64666.1| GreA/GreB family elongation factor [Parvibaculum lavamentivorans
DS-1]
Length = 171
Score = 39.8 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 1/95 (1%)
Query: 54 ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
E +L + + A ++ + ++ G+ V ++ ++ + ++ A
Sbjct: 41 EQLDLLNPMQPFVRAKLEEARIVSGNEIAETVATLGSIVRYRIEDRMLERRLLQLDNRHA 100
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148
+S+ +PI AL+G+ GD+ G K
Sbjct: 101 -PNGQYLSVLTPIGLALLGRSTGDLCEAELFNGAK 134
>gi|281424495|ref|ZP_06255408.1| conserved hypothetical protein [Prevotella oris F0302]
gi|281401332|gb|EFB32163.1| conserved hypothetical protein [Prevotella oris F0302]
Length = 1194
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 87 AFGATVSLVEKNSGDKK--NYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
G +V K + Y ++ D + ++ SP+ A+IGK+ DI+ VN
Sbjct: 728 TMGPIHDIVNKQYEKAEIGQYVLIEYANGDRKVYRITSDSPLGIAVIGKKANDIVEVNLD 787
Query: 145 --GGEKTYEILQV 155
++ +++ +
Sbjct: 788 YSRRKRKVKVIGI 800
>gi|269965274|ref|ZP_06179395.1| hypothetical protein VMC_08250 [Vibrio alginolyticus 40B]
gi|269830075|gb|EEZ84303.1| hypothetical protein VMC_08250 [Vibrio alginolyticus 40B]
Length = 138
Score = 39.8 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 17/92 (18%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 68 NIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+++ E+ + +R IA G TV LV+ + +V ++ +G++++ S
Sbjct: 30 RLLSLFEICEQQAHCRNRARIAVGDTVRLVDVERAYQYRMTLVSSRKGQPMTGMLAVDSY 89
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ L+G+ D + V + + I +++
Sbjct: 90 LGARLLGRAKNDALEVEIFNQRRCFVITEIVH 121
>gi|330960528|gb|EGH60788.1| hypothetical protein PMA4326_18463 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 160
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 12/138 (8%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSG 83
R + E + + +Y + R+ E+ + R + +
Sbjct: 22 QRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQSLARYQSWSLKPFDE 81
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIARALIGKELG 136
R + +VE +G ++ + G A D +++ +P+ ++L+GK
Sbjct: 82 SRGIQTGDLVVVEAENGQTQHLFL-GPDAAGLKVFANDRLITVITARAPLGQSLLGKLEN 140
Query: 137 DIISVNAPGGEKTYEILQ 154
D + + G ++Y I Q
Sbjct: 141 DEVQIVINGSGQSYVITQ 158
>gi|289672826|ref|ZP_06493716.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
syringae FF5]
Length = 49
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
VS+ +P+ AL+G ++G I APGG+ +L V +
Sbjct: 2 VSVLAPMGSALLGLQIGQHIDWPAPGGKTLKLTLLAVEY 40
>gi|300772995|ref|ZP_07082864.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
gi|300759166|gb|EFK55993.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33861]
Length = 152
Score = 39.8 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 58/147 (39%), Gaps = 10/147 (6%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D + + + I++ R E +++A A S +Y+ ++E+ +
Sbjct: 1 MKDPLQLKERLVKHIKETTDRRLLEIDTALVQAQESANDDTKSSAGDKYETSREMIQQDI 60
Query: 61 GRMAELE-NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQ 116
R+ + +I ++I+ G + + + + + Y + +G D
Sbjct: 61 NRLQQQRAEVIRELDIINKIEQEGTEVGKLGALVVTD-----RFTYFVATSLGQLVIDGN 115
Query: 117 S-GLVSISSPIARALIGKELGDIISVN 142
+VS SPI + LIGKE G N
Sbjct: 116 KYAVVSAQSPIGKQLIGKEKGQDFEFN 142
>gi|91787829|ref|YP_548781.1| superfamily I DNA/RNA helicase [Polaromonas sp. JS666]
gi|91697054|gb|ABE43883.1| Superfamily I DNA and RNA helicases and helicase subunits-like
protein [Polaromonas sp. JS666]
Length = 2096
Score = 39.4 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
+ G V+ N + ++ ++ D ++ + G+V+ +P+A+AL+G GD+ +
Sbjct: 2017 FVEVGDRVTYCLVNEPNDRHCVLIVDSPSNAKMGIVNEETPLAQALLGLSPGDVGELEV- 2075
Query: 145 GGEK--TYEILQVL 156
G+K +L+V
Sbjct: 2076 AGQKNRQLRVLKVQ 2089
>gi|326801882|ref|YP_004319701.1| hypothetical protein Sph21_4514 [Sphingobacterium sp. 21]
gi|326552646|gb|ADZ81031.1| hypothetical protein Sph21_4514 [Sphingobacterium sp. 21]
Length = 154
Score = 39.4 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 33/163 (20%), Positives = 71/163 (43%), Gaps = 30/163 (18%)
Query: 15 IQQELRWRQQEERPRIIKAISEARAY--------------------GDLSENAEYQAAKE 54
+ +EL + + R + ++E + GD E +E
Sbjct: 1 MNKELNELKTKLYKRCHEIVNERIDHAEQGICYAKDAATDDTKSSAGDKYETTREMMQQE 60
Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
+ N NE ++AE + + + + ++ +S D + G+ LV+ N G +G E
Sbjct: 61 I-NRNERQLAEANRLKYQLDGVSVALVS-DIVQLGS---LVQTNDGLFFLAIALGTVELS 115
Query: 115 VQSG-LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S ++S SP + ++GK +G+ ++ N +++Y+IL ++
Sbjct: 116 PYSFFVISPVSPFGQTMLGKRVGECLTFN----KRSYQILAIV 154
>gi|330953548|gb|EGH53808.1| hypothetical protein PSYCIT7_19666 [Pseudomonas syringae Cit 7]
Length = 160
Score = 39.4 bits (91), Expect = 0.18, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 14/130 (10%)
Query: 32 KAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGAT 91
+ I+E + Y L A Y AA + + + E R + + D S I G
Sbjct: 36 ENIAENK-YDTLGLEASYLAAGQARRVEEIRQSLALYRKWSLKPFDES----RGIQTGDL 90
Query: 92 VSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIARALIGKELGDIISVNAP 144
+ + +++G + +Y +G A D +++ +P+ + L+GK D + +
Sbjct: 91 IVV--EDAGGQTHYLFLGPDAAGLKVSAGDQLVTVITARAPLGQNLLGKFEDDAVQIVIN 148
Query: 145 GGEKTYEILQ 154
G ++YEI Q
Sbjct: 149 GSRQSYEITQ 158
>gi|213968704|ref|ZP_03396846.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
gi|301381320|ref|ZP_07229738.1| hypothetical protein PsyrptM_01738 [Pseudomonas syringae pv. tomato
Max13]
gi|302061489|ref|ZP_07253030.1| hypothetical protein PsyrptK_16000 [Pseudomonas syringae pv. tomato
K40]
gi|302130044|ref|ZP_07256034.1| hypothetical protein PsyrptN_01550 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213926637|gb|EEB60190.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
Length = 160
Score = 39.0 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 17/153 (11%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELEN 68
DK++ +L R + E + + +Y + R+ E+
Sbjct: 12 DKLEIDLD-----IAQRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQ 66
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVS 121
+T + + + +V+ G + Y +G A ++ +++
Sbjct: 67 SLTLYQNWSLKPFDESCGIQTGDLVVVQAQDGQTR-YLFLGPDAAGLKVNAGDRLITVIT 125
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+P+ ++L+G+ D + + G ++YEI Q
Sbjct: 126 ARAPLGQSLLGRFEDDAVQIVINGSGQSYEITQ 158
>gi|218533325|ref|YP_002424140.1| GreA/GreB family elongation factor [Methylobacterium
chloromethanicum CM4]
gi|218525628|gb|ACK86212.1| GreA/GreB family elongation factor [Methylobacterium
chloromethanicum CM4]
Length = 149
Score = 39.0 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA + GD I VS + + ++V VS +SP+
Sbjct: 40 SKLERAVSFNAYPPHGDVITVTCRVSYRLDDEPTVRARRLVYPSSVIASEDEVSATSPLG 99
Query: 128 RALIGKELGDIISV--NAPGGEKTYEILQV 155
A++G GD + N G E EI V
Sbjct: 100 VAMLGLRRGDRMPFRDNTTGREHIVEIADV 129
>gi|77360319|ref|YP_339894.1| hypothetical protein PSHAa1376 [Pseudoalteromonas haloplanktis
TAC125]
gi|76875230|emb|CAI86451.1| conserved protein of unknown function [Pseudoalteromonas
haloplanktis TAC125]
Length = 180
Score = 39.0 bits (90), Expect = 0.20, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 65/153 (42%), Gaps = 11/153 (7%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
+ ++ L + + A A +++EN E L +G+ + +
Sbjct: 30 EHLKFALEAQLTTAKVAAKTAHDTATHEENIAENKYDTLGLEAAYLAQGQAQRVNDCYKS 89
Query: 73 AEVIDI--STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-------VSIS 123
E+ + + +IA G+ V L +++ +++ + +G + + V+
Sbjct: 90 MELFKPIFNQPASSKIAIGSLVCL--EDTNEQQKWFYLGPSAGGLTVEVKGLTIAVVTPG 147
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+P+ + L+ K++ D IS+ + Y+I+++L
Sbjct: 148 APLGKLLLNKQIDDGISLTIADVKHDYDIVEIL 180
>gi|225010462|ref|ZP_03700933.1| GreA/GreB family elongation factor [Flavobacteria bacterium
MS024-3C]
gi|225005291|gb|EEG43242.1| GreA/GreB family elongation factor [Flavobacteria bacterium
MS024-3C]
Length = 159
Score = 39.0 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 45/120 (37%), Gaps = 16/120 (13%)
Query: 41 GDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
GD E E + L + R ++I + +D + + +
Sbjct: 52 GDKHETGRAMIQLEREKLAQQRERNDQDI----KTLDALKNKTTTVHIAPGALV----NT 103
Query: 101 DKKNYQIVGDQEADVQSGL----VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
+Y + +A + +S SPI + L+GK+ G+ +S + ++L+VL
Sbjct: 104 SLASYFLAVPADAFSHNDKKIYCISPQSPIGQLLLGKKAGESLSFRG----NSIKVLEVL 159
>gi|330877024|gb|EGH11173.1| hypothetical protein PSYMP_16256 [Pseudomonas syringae pv.
morsprunorum str. M302280PT]
gi|330968157|gb|EGH68417.1| hypothetical protein PSYAC_26671 [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 160
Score = 39.0 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 17/153 (11%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELEN 68
DK++ +L R + E + + +Y + R+ E+
Sbjct: 12 DKLEIDLD-----IAQRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQ 66
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVS 121
+T + + R + +VE G + Y +G A D +++
Sbjct: 67 SLTLYQNWSLKPFDESRGIQTGDLVVVEAQDGQTR-YLFLGPDAAGLKVSAGDRLITVIT 125
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+P+ ++L+G+ D + + G ++YEI Q
Sbjct: 126 ARAPLGQSLLGRFEDDAVQIVINGSGQSYEITQ 158
>gi|51892882|ref|YP_075573.1| putative transcription elongation factor [Symbiobacterium
thermophilum IAM 14863]
gi|51856571|dbj|BAD40729.1| putative transcription elongation factor [Symbiobacterium
thermophilum IAM 14863]
Length = 154
Score = 39.0 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 83 GDRIAFGATVSLVEKNSGDKKN-YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
D + V+LV++ G + Y +V +E D G +S SP+ AL+ K + D + +
Sbjct: 75 DDVVFMDVPVTLVDETDG-TEEVYTVVLPEEGDPAKGHISCLSPLGLALLLKRVNDRVVI 133
Query: 142 NAPGGEKTYEILQV 155
+APGG TY I V
Sbjct: 134 DAPGGRFTYRIAAV 147
>gi|330980302|gb|EGH78435.1| hypothetical protein PSYAP_17438 [Pseudomonas syringae pv. aptata
str. DSM 50252]
Length = 160
Score = 39.0 bits (90), Expect = 0.24, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 49/137 (35%), Gaps = 12/137 (8%)
Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGD 84
R + E + + +Y + R+ E+ +T +
Sbjct: 23 RAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQSLTLYRKWSLKPFDES 82
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVSISSPIARALIGKELGD 137
R + +VE SG Y +G A D +++ +P+ ++L+GK D
Sbjct: 83 RGIQTGDLVVVEDVSGQTH-YLFLGPDAAGLKVSAGDQLVTVITARAPLGQSLLGKFEDD 141
Query: 138 IISVNAPGGEKTYEILQ 154
+ + G ++YEI Q
Sbjct: 142 AVQIVINGSRQSYEITQ 158
>gi|222085969|ref|YP_002544501.1| Chromosome segregation ATPase [Agrobacterium radiobacter K84]
gi|221723417|gb|ACM26573.1| Chromosome segregation ATPase [Agrobacterium radiobacter K84]
Length = 312
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 12 FDKIQQELRWRQQEERPRIIK-----------AISEARAYGDLSENAEYQAAKELQNLNE 60
++Q+EL R+Q E +I + A+S+AR DL ++E LQ+ +
Sbjct: 176 HQQLQKELDRREQAELAKIKERGDMPVYQTRLALSQARQLVDLLNSSEEPGKPALQSQID 235
Query: 61 GRMAELENIITRAE 74
++ +LE +
Sbjct: 236 AKITDLEKTLEDQR 249
>gi|225155838|ref|ZP_03724324.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
gi|224803388|gb|EEG21625.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
Length = 193
Score = 38.7 bits (89), Expect = 0.26, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 21/148 (14%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSEN------AEYQAAKELQNLNEGRMAELENII 70
EL + + A EA + EN E E Q G +A I
Sbjct: 40 AELEAELATQTRAALDAHDEATSEESKPENKYDMHSQEAAYLAEGQARLAGEIARA---I 96
Query: 71 TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI-----------VGDQEADVQSGL 119
+ ++T S + G+ V L + + +Y I V+ +
Sbjct: 97 ESYRALSLAT-SATHVETGSLVRLEDTATRRPIHYFIGPQRGGLTLTVAARDGRSVEITV 155
Query: 120 VSISSPIARALIGKELGDIISVNAPGGE 147
++ ++P+ R L+G LGD IS+ G+
Sbjct: 156 LTPAAPLGRQLLGHTLGDEISLPGRRGK 183
>gi|66046860|ref|YP_236701.1| hypothetical protein Psyr_3631 [Pseudomonas syringae pv. syringae
B728a]
gi|63257567|gb|AAY38663.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
B728a]
gi|330972328|gb|EGH72394.1| hypothetical protein PSYAR_17715 [Pseudomonas syringae pv. aceris
str. M302273PT]
Length = 160
Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 13/154 (8%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELE 67
+I +L A A +++EN Y + R+ E+
Sbjct: 7 LQRIIDKLNIDLDIAERAAQTAYETATHEENIAENK-YDTLGLEASYLAAGQARRVEEIR 65
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLV 120
+T + R + +VE SG Y +G A D ++
Sbjct: 66 QSLTLYRKWSLKPFDESRGIQTGDLVVVEDASGQTH-YLFLGPDAAGLKVSAGDHLVTVI 124
Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+ +P+ + L+GK D + + G ++YEI Q
Sbjct: 125 TARAPLGQNLLGKFEDDAVQIVINGSGQSYEITQ 158
>gi|28868968|ref|NP_791587.1| hypothetical protein PSPTO_1762 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28852208|gb|AAO55282.1| conserved protein of unknown function [Pseudomonas syringae pv.
tomato str. DC3000]
gi|331016859|gb|EGH96915.1| hypothetical protein PLA106_12490 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 160
Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 24/153 (15%), Positives = 55/153 (35%), Gaps = 17/153 (11%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELEN 68
DK++ +L R + E + + +Y + R+ E+
Sbjct: 12 DKLEIDLD-----IAQRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQ 66
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-------DVQSGLVS 121
+T + + + +V+ G + Y +G A D +++
Sbjct: 67 SLTLYQNWSLKPFDESCGIQTGDLVVVQAQDGQTR-YLFLGPDAAGLKVSAGDRLITVIT 125
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+P+ ++L+G+ D + + G ++YEI Q
Sbjct: 126 ARAPLGQSLLGRFEDDAVQIVINGSGQSYEITQ 158
>gi|94501322|ref|ZP_01307843.1| hypothetical protein RED65_02879 [Oceanobacter sp. RED65]
gi|94426593|gb|EAT11580.1| hypothetical protein RED65_02879 [Oceanobacter sp. RED65]
Length = 155
Score = 38.3 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 27/139 (19%), Positives = 48/139 (34%), Gaps = 11/139 (7%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTM 81
E + + A + +Y Q R+ L+ I R D+ T
Sbjct: 20 EHIKAAEQAHNAATHEQSKAETQYDTLGLEQAYLAHGQSERIDNLQQQIARLNHFDLRTF 79
Query: 82 S-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV---SISSPIARALIGKELGD 137
D I GA V L+ + + I+ + + +PIA+A++G + D
Sbjct: 80 DEDDEIHLGAFVQLINSQTNKNLDVFILPCAGGYTLEKSIHTLTPDTPIAKAIMGLGIDD 139
Query: 138 IISVNAPGGEKTYEILQVL 156
G++ Y I +V
Sbjct: 140 --EFKLGNGQR-YRITKVS 155
>gi|91228344|ref|ZP_01262272.1| hypothetical protein V12G01_10091 [Vibrio alginolyticus 12G01]
gi|91188104|gb|EAS74408.1| hypothetical protein V12G01_10091 [Vibrio alginolyticus 12G01]
Length = 138
Score = 38.3 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 68 NIITRAEVIDISTMSGDR--IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
+++ E+ + +R IA G V LV+ + +V ++ +G++++ S
Sbjct: 30 RLLSLFEICEQQAHCRNRARIAVGDMVRLVDVERAYQYRMTLVSSRKGQPMTGMLAVDSY 89
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
+ L+G+ D + V + + I +++
Sbjct: 90 LGSRLLGRAKNDALEVEIFNQRRCFVITEIVH 121
>gi|320323336|gb|EFW79424.1| hypothetical protein PsgB076_18316 [Pseudomonas syringae pv.
glycinea str. B076]
Length = 160
Score = 38.3 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 21/166 (12%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN----AEYQAAKELQN 57
++K V DK++ +L Q+ + A E + + A Y AA + +
Sbjct: 1 MNKQDVLQSIIDKLEIDLDIAQRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARR 60
Query: 58 LNEGRMAELENIITRAEVIDIST--MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
+ E R + + D S +GD +A A G + Y +G A +
Sbjct: 61 VEEIRQSLAAYRKWSLKPFDESRGIQTGDLVAVEAL--------GGQTQYLFLGPDAAGL 112
Query: 116 QSG-------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+ +++ +P+ ++L+GK D + + G ++YEI Q
Sbjct: 113 KVNAGEQLVTVITAKAPLGQSLLGKFEDDAVQIVINGSGQSYEITQ 158
>gi|254562535|ref|YP_003069630.1| hypothetical protein METDI4156 [Methylobacterium extorquens DM4]
gi|254269813|emb|CAX25788.1| conserved hypothetical protein, putative regulator
[Methylobacterium extorquens DM4]
Length = 161
Score = 38.3 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 2/91 (2%)
Query: 68 NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
+ + RA + S G +A VS + ++ A +S +SP+
Sbjct: 40 SELDRAVTVAASPPLGGVVAVTCRVSYRLDDEPTVHARRLAHPSSAVGSEEEISAASPLG 99
Query: 128 RALIGKELGDIISV--NAPGGEKTYEILQVL 156
A++G GD + NA G E EI V
Sbjct: 100 VAMLGLRRGDRMPFRDNATGREHVVEIADVE 130
>gi|119472680|ref|ZP_01614650.1| hypothetical protein ATW7_07324 [Alteromonadales bacterium TW-7]
gi|119444805|gb|EAW26107.1| hypothetical protein ATW7_07324 [Alteromonadales bacterium TW-7]
Length = 158
Score = 38.3 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 27/150 (18%), Positives = 61/150 (40%), Gaps = 11/150 (7%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
++ +L +Q + A E + +AA Q E ++I
Sbjct: 13 ALEAQLNSAKQAAKAAHDAATHEESVAETQYDTLGLEAAYLAQGQAERVNDCYKSIKQFE 72
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-------SGLVSISSPI 126
+ T +++ + V L ++N+ K Y +G + +V+ +P+
Sbjct: 73 TIFKEPT--HNKVIISSLVCLEDENALQKWFY--LGPAAGGLTVEVKGQTIQVVTPEAPL 128
Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
+ L+GK+L D +S++ G Y+++++L
Sbjct: 129 GKQLLGKQLDDEVSLSIAGKNHEYDVVEIL 158
>gi|221134409|ref|ZP_03560714.1| hypothetical protein GHTCC_05724 [Glaciecola sp. HTCC2999]
Length = 84
Score = 38.3 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 82 SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-------SGLVSISSPIARALIGKE 134
D I GA V ++++N + + + ++ ++S SP+ + L+GKE
Sbjct: 5 DIDIITIGALVEIIDQN--ETSLWVFLAPVSGGIKFEFKQRKIMVISTHSPLGKQLLGKE 62
Query: 135 LGDIISVNAPGGEKTYEILQ 154
GD +S+ Y I
Sbjct: 63 TGDELSIGLGARSTQYRITD 82
>gi|91975071|ref|YP_567730.1| DNA helicase, putative [Rhodopseudomonas palustris BisB5]
gi|91681527|gb|ABE37829.1| DNA helicase, putative [Rhodopseudomonas palustris BisB5]
Length = 1629
Score = 38.3 bits (88), Expect = 0.39, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 55 LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
Q + + R E+ EV S I G ++ + + ++ + D
Sbjct: 1525 EQRVADAR---NESKAKSDEVGVAGVRSESGIKIGDSIVVRYLDDNKTSSFVL-SRDRHD 1580
Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
+GL+ + + ++G D I V G + I+
Sbjct: 1581 PVNGLIGADTAFGKQILGFSEEDEIEVEDAGRSRRLLIV 1619
>gi|330884767|gb|EGH18916.1| transcription elongation factor GreB [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 31
Score = 37.9 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVLW 157
AL+ KE GD + VN P GEK + + +++
Sbjct: 1 ALLKKEEGDEVLVNTPEGEKLWFVNSIVY 29
>gi|189426066|ref|YP_001953243.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ]
gi|189422325|gb|ACD96723.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ]
Length = 160
Score = 37.9 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 60 EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI------VGDQEA 113
R E+ + + + + D + +E G+++ + + A
Sbjct: 58 ANRAQEIRVALEGYRNLVLQDFNDDSPIRLTALVTLEDEEGNQRRLFLGPYGGGMKIPVA 117
Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
D + +++ SP+ R+L+GK++GD + + ++QV+
Sbjct: 118 DGEIVVITPGSPLGRSLLGKQVGDELQAEEHALTAAFTVVQVV 160
>gi|260430961|ref|ZP_05784932.1| lipoprotein releasing system transmembrane protein LolE
[Silicibacter lacuscaerulensis ITI-1157]
gi|260414789|gb|EEX08048.1| lipoprotein releasing system transmembrane protein LolE
[Silicibacter lacuscaerulensis ITI-1157]
Length = 428
Score = 37.9 bits (87), Expect = 0.48, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 15/111 (13%)
Query: 53 KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN-------Y 105
+ Q + +A + + R + + + ++ +++SG +
Sbjct: 80 IDAQGRVDRTIANYDAMAERIAQVPGVQRAAPLVKGQVLITNRDRSSGAEVFGIRPDDLL 139
Query: 106 QIVGDQEADVQSG-------LVSISSPIARALIGKELGDIISVNAPGGEKT 149
+ G E+D G ++I S +ARA IG +GD + + +P G KT
Sbjct: 140 SLPGIAESDQAYGDLTRFEEGIAIGSGVARA-IGATVGDRVKLTSPNGVKT 189
>gi|239608499|gb|EEQ85486.1| predicted protein [Ajellomyces dermatitidis ER-3]
Length = 430
Score = 37.9 bits (87), Expect = 0.48, Method: Composition-based stats.
Identities = 16/87 (18%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
Query: 4 KIPVTSKGFDKIQQELRWRQQEERP-----RIIKAISEARAYGDL--SENAEYQAAKELQ 56
K+P+T + + + +E++ + EER ++++ EA G N + L+
Sbjct: 118 KVPMTMEEDNALVKEIKHLKGEERRLKGVIKVLEEDKEAMQLGQDHIKRNPVLANIQGLR 177
Query: 57 NLNEGRMAELENIITRAEVIDISTMSG 83
+ E ++ +E++ T G
Sbjct: 178 HHLEELTRAPNKALSSSEILPEVTTPG 204
>gi|254509482|ref|ZP_05121549.1| lipoprotein releasing system transmembrane protein LolE
[Rhodobacteraceae bacterium KLH11]
gi|221533193|gb|EEE36181.1| lipoprotein releasing system transmembrane protein LolE
[Rhodobacteraceae bacterium KLH11]
Length = 487
Score = 37.9 bits (87), Expect = 0.48, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 21/138 (15%)
Query: 27 RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
R + I A A+ + + A Q + +A+ + + R + + +
Sbjct: 117 RSEFVGTILGANAHVSVYSAGDLNA----QGRLDRTIADFDAMAERVAQVPGVERAAPLV 172
Query: 87 AFGATVSLVEKNSGDKKNYQIVGDQEADVQ---------------SGLVSISSPIARALI 131
++ ++++G + + I D D+ ++I S +ARA I
Sbjct: 173 KGQVLITNADRSTG-VQVFGIRPDDLNDLPGIAESEQAYGDLSRFPDGIAIGSGVARA-I 230
Query: 132 GKELGDIISVNAPGGEKT 149
G +GD + + +P G KT
Sbjct: 231 GATVGDRVKLTSPNGVKT 248
>gi|88859698|ref|ZP_01134338.1| hypothetical protein PTD2_21982 [Pseudoalteromonas tunicata D2]
gi|88818715|gb|EAR28530.1| hypothetical protein PTD2_21982 [Pseudoalteromonas tunicata D2]
Length = 161
Score = 37.9 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
A + +++ S+P+ AL+GK L D +++ G ++T+ I +V
Sbjct: 118 AGQKVTVITPSAPLGAALVGKYLDDEVTIMVAGKKQTWSIDKV 160
>gi|332526113|ref|ZP_08402251.1| hypothetical protein RBXJA2T_09667 [Rubrivivax benzoatilyticus JA2]
gi|332109956|gb|EGJ10584.1| hypothetical protein RBXJA2T_09667 [Rubrivivax benzoatilyticus JA2]
Length = 25
Score = 37.9 bits (87), Expect = 0.52, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 135 LGDIISVNAPGGEKTYEILQVLWI 158
GD+ V APGG + +EI++V ++
Sbjct: 2 AGDVAEVQAPGGVRHWEIVEVKYL 25
>gi|152988368|ref|YP_001349710.1| hypothetical protein PSPA7_4357 [Pseudomonas aeruginosa PA7]
gi|150963526|gb|ABR85551.1| hypothetical protein PSPA7_4357 [Pseudomonas aeruginosa PA7]
Length = 169
Score = 37.9 bits (87), Expect = 0.53, Method: Composition-based stats.
Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 16/138 (11%)
Query: 29 RIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSGD 84
R + E+ + + +Y R+ E+ + + + +
Sbjct: 34 RAAQTAHESATHEENVAENKYDTLGLEAAYLAAGQSRRVEEIRQALNLYRNLALRDFDEE 93
Query: 85 R-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVSISSPIARALIGKELG 136
+ I A V+L+ + + + +G A ++ +++ SP+ ++L+GK+ G
Sbjct: 94 QGIQLSALVTLLNTDGSRRVVF--LGPAAAGLKVDCEGREVLVITPRSPLGQSLLGKQPG 151
Query: 137 DIISVNAPGGEKTYEILQ 154
D P + EIL
Sbjct: 152 DTAGPKDP--RQAVEILA 167
>gi|188583385|ref|YP_001926830.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001]
gi|179346883|gb|ACB82295.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001]
Length = 149
Score = 37.5 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
S D +A V + + +++V +S +S + A++G GD
Sbjct: 50 ASPPPRDVVAVTCRVRYRLDDEPTVRAHRLVYPGHVIASEEEISAASALGVAMLGLRRGD 109
Query: 138 IISV--NAPGGEKTYEILQV 155
I NA G E EI V
Sbjct: 110 RIPFRDNATGSEHVVEIADV 129
>gi|302187682|ref|ZP_07264355.1| hypothetical protein Psyrps6_15104 [Pseudomonas syringae pv.
syringae 642]
Length = 160
Score = 37.5 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 23/153 (15%), Positives = 53/153 (34%), Gaps = 17/153 (11%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELEN 68
+K++ +L R + E + + +Y + R+ E+
Sbjct: 12 EKLKIDLD-----IAERAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQ 66
Query: 69 IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVS 121
+ + R + +VE G + G A ++ +++
Sbjct: 67 SLALYRKWPLKPFDESRGIQTGDLVVVEDAGGQTHCLFL-GPDAAGLKVSEGNRLVTVIT 125
Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+P+ ++L+GK D + + G ++YEI Q
Sbjct: 126 ARAPLGQSLLGKFEDDAVQIVINGSGQSYEITQ 158
>gi|302690308|ref|XP_003034833.1| hypothetical protein SCHCODRAFT_232138 [Schizophyllum commune H4-8]
gi|300108529|gb|EFI99930.1| hypothetical protein SCHCODRAFT_232138 [Schizophyllum commune H4-8]
Length = 1576
Score = 37.5 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 45/126 (35%), Gaps = 9/126 (7%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEAR----AYGDLSENAEYQAAKELQNL 58
K + + D I + RQ R + A AR + +++ Y A +E Q
Sbjct: 119 RKRKLAQEALDAIDADPEVRQATRRKHVGAAEPIARPAALEHLPVTKTG-YTAKREPQR- 176
Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
GR + V S D + + ++ GD++ + I+ + A + G
Sbjct: 177 --GRAQHRTYRLEDM-VGPDSMYKFDLVRWEGRKTVPYVTPGDERVFMILAGRPAPPEGG 233
Query: 119 LVSISS 124
+S
Sbjct: 234 ATEANS 239
>gi|289626936|ref|ZP_06459890.1| hypothetical protein PsyrpaN_17614 [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289649421|ref|ZP_06480764.1| hypothetical protein Psyrpa2_17003 [Pseudomonas syringae pv.
aesculi str. 2250]
gi|330866114|gb|EGH00823.1| hypothetical protein PSYAE_02442 [Pseudomonas syringae pv. aesculi
str. 0893_23]
Length = 160
Score = 37.5 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 17/164 (10%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60
++K V DK++ +L R + E + + +Y +
Sbjct: 1 MNKQDVLQSIIDKLEIDLD-----IAQRAAQTAYETATHEENIAENKYDTLGLEASYLAA 55
Query: 61 ---GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
R+ E+ + + R + VE SG + Y +G A ++
Sbjct: 56 GQARRVEEIRQSLAAYRKWSLKPFDESRGIQTGDLVAVEALSGQTQ-YLFLGPDAAGLKV 114
Query: 118 G-------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+++ +P+ ++L+GK D + + G ++YEI Q
Sbjct: 115 SAGEQLVTVITAKAPLGQSLLGKFEDDAVQIVINGSGQSYEITQ 158
>gi|330950317|gb|EGH50577.1| transcription elongation factor GreA [Pseudomonas syringae Cit 7]
Length = 31
Score = 37.5 bits (86), Expect = 0.59, Method: Composition-based stats.
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIK 32
+ K P+T +G +++EL + RP++ +
Sbjct: 1 MIKYPMTVQGARALEEELTHLTKVVRPKLSQ 31
>gi|163754512|ref|ZP_02161634.1| 3-oxoacyl-(acyl carrier protein) synthase [Kordia algicida OT-1]
gi|161325453|gb|EDP96780.1| 3-oxoacyl-(acyl carrier protein) synthase [Kordia algicida OT-1]
Length = 149
Score = 37.5 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 10/143 (6%)
Query: 18 ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVID 77
E+ +Q+ I EA S + E +L N + + +
Sbjct: 13 EIVNNRQKTVQESFARIQEAMLSETKSSAGDKHETGRAMLQLERE--KLGNQLAEIQKVK 70
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQSGL-VSISSPIARALIGK 133
D A + L + NY I VG+ A+ + ++ ++PI + L+GK
Sbjct: 71 EILHKVDAAATVSQGCLGSVIYTSQANYFISVSVGEITANNEKFYAIATNTPIGKLLLGK 130
Query: 134 ELGDIISVNAPGGEKTYEILQVL 156
++ DII+ +++ I ++
Sbjct: 131 KVDDIITFR----NQSFVIEKIS 149
>gi|163751718|ref|ZP_02158936.1| transcription elongation factor [Shewanella benthica KT99]
gi|161328370|gb|EDP99529.1| transcription elongation factor [Shewanella benthica KT99]
Length = 194
Score = 37.1 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 95 VEKNSGDKKNYQIVGDQEADVQSG-----LVSISSPIARALIGKELGDIISVNAPGGEKT 149
++ + + + + +++ SSP+ + L+GK L D + +N K
Sbjct: 128 IDLETDKNTDIDLAAVCHKNSNKEQLMITVITPSSPLGQLLMGKYLDDSVRLNIGEQPKV 187
Query: 150 YEILQVL 156
YEI V
Sbjct: 188 YEITGVE 194
>gi|71733605|ref|YP_275793.1| hypothetical protein PSPPH_3651 [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|71554158|gb|AAZ33369.1| conserved hypothetical protein [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320327533|gb|EFW83545.1| hypothetical protein PsgRace4_23943 [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330876663|gb|EGH10812.1| hypothetical protein Pgy4_09963 [Pseudomonas syringae pv. glycinea
str. race 4]
Length = 160
Score = 37.1 bits (85), Expect = 0.86, Method: Composition-based stats.
Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 21/166 (12%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN----AEYQAAKELQN 57
++K V DK++ +L Q+ + A E + + A Y AA + +
Sbjct: 1 MNKQDVLQSIIDKLEIDLDIAQRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARR 60
Query: 58 LNEGRMAELENIITRAEVIDIST--MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
+ E R + + D S +GD +A A G + Y +G A +
Sbjct: 61 VEEIRQSLAAYRKWSLKPFDESRGIQTGDLVAVEAL--------GGQTQYLFLGPDAAGL 112
Query: 116 QSG-------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+ +++ +P+ ++L+GK D + + G ++YEI Q
Sbjct: 113 KVSAGEQLVTVITAKAPLGQSLLGKFEDDAVQIVINGSGQSYEITQ 158
>gi|13473407|ref|NP_104974.1| nucleoside diphosphate kinase regulator, Rnk [Mesorhizobium loti
MAFF303099]
gi|14024156|dbj|BAB50760.1| nucleoside diphosphate kinase regulator; Rnk [Mesorhizobium loti
MAFF303099]
Length = 180
Score = 37.1 bits (85), Expect = 0.89, Method: Composition-based stats.
Identities = 21/108 (19%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 58 LNEGRMAE-------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
+ E R A LE+ ++ A+V+ I T+ D + + V ++G + +V +
Sbjct: 19 MLERRRAFADPIVHVLEHKLSSADVVPIDTVGPDIVTLNSRVVFS-IDAGHAQTRTLVQN 77
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+ +S+++ ++G G S+ G + I VL+
Sbjct: 78 EVRGPVGSSLSVATRRGLCMLGMAQGQTASIEHADGRRESILIKAVLY 125
>gi|319780960|ref|YP_004140436.1| nucleoside diphosphate kinase regulator, Rnk [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317166848|gb|ADV10386.1| nucleoside diphosphate kinase regulator, Rnk [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 184
Score = 36.7 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 9/108 (8%)
Query: 58 LNEGRMAE-------LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
+ E R A LE+ +++AEV+ I ++ D + + + ++G + +V +
Sbjct: 23 MLERRRAFADPIVPMLEDKLSKAEVVAIDSVGSDIVTLNSRLVFR-VDAGPAQTRTLVQN 81
Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
+ +SI + ++G G + G + I VL+
Sbjct: 82 EVRGPVGSSLSIMTRRGLCMLGMAEGQTAWIEQADGRRESVLIATVLY 129
>gi|260901412|ref|ZP_05909807.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
gi|308107211|gb|EFO44751.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037]
gi|328471242|gb|EGF42144.1| hypothetical protein VP10329_03517 [Vibrio parahaemolyticus 10329]
Length = 138
Score = 36.7 bits (84), Expect = 1.00, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 38/73 (52%)
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
RIA G TV LV+ + + +V +++ +G++++ S + L+G+ +++ +
Sbjct: 49 RIAIGDTVRLVDLDRSYQYRMTLVDSRKSQPLAGMLAVDSYLGSRLLGRSQDEVLELEIF 108
Query: 145 GGEKTYEILQVLW 157
+ + I +++
Sbjct: 109 NQRRCFVITEIIH 121
>gi|262392779|ref|YP_003284633.1| hypothetical protein VEA_002005 [Vibrio sp. Ex25]
gi|262336373|gb|ACY50168.1| hypothetical protein VEA_002005 [Vibrio sp. Ex25]
Length = 138
Score = 36.7 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 34/73 (46%)
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
RIA G TV LV+ + +V ++ +G++++ S + L+G+ D +
Sbjct: 49 RIAVGDTVRLVDVERAYQYRMTLVNSHKSQPMTGMLAVDSYLGSRLLGRAKNDAFEIEIF 108
Query: 145 GGEKTYEILQVLW 157
+ + I +++
Sbjct: 109 NQRRCFVITEIVH 121
>gi|225012479|ref|ZP_03702915.1| GreA/GreB family elongation factor [Flavobacteria bacterium
MS024-2A]
gi|225003456|gb|EEG41430.1| GreA/GreB family elongation factor [Flavobacteria bacterium
MS024-2A]
Length = 148
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 59/144 (40%), Gaps = 15/144 (10%)
Query: 18 ELRWRQQEERPRIIK--AISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEV 75
E + EE+ ++++ +SE+++ + + ++AELE +
Sbjct: 15 EAKRLLLEEQKKVLQGALMSESKSSAGDKHETGRAMVQLDREKLGNQIAELEQNQQKLNT 74
Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ--EADVQSGL-VSISSPIARALIG 132
+ + ++ G+ V + + Y + E D + +S SPI + LIG
Sbjct: 75 LKNHKTTTS-VSLGSVVL-----TDKENYYISIATNFCEIDAKKYYCISAQSPIGKLLIG 128
Query: 133 KELGDIISVNAPGGEKTYEILQVL 156
K++ D I N ++ IL++
Sbjct: 129 KKVNDKIEFN----KRLSTILEIR 148
>gi|269928504|ref|YP_003320825.1| hypothetical protein Sthe_2589 [Sphaerobacter thermophilus DSM
20745]
gi|269787861|gb|ACZ40003.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM
20745]
Length = 1164
Score = 36.7 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENA-EYQAAKELQNLNEGRM 63
+ VT +G++ +++E R E R R + EAR L E A Y AA+ + R+
Sbjct: 180 VRVTREGYEHLRRE-EARLDELRER-AQRAMEARDRAALLEQALAYAAARRTLDEARERL 237
Query: 64 AELENIITR 72
A ++ R
Sbjct: 238 ATFPEVLAR 246
>gi|257485831|ref|ZP_05639872.1| hypothetical protein PsyrptA_21361 [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|330986650|gb|EGH84753.1| hypothetical protein PLA107_16617 [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012920|gb|EGH92976.1| hypothetical protein PSYTB_25299 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 160
Score = 36.3 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 59/165 (35%), Gaps = 19/165 (11%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60
++K V DK++ +L R + E + + +Y +
Sbjct: 1 MNKQDVLQSIIDKLEIDLD-----IAQRAAQTAYETATHEENIAENKYDTLGLEASYLAA 55
Query: 61 ---GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS-GDKKNYQIVGDQEADVQ 116
R+ E+ + S D T L+ + G + Y +G A ++
Sbjct: 56 GQARRVEEIRQSLAAYR--KWSLKPFDESRGIQTGDLIAVEALGGQTQYLFLGPDAAGLK 113
Query: 117 SG-------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
+++ +P+ ++L+GK D + + G ++YEI Q
Sbjct: 114 VSAGEQLVTVITAKAPLGQSLLGKFEDDAVQIVINGSGQSYEITQ 158
>gi|255292504|dbj|BAH89619.1| UvrD/Rep helicase family protein [uncultured bacterium]
gi|255292794|dbj|BAH89898.1| UvrD/Rep helicase family protein [uncultured bacterium]
gi|255293040|dbj|BAH90135.1| UvrD/Rep helicase family protein [uncultured bacterium]
Length = 909
Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 93 SLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
+V +G+++ Y I L S +P+ R L +G P G E+
Sbjct: 82 VVVVDEAGEERTYYICRTSPVSGFPNLASYRAPVGR-LASLAIG--AEFTLPNGTV-VEV 137
Query: 153 LQ 154
L+
Sbjct: 138 LE 139
>gi|229817908|ref|ZP_04448190.1| hypothetical protein BIFANG_03194 [Bifidobacterium angulatum DSM
20098]
gi|229784512|gb|EEP20626.1| hypothetical protein BIFANG_03194 [Bifidobacterium angulatum DSM
20098]
Length = 44
Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 7 VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYG 41
+T + +DK+Q+EL+WR+ E R II +S ARA G
Sbjct: 10 LTQEAYDKMQEELKWREGEYRDEIIAKVSAARAEG 44
>gi|84499275|ref|ZP_00997563.1| hypothetical protein OB2597_05090 [Oceanicola batsensis HTCC2597]
gi|84392419|gb|EAQ04630.1| hypothetical protein OB2597_05090 [Oceanicola batsensis HTCC2597]
Length = 1334
Score = 36.3 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 13/72 (18%), Positives = 29/72 (40%)
Query: 85 RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
++ T ++ N+ D I ++ +A+ L+GK++GD I +
Sbjct: 808 QVVEPDTAVVLSGNNRDDIVRIIEAAPAPQSTRDEIAPDDALAQRLMGKKVGDQIEMEGL 867
Query: 145 GGEKTYEILQVL 156
G I +++
Sbjct: 868 NGPYALTIKEIV 879
>gi|322829088|gb|EFZ32636.1| hypothetical protein TCSYLVIO_1016 [Trypanosoma cruzi]
Length = 668
Score = 36.3 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISE-ARAYGDLSENAEYQAAKELQNLNEG 61
+K+ + +G + Q+EL + ER + + E AR + E +AA+E Q E
Sbjct: 570 EKLQLLQEGQRRRQEEL-HVKLLERAAKSEELRELARQRAGMREEKVRKAAEEQQRKVEE 628
Query: 62 RMAEL 66
R++
Sbjct: 629 RLSRF 633
>gi|198429125|ref|XP_002121936.1| PREDICTED: similar to Serine/threonine-protein kinase QSK
(Salt-inducible kinase 3) (SIK-3) (SIK3) [Ciona
intestinalis]
Length = 1424
Score = 36.3 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN- 59
+VDK + + KI +E+ ++ P IIK + L EY ++ E+ +
Sbjct: 59 IVDKTQLDKENLKKIYREIEIMKELRHPHIIKLYQVMQTENKLFLVTEYASSGEIFDHLV 118
Query: 60 -EGRMAELENIITRAEVI 76
GRMAE E I +++
Sbjct: 119 AHGRMAEREARIKFKQIV 136
>gi|296283928|ref|ZP_06861926.1| hypothetical protein CbatJ_09906 [Citromicrobium bathyomarinum
JL354]
Length = 187
Score = 36.3 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 13/76 (17%)
Query: 12 FDKIQQELRWRQQEE-------------RPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
++++ L ++E R R+ + + AR D NAE A E
Sbjct: 69 LAQLRERLDEVERERDLLETALSSATDARGRLERDLRTAREEADSRSNAEASAQAERIAT 128
Query: 59 NEGRMAELENIITRAE 74
E R A+L++ + A+
Sbjct: 129 LEKRCADLQHRLEDAQ 144
>gi|110639694|ref|YP_679904.1| hypothetical protein CHU_3322 [Cytophaga hutchinsonii ATCC 33406]
gi|110282375|gb|ABG60561.1| hypothetical protein CHU_3322 [Cytophaga hutchinsonii ATCC 33406]
Length = 150
Score = 36.3 bits (83), Expect = 1.6, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 9/127 (7%)
Query: 21 WRQQEERPRIIKAISEARAY-----GDLSENAEYQAAKELQNLNEGRMAELENIITRAEV 75
R + I K S A GD E A E++ N +++E E + +
Sbjct: 18 ERITRLKTEIKKTQSSANEETKSSAGDKYETGRAMAQLEIEK-NTKQLSEAEKLEGMMQA 76
Query: 76 IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135
I +S + I G+ V+ + + I D Q +++ SPI + +GK+
Sbjct: 77 IVTDRIS-EIIIPGSLVTTSKGIF--YISISIGLITFQDKQYFIIAPDSPIGKLFMGKKT 133
Query: 136 GDIISVN 142
GD +S N
Sbjct: 134 GDTVSWN 140
>gi|313105977|ref|ZP_07792238.1| hypothetical protein PA39016_000130013 [Pseudomonas aeruginosa
39016]
gi|310878740|gb|EFQ37334.1| hypothetical protein PA39016_000130013 [Pseudomonas aeruginosa
39016]
Length = 158
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 23/159 (14%)
Query: 16 QQELRWRQQEERPR----IIKAISEARAYGDLSENA---EYQAAKELQNLNE----GRMA 64
+++L E+ ++A A EN +Y R+
Sbjct: 3 KKQLLRLITEKLAADLEVAVRAAQTAHETATHEENVAENKYDTLGLEAAYLAAGQSRRVE 62
Query: 65 ELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----- 118
E+ + ++ I A V+L+ + G ++ + G + A ++
Sbjct: 63 EIRQALGLYRNLVLRDFDEEQGIQLTALVTLLNAD-GSRRTVFL-GPEAAGLKIDCEGRE 120
Query: 119 --LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+++ SP+ ++LIG+ GD A EIL V
Sbjct: 121 VLVITPRSPLGQSLIGRHPGDET--GAKDSPLAVEILAV 157
>gi|262199267|ref|YP_003270476.1| hypothetical protein Hoch_6108 [Haliangium ochraceum DSM 14365]
gi|262082614|gb|ACY18583.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
Length = 174
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
+V+ +P+ + L+G+ +GD + + PGG + +
Sbjct: 137 VVTPEAPVGKLLLGRRVGDELHLPGPGGGREVVV 170
>gi|256077824|ref|XP_002575200.1| heart-specific myosin light chain phosphatase small subunit
[Schistosoma mansoni]
gi|238660431|emb|CAZ31433.1| heart-specific myosin light chain phosphatase small subunit,
putative [Schistosoma mansoni]
Length = 200
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKE--LQNLNEGRMAELENI 69
+ ++ +E + R + A E + D EN+ + Q E R++E E
Sbjct: 109 YKQLYEEEKILTNGLREEVKAAQKELKELEDALENSVGRRRPSEVEQRKMERRISECEQE 168
Query: 70 IT 71
+
Sbjct: 169 LK 170
>gi|319794569|ref|YP_004156209.1| hypothetical protein Varpa_3924 [Variovorax paradoxus EPS]
gi|315597032|gb|ADU38098.1| hypothetical protein Varpa_3924 [Variovorax paradoxus EPS]
Length = 894
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 93 SLVEKNSGDKKNYQIVGDQE-ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY 150
+V NSG+++ Y + ++ L+S SP+ A+ +E+GD + P G
Sbjct: 82 VVVVDNSGEERTYYVCRTSPPTGLRVPLISYRSPVG-AMASREVGDRFT--LPNGNVVV 137
>gi|305665869|ref|YP_003862156.1| hypothetical protein FB2170_06295 [Maribacter sp. HTCC2170]
gi|88710644|gb|EAR02876.1| hypothetical protein FB2170_06295 [Maribacter sp. HTCC2170]
Length = 152
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 20/135 (14%)
Query: 31 IKAISEARAYGDLSENAEYQAAKELQNLNEG-----RMAELENIITRAEVIDISTMSGDR 85
IK + EA S + E ++AE+E + +DI+T
Sbjct: 29 IKEVHEALGSETKSSAGDKHETGRAMLQLEREKLGTQLAEVEKMAKIINKVDITTKKDSA 88
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL----VSISSPIARALIGKELGDIISV 141
+ D NY + + +S+++PI L+GK++ D+I
Sbjct: 89 SLGSLVCT-------DSSNYFLAISAGEYKSTEKRTYCISMNTPIGIILLGKKVDDVIDF 141
Query: 142 NAPGGEKTYEILQVL 156
N +ILQVL
Sbjct: 142 NG----NQIKILQVL 152
>gi|330889328|gb|EGH21989.1| hypothetical protein PSYMO_10970 [Pseudomonas syringae pv. mori
str. 301020]
Length = 160
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 14/139 (10%)
Query: 28 PRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITRAEVIDISTMSG 83
R + E + + +Y + R+ E+ + S
Sbjct: 22 QRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQSLAAYR--KWSLKPF 79
Query: 84 DRIAFGATVSLVEKNS-GDKKNYQIVGDQEADVQSG-------LVSISSPIARALIGKEL 135
D T L+ + G + Y +G A ++ +++ +P+ ++L+GK
Sbjct: 80 DESRGIQTGDLIAVEALGGQTQYLFLGPDAAGLKVSAGEQLVTVITAKAPLGQSLLGKFE 139
Query: 136 GDIISVNAPGGEKTYEILQ 154
D + + G ++YEI Q
Sbjct: 140 DDAVQIVINGSGQSYEITQ 158
>gi|294954226|ref|XP_002788062.1| calpain, putative [Perkinsus marinus ATCC 50983]
gi|239903277|gb|EER19858.1| calpain, putative [Perkinsus marinus ATCC 50983]
Length = 919
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 9 SKGFD-KIQQELRWRQQEERPRIIKAISEA-RAYGDLSENAEYQAAKELQNLNEGRMAEL 66
G + K++++ + R+ E+ KA +E R +E A Y +++ R+
Sbjct: 800 QAGRERKMREQRQRREAVEQHAEEKAKAEMKRRQQKAAERAAYLTSRDRLTEKLKRVNPK 859
Query: 67 EN-----IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104
++R EVI ST+S + + + + +++
Sbjct: 860 AYGIVLSRMSREEVIKYSTISDKEVLIHLVETKMNGDKEEEQT 902
>gi|302791028|ref|XP_002977281.1| hypothetical protein SELMODRAFT_176144 [Selaginella moellendorffii]
gi|300155257|gb|EFJ21890.1| hypothetical protein SELMODRAFT_176144 [Selaginella moellendorffii]
Length = 435
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 106 QIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
++GD + + +S S + R L ++GD I+V GE+T +I
Sbjct: 381 LVLGDIITSINNQKISNGSDLYRVLDRCKVGDKITVEVLRGEETVKI 427
>gi|302821006|ref|XP_002992168.1| hypothetical protein SELMODRAFT_134817 [Selaginella moellendorffii]
gi|300140094|gb|EFJ06823.1| hypothetical protein SELMODRAFT_134817 [Selaginella moellendorffii]
Length = 413
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 106 QIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
++GD + + +S S + R L ++GD I+V GE+T +I
Sbjct: 359 LVLGDIITSINNQKISNGSDLYRVLDRCKVGDKITVEVLRGEETVKI 405
>gi|71664421|ref|XP_819191.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70884482|gb|EAN97340.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 784
Score = 36.0 bits (82), Expect = 2.0, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISE-ARAYGDLSENAEYQAAKELQNLNEG 61
+K+ + +G + Q+EL + ER + + E AR ++ E +AA+E Q E
Sbjct: 575 EKLQLLQEGQRRRQEEL-HVKLLERAAKSEELRELARQRAEMREEKVRKAAEEQQRKVEE 633
Query: 62 RMAEL 66
R++
Sbjct: 634 RLSRF 638
>gi|313672008|ref|YP_004050119.1| hypothetical protein Calni_0040 [Calditerrivibrio nitroreducens DSM
19672]
gi|312938764|gb|ADR17956.1| protein of unknown function DUF214 [Calditerrivibrio nitroreducens
DSM 19672]
Length = 837
Score = 35.6 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 132 GKELGDIISVNAPGGEKTYEILQV 155
G + GD I ++ P G+ ++I +V
Sbjct: 605 GLKEGDTIEIDTPKGKVKFKIREV 628
>gi|195997991|ref|XP_002108864.1| hypothetical protein TRIADDRAFT_52286 [Trichoplax adhaerens]
gi|190589640|gb|EDV29662.1| hypothetical protein TRIADDRAFT_52286 [Trichoplax adhaerens]
Length = 750
Score = 35.6 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 21/137 (15%), Positives = 47/137 (34%), Gaps = 17/137 (12%)
Query: 2 VDKIPVTS---KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
+KI + +GF+ +EL + E R + E + A +Q + +
Sbjct: 579 SEKIELLQKNIEGFETSNRELELQLIEHRRMVEDEKQERTKLKEAIRGAVFQERDKWERE 638
Query: 59 NEGRMA------------ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106
+ R+ E + E+++ + + S+ + ++K
Sbjct: 639 CDKRVKASQLQMKSKLWETDEKLRLLKEIVESTPTKRKSVGVNVLSSIDKLEEKERKRKS 698
Query: 107 IVGDQEADVQSGLVSIS 123
+ ADV +SI+
Sbjct: 699 --SESSADVDENSISIT 713
>gi|227537169|ref|ZP_03967218.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33300]
gi|227242884|gb|EEI92899.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC
33300]
Length = 136
Score = 35.6 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 10/141 (7%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
M D + + I+Q R E +++A A S +Y+ ++E+ +
Sbjct: 1 MKDPLQLKENLVKHIKQATDRRLLEIDTALVQAQESANDDTKSSAGDKYETSREMIQQDI 60
Query: 61 GRMAELE-NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQ 116
R+ + +I ++I+ G + + + + + Y + +G D
Sbjct: 61 NRLQQQRAEVIRELDIINKIEPEGAEVGKLGALVVTD-----RFTYFVATSLGQLVIDGD 115
Query: 117 S-GLVSISSPIARALIGKELG 136
+VS SPI + LIGK G
Sbjct: 116 KYAVVSAQSPIGKQLIGKGKG 136
>gi|291280251|ref|YP_003497086.1| ABC transporter permease [Deferribacter desulfuricans SSM1]
gi|290754953|dbj|BAI81330.1| ABC transporter, permease [Deferribacter desulfuricans SSM1]
Length = 833
Score = 35.6 bits (81), Expect = 2.6, Method: Composition-based stats.
Identities = 7/24 (29%), Positives = 17/24 (70%)
Query: 132 GKELGDIISVNAPGGEKTYEILQV 155
G ++GD I ++ P G++ ++I ++
Sbjct: 601 GLKVGDFIEIDTPKGKEKFKIREI 624
>gi|196231498|ref|ZP_03130356.1| protein of unknown function DUF1549 [Chthoniobacter flavus
Ellin428]
gi|196224351|gb|EDY18863.1| protein of unknown function DUF1549 [Chthoniobacter flavus
Ellin428]
Length = 773
Score = 35.6 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
P+T + + +Q + + +R Y D + NA ++ + Q E ++AE
Sbjct: 365 PITQEDYYSLQADFAALDRTDRKY----------YRDDATNARFRELQRRQQQVESQLAE 414
Query: 66 LENII 70
LE +
Sbjct: 415 LEKPL 419
>gi|71423067|ref|XP_812329.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70877099|gb|EAN90478.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 780
Score = 35.2 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 3 DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISE-ARAYGDLSENAEYQAAKELQNLNEG 61
+K+ + +G + Q+EL + ER + + E AR ++ E +AA+E Q E
Sbjct: 571 EKLQLLQEGQRRRQEEL-HVKLLERAAKSEELRELARQRAEMREEKVRKAAEEQQQKVEE 629
Query: 62 RMAEL 66
R++
Sbjct: 630 RLSRF 634
>gi|126662004|ref|ZP_01733003.1| hypothetical protein FBBAL38_01595 [Flavobacteria bacterium BAL38]
gi|126625383|gb|EAZ96072.1| hypothetical protein FBBAL38_01595 [Flavobacteria bacterium BAL38]
Length = 149
Score = 35.2 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
VS SP+ L+GK LGD + +NA ++I +
Sbjct: 117 VSPQSPLGSQLLGKSLGDEVVINA----NRFQIKSIQ 149
>gi|49080842|gb|AAT50064.1| PA1026 [synthetic construct]
Length = 159
Score = 35.2 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 21/166 (12%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60
+DK + +K+ +L R + E + + +Y
Sbjct: 1 MDKKKLLRLITEKLAADLE-----VAVRAAQTAHETATHEENVAENKYDTLGLEAAYLAA 55
Query: 61 ---GRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
R+ E+ + ++ I A V+L+ + G ++ + G + A ++
Sbjct: 56 GQSRRVEEIRRALGLYRNLVLRDFDEEQGIQLTALVTLLNAD-GSRRTVFL-GPEAAGLK 113
Query: 117 SG-------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+++ SP+ ++LIG+ GD A EIL V
Sbjct: 114 IDCEGREVLVITPRSPLGQSLIGRHPGDET--GAKDSPLAVEILAV 157
>gi|258622962|ref|ZP_05717977.1| conserved hypothetical protein [Vibrio mimicus VM573]
gi|258584745|gb|EEW09479.1| conserved hypothetical protein [Vibrio mimicus VM573]
Length = 140
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+ + RI G TVSLV+ + +V + D G V+ S + AL G+ +
Sbjct: 44 PTERAPHRIKLGDTVSLVDAHRQLAFQVTLVVPEHQDEIHGGVTCDSLLGAALFGRRQHE 103
Query: 138 IISVNAPGGEKTYEILQVLWI 158
+ ++ G + I V I
Sbjct: 104 VFELSIWGQRHCFAITHVKHI 124
>gi|258626086|ref|ZP_05720937.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|262172782|ref|ZP_06040460.1| hypothetical protein VII_003613 [Vibrio mimicus MB-451]
gi|258581612|gb|EEW06510.1| conserved hypothetical protein [Vibrio mimicus VM603]
gi|261893858|gb|EEY39844.1| hypothetical protein VII_003613 [Vibrio mimicus MB-451]
Length = 140
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 34/81 (41%)
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
+ + RI G TVSLV+ + +V + D G V+ S + AL G+ +
Sbjct: 44 PTERAPHRIKLGDTVSLVDAHRQLAFQVTLVVPEHQDEIHGGVTCDSLLGAALFGRRQHE 103
Query: 138 IISVNAPGGEKTYEILQVLWI 158
+ ++ G + I V I
Sbjct: 104 VFELSIWGQRHCFAITHVKHI 124
>gi|268324327|emb|CBH37915.1| hypothetical secreted protein [uncultured archaeon]
Length = 524
Score = 35.2 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 6/114 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
++I E+ Q + ++ EY+ A ++ NEG E +
Sbjct: 234 NRIDAEVYMLMQAKLGKLDDEELGITFDAPRGTKQEYEKAIYVRVTNEG----DEKMAFS 289
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD--VQSGLVSISS 124
+++I+ + I+ + + V+ + + QI A G + I +
Sbjct: 290 SKIIEPREIDMKIISVYSGLVEVDGKADEDVEIQITAPYYASEATHHGKLQIDA 343
>gi|195119902|ref|XP_002004468.1| GI19951 [Drosophila mojavensis]
gi|193909536|gb|EDW08403.1| GI19951 [Drosophila mojavensis]
Length = 2411
Score = 35.2 bits (80), Expect = 3.4, Method: Composition-based stats.
Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 13 DKIQQEL-----RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
++++EL + ++E+R + + + E + + + + KE Q L E + + E
Sbjct: 1330 QRLKEELRLKEEQRLKEEQRLKEEQRLKEEQRLKEEQRLKDEERLKEEQRLKEEQRLKEE 1389
Query: 68 NIITRAE 74
+ +
Sbjct: 1390 QRLKEEQ 1396
Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
++++E + ++E+R + + + E + D E Q KE Q L E + + E +
Sbjct: 1342 QRLKEE-QRLKEEQRLKEEQRLKEEQRLKDEERLKEEQRLKEEQRLKEEQRLKEEQL 1397
>gi|77550642|gb|ABA93439.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 692
Score = 35.2 bits (80), Expect = 3.5, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 6 PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL-NEGRMA 64
P T ++++Q E+ + + + I+EAR S N E RM+
Sbjct: 356 PATVLTWEELQVEMGCLLEAGARGVSREIAEARVAAGSSANERADRLARDLAEGLEHRMS 415
Query: 65 ELENIITRAE 74
ELEN ++
Sbjct: 416 ELENKLSEIR 425
>gi|15596223|ref|NP_249717.1| hypothetical protein PA1026 [Pseudomonas aeruginosa PAO1]
gi|107100470|ref|ZP_01364388.1| hypothetical protein PaerPA_01001495 [Pseudomonas aeruginosa PACS2]
gi|218893012|ref|YP_002441881.1| hypothetical protein PLES_42971 [Pseudomonas aeruginosa LESB58]
gi|254239383|ref|ZP_04932706.1| hypothetical protein PACG_05582 [Pseudomonas aeruginosa C3719]
gi|9946938|gb|AAG04415.1|AE004535_2 hypothetical protein PA1026 [Pseudomonas aeruginosa PAO1]
gi|126171314|gb|EAZ56825.1| hypothetical protein PACG_05582 [Pseudomonas aeruginosa C3719]
gi|218773240|emb|CAW29052.1| hypothetical protein PLES_42971 [Pseudomonas aeruginosa LESB58]
Length = 158
Score = 34.8 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 21/166 (12%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60
+DK + +K+ +L R + E + + +Y
Sbjct: 1 MDKKKLLRLITEKLAADLE-----VAVRAAQTAHETATHEENVAENKYDTLGLEAAYLAA 55
Query: 61 ---GRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
R+ E+ + ++ I A V+L+ + G ++ + G + A ++
Sbjct: 56 GQSRRVEEIRQALGLYRNLVLRDFDEEQGIQLTALVTLLNAD-GSRRTVFL-GPEAAGLK 113
Query: 117 SG-------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+++ SP+ ++LIG+ GD A EIL V
Sbjct: 114 IDCEGREVLVITPRSPLGQSLIGRHPGDET--GAKDSPLAVEILAV 157
>gi|257055412|ref|YP_003133244.1| sortase (surface protein transpeptidase) [Saccharomonospora viridis
DSM 43017]
gi|256585284|gb|ACU96417.1| sortase (surface protein transpeptidase) [Saccharomonospora viridis
DSM 43017]
Length = 226
Score = 34.8 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 98 NSGDKKNYQIV-GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEIL 153
+ G ++ +V G +G P A AL G +GD ++V P G + Y ++
Sbjct: 120 DFGAERGVSLVAGHVNWHGTNG------PFA-ALWGHRVGDEVTVRDPEGREWVYRVV 170
>gi|296390614|ref|ZP_06880089.1| hypothetical protein PaerPAb_20771 [Pseudomonas aeruginosa PAb1]
Length = 158
Score = 34.8 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 23/159 (14%)
Query: 16 QQELRWRQQEERPR----IIKAISEARAYGDLSENA---EYQAAKELQNLNE----GRMA 64
+++L E+ ++A A EN +Y R+
Sbjct: 3 KKQLLRLITEKLAADLEVAVRAAQTAHETATHEENVAENKYDTLGLEAAYLAAGQSRRVE 62
Query: 65 ELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----- 118
E+ + ++ I A V+L+ + G ++ + G + A ++
Sbjct: 63 EIRQALGLYRNLVLRDFDEEQGIQLTALVTLLNAD-GSRRTVFL-GPEAAGLKIDCEGRE 120
Query: 119 --LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+++ SP+ ++LIG+ GD A EIL V
Sbjct: 121 VLVITPRSPLGQSLIGRHPGDET--GAKDSLLAVEILAV 157
>gi|289620284|emb|CBI53142.1| unnamed protein product [Sordaria macrospora]
Length = 528
Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 13/118 (11%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G +K ++ ++E P+++ R + E EY GR E
Sbjct: 174 TKEGLEKAVAKIEEMMKQELPQLVDERRFRRRDQEQVERDEY-----------GRRKWPE 222
Query: 68 NIIT-RAEVIDISTMSGDRIAFGA-TVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
I E + + + G V +++ +G + + G + +G S
Sbjct: 223 ERIPINLEPVPGFNLRAQVVGHGGAYVKHIQQETGCRVQIKGRGSGYIEASTGRESED 280
>gi|149204748|ref|ZP_01881712.1| hypothetical protein RTM1035_01090 [Roseovarius sp. TM1035]
gi|149141857|gb|EDM29909.1| hypothetical protein RTM1035_01090 [Roseovarius sp. TM1035]
Length = 1277
Score = 34.8 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 19/145 (13%)
Query: 5 IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSE--------NAEYQAAKELQ 56
I +T + + + ELRW E R+ + + + E + + +
Sbjct: 403 IAITKEAEIERRAELRWLLSFEMTRMNLDLQVSSLESQIGEYDRQLARNRTQLETLVRQR 462
Query: 57 NLNEGRMAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
+ E R+ + ++ I A + ID ++ + + E G + ++G+
Sbjct: 463 AILETRIVDAQSSIEGAKQRIDRIDVTQVDVHALRRNVIREDICGVENQLALIGETL--- 519
Query: 116 QSGLVSISSPIARALIGKELGDIIS 140
+P A AL G+E D++S
Sbjct: 520 -------DTPFAPALPGEEPCDVVS 537
>gi|149177491|ref|ZP_01856094.1| sensory box histidine kinase/response regulator [Planctomyces maris
DSM 8797]
gi|148843641|gb|EDL58001.1| sensory box histidine kinase/response regulator [Planctomyces maris
DSM 8797]
Length = 1362
Score = 34.8 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 57/144 (39%), Gaps = 18/144 (12%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
D++ + F+ + +EL ++E RI + +E +A Q Q+
Sbjct: 371 SDEVGMLGAAFNHMAEELSASREELEDRIEQRTAELKAS---------QKQLRRQSQILQ 421
Query: 62 RMAELENIITRAEVIDISTMSGDRIAFGATVS----LVEKNSGDKKNYQIVGDQEADVQS 117
+ + + ++ + G+ + + + +N K QI G AD ++
Sbjct: 422 SILDS---MGDGVIV--ADQDGNSVFWNPAAEQIVGIGPQNVDPDKWSQIYGCYLADGKT 476
Query: 118 GLVSISSPIARALIGKELGDIISV 141
S P+ARA+ G+ L +++
Sbjct: 477 MCPSRDLPLARAMRGESLDEVVLY 500
>gi|254245301|ref|ZP_04938623.1| hypothetical protein PA2G_06193 [Pseudomonas aeruginosa 2192]
gi|126198679|gb|EAZ62742.1| hypothetical protein PA2G_06193 [Pseudomonas aeruginosa 2192]
Length = 158
Score = 34.8 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 28/159 (17%), Positives = 56/159 (35%), Gaps = 23/159 (14%)
Query: 16 QQELRWRQQEERPR----IIKAISEARAYGDLSENA---EYQAAKELQNLNE----GRMA 64
+++L E+ ++A A EN +Y R+
Sbjct: 3 KKQLLRLITEKLAADLEIAVRAAQTAHETATHEENVAENKYDTLGLEAAYLAAGQSRRVE 62
Query: 65 ELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----- 118
E+ + ++ I A V+L+ + G ++ + G + A ++
Sbjct: 63 EIRQALGLYRNLVLRDFDEEQGIQLTALVTLLNAD-GSRRTVFL-GPEAAGLKIDCEGRE 120
Query: 119 --LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+++ SP+ ++LIG+ GD A EIL V
Sbjct: 121 VLVITPRSPLGQSLIGRHPGDET--GAKDSLLAVEILAV 157
>gi|134115238|ref|XP_773917.1| hypothetical protein CNBH3690 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256545|gb|EAL19270.1| hypothetical protein CNBH3690 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1053
Score = 34.8 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 4 KIPVTS---KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
K +T + D+++Q L R++ ER R A + + +E + A+ E
Sbjct: 336 KTWMTKLKERDLDRMEQRLTRRKEVERIRKALAHWKRKWDDRRTERWKKDMAERELGFIE 395
Query: 61 GRM 63
R
Sbjct: 396 RRR 398
>gi|71280898|ref|YP_267673.1| hypothetical protein CPS_0924 [Colwellia psychrerythraea 34H]
gi|71146638|gb|AAZ27111.1| conserved hypothetical protein [Colwellia psychrerythraea 34H]
Length = 161
Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 99 SGDKKNYQIVGDQEADVQSGL-------VSISSPIARALIGKELGDIISVNAPGGEKTYE 151
D ++ +G + L ++ SP+ ALIGK+L D I V +
Sbjct: 97 DSDTNHWFFIGPAAGGFRCQLAQQNITVITPQSPMGIALIGKQLDDDIEVMLGSNKLEDY 156
Query: 152 IL 153
I+
Sbjct: 157 IV 158
>gi|58261190|ref|XP_568005.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134115795|ref|XP_773611.1| hypothetical protein CNBI2250 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|74682377|sp|Q5K8T2|SWR1_CRYNE RecName: Full=Helicase SWR1
gi|50256237|gb|EAL18964.1| hypothetical protein CNBI2250 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230087|gb|AAW46488.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1246
Score = 34.8 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 24 QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELEN----IITRAEVIDI- 78
+ RPR + ARA ++ + + QAA+ Q E + E E + R V +
Sbjct: 1140 EVTRPRAGEERELARALAEVEDEEDAQAARMAQGEGELDLQEFEEGPKAVAKRVRVFEPE 1199
Query: 79 ---STMSGDRIAFGATVSLVEKNSGDKKNYQI 107
+ ++ + G V + G + Y +
Sbjct: 1200 NSGTPVTTEAGETGDVVEEYDDEPGSVEEYML 1231
>gi|2558956|gb|AAC49849.1| Masc1 [Ascobolus immersus]
Length = 537
Score = 34.8 bits (79), Expect = 4.4, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 26 ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE--NIITRAEVIDISTMSG 83
++ R I+ I+EA A E + EG + + +++DI + S
Sbjct: 119 KKQRYIRRITEAEA---DPEYRVEDRVLRRRWFQEGYIGDEISYKEHGNGDIVDIRSESP 175
Query: 84 DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
++ G LV+ +G++ + I G + G + + P+A+A
Sbjct: 176 LQVLDGWGGDLVDLENGEETS--IPGPCRSASSYGRL-MKPPLAQA 218
>gi|268324326|emb|CBH37914.1| hypothetical secreted protein [uncultured archaeon]
Length = 821
Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 17/114 (14%), Positives = 42/114 (36%), Gaps = 6/114 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
++I E+ + + E + +EY+ + ++ NEG E +
Sbjct: 243 NRIDAEVYMLMPAKLGELDDEELEIKFDEPRGTKSEYEESIYVRVRNEG----DEKMEFS 298
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD--VQSGLVSISS 124
+++I+ + I+ + + V+ + + QI A G + I +
Sbjct: 299 SKIIEPREIDMKVISVYSGLVEVDGKADEDVKIQITVPYYASEGTHHGKLQIEA 352
>gi|145603312|ref|XP_369334.2| hypothetical protein MGG_06130 [Magnaporthe oryzae 70-15]
gi|145011570|gb|EDJ96226.1| hypothetical protein MGG_06130 [Magnaporthe oryzae 70-15]
Length = 702
Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
K +QEL + ++ ++ + + E + D +E + + L E + +
Sbjct: 279 KKEQELEYYKKVQKMLVDQTKKETKRILDDAEVKDEAHLERLIKELEKTIKKARTKDLGG 338
Query: 74 EVIDISTMSGDRIAFGATVSLVEKNSGD 101
EV D + D + + + ++ D
Sbjct: 339 EVEDEAAEEPDF----SLLEVPDEELDD 362
>gi|58271724|ref|XP_573018.1| spindle pole body duplication -related protein [Cryptococcus
neoformans var. neoformans JEC21]
gi|57229277|gb|AAW45711.1| spindle pole body duplication -related protein, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1018
Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 4 KIPVTS---KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
K +T + D+++Q L R++ ER R A + + +E + A+ E
Sbjct: 338 KTWMTKLKERDLDRMEQRLTRRKEVERIRKALAHWKRKWDDRRTERWKKDMAERELGFIE 397
Query: 61 GRM 63
R
Sbjct: 398 RRR 400
>gi|85082234|ref|XP_956871.1| hypothetical protein NCU01665 [Neurospora crassa OR74A]
gi|16944432|emb|CAD11430.1| conserved hypothetical protein [Neurospora crassa]
gi|28917951|gb|EAA27635.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 523
Score = 34.4 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G +K ++ ++E P+++ R + E EY GR E
Sbjct: 182 TKEGLEKAVAKIEEMMKQELPQLVDERRFRRRDQEQVERDEY-----------GRRKWPE 230
Query: 68 NIIT-RAEVIDISTMSGDRIAFGA-TVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
I E + + + G V +++ +G + + G + +G S
Sbjct: 231 ERIPINLEPVPGFNLRAQVVGHGGAYVKHIQQETGCRVQIKGRGSGYIEASTGRES 286
>gi|11288453|pir||T49351 hypothetical protein B1D1.50 [imported] - Neurospora crassa
Length = 487
Score = 34.4 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 8 TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
T +G +K ++ ++E P+++ R + E EY GR E
Sbjct: 226 TKEGLEKAVAKIEEMMKQELPQLVDERRFRRRDQEQVERDEY-----------GRRKWPE 274
Query: 68 NIIT-RAEVIDISTMSGDRIAFGA-TVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
I E + + + G V +++ +G + + G + +G S
Sbjct: 275 ERIPINLEPVPGFNLRAQVVGHGGAYVKHIQQETGCRVQIKGRGSGYIEASTGRES 330
>gi|226469080|emb|CAX70019.1| Myosin binding subunit [Schistosoma japonicum]
Length = 296
Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSE--NAEYQAAKELQNLNEGRMAELENI 69
+ ++ +E + R + A E + + E +++ Q E R++E E
Sbjct: 205 YKQLYEEEKVLTTGLREEVKAAQKELKELENSLEYNTGRRRSSDAEQRKMERRISECEQE 264
Query: 70 ITRAE 74
+ E
Sbjct: 265 LKLLE 269
>gi|119476124|ref|ZP_01616476.1| hypothetical protein GP2143_06025 [marine gamma proteobacterium
HTCC2143]
gi|119450751|gb|EAW31985.1| hypothetical protein GP2143_06025 [marine gamma proteobacterium
HTCC2143]
Length = 158
Score = 34.4 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 13/151 (8%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE----GRMAELENIITR 72
++L++ +A A ++++N Y R+A+L+ I+
Sbjct: 10 EQLQFDLSTAARAGQQAHDSATHSENIADNK-YDTLAVEAAYLAHGQSMRIAQLQQFISL 68
Query: 73 AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-------GLVSISSP 125
+ + + VE + I G + +++ ++P
Sbjct: 69 YQHYQRPIFNNQSAIQVGALVCVENEQKQQSRLFI-GPAAGGLSISSQWGLVQVITPTTP 127
Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
+AR LI K + D + + + I+ +
Sbjct: 128 LARLLISKYVDDEVDSEINQRKVCFRIVSIE 158
>gi|284038115|ref|YP_003388045.1| hypothetical protein Slin_3235 [Spirosoma linguale DSM 74]
gi|283817408|gb|ADB39246.1| hypothetical protein Slin_3235 [Spirosoma linguale DSM 74]
Length = 154
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 18/120 (15%)
Query: 41 GDLSENAEYQAAKEL--QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKN 98
GD E A E ++E + + + S + + G+
Sbjct: 47 GDKYETGRAMAQLERDRHAQLLAEAVKIERELKQLAI----EKSYETVQPGSVAV----- 97
Query: 99 SGDKKNYQIVGDQEA---DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+ + +G + V VS +SPI L G +GD ++ N + Y+I +V
Sbjct: 98 TSRGLFFISIGAGKMTLDGVDYFAVSAASPIGSLLAGHRVGDAVTFN----KMVYQIQEV 153
>gi|163845661|ref|YP_001633705.1| hypothetical protein Caur_0062 [Chloroflexus aurantiacus J-10-fl]
gi|222523366|ref|YP_002567836.1| hypothetical protein Chy400_0067 [Chloroflexus sp. Y-400-fl]
gi|163666950|gb|ABY33316.1| protein of unknown function DUF214 [Chloroflexus aurantiacus
J-10-fl]
gi|222447245|gb|ACM51511.1| protein of unknown function DUF214 [Chloroflexus sp. Y-400-fl]
Length = 849
Score = 34.4 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 15/88 (17%)
Query: 76 IDISTMSGDRIAFGATVS-----LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA-RA 129
ID+ T +A G+T L + GD+ + ++G V IS P+A R+
Sbjct: 564 IDLPTGPTTLVAVGSTTDRGRRALRFQQGGDEATWTA-------WENGAVLISEPLAFRS 616
Query: 130 LIGKELGDIISVNAPGGEKTYEILQVLW 157
+G +GD ++V G + I V +
Sbjct: 617 GLG--VGDTLTVRTDRGLRELPIAGVYY 642
>gi|118588951|ref|ZP_01546358.1| hypothetical protein SIAM614_12903 [Stappia aggregata IAM 12614]
gi|118438280|gb|EAV44914.1| hypothetical protein SIAM614_12903 [Stappia aggregata IAM 12614]
Length = 1295
Score = 34.4 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 10/119 (8%)
Query: 40 YGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGAT----VSLV 95
+G + Y QN N+GR+ + +I + G T ++
Sbjct: 742 FGRAEDGLGYGYEVAQQNRNDGRV-----CLLYVGLILPDPANLRMPDIGETISVDCTVE 796
Query: 96 EKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEIL 153
+ S + + + + + P A++LIG + GDI+ GG ++++++
Sbjct: 797 IERSDKIRRKVTIEAGPNRPGTERFNPAHPFAKSLIGAKDGDIVVYEGGGGTPQSWKVI 855
>gi|154246196|ref|YP_001417154.1| transposase IS66 [Xanthobacter autotrophicus Py2]
gi|154160281|gb|ABS67497.1| transposase IS66 [Xanthobacter autotrophicus Py2]
Length = 538
Score = 34.4 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 15/117 (12%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAIS------EARAYGDLSENAEYQAAKE 54
M+ + +T + K+++EL ++ E R+I + EARA D E
Sbjct: 41 MIAHLKLTIE---KLRRELYGQRSERTVRLIDQMELQLEELEARASEDEIAAQESARLAS 97
Query: 55 LQNLNEGRMAELE---NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV 108
L R + + R V+ + S ++ L + + +IV
Sbjct: 98 LPAPAPRRRPVRKPFPEHLPRERVVVPAPTSCPCC---GSMKLSKLGEDVTETLEIV 151
>gi|294054197|ref|YP_003547855.1| hypothetical protein Caka_0660 [Coraliomargarita akajimensis DSM
45221]
gi|293613530|gb|ADE53685.1| conserved hypothetical protein [Coraliomargarita akajimensis DSM
45221]
Length = 156
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 26/150 (17%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSEN---AEYQAAKELQNLNE-GRMAELEN 68
D ++QEL+ + A +A AY E +++ + G+ +
Sbjct: 12 DTLEQELKH--------AVDASKDAAAYATNEEAKAESQWDTQGLEASYLAAGQADQARQ 63
Query: 69 IITRAEVIDISTMS----GDRIAFGATVSLVEKNSGDKKNYQIVGD------QEADVQSG 118
+ + + ++ GA L G+ + Y G + D
Sbjct: 64 WADAIKELRAEKHDLLVRKNSVSLGAL--LQCDFGGESEYYFFAGVAGGHSVEVEDKSVT 121
Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK 148
+++ SP+A L+G + G+ S P G
Sbjct: 122 VITPQSPLAGRLLGLKEGE--SFRLPNGTY 149
>gi|226939348|ref|YP_002794421.1| hypothetical protein LHK_00417 [Laribacter hongkongensis HLHK9]
gi|226941500|ref|YP_002796574.1| hypothetical protein LHK_02584 [Laribacter hongkongensis HLHK9]
gi|226714274|gb|ACO73412.1| hypothetical protein LHK_00417 [Laribacter hongkongensis HLHK9]
gi|226716427|gb|ACO75565.1| hypothetical protein LHK_02584 [Laribacter hongkongensis HLHK9]
Length = 342
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 35 SEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94
AR S + A +Q E R+ + ++R VI + M+G++I G T ++
Sbjct: 15 QLARLNSVPSAEKSFTVAPSIQQTLESRIQQSSEFLSRINVIGVPEMAGEKIGLGVTGTI 74
Query: 95 V 95
Sbjct: 75 A 75
>gi|86131965|ref|ZP_01050561.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
gi|85817299|gb|EAQ38479.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
Length = 152
Score = 34.4 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 30/149 (20%), Positives = 51/149 (34%), Gaps = 33/149 (22%)
Query: 15 IQQEL-----RWRQQEERPRIIKAISEARAYGDLSEN----AEYQAAKELQNLNEGR--- 62
I++EL Q R +++ I + A E + E
Sbjct: 6 IKEELLKACKEHLMQ--RRDVVQQILDNVATSLREETKSTAGDKHETGRAMLQLERENAG 63
Query: 63 -----MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEAD 114
+ +LE I R ++ +S + G+ V + Y I VG + D
Sbjct: 64 KQLAAIEKLEQIFLRIKL----DLSEGPVHLGSVVVT------SQACYFISIPVGAIKVD 113
Query: 115 VQSGL-VSISSPIARALIGKELGDIISVN 142
+ + I SPI + L+GK GD +
Sbjct: 114 GLTFYAIGIGSPIGQLLMGKREGDEVRFR 142
>gi|326781120|ref|ZP_08240385.1| ABC transporter related protein [Streptomyces cf. griseus
XylebKG-1]
gi|326661453|gb|EGE46299.1| ABC transporter related protein [Streptomyces cf. griseus
XylebKG-1]
Length = 600
Score = 34.4 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 50 QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
AA E R+ E E ++ + D + A+G ++ E G
Sbjct: 94 DAALAELRDLERRIREAEAGLSERKPGDPGPSDAELAAYGDLLTAYEDRDG 144
>gi|32566139|ref|NP_506065.2| MYOsin heavy chain structural genes family member (myo-3)
[Caenorhabditis elegans]
gi|127737|sp|P12844|MYO3_CAEEL RecName: Full=Myosin-3; AltName: Full=Myosin heavy chain A; Short=MHC
A
gi|6799|emb|CAA30856.1| myosin heavy chain 3 [Caenorhabditis elegans]
gi|33300386|emb|CAB01576.2| C. elegans protein K12F2.1, partially confirmed by transcript
evidence [Caenorhabditis elegans]
Length = 1969
Score = 34.4 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 13 DKIQQELRWRQQEERPR--IIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
++++QE ER R + I E + D +ENA + K++ E R+ +E +
Sbjct: 1780 EELRQEQEHSMHIERIRKGLELQIKEMQIRLDDAENAALKGGKKIIAQLEARIRAIEQEL 1839
Query: 71 TRAE 74
+
Sbjct: 1840 DGEQ 1843
>gi|111018727|ref|YP_701699.1| sulfonate ABC transporter substrate-binding component [Rhodococcus
jostii RHA1]
gi|110818257|gb|ABG93541.1| possible ABC sulfonate transporter, substrate binding component
[Rhodococcus jostii RHA1]
Length = 349
Score = 34.4 bits (78), Expect = 5.7, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 10/81 (12%)
Query: 80 TMSGDRIAFGATVSLVEKN---SGDKKNYQIVGDQEADVQSGLVSIS-SPI--ARALIGK 133
GA LV+ +G Y GD EAD +G + SPI AR LIGK
Sbjct: 94 DTDFGSAFNGAIAKLVDAGAPLTGVVSVYGSDGDTEADSFNGYYVLEGSPIRTARELIGK 153
Query: 134 ELGDIISVNAPGGEKTYEILQ 154
++G +N G Y I +
Sbjct: 154 KVG----INTLGAYHEYVIKE 170
>gi|226469078|emb|CAX70018.1| Myosin binding subunit [Schistosoma japonicum]
gi|226485266|emb|CAX74344.1| Myosin binding subunit [Schistosoma japonicum]
Length = 296
Score = 34.4 bits (78), Expect = 5.9, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSE--NAEYQAAKELQNLNEGRMAELENI 69
+ ++ +E + R + A E + + E +++ Q E R++E E
Sbjct: 205 YKQLYEEEKVLTTGLREEVKAAQKELKELENSLEYSTGRRRSSDAEQRKMERRISECEQE 264
Query: 70 ITRAE 74
+ E
Sbjct: 265 LKLLE 269
>gi|194756198|ref|XP_001960366.1| GF13327 [Drosophila ananassae]
gi|190621664|gb|EDV37188.1| GF13327 [Drosophila ananassae]
Length = 564
Score = 34.0 bits (77), Expect = 6.0, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 10 KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
+G D I+ EL R I ++ A N + + E NLNE ++ E
Sbjct: 90 EG-DAIKTELAESVAASVKRRRGRIRKSEALISKDANDDLKCVLEQINLNEIKIEFPEAD 148
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK 102
+T A+V+D + + E ++
Sbjct: 149 LTIADVLDDQDQHDFMPSDSCGSQIEEGIDDEE 181
>gi|220921770|ref|YP_002497071.1| hypothetical protein Mnod_1778 [Methylobacterium nodulans ORS 2060]
gi|219946376|gb|ACL56768.1| protein of unknown function DUF214 [Methylobacterium nodulans ORS
2060]
Length = 863
Score = 34.0 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 35 SEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94
+A ++ L A + E + GR+ L +E+ + + G
Sbjct: 543 RDAASFDQLLGAAAPRGKIERVPMMRGRITALNGR-PASEI--KAPEDAAWVLDGDRGIT 599
Query: 95 VEKNSGDKKNYQIVGDQEAD-VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
++ D D ++ LVS + RAL G ++GD ++VN G T I
Sbjct: 600 YAEDLPDGSRVTAGAWWTPDQAKTPLVSFDDQLGRAL-GLKVGDTVTVNVLGRNLTVPIA 658
Query: 154 QVLWI 158
+ +
Sbjct: 659 NLRHV 663
>gi|26390333|dbj|BAC25880.1| unnamed protein product [Mus musculus]
gi|74181932|dbj|BAE32665.1| unnamed protein product [Mus musculus]
Length = 329
Score = 34.0 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67
++++++L + + I+ E + + Y+ A+++Q E R++++E
Sbjct: 182 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 239
>gi|156341276|ref|XP_001620711.1| hypothetical protein NEMVEDRAFT_v1g147315 [Nematostella vectensis]
gi|156205955|gb|EDO28611.1| predicted protein [Nematostella vectensis]
Length = 122
Score = 34.0 bits (77), Expect = 6.4, Method: Composition-based stats.
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 70 ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
+ E+I S S + + + SG+K Y G++ SG + + SP
Sbjct: 45 LPSGEIIVYSPSSEKIVYSPSGEKIFYSPSGEKIFYSPSGEKIVYSPSGKIIVYSPSGEK 104
Query: 130 LIGKELGDIISVNAPGGEK 148
+I G+II +P G+K
Sbjct: 105 IIYSPSGEIIVY-SPSGKK 122
>gi|149049677|gb|EDM02131.1| hypothetical LOC312654 (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 329
Score = 34.0 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67
++++++L + + I+ E + + Y+ A+++Q E R++++E
Sbjct: 182 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 239
>gi|268557418|ref|XP_002636698.1| C. briggsae CBR-MYO-3 protein [Caenorhabditis briggsae]
gi|74788753|sp|Q60LV4|MYO3_CAEBR RecName: Full=Myosin-3; AltName: Full=Myosin heavy chain A; Short=MHC
A
gi|187021029|emb|CAP39610.1| CBR-MYO-3 protein [Caenorhabditis briggsae AF16]
Length = 1969
Score = 34.0 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 13 DKIQQELRWRQQEERPR--IIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
++++QE ER R + I E + D +ENA + K++ E R+ +E +
Sbjct: 1780 EELRQEQEHSMHIERIRKGLELQIKEMQIRLDDAENAALKGGKKIIAQLEARIRAIEQEL 1839
Query: 71 TRAE 74
+
Sbjct: 1840 DGEQ 1843
>gi|119610154|gb|EAW89748.1| hCG1773689, isoform CRA_c [Homo sapiens]
Length = 428
Score = 34.0 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 7/139 (5%)
Query: 9 SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELEN 68
++++E+ + P I A A E A + E + L++
Sbjct: 40 RNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKH 99
Query: 69 IITRAE-----VIDISTMSGDRIAF-GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E V+D MS + + E G + Q G +A G V
Sbjct: 100 KFKTLEKHLEDVLDPLKMSSPHAESQPSVRTSTETTGGSAQAGQAGGSVQAGQAGGSVQA 159
Query: 123 SSPIARALIGKELGDIISV 141
P++ L ++LGD + +
Sbjct: 160 G-PVSSGLALRKLGDRVQL 177
>gi|27376112|ref|NP_767641.1| ABC transporter permease [Bradyrhizobium japonicum USDA 110]
gi|27349251|dbj|BAC46266.1| bll1001 [Bradyrhizobium japonicum USDA 110]
Length = 820
Score = 34.0 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 131 IGKELGDIISVNAPGGEKTYEILQV 155
+ +GD++ V APGG +I+ +
Sbjct: 585 LNVRVGDVVEVPAPGGTWELDIVGI 609
>gi|167737063|ref|ZP_02409837.1| hypothetical protein Bpse14_03306 [Burkholderia pseudomallei 14]
Length = 814
Score = 34.0 bits (77), Expect = 6.8, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 86 IAFGATVSLVEKNSGDKKNYQIVGDQEADV--QSGLVSISSPIARALIGKELGDIISVNA 143
++ G +L+ + G I + S A IGK +G+ +++
Sbjct: 592 VSAGVAATLL-REDGSPFTLVIDPTDVGTLPQAQNYFPHDSAFAANFIGKRVGETVTIRH 650
Query: 144 PGGEKT 149
GE+T
Sbjct: 651 QMGEET 656
>gi|308493565|ref|XP_003108972.1| CRE-SMC-5 protein [Caenorhabditis remanei]
gi|308247529|gb|EFO91481.1| CRE-SMC-5 protein [Caenorhabditis remanei]
Length = 1092
Score = 34.0 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 1 MVDKIPVTSKGFDKIQQELRWRQQEERPRI---IKAISEARA--YGDLSENAEYQAAKEL 55
M++K + + ++I E ++ R I + + EA G EY+ A+
Sbjct: 318 MMEKAKMKLENAERIADEHNQEVEKTRKNIETVTEKLEEANEALVGYDDALVEYRRAEAK 377
Query: 56 QNLNEGRMAELENII 70
+ E E+ I
Sbjct: 378 LSQLERENRREEDAI 392
>gi|255082376|ref|XP_002504174.1| predicted protein [Micromonas sp. RCC299]
gi|226519442|gb|ACO65432.1| predicted protein [Micromonas sp. RCC299]
Length = 940
Score = 34.0 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 9 SKGFDKIQQELRW--RQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
+ D+++ EL R ++ER R+IK +AR ++ + Y + E + +
Sbjct: 248 QEKRDRLRAELDEQVRLKKERERLIKEADDAREKAEVGRVSHYDRWGKRGGGGEPLVDDR 307
Query: 67 ENIITRAEVID 77
++I + +D
Sbjct: 308 GHLIAELKGVD 318
>gi|308504173|ref|XP_003114270.1| CRE-MYO-3 protein [Caenorhabditis remanei]
gi|308261655|gb|EFP05608.1| CRE-MYO-3 protein [Caenorhabditis remanei]
Length = 1969
Score = 34.0 bits (77), Expect = 7.1, Method: Composition-based stats.
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 13 DKIQQELRWRQQEERPR--IIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
++++QE ER R + I E + D +ENA + K++ E R+ +E +
Sbjct: 1780 EELRQEQEHSMHIERIRKGLELQIKEMQIRLDDAENAALKGGKKIIAQLEARIRAIEQEL 1839
Query: 71 TRAE 74
+
Sbjct: 1840 DGEQ 1843
>gi|121583964|ref|NP_001073477.1| transmembrane and coiled-coil domains protein 1 [Danio rerio]
gi|115529137|gb|AAI24782.1| Zgc:153972 [Danio rerio]
Length = 656
Score = 34.0 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67
++++++L + + I+ E + + Y+ A+++Q E R++++E
Sbjct: 509 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 566
>gi|332231785|ref|XP_003265075.1| PREDICTED: transmembrane and coiled-coil domains protein 1 isoform
2 [Nomascus leucogenys]
gi|332817885|ref|XP_003310053.1| PREDICTED: transmembrane and coiled-coil domains protein 1 isoform
1 [Pan troglodytes]
gi|34364785|emb|CAE45831.1| hypothetical protein [Homo sapiens]
gi|193784913|dbj|BAG54066.1| unnamed protein product [Homo sapiens]
Length = 329
Score = 34.0 bits (77), Expect = 7.2, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67
++++++L + + I+ E + + Y+ A+++Q E R++++E
Sbjct: 182 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 239
>gi|3882279|dbj|BAA34499.1| KIAA0779 protein [Homo sapiens]
Length = 320
Score = 34.0 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67
++++++L + + I+ E + + Y+ A+++Q E R++++E
Sbjct: 173 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 230
>gi|47223196|emb|CAG11331.1| unnamed protein product [Tetraodon nigroviridis]
Length = 462
Score = 34.0 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67
++++++L + + I+ E + + Y+ A+++Q E R++++E
Sbjct: 315 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 372
>gi|119599639|gb|EAW79233.1| transmembrane and coiled-coil domain family 1, isoform CRA_c [Homo
sapiens]
Length = 480
Score = 34.0 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67
++++++L + + I+ E + + Y+ A+++Q E R++++E
Sbjct: 333 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 390
>gi|148236460|ref|NP_001084767.1| transmembrane and coiled-coil domain family 1 [Xenopus laevis]
gi|47125221|gb|AAH70774.1| MGC83809 protein [Xenopus laevis]
Length = 509
Score = 34.0 bits (77), Expect = 7.4, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67
++++++L + + I+ E + + Y+ A+++Q E R++++E
Sbjct: 362 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 419
>gi|46579866|ref|YP_010674.1| hypothetical protein DVU1455 [Desulfovibrio vulgaris str.
Hildenborough]
gi|120602668|ref|YP_967068.1| hypothetical protein Dvul_1624 [Desulfovibrio vulgaris DP4]
gi|46449282|gb|AAS95933.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120562897|gb|ABM28641.1| protein of unknown function DUF164 [Desulfovibrio vulgaris DP4]
gi|311234133|gb|ADP86987.1| protein of unknown function DUF164 [Desulfovibrio vulgaris RCH1]
Length = 247
Score = 33.7 bits (76), Expect = 7.8, Method: Composition-based stats.
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 4/69 (5%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
+ +++EL E+R + ++EA+ D E+ A E+ R + +
Sbjct: 135 YTALKEELD----EKRANLEARLAEAQQVLDALEHKRNAAGSEVPGPVLSRYEFIRKRLD 190
Query: 72 RAEVIDIST 80
++ +
Sbjct: 191 HPVIVSVEN 199
>gi|297794167|ref|XP_002864968.1| hypothetical protein ARALYDRAFT_919901 [Arabidopsis lyrata subsp.
lyrata]
gi|297310803|gb|EFH41227.1| hypothetical protein ARALYDRAFT_919901 [Arabidopsis lyrata subsp.
lyrata]
Length = 185
Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query: 17 QELRWRQQEERPRIIK----------AISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
++L + EER +++K I R + + E A + ++ ++ E ++E+
Sbjct: 79 EDLDVLEMEEREKVVKHMWDVYNNGRRIRLPRFWQEAFEAAYEELTSDVPDVVEAAISEI 138
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101
+ R+ VID + + T +L ++G
Sbjct: 139 ARMSIRSVVIDPPPLHSTNVREL-TKTLKLADNGR 172
>gi|72395249|gb|AAZ69522.1| seryl-tRNA synthetase [Methanosarcina barkeri str. Fusaro]
Length = 450
Score = 33.7 bits (76), Expect = 8.4, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 12/114 (10%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
EL+ ++ I K EN + + E R+ E+++II +
Sbjct: 73 DELKHKRNVVTREIAKL---------KKENKDTLSKIEEMQGINSRIKEIDDIIRDYK-S 122
Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
I + ++ + V K+ D +IVG+ + I AL
Sbjct: 123 KIHEIMLRIPNIPSSTTPVGKDENDNPVVRIVGEPRKFTFTPKPHWE--IGEAL 174
>gi|116048954|ref|YP_792244.1| hypothetical protein PA14_51060 [Pseudomonas aeruginosa UCBPP-PA14]
gi|115584175|gb|ABJ10190.1| hypothetical protein PA14_51060 [Pseudomonas aeruginosa UCBPP-PA14]
Length = 158
Score = 33.7 bits (76), Expect = 8.5, Method: Composition-based stats.
Identities = 27/166 (16%), Positives = 58/166 (34%), Gaps = 21/166 (12%)
Query: 2 VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE- 60
+DK + +K+ +L R + E + + +Y
Sbjct: 1 MDKKKLLRLITEKLAADLE-----VAVRAAQTAHETATHEENVAENKYDTLGLEAAYLAA 55
Query: 61 ---GRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
R+ E+ + ++ I A V+L+ + G ++ + G + A ++
Sbjct: 56 GQSRRVEEIRQALGLYRNLVLRDFDEEQGIQLTALVTLLNAD-GSRRTVFL-GPEAAGLK 113
Query: 117 SG-------LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
+++ SP+ ++L+G+ GD A EIL V
Sbjct: 114 IDCEGREVLVITPRSPLGQSLVGRHPGDET--GAKDSPLAVEILAV 157
>gi|163786843|ref|ZP_02181291.1| hypothetical protein FBALC1_16697 [Flavobacteriales bacterium
ALC-1]
gi|159878703|gb|EDP72759.1| hypothetical protein FBALC1_16697 [Flavobacteriales bacterium
ALC-1]
Length = 149
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 57/154 (37%), Gaps = 21/154 (13%)
Query: 12 FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG-----RMAEL 66
++K Q L R + + I I +A S + E ++AE+
Sbjct: 8 YNKCQDFLNNRLEVIQKTISD-IQKALQSETKSSAGDKHETGRAMLQLEREKAGNQLAEI 66
Query: 67 ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEADVQSGL-VSI 122
+ + ID++ + + NY I VG+ + + + +S
Sbjct: 67 QKQQEIFQKIDLNATPQKAALGSLVYT-------SQLNYYIALSVGEIDIENRKFYAISA 119
Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
S+PIA+ L+ K +G+ I T+ I ++
Sbjct: 120 STPIAQLLLSKTVGEEIQFR----SSTFVITKIE 149
>gi|291334098|gb|ADD93770.1| hypothetical protein [uncultured marine bacterium
MedDCM-OCT-S05-C222]
Length = 1253
Score = 33.7 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
SP+A AL+ E GD +++ AP E + V +I
Sbjct: 20 SPLAAALVDVEKGDDVTIIAPIEESKLPLDDVQFI 54
>gi|282600669|ref|ZP_05979374.2| SNF2 family protein [Subdoligranulum variabile DSM 15176]
gi|282571763|gb|EFB77298.1| SNF2 family protein [Subdoligranulum variabile DSM 15176]
Length = 2992
Score = 33.7 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 9/127 (7%)
Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
+ + RI + I E R Y ++ Q + + R A E I +V+D +
Sbjct: 902 WPKVQRRIAQLIKEDRFYTEVE-----QDRFDNIDPIAIREALAERGIVNGQVVDPEKLD 956
Query: 83 GDRIAFGATVSLVEKNSGDK-KNYQIVGDQ---EADVQSGLVSISSPIARALIGKELGDI 138
D ++ GD+ + Y G + D + SP+ R ++ D
Sbjct: 957 NDPFIQQVMANVERAAGGDEPEAYTSPGGRTYHPGDAIDAFIDDKSPVVRMVLDHVDEDY 1016
Query: 139 ISVNAPG 145
I P
Sbjct: 1017 IWYTMPS 1023
>gi|325679085|ref|ZP_08158679.1| ABC transporter, solute-binding protein [Ruminococcus albus 8]
gi|324109209|gb|EGC03431.1| ABC transporter, solute-binding protein [Ruminococcus albus 8]
Length = 420
Score = 33.7 bits (76), Expect = 9.0, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 30 IIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFG 89
+ +A EA + E EY+A +NE R+ + ++ +E+IDI + + + +
Sbjct: 342 VSRAAEEALEAHGMLEGVEYEAN--RMMMNEPRLMTMSPLMENSELIDIYADALNGVYYN 399
Query: 90 ATVSL 94
+++
Sbjct: 400 KHITV 404
>gi|320100818|ref|YP_004176410.1| hypothetical protein Desmu_0620 [Desulfurococcus mucosus DSM 2162]
gi|319753170|gb|ADV64928.1| protein of unknown function DUF214 [Desulfurococcus mucosus DSM
2162]
Length = 405
Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 25/81 (30%)
Query: 100 GDKKNYQIVGDQEADVQSGLVSIS---------SPIARALIGKEL------------GDI 138
G++K I G + L S++ S I +AL+G + GD+
Sbjct: 102 GERKTVFIYGVDAEFILKALTSLTVMEGNPPSRSDIGKALVGYRIAFNDNGEREYDLGDV 161
Query: 139 ISVNA----PGGEKTYEILQV 155
+++ PGG+ + L V
Sbjct: 162 VAITVYQVQPGGKIQVKRLSV 182
>gi|229824570|ref|ZP_04450639.1| hypothetical protein GCWU000282_01914 [Catonella morbi ATCC 51271]
gi|229785941|gb|EEP22055.1| hypothetical protein GCWU000282_01914 [Catonella morbi ATCC 51271]
Length = 1228
Score = 33.7 bits (76), Expect = 9.4, Method: Composition-based stats.
Identities = 26/151 (17%), Positives = 46/151 (30%), Gaps = 26/151 (17%)
Query: 23 QQEERPRIIKAIS-EARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEV----ID 77
+ R+ I A DL A+ + + EV +D
Sbjct: 566 KSVTPHRVTTEIDYLAADEEDLYVVAQANSKLNEDGTFANDLVMARFRSQNIEVNVDQVD 625
Query: 78 ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI----------- 126
+S ++ AT S+ + D ++G L++ SP+
Sbjct: 626 YMDVSPKQVVAVATASIPFLENDDSNR-ALMGANMQRQAVPLINPQSPLIGTGMEYKAAH 684
Query: 127 --ARALIGKELGDI-------ISVNAPGGEK 148
AL+ K G++ + V P GE
Sbjct: 685 DSGAALLCKRAGEVVYVDANKVRVRTPEGEV 715
>gi|254469383|ref|ZP_05082788.1| lipoprotein releasing system transmembrane protein lole
[Pseudovibrio sp. JE062]
gi|211961218|gb|EEA96413.1| lipoprotein releasing system transmembrane protein lole
[Pseudovibrio sp. JE062]
Length = 407
Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT 149
++G E + ++I S +AR L G +GD + V P G T
Sbjct: 127 LLGTLEGFDEGEGIAIGSRLARQL-GVTVGDTVRVITPRGSIT 168
>gi|332231787|ref|XP_003265076.1| PREDICTED: transmembrane and coiled-coil domains protein 1 isoform
3 [Nomascus leucogenys]
gi|332817887|ref|XP_003310054.1| PREDICTED: transmembrane and coiled-coil domains protein 1 isoform
2 [Pan troglodytes]
gi|194373639|dbj|BAG56915.1| unnamed protein product [Homo sapiens]
Length = 474
Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67
++++++L + + I+ E + + Y+ A+++Q E R++++E
Sbjct: 327 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 384
>gi|57101014|ref|XP_541758.1| PREDICTED: similar to Transmembrane and coiled-coil domains protein
1 [Canis familiaris]
Length = 677
Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67
++++++L + + I+ E + + Y+ A+++Q E R++++E
Sbjct: 530 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 587
>gi|50510629|dbj|BAD32300.1| mKIAA0779 protein [Mus musculus]
Length = 662
Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67
++++++L + + I+ E + + Y+ A+++Q E R++++E
Sbjct: 515 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 572
>gi|119610157|gb|EAW89751.1| hCG1773689, isoform CRA_f [Homo sapiens]
Length = 540
Score = 33.7 bits (76), Expect = 9.7, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 47/139 (33%), Gaps = 7/139 (5%)
Query: 9 SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELEN 68
++++E+ + P I A A E A + E + L++
Sbjct: 40 RNAIAQMRKEMEALSHQIPPPIQTAAESTDANQPDPEAGGDAATPDYVLALEAEIRTLKH 99
Query: 69 IITRAE-----VIDISTMSGDRIAF-GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
E V+D MS + + E G + Q G +A G V
Sbjct: 100 KFKTLEKHLEDVLDPLKMSSPHAESQPSVRTSTETTGGSAQAGQAGGSVQAGQAGGSVQA 159
Query: 123 SSPIARALIGKELGDIISV 141
P++ L ++LGD + +
Sbjct: 160 G-PVSSGLALRKLGDRVQL 177
>gi|20987344|gb|AAH29759.1| Tmcc1 protein [Mus musculus]
Length = 689
Score = 33.7 bits (76), Expect = 9.7, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67
++++++L + + I+ E + + Y+ A+++Q E R++++E
Sbjct: 542 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 599
>gi|148667134|gb|EDK99550.1| mCG142097 [Mus musculus]
Length = 461
Score = 33.7 bits (76), Expect = 9.8, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67
++++++L + + I+ E + + Y+ A+++Q E R++++E
Sbjct: 314 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 371
>gi|256017222|ref|NP_803131.1| transmembrane and coiled-coil domains protein 1 [Mus musculus]
gi|82582294|sp|Q69ZZ6|TMCC1_MOUSE RecName: Full=Transmembrane and coiled-coil domains protein 1
Length = 649
Score = 33.7 bits (76), Expect = 9.9, Method: Composition-based stats.
Identities = 9/58 (15%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG---RMAELE 67
++++++L + + I+ E + + Y+ A+++Q E R++++E
Sbjct: 502 ERLEEQLNDLTELHQNEILNLKQELASMEEKIAYQSYERARDIQEALEACQTRISKME 559
>gi|309811282|ref|ZP_07705071.1| ribosomal protein S12 methylthiotransferase RimO [Dermacoccus sp.
Ellin185]
gi|308434764|gb|EFP58607.1| ribosomal protein S12 methylthiotransferase RimO [Dermacoccus sp.
Ellin185]
Length = 493
Score = 33.7 bits (76), Expect = 10.0, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 8/129 (6%)
Query: 17 QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
EL R ++ + G +E A K Q+ + R+ + +
Sbjct: 358 DELEQFLVAARLDVVGVFGYSDEDGTEAET---YADKLPQDEIDARLEHFRTLTEELNLQ 414
Query: 77 DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD--QEADVQSGLVSISSPIARALIGKE 134
G+R+ + + + + VG Q+ G+ + +P R L
Sbjct: 415 RAEERIGERLEVLIEATESDDEDDPEAAVRHVGRAGQQGPDVDGMTYVEAPDGREL---R 471
Query: 135 LGDIISVNA 143
+GDI+ V
Sbjct: 472 VGDIVEVEV 480
>gi|34495237|gb|AAQ73468.1| erythrocyte binding protein 2 [Plasmodium falciparum]
Length = 2019
Score = 33.7 bits (76), Expect = 10.0, Method: Composition-based stats.
Identities = 13/67 (19%), Positives = 29/67 (43%)
Query: 14 KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
+I++E + ++ +R + I EAR D E + A++ + + R E I +
Sbjct: 1094 RIEEESKKKEAMKRAEDARRIEEARRAEDARRIEEARRAEDARRVEIARRVEDARRIEIS 1153
Query: 74 EVIDIST 80
+ +
Sbjct: 1154 RRAEDAK 1160
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.314 0.157 0.465
Lambda K H
0.267 0.0477 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,206,191,022
Number of Sequences: 14124377
Number of extensions: 131980696
Number of successful extensions: 482909
Number of sequences better than 10.0: 4180
Number of HSP's better than 10.0 without gapping: 6222
Number of HSP's successfully gapped in prelim test: 1061
Number of HSP's that attempted gapping in prelim test: 470263
Number of HSP's gapped (non-prelim): 10389
length of query: 158
length of database: 4,842,793,630
effective HSP length: 120
effective length of query: 38
effective length of database: 3,147,868,390
effective search space: 119618998820
effective search space used: 119618998820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 76 (33.7 bits)