BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780440|ref|YP_003064853.1| transcription elongation
factor GreA [Candidatus Liberibacter asiaticus str. psy62]
         (158 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|227822120|ref|YP_002826091.1| transcription elongation factor GreA [Sinorhizobium fredii NGR234]
 gi|227341120|gb|ACP25338.1| transcription elongation factor GreA [Sinorhizobium fredii NGR234]
          Length = 255

 Score =  166 bits (420), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 111/157 (70%), Positives = 135/157 (85%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MVDK+P+T  GF  +Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 98  MVDKVPMTQGGFANLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 157

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR++ELE++I RAEVID+S MSG +I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 158 GRVSELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKAGRI 217

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSPIARALIGKE+GD I VNAPGG K YEIL V W
Sbjct: 218 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW 254


>gi|311108151|ref|YP_003981004.1| transcription elongation factor GreA [Achromobacter xylosoxidans
           A8]
 gi|310762840|gb|ADP18289.1| transcription elongation factor GreA [Achromobacter xylosoxidans
           A8]
          Length = 232

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +++Q+EL+  +  ERP +I AI+EARA GDLSENAEY AA+E Q   EG
Sbjct: 75  MSAIPLTVRGAERLQEELQRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEG 134

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE  ++ A +ID +   +  R  FGATV + + +SGD+  YQIVGD EAD++S L+
Sbjct: 135 RIAELEGTLSNAHLIDPTALEAEGRAVFGATVDIEDLDSGDRVTYQIVGDVEADIKSNLI 194

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSP+ARALIGK  GD++ V AP G + YE+L V +I
Sbjct: 195 SVSSPVARALIGKSEGDVVEVVAPAGVREYEVLGVRYI 232


>gi|332974639|gb|EGK11556.1| transcription elongation factor GreA [Kingella kingae ATCC 23330]
          Length = 186

 Score =  163 bits (413), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 80/159 (50%), Positives = 116/159 (72%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++ KIP+T  G ++++ EL+  +   RP +I AI+EAR++GDLSENAEY+AAK+ Q   E
Sbjct: 28  IMKKIPLTVHGAERLKAELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKDRQGFIE 87

Query: 61  GRMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+AELEN ++ A++ID   +    +I FGATV+L++ +S ++  YQIVGD EAD++   
Sbjct: 88  GRIAELENKLSHAQIIDPKEIHADGKIVFGATVNLMDLDSDEESCYQIVGDDEADIKLFK 147

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S++SPIARALIGKE GD+  V AP G + YEIL V +I
Sbjct: 148 ISVNSPIARALIGKEEGDVAEVQAPSGIREYEILTVQYI 186


>gi|209965306|ref|YP_002298221.1| transcription elongation factor GreA [Rhodospirillum centenum SW]
 gi|209958772|gb|ACI99408.1| transcription elongation factor GreA [Rhodospirillum centenum SW]
          Length = 157

 Score =  163 bits (412), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 82/156 (52%), Positives = 123/156 (78%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T++GF ++Q+EL+  +  ERP +IKAI+EAR +GDLSENAEY AA+E Q+  EG
Sbjct: 1   MEKVPMTARGFTRLQEELKQLKSVERPAVIKAIAEAREHGDLSENAEYHAARERQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+ I+RAEVID + +SG  I FGATV+L ++++ ++  YQIVG  E+D+++G +S
Sbjct: 61  RVMELEDKISRAEVIDPTKLSGSAIKFGATVTLADEDTDEEVTYQIVGQDESDIKAGFIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SP+ARALIGK++GD + V  PGG K+YEI  + +
Sbjct: 121 ITSPLARALIGKQVGDSVEVTTPGGSKSYEITGIQF 156


>gi|110680576|ref|YP_683583.1| transcription elongation factor GreA [Roseobacter denitrificans OCh
           114]
 gi|109456692|gb|ABG32897.1| transcription elongation factor GreA [Roseobacter denitrificans OCh
           114]
          Length = 312

 Score =  162 bits (410), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 83/156 (53%), Positives = 118/156 (75%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DKIP+T KG   ++ EL+  +  ERP II AI+EAR +GDLSENAEY +A+E  +  EG
Sbjct: 157 MDKIPMTRKGHSDLEAELKNLKSVERPAIISAIAEAREHGDLSENAEYHSAREKHSFIEG 216

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE ++  AEVID S MS   I FGATV+LV++++ ++K +QIVG+ EA+V+ GL++
Sbjct: 217 RIKELEGVLGLAEVIDPSKMS-GAIKFGATVTLVDEDTDEEKTWQIVGEHEANVEKGLLN 275

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SPIARALIGK+ GD + V  PGG+K YE+L++++
Sbjct: 276 IKSPIARALIGKDEGDSVEVRTPGGQKAYEVLKIVY 311


>gi|144897958|emb|CAM74822.1| Prokaryotic transcription elongation factor GreA [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 157

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 86/157 (54%), Positives = 122/157 (77%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  G   ++ ELR  +  ERP +IKAI+EAR +GDLSENAEY AA+E Q+  EG
Sbjct: 1   MEKIPMTPAGLTTLEDELRNLKAVERPAVIKAIAEAREHGDLSENAEYHAARERQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AELE++I+RA+VIDI+ MSGD++ FGATV+L +++S D+  Y IVG  EAD++SG +S
Sbjct: 61  RVAELEDVISRAQVIDIALMSGDQVRFGATVTLADEDSDDEVVYTIVGAHEADIKSGRMS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + SP+ARALIGK +GD + V  PGG K+YE++ V ++
Sbjct: 121 VHSPLARALIGKHIGDTVEVTTPGGSKSYEVVDVRFV 157


>gi|218779092|ref|YP_002430410.1| transcription elongation factor GreA [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760476|gb|ACL02942.1| transcription elongation factor GreA [Desulfatibacillum
           alkenivorans AK-01]
          Length = 155

 Score =  162 bits (409), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/155 (45%), Positives = 111/155 (71%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++ P+T +G +++Q EL   +  ERPR I+ I EARA+GDLSENAEY AAKE Q    G
Sbjct: 1   MERTPITPEGLERLQNELVQLKTVERPRNIQDIEEARAHGDLSENAEYHAAKERQGFIAG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AELE  +  A+VID ST  GD   FGATV L   ++G++ +YQ++G  E+++Q+G +S
Sbjct: 61  RIAELEYKVASADVIDPSTQKGDTAVFGATVVLENIDTGEEVSYQLLGPDESNIQAGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           ++SP+ +AL+GK+ GD + V  PGG++ +E++++ 
Sbjct: 121 VTSPLGKALVGKKPGDEVKVQTPGGQRHFEVVEIQ 155


>gi|270158808|ref|ZP_06187465.1| transcription elongation factor GreA domain protein [Legionella
           longbeachae D-4968]
 gi|289166397|ref|YP_003456535.1| transcription elongation factor GreA [Legionella longbeachae
           NSW150]
 gi|269990833|gb|EEZ97087.1| transcription elongation factor GreA domain protein [Legionella
           longbeachae D-4968]
 gi|288859570|emb|CBJ13538.1| transcription elongation factor GreA [Legionella longbeachae
           NSW150]
          Length = 158

 Score =  161 bits (407), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T  G + +++EL   +  +RPRI+ AI+ ARA+GDL ENAEY AA+E Q+ NEG
Sbjct: 1   MSKYPMTVHGAEALKEELHRLKFVDRPRIVDAIATARAHGDLKENAEYHAAREQQSFNEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ELE  ++ A++IDIS   +  ++ FG TV++    +  +  YQIVG+ EAD++   +
Sbjct: 61  RIQELEAKLSHAQIIDISKLPNNGKVVFGCTVTICNVANETQLTYQIVGEDEADIKQNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S SSPI R LIGKEL D ++VN PGG   YEI+ V +I
Sbjct: 121 SYSSPIGRGLIGKELDDSVTVNTPGGLVEYEIIDVQYI 158


>gi|114328953|ref|YP_746110.1| transcription elongation factor GreA [Granulibacter bethesdensis
           CGDNIH1]
 gi|114317127|gb|ABI63187.1| transcription elongation factor greA [Granulibacter bethesdensis
           CGDNIH1]
          Length = 157

 Score =  161 bits (406), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 85/156 (54%), Positives = 122/156 (78%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T+ G  +++ ELR  +  ERP +I+AI+EAR++GDLSENAEY AA+E Q+  EG
Sbjct: 1   MQKFPMTAGGLQRLEDELRQLKSVERPAVIRAIAEARSHGDLSENAEYHAARERQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I++ AEVID ST+SGD++ FGA V +V++ +  + +YQIVG  EAD++ GL+S
Sbjct: 61  RIEELEVIVSAAEVIDPSTLSGDQVKFGAHVQIVDEETDKEASYQIVGLHEADIKQGLLS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +SSP+A+ALIGK+ GD ISV APGG+++YEIL V +
Sbjct: 121 VSSPLAKALIGKKPGDTISVPAPGGDRSYEILSVRF 156


>gi|83594219|ref|YP_427971.1| transcription elongation factor GreA [Rhodospirillum rubrum ATCC
           11170]
 gi|123766955|sp|Q2RQB1|GREA_RHORT RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|83577133|gb|ABC23684.1| GreA/GreB family elongation factor [Rhodospirillum rubrum ATCC
           11170]
          Length = 157

 Score =  160 bits (405), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 83/156 (53%), Positives = 121/156 (77%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  G  +++ EL+  +  +RP +I+AISEAR +GDLSENAEY AA+E Q+  EG
Sbjct: 1   MEKIPMTPDGLARLEAELKSLKSVDRPAVIRAISEARDHGDLSENAEYHAARERQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE++ +RAEVIDIS +SGD + FGATVS+++++S ++  YQIVG  EAD+++G +S
Sbjct: 61  RIKELEDVTSRAEVIDISKLSGDTVRFGATVSVLDEDSEEQTTYQIVGAHEADLKAGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ++SPI +ALIGK++GD I V APGG K YE+  V +
Sbjct: 121 VASPIGKALIGKKVGDSIEVKAPGGSKFYEVTMVRF 156


>gi|149773197|dbj|BAF64773.1| transcription elongation factor [Shewanella livingstonensis]
          Length = 204

 Score =  160 bits (405), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 66/159 (41%), Positives = 110/159 (69%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++ K+P+T  G D++++EL   + + RP+I +AI+ AR  GDL ENAEY AA+E Q + E
Sbjct: 46  IMSKVPMTVVGADQLRKELELLKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICE 105

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
            R+ ++E  ++ A++ID++ +    R+ FG TV+++  ++  +  Y+IVGD EAD++  L
Sbjct: 106 ARIRDIEGKLSNAQIIDVTKLENTGRVIFGTTVTILNIDTDAEVTYRIVGDDEADIKQNL 165

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S++SPIAR LIGK  GD +S+  PGG   YEI++V ++
Sbjct: 166 ISVNSPIARGLIGKSEGDEVSITTPGGLTDYEIVKVQYL 204


>gi|163857848|ref|YP_001632146.1| hypothetical protein Bpet3535 [Bordetella petrii DSM 12804]
 gi|163261576|emb|CAP43878.1| greA [Bordetella petrii]
          Length = 158

 Score =  160 bits (404), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T++G +++Q EL   +  ERP +I AI+EARA GDLSENAEY AA+E Q   EG
Sbjct: 1   MSAIPLTARGAERLQAELHRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE  ++ A +ID +   +  R  FGATV + + +SGD+ +YQIVGD EAD++S L+
Sbjct: 61  RIAELEGTLSNAHIIDPAALDADGRAVFGATVDIEDLDSGDRLSYQIVGDVEADIKSNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSP+ARALIGK  GD++ V AP G + YE+L V +I
Sbjct: 121 SVSSPVARALIGKSEGDVVEVKAPSGVREYEVLGVRYI 158


>gi|329848667|ref|ZP_08263695.1| transcription elongation factor greA [Asticcacaulis biprosthecum
           C19]
 gi|328843730|gb|EGF93299.1| transcription elongation factor greA [Asticcacaulis biprosthecum
           C19]
          Length = 157

 Score =  159 bits (403), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 84/157 (53%), Positives = 124/157 (78%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T  G+  +  EL+  +  ERP +I AISEAR++GDLSENAEY AAKE Q   EG
Sbjct: 1   MEKVPMTVGGYKSLDDELKRLKSIERPAVIAAISEARSHGDLSENAEYHAAKERQGWIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++A++E+ I+RA+VID++ +SG  I FGATV++V++++ ++  YQ+VGD EADV+SG +S
Sbjct: 61  QIADIEDKISRAQVIDVTKLSGQNIKFGATVTVVDEDTEEEGRYQVVGDHEADVRSGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SSP++RA+IGKE+GD++ V  PGG K YEIL+V WI
Sbjct: 121 LSSPLSRAMIGKEVGDVVEVVTPGGVKAYEILKVEWI 157


>gi|30249624|ref|NP_841694.1| transcription elongation factor GreA/GreB [Nitrosomonas europaea
           ATCC 19718]
 gi|30138987|emb|CAD85571.1| Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas
           europaea ATCC 19718]
          Length = 173

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++ IP+T  G +K++ EL   +   RP +I AI+EAR++GDLSENAEY AAKE Q   EG
Sbjct: 16  MNAIPITQAGAEKLRAELHEMKTVHRPAVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 75

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A++I+ +T  +     FGAT+ L++  +     YQIVGD EAD++ G +
Sbjct: 76  RIAELESKLSNAQIINPATLNADGACVFGATIDLMDLGNNTTVTYQIVGDDEADIKQGKI 135

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GDI  V APGG + YEIL V +I
Sbjct: 136 SISSPIARALIGKYAGDIAEVQAPGGVREYEILDVKYI 173


>gi|294634505|ref|ZP_06713040.1| transcription elongation factor, cleaves 3 nucleotide of paused
           mRNA [Edwardsiella tarda ATCC 23685]
 gi|291092019|gb|EFE24580.1| transcription elongation factor, cleaves 3 nucleotide of paused
           mRNA [Edwardsiella tarda ATCC 23685]
          Length = 198

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 118/158 (74%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T +G +K+++EL + +   RP+II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 41  MNQIPMTLRGAEKLREELDFLKGTRRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 100

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M  + R+ FGATVS+   ++ D++ Y+IVGD EAD +  L+
Sbjct: 101 RIQEIEAKLSNAQVIDVTKMPNNGRVIFGATVSVENVDTEDQQTYRIVGDDEADFKHNLI 160

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE G+++++  PGGE  YEIL+V ++
Sbjct: 161 SVNSPIARGLIGKEEGEVVTIKTPGGEVEYEILKVEYL 198


>gi|288957102|ref|YP_003447443.1| transcription elongation factor [Azospirillum sp. B510]
 gi|288909410|dbj|BAI70899.1| transcription elongation factor [Azospirillum sp. B510]
          Length = 157

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/156 (50%), Positives = 121/156 (77%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T+ GF+++Q+EL+  +  ERP +IKAI+EAR +GDLSENAEY AA+E Q+  EG
Sbjct: 1   MEKVPMTAAGFNRLQEELKHLKITERPAVIKAIAEAREHGDLSENAEYHAARERQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+ I+RAEVID + ++G  + FGATV+L ++++ ++  YQIVG  E+D+++ L+S
Sbjct: 61  RVLELEDKISRAEVIDPAKLTGSTVKFGATVTLADQDTDEETTYQIVGQDESDIKNRLLS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I +P+ARALI K +GD + V+ PGG K YEI+ V +
Sbjct: 121 IQAPLARALINKSVGDSVEVSTPGGSKLYEIVSVEF 156


>gi|58038799|ref|YP_190763.1| transcription elongation factor GreA [Gluconobacter oxydans 621H]
 gi|58001213|gb|AAW60107.1| Transcription elongation factor [Gluconobacter oxydans 621H]
          Length = 157

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 86/156 (55%), Positives = 123/156 (78%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T+KG  +++ ELR  +  +RP +I+AI+EAR +GDLSENAEY AA++ Q+  EG
Sbjct: 1   MQKIPMTAKGQQRLEDELRTLKSVDRPAVIRAIAEAREHGDLSENAEYHAARDRQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE II+ AEVID ST++G R+ FGA + LV++ +  +  YQIVG  EAD++ GL+S
Sbjct: 61  RVLELEGIISNAEVIDPSTLTGTRVRFGAHIELVDEETDKEALYQIVGVHEADIKQGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ISSP+A+ALIGK++GD +SV APGG++TYEIL+V +
Sbjct: 121 ISSPLAKALIGKDVGDSVSVPAPGGDRTYEILKVTY 156


>gi|317405977|gb|EFV86255.1| GreA protein [Achromobacter xylosoxidans C54]
          Length = 158

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +++Q+EL+  +  ERP +I AI+EARA GDLSENAEY AA+E Q   EG
Sbjct: 1   MSAIPLTVRGAERLQEELQRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE  ++ A +ID  S  +  R  FGATV + + +SGD+  YQIVGD EAD++S L+
Sbjct: 61  RIAELEGTLSNAHLIDPTSLEAEGRAVFGATVDIEDLDSGDRVTYQIVGDVEADIKSNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSP+ARALIGK  GD++ V AP G + YE+L V +I
Sbjct: 121 SVSSPVARALIGKSEGDVVEVKAPAGVREYEVLSVRYI 158


>gi|238918415|ref|YP_002931929.1| hypothetical protein NT01EI_0456 [Edwardsiella ictaluri 93-146]
 gi|238867983|gb|ACR67694.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 158

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/158 (48%), Positives = 117/158 (74%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T +G +K+++EL + +   RP+II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTLRGAEKLREELDFLKGTRRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M  + R+ FG+TVS+   N+ D++ Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTKMPNNGRVIFGSTVSVENLNTEDQQTYRIVGDDEADFKHNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE GD++++  PGGE  YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEEGDVVTIKTPGGEVEYEILNVEYL 158


>gi|83309802|ref|YP_420066.1| transcription elongation factor GreA [Magnetospirillum magneticum
           AMB-1]
 gi|82944643|dbj|BAE49507.1| Transcription elongation factor [Magnetospirillum magneticum AMB-1]
          Length = 157

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/156 (54%), Positives = 124/156 (79%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  G  ++++ELR  +  ER  +I+AI+EAR +GDLSENAEY AA+E Q+  EG
Sbjct: 1   MEKIPMTPAGLAQLEEELRTLKYVERQAVIRAIAEAREHGDLSENAEYHAARERQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R++ELE+II+RA+VIDI+++SGD++ FGATV+L ++++ D+  Y IVG  EAD++SG +S
Sbjct: 61  RVSELEDIISRAQVIDIASLSGDQVRFGATVTLADEDTDDEVVYTIVGAHEADIKSGRMS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SP+ARALIGK LGD + V APGG K+YEI+ V +
Sbjct: 121 VHSPLARALIGKHLGDTVEVTAPGGSKSYEIVDVRF 156


>gi|269137754|ref|YP_003294454.1| transcription elongation factor [Edwardsiella tarda EIB202]
 gi|267983414|gb|ACY83243.1| transcription elongation factor [Edwardsiella tarda EIB202]
 gi|304557811|gb|ADM40475.1| Transcription elongation factor GreA [Edwardsiella tarda FL6-60]
          Length = 158

 Score =  159 bits (401), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 118/158 (74%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T +G +K+++EL + +   RP+II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTLRGAEKLREELDFLKGTRRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M  + R+ FG+TVS+   ++ D++ Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTKMPNNGRVIFGSTVSVENLDTEDQQTYRIVGDDEADFKHNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE GD++++  PGGE  YEIL+V ++
Sbjct: 121 SVNSPIARGLIGKEEGDVVTIKTPGGEVEYEILKVEYL 158


>gi|162149110|ref|YP_001603571.1| transcription elongation factor GreA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787687|emb|CAP57283.1| Transcription elongation factor greA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 157

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/156 (55%), Positives = 125/156 (80%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T KG  ++++ELR  + EERP +I+AI+EAR++GDLSENAEY AA++ Q+  EG
Sbjct: 1   MQKFPMTGKGLQRLEEELRKLKSEERPAVIRAIAEARSHGDLSENAEYHAARDRQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+II+ AEVID +++SGD++ FGA VSLV++ +  +  YQIVG  EAD++ GL+S
Sbjct: 61  RILELEDIISSAEVIDPASLSGDQVKFGAQVSLVDEETDKEATYQIVGVHEADIKQGLLS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +SSP+A++LIGK +GD +SV APGG++TYEIL V +
Sbjct: 121 VSSPLAKSLIGKRIGDSVSVPAPGGDRTYEILAVTY 156


>gi|293607001|ref|ZP_06689345.1| transcription elongation factor GreA [Achromobacter piechaudii ATCC
           43553]
 gi|292814598|gb|EFF73735.1| transcription elongation factor GreA [Achromobacter piechaudii ATCC
           43553]
          Length = 158

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +++Q+EL+  +  ERP +I AI+EARA GDLSENAEY AA+E Q   EG
Sbjct: 1   MSAIPLTVRGAERLQEELQRLKTVERPAVINAIAEARAQGDLSENAEYDAARERQGFIEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE  ++ A +ID  S  +  R  FGATV + + +SGD+  YQIVGD EAD+++ L+
Sbjct: 61  RIAELEGTLSNAHLIDPTSLDAEGRAVFGATVDIEDLDSGDRVTYQIVGDVEADIKANLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSP+ARALIGK  GD++ V AP G + YE+L V +I
Sbjct: 121 SVSSPVARALIGKSEGDVVEVKAPAGVREYEVLGVRYI 158


>gi|313673623|ref|YP_004051734.1| transcription elongation factor grea [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940379|gb|ADR19571.1| transcription elongation factor GreA [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 157

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/154 (53%), Positives = 113/154 (73%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +D+IP+T +GF+K+++EL   +  ER  +I+AI EARA+GDLSENAEY AAKE Q L E 
Sbjct: 1   MDRIPITPEGFEKLKKELERLKTVERKEVIEAIKEARAHGDLSENAEYDAAKERQGLIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++AELE+ I R EVID S  SGD++ FG  V +    +G+KK Y+IVG  EAD+  G +S
Sbjct: 61  KIAELESKIGRFEVIDPSNFSGDKVVFGVYVEIENVETGEKKRYRIVGPDEADISKGYIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           + SPIA+AL+GK +GD + V APGG+K YEIL +
Sbjct: 121 VISPIAKALMGKSVGDTVLVRAPGGDKEYEILDI 154


>gi|16273242|ref|NP_439483.1| transcription elongation factor GreA [Haemophilus influenzae Rd
           KW20]
 gi|260581322|ref|ZP_05849138.1| transcription elongation factor GreB [Haemophilus influenzae RdAW]
 gi|1170015|sp|P43881|GREA_HAEIN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|1574790|gb|AAC22976.1| transcription elongation factor (greA) [Haemophilus influenzae Rd
           KW20]
 gi|260091989|gb|EEW75936.1| transcription elongation factor GreB [Haemophilus influenzae RdAW]
          Length = 158

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G +++++EL + +   RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A++ID+S M  + ++ FGATV LV  N+ ++  Y+IVGD EAD++SGL+
Sbjct: 61  RIQEIEGKLGNAQIIDVSKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKEL D +++  PGG   ++I++V +I
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158


>gi|163761166|ref|ZP_02168243.1| transcription elongation factor (transcript cleavage factor)
           protein [Hoeflea phototrophica DFL-43]
 gi|162281717|gb|EDQ32011.1| transcription elongation factor (transcript cleavage factor)
           protein [Hoeflea phototrophica DFL-43]
          Length = 158

 Score =  158 bits (399), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 107/157 (68%), Positives = 132/157 (84%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T  G+ K+Q+ELRWRQQ ERPRII+AISEARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVEKVPMTQGGYTKLQEELRWRQQSERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE+  +RAE+ID+S MSGD + FGATVSLV++++ ++K YQIVGDQEADV+ G +
Sbjct: 61  GRIGELEDYTSRAEIIDVSKMSGDTVKFGATVSLVDEDTDEEKTYQIVGDQEADVKQGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSPI+RALIGK +GD I V APGG K YEIL V W
Sbjct: 121 SISSPISRALIGKSVGDSIEVVAPGGSKAYEILAVKW 157


>gi|291613526|ref|YP_003523683.1| transcription elongation factor GreA [Sideroxydans lithotrophicus
           ES-1]
 gi|291583638|gb|ADE11296.1| transcription elongation factor GreA [Sideroxydans lithotrophicus
           ES-1]
          Length = 158

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/158 (53%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T  G + ++QEL   +  +RP +I AISEARA GDLSENAEY+AAKE Q+  EG
Sbjct: 1   MSKVPLTVNGAELLRQELHRLKTVDRPSVINAISEARAQGDLSENAEYEAAKERQSFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ELE  +  A+VID  T  +  R  FG+TV + + N+GD   YQIVGD EAD++   +
Sbjct: 61  RIVELEFKLGSAQVIDPKTVNADGRCVFGSTVVIEDTNNGDVVTYQIVGDDEADIKQRKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GDI  V APGG + YE++ V +I
Sbjct: 121 SISSPIARALIGKVSGDIAEVQAPGGIREYEVVDVQYI 158


>gi|296116673|ref|ZP_06835283.1| transcription elongation factor GreA [Gluconacetobacter hansenii
           ATCC 23769]
 gi|295976885|gb|EFG83653.1| transcription elongation factor GreA [Gluconacetobacter hansenii
           ATCC 23769]
          Length = 157

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 85/156 (54%), Positives = 121/156 (77%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T  G  +++ ELR  + EERP II+AI+EAR++GDLSENAEY AA+E Q+  EG
Sbjct: 1   MQKFPMTGPGLQRLEDELRKLKSEERPAIIRAIAEARSHGDLSENAEYHAARERQSFTEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I++ AEVID +++SGD++ FGA V LV++ +  +  YQIVG  EAD++ GL+S
Sbjct: 61  RILELEEIVSSAEVIDPASLSGDQVKFGARVHLVDEETDKEATYQIVGVYEADIKQGLLS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +SSP+A++LIGK +GD +SV APGG++TYEIL V +
Sbjct: 121 VSSPLAKSLIGKSVGDTVSVPAPGGDRTYEILAVTY 156


>gi|315122111|ref|YP_004062600.1| transcription elongation factor GreA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495513|gb|ADR52112.1| transcription elongation factor GreA [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 158

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 141/158 (89%), Positives = 151/158 (95%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEAR+YGDLSENAEYQAAKELQ++NE
Sbjct: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARSYGDLSENAEYQAAKELQSMNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+AELENI T AEVIDIS MSG ++AFGATVSLV++ SGDKKNYQIVGDQEADVQSGLV
Sbjct: 61  GRIAELENITTCAEVIDISKMSGSKVAFGATVSLVDETSGDKKNYQIVGDQEADVQSGLV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGKELGD +SVNAPGG+K YEILQVLWI
Sbjct: 121 SISSPIARALIGKELGDTVSVNAPGGQKNYEILQVLWI 158


>gi|183600357|ref|ZP_02961850.1| hypothetical protein PROSTU_03920 [Providencia stuartii ATCC 25827]
 gi|188020148|gb|EDU58188.1| hypothetical protein PROSTU_03920 [Providencia stuartii ATCC 25827]
          Length = 158

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 117/158 (74%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T  G DK+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVLGADKLREELDYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++ A+VID++ M+ + R+ FGATV+++  ++ ++  Y+IVGD EAD++  L+
Sbjct: 61  RIQEIESKLSHAQVIDVTKMTNNGRVIFGATVTVLNVDTDEELTYRIVGDDEADIKINLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++++  PGG+  +EIL+V +I
Sbjct: 121 SVNSPIARGLIGKEQDDVVTIKTPGGDVEFEILKVEYI 158


>gi|170741569|ref|YP_001770224.1| transcription elongation factor GreA [Methylobacterium sp. 4-46]
 gi|238688050|sp|B0U8M0|GREA_METS4 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|168195843|gb|ACA17790.1| transcription elongation factor GreA [Methylobacterium sp. 4-46]
          Length = 158

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 93/157 (59%), Positives = 132/157 (84%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK+P+T +G+  +++EL+ RQQ ERPRII+AI+EARA GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MDKVPITIRGYAALEEELKHRQQVERPRIIQAIAEARALGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE++I+RAE+ID+S +SG ++ FGATV L+++++ ++K YQIVG+ EADV+SG VS
Sbjct: 61  RVLELESLISRAEIIDVSKLSGTKVKFGATVQLIDEDTEEEKTYQIVGEPEADVRSGRVS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I+SP+ARALIGK +GD + V  PGG K+YEI+ + ++
Sbjct: 121 ITSPVARALIGKGVGDTVEVTTPGGGKSYEIVGIRYV 157


>gi|74317147|ref|YP_314887.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC
           25259]
 gi|74056642|gb|AAZ97082.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC
           25259]
          Length = 158

 Score =  158 bits (398), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 86/157 (54%), Positives = 113/157 (71%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T  G +K++ EL+  +  +RP +I+AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MTKFPLTVVGAEKLRAELQHLKSVQRPAVIQAIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE  ++ A++ID +T  +  RI FGATV L +  SGD   YQIVGD EAD++ G +
Sbjct: 61  RIAELEGKLSNAQIIDPTTLDADGRIVFGATVDLEDVESGDSVTYQIVGDDEADIKQGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+SSPIARALIGK  GD + V APGG + YE+L VL+
Sbjct: 121 SVSSPIARALIGKYAGDAVDVQAPGGVRQYEVLDVLY 157


>gi|91784541|ref|YP_559747.1| transcription elongation factor GreA [Burkholderia xenovorans
           LB400]
 gi|91688495|gb|ABE31695.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400]
          Length = 176

 Score =  158 bits (398), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  +P+T +G + ++ EL+  +  ERP +I +I+EARA GDLSENAEY AAKE Q   EG
Sbjct: 19  MSTVPLTKRGAEMLRDELQRLKSVERPSVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 78

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ +  A+VID  +  +  R+ FGATV L + NSG    YQIVGD EAD+  GL+
Sbjct: 79  RIAEIESKLAGAQVIDPAAVEADGRVVFGATVELEDLNSGASVKYQIVGDDEADIDHGLI 138

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+ SV APGG + YEI+ V ++
Sbjct: 139 SISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 176


>gi|319897099|ref|YP_004135294.1| transcription elongation factor [Haemophilus influenzae F3031]
 gi|317432603|emb|CBY80964.1| transcription elongation factor [Haemophilus influenzae F3031]
          Length = 158

 Score =  158 bits (398), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G ++++QEL + +   RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQQIPMTVRGAEQLRQELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A+VID++ M  + ++ FG TV LV  ++ ++  Y+IVGD EAD++SGL+
Sbjct: 61  RIQEIEGKLGNAQVIDVTKMPNNGKVIFGTTVVLVNTDTDEEVTYRIVGDDEADIKSGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKEL D +++  PGG   ++I++V +I
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158


>gi|312114890|ref|YP_004012486.1| transcription elongation factor GreA [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220019|gb|ADP71387.1| transcription elongation factor GreA [Rhodomicrobium vannielii ATCC
           17100]
          Length = 159

 Score =  158 bits (398), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 91/158 (57%), Positives = 127/158 (80%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +K+P+T++G   ++ ELR  +  ER RIIKAI+EAR++GDLSENAEY AAKE Q +NE
Sbjct: 1   MSEKVPMTAQGHAALEAELRILRSVERQRIIKAIAEARSHGDLSENAEYHAAKEAQGMNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+LE+ ++RAEVIDIS +SG+ + FGATV+LV++++ ++  YQIVGD EADV++G V
Sbjct: 61  AKVADLEDKLSRAEVIDISKLSGETVKFGATVTLVDEDTEEEVKYQIVGDLEADVRNGKV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI SPIARALIGK+ GD + VN P G K+YEIL+V ++
Sbjct: 121 SIGSPIARALIGKKAGDSVEVNTPRGAKSYEILKVEFL 158


>gi|253991511|ref|YP_003042867.1| transcription elongation factor GreA [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|211638389|emb|CAR67011.1| transcription elongation factor grea (transcript cleavage facto
           grea) [Photorhabdus asymbiotica subsp. asymbiotica ATCC
           43949]
 gi|253782961|emb|CAQ86126.1| transcription elongation factor grea (transcript cleavage facto
           grea) [Photorhabdus asymbiotica]
          Length = 158

 Score =  158 bits (398), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 77/158 (48%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G DK+++EL + +   RP+II  I+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGADKLREELDYLKNVRRPKIISDIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M    R+ FGATV+ +  N+ +++ Y+IVGD EAD++  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTKMPKTGRVIFGATVTALNVNTDEEQTYRIVGDDEADIKENLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ DI+++  PGGE  YEIL+V +I
Sbjct: 121 SVNSPIARGLIGKEVDDIVTIKTPGGEVEYEILKVEYI 158


>gi|71906579|ref|YP_284166.1| transcription elongation factor GreA [Dechloromonas aromatica RCB]
 gi|71846200|gb|AAZ45696.1| GreA/GreB family elongation factor [Dechloromonas aromatica RCB]
          Length = 172

 Score =  157 bits (397), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 76/157 (48%), Positives = 111/157 (70%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T  G +K+++EL   +  +RP +I AI+EAR++GDLSENAEY AAKE Q   EG
Sbjct: 15  MSKVPLTVAGAEKLREELHRLKTVDRPWVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 74

Query: 62  RMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A++ID     +  R  FGATV + +++SG    YQIVG+ EAD+++G +
Sbjct: 75  RIQEVEGKLSNAQIIDPKLLDADGRCVFGATVQMEDQDSGAGATYQIVGEDEADIKAGKI 134

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SP+ARALIGK  GDI  V APGG + YEI+ V +
Sbjct: 135 SVNSPMARALIGKYAGDIAQVQAPGGIREYEIIDVRY 171


>gi|315634153|ref|ZP_07889442.1| transcription elongation factor GreA [Aggregatibacter segnis ATCC
           33393]
 gi|315477403|gb|EFU68146.1| transcription elongation factor GreA [Aggregatibacter segnis ATCC
           33393]
          Length = 158

 Score =  157 bits (397), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G   +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQQIPMTVRGAQLLREELDYLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  ++VID++ +  + ++ FGATV L   N+ ++  Y+IVGD EAD+++GL+
Sbjct: 61  RIQEIEGKLGNSQVIDVTKIPNNGKVIFGATVVLFNTNTDEEVTYRIVGDDEADIKNGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKE+ D++++  PGG   +EI++V ++
Sbjct: 121 SVNSPIARGLVGKEVDDVVNITTPGGVVEFEIIEVEYV 158


>gi|37528357|ref|NP_931702.1| transcription elongation factor GreA [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787795|emb|CAE16910.1| transcription elongation factor greA (transcript cleavage factor)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 158

 Score =  157 bits (397), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G DK+++EL + +   RP+II  I+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGADKLREELDYLKNVRRPKIISDIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M    R+ FG TV+++  N+ +++ Y+IVGD EAD++  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTKMPKGGRVIFGTTVTVLNVNTDEEQTYRIVGDDEADIKENLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D++ +  PGGE  YEIL+V +I
Sbjct: 121 SVNSPIARGLIGKEVDDVVIIKTPGGEVEYEILKVEYI 158


>gi|148560214|ref|YP_001259382.1| transcription elongation factor GreA [Brucella ovis ATCC 25840]
 gi|148371471|gb|ABQ61450.1| transcription elongation factor GreA [Brucella ovis ATCC 25840]
          Length = 203

 Score =  157 bits (397), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 101/157 (64%), Positives = 137/157 (87%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 47  MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 106

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 107 RINELEDLVARAEVIDVSKLTGDRIQFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 166

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK  GD I VNAPGG ++YEI+ + ++
Sbjct: 167 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 203


>gi|68250001|ref|YP_249113.1| transcription elongation factor GreA [Haemophilus influenzae
           86-028NP]
 gi|145629417|ref|ZP_01785215.1| transcription elongation factor GreA [Haemophilus influenzae
           22.1-21]
 gi|145630776|ref|ZP_01786554.1| transcription elongation factor GreA [Haemophilus influenzae R3021]
 gi|145634950|ref|ZP_01790657.1| transcription elongation factor GreA [Haemophilus influenzae
           PittAA]
 gi|145636182|ref|ZP_01791852.1| transcription elongation factor GreA [Haemophilus influenzae
           PittHH]
 gi|145638911|ref|ZP_01794519.1| transcription elongation factor GreA [Haemophilus influenzae
           PittII]
 gi|148826011|ref|YP_001290764.1| transcription elongation factor GreA [Haemophilus influenzae
           PittEE]
 gi|148826969|ref|YP_001291722.1| transcription elongation factor GreA [Haemophilus influenzae
           PittGG]
 gi|229847491|ref|ZP_04467588.1| transcription elongation factor GreA [Haemophilus influenzae
           7P49H1]
 gi|260582445|ref|ZP_05850236.1| transcription elongation factor GreB [Haemophilus influenzae NT127]
 gi|319776271|ref|YP_004138759.1| transcription elongation factor [Haemophilus influenzae F3047]
 gi|68058200|gb|AAX88453.1| transcription elongation factor GreA [Haemophilus influenzae
           86-028NP]
 gi|144978260|gb|EDJ88024.1| transcription elongation factor GreA [Haemophilus influenzae
           22.1-21]
 gi|144983658|gb|EDJ91118.1| transcription elongation factor GreA [Haemophilus influenzae R3021]
 gi|145267816|gb|EDK07813.1| transcription elongation factor GreA [Haemophilus influenzae
           PittAA]
 gi|145270704|gb|EDK10637.1| transcription elongation factor GreA [Haemophilus influenzae
           PittHH]
 gi|145271883|gb|EDK11792.1| transcription elongation factor GreA [Haemophilus influenzae
           PittII]
 gi|148716171|gb|ABQ98381.1| transcription elongation factor GreA [Haemophilus influenzae
           PittEE]
 gi|148718211|gb|ABQ99338.1| transcription elongation factor GreA [Haemophilus influenzae
           PittGG]
 gi|229809632|gb|EEP45359.1| transcription elongation factor GreA [Haemophilus influenzae
           7P49H1]
 gi|260094425|gb|EEW78322.1| transcription elongation factor GreB [Haemophilus influenzae NT127]
 gi|309750885|gb|ADO80869.1| Transcription elongation factor GreA [Haemophilus influenzae R2866]
 gi|309973148|gb|ADO96349.1| Transcription elongation factor GreA [Haemophilus influenzae R2846]
 gi|317450862|emb|CBY87086.1| transcription elongation factor [Haemophilus influenzae F3047]
          Length = 158

 Score =  157 bits (397), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G +++++EL + +   RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A++ID++ M  + ++ FGATV LV  N+ ++  Y+IVGD EAD++SGL+
Sbjct: 61  RIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKEL D +++  PGG   ++I++V +I
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158


>gi|206889798|ref|YP_002248384.1| transcription elongation factor GreA [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|238058240|sp|B5YJG9|GREA_THEYD RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|206741736|gb|ACI20793.1| transcription elongation factor GreA [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 158

 Score =  157 bits (397), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/157 (47%), Positives = 118/157 (75%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D+IP+T +G++K+++EL    + ERP IIKAI+EARA+GDLSENAEY AA+E Q+  E
Sbjct: 1   MTDRIPMTPEGYEKLKEELDRLIKIERPAIIKAIAEARAHGDLSENAEYHAAREKQSFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL+  + RA VID S ++ +++AFGA V +++ ++ ++K + +VG  EADV++G +
Sbjct: 61  GRIQELQAKLARAYVIDPSKINQNKVAFGAKVRVIDIDTEEEKEFHLVGPDEADVKNGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+ +ALIGKE+G+ +++ AP     YEI+ + +
Sbjct: 121 SITSPVGKALIGKEVGEQVTIKAPAKTFNYEIISISF 157


>gi|114321129|ref|YP_742812.1| transcription elongation factor GreA [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|122311293|sp|Q0A765|GREA_ALHEH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|114227523|gb|ABI57322.1| transcription elongation factor GreA [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 158

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 83/157 (52%), Positives = 124/157 (78%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T++G +K+++EL+  +  ERPRII+AI+EAR +GDL ENAEY AA+E Q+  EG
Sbjct: 1   MSKVPLTARGAEKLREELQRLKTVERPRIIQAIAEAREHGDLKENAEYHAAREQQSFVEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID  +  +  ++ FGATV LV+++SG +  YQIVG+ EAD++ GLV
Sbjct: 61  RIQEIEGKLSNAQVIDPAAVNAQGKVIFGATVDLVDEDSGKEVTYQIVGEDEADIKQGLV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIARALIGKE GD+++V APGGE+ YEI++V +
Sbjct: 121 SVNSPIARALIGKEEGDLVTVQAPGGEREYEIVEVRY 157


>gi|220934154|ref|YP_002513053.1| transcription elongation factor GreA [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|254799576|sp|B8GNX7|GREA_THISH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|219995464|gb|ACL72066.1| transcription elongation factor GreA [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 158

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 119/158 (75%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T  G +K++ EL+  + E+RPR+I AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MSKTPLTVAGANKLKAELQKLKSEDRPRVIAAIAEAREHGDLKENAEYHAAREQQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A++ID++T  +G ++ FGATV L ++ +G +  YQIVGD EAD++ G +
Sbjct: 61  RIKEIEAKLSNAQIIDVTTLNAGGKVVFGATVDLSDEETGKEVTYQIVGDDEADIKEGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIGKE GD+++V APGG+K YEI+ V +I
Sbjct: 121 SVNSPIARALIGKEEGDVVTVKAPGGDKDYEIVAVKYI 158


>gi|261345170|ref|ZP_05972814.1| transcription elongation factor GreA [Providencia rustigianii DSM
           4541]
 gi|282566862|gb|EFB72397.1| transcription elongation factor GreA [Providencia rustigianii DSM
           4541]
          Length = 158

 Score =  157 bits (397), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 117/158 (74%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T  G +K+++EL + +   RP II AI++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVFGANKLREELEYLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++ ++VIDI+ M  + R+ FGATV+++  ++ ++  Y+IVGD EAD++  L+
Sbjct: 61  RIQEIESKLSHSQVIDITKMVNNGRVIFGATVTVLNLDTDEELTYRIVGDDEADIKVNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKE+ D++++  PGG+  +EIL+V +I
Sbjct: 121 SVNSPIARGLVGKEVDDVVTIKTPGGDVEFEILKVEYI 158


>gi|261493679|ref|ZP_05990198.1| transcription elongation factor GreA [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261494346|ref|ZP_05990840.1| transcription elongation factor GreA [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261309995|gb|EEY11204.1| transcription elongation factor GreA [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310679|gb|EEY11863.1| transcription elongation factor GreA [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 179

 Score =  157 bits (396), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G +++++EL + +   RP+II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 22  MKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 81

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A++ID++ M+ + ++ FGATV LV  ++ ++  Y+IVGD EA+++ GL+
Sbjct: 82  RIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEEVTYRIVGDDEANIKEGLI 141

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D +S+  PGG+  ++I+ V +I
Sbjct: 142 SVNSPIARGLIGKEVNDSVSITTPGGKVEFDIVGVEYI 179


>gi|329890723|ref|ZP_08269066.1| transcription elongation factor greA [Brevundimonas diminuta ATCC
           11568]
 gi|328846024|gb|EGF95588.1| transcription elongation factor greA [Brevundimonas diminuta ATCC
           11568]
          Length = 157

 Score =  157 bits (396), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 84/156 (53%), Positives = 123/156 (78%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T++G+  +  +L+  +  ERP +I AI+EAR +GDLSENAEY AAKE Q   EG
Sbjct: 1   MEKVPMTAEGYRSLDDQLKQLKSVERPSVIAAIAEAREHGDLSENAEYHAAKERQGWIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +AE+E+ ++RA+VID+S +SGD++ FGATV+ V++++ ++  YQIVG+ EADV+ G +S
Sbjct: 61  SIAEIEDKLSRAQVIDVSKLSGDQVKFGATVTFVDEDTEEEGVYQIVGEHEADVKLGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SPIARALI KE+GD++ VN PGG K YEIL+V W
Sbjct: 121 IASPIARALISKEVGDVVEVNTPGGVKAYEILKVEW 156


>gi|301170078|emb|CBW29682.1| transcription elongation factor [Haemophilus influenzae 10810]
          Length = 158

 Score =  157 bits (396), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G +++++EL + +   RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A++ID++ M  + ++ FGATV LV  N+ ++  Y+IVGD EAD++SGL+
Sbjct: 61  RIQEIEAKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKEL D +++  PGG   ++I++V +I
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158


>gi|237815897|ref|ZP_04594894.1| transcription elongation factor GreA [Brucella abortus str. 2308 A]
 gi|237789195|gb|EEP63406.1| transcription elongation factor GreA [Brucella abortus str. 2308 A]
          Length = 203

 Score =  157 bits (396), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 101/157 (64%), Positives = 137/157 (87%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 47  MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 106

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 107 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 166

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK  GD I VNAPGG ++YEI+ + ++
Sbjct: 167 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 203


>gi|268592834|ref|ZP_06127055.1| transcription elongation factor GreA [Providencia rettgeri DSM
           1131]
 gi|291311620|gb|EFE52073.1| transcription elongation factor GreA [Providencia rettgeri DSM
           1131]
          Length = 158

 Score =  157 bits (396), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T  G DK+++EL + +   RP II +I+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVLGADKLREELEFLKSVRRPEIIASIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M  + R+ FGATV+++  ++ ++  Y+IVGD EAD++  L+
Sbjct: 61  RIQEIEGKLSHAQVIDVTKMVNNGRVIFGATVTVLNVDTDEELTYRIVGDDEADIKINLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKE+ D +S+  PGG+  +EIL+V +I
Sbjct: 121 SVNSPIARGLVGKEVDDAVSIKTPGGDVEFEILKVEYI 158


>gi|312795594|ref|YP_004028516.1| transcription elongation factor greA [Burkholderia rhizoxinica HKI
           454]
 gi|312167369|emb|CBW74372.1| Transcription elongation factor greA [Burkholderia rhizoxinica HKI
           454]
          Length = 179

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 85/157 (54%), Positives = 114/157 (72%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G D+++ EL+  +  ERP +I AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 22  MSTIPLTKRGADQLRDELQRLKSVERPSVIHAIAEARAQGDLSENAEYDAAKEKQAFIEG 81

Query: 62  RMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A++ID     +  R+ FGATV L + +SGDK  YQIVGD EAD++ GL+
Sbjct: 82  RIAELESKLSAAQIIDPKAVDADGRVVFGATVDLEDLDSGDKVTYQIVGDDEADLEHGLI 141

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+SSPIARALIGK  GD+ +V AP G + YEI+ V +
Sbjct: 142 SVSSPIARALIGKFEGDVAAVQAPSGVREYEIIAVRY 178


>gi|229845154|ref|ZP_04465289.1| transcription elongation factor GreA [Haemophilus influenzae
           6P18H1]
 gi|229811990|gb|EEP47684.1| transcription elongation factor GreA [Haemophilus influenzae
           6P18H1]
          Length = 158

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G +++++EL + +   RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A++ID++ M  + ++ FGATV LV  ++ ++  Y+IVGD EAD++SGL+
Sbjct: 61  RIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTDTDEEVTYRIVGDDEADIKSGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKEL D +++  PGG   ++I++V +I
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158


>gi|260913960|ref|ZP_05920434.1| transcription elongation factor GreA [Pasteurella dagmatis ATCC
           43325]
 gi|260632047|gb|EEX50224.1| transcription elongation factor GreA [Pasteurella dagmatis ATCC
           43325]
          Length = 158

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 118/158 (74%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G ++++QEL + +   RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGAEQLRQELDFLKNTRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++  +VID++ M  + ++ FGATV L+  ++ D+ +YQIVGD EA+++ GL+
Sbjct: 61  RIQEIEGKLSNCQVIDVTKMPNNGKVIFGATVVLLNVDTDDEVSYQIVGDDEANIKDGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D++++  PGG+  +EI++V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVAIQTPGGKVEFEIIEVNYV 158


>gi|148259921|ref|YP_001234048.1| transcription elongation factor GreA [Acidiphilium cryptum JF-5]
 gi|326403125|ref|YP_004283206.1| transcription elongation factor GreA [Acidiphilium multivorum
           AIU301]
 gi|166200647|sp|A5FWZ7|GREA_ACICJ RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|146401602|gb|ABQ30129.1| transcription elongation factor GreA [Acidiphilium cryptum JF-5]
 gi|325049986|dbj|BAJ80324.1| transcription elongation factor GreA [Acidiphilium multivorum
           AIU301]
          Length = 157

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 85/156 (54%), Positives = 120/156 (76%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T  G   ++ ELR  + EERP II+AI+EAR++GDLSENAEY +A+E Q+  EG
Sbjct: 1   MQKFPMTGPGLQNLEAELRHLKSEERPAIIRAIAEARSHGDLSENAEYHSARERQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AELE II+ AEVID ST+SGD + FGA V L+++ S  +  YQIVG  EAD+++G +S
Sbjct: 61  RIAELEEIISAAEVIDPSTLSGDTVKFGAHVELIDEESDKEVTYQIVGVHEADIKAGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ++SP+A++LIGK+ GD +SV APGG+++YEIL V +
Sbjct: 121 VTSPLAKSLIGKKPGDTVSVPAPGGDRSYEILAVRF 156


>gi|113461143|ref|YP_719211.1| transcription elongation factor GreA [Haemophilus somnus 129PT]
 gi|170717727|ref|YP_001784798.1| transcription elongation factor GreA [Haemophilus somnus 2336]
 gi|112823186|gb|ABI25275.1| transcription elongation factor GreA [Haemophilus somnus 129PT]
 gi|168825856|gb|ACA31227.1| transcription elongation factor GreA [Haemophilus somnus 2336]
          Length = 158

 Score =  156 bits (395), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 113/157 (71%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G +++++EL + +   RP IIKAISEAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGAEQLREELDFLKNVRRPEIIKAISEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +   ++ID++   +  ++ FGATV L+  ++ ++  Y+IVGD EAD++SGL+
Sbjct: 61  RIQEIEGKLANCQIIDVTKLPNNGKVIFGATVVLLNIDTDEEVTYRIVGDDEADIKSGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIAR LIGK++ D + +  PGG+  +EI++V +
Sbjct: 121 SVNSPIARGLIGKDVDDTVVITTPGGKVEFEIVEVEY 157


>gi|301156348|emb|CBW15819.1| transcription elongation factor [Haemophilus parainfluenzae T3T1]
          Length = 158

 Score =  156 bits (395), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G + +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGAELLREELDFLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +   +VID++   +  ++ FGATV LV  ++ ++  YQIVGD EAD++SGL+
Sbjct: 61  RIQEIEGKLANCQVIDVTKLPNNGKVIFGATVVLVNTDTDEEVTYQIVGDDEADIKSGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKEL D +++  PGG   +EI++V +I
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGTVEFEIIEVNYI 158


>gi|253999583|ref|YP_003051646.1| transcription elongation factor GreA [Methylovorus sp. SIP3-4]
 gi|313201618|ref|YP_004040276.1| transcription elongation factor grea [Methylovorus sp. MP688]
 gi|253986262|gb|ACT51119.1| transcription elongation factor GreA [Methylovorus sp. SIP3-4]
 gi|312440934|gb|ADQ85040.1| transcription elongation factor GreA [Methylovorus sp. MP688]
          Length = 158

 Score =  156 bits (395), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T  G + ++QEL+  +  +RP +I+AI+EARA GDLSENAEY AAKE Q+  EG
Sbjct: 1   MNQIPITVNGAELLKQELQRLRSVDRPNVIQAIAEARAQGDLSENAEYDAAKERQSFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E  ++ A VID  T  +  R  FGATV + + ++GD   YQIVGD EAD++ G +
Sbjct: 61  RIAEIEAKLSNAMVIDPKTLNAEGRCVFGATVEVEDLDNGDVSTYQIVGDDEADIKKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI SPIAR LIGK  GD+  V APGG ++YE+L V +I
Sbjct: 121 SIGSPIARGLIGKTAGDVAEVMAPGGLRSYEVLDVQYI 158


>gi|212709999|ref|ZP_03318127.1| hypothetical protein PROVALCAL_01050 [Providencia alcalifaciens DSM
           30120]
 gi|212687408|gb|EEB46936.1| hypothetical protein PROVALCAL_01050 [Providencia alcalifaciens DSM
           30120]
          Length = 158

 Score =  156 bits (395), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 118/158 (74%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T  G +K+++EL + +   RP II +I+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVFGANKLREELEYLKSVRRPEIIASIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++ ++VID++ M+ + R+ FGATVS++  ++ ++  Y+IVGD EAD++  L+
Sbjct: 61  RIQEIESKLSHSQVIDVTKMANNGRVIFGATVSVLNVDTDEELTYRIVGDDEADIKVNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKE+ D++++  PGG+  +EIL+V +I
Sbjct: 121 SVNSPIARGLVGKEVDDVVTIKTPGGDVEFEILKVEYI 158


>gi|186475640|ref|YP_001857110.1| transcription elongation factor GreA [Burkholderia phymatum STM815]
 gi|184192099|gb|ACC70064.1| transcription elongation factor GreA [Burkholderia phymatum STM815]
          Length = 158

 Score =  156 bits (395), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G D+++ EL+  +  ERP +I +I+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGADQLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ +  A++ID S   +  R+ F ATV L + +SGD   YQIVGD EAD++ GL+
Sbjct: 61  RIAEIESKLAAAQIIDPSALDADGRVVFAATVDLEDLDSGDSVTYQIVGDDEADLEHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIIAVRYI 158


>gi|91775133|ref|YP_544889.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
 gi|91709120|gb|ABE49048.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
          Length = 158

 Score =  156 bits (395), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 84/158 (53%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T KG + ++ EL+  +  +RP +I+AI+EARA GDLSENAEY AAKE Q+  EG
Sbjct: 1   MNQIPITVKGAELLKAELQRLRSVDRPAVIQAIAEARAQGDLSENAEYDAAKERQSFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E  ++ A +ID +T  +  R  FGATV + + +SG+   YQIVGD EAD++SG +
Sbjct: 61  RIAEIEAKLSNAMIIDPATLNAEGRCVFGATVEVEDLDSGEVSTYQIVGDDEADIKSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI SPIARALIGK  GD+  V APGG ++YEIL V +I
Sbjct: 121 SIGSPIARALIGKVEGDVAEVVAPGGLRSYEILSVKYI 158


>gi|332290209|ref|YP_004421061.1| transcription elongation factor GreA [Gallibacterium anatis UMN179]
 gi|330433105|gb|AEC18164.1| transcription elongation factor GreA [Gallibacterium anatis UMN179]
          Length = 158

 Score =  156 bits (394), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 114/157 (72%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G + +++EL + +   RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQQIPMTVRGANLLREELDYLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A++ID++ ++ + R+ FGATV LV   + D+  YQIVGD EAD++ GL+
Sbjct: 61  RIQEIEGKLSNAQIIDVTKITNNGRVIFGATVVLVNVETDDEVTYQIVGDDEADIKQGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIAR LIGKE+ D +++  PGG+  ++I+ V +
Sbjct: 121 SVNSPIARGLIGKEVDDNVTITTPGGKVEFDIISVEY 157


>gi|317493617|ref|ZP_07952038.1| transcription elongation factor GreA [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918560|gb|EFV39898.1| transcription elongation factor GreA [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 158

 Score =  156 bits (394), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T +G +K+++EL + +   RP+II  I++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTLRGAEKLREELEYLKGTRRPQIIADIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A VID++ +    R+ FG TVS+   ++ DK+ Y IVGD EAD +   +
Sbjct: 61  RIQEIEAKLSNANVIDVTKIPNTGRVIFGCTVSVENLDTEDKQTYSIVGDDEADFKQNRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE GDI+ +  PGGE  +EIL+V +I
Sbjct: 121 SVNSPIARGLIGKEQGDIVVIKTPGGEVEFEILKVEYI 158


>gi|307730495|ref|YP_003907719.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
 gi|307585030|gb|ADN58428.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
          Length = 158

 Score =  156 bits (394), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 86/158 (54%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G D ++ EL+  +  ERP +I +I+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ +  A+VID S   +  R+ FGATV L + +SG    YQIVGD EAD+  GL+
Sbjct: 61  RIAEIESKLAGAQVIDPSQVEADGRVVFGATVELEDLDSGASVKYQIVGDDEADIDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+ SV APGG + YEI+ V ++
Sbjct: 121 SISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158


>gi|260464000|ref|ZP_05812195.1| transcription elongation factor GreA [Mesorhizobium opportunistum
           WSM2075]
 gi|259030171|gb|EEW31452.1| transcription elongation factor GreA [Mesorhizobium opportunistum
           WSM2075]
          Length = 158

 Score =  156 bits (394), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 108/158 (68%), Positives = 139/158 (87%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M++K+P+T +GF  +++ELRWRQQEERPRII+AISEAR++GDLSENAEY AAKE Q+LNE
Sbjct: 1   MMNKVPMTGEGFASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE+ I RAEVID++ +SG+++ FGATV LV++++ +KK YQIVGDQEADV+SG +
Sbjct: 61  GRVNELEDYIARAEVIDVTKLSGEKVKFGATVVLVDEDTEEKKTYQIVGDQEADVKSGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGKE+GD I VNAPGG + YEI+QV +I
Sbjct: 121 SISSPIARALIGKEVGDAIEVNAPGGARGYEIVQVQFI 158


>gi|227113764|ref|ZP_03827420.1| transcription elongation factor GreA [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 158

 Score =  156 bits (394), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G +K+++EL   +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ M+   R+ FG+TV+++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIQDIEAKLSNAQVIDVTKMTANGRVIFGSTVTVMNLDNDEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++ +  PGG+  YEIL+V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVVIRTPGGDVEYEILKVEYL 158


>gi|33593266|ref|NP_880910.1| transcription elongation factor [Bordetella pertussis Tohama I]
 gi|33596678|ref|NP_884321.1| transcription elongation factor [Bordetella parapertussis 12822]
 gi|33600442|ref|NP_888002.1| transcription elongation factor [Bordetella bronchiseptica RB50]
 gi|29603208|emb|CAC79553.1| transcription elongation factor [Bordetella pertussis Tohama I]
 gi|33563641|emb|CAE42542.1| transcription elongation factor [Bordetella pertussis Tohama I]
 gi|33568041|emb|CAE31954.1| transcription elongation factor [Bordetella bronchiseptica RB50]
 gi|33573379|emb|CAE37363.1| transcription elongation factor [Bordetella parapertussis]
 gi|332382675|gb|AEE67522.1| transcription elongation factor [Bordetella pertussis CS]
          Length = 158

 Score =  156 bits (394), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 79/158 (50%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +++QQEL   +  ERP +I AI+EARA GDLSENAEY AA+E Q   EG
Sbjct: 1   MSAIPLTVRGAERLQQELHRLKTVERPAVISAIAEARAQGDLSENAEYDAARERQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R++ELE  ++ A +ID +   +  R  FGATV + + +SGD+  YQIVGD EAD++S L+
Sbjct: 61  RISELEGTLSNAHLIDPTALDAEGRAVFGATVEIEDLDSGDRLTYQIVGDVEADIKSNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSP+ARALIGK  GD++ V  P G + YE++ V ++
Sbjct: 121 SVSSPVARALIGKSEGDVVEVKVPAGVREYEVIGVRYL 158


>gi|258542082|ref|YP_003187515.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633160|dbj|BAH99135.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636217|dbj|BAI02186.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639272|dbj|BAI05234.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642326|dbj|BAI08281.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645381|dbj|BAI11329.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648436|dbj|BAI14377.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651489|dbj|BAI17423.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654480|dbj|BAI20407.1| transcription elongation factor GreA [Acetobacter pasteurianus IFO
           3283-12]
          Length = 157

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 86/157 (54%), Positives = 122/157 (77%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T KG  +++ ELR  + EERP +I+AI+EAR++GDLSENAEY AA+E Q+  EG
Sbjct: 1   MQKTPMTGKGLLQLEDELRKLKSEERPAVIRAIAEARSHGDLSENAEYHAARERQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +I+ AEVI+ +++SG ++ FGATV LV++++  +  YQIVG  EAD++   +S
Sbjct: 61  RILELEELISTAEVIEPTSLSGKQVKFGATVCLVDEDTDKEITYQIVGLHEADIKQHKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSP+A+ALIGKE GD +SV APGG++TYEIL V +I
Sbjct: 121 ISSPLAKALIGKEEGDTVSVPAPGGDRTYEILSVKFI 157


>gi|94676760|ref|YP_589063.1| transcription elongation factor GreA [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|123384107|sp|Q1LSK1|GREA_BAUCH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|94219910|gb|ABF14069.1| transcription elongation factor GreA [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 158

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T +G +++++EL + +   RP II+ I+EAR YGDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTLRGAEQLREELNYLKNVRRPEIIRNIAEAREYGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++ A++ID++      ++ FG TVS+   N  +++ Y+IVGD EA+ +  L+
Sbjct: 61  RIQEIESKLSHAQIIDVTKLFPSGKVVFGVTVSVQNLNINEEQTYRIVGDDEANFKHNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIAR LIGK+ GDI+ +  P GE  Y+IL++ ++
Sbjct: 121 SISSPIARGLIGKKKGDIVLIKTPRGEVKYQILKIEYL 158


>gi|118580935|ref|YP_902185.1| transcription elongation factor GreA [Pelobacter propionicus DSM
           2379]
 gi|229485902|sp|A1AS07|GREA_PELPD RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|118503645|gb|ABL00128.1| transcription elongation factor GreA [Pelobacter propionicus DSM
           2379]
          Length = 158

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 109/157 (69%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   IP+T + ++ +Q+EL+   + ERP++I+ I+EAR++GDLSENAEY AAK  Q   E
Sbjct: 1   MSHSIPLTKESYESLQEELKRLIRVERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL + + RA V+D+S M  D++ FG+TV+L +  S ++  Y+IVG+ EAD++ G +
Sbjct: 61  GRIQELNSKLARAYVVDLSNMKPDKVVFGSTVTLYDTASEEEITYKIVGEDEADIKLGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S +SP+ +ALIG +L D + V  P G K YEI+ + +
Sbjct: 121 SCTSPVGKALIGHKLDDSVKVKVPAGTKEYEIIDIKY 157


>gi|99078719|ref|YP_611977.1| transcription elongation factor GreA [Ruegeria sp. TM1040]
 gi|99035857|gb|ABF62715.1| transcription elongation factor GreA [Ruegeria sp. TM1040]
          Length = 156

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 79/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DKIP+T +GF  ++ EL+  +  ERP II+AI+EAR  GDLSENAEY +A+E Q+  EG
Sbjct: 1   MDKIPMTPQGFHALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +++ A+VID S +S   I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61  RIKELEGVLSLADVIDPSKLS-GAIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SPIARALIGKE GD + V  PGG+++YEIL + +
Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGDRSYEILDITY 155


>gi|251792645|ref|YP_003007371.1| transcription elongation factor GreA [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534038|gb|ACS97284.1| transcription elongation factor GreA [Aggregatibacter aphrophilus
           NJ8700]
          Length = 158

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G + +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQQIPMTVRGAELLRKELEYLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +   ++ID++ +  + ++ FGATV+LV  N+ D+  Y+IVGD EAD+++GL+
Sbjct: 61  RIQEIEGKLANCQIIDVTKIPNNGKVIFGATVTLVNTNTNDEVTYRIVGDDEADIKNGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++++  PGG   +EI++V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVNITTPGGVVEFEIIEVEYV 158


>gi|167587476|ref|ZP_02379864.1| transcription elongation factor GreA [Burkholderia ubonensis Bu]
          Length = 158

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G D+++ EL+  +  ERP +I AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ ++ A++ID S+  +  R+ F ATV L +  SGD   YQIVGD EAD+  GL+
Sbjct: 61  RIAEIESKLSAAQIIDPSSLDADGRVVFAATVELEDLESGDTVKYQIVGDDEADLDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158


>gi|217970148|ref|YP_002355382.1| transcription elongation factor GreA [Thauera sp. MZ1T]
 gi|217507475|gb|ACK54486.1| transcription elongation factor GreA [Thauera sp. MZ1T]
          Length = 158

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 109/158 (68%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T  G +K++ EL   +  ERP +I AI+EAR++GDLSENAEY+AAK+ Q   EG
Sbjct: 1   MNKTPLTVAGAEKLRTELHRLKTVERPNVIAAIAEARSHGDLSENAEYEAAKDRQGFIEG 60

Query: 62  RMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ +  A++ID +   +  R  FGATV L +  SG    YQIVGD EAD++   +
Sbjct: 61  RIMEVESKLANAQIIDPTLLDADGRCVFGATVELEDLESGQVVTYQIVGDDEADIKDNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GDI  V APGG + YEIL V ++
Sbjct: 121 SISSPIARALIGKYAGDIAEVQAPGGVREYEILDVRYV 158


>gi|330816264|ref|YP_004359969.1| Transcription elongation factor GreA [Burkholderia gladioli BSR3]
 gi|327368657|gb|AEA60013.1| Transcription elongation factor GreA [Burkholderia gladioli BSR3]
          Length = 158

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G ++++ EL+  +  ERP +I AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGAEQLRSELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ ++ A+VID S +  + R+ FGATV L +  S     YQIVGD EAD+  GL+
Sbjct: 61  RIAEIESKLSAAQVIDPSVIDAEGRVVFGATVELEDLGSSATVKYQIVGDDEADIDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V AP G + YEI+ V ++
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYV 158


>gi|325578454|ref|ZP_08148589.1| transcription elongation factor GreA [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160190|gb|EGC72319.1| transcription elongation factor GreA [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 158

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G + ++QEL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGAELLRQELDFLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ +   +VID++   +  ++ FGATV LV  ++ ++  YQIVGD EAD++SGL+
Sbjct: 61  RIQEIESKLANCQVIDVTKLPNNGKVIFGATVVLVNTDTDEEVTYQIVGDDEADIKSGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKEL D +++  PGG   +EI++V +I
Sbjct: 121 SVNSPIARGLVGKELDDTVNITTPGGAVEFEIIEVNYI 158


>gi|189425137|ref|YP_001952314.1| transcription elongation factor GreA [Geobacter lovleyi SZ]
 gi|238692107|sp|B3E3H5|GREA_GEOLS RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|189421396|gb|ACD95794.1| transcription elongation factor GreA [Geobacter lovleyi SZ]
          Length = 158

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 112/157 (71%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M + IP+T + ++ +Q+EL+   +EERP++I+ I+EAR++GDLSENAEY AAK  Q   E
Sbjct: 1   MSNNIPLTKESYEALQEELKRLIREERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL+  + RA V+D++ +  D++ FGATV+L +  S ++  Y+IVG+ EAD++ G +
Sbjct: 61  GRIQELQGKLARAHVVDLTGLKPDKVVFGATVTLYDTASEEEITYKIVGEDEADIKLGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S +SP+ +ALIG +L D + V  P G K YEI+++ +
Sbjct: 121 SCTSPVGKALIGHKLDDSVKVKVPAGTKEYEIIEIKY 157


>gi|152979122|ref|YP_001344751.1| transcription elongation factor GreA [Actinobacillus succinogenes
           130Z]
 gi|150840845|gb|ABR74816.1| transcription elongation factor GreA [Actinobacillus succinogenes
           130Z]
          Length = 158

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 117/158 (74%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G +++++EL + +   RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGAEQLREELDFLKNTRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++  ++ID++ +  + ++ FG+TV LV  ++ D+  YQIVGD EAD+++GL+
Sbjct: 61  RIQEIESKLSNGQIIDVTKIPNNGKVIFGSTVVLVNVDTDDEATYQIVGDDEADIKAGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D +++  PGG   ++I++V +I
Sbjct: 121 SVNSPIARGLIGKEVDDTVNIVTPGGTVEFDIIEVNYI 158


>gi|156935703|ref|YP_001439619.1| transcription elongation factor GreA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533957|gb|ABU78783.1| hypothetical protein ESA_03572 [Cronobacter sakazakii ATCC BAA-894]
          Length = 158

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQPIPMTLRGAEKLREELEFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VIDI+ M  + R+ FG+TV+++  ++ ++  Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVTVLNLDTDEELTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKEL D++++N PGG+  +EI++V ++
Sbjct: 121 SVNSPIARGLVGKELDDVVTINTPGGQVEFEIIKVDYL 158


>gi|95929152|ref|ZP_01311896.1| transcription elongation factor GreA [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134650|gb|EAT16305.1| transcription elongation factor GreA [Desulfuromonas acetoxidans
           DSM 684]
          Length = 158

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/157 (45%), Positives = 116/157 (73%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D +P+T + + ++Q+EL+ R + +RP++++ I+EAR++GDLSENAEY AAK+ Q   E
Sbjct: 1   MSDSVPMTPECYARLQEELKNRIKVDRPKVVQDIAEARSHGDLSENAEYDAAKDRQAHIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+AEL + + RAEVID  +++ D+I FGATV+L + +S ++  YQIVG+ EAD++ G +
Sbjct: 61  GRIAELNDKLARAEVIDPKSINTDKIVFGATVTLFDTDSDNEVVYQIVGEDEADIKQGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SP+ +ALIG  L D + +N P G + YE+ ++ +
Sbjct: 121 SVTSPVGKALIGHTLDDEVRINVPSGTRIYEVTEIEY 157


>gi|242240758|ref|YP_002988939.1| transcription elongation factor GreA [Dickeya dadantii Ech703]
 gi|242132815|gb|ACS87117.1| transcription elongation factor GreA [Dickeya dadantii Ech703]
          Length = 158

 Score =  155 bits (392), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G +K++QEL   +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQFPMTLRGAEKLRQELEHLKTVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ MS   R+ FGATV+++  +S +++ Y+IVGD EAD++  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTKMSATGRVIFGATVTVLNVDSDEEQTYRIVGDDEADIKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D+++++ PGG   YEIL+V ++
Sbjct: 121 SVNSPIARGLIGKETDDVVTISTPGGAVEYEILKVEYL 158


>gi|182677861|ref|YP_001832007.1| transcription elongation factor GreA [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|238691231|sp|B2IHJ7|GREA_BEII9 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|182633744|gb|ACB94518.1| transcription elongation factor GreA [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 157

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 96/156 (61%), Positives = 133/156 (85%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK P+T +G+  + +EL+ RQQEERPRII+AI+EAR++GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MDKFPMTPEGYHALDEELKRRQQEERPRIIQAIAEARSHGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AELE+ ++RAE+ID+S +SG+ + FGATV+LV++++ ++K YQIVG+ EADV++G VS
Sbjct: 61  RIAELEDKLSRAEIIDVSKLSGNTVMFGATVTLVDEDTEEEKIYQIVGESEADVKAGRVS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SP ARALIGK++GD + VN PGG K+YEIL V +
Sbjct: 121 ITSPTARALIGKKIGDSVEVNTPGGGKSYEILNVAF 156


>gi|260596192|ref|YP_003208763.1| transcription elongation factor GreA [Cronobacter turicensis z3032]
 gi|260215369|emb|CBA27383.1| Transcription elongation factor greA [Cronobacter turicensis z3032]
          Length = 158

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 117/158 (74%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQPIPMTLRGAEKLREELEYLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VIDI+ M  + R+ FG+TV+++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVTVLNLDTDEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKEL D++++N PGG+  +EI++V ++
Sbjct: 121 SVNSPIARGLVGKELDDVVTINTPGGQVEFEIIKVDYL 158


>gi|15889462|ref|NP_355143.1| transcription elongation factor GreA [Agrobacterium tumefaciens
           str. C58]
 gi|25452989|sp|Q8UDE5|GREA_AGRT5 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|15157330|gb|AAK87928.1| transcription elongation facto [Agrobacterium tumefaciens str. C58]
          Length = 158

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 110/157 (70%), Positives = 135/157 (85%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T  GF K+Q+ELR+RQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVEKVPMTQGGFVKLQEELRFRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAEVID+S MSG +I FGATV L++++S ++K YQIVGDQEADV++G +
Sbjct: 61  GRITELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDSDEEKTYQIVGDQEADVKAGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSPIARALIGKE+GD I VNAPGG K YEIL V W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKGYEILAVQW 157


>gi|329123413|ref|ZP_08251977.1| transcription elongation factor GreA [Haemophilus aegyptius ATCC
           11116]
 gi|327470995|gb|EGF16450.1| transcription elongation factor GreA [Haemophilus aegyptius ATCC
           11116]
          Length = 158

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G +++++EL + +   RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A++ID++ M  + ++ FGATV LV  N+ ++  Y IVGD EAD++SGL+
Sbjct: 61  RIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYGIVGDDEADIKSGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKEL D +++  PGG   ++I++V +I
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 158


>gi|167855522|ref|ZP_02478284.1| transcription elongation factor GreA [Haemophilus parasuis 29755]
 gi|219871300|ref|YP_002475675.1| transcription elongation factor GreA [Haemophilus parasuis SH0165]
 gi|167853323|gb|EDS24575.1| transcription elongation factor GreA [Haemophilus parasuis 29755]
 gi|219691504|gb|ACL32727.1| transcription elongation factor GreA [Haemophilus parasuis SH0165]
          Length = 158

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G +++++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGAEQLREELDFLKNVRRPEIISAITEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ +  A++ID+  M    ++ FG+TV+L+  N+ +   Y+IVGD EA+++ GL+
Sbjct: 61  RIKEIESKLGNAQIIDVKNMINTGKVIFGSTVTLLNVNTDECVTYRIVGDDEANIKDGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKE+ D + +  PGG   ++I++V +I
Sbjct: 121 SVNSPIARGLVGKEIDDNVHIQTPGGNVEFDIIKVEYI 158


>gi|330993911|ref|ZP_08317841.1| Transcription elongation factor greA [Gluconacetobacter sp. SXCC-1]
 gi|329758857|gb|EGG75371.1| Transcription elongation factor greA [Gluconacetobacter sp. SXCC-1]
          Length = 157

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/156 (55%), Positives = 123/156 (78%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T  G  +++ ELR  + EERP II+AI+EAR++GDLSENAEY AA+E Q+  EG
Sbjct: 1   MQKFPMTGPGLQRLEDELRKLKSEERPAIIRAIAEARSHGDLSENAEYHAARERQSFTEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I++ AEVID +++SGD++ FGA V LV++ +  + +YQIVG  EAD++ GL+S
Sbjct: 61  RIQELEEIVSSAEVIDPASLSGDQVKFGARVKLVDEETDREASYQIVGVYEADIKQGLLS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ISSP+A++LIGK +GD +SV APGG++TYEIL+V +
Sbjct: 121 ISSPLAKSLIGKSIGDTVSVPAPGGDRTYEILEVTY 156


>gi|238020364|ref|ZP_04600790.1| hypothetical protein GCWU000324_00244 [Kingella oralis ATCC 51147]
 gi|237867344|gb|EEP68350.1| hypothetical protein GCWU000324_00244 [Kingella oralis ATCC 51147]
          Length = 158

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T  G +K++ EL+  +   RP +I AI+EAR++GDLSENAEY+AAK+ Q   EG
Sbjct: 1   MQKIPLTVAGAEKLKAELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKDRQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A++ID   +  + +I FGATV++ +  + ++  YQIVGD EAD++ G +
Sbjct: 61  RIAELESKLSHAQIIDPKEIHAEGKIVFGATVTVSDLETDEEATYQIVGDDEADIKIGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARA+IGKE GD+  V AP G + Y+IL V +I
Sbjct: 121 SVNSPIARAMIGKEEGDVAEVQAPSGVREYDILNVQYI 158


>gi|323526828|ref|YP_004228981.1| transcription elongation factor GreA [Burkholderia sp. CCGE1001]
 gi|323383830|gb|ADX55921.1| transcription elongation factor GreA [Burkholderia sp. CCGE1001]
          Length = 158

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/158 (54%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G D ++ EL+  +  ERP +I +I+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ +  A+VID S   +  R+ FGATV L +  SG    YQIVGD EAD+  GL+
Sbjct: 61  RIAEIESKLAGAQVIDPSQVEADGRVVFGATVELEDLESGASVKYQIVGDDEADIDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+ SV APGG + YEI+ V ++
Sbjct: 121 SISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158


>gi|107022368|ref|YP_620695.1| transcription elongation factor GreA [Burkholderia cenocepacia AU
           1054]
 gi|116689315|ref|YP_834938.1| transcription elongation factor GreA [Burkholderia cenocepacia
           HI2424]
 gi|170732614|ref|YP_001764561.1| transcription elongation factor GreA [Burkholderia cenocepacia
           MC0-3]
 gi|206559640|ref|YP_002230401.1| transcription elongation factor GreA [Burkholderia cenocepacia
           J2315]
 gi|254245763|ref|ZP_04939084.1| Prokaryotic transcription elongation factor GreA [Burkholderia
           cenocepacia PC184]
 gi|254252705|ref|ZP_04946023.1| Prokaryotic transcription elongation factor GreA [Burkholderia
           dolosa AUO158]
 gi|105892557|gb|ABF75722.1| transcription elongation factor GreA [Burkholderia cenocepacia AU
           1054]
 gi|116647404|gb|ABK08045.1| transcription elongation factor GreA [Burkholderia cenocepacia
           HI2424]
 gi|124870539|gb|EAY62255.1| Prokaryotic transcription elongation factor GreA [Burkholderia
           cenocepacia PC184]
 gi|124895314|gb|EAY69194.1| Prokaryotic transcription elongation factor GreA [Burkholderia
           dolosa AUO158]
 gi|169815856|gb|ACA90439.1| transcription elongation factor GreA [Burkholderia cenocepacia
           MC0-3]
 gi|198035678|emb|CAR51565.1| transcription elongation factor [Burkholderia cenocepacia J2315]
 gi|325525887|gb|EGD03598.1| transcription elongation factor GreA [Burkholderia sp. TJI49]
          Length = 158

 Score =  155 bits (392), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G ++++ EL+  +  ERP +I AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A++ID +   +  R+ F ATV L +  SGD   YQIVGD EAD+  GL+
Sbjct: 61  RIAELESKLSAAQIIDPTVLDADGRVVFAATVELEDLESGDTVKYQIVGDDEADIDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158


>gi|295097667|emb|CBK86757.1| transcription elongation factor GreA [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 158

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VIDI+ M  + R+ FG+TVS++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDNDEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++++  PGGE  YEI++V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVTIRTPGGEVEYEIIKVEYL 158


>gi|226941818|ref|YP_002796892.1| GreA [Laribacter hongkongensis HLHK9]
 gi|226716745|gb|ACO75883.1| GreA [Laribacter hongkongensis HLHK9]
          Length = 158

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T  G ++++ EL+  +   RP +I AI+EAR++GDLSENAEY AAKE Q   EG
Sbjct: 1   MIKVPLTRFGAEQLKAELQQLKSVARPEVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE  ++ A+VID +   +  RI FGATV L++  + D+  YQIVGD EAD++ G V
Sbjct: 61  RIAELEGKLSNAQVIDPADLDADGRIVFGATVELLDLETEDEVGYQIVGDDEADIKLGKV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIGKE GD + V APGG + YE+L V +I
Sbjct: 121 SVNSPIARALIGKEAGDTVEVMAPGGIREYEVLDVKYI 158


>gi|145633182|ref|ZP_01788913.1| transcription elongation factor GreA [Haemophilus influenzae 3655]
 gi|144986028|gb|EDJ92618.1| transcription elongation factor GreA [Haemophilus influenzae 3655]
          Length = 157

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/157 (47%), Positives = 115/157 (73%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G +++++EL + +   RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A++ID++ M  + ++ FGATV LV  N+ ++  Y+IVGD EAD++SGL+
Sbjct: 61  RIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIKSGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIAR LIGKEL D +++  PGG   ++I++V +
Sbjct: 121 SVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNY 157


>gi|56478163|ref|YP_159752.1| transcription elongation factor [Aromatoleum aromaticum EbN1]
 gi|56314206|emb|CAI08851.1| transcription elongation factor [Aromatoleum aromaticum EbN1]
          Length = 184

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 81/159 (50%), Positives = 109/159 (68%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++ K P+T  G +K++ EL   +  ERP +I AI+EAR++GDLSENAEY AAKE Q   E
Sbjct: 26  IMIKTPLTVAGAEKLRNELHRLKTVERPSVIAAIAEARSHGDLSENAEYDAAKERQGFVE 85

Query: 61  GRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+ E+E  I+ A++ID     +  R  FGATV L + ++G    YQIVGD EAD++   
Sbjct: 86  GRIKEIEGKISSAQIIDPKLLDADGRCVFGATVELEDMDTGQTVMYQIVGDDEADLKENK 145

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SISSPIARALIGK  GDI  V+APGG + YEI+ V ++
Sbjct: 146 ISISSPIARALIGKFAGDIAEVHAPGGVREYEIIDVRYV 184


>gi|261820118|ref|YP_003258224.1| transcription elongation factor GreA [Pectobacterium wasabiae
           WPP163]
 gi|261604131|gb|ACX86617.1| transcription elongation factor GreA [Pectobacterium wasabiae
           WPP163]
          Length = 159

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/159 (44%), Positives = 113/159 (71%), Gaps = 2/159 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G +K+++EL   +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTM--SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           R+ ++E  ++ A+VID++ M  +  R+ FGATV+++  ++ +++ Y+IVGD EAD +  L
Sbjct: 61  RIQDIEAKLSNAQVIDVTKMAANNGRVIFGATVTVMNLDNDEEQTYRIVGDDEADFKQNL 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S++SPIAR LIGKE  D++ +  PGG+  YE+L+V ++
Sbjct: 121 ISVNSPIARGLIGKEQDDVVVIRTPGGDVEYEVLKVEYL 159


>gi|171463553|ref|YP_001797666.1| transcription elongation factor GreA [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193091|gb|ACB44052.1| transcription elongation factor GreA [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 158

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 108/158 (68%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G + +++EL   +  ERP +I AISEARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPITKRGAELLKEELHRLKHVERPAVINAISEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ELE  ++ A++ID  S     R+ FGATV L +   G +  YQIVGD EAD+ S  +
Sbjct: 61  RIQELEGKLSAAQIIDPASLDITGRVVFGATVDLKDLEDGTRLTYQIVGDDEADIASNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALI KE GD+++V APGG +  EIL V ++
Sbjct: 121 SISSPIARALISKEEGDVVAVQAPGGNREVEILAVRYV 158


>gi|16762061|ref|NP_457678.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16766595|ref|NP_462210.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29143550|ref|NP_806892.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56415228|ref|YP_152303.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62181807|ref|YP_218224.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161616306|ref|YP_001590271.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167552055|ref|ZP_02345808.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167995305|ref|ZP_02576395.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231907|ref|ZP_02656965.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237998|ref|ZP_02663056.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168243132|ref|ZP_02668064.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168262691|ref|ZP_02684664.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168463479|ref|ZP_02697396.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168819635|ref|ZP_02831635.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194442444|ref|YP_002042555.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194451049|ref|YP_002047327.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472290|ref|ZP_03078274.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194737942|ref|YP_002116247.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197248717|ref|YP_002148223.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262177|ref|ZP_03162251.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197364158|ref|YP_002143795.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198244973|ref|YP_002217271.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200388684|ref|ZP_03215296.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204931178|ref|ZP_03221972.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354200|ref|YP_002228001.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207858547|ref|YP_002245198.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213425423|ref|ZP_03358173.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213646994|ref|ZP_03377047.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|224585094|ref|YP_002638893.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238910092|ref|ZP_04653929.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289825810|ref|ZP_06544978.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|54037219|sp|P64282|GREA_SALTI RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|54041329|sp|P64281|GREA_SALTY RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|25321438|pir||AB0903 transcription elongation factor STY3477 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16421857|gb|AAL22169.1| transcription elongation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16504364|emb|CAD07816.1| transcription elongation factor [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139185|gb|AAO70752.1| transcription elongation factor [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56129485|gb|AAV78991.1| transcription elongation factor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62129440|gb|AAX67143.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|161365670|gb|ABX69438.1| hypothetical protein SPAB_04114 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194401107|gb|ACF61329.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194409353|gb|ACF69572.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458654|gb|EDX47493.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194713444|gb|ACF92665.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195633532|gb|EDX51946.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197095635|emb|CAR61203.1| transcription elongation factor [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197212420|gb|ACH49817.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240432|gb|EDY23052.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289064|gb|EDY28433.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197939489|gb|ACH76822.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605782|gb|EDZ04327.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204319945|gb|EDZ05151.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273981|emb|CAR38987.1| transcription elongation factor [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205323254|gb|EDZ11093.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327000|gb|EDZ13764.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333717|gb|EDZ20481.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205337869|gb|EDZ24633.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343382|gb|EDZ30146.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205348488|gb|EDZ35119.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710350|emb|CAR34708.1| transcription elongation factor [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469622|gb|ACN47452.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261248464|emb|CBG26301.1| transcription elongation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995496|gb|ACY90381.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159848|emb|CBW19367.1| transcription elongation factor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914323|dbj|BAJ38297.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087743|emb|CBY97507.1| Transcription elongation factor greA Transcript cleavage factor
           greA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321225982|gb|EFX51036.1| Transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322615302|gb|EFY12223.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618339|gb|EFY15230.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622856|gb|EFY19700.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626822|gb|EFY23619.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631391|gb|EFY28151.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635342|gb|EFY32056.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643341|gb|EFY39905.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647087|gb|EFY43588.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322648890|gb|EFY45335.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655082|gb|EFY51393.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322657685|gb|EFY53953.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664181|gb|EFY60379.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667464|gb|EFY63626.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674712|gb|EFY70804.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675655|gb|EFY71728.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682291|gb|EFY78314.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684894|gb|EFY80892.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716294|gb|EFZ07865.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323131658|gb|ADX19088.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323195901|gb|EFZ81072.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199018|gb|EFZ84115.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204282|gb|EFZ89291.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207629|gb|EFZ92576.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211318|gb|EFZ96162.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214740|gb|EFZ99489.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221220|gb|EGA05646.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224039|gb|EGA08332.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230312|gb|EGA14431.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233288|gb|EGA17382.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323239325|gb|EGA23375.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242424|gb|EGA26450.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246934|gb|EGA30900.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254133|gb|EGA37953.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255250|gb|EGA39027.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262713|gb|EGA46269.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264023|gb|EGA47531.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269409|gb|EGA52864.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326625049|gb|EGE31394.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629321|gb|EGE35664.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332990156|gb|AEF09139.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 158

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ M  + R+ FGATV+++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++ +  PGG+  YE+L+V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 158


>gi|220924293|ref|YP_002499595.1| transcription elongation factor GreA [Methylobacterium nodulans ORS
           2060]
 gi|254799562|sp|B8IBN8|GREA_METNO RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|219948900|gb|ACL59292.1| transcription elongation factor GreA [Methylobacterium nodulans ORS
           2060]
          Length = 158

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 94/156 (60%), Positives = 132/156 (84%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +GF  ++QEL+ RQQ ERPRII+AI+EARA GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MEKVPITIRGFAALEQELKHRQQVERPRIIQAIAEARALGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE++I+RAEVID++ +SG ++ FGATV L+++++ ++K YQIVG+ EADV+SG VS
Sbjct: 61  RVLELESLISRAEVIDVAKLSGSKVKFGATVQLIDEDTEEEKTYQIVGEPEADVRSGRVS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SP+ARALIGK +GD + V+ PGG K+YEI+ + +
Sbjct: 121 ITSPVARALIGKGVGDTVEVSTPGGGKSYEIVGISF 156


>gi|296158199|ref|ZP_06841031.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
 gi|295891535|gb|EFG71321.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
          Length = 158

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  +P+T +G + ++ EL+  +  ERP +I +I+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTVPLTKRGAEMLRDELQRLKSVERPSVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ +  A+VID  +  +  R+ FGATV L + NSG    YQIVGD EAD+  GL+
Sbjct: 61  RIAEIESKLAGAQVIDPAAVEADGRVVFGATVELEDLNSGASVKYQIVGDDEADIDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+ SV APGG + YEI+ V ++
Sbjct: 121 SISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158


>gi|254361960|ref|ZP_04978091.1| transcription elongation factor GreA [Mannheimia haemolytica
           PHL213]
 gi|153093507|gb|EDN74487.1| transcription elongation factor GreA [Mannheimia haemolytica
           PHL213]
          Length = 158

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G +++++EL + +   RP+II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGAEQLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A++ID++ M+ + ++ FGATV LV  ++ ++  Y+IVGD EA+++ GL+
Sbjct: 61  RIQEIEGKLGNAQIIDVTKMANNGKVIFGATVQLVNADTDEEVTYRIVGDDEANIKEGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D +S+  PGG+  ++I+ V +I
Sbjct: 121 SVNSPIARGLIGKEVDDSVSITTPGGKVEFDIVGVEYI 158


>gi|261867705|ref|YP_003255627.1| transcription elongation factor GreA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|293392110|ref|ZP_06636444.1| transcription elongation factor GreA [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|261413037|gb|ACX82408.1| transcription elongation factor GreA [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|290952644|gb|EFE02763.1| transcription elongation factor GreA [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 158

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 118/158 (74%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G   +++EL + + E RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQQIPMTVRGAQLLREELDYLKNERRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  ++VID++ +  + ++ FGATV L+  N+ ++ +Y+IVGD EAD+++GL+
Sbjct: 61  RIQEIEGKLANSQVIDVTKIPNNGKVIFGATVVLLNTNTDEEVSYRIVGDDEADIKNGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKE+ D+++++ PGG   +EI++V ++
Sbjct: 121 SVNSPIARGLVGKEVDDVVNISTPGGTVEFEIIEVDYV 158


>gi|171318235|ref|ZP_02907398.1| transcription elongation factor GreA [Burkholderia ambifaria MEX-5]
 gi|172060237|ref|YP_001807889.1| transcription elongation factor GreA [Burkholderia ambifaria
           MC40-6]
 gi|171096579|gb|EDT41473.1| transcription elongation factor GreA [Burkholderia ambifaria MEX-5]
 gi|171992754|gb|ACB63673.1| transcription elongation factor GreA [Burkholderia ambifaria
           MC40-6]
          Length = 158

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G ++++ EL+  +  ERP +I AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A+VID +   +  R+ F +TV L +  SGD   YQIVGD EAD+  GL+
Sbjct: 61  RIAELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158


>gi|22124593|ref|NP_668016.1| transcription elongation factor GreA [Yersinia pestis KIM 10]
 gi|45440432|ref|NP_991971.1| transcription elongation factor GreA [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51594823|ref|YP_069014.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
           IP 32953]
 gi|108806053|ref|YP_649969.1| transcription elongation factor GreA [Yersinia pestis Antiqua]
 gi|108813409|ref|YP_649176.1| transcription elongation factor GreA [Yersinia pestis Nepal516]
 gi|145600801|ref|YP_001164877.1| transcription elongation factor GreA [Yersinia pestis Pestoides F]
 gi|153947048|ref|YP_001402559.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
           IP 31758]
 gi|153997282|ref|ZP_02022382.1| transcription elongation factor [Yersinia pestis CA88-4125]
 gi|162421747|ref|YP_001608277.1| transcription elongation factor GreA [Yersinia pestis Angola]
 gi|165928150|ref|ZP_02223982.1| transcription elongation factor GreA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937569|ref|ZP_02226132.1| transcription elongation factor GreA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011327|ref|ZP_02232225.1| transcription elongation factor GreA [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214002|ref|ZP_02240037.1| transcription elongation factor GreA [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401279|ref|ZP_02306779.1| transcription elongation factor GreA [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420462|ref|ZP_02312215.1| transcription elongation factor GreA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423351|ref|ZP_02315104.1| transcription elongation factor GreA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470193|ref|ZP_02334897.1| transcription elongation factor GreA [Yersinia pestis FV-1]
 gi|170025954|ref|YP_001722459.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
           YPIII]
 gi|186893832|ref|YP_001870944.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930519|ref|YP_002348394.1| transcription elongation factor GreA [Yersinia pestis CO92]
 gi|229839158|ref|ZP_04459317.1| transcription elongation factor [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229896647|ref|ZP_04511814.1| transcription elongation factor [Yersinia pestis Pestoides A]
 gi|229899722|ref|ZP_04514863.1| transcription elongation factor [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229903884|ref|ZP_04518997.1| transcription elongation factor [Yersinia pestis Nepal516]
 gi|270489127|ref|ZP_06206201.1| transcription elongation factor GreA [Yersinia pestis KIM D27]
 gi|25452996|sp|Q8ZBB3|GREA_YERPE RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|238687311|sp|A9R594|GREA_YERPG RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|21957396|gb|AAM84267.1|AE013670_4 transcription elongation factor [Yersinia pestis KIM 10]
 gi|45435289|gb|AAS60848.1| transcription elongation factor [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51588105|emb|CAH19711.1| transcription elongation factor [Yersinia pseudotuberculosis IP
           32953]
 gi|108777057|gb|ABG19576.1| transcription elongation factor GreA [Yersinia pestis Nepal516]
 gi|108777966|gb|ABG12024.1| transcription elongation factor GreA [Yersinia pestis Antiqua]
 gi|115349130|emb|CAL22093.1| transcription elongation factor [Yersinia pestis CO92]
 gi|145212497|gb|ABP41904.1| transcription elongation factor GreA [Yersinia pestis Pestoides F]
 gi|149288919|gb|EDM38999.1| transcription elongation factor [Yersinia pestis CA88-4125]
 gi|152958543|gb|ABS46004.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
           IP 31758]
 gi|162354562|gb|ABX88510.1| transcription elongation factor GreA [Yersinia pestis Angola]
 gi|165914674|gb|EDR33288.1| transcription elongation factor GreA [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919837|gb|EDR37138.1| transcription elongation factor GreA [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989711|gb|EDR42012.1| transcription elongation factor GreA [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204797|gb|EDR49277.1| transcription elongation factor GreA [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961268|gb|EDR57289.1| transcription elongation factor GreA [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049304|gb|EDR60712.1| transcription elongation factor GreA [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057521|gb|EDR67267.1| transcription elongation factor GreA [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752488|gb|ACA70006.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
           YPIII]
 gi|186696858|gb|ACC87487.1| transcription elongation factor GreA [Yersinia pseudotuberculosis
           PB1/+]
 gi|229679654|gb|EEO75757.1| transcription elongation factor [Yersinia pestis Nepal516]
 gi|229687214|gb|EEO79289.1| transcription elongation factor [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229695524|gb|EEO85571.1| transcription elongation factor [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700425|gb|EEO88457.1| transcription elongation factor [Yersinia pestis Pestoides A]
 gi|262363429|gb|ACY60150.1| transcription elongation factor GreA [Yersinia pestis D106004]
 gi|262367196|gb|ACY63753.1| transcription elongation factor GreA [Yersinia pestis D182038]
 gi|270337631|gb|EFA48408.1| transcription elongation factor GreA [Yersinia pestis KIM D27]
 gi|320013709|gb|ADV97280.1| transcription elongation factor [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 158

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G DK+++EL + +   RP+II  I++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ M  + R+ FGATV ++  N+ +++NY+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNLNTEEEQNYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D++ ++ PGGE  YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIHTPGGEVEYEILSVEYV 158


>gi|296445401|ref|ZP_06887359.1| GreA/GreB family elongation factor [Methylosinus trichosporium
           OB3b]
 gi|296257162|gb|EFH04231.1| GreA/GreB family elongation factor [Methylosinus trichosporium
           OB3b]
          Length = 157

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 97/157 (61%), Positives = 131/157 (83%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK+P+T+ G+  +  ELR RQQ ERPRII+AISEAR++GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MDKVPMTAAGYAALDTELRHRQQTERPRIIQAISEARSHGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+A+LE+ ++RAEVID+S +SG  I FGATV+LV++++ ++K YQIVG+ EAD ++G VS
Sbjct: 61  RIADLEDKLSRAEVIDVSKLSGSTIKFGATVTLVDEDTEEEKAYQIVGEPEADAKNGRVS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I+SPIARALIGK+ GD + V  PGG K+YEIL+V ++
Sbjct: 121 IASPIARALIGKKAGDTVEVKTPGGGKSYEILKVAFV 157


>gi|254293474|ref|YP_003059497.1| transcription elongation factor GreA [Hirschia baltica ATCC 49814]
 gi|254042005|gb|ACT58800.1| transcription elongation factor GreA [Hirschia baltica ATCC 49814]
          Length = 157

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/157 (52%), Positives = 120/157 (76%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T++G   ++ EL+  +   RP +I+AI+ AR +GDLSENAEY AAKE Q+  EG
Sbjct: 1   MQRIPMTAQGHQALEDELKHLKTVARPEVIQAIAVAREHGDLSENAEYHAAKESQSHIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ EL++ + RA+VID S +SGD I FGATV++V++++ ++  Y+IVG+ EA++  G +S
Sbjct: 61  RIIELDSKLARAQVIDTSKLSGDNIKFGATVTVVDEDTEEEATYKIVGEDEANIADGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SSP+ARA+IGKE GDI  V+APGG KTYEIL V WI
Sbjct: 121 LSSPLARAMIGKEEGDIAEVSAPGGAKTYEILDVKWI 157


>gi|329114165|ref|ZP_08242927.1| Transcription elongation factor GreA [Acetobacter pomorum DM001]
 gi|326696241|gb|EGE47920.1| Transcription elongation factor GreA [Acetobacter pomorum DM001]
          Length = 157

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 86/157 (54%), Positives = 122/157 (77%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T KG  +++ ELR  + EERP +I+AI+EAR++GDLSENAEY AA+E Q+  EG
Sbjct: 1   MQKTPMTGKGLLQLEDELRKLKAEERPAVIRAIAEARSHGDLSENAEYHAARERQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +I+ AEVI+ +++SG ++ FGATV LV++++  +  YQIVG  EAD++   +S
Sbjct: 61  RILELEELISTAEVIEPTSLSGKQVKFGATVCLVDEDTDKEITYQIVGLHEADIKQHRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSP+A+ALIGKE GD +SV APGG++TYEIL V +I
Sbjct: 121 ISSPLAKALIGKEEGDTVSVPAPGGDRTYEILSVKFI 157


>gi|329118200|ref|ZP_08246910.1| transcription elongation factor GreA [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465621|gb|EGF11896.1| transcription elongation factor GreA [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 207

 Score =  154 bits (390), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/158 (48%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++ EL+  +   RP +I AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 50  MKKIPLTIRGAELLKSELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKERQGFIEG 109

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ ++ A VI+ + +  + ++ FGAT+ L + +SG+   YQIVG+ EAD+++G +
Sbjct: 110 RIAEIEHKLSHAHVINPAEIHAEGKVVFGATLDLEDLDSGEHVRYQIVGEDEADIKAGKI 169

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIARALIGKE GD+  V APGG + YEI+ V ++
Sbjct: 170 SVGSPIARALIGKEEGDVAEVQAPGGVREYEIVAVEYV 207


>gi|240949666|ref|ZP_04754001.1| transcription elongation factor GreA [Actinobacillus minor NM305]
 gi|240295924|gb|EER46600.1| transcription elongation factor GreA [Actinobacillus minor NM305]
          Length = 158

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G + +++EL + +   RP+II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGAELLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A++ID++ M  + ++ FGATVSLV  ++ ++  Y+IVGD EA+++ GL+
Sbjct: 61  RIQEIEGKLANAQIIDVTKMQNNGKVIFGATVSLVNVDTDEEVTYRIVGDDEANIKEGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKE+ D +S+  PGG+  ++I+ V +I
Sbjct: 121 SVNSPIARGLVGKEVDDSVSITTPGGKVEFDIVDVEYI 158


>gi|16127080|ref|NP_421644.1| transcription elongation factor GreA [Caulobacter crescentus CB15]
 gi|221235877|ref|YP_002518314.1| transcription elongation factor GreA [Caulobacter crescentus
           NA1000]
 gi|25453007|sp|Q9A4I3|GREA_CAUCR RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799552|sp|B8H1V7|GREA_CAUCN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|13424460|gb|AAK24812.1| transcription elongation factor GreA [Caulobacter crescentus CB15]
 gi|220965050|gb|ACL96406.1| transcription elongation factor greA [Caulobacter crescentus
           NA1000]
          Length = 157

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 84/157 (53%), Positives = 126/157 (80%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T  G+  + +EL+  +  ERP +I AI+EAR++GDLSENAEY AAKE Q   EG
Sbjct: 1   MEKVPMTVAGYQTLDEELKRLKTVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++AE+E+ I RA+VID++ +SG ++ FGATVS+V++++ ++  YQIVGD EADV+SG +S
Sbjct: 61  QIAEIEDKIARAQVIDVTKLSGKQVKFGATVSVVDEDTEEEARYQIVGDHEADVKSGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SSP++RA+IGKE+G+++ VN PGG K YEIL+V W+
Sbjct: 121 LSSPLSRAMIGKEVGEVVEVNTPGGVKAYEILKVEWL 157


>gi|296104892|ref|YP_003615038.1| transcription elongation factor GreA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059351|gb|ADF64089.1| transcription elongation factor GreA [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 158

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VIDI+ M  + R+ FG+TVS++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++++  PGGE  YEI++V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVTIRTPGGEVEYEIIKVEYL 158


>gi|56695227|ref|YP_165575.1| transcription elongation factor GreA [Ruegeria pomeroyi DSS-3]
 gi|81350946|sp|Q5LXA4|GREA_SILPO RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|56676964|gb|AAV93630.1| transcription elongation factor GreA [Ruegeria pomeroyi DSS-3]
          Length = 156

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/156 (51%), Positives = 119/156 (76%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  GF  ++ EL+  +  ERP IIKAI+EAR +GDLSENAEY +A+E Q+  EG
Sbjct: 1   MEKIPMTPSGFAALEAELKQLKSVERPAIIKAIAEAREHGDLSENAEYHSAREKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +++ A+VID + +S   I FGA V+LV++++ ++K +QIVG+ EA+++ GL++
Sbjct: 61  RIKELEGVLSLADVIDPTKLS-GAIKFGARVTLVDEDTDEEKTWQIVGEHEANIEKGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SPIARALIGK+ GD + V  PGG+K+YEIL + +
Sbjct: 120 IKSPIARALIGKDEGDSVEVKTPGGQKSYEILSIEY 155


>gi|260869932|ref|YP_003236334.1| transcription elongation factor GreA [Escherichia coli O111:H- str.
           11128]
 gi|257766288|dbj|BAI37783.1| transcription elongation factor GreA [Escherichia coli O111:H- str.
           11128]
 gi|323178643|gb|EFZ64219.1| transcription elongation factor GreA domain protein [Escherichia
           coli 1180]
          Length = 158

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ M  + R+ FGATV+++  +S  ++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDKEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++ +  PGGE  +E+++V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158


>gi|187924842|ref|YP_001896484.1| transcription elongation factor GreA [Burkholderia phytofirmans
           PsJN]
 gi|187716036|gb|ACD17260.1| transcription elongation factor GreA [Burkholderia phytofirmans
           PsJN]
          Length = 158

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  +P+T +G + ++ EL+  +  ERP +I +I+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTVPLTKRGAEMLRDELQRLKSVERPSVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ +  A+VID  +  +  R+ FGATV L + +SG    YQIVGD EAD+  GL+
Sbjct: 61  RIAEIESKLAGAQVIDPAAVEADGRVVFGATVELEDLDSGASVKYQIVGDDEADIDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+ SV APGG + YEI+ V ++
Sbjct: 121 SISSPIARALIGKSEGDVASVQAPGGVREYEIIAVSYV 158


>gi|253686964|ref|YP_003016154.1| transcription elongation factor GreA [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753542|gb|ACT11618.1| transcription elongation factor GreA [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 158

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G +K+++EL   +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ M+   R+ FGATV+++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIQDIEAKLSNAQVIDVTKMTANGRVIFGATVTVMNLDNEEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++ +  PGG+  YEIL+V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIRTPGGDVEYEILKVEYL 158


>gi|78065906|ref|YP_368675.1| transcription elongation factor GreA [Burkholderia sp. 383]
 gi|77966651|gb|ABB08031.1| transcription elongation factor GreA [Burkholderia sp. 383]
          Length = 158

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 84/158 (53%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G + ++ EL+  +  ERP +I AISEARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGAELLRDELQRLKSVERPAVINAISEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A+VID +   +  R+ F +TV L +  SGD   YQIVGD EAD+  GL+
Sbjct: 61  RIAELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158


>gi|161506138|ref|YP_001573250.1| transcription elongation factor GreA [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867485|gb|ABX24108.1| hypothetical protein SARI_04326 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 158

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ M+ + R+ FGATV+++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDVTKMANNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++ +  PGG+  YE+L+V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 158


>gi|320174545|gb|EFW49681.1| Transcription elongation factor GreA [Shigella dysenteriae CDC
           74-1112]
          Length = 158

 Score =  154 bits (389), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQTIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ M  + R+ FGATV+++  +S +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++ +  PGGE  +E+++V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158


>gi|167562359|ref|ZP_02355275.1| transcription elongation factor GreA [Burkholderia oklahomensis
           EO147]
 gi|167574344|ref|ZP_02367218.1| transcription elongation factor GreA [Burkholderia oklahomensis
           C6786]
          Length = 158

 Score =  154 bits (389), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G D+++ EL+  +  ERP +I AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ ++ A++ID +   +  R+ F ATV L +  +G+   YQIVGD EAD+  GL+
Sbjct: 61  RIAEIESKLSAAQIIDPTAVDADGRVVFAATVELEDLETGNTVKYQIVGDDEADIDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V AP G + YEI+ VL+I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVLYI 158


>gi|157148750|ref|YP_001456069.1| transcription elongation factor GreA [Citrobacter koseri ATCC
           BAA-895]
 gi|157085955|gb|ABV15633.1| hypothetical protein CKO_04582 [Citrobacter koseri ATCC BAA-895]
          Length = 158

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ M  + R+ FGATV+++  ++ +++ ++IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDNDEEQTWRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKE  D++++  PGGE  YE+++V ++
Sbjct: 121 SVNSPIARGLVGKEQDDVVTIKTPGGEVEYEVIKVEYL 158


>gi|311277845|ref|YP_003940076.1| transcription elongation factor GreA [Enterobacter cloacae SCF1]
 gi|308747040|gb|ADO46792.1| transcription elongation factor GreA [Enterobacter cloacae SCF1]
          Length = 158

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G DK+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGADKLREELEYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VIDIS M  + R+ FG+TV+++  +S ++++Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDISKMPNNGRVIFGSTVTVLNLDSDEEQSYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKE  D++++  PGGE  YEI++V ++
Sbjct: 121 SVNSPIARGLVGKEQDDVVTIRTPGGEVEYEIVKVDYL 158


>gi|188493925|ref|ZP_03001195.1| transcription elongation factor GreA [Escherichia coli 53638]
 gi|188489124|gb|EDU64227.1| transcription elongation factor GreA [Escherichia coli 53638]
          Length = 158

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ M  + R+ FGATV+++  +S +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSNEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++ +  PGGE  +E+++V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158


>gi|115351223|ref|YP_773062.1| transcription elongation factor GreA [Burkholderia ambifaria AMMD]
 gi|170697948|ref|ZP_02889031.1| transcription elongation factor GreA [Burkholderia ambifaria
           IOP40-10]
 gi|115281211|gb|ABI86728.1| transcription elongation factor GreA [Burkholderia ambifaria AMMD]
 gi|170137114|gb|EDT05359.1| transcription elongation factor GreA [Burkholderia ambifaria
           IOP40-10]
          Length = 158

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G ++++ EL+  +  ERP +I AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGAEQLRDELQRLKSVERPAVITAIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A+VID +   +  R+ F +TV L +  SGD   YQIVGD EAD+  GL+
Sbjct: 61  RIAELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158


>gi|319781954|ref|YP_004141430.1| transcription elongation factor GreA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167842|gb|ADV11380.1| transcription elongation factor GreA [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 157

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 109/157 (69%), Positives = 138/157 (87%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +GF  +++ELRWRQQEERPRII+AISEAR++GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MNKVPMTGEGFASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+ I RAEVID+S +SGD+I FGATV LV++++ +KK Y+IVGDQEADV+SG +S
Sbjct: 61  RVNELEDYIARAEVIDVSKLSGDKIKFGATVVLVDEDTEEKKTYRIVGDQEADVKSGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGKE+GD I VNAPGG + YEI+QV +I
Sbjct: 121 ISSPIARALIGKEVGDAIEVNAPGGARGYEIVQVQFI 157


>gi|161525197|ref|YP_001580209.1| transcription elongation factor GreA [Burkholderia multivorans ATCC
           17616]
 gi|189350064|ref|YP_001945692.1| transcription elongation factor GreA [Burkholderia multivorans ATCC
           17616]
 gi|221201965|ref|ZP_03575001.1| transcription elongation factor GreA [Burkholderia multivorans
           CGD2M]
 gi|221204905|ref|ZP_03577922.1| transcription elongation factor GreA [Burkholderia multivorans
           CGD2]
 gi|221213882|ref|ZP_03586855.1| transcription elongation factor GreA [Burkholderia multivorans
           CGD1]
 gi|160342626|gb|ABX15712.1| transcription elongation factor GreA [Burkholderia multivorans ATCC
           17616]
 gi|189334086|dbj|BAG43156.1| transcription elongation factor [Burkholderia multivorans ATCC
           17616]
 gi|221166059|gb|EED98532.1| transcription elongation factor GreA [Burkholderia multivorans
           CGD1]
 gi|221175762|gb|EEE08192.1| transcription elongation factor GreA [Burkholderia multivorans
           CGD2]
 gi|221178048|gb|EEE10459.1| transcription elongation factor GreA [Burkholderia multivorans
           CGD2M]
          Length = 158

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G ++++ EL+  +  ERP +I AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A++ID +   +  R+ F ATV L +  SGD   YQIVGD EAD+  GL+
Sbjct: 61  RIAELESKLSAAQIIDPTVLEADGRVVFAATVELEDLESGDTVKYQIVGDDEADIDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158


>gi|238757567|ref|ZP_04618752.1| Transcription elongation factor greA [Yersinia aldovae ATCC 35236]
 gi|238704329|gb|EEP96861.1| Transcription elongation factor greA [Yersinia aldovae ATCC 35236]
          Length = 158

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T  G +K+++EL + +   RP+II  I+ AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVNGAEKLREELDFLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ M  + R+ FG TV ++  +S ++++Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITKMPNNGRVIFGCTVRVLNVDSEEEQHYRIVGDDEADFKKNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D++ +  PGGE  YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILNVDYV 158


>gi|300023325|ref|YP_003755936.1| transcription elongation factor GreA [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525146|gb|ADJ23615.1| transcription elongation factor GreA [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 157

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 91/156 (58%), Positives = 120/156 (76%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++++P+T +G+  ++ EL+  +  ERPRII AISEARA+GDLSENAEY AAKE Q LNE 
Sbjct: 1   MERVPMTIEGYKNLETELQRLKAVERPRIIAAISEARAHGDLSENAEYHAAKEQQGLNEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AELE+ I RAEVID S +SGD + FGATV+L +++S DK  Y IVGD EAD+++G +S
Sbjct: 61  RVAELEDKINRAEVIDTSKLSGDTVKFGATVTLQDEDSEDKVTYTIVGDTEADLKNGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ISSPIARALIGK  G+ + V  P G +T E+L+V W
Sbjct: 121 ISSPIARALIGKTNGESVDVTTPKGTRTLEVLKVSW 156


>gi|114799104|ref|YP_759372.1| transcription elongation factor GreA [Hyphomonas neptunium ATCC
           15444]
 gi|122942711|sp|Q0C4H1|GREA_HYPNA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|114739278|gb|ABI77403.1| transcription elongation factor GreA [Hyphomonas neptunium ATCC
           15444]
          Length = 157

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/156 (51%), Positives = 121/156 (77%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T++G   +Q EL+  +  ERP II AISEAR++GDLSENAEY AAKE Q+  EG
Sbjct: 1   MERIPMTAEGHAALQAELKVLKSVERPSIIAAISEARSHGDLSENAEYHAAKEKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R++EL++ + RA+VID+S + G ++ FGATV++ + ++ D++ Y+IVG+ EADV+ G +S
Sbjct: 61  RISELDDKLARADVIDVSKLGGSKVRFGATVTIADVDTEDEQTYKIVGEDEADVKQGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ++SPIARALIGKE GD   V AP G + YE+++V++
Sbjct: 121 VTSPIARALIGKEEGDEAEVAAPAGARAYEVIKVVY 156


>gi|13472314|ref|NP_103881.1| transcription elongation factor GreA [Mesorhizobium loti
           MAFF303099]
 gi|25453003|sp|Q98I49|GREA_RHILO RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|14023060|dbj|BAB49667.1| transcriptional elongation factor [Mesorhizobium loti MAFF303099]
          Length = 157

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 108/157 (68%), Positives = 139/157 (88%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +GF  +++ELRWRQQEERPRII+AISEAR++GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MNKVPMTGEGFASLKEELRWRQQEERPRIIEAISEARSHGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE++I RAEVID++ +SGD++ FGATV LV++++ +KK YQIVGDQEADV+SG +S
Sbjct: 61  RVNELEDLIARAEVIDVTKLSGDKVKFGATVVLVDEDTEEKKTYQIVGDQEADVKSGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGKE+GD I VNAPGG + YEI+QV +I
Sbjct: 121 ISSPIARALIGKEVGDAIEVNAPGGARGYEIVQVQFI 157


>gi|149194430|ref|ZP_01871527.1| transcription elongation factor GreA [Caminibacter mediatlanticus
           TB-2]
 gi|149135605|gb|EDM24084.1| transcription elongation factor GreA [Caminibacter mediatlanticus
           TB-2]
          Length = 162

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 73/154 (47%), Positives = 103/154 (66%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K P+T  G++K+ +EL + +   RP + K I  AR  GDL ENAEY AAKE Q   E R+
Sbjct: 2   KEPMTKYGYEKLSKELEYLKTVARPEVAKEIDAARELGDLKENAEYHAAKEKQAHIERRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           AEL +I++RA V+D    + DR++FG+TV LV+ +S ++  Y IVG  EAD   GL+S +
Sbjct: 62  AELSDILSRAVVVDPKEHAHDRVSFGSTVYLVDLDSDEEFKYTIVGAPEADPDKGLISYN 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+A+ALIGK +GD + VN P G K YEI ++ +
Sbjct: 122 SPLAKALIGKHVGDEVEVNLPSGTKYYEIEKICF 155


>gi|283788181|ref|YP_003368046.1| transcription elongation factor [Citrobacter rodentium ICC168]
 gi|282951635|emb|CBG91335.1| transcription elongation factor [Citrobacter rodentium ICC168]
          Length = 158

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPLTLRGAEKLREELDFLKTVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ M  + R+ FGATV+++  +S +++ ++IVGD EAD +  L+
Sbjct: 61  RINDIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDSDEEQTWRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++ +  PGGE  YEI +V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGEVEYEITKVEYL 158


>gi|238750117|ref|ZP_04611620.1| Transcription elongation factor greA [Yersinia rohdei ATCC 43380]
 gi|238711661|gb|EEQ03876.1| Transcription elongation factor greA [Yersinia rohdei ATCC 43380]
          Length = 158

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T  G DK+++EL + +   RP+II  I++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVGGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDIS M  + R+ FGATV ++  +S +++ Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDISKMPNNGRVIFGATVRVLNVDSEEEQQYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D++ +  PGGE  YEIL+V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILKVDYV 158


>gi|225627946|ref|ZP_03785982.1| transcription elongation factor GreA [Brucella ceti str. Cudo]
 gi|225617109|gb|EEH14155.1| transcription elongation factor GreA [Brucella ceti str. Cudo]
          Length = 203

 Score =  154 bits (388), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 100/157 (63%), Positives = 136/157 (86%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 47  MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 106

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 107 RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 166

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISS IARALIGK  GD I VNAPGG ++YEI+ + ++
Sbjct: 167 ISSLIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 203


>gi|206577730|ref|YP_002236407.1| transcription elongation factor GreA [Klebsiella pneumoniae 342]
 gi|288933391|ref|YP_003437450.1| transcription elongation factor GreA [Klebsiella variicola At-22]
 gi|290511558|ref|ZP_06550927.1| transcription elongation factor GreA [Klebsiella sp. 1_1_55]
 gi|206566788|gb|ACI08564.1| transcription elongation factor GreA [Klebsiella pneumoniae 342]
 gi|288888120|gb|ADC56438.1| transcription elongation factor GreA [Klebsiella variicola At-22]
 gi|289776551|gb|EFD84550.1| transcription elongation factor GreA [Klebsiella sp. 1_1_55]
          Length = 158

 Score =  154 bits (388), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDYLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VIDI+ M  + R+ FG+TVS++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++++  PGGE  YEI +V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVTIRTPGGEVEYEITKVEYL 158


>gi|134295356|ref|YP_001119091.1| transcription elongation factor GreA [Burkholderia vietnamiensis
           G4]
 gi|134138513|gb|ABO54256.1| transcription elongation factor GreA [Burkholderia vietnamiensis
           G4]
          Length = 158

 Score =  154 bits (388), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G ++++ EL+  +  ERP +I AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGAEQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ ++ A+VID +   +  R+ F +TV L +  SGD   YQIVGD EAD+  GL+
Sbjct: 61  RIAEIESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V APGG + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPGGVREYEIISVSYI 158


>gi|295677142|ref|YP_003605666.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
 gi|295436985|gb|ADG16155.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
          Length = 160

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 86/158 (54%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G D ++ EL+  +  ERP +I +I+EARA GDLSENAEY AAKE Q   EG
Sbjct: 3   MSTIPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 62

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ +  A+VID S   +  R+ FGAT+ L +  SG    YQIVGD EAD+  GL+
Sbjct: 63  RIAEIESKLAGAQVIDPSQVEADGRVVFGATLELEDLESGASVKYQIVGDDEADIDHGLI 122

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+ SV APGG + YEI+ V +I
Sbjct: 123 SISSPIARALIGKSEGDVASVQAPGGIREYEIIAVSYI 160


>gi|110634467|ref|YP_674675.1| transcription elongation factor GreA [Mesorhizobium sp. BNC1]
 gi|123353513|sp|Q11GG5|GREA_MESSB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|110285451|gb|ABG63510.1| transcription elongation factor GreA [Chelativorans sp. BNC1]
          Length = 157

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 103/156 (66%), Positives = 138/156 (88%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T  G++ +++ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MNKVPMTLAGYESLKEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R++ELE++I RAEVID++ +SGD + FGATV LV++++ ++K YQIVGDQEADV+SG +S
Sbjct: 61  RISELEDLIARAEVIDVTKLSGDTVKFGATVVLVDEDTEEEKTYQIVGDQEADVKSGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ISSPIARALIGK +GD+I VNAPGG + YE+L+V +
Sbjct: 121 ISSPIARALIGKGVGDLIEVNAPGGARGYEVLRVQY 156


>gi|238761759|ref|ZP_04622733.1| Transcription elongation factor greA [Yersinia kristensenii ATCC
           33638]
 gi|238699873|gb|EEP92616.1| Transcription elongation factor greA [Yersinia kristensenii ATCC
           33638]
          Length = 158

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T  G +K+++EL + +   RP+II  I+ AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVNGAEKLREELDFLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ M  + R+ FG+TV ++   S +++ Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITKMPNNGRVIFGSTVRVLNVVSEEEQQYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D++ +  PGGE  YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILSVDYV 158


>gi|152972105|ref|YP_001337251.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896688|ref|YP_002921433.1| transcription elongation factor GreA [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262042740|ref|ZP_06015894.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|329997717|ref|ZP_08302900.1| transcription elongation factor GreA [Klebsiella sp. MS 92-3]
 gi|150956954|gb|ABR78984.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549015|dbj|BAH65366.1| transcription elongation factor [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259039965|gb|EEW41082.1| transcription elongation factor GreA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328538926|gb|EGF64984.1| transcription elongation factor GreA [Klebsiella sp. MS 92-3]
          Length = 158

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDYLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VIDI+ M  + R+ FG+TVS++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDITKMPNNGRVIFGSTVSVLNLDTDEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++++  PGGE  YEI +V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVTIRTPGGEVEYEITKVEYL 158


>gi|187477431|ref|YP_785455.1| transcription elongation factor [Bordetella avium 197N]
 gi|115422017|emb|CAJ48539.1| transcription elongation factor [Bordetella avium 197N]
          Length = 158

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +++ QEL   +  ERP +I AI+EARA GDLSENAEY AA+E Q   EG
Sbjct: 1   MSAIPLTVRGAERLNQELHRLKTIERPAVINAIAEARAQGDLSENAEYDAARERQAFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE  ++ A +ID S   +  R  FGATV + +  SGD+  YQIVGD EAD++S L+
Sbjct: 61  RIAELEGTLSNAHLIDPSALDAEGRAVFGATVEIEDLGSGDRLTYQIVGDVEADIKSNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSP+ARALIGK  GD++ V AP G + YE++ V ++
Sbjct: 121 SVSSPVARALIGKSEGDVVEVKAPAGLREYEVIGVRYL 158


>gi|293393162|ref|ZP_06637477.1| transcription elongation factor GreA [Serratia odorifera DSM 4582]
 gi|291424308|gb|EFE97522.1| transcription elongation factor GreA [Serratia odorifera DSM 4582]
          Length = 158

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T  G +K+++EL + +   RP+II  I+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTLFGAEKLREELEYLKSVRRPKIIADIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ M    R+ FG+TV+++  +S D+  Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITKMPNTGRVIFGSTVTVMNLDSEDEVTYRIVGDDEADFKKNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SP+AR LIGKE  D++ +  PGG+  YEIL+V ++
Sbjct: 121 SVNSPMARGLIGKEQDDVVVIKTPGGDVDYEILKVEYL 158


>gi|119897674|ref|YP_932887.1| putative transcription elongation factor [Azoarcus sp. BH72]
 gi|119670087|emb|CAL94000.1| putative transcription elongation factor [Azoarcus sp. BH72]
          Length = 158

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 80/158 (50%), Positives = 109/158 (68%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T  G +K++ EL   +  +RP +I AI+EAR++GDLSENAEY AAKE Q   EG
Sbjct: 1   MNKTPLTIAGAEKLRLELHRLKTVDRPNVIAAIAEARSHGDLSENAEYDAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E  +  A++ID +   +  R  FGATV L + +SG    YQIVG+ EAD++   +
Sbjct: 61  RIAEVEGKLANAQIIDPTLLDADGRCVFGATVELEDMDSGQVVTYQIVGEDEADIKEFKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GDI  V APGG + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKYAGDIAEVQAPGGIREYEIIDVRYI 158


>gi|24114470|ref|NP_708980.1| transcription elongation factor GreA [Shigella flexneri 2a str.
           301]
 gi|26249764|ref|NP_755804.1| transcription elongation factor GreA [Escherichia coli CFT073]
 gi|30064519|ref|NP_838690.1| transcription elongation factor GreA [Shigella flexneri 2a str.
           2457T]
 gi|38704147|ref|NP_312087.2| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           Sakai]
 gi|89109944|ref|AP_003724.1| transcription elongation factor [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111554|ref|NP_417648.4| transcript cleavage factor [Escherichia coli str. K-12 substr.
           MG1655]
 gi|91212603|ref|YP_542589.1| transcription elongation factor GreA [Escherichia coli UTI89]
 gi|110643421|ref|YP_671151.1| transcription elongation factor GreA [Escherichia coli 536]
 gi|110807047|ref|YP_690567.1| transcription elongation factor GreA [Shigella flexneri 5 str.
           8401]
 gi|117625475|ref|YP_858798.1| transcription elongation factor GreA [Escherichia coli APEC O1]
 gi|157156605|ref|YP_001464656.1| transcription elongation factor GreA [Escherichia coli E24377A]
 gi|157162664|ref|YP_001459982.1| transcription elongation factor GreA [Escherichia coli HS]
 gi|161367516|ref|NP_289755.2| transcription elongation factor GreA [Escherichia coli O157:H7
           EDL933]
 gi|161950034|ref|YP_404844.2| transcription elongation factor GreA [Shigella dysenteriae Sd197]
 gi|161984851|ref|YP_409528.2| transcription elongation factor GreA [Shigella boydii Sb227]
 gi|161986440|ref|YP_312137.2| transcription elongation factor GreA [Shigella sonnei Ss046]
 gi|168752874|ref|ZP_02777896.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754163|ref|ZP_02779170.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC4401]
 gi|168769037|ref|ZP_02794044.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC4486]
 gi|168781325|ref|ZP_02806332.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786067|ref|ZP_02811074.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC869]
 gi|170018569|ref|YP_001723523.1| transcription elongation factor GreA [Escherichia coli ATCC 8739]
 gi|170082716|ref|YP_001732036.1| transcription elongation factor [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170683303|ref|YP_001745453.1| transcription elongation factor GreA [Escherichia coli SMS-3-5]
 gi|187733737|ref|YP_001881904.1| transcription elongation factor GreA [Shigella boydii CDC 3083-94]
 gi|194430233|ref|ZP_03062731.1| transcription elongation factor GreA [Escherichia coli B171]
 gi|195938400|ref|ZP_03083782.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC4024]
 gi|208812520|ref|ZP_03253849.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818669|ref|ZP_03258989.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400428|ref|YP_002272651.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209920656|ref|YP_002294740.1| transcription elongation factor GreA [Escherichia coli SE11]
 gi|215488497|ref|YP_002330928.1| transcription elongation factor GreA [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326880|ref|ZP_03442963.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           TW14588]
 gi|218550464|ref|YP_002384255.1| transcription elongation factor GreA [Escherichia fergusonii ATCC
           35469]
 gi|218555751|ref|YP_002388664.1| transcription elongation factor GreA [Escherichia coli IAI1]
 gi|218560251|ref|YP_002393164.1| transcription elongation factor GreA [Escherichia coli S88]
 gi|218691471|ref|YP_002399683.1| transcription elongation factor GreA [Escherichia coli ED1a]
 gi|218696886|ref|YP_002404553.1| transcription elongation factor GreA [Escherichia coli 55989]
 gi|218701950|ref|YP_002409579.1| transcription elongation factor GreA [Escherichia coli IAI39]
 gi|218706801|ref|YP_002414320.1| transcription elongation factor GreA [Escherichia coli UMN026]
 gi|227887902|ref|ZP_04005707.1| transcription elongation factor GreA [Escherichia coli 83972]
 gi|237706067|ref|ZP_04536548.1| transcription elongation factor greA [Escherichia sp. 3_2_53FAA]
 gi|238902283|ref|YP_002928079.1| transcription elongation factor [Escherichia coli BW2952]
 gi|253771985|ref|YP_003034816.1| transcription elongation factor GreA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038346|ref|ZP_04872404.1| transcription elongation factor GreA [Escherichia sp. 1_1_43]
 gi|254163123|ref|YP_003046231.1| transcription elongation factor GreA [Escherichia coli B str.
           REL606]
 gi|254795130|ref|YP_003079967.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           TW14359]
 gi|256018900|ref|ZP_05432765.1| transcription elongation factor GreA [Shigella sp. D9]
 gi|256024244|ref|ZP_05438109.1| transcription elongation factor GreA [Escherichia sp. 4_1_40B]
 gi|260845994|ref|YP_003223772.1| transcription elongation factor GreA [Escherichia coli O103:H2 str.
           12009]
 gi|260857308|ref|YP_003231199.1| transcription elongation factor GreA [Escherichia coli O26:H11 str.
           11368]
 gi|261228192|ref|ZP_05942473.1| transcription elongation factor [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261255048|ref|ZP_05947581.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284555|ref|YP_003501373.1| Transcription elongation factor greA [Escherichia coli O55:H7 str.
           CB9615]
 gi|293406790|ref|ZP_06650716.1| transcription elongation factor greA [Escherichia coli FVEC1412]
 gi|293412553|ref|ZP_06655276.1| transcription elongation factor greA [Escherichia coli B354]
 gi|293416611|ref|ZP_06659250.1| transcription elongation factor greA [Escherichia coli B185]
 gi|293449515|ref|ZP_06663936.1| transcription elongation factor greA [Escherichia coli B088]
 gi|297519952|ref|ZP_06938338.1| transcription elongation factor GreA [Escherichia coli OP50]
 gi|298382531|ref|ZP_06992128.1| transcription elongation factor greA [Escherichia coli FVEC1302]
 gi|300817566|ref|ZP_07097782.1| transcription elongation factor GreA [Escherichia coli MS 107-1]
 gi|300823855|ref|ZP_07103979.1| transcription elongation factor GreA [Escherichia coli MS 119-7]
 gi|300897946|ref|ZP_07116324.1| transcription elongation factor GreA [Escherichia coli MS 198-1]
 gi|300904368|ref|ZP_07122220.1| transcription elongation factor GreA [Escherichia coli MS 84-1]
 gi|300926078|ref|ZP_07141897.1| transcription elongation factor GreA [Escherichia coli MS 182-1]
 gi|300929873|ref|ZP_07145318.1| transcription elongation factor GreA [Escherichia coli MS 187-1]
 gi|300938093|ref|ZP_07152870.1| transcription elongation factor GreA [Escherichia coli MS 21-1]
 gi|300948832|ref|ZP_07162899.1| transcription elongation factor GreA [Escherichia coli MS 116-1]
 gi|300955767|ref|ZP_07168111.1| transcription elongation factor GreA [Escherichia coli MS 175-1]
 gi|300980086|ref|ZP_07174836.1| transcription elongation factor GreA [Escherichia coli MS 200-1]
 gi|300990828|ref|ZP_07179355.1| transcription elongation factor GreA [Escherichia coli MS 45-1]
 gi|301022036|ref|ZP_07185979.1| transcription elongation factor GreA [Escherichia coli MS 69-1]
 gi|301047975|ref|ZP_07195018.1| transcription elongation factor GreA [Escherichia coli MS 185-1]
 gi|301301761|ref|ZP_07207895.1| transcription elongation factor GreA [Escherichia coli MS 124-1]
 gi|301326392|ref|ZP_07219750.1| transcription elongation factor GreA [Escherichia coli MS 78-1]
 gi|301644892|ref|ZP_07244863.1| transcription elongation factor GreA [Escherichia coli MS 146-1]
 gi|306816477|ref|ZP_07450609.1| transcription elongation factor GreA [Escherichia coli NC101]
 gi|307139867|ref|ZP_07499223.1| transcription elongation factor GreA [Escherichia coli H736]
 gi|307313114|ref|ZP_07592740.1| GreA/GreB family elongation factor [Escherichia coli W]
 gi|309793759|ref|ZP_07688185.1| transcription elongation factor GreA [Escherichia coli MS 145-7]
 gi|312968481|ref|ZP_07782690.1| transcription elongation factor GreA domain protein [Escherichia
           coli 2362-75]
 gi|312972545|ref|ZP_07786719.1| transcription elongation factor GreA domain protein [Escherichia
           coli 1827-70]
 gi|331643879|ref|ZP_08345010.1| transcription elongation factor GreA [Escherichia coli H736]
 gi|331648981|ref|ZP_08350069.1| transcription elongation factor GreA [Escherichia coli M605]
 gi|331654785|ref|ZP_08355785.1| transcription elongation factor GreA [Escherichia coli M718]
 gi|331659468|ref|ZP_08360410.1| transcription elongation factor GreA [Escherichia coli TA206]
 gi|331664793|ref|ZP_08365698.1| transcription elongation factor GreA [Escherichia coli TA143]
 gi|331670008|ref|ZP_08370853.1| transcription elongation factor GreA [Escherichia coli TA271]
 gi|331674713|ref|ZP_08375472.1| transcription elongation factor GreA [Escherichia coli TA280]
 gi|331679260|ref|ZP_08379932.1| transcription elongation factor GreA [Escherichia coli H591]
 gi|331684828|ref|ZP_08385420.1| transcription elongation factor GreA [Escherichia coli H299]
 gi|332279988|ref|ZP_08392401.1| transcription elongation factor GreA [Shigella sp. D9]
 gi|62288136|sp|P0A6W5|GREA_ECOLI RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|62288137|sp|P0A6W6|GREA_ECOL6 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|62288138|sp|P0A6W7|GREA_ECO57 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|62288139|sp|P0A6W8|GREA_SHIFL RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|157831240|pdb|1GRJ|A Chain A, Grea Transcript Cleavage Factor From Escherichia Coli
 gi|26110192|gb|AAN82378.1|AE016767_138 Transcription elongation factor greA [Escherichia coli CFT073]
 gi|41611|emb|CAA38521.1| unnamed protein product [Escherichia coli K-12]
 gi|746399|gb|AAA97506.1| transcription elongation factor [Escherichia coli]
 gi|24053653|gb|AAN44687.1| transcription elongation factor [Shigella flexneri 2a str. 301]
 gi|30042778|gb|AAP18501.1| transcription elongation factor [Shigella flexneri 2a str. 2457T]
 gi|85675975|dbj|BAE77225.1| transcription elongation factor [Escherichia coli str. K12 substr.
           W3110]
 gi|87082225|gb|AAC76213.2| transcript cleavage factor [Escherichia coli str. K-12 substr.
           MG1655]
 gi|91074177|gb|ABE09058.1| transcription elongation factor GreA (transcript cleavage factor
           GreA) [Escherichia coli UTI89]
 gi|110345013|gb|ABG71250.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Escherichia coli 536]
 gi|110616595|gb|ABF05262.1| transcription elongation factor [Shigella flexneri 5 str. 8401]
 gi|115514599|gb|ABJ02674.1| transcription elongation factor GreA [Escherichia coli APEC O1]
 gi|157068344|gb|ABV07599.1| transcription elongation factor GreA [Escherichia coli HS]
 gi|157078635|gb|ABV18343.1| transcription elongation factor GreA [Escherichia coli E24377A]
 gi|169753497|gb|ACA76196.1| transcription elongation factor GreA [Escherichia coli ATCC 8739]
 gi|169890551|gb|ACB04258.1| transcription elongation factor [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170521021|gb|ACB19199.1| transcription elongation factor GreA [Escherichia coli SMS-3-5]
 gi|187430729|gb|ACD10003.1| transcription elongation factor GreA [Shigella boydii CDC 3083-94]
 gi|188013493|gb|EDU51615.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC4113]
 gi|189001112|gb|EDU70098.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358744|gb|EDU77163.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361832|gb|EDU80251.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC4486]
 gi|189373995|gb|EDU92411.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC869]
 gi|194411734|gb|EDX28058.1| transcription elongation factor GreA [Escherichia coli B171]
 gi|208733797|gb|EDZ82484.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208738792|gb|EDZ86474.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161828|gb|ACI39261.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209913915|dbj|BAG78989.1| transcription elongation factor [Escherichia coli SE11]
 gi|215266569|emb|CAS11008.1| transcription elongation factor [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217319247|gb|EEC27672.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           TW14588]
 gi|218353618|emb|CAU99817.1| transcription elongation factor [Escherichia coli 55989]
 gi|218358005|emb|CAQ90651.1| transcription elongation factor [Escherichia fergusonii ATCC 35469]
 gi|218362519|emb|CAR00143.1| transcription elongation factor [Escherichia coli IAI1]
 gi|218367020|emb|CAR04791.1| transcription elongation factor [Escherichia coli S88]
 gi|218371936|emb|CAR19792.1| transcription elongation factor [Escherichia coli IAI39]
 gi|218429035|emb|CAR09981.2| transcription elongation factor [Escherichia coli ED1a]
 gi|218433898|emb|CAR14815.1| transcription elongation factor [Escherichia coli UMN026]
 gi|222034898|emb|CAP77641.1| Transcription elongation factor greA [Escherichia coli LF82]
 gi|226839970|gb|EEH71991.1| transcription elongation factor GreA [Escherichia sp. 1_1_43]
 gi|226899107|gb|EEH85366.1| transcription elongation factor greA [Escherichia sp. 3_2_53FAA]
 gi|227835298|gb|EEJ45764.1| transcription elongation factor GreA [Escherichia coli 83972]
 gi|238863677|gb|ACR65675.1| transcription elongation factor [Escherichia coli BW2952]
 gi|242378724|emb|CAQ33514.1| transcription elongation factor GreA [Escherichia coli BL21(DE3)]
 gi|253323029|gb|ACT27631.1| transcription elongation factor GreA [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975024|gb|ACT40695.1| transcription elongation factor GreA [Escherichia coli B str.
           REL606]
 gi|253979180|gb|ACT44850.1| transcription elongation factor GreA [Escherichia coli BL21(DE3)]
 gi|254594530|gb|ACT73891.1| transcription elongation factor [Escherichia coli O157:H7 str.
           TW14359]
 gi|257755957|dbj|BAI27459.1| transcription elongation factor GreA [Escherichia coli O26:H11 str.
           11368]
 gi|257761141|dbj|BAI32638.1| transcription elongation factor GreA [Escherichia coli O103:H2 str.
           12009]
 gi|260447792|gb|ACX38214.1| transcription elongation factor GreA [Escherichia coli DH1]
 gi|281180223|dbj|BAI56553.1| transcription elongation factor [Escherichia coli SE15]
 gi|281602564|gb|ADA75548.1| Transcription elongation factor greA [Shigella flexneri 2002017]
 gi|284923204|emb|CBG36298.1| transcription elongation factor [Escherichia coli 042]
 gi|290764428|gb|ADD58389.1| Transcription elongation factor greA [Escherichia coli O55:H7 str.
           CB9615]
 gi|291322605|gb|EFE62034.1| transcription elongation factor greA [Escherichia coli B088]
 gi|291426796|gb|EFE99828.1| transcription elongation factor greA [Escherichia coli FVEC1412]
 gi|291431967|gb|EFF04950.1| transcription elongation factor greA [Escherichia coli B185]
 gi|291469324|gb|EFF11815.1| transcription elongation factor greA [Escherichia coli B354]
 gi|294491555|gb|ADE90311.1| transcription elongation factor GreA [Escherichia coli IHE3034]
 gi|298277671|gb|EFI19187.1| transcription elongation factor greA [Escherichia coli FVEC1302]
 gi|300300160|gb|EFJ56545.1| transcription elongation factor GreA [Escherichia coli MS 185-1]
 gi|300307860|gb|EFJ62380.1| transcription elongation factor GreA [Escherichia coli MS 200-1]
 gi|300317362|gb|EFJ67146.1| transcription elongation factor GreA [Escherichia coli MS 175-1]
 gi|300358338|gb|EFJ74208.1| transcription elongation factor GreA [Escherichia coli MS 198-1]
 gi|300397751|gb|EFJ81289.1| transcription elongation factor GreA [Escherichia coli MS 69-1]
 gi|300403691|gb|EFJ87229.1| transcription elongation factor GreA [Escherichia coli MS 84-1]
 gi|300407048|gb|EFJ90586.1| transcription elongation factor GreA [Escherichia coli MS 45-1]
 gi|300417867|gb|EFK01178.1| transcription elongation factor GreA [Escherichia coli MS 182-1]
 gi|300451688|gb|EFK15308.1| transcription elongation factor GreA [Escherichia coli MS 116-1]
 gi|300456914|gb|EFK20407.1| transcription elongation factor GreA [Escherichia coli MS 21-1]
 gi|300462206|gb|EFK25699.1| transcription elongation factor GreA [Escherichia coli MS 187-1]
 gi|300523623|gb|EFK44692.1| transcription elongation factor GreA [Escherichia coli MS 119-7]
 gi|300529864|gb|EFK50926.1| transcription elongation factor GreA [Escherichia coli MS 107-1]
 gi|300842742|gb|EFK70502.1| transcription elongation factor GreA [Escherichia coli MS 124-1]
 gi|300846911|gb|EFK74671.1| transcription elongation factor GreA [Escherichia coli MS 78-1]
 gi|301076798|gb|EFK91604.1| transcription elongation factor GreA [Escherichia coli MS 146-1]
 gi|305850042|gb|EFM50501.1| transcription elongation factor GreA [Escherichia coli NC101]
 gi|306907025|gb|EFN37533.1| GreA/GreB family elongation factor [Escherichia coli W]
 gi|307555275|gb|ADN48050.1| transcription elongation factor GreA [Escherichia coli ABU 83972]
 gi|307625220|gb|ADN69524.1| transcription elongation factor GreA [Escherichia coli UM146]
 gi|308122716|gb|EFO59978.1| transcription elongation factor GreA [Escherichia coli MS 145-7]
 gi|309703607|emb|CBJ02947.1| transcription elongation factor [Escherichia coli ETEC H10407]
 gi|310334922|gb|EFQ01127.1| transcription elongation factor GreA domain protein [Escherichia
           coli 1827-70]
 gi|312286699|gb|EFR14610.1| transcription elongation factor GreA domain protein [Escherichia
           coli 2362-75]
 gi|312947738|gb|ADR28565.1| transcription elongation factor GreA [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|313648576|gb|EFS13018.1| transcription elongation factor GreA domain protein [Shigella
           flexneri 2a str. 2457T]
 gi|315062487|gb|ADT76814.1| transcription elongation factor [Escherichia coli W]
 gi|315137767|dbj|BAJ44926.1| transcription elongation factor greA [Escherichia coli DH1]
 gi|315257106|gb|EFU37074.1| transcription elongation factor GreA [Escherichia coli MS 85-1]
 gi|315288955|gb|EFU48353.1| transcription elongation factor GreA [Escherichia coli MS 110-3]
 gi|315294888|gb|EFU54227.1| transcription elongation factor GreA [Escherichia coli MS 153-1]
 gi|315297888|gb|EFU57158.1| transcription elongation factor GreA [Escherichia coli MS 16-3]
 gi|315617264|gb|EFU97873.1| transcription elongation factor GreA domain protein [Escherichia
           coli 3431]
 gi|320181456|gb|EFW56374.1| Transcription elongation factor GreA [Shigella boydii ATCC 9905]
 gi|320186668|gb|EFW61392.1| Transcription elongation factor GreA [Shigella flexneri CDC 796-83]
 gi|320189534|gb|EFW64193.1| Transcription elongation factor GreA [Escherichia coli O157:H7 str.
           EC1212]
 gi|320194666|gb|EFW69296.1| Transcription elongation factor GreA [Escherichia coli WV_060327]
 gi|320202095|gb|EFW76670.1| Transcription elongation factor GreA [Escherichia coli EC4100B]
 gi|320640252|gb|EFX09824.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           G5101]
 gi|320645549|gb|EFX14558.1| transcription elongation factor GreA [Escherichia coli O157:H- str.
           493-89]
 gi|320650859|gb|EFX19316.1| transcription elongation factor GreA [Escherichia coli O157:H- str.
           H 2687]
 gi|320656240|gb|EFX24152.1| transcription elongation factor GreA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661930|gb|EFX29338.1| transcription elongation factor GreA [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320666765|gb|EFX33744.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323162873|gb|EFZ48708.1| transcription elongation factor GreA domain protein [Escherichia
           coli E128010]
 gi|323165141|gb|EFZ50931.1| transcription elongation factor GreA domain protein [Shigella
           sonnei 53G]
 gi|323183135|gb|EFZ68533.1| transcription elongation factor GreA domain protein [Escherichia
           coli 1357]
 gi|323189198|gb|EFZ74482.1| transcription elongation factor GreA domain protein [Escherichia
           coli RN587/1]
 gi|323376925|gb|ADX49193.1| transcription elongation factor GreA [Escherichia coli KO11]
 gi|323936125|gb|EGB32419.1| transcription elongation protein GreA [Escherichia coli E1520]
 gi|323941719|gb|EGB37898.1| transcription elongation proteinGreA [Escherichia coli E482]
 gi|323946965|gb|EGB42981.1| transcription elongation protein GreA [Escherichia coli H120]
 gi|323951300|gb|EGB47175.1| transcription elongation proteinGreA [Escherichia coli H252]
 gi|323957672|gb|EGB53386.1| transcription elongation proteinGreA [Escherichia coli H263]
 gi|323961164|gb|EGB56778.1| transcription elongation proteinGreA [Escherichia coli H489]
 gi|323966361|gb|EGB61795.1| transcription elongation proteinGreA [Escherichia coli M863]
 gi|323970256|gb|EGB65527.1| transcription elongation proteinGreA [Escherichia coli TA007]
 gi|323979102|gb|EGB74180.1| transcription elongation proteinGreA [Escherichia coli TW10509]
 gi|324008752|gb|EGB77971.1| transcription elongation factor GreA [Escherichia coli MS 57-2]
 gi|324012130|gb|EGB81349.1| transcription elongation factor GreA [Escherichia coli MS 60-1]
 gi|324018294|gb|EGB87513.1| transcription elongation factor GreA [Escherichia coli MS 117-3]
 gi|324115215|gb|EGC09179.1| transcription elongation proteinGreA [Escherichia fergusonii B253]
 gi|324119546|gb|EGC13428.1| transcription elongation proteinGreA [Escherichia coli E1167]
 gi|325498762|gb|EGC96621.1| transcription elongation factor GreA [Escherichia fergusonii
           ECD227]
 gi|326337881|gb|EGD61715.1| Transcription elongation factor GreA [Escherichia coli O157:H7 str.
           1125]
 gi|326347451|gb|EGD71176.1| Transcription elongation factor GreA [Escherichia coli O157:H7 str.
           1044]
 gi|330909235|gb|EGH37749.1| transcription elongation factor GreA [Escherichia coli AA86]
 gi|331037350|gb|EGI09574.1| transcription elongation factor GreA [Escherichia coli H736]
 gi|331042728|gb|EGI14870.1| transcription elongation factor GreA [Escherichia coli M605]
 gi|331048167|gb|EGI20244.1| transcription elongation factor GreA [Escherichia coli M718]
 gi|331054050|gb|EGI26079.1| transcription elongation factor GreA [Escherichia coli TA206]
 gi|331058041|gb|EGI30023.1| transcription elongation factor GreA [Escherichia coli TA143]
 gi|331062921|gb|EGI34835.1| transcription elongation factor GreA [Escherichia coli TA271]
 gi|331068152|gb|EGI39548.1| transcription elongation factor GreA [Escherichia coli TA280]
 gi|331073325|gb|EGI44648.1| transcription elongation factor GreA [Escherichia coli H591]
 gi|331078443|gb|EGI49649.1| transcription elongation factor GreA [Escherichia coli H299]
 gi|332086244|gb|EGI91402.1| transcription elongation factor GreA domain protein [Shigella
           boydii 5216-82]
 gi|332086457|gb|EGI91604.1| transcription elongation factor GreA domain protein [Shigella
           dysenteriae 155-74]
 gi|332090708|gb|EGI95802.1| transcription elongation factor GreA domain protein [Shigella
           boydii 3594-74]
 gi|332102340|gb|EGJ05686.1| transcription elongation factor GreA [Shigella sp. D9]
 gi|332345137|gb|AEE58471.1| transcription elongation factor protein GreA [Escherichia coli
           UMNK88]
 gi|332752340|gb|EGJ82730.1| transcription elongation factor GreA domain protein [Shigella
           flexneri 4343-70]
 gi|332752866|gb|EGJ83251.1| transcription elongation factor GreA domain protein [Shigella
           flexneri K-671]
 gi|332754345|gb|EGJ84711.1| transcription elongation factor GreA domain protein [Shigella
           flexneri 2747-71]
 gi|332765177|gb|EGJ95404.1| transcription elongation factor GreA [Shigella flexneri 2930-71]
 gi|332998823|gb|EGK18419.1| transcription elongation factor GreA domain protein [Shigella
           flexneri VA-6]
 gi|332999259|gb|EGK18845.1| transcription elongation factor GreA domain protein [Shigella
           flexneri K-272]
 gi|333000243|gb|EGK19826.1| transcription elongation factor GreA domain protein [Shigella
           flexneri K-218]
 gi|333014600|gb|EGK33947.1| transcription elongation factor GreA domain protein [Shigella
           flexneri K-304]
 gi|333014983|gb|EGK34327.1| transcription elongation factor GreA domain protein [Shigella
           flexneri K-227]
          Length = 158

 Score =  154 bits (388), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ M  + R+ FGATV+++  +S +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++ +  PGGE  +E+++V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158


>gi|167836215|ref|ZP_02463098.1| transcription elongation factor GreA [Burkholderia thailandensis
           MSMB43]
          Length = 158

 Score =  153 bits (387), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G D+++ EL+  +  ERP +I AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ ++ A++ID +   +  R+ F ATV L +  +GD   YQIVGD EAD+  GL+
Sbjct: 61  RIAEIESKLSAAQIIDPTVVDADGRVVFAATVELEDLETGDTVKYQIVGDDEADLDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V AP G + YEI+ VL+I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVLYI 158


>gi|83719378|ref|YP_443292.1| transcription elongation factor GreA [Burkholderia thailandensis
           E264]
 gi|167582309|ref|ZP_02375183.1| transcription elongation factor GreA [Burkholderia thailandensis
           TXDOH]
 gi|167620406|ref|ZP_02389037.1| transcription elongation factor GreA [Burkholderia thailandensis
           Bt4]
 gi|257139528|ref|ZP_05587790.1| transcription elongation factor GreA [Burkholderia thailandensis
           E264]
 gi|83653203|gb|ABC37266.1| transcription elongation factor GreA [Burkholderia thailandensis
           E264]
          Length = 158

 Score =  153 bits (387), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G D+++ EL+  +  ERP +I AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ ++ A++ID +   +  R+ F ATV L +  +GD   YQIVGD EAD+  GL+
Sbjct: 61  RIAEIESKLSAAQIIDPTAVDADGRVVFAATVELEDLETGDTVKYQIVGDDEADLDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V AP G + YEI+ VL+I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVLYI 158


>gi|157368727|ref|YP_001476716.1| transcription elongation factor GreA [Serratia proteamaculans 568]
 gi|157320491|gb|ABV39588.1| transcription elongation factor GreA [Serratia proteamaculans 568]
          Length = 158

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T  G +K+++EL + +   RP+II  I++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTLFGAEKLREELEYLKGVRRPKIIADIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ M  + R+ FG+TVS++  +S ++  Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITKMPNNGRVIFGSTVSVMNLDSEEEVTYRIVGDDEADFKKNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SP+AR LIGKE+ D++ +  PGG+  YEIL+V ++
Sbjct: 121 SVNSPMARGLIGKEVDDVVVIKTPGGDVDYEILKVDYL 158


>gi|52425016|ref|YP_088153.1| transcription elongation factor GreA [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307068|gb|AAU37568.1| GreA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 158

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G + ++QEL + +   RP IIKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGAELLKQELDFLKTTRRPEIIKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++  ++ID++   +  ++ FGATV LV   + D+  YQIVGD EAD++SGL+
Sbjct: 61  RIQEIESKLSNCQIIDVTKLPNNGKVIFGATVVLVNTENDDEVTYQIVGDDEADIKSGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ + +S+  PGG+  ++I++V +I
Sbjct: 121 SVNSPIARGLIGKEVDETVSIVVPGGKVEFDIIEVNYI 158


>gi|255020830|ref|ZP_05292886.1| Transcription elongation factor GreA [Acidithiobacillus caldus ATCC
           51756]
 gi|254969621|gb|EET27127.1| Transcription elongation factor GreA [Acidithiobacillus caldus ATCC
           51756]
          Length = 158

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 83/159 (52%), Positives = 112/159 (70%), Gaps = 2/159 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M DKIP+T  G  ++++EL+  + ++RP +I+AI+EARA GDLSENAEY AAKE Q   E
Sbjct: 1   MSDKIPMTVVGAQRLREELQRLKSQDRPAVIEAIAEARAKGDLSENAEYDAAKEQQAFIE 60

Query: 61  GRMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+ E+E+ + RA++ID  S  +  RI FGATV L + +      YQIVGD EAD++   
Sbjct: 61  GRIREIEDFLARAQIIDPRSLNTDGRIVFGATVELEDSDGKAI-TYQIVGDAEADIKENK 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SISSP+ARALIGK  GD + VNAPGG + Y IL V ++
Sbjct: 120 ISISSPLARALIGKHEGDSVEVNAPGGIREYSILGVRYL 158


>gi|241205678|ref|YP_002976774.1| transcription elongation factor GreA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859568|gb|ACS57235.1| transcription elongation factor GreA [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 158

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 110/157 (70%), Positives = 137/157 (87%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T  GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR++ELE++  RAEVID++ MSGD+I FGA V L+++++ ++K YQIVGDQEADV++G +
Sbjct: 61  GRISELEDLTARAEVIDLTKMSGDKIKFGAKVKLIDEDTDEEKTYQIVGDQEADVKAGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157


>gi|170747000|ref|YP_001753260.1| transcription elongation factor GreA [Methylobacterium
           radiotolerans JCM 2831]
 gi|170653522|gb|ACB22577.1| transcription elongation factor GreA [Methylobacterium
           radiotolerans JCM 2831]
          Length = 179

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 96/155 (61%), Positives = 127/155 (81%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           DK+P+T +G   +++EL+ RQQ ER RII+AI+EARA GDLSENAEY AAKE Q+ NEGR
Sbjct: 23  DKVPITVRGLAALEEELKHRQQVERQRIIQAIAEARALGDLSENAEYHAAKEAQSHNEGR 82

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELE++I RAEVID++ +SGDRI FGATV LV++++ ++K YQIVG+ EADV+SG VSI
Sbjct: 83  VLELESMIARAEVIDVTKLSGDRIKFGATVKLVDEDTEEEKTYQIVGEPEADVRSGRVSI 142

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +SPIARALIGK +GD + V  PGG K+YE++ V +
Sbjct: 143 TSPIARALIGKGVGDTVEVTTPGGGKSYEVVAVQY 177


>gi|197106054|ref|YP_002131431.1| transcription elongation factor GreA [Phenylobacterium zucineum
           HLK1]
 gi|238690169|sp|B4RH54|GREA_PHEZH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|196479474|gb|ACG79002.1| transcription elongation factor GreA [Phenylobacterium zucineum
           HLK1]
          Length = 157

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 84/157 (53%), Positives = 127/157 (80%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T++G+  + +EL+  +  ERP +I AI+EAR++GDLSENAEY AAKE Q   EG
Sbjct: 1   MEKVPMTAEGYKALDEELKRLKTVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++AE+E+ + RA+VID+S +SG+++ FGATVSL+++++ ++  YQIVG+ EADV++G VS
Sbjct: 61  QIAEIEDKMARAQVIDVSKLSGEQVKFGATVSLIDEDTEEEARYQIVGEHEADVKAGRVS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ++SPIARA+IGKE GD++ VN PGG K YEI +V W+
Sbjct: 121 VTSPIARAIIGKETGDVVEVNTPGGVKAYEITKVEWV 157


>gi|118591047|ref|ZP_01548447.1| transcription elongation factor GreA [Stappia aggregata IAM 12614]
 gi|118436569|gb|EAV43210.1| transcription elongation factor GreA [Stappia aggregata IAM 12614]
          Length = 157

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 92/157 (58%), Positives = 128/157 (81%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+TS G+  +Q EL+ R   ERPRI+ AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MEKVPMTSAGYKMLQDELKERTSVERPRIVDAIAEARAHGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R++ELE+ ++RAE+ID+S +SGD + FGATV+L+++++ ++K Y IVGD E+DV+   VS
Sbjct: 61  RISELEDKLSRAEIIDVSKLSGDIVKFGATVTLIDEDTEEEKKYMIVGDVESDVKHNKVS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK +GD + V APGG ++YEI+ V +I
Sbjct: 121 ISSPIARALIGKSIGDSVEVAAPGGARSYEIVDVRFI 157


>gi|77919210|ref|YP_357025.1| transcription elongation factor GreA [Pelobacter carbinolicus DSM
           2380]
 gi|123770456|sp|Q3A452|GREA_PELCD RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|77545293|gb|ABA88855.1| GreA/GreB family elongation factor [Pelobacter carbinolicus DSM
           2380]
          Length = 158

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 107/158 (67%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   +P+T +G+  +Q EL+   + ERP++++ I+EAR++GDLSENAEY AAK  Q   E
Sbjct: 1   MSQSVPMTEEGYRSLQDELKHLIRVERPKVVQDIAEARSHGDLSENAEYDAAKNRQGFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL + I RAEVI    +  D+I FGA+V+L + ++  +  Y+IVG+ EAD++ G +
Sbjct: 61  GRIKELNDKIARAEVIKPGDVVTDKIVFGASVTLFDVDTDSEVTYKIVGEDEADLKHGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SP+ RALIG  L D + +  P G K YE++ + ++
Sbjct: 121 SVTSPVGRALIGHRLDDEVRIKVPSGLKIYEVVNIAYM 158


>gi|238793013|ref|ZP_04636642.1| Transcription elongation factor greA [Yersinia intermedia ATCC
           29909]
 gi|238727613|gb|EEQ19138.1| Transcription elongation factor greA [Yersinia intermedia ATCC
           29909]
          Length = 158

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T  G +K+++EL + +   RP+II  I+ AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVNGAEKLREELDFLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ M  + R+ FGATV ++  +S +++ Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITRMPNNGRVIFGATVRVLNVDSEEEQQYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D++ +  PGGE  YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILSVDYV 158


>gi|257465495|ref|ZP_05629866.1| transcription elongation factor GreA [Actinobacillus minor 202]
 gi|257451155|gb|EEV25198.1| transcription elongation factor GreA [Actinobacillus minor 202]
          Length = 158

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G + +++EL + +   RP+II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGAELLREELDFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A++ID++ M  + ++ FGATVSLV  ++ ++  Y+IVGD EA+++ GL+
Sbjct: 61  RIQEIEGKLANAQIIDVTKMQNNGKVIFGATVSLVNVDTDEEVTYRIVGDDEANIKEGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKE+ D +S+  PGG+  ++I+ V ++
Sbjct: 121 SVNSPIARGLVGKEVDDSVSITTPGGKVEFDIVDVEYL 158


>gi|126734602|ref|ZP_01750348.1| transcription elongation factor GreA [Roseobacter sp. CCS2]
 gi|126715157|gb|EBA12022.1| transcription elongation factor GreA [Roseobacter sp. CCS2]
          Length = 156

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 82/156 (52%), Positives = 120/156 (76%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DKIP+T  GFDK+  EL+  +  ERP II+AI+EAR +GDLSENAEY +AKE Q+  EG
Sbjct: 1   MDKIPLTQAGFDKLDAELKHLKTVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +I+ A+VID + +S   I FGATV+LV++++ ++K YQIVG+ EAD+++G ++
Sbjct: 61  RVKELEGVISLADVIDPTKLS-GTIKFGATVALVDEDTDEEKTYQIVGEYEADIENGKLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SP++RALIGK+ GD + V  PGG ++YEIL + +
Sbjct: 120 MKSPLSRALIGKDEGDSVDVRTPGGVRSYEILSIAY 155


>gi|158522232|ref|YP_001530102.1| transcription elongation factor GreA [Desulfococcus oleovorans
           Hxd3]
 gi|158511058|gb|ABW68025.1| transcription elongation factor GreA [Desulfococcus oleovorans
           Hxd3]
          Length = 164

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/154 (45%), Positives = 112/154 (72%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           + IP+T +G++K+ QEL   +  ERP  I+AI EARA+GDLSENAE+ AAKE Q   EGR
Sbjct: 11  ETIPITRQGYEKLNQELSRLKAVERPANIRAIEEARAHGDLSENAEFHAAKEKQGFIEGR 70

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + +LE+ +  A +ID ST++ DR  FG T+ L   ++GD+  YQ+VG  E+++ +GL+S+
Sbjct: 71  INDLEHKLASANIIDPSTLTKDRAVFGCTIRLESIDTGDEVEYQLVGPDESNIDNGLISV 130

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +SP+ +A++GK  GD + + APGG+++YE++++ 
Sbjct: 131 TSPLGKAILGKVPGDEVVLQAPGGKRSYELIEIR 164


>gi|254468129|ref|ZP_05081535.1| GreA/GreB family elongation factor [beta proteobacterium KB13]
 gi|207086939|gb|EDZ64222.1| GreA/GreB family elongation factor [beta proteobacterium KB13]
          Length = 159

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 78/159 (49%), Positives = 113/159 (71%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +IP+T  G +++++EL   + ++RP II+AI+EARA GDLSENAEY++AKE Q   E
Sbjct: 1   MAGQIPMTRNGVERLKEELHQLKSQDRPNIIQAIAEARAQGDLSENAEYESAKERQGFIE 60

Query: 61  GRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+AE+E  ++  ++ID S   +  +  FGAT+ L + +      YQIVG+ EAD+++  
Sbjct: 61  GRIAEIEAKLSNVQIIDPSVLNADGKCVFGATIELEDLDEEKSFTYQIVGEDEADIKANK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SISSP+ARALIGKE GD++ V  PGG+KTYEI  V +I
Sbjct: 121 ISISSPLARALIGKEDGDVVEVETPGGQKTYEITNVSYI 159


>gi|52842830|ref|YP_096629.1| transcription elongation factor GreA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54295463|ref|YP_127878.1| transcription elongation factor GreA [Legionella pneumophila str.
           Lens]
 gi|54298613|ref|YP_124982.1| transcription elongation factor GreA [Legionella pneumophila str.
           Paris]
 gi|81367742|sp|Q5WTH5|GREA_LEGPL RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|81369784|sp|Q5X1R6|GREA_LEGPA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|81376728|sp|Q5ZS95|GREA_LEGPH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|52629941|gb|AAU28682.1| transcription elongation factor GreA [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53752398|emb|CAH13830.1| transcription elongation factor GreA [Legionella pneumophila str.
           Paris]
 gi|53755295|emb|CAH16789.1| transcription elongation factor GreA [Legionella pneumophila str.
           Lens]
          Length = 160

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G + ++ EL   +  +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEG
Sbjct: 1   MSKHPMTVEGAEALKAELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ELE  ++ A++IDIS   +  ++ FG+TV++    +G +  Y+IVG+ EAD++   +
Sbjct: 61  RIQELEAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S SSPIARALIGKEL D ++V  PGG   YEI+QV +I
Sbjct: 121 SYSSPIARALIGKELDDAVTVETPGGMVEYEIIQVQYI 158


>gi|308272737|emb|CBX29341.1| Transcription elongation factor greA [uncultured Desulfobacterium
           sp.]
          Length = 155

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 71/154 (46%), Positives = 107/154 (69%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +D+IP+T +G++ +++EL   ++ ERP  IKAI EARA+GDLSENAE+ AAK+ Q   E 
Sbjct: 1   MDRIPITKRGYETLKKELEHLKKVERPGNIKAIEEARAHGDLSENAEFAAAKDRQAYLEC 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ EL   I  A+VID  ++  DR  FG TV L   ++GD   YQ+VG  E+D+  G +S
Sbjct: 61  RIGELSYKIGNADVIDPDSLPKDRAVFGCTVVLENIDTGDTIEYQLVGPDESDIGKGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +SSP+  A+IGK+ G+ I + APGG++ YE++++
Sbjct: 121 VSSPLGMAIIGKKSGEEIVLQAPGGKRFYELVEI 154


>gi|294788006|ref|ZP_06753250.1| transcription elongation factor GreA [Simonsiella muelleri ATCC
           29453]
 gi|294484299|gb|EFG31982.1| transcription elongation factor GreA [Simonsiella muelleri ATCC
           29453]
          Length = 158

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 80/158 (50%), Positives = 119/158 (75%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+TS+G +K++ EL+  +   RP II AI+EAR++GDLSENAEY++AKE Q   EG
Sbjct: 1   MKKIPLTSQGAEKLKNELQHLKSVARPEIIAAIAEARSHGDLSENAEYESAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A++I+ + +  + +I FGATV++++ +S ++  YQIVGD EAD++   +
Sbjct: 61  RIAELESKLSHAQIINPAEIHAEGKIVFGATVTVMDLDSDEESTYQIVGDDEADIKLFKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARA+IGKE GD+  V AP G + YEIL V +I
Sbjct: 121 SVSSPIARAMIGKEEGDVAEVQAPSGIREYEILSVQYI 158


>gi|224372408|ref|YP_002606780.1| transcription elongation factor GreA [Nautilia profundicola AmH]
 gi|254799565|sp|B9L822|GREA_NAUPA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|223589756|gb|ACM93492.1| transcription elongation factor grea transcript cleavage factorgrea
           [Nautilia profundicola AmH]
          Length = 162

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 73/156 (46%), Positives = 107/156 (68%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T  G++K+ +EL + +   RP + K I  AR  GDL ENAEY AAKE Q+  E 
Sbjct: 1   MHKEPMTKYGYEKLSKELEYLKTTARPEVAKEIDSARELGDLKENAEYHAAKEKQSHIER 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AEL +I++RA V+D    + +R+AFG+TV L++ ++ +K+ Y IVG  EA+   GL+S
Sbjct: 61  RIAELSDILSRAVVVDPKEHAHNRVAFGSTVYLIDVDTDEKEKYTIVGAPEANPDKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SP+A+ALIGKE+GD + VN PGG K YEI ++ +
Sbjct: 121 YHSPLAKALIGKEVGDEVEVNLPGGVKVYEIDKICY 156


>gi|56460087|ref|YP_155368.1| transcription elongation factor GreA [Idiomarina loihiensis L2TR]
 gi|56179097|gb|AAV81819.1| Transcription elongation factor GreA [Idiomarina loihiensis L2TR]
          Length = 158

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 114/157 (72%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T  G   ++ EL+  +  ERPRI++AI++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTEHGAQLLRDELKRLKTVERPRIVEAIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++ A++ID++ +  + ++ FG+TV++    + ++  Y+IVGD EAD++S L+
Sbjct: 61  RIQEIESKLSNAQIIDVTKVPNNGKVIFGSTVTVYNTKTDEEVTYKIVGDDEADIKSNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIARALIGKE+ DI +V  P GE  YE++ V +
Sbjct: 121 SVNSPIARALIGKEIDDIATVTTPNGEVEYEVVAVQY 157


>gi|251791044|ref|YP_003005765.1| transcription elongation factor GreA [Dickeya zeae Ech1591]
 gi|247539665|gb|ACT08286.1| transcription elongation factor GreA [Dickeya zeae Ech1591]
          Length = 158

 Score =  153 bits (386), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQFPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M +  R+ FGATV+++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTKMAANGRVIFGATVTVMNLDTEEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++++N PGG   YEIL+V+++
Sbjct: 121 SVNSPIARGLIGKEEDDVVTINTPGGMVEYEILKVVYL 158


>gi|153008990|ref|YP_001370205.1| transcription elongation factor GreA [Ochrobactrum anthropi ATCC
           49188]
 gi|189042242|sp|A6WZH2|GREA_OCHA4 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|151560878|gb|ABS14376.1| transcription elongation factor GreA [Ochrobactrum anthropi ATCC
           49188]
          Length = 157

 Score =  153 bits (386), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 101/157 (64%), Positives = 136/157 (86%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T  GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MEKFPMTPGGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+++ RAE+ID+S +SGDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61  RINELEDLVARAEIIDVSKLSGDRIKFGATVTMIDEDTDEEKVYQIVGDQEADVKEGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK  GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIVGLKFV 157


>gi|323139044|ref|ZP_08074103.1| transcription elongation factor GreA [Methylocystis sp. ATCC 49242]
 gi|322395704|gb|EFX98246.1| transcription elongation factor GreA [Methylocystis sp. ATCC 49242]
          Length = 157

 Score =  153 bits (386), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 98/157 (62%), Positives = 133/157 (84%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK+P+T+ G+  + +ELR RQQE+RPRII+ ISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MDKVPMTAPGYAALAEELRRRQQEDRPRIIQQISEARAHGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AELE+ ++RAEVID+S ++G  I FGATV++V++++ ++K YQIVG+ EADV+SG VS
Sbjct: 61  RIAELEDKLSRAEVIDVSKLTGSTIKFGATVTVVDEDTDEEKAYQIVGETEADVKSGRVS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I+SPIARALIGK +GD + V  PGG K+YEIL+V ++
Sbjct: 121 ITSPIARALIGKTVGDTVEVKTPGGGKSYEILKVAFV 157


>gi|254780440|ref|YP_003064853.1| transcription elongation factor GreA [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040117|gb|ACT56913.1| transcription elongation factor GreA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 158

 Score =  153 bits (386), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE
Sbjct: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV
Sbjct: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI
Sbjct: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158


>gi|226329694|ref|ZP_03805212.1| hypothetical protein PROPEN_03606 [Proteus penneri ATCC 35198]
 gi|225202880|gb|EEG85234.1| hypothetical protein PROPEN_03606 [Proteus penneri ATCC 35198]
          Length = 158

 Score =  153 bits (386), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T  G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTVLGAEKLREELEYLKNVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ M+ + RI FG+TV+L+   + +++ Y+IVGD EA+++  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITKMNNNGRIIFGSTVTLLNVENEEEQTYRIVGDDEANIKENLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKEL D++ +  PGG+  YE+L V +I
Sbjct: 121 SVNSPIARGLIGKELDDVVVITTPGGQVEYEVLNVEYI 158


>gi|300918939|ref|ZP_07135497.1| transcription elongation factor GreA [Escherichia coli MS 115-1]
 gi|300413935|gb|EFJ97245.1| transcription elongation factor GreA [Escherichia coli MS 115-1]
          Length = 158

 Score =  153 bits (386), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ M  + R+ FGATV+ +  +S +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTGLNLDSDEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++ +  PGGE  +E+++V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158


>gi|238755147|ref|ZP_04616493.1| Transcription elongation factor greA [Yersinia ruckeri ATCC 29473]
 gi|238706594|gb|EEP98965.1| Transcription elongation factor greA [Yersinia ruckeri ATCC 29473]
          Length = 158

 Score =  153 bits (386), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G D++++EL + +   RP+II  I++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTIRGADQLREELDYLKGVRRPKIIADIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ M  + R+ F +TV+++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITKMPNNGRVIFASTVTVLNLDTEEQQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D++ +  PGG+  +EIL+V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGDVEFEILKVEYL 158


>gi|254470230|ref|ZP_05083634.1| transcription elongation factor GreA [Pseudovibrio sp. JE062]
 gi|211960541|gb|EEA95737.1| transcription elongation factor GreA [Pseudovibrio sp. JE062]
          Length = 157

 Score =  153 bits (386), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 125/156 (80%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G+  + +EL+ R   ERPRII AISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MEKVPMTPEGYAMLTEELKHRTTGERPRIIAAISEARAHGDLSENAEYHAAKEQQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE ++  AEVID++ +SGD + FGATVSLV++++ ++K Y IVGD EADV+ G +S
Sbjct: 61  RINELEGLLGLAEVIDLTKLSGDTVKFGATVSLVDEDTEEEKKYMIVGDVEADVKRGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ISSPIARALIGK +GD + V APGG + YEI++V +
Sbjct: 121 ISSPIARALIGKSVGDSVEVAAPGGARGYEIVEVEF 156


>gi|162451868|ref|YP_001614235.1| transcription elongation factor GreA [Sorangium cellulosum 'So ce
           56']
 gi|161162450|emb|CAN93755.1| transcription elongation factor GreA [Sorangium cellulosum 'So ce
           56']
          Length = 158

 Score =  153 bits (386), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 72/157 (45%), Positives = 116/157 (73%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +K+P+T +G  ++++E+R  ++ + P+++K I  AR +GDLSENAEY AAKE Q +  
Sbjct: 1   MSEKVPMTPEGQARLREEMRRLKEIDLPQVVKDIGTAREHGDLSENAEYHAAKERQGMIV 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R++ LE  ++RAEVID S +SG ++ FGA V L   ++ +++++QIVG +EAD++ G +
Sbjct: 61  ARISYLEQTLSRAEVIDPSKLSGSKVQFGAKVKLANVDTDEEQSFQIVGPEEADLKVGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+ARAL+G E+G+ + VN P G +TYEIL+V +
Sbjct: 121 SIASPLARALLGHEVGEEVRVNMPAGPRTYEILEVSY 157


>gi|53718991|ref|YP_107977.1| transcription elongation factor GreA [Burkholderia pseudomallei
           K96243]
 gi|53725562|ref|YP_102536.1| transcription elongation factor GreA [Burkholderia mallei ATCC
           23344]
 gi|67639733|ref|ZP_00438570.1| transcription elongation factor GreA [Burkholderia mallei GB8 horse
           4]
 gi|76811771|ref|YP_333015.1| transcription elongation factor GreA [Burkholderia pseudomallei
           1710b]
 gi|121601156|ref|YP_992619.1| transcription elongation factor GreA [Burkholderia mallei SAVP1]
 gi|124384628|ref|YP_001026579.1| transcription elongation factor GreA [Burkholderia mallei NCTC
           10229]
 gi|126439860|ref|YP_001058521.1| transcription elongation factor GreA [Burkholderia pseudomallei
           668]
 gi|126448841|ref|YP_001080136.1| transcription elongation factor GreA [Burkholderia mallei NCTC
           10247]
 gi|126451730|ref|YP_001065781.1| transcription elongation factor GreA [Burkholderia pseudomallei
           1106a]
 gi|134282748|ref|ZP_01769451.1| transcription elongation factor GreA [Burkholderia pseudomallei
           305]
 gi|167002793|ref|ZP_02268583.1| transcription elongation factor GreA [Burkholderia mallei PRL-20]
 gi|167719061|ref|ZP_02402297.1| transcription elongation factor GreA [Burkholderia pseudomallei
           DM98]
 gi|167738059|ref|ZP_02410833.1| transcription elongation factor GreA [Burkholderia pseudomallei 14]
 gi|167815243|ref|ZP_02446923.1| transcription elongation factor GreA [Burkholderia pseudomallei 91]
 gi|167823652|ref|ZP_02455123.1| transcription elongation factor GreA [Burkholderia pseudomallei 9]
 gi|167845196|ref|ZP_02470704.1| transcription elongation factor GreA [Burkholderia pseudomallei
           B7210]
 gi|167893747|ref|ZP_02481149.1| transcription elongation factor GreA [Burkholderia pseudomallei
           7894]
 gi|167902197|ref|ZP_02489402.1| transcription elongation factor GreA [Burkholderia pseudomallei
           NCTC 13177]
 gi|167910439|ref|ZP_02497530.1| transcription elongation factor GreA [Burkholderia pseudomallei
           112]
 gi|167918464|ref|ZP_02505555.1| transcription elongation factor GreA [Burkholderia pseudomallei
           BCC215]
 gi|217423500|ref|ZP_03455001.1| transcription elongation factor GreA [Burkholderia pseudomallei
           576]
 gi|226196142|ref|ZP_03791727.1| transcription elongation factor GreA [Burkholderia pseudomallei
           Pakistan 9]
 gi|237811774|ref|YP_002896225.1| transcription elongation factor GreA [Burkholderia pseudomallei
           MSHR346]
 gi|242317287|ref|ZP_04816303.1| transcription elongation factor GreA [Burkholderia pseudomallei
           1106b]
 gi|254177940|ref|ZP_04884595.1| transcription elongation factor GreA [Burkholderia mallei ATCC
           10399]
 gi|254180206|ref|ZP_04886805.1| transcription elongation factor GreA [Burkholderia pseudomallei
           1655]
 gi|254188375|ref|ZP_04894886.1| transcription elongation factor GreA [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254199447|ref|ZP_04905813.1| transcription elongation factor GreA [Burkholderia mallei FMH]
 gi|254205760|ref|ZP_04912112.1| transcription elongation factor GreA [Burkholderia mallei JHU]
 gi|254259727|ref|ZP_04950781.1| transcription elongation factor GreA [Burkholderia pseudomallei
           1710a]
 gi|254298040|ref|ZP_04965493.1| transcription elongation factor GreA [Burkholderia pseudomallei
           406e]
 gi|254358839|ref|ZP_04975112.1| transcription elongation factor GreA [Burkholderia mallei
           2002721280]
 gi|52209405|emb|CAH35350.1| transcription elongation factor [Burkholderia pseudomallei K96243]
 gi|52428985|gb|AAU49578.1| transcription elongation factor GreA [Burkholderia mallei ATCC
           23344]
 gi|76581224|gb|ABA50699.1| transcription elongation factor GreA [Burkholderia pseudomallei
           1710b]
 gi|121229966|gb|ABM52484.1| transcription elongation factor GreA [Burkholderia mallei SAVP1]
 gi|124292648|gb|ABN01917.1| transcription elongation factor GreA [Burkholderia mallei NCTC
           10229]
 gi|126219353|gb|ABN82859.1| transcription elongation factor GreA [Burkholderia pseudomallei
           668]
 gi|126225372|gb|ABN88912.1| transcription elongation factor GreA [Burkholderia pseudomallei
           1106a]
 gi|126241711|gb|ABO04804.1| transcription elongation factor GreA [Burkholderia mallei NCTC
           10247]
 gi|134245834|gb|EBA45925.1| transcription elongation factor GreA [Burkholderia pseudomallei
           305]
 gi|147749043|gb|EDK56117.1| transcription elongation factor GreA [Burkholderia mallei FMH]
 gi|147753203|gb|EDK60268.1| transcription elongation factor GreA [Burkholderia mallei JHU]
 gi|148027966|gb|EDK85987.1| transcription elongation factor GreA [Burkholderia mallei
           2002721280]
 gi|157807730|gb|EDO84900.1| transcription elongation factor GreA [Burkholderia pseudomallei
           406e]
 gi|157936054|gb|EDO91724.1| transcription elongation factor GreA [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698979|gb|EDP88949.1| transcription elongation factor GreA [Burkholderia mallei ATCC
           10399]
 gi|184210746|gb|EDU07789.1| transcription elongation factor GreA [Burkholderia pseudomallei
           1655]
 gi|217393358|gb|EEC33379.1| transcription elongation factor GreA [Burkholderia pseudomallei
           576]
 gi|225931728|gb|EEH27730.1| transcription elongation factor GreA [Burkholderia pseudomallei
           Pakistan 9]
 gi|237503724|gb|ACQ96042.1| transcription elongation factor GreA [Burkholderia pseudomallei
           MSHR346]
 gi|238520332|gb|EEP83793.1| transcription elongation factor GreA [Burkholderia mallei GB8 horse
           4]
 gi|242140526|gb|EES26928.1| transcription elongation factor GreA [Burkholderia pseudomallei
           1106b]
 gi|243061554|gb|EES43740.1| transcription elongation factor GreA [Burkholderia mallei PRL-20]
 gi|254218416|gb|EET07800.1| transcription elongation factor GreA [Burkholderia pseudomallei
           1710a]
          Length = 158

 Score =  153 bits (386), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G D+++ EL+  +  ERP +I AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGADQLRDELQRLKSVERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ ++ A++ID +T  +  R+ F +TV L +  +G K  YQIVGD EAD+  GL+
Sbjct: 61  RIAEIESKLSAAQIIDPATLDTDGRVVFSSTVELEDLETGAKVKYQIVGDDEADLDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V AP G + YEI+ V ++
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVQFV 158


>gi|237730101|ref|ZP_04560582.1| transcription elongation factor GreA [Citrobacter sp. 30_2]
 gi|283836273|ref|ZP_06356014.1| transcription elongation factor GreA [Citrobacter youngae ATCC
           29220]
 gi|226908707|gb|EEH94625.1| transcription elongation factor GreA [Citrobacter sp. 30_2]
 gi|291067636|gb|EFE05745.1| transcription elongation factor GreA [Citrobacter youngae ATCC
           29220]
          Length = 158

 Score =  153 bits (386), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ M  + R+ FGATV+++  ++ +++ ++IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDVTKMPNNGRVVFGATVTVLNLDNDEEQTWRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++ +  PGGE  YE+ +V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGEVEYEVTKVEYL 158


>gi|307129375|ref|YP_003881391.1| transcription elongation factor [Dickeya dadantii 3937]
 gi|306526904|gb|ADM96834.1| transcription elongation factor [Dickeya dadantii 3937]
          Length = 158

 Score =  153 bits (386), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQFPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M +  R+ FGATV+++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTKMAANGRVIFGATVTVMNVDTEEEQTYRIVGDDEADFKLNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D+++++ PGG   YEIL+V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVAISTPGGVVEYEILKVEYL 158


>gi|261342624|ref|ZP_05970482.1| transcription elongation factor GreA [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315272|gb|EFC54210.1| transcription elongation factor GreA [Enterobacter cancerogenus
           ATCC 35316]
          Length = 158

 Score =  153 bits (386), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VIDI+ M  + R+ FGATV+++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDITKMPNNGRVIFGATVTVLNLDNDEEQKYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++ +  PGGE  YEI++V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVVIRTPGGEVEYEIIKVEYL 158


>gi|254418720|ref|ZP_05032444.1| transcription elongation factor GreA subfamily [Brevundimonas sp.
           BAL3]
 gi|196184897|gb|EDX79873.1| transcription elongation factor GreA subfamily [Brevundimonas sp.
           BAL3]
          Length = 157

 Score =  153 bits (386), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 86/156 (55%), Positives = 124/156 (79%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T++G+  +  +L+  +  ERP +I AISEAR +GDLSENAEY AAKE Q   EG
Sbjct: 1   MEKVPMTAEGYRVLDDQLKQLKSVERPSVIAAISEAREHGDLSENAEYHAAKERQGWIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++AE+E+ I+RA+VID+S +SG ++ FGATV++V++++ D+  YQIVG+ EADV+ G VS
Sbjct: 61  QIAEIEDKISRAQVIDVSKLSGSQVKFGATVTVVDEDTEDEARYQIVGEHEADVKKGKVS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SPIARA+I KE+GD++ VN PGG K YEIL+V W
Sbjct: 121 IASPIARAMISKEVGDVVEVNTPGGVKAYEILKVEW 156


>gi|153004935|ref|YP_001379260.1| transcription elongation factor GreA [Anaeromyxobacter sp. Fw109-5]
 gi|152028508|gb|ABS26276.1| transcription elongation factor GreA [Anaeromyxobacter sp. Fw109-5]
          Length = 168

 Score =  153 bits (386), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 120/158 (75%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +++P+T  G  ++++EL+  +  ERP+I+K I+EAR++GDLSENAEY AAKE Q+  E
Sbjct: 1   MSERVPMTKGGLLRLKEELKRLKNVERPKIVKEIAEARSHGDLSENAEYHAAKEKQSHIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ++E+ I  AEVID+S  +GDR+ FGATVSL E  SGD   Y+IVG+ EAD++ G +
Sbjct: 61  GRILQVEHWIASAEVIDVSKHAGDRVVFGATVSLEESESGDHVTYRIVGELEADLKQGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIG+E GD ++V  PGG+K YEI  + ++
Sbjct: 121 SVTSPIARALIGREEGDAVTVRTPGGQKEYEIQSISFV 158


>gi|238783524|ref|ZP_04627546.1| Transcription elongation factor greA [Yersinia bercovieri ATCC
           43970]
 gi|238797561|ref|ZP_04641058.1| Transcription elongation factor greA [Yersinia mollaretii ATCC
           43969]
 gi|238715579|gb|EEQ07569.1| Transcription elongation factor greA [Yersinia bercovieri ATCC
           43970]
 gi|238718558|gb|EEQ10377.1| Transcription elongation factor greA [Yersinia mollaretii ATCC
           43969]
          Length = 158

 Score =  153 bits (386), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G DK+++EL + +   RP+II  I+ AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGADKLREELDFLKGVRRPKIISDIATAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ M  + R+ FGATV ++  +  +++ Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVDIEEEQQYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D++ +  PGGE  YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILSVDYV 158


>gi|238026780|ref|YP_002911011.1| transcription elongation factor GreA [Burkholderia glumae BGR1]
 gi|237875974|gb|ACR28307.1| Transcription elongation factor GreA [Burkholderia glumae BGR1]
          Length = 158

 Score =  153 bits (386), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 84/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +++++EL+  +  ERP +I AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGAEQLREELQRLKSIERPAVINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A++ID S   +  R+ F ATV L +  SGD   YQIVGD EAD+  GL+
Sbjct: 61  RIAELESKLSAAQIIDPSVLDAEGRVVFAATVELEDLESGDTVKYQIVGDDEADIDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V AP G + YEI+ V +I
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158


>gi|222086556|ref|YP_002545090.1| transcription elongation factor (transcript cleavage factor)
           protein [Agrobacterium radiobacter K84]
 gi|254799543|sp|B9J753|GREA_AGRRK RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|221724004|gb|ACM27160.1| transcription elongation factor (transcript cleavage factor)
           protein [Agrobacterium radiobacter K84]
          Length = 158

 Score =  153 bits (386), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 108/157 (68%), Positives = 135/157 (85%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T  GF K+Q+ELRWRQQEERPRII+AISEARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVEKVPMTQNGFVKLQEELRWRQQEERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAEVID++ MSG +I FGA V L+++++ ++K+YQIVGDQEADV++G +
Sbjct: 61  GRIGELEDLTARAEVIDLTKMSGSKIKFGAKVKLIDEDTEEEKSYQIVGDQEADVKAGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSPIARALIGKE+GD I VNAPGG K YEIL + W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKAYEILSISW 157


>gi|254197614|ref|ZP_04904036.1| transcription elongation factor GreA [Burkholderia pseudomallei
           S13]
 gi|169654355|gb|EDS87048.1| transcription elongation factor GreA [Burkholderia pseudomallei
           S13]
          Length = 158

 Score =  153 bits (386), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G D+++ EL+  +  ERP II AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGADQLRDELQRLKSVERPAIINAIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ ++ A++ID +T  +  R+ F +TV L +  +G K  YQIVGD EAD+  GL+
Sbjct: 61  RIAEIESKLSAAQIIDPATLDTDGRVVFSSTVELEDLETGAKVKYQIVGDDEADLDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V AP G + YEI+ V ++
Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVQFV 158


>gi|291616001|ref|YP_003518743.1| GreA [Pantoea ananatis LMG 20103]
 gi|291151031|gb|ADD75615.1| GreA [Pantoea ananatis LMG 20103]
 gi|327396252|dbj|BAK13674.1| transcription elongation factor GreA [Pantoea ananatis AJ13355]
          Length = 158

 Score =  153 bits (385), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T +G +++++EL   +  +RPRII +I+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTLRGAERLREELHELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M    R+ FGATV+++  ++ ++  Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVTVLNVDTDEEFTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SP+AR L+GKE  D+  +  PGG+  YEIL+V +I
Sbjct: 121 SVNSPMARGLVGKEADDVAIIKTPGGDVEYEILKVEYI 158


>gi|148358641|ref|YP_001249848.1| transcription elongation factor GreA [Legionella pneumophila str.
           Corby]
 gi|166200670|sp|A5IAV2|GREA_LEGPC RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|148280414|gb|ABQ54502.1| transcription elongation factor GreA [Legionella pneumophila str.
           Corby]
          Length = 160

 Score =  153 bits (385), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G + +++EL   +  +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEG
Sbjct: 1   MSKHPMTVEGAEALKEELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ELE  ++ A++IDIS   +  ++ FG+TV++    +G +  Y+IVG+ EAD++   +
Sbjct: 61  RIQELEAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S SSPIARALIGKEL D ++V  PGG   YEI+QV +I
Sbjct: 121 SYSSPIARALIGKELDDAVTVETPGGMVEYEIIQVQYI 158


>gi|209550295|ref|YP_002282212.1| transcription elongation factor GreA [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|238058236|sp|B5ZXG2|GREA_RHILW RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|209536051|gb|ACI55986.1| transcription elongation factor GreA [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 158

 Score =  153 bits (385), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 111/157 (70%), Positives = 137/157 (87%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T  GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR++ELE++  RAEVID++ MSGD+I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 61  GRISELEDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157


>gi|15965326|ref|NP_385679.1| transcription elongation factor GreA [Sinorhizobium meliloti 1021]
 gi|150396472|ref|YP_001326939.1| transcription elongation factor GreA [Sinorhizobium medicae WSM419]
 gi|307307952|ref|ZP_07587677.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
 gi|307317183|ref|ZP_07596624.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
 gi|7387719|sp|P56894|GREA_RHIME RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|189042248|sp|A6U8X4|GREA_SINMW RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|6224910|gb|AAF06007.1|AF193023_1 GreA [Sinorhizobium meliloti]
 gi|15074506|emb|CAC46152.1| Transcription elongation factor [Sinorhizobium meliloti 1021]
 gi|51451367|gb|AAU03120.1| GreA [Sinorhizobium meliloti]
 gi|150027987|gb|ABR60104.1| transcription elongation factor GreA [Sinorhizobium medicae WSM419]
 gi|306897271|gb|EFN28016.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
 gi|306901568|gb|EFN32171.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
          Length = 158

 Score =  153 bits (385), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 111/157 (70%), Positives = 134/157 (85%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MVDK+P+T  GF  +Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVDKVPMTQGGFVNLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR++ELE++I RAEVID+S MSG +I FGA V LV++++ ++K YQIVGDQEADV+ G +
Sbjct: 61  GRISELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKQGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSPIARALIGKE+GD I VNAPGG K YEIL V W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW 157


>gi|198282924|ref|YP_002219245.1| transcription elongation factor GreA [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665891|ref|YP_002425127.1| transcription elongation factor GreA [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247445|gb|ACH83038.1| transcription elongation factor GreA [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518104|gb|ACK78690.1| transcription elongation factor GreA [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 158

 Score =  153 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/158 (50%), Positives = 104/158 (65%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M DKIP+T  G  +++ EL   +  +RP +I+AI+EARA GDLSENAEY AAKE Q   E
Sbjct: 1   MNDKIPMTVIGAQRLRDELHRLKTVDRPTVIEAIAEARAKGDLSENAEYDAAKEQQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ E+E+ + RA+VID   ++       A    +E   G++  YQIVGD EAD++   +
Sbjct: 61  GRIREVEDYLARAQVIDPKQLNTGGKIVFAATVELEDAEGNEVTYQIVGDAEADLKENKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD + V APGG + Y IL V +I
Sbjct: 121 SISSPIARALIGKHEGDPVEVRAPGGTREYTILAVRYI 158


>gi|209517189|ref|ZP_03266034.1| transcription elongation factor GreA [Burkholderia sp. H160]
 gi|209502325|gb|EEA02336.1| transcription elongation factor GreA [Burkholderia sp. H160]
          Length = 158

 Score =  153 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 85/158 (53%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G D ++ EL+  +  ERP +I +I+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTKRGADMLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ +  A+VID S   +  R+ FGAT+ L +  SG    YQIVGD EAD+  GL+
Sbjct: 61  RIAEIESKLAGAQVIDPSQVEADGRVVFGATLELEDLESGASVKYQIVGDDEADIDHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+ SV APGG + YEI+ V ++
Sbjct: 121 SISSPIARALIGKSEGDVASVQAPGGIREYEIIAVSYV 158


>gi|114562155|ref|YP_749668.1| transcription elongation factor GreA [Shewanella frigidimarina
           NCIMB 400]
 gi|114333448|gb|ABI70830.1| transcription elongation factor GreA [Shewanella frigidimarina
           NCIMB 400]
          Length = 158

 Score =  153 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 109/158 (68%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T  G D++++EL   + + RP+I +AI+ AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MSKVPMTVVGADQLRKELELLKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++ID++ +    R+ FG TV+++  ++  +  Y+IVGD EAD++  L+
Sbjct: 61  RIRDIEGKLSNAQIIDVTKLENTGRVIFGTTVTILNIDTDAEVTYRIVGDDEADIKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK  GD +S+  PGG   YEI++V ++
Sbjct: 121 SVNSPIARGLIGKSEGDEVSITTPGGLTDYEIVKVQYL 158


>gi|159045616|ref|YP_001534410.1| transcription elongation factor GreA [Dinoroseobacter shibae DFL
           12]
 gi|157913376|gb|ABV94809.1| transcription elongation factor GreA [Dinoroseobacter shibae DFL
           12]
          Length = 171

 Score =  153 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/156 (51%), Positives = 121/156 (77%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T +G   +  EL+  +  ERP +I+AI+EAR +GDLSENAEY AA+E Q+  EG
Sbjct: 16  MEKIPMTRRGHSALDTELKQLKSVERPAVIRAIAEAREHGDLSENAEYHAAREKQSFIEG 75

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +++RA+VID +T+S   + FGATV++V++++ ++K YQIVG+ EAD++ GL++
Sbjct: 76  RVKELEALLSRAQVIDPATLS-GAVKFGATVTIVDEDTDEEKTYQIVGEAEADIEKGLLN 134

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SPIARALIGKE GD + V  PGG K+YEIL++ +
Sbjct: 135 LKSPIARALIGKEEGDSVEVRTPGGTKSYEILEIAY 170


>gi|254719540|ref|ZP_05181351.1| transcription elongation factor GreA [Brucella sp. 83/13]
 gi|265984548|ref|ZP_06097283.1| transcription elongation factor grea [Brucella sp. 83/13]
 gi|306838479|ref|ZP_07471320.1| transcription elongation factor GreA [Brucella sp. NF 2653]
 gi|264663140|gb|EEZ33401.1| transcription elongation factor grea [Brucella sp. 83/13]
 gi|306406443|gb|EFM62681.1| transcription elongation factor GreA [Brucella sp. NF 2653]
          Length = 157

 Score =  153 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 101/157 (64%), Positives = 137/157 (87%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MEKFPMTPRGFEKLKEELRWRQQTERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61  RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK  GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 157


>gi|288940454|ref|YP_003442694.1| transcription elongation factor GreA [Allochromatium vinosum DSM
           180]
 gi|288895826|gb|ADC61662.1| transcription elongation factor GreA [Allochromatium vinosum DSM
           180]
          Length = 158

 Score =  153 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 122/158 (77%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T++G +K+++EL   ++ ERPRII+AI+EARA+GDL ENAEY AA+E Q   EG
Sbjct: 1   MNKVPLTARGAEKLREELEQLKRVERPRIIEAIAEARAHGDLKENAEYHAAREQQGFVEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++ID++TM  + ++ FGATV ++E  + ++  YQIVG+ EAD++ GL+
Sbjct: 61  RIKDIEGKLSHAQIIDVTTMPHNGKVIFGATVKVLELETDEEHCYQIVGEDEADLKQGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SP+AR LIGK  GD+ S+ APGG + +EIL+V ++
Sbjct: 121 SVGSPLARCLIGKAEGDVASLQAPGGLREFEILEVQYV 158


>gi|326559681|gb|EGE10092.1| transcription elongation factor GreA [Moraxella catarrhalis
           46P47B1]
          Length = 158

 Score =  153 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 102/157 (64%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   ++ EL+  +  ERPRI  AI+EAR +GDL ENAEY AA+E Q   E 
Sbjct: 1   MQRYPMTPEGHKALEDELKQLKTVERPRITTAIAEAREHGDLKENAEYHAAREQQGFCEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++ID + +  + R+ FG TV L   + G ++ Y+IVGD EAD + G +
Sbjct: 61  RIRDIEAKLSGAQIIDPAKLPKEGRVVFGVTVVLENMDDGARRRYKIVGDDEADFKVGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIAR LIGK  GD   +  P G   +EIL+V++
Sbjct: 121 SVNSPIARGLIGKSEGDEAKIQTPSGLAEFEILEVIY 157


>gi|296113338|ref|YP_003627276.1| transcription elongation factor GreA [Moraxella catarrhalis RH4]
 gi|295921032|gb|ADG61383.1| transcription elongation factor GreA [Moraxella catarrhalis RH4]
 gi|326560322|gb|EGE10710.1| transcription elongation factor GreA [Moraxella catarrhalis 7169]
 gi|326562019|gb|EGE12349.1| transcription elongation factor GreA [Moraxella catarrhalis
           103P14B1]
 gi|326563561|gb|EGE13820.1| transcription elongation factor GreA [Moraxella catarrhalis
           12P80B1]
 gi|326566359|gb|EGE16509.1| transcription elongation factor GreA [Moraxella catarrhalis BC1]
 gi|326570169|gb|EGE20214.1| transcription elongation factor GreA [Moraxella catarrhalis BC8]
 gi|326570907|gb|EGE20931.1| transcription elongation factor GreA [Moraxella catarrhalis BC7]
 gi|326574514|gb|EGE24456.1| transcription elongation factor GreA [Moraxella catarrhalis
           101P30B1]
 gi|326575898|gb|EGE25821.1| transcription elongation factor GreA [Moraxella catarrhalis CO72]
 gi|326576362|gb|EGE26271.1| transcription elongation factor GreA [Moraxella catarrhalis O35E]
          Length = 158

 Score =  153 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 102/157 (64%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   ++ EL+  +  ERPRI  AI+EAR +GDL ENAEY AA+E Q   E 
Sbjct: 1   MQRYPMTPEGHKALEDELKQLKTVERPRITTAIAEAREHGDLKENAEYHAAREQQGFCEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++ID + +  + R+ FG TV L   + G K+ Y+IVGD EAD + G +
Sbjct: 61  RIRDIEAKLSGAQIIDPAKLPKEGRVVFGVTVVLENMDDGAKRRYKIVGDDEADFKVGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIAR LIGK  GD   +  P G   +EIL+V++
Sbjct: 121 SVNSPIARGLIGKSEGDEAKIQTPSGLAEFEILEVIY 157


>gi|290473438|ref|YP_003466305.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Xenorhabdus bovienii SS-2004]
 gi|289172738|emb|CBJ79509.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Xenorhabdus bovienii SS-2004]
          Length = 158

 Score =  153 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G DK+++EL   +   RP+II AI++ARA+GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGADKLREELENLKNVRRPKIITAIADARAHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ M  + R+ FGATV+++   S +++ Y+IVGD EA+++  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITKMINNGRVIFGATVTVLNMGSDEEQTYRIVGDDEANIKENLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D+  ++ PGG+  YE+L V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVAVISTPGGKVEYEVLNVEYL 158


>gi|116253164|ref|YP_769002.1| transcription elongation factor GreA [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|7387717|sp|O68546|GREA_RHILV RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|123081835|sp|Q1MDR7|GREA_RHIL3 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|2944085|gb|AAC05214.1| transcription elongation factor homolog [Rhizobium leguminosarum]
 gi|115257812|emb|CAK08910.1| putative transcription elongation factor [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 158

 Score =  153 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 110/157 (70%), Positives = 137/157 (87%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T  GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVEKVPMTPGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR++ELE++  RAEVID++ MSGD+I FGA V L+++++ ++K YQIVGDQEADV++G +
Sbjct: 61  GRISELEDLTARAEVIDLTKMSGDKIKFGAKVKLIDEDTEEEKTYQIVGDQEADVKAGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157


>gi|241763933|ref|ZP_04761975.1| transcription elongation factor GreA [Acidovorax delafieldii 2AN]
 gi|241366756|gb|EER61197.1| transcription elongation factor GreA [Acidovorax delafieldii 2AN]
          Length = 158

 Score =  153 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 82/157 (52%), Positives = 113/157 (71%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL   +  ERP +I AI+EARA GDLSENA+Y AAK+ Q   EG
Sbjct: 1   MATIPITKRGAEKLKEELHRLKTVERPAVITAIAEARAQGDLSENADYDAAKDRQGFIEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID  S   G ++ FGATV L +++SGD   YQIVG+ EAD++ GL+
Sbjct: 61  RIQEIEGKLSVAQVIDPGSVDGGGKVVFGATVELEDEDSGDTVTYQIVGEDEADLKHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +ISSPIARALIGKE GD   V APGG + YE++ V +
Sbjct: 121 NISSPIARALIGKEEGDTAEVQAPGGVRRYEVVAVRY 157


>gi|271499165|ref|YP_003332190.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
 gi|270342720|gb|ACZ75485.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
          Length = 158

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQFPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M +  R+ FGA V+++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTKMAANGRVIFGAMVTVMNLDTEEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D+++++ PGG   YEIL+V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVTISTPGGVVEYEILKVEYL 158


>gi|301025974|ref|ZP_07189457.1| transcription elongation factor GreA [Escherichia coli MS 196-1]
 gi|299879900|gb|EFI88111.1| transcription elongation factor GreA [Escherichia coli MS 196-1]
          Length = 158

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ M  + R+ F ATV+++  +S +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDVTKMPNNGRVIFCATVTVLNLDSDEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++ +  PGGE  +E+++V ++
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 158


>gi|319408896|emb|CBI82553.1| transcription elongation factor GreA [Bartonella schoenbuchensis
           R1]
          Length = 157

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 104/157 (66%), Positives = 136/157 (86%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1   MEKVPMTTTGFENLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+ I RAEVID+S +SGDRI FGAT+ L+ +++ +KK YQIVGDQEADV++G +S
Sbjct: 61  RINELEDYIARAEVIDVSRLSGDRIKFGATIKLLNEDTEEKKVYQIVGDQEADVKTGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK+ GD+I VNAPGG   YEI+++ +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKIQYI 157


>gi|17986791|ref|NP_539425.1| transcription elongation factor GreA [Brucella melitensis bv. 1
           str. 16M]
 gi|23502373|ref|NP_698500.1| transcription elongation factor GreA [Brucella suis 1330]
 gi|62290393|ref|YP_222186.1| transcription elongation factor GreA [Brucella abortus bv. 1 str.
           9-941]
 gi|82700315|ref|YP_414889.1| transcription elongation factor GreA [Brucella melitensis biovar
           Abortus 2308]
 gi|161619451|ref|YP_001593338.1| transcription elongation factor GreA [Brucella canis ATCC 23365]
 gi|163843758|ref|YP_001628162.1| transcription elongation factor GreA [Brucella suis ATCC 23445]
 gi|189024618|ref|YP_001935386.1| transcription elongation factor GreA [Brucella abortus S19]
 gi|225852983|ref|YP_002733216.1| transcription elongation factor GreA [Brucella melitensis ATCC
           23457]
 gi|254689690|ref|ZP_05152944.1| transcription elongation factor GreA [Brucella abortus bv. 6 str.
           870]
 gi|254694180|ref|ZP_05156008.1| transcription elongation factor GreA [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697833|ref|ZP_05159661.1| transcription elongation factor GreA [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254702221|ref|ZP_05164049.1| transcription elongation factor GreA [Brucella suis bv. 5 str. 513]
 gi|254704756|ref|ZP_05166584.1| transcription elongation factor GreA [Brucella suis bv. 3 str. 686]
 gi|254730722|ref|ZP_05189300.1| transcription elongation factor GreA [Brucella abortus bv. 4 str.
           292]
 gi|256045124|ref|ZP_05448025.1| transcription elongation factor GreA [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256061556|ref|ZP_05451698.1| transcription elongation factor GreA [Brucella neotomae 5K33]
 gi|256114061|ref|ZP_05454831.1| transcription elongation factor GreA [Brucella melitensis bv. 3
           str. Ether]
 gi|256257941|ref|ZP_05463477.1| transcription elongation factor GreA [Brucella abortus bv. 9 str.
           C68]
 gi|256263538|ref|ZP_05466070.1| transcription elongation factor grea [Brucella melitensis bv. 2
           str. 63/9]
 gi|256369920|ref|YP_003107431.1| transcription elongation factor GreA [Brucella microti CCM 4915]
 gi|260546930|ref|ZP_05822669.1| transcription elongation factor grea [Brucella abortus NCTC 8038]
 gi|260565274|ref|ZP_05835758.1| transcription elongation factor grea [Brucella melitensis bv. 1
           str. 16M]
 gi|260565998|ref|ZP_05836468.1| transcription elongation factor greA [Brucella suis bv. 4 str. 40]
 gi|260755224|ref|ZP_05867572.1| transcription elongation factor grea [Brucella abortus bv. 6 str.
           870]
 gi|260758444|ref|ZP_05870792.1| transcription elongation factor grea [Brucella abortus bv. 4 str.
           292]
 gi|260762270|ref|ZP_05874613.1| transcription elongation factor grea [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260884238|ref|ZP_05895852.1| transcription elongation factor grea [Brucella abortus bv. 9 str.
           C68]
 gi|261214487|ref|ZP_05928768.1| transcription elongation factor grea [Brucella abortus bv. 3 str.
           Tulya]
 gi|261325565|ref|ZP_05964762.1| transcription elongation factor grea [Brucella neotomae 5K33]
 gi|261752795|ref|ZP_05996504.1| transcription elongation factor grea [Brucella suis bv. 5 str. 513]
 gi|261755454|ref|ZP_05999163.1| transcription elongation factor grea [Brucella suis bv. 3 str. 686]
 gi|265991559|ref|ZP_06104116.1| transcription elongation factor grea [Brucella melitensis bv. 1
           str. Rev.1]
 gi|265995396|ref|ZP_06107953.1| transcription elongation factor grea [Brucella melitensis bv. 3
           str. Ether]
 gi|294852821|ref|ZP_06793494.1| transcription elongation factor greA [Brucella sp. NVSL 07-0026]
 gi|297248778|ref|ZP_06932496.1| transcription elongation factor greA [Brucella abortus bv. 5 str.
           B3196]
 gi|306843149|ref|ZP_07475769.1| transcription elongation factor GreA [Brucella sp. BO2]
 gi|306844505|ref|ZP_07477094.1| transcription elongation factor GreA [Brucella sp. BO1]
 gi|54037214|sp|P64272|GREA_BRUSU RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|54041322|sp|P64271|GREA_BRUME RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|75496478|sp|Q57C09|GREA_BRUAB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|123768486|sp|Q2YRN8|GREA_BRUA2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|189042237|sp|A9M6H1|GREA_BRUC2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|189042238|sp|B0CHU1|GREA_BRUSI RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|238689389|sp|B2S6W5|GREA_BRUA1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799548|sp|C0REE0|GREA_BRUMB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|17982422|gb|AAL51689.1| transcription elongation factor grea [Brucella melitensis bv. 1
           str. 16M]
 gi|23348356|gb|AAN30415.1| transcription elongation factor GreA [Brucella suis 1330]
 gi|62196525|gb|AAX74825.1| GreA, transcription elongation factor [Brucella abortus bv. 1 str.
           9-941]
 gi|82616416|emb|CAJ11479.1| Prokaryotic transcription elongation factor GreA/GreB:Prokaryotic
           transcription elongation factor GreA [Brucella
           melitensis biovar Abortus 2308]
 gi|161336262|gb|ABX62567.1| transcription elongation factor GreA [Brucella canis ATCC 23365]
 gi|163674481|gb|ABY38592.1| transcription elongation factor GreA [Brucella suis ATCC 23445]
 gi|189020190|gb|ACD72912.1| transcription elongation factor GreA [Brucella abortus S19]
 gi|225641348|gb|ACO01262.1| transcription elongation factor GreA [Brucella melitensis ATCC
           23457]
 gi|256000083|gb|ACU48482.1| transcription elongation factor GreA [Brucella microti CCM 4915]
 gi|260095980|gb|EEW79857.1| transcription elongation factor grea [Brucella abortus NCTC 8038]
 gi|260151342|gb|EEW86436.1| transcription elongation factor grea [Brucella melitensis bv. 1
           str. 16M]
 gi|260155516|gb|EEW90596.1| transcription elongation factor greA [Brucella suis bv. 4 str. 40]
 gi|260668762|gb|EEX55702.1| transcription elongation factor grea [Brucella abortus bv. 4 str.
           292]
 gi|260672702|gb|EEX59523.1| transcription elongation factor grea [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260675332|gb|EEX62153.1| transcription elongation factor grea [Brucella abortus bv. 6 str.
           870]
 gi|260873766|gb|EEX80835.1| transcription elongation factor grea [Brucella abortus bv. 9 str.
           C68]
 gi|260916094|gb|EEX82955.1| transcription elongation factor grea [Brucella abortus bv. 3 str.
           Tulya]
 gi|261301545|gb|EEY05042.1| transcription elongation factor grea [Brucella neotomae 5K33]
 gi|261742548|gb|EEY30474.1| transcription elongation factor grea [Brucella suis bv. 5 str. 513]
 gi|261745207|gb|EEY33133.1| transcription elongation factor grea [Brucella suis bv. 3 str. 686]
 gi|262766509|gb|EEZ12298.1| transcription elongation factor grea [Brucella melitensis bv. 3
           str. Ether]
 gi|263002343|gb|EEZ14918.1| transcription elongation factor grea [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263093566|gb|EEZ17591.1| transcription elongation factor grea [Brucella melitensis bv. 2
           str. 63/9]
 gi|294821410|gb|EFG38409.1| transcription elongation factor greA [Brucella sp. NVSL 07-0026]
 gi|297175947|gb|EFH35294.1| transcription elongation factor greA [Brucella abortus bv. 5 str.
           B3196]
 gi|306275116|gb|EFM56872.1| transcription elongation factor GreA [Brucella sp. BO1]
 gi|306286672|gb|EFM58230.1| transcription elongation factor GreA [Brucella sp. BO2]
 gi|326539229|gb|ADZ87444.1| transcription elongation factor GreA [Brucella melitensis M5-90]
          Length = 157

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 101/157 (64%), Positives = 137/157 (87%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61  RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK  GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 157


>gi|121602520|ref|YP_989263.1| transcription elongation factor GreA [Bartonella bacilliformis
           KC583]
 gi|189042235|sp|A1UTG0|GREA_BARBK RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|120614697|gb|ABM45298.1| transcription elongation factor GreA [Bartonella bacilliformis
           KC583]
          Length = 157

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 104/157 (66%), Positives = 135/157 (85%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1   MEKVPMTTAGFETLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSYNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+ I RAEVID+S +SG++I FGATV L+ +++ +KK YQIVGDQEADV+ G +S
Sbjct: 61  RINELEDYIARAEVIDVSRLSGNQIKFGATVKLLNEDTEEKKVYQIVGDQEADVKIGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGKE GD+I VNAPGG   YEI+++ +I
Sbjct: 121 ISSPIARALIGKEEGDVIEVNAPGGAHNYEIIKIQYI 157


>gi|163794418|ref|ZP_02188389.1| GreA/GreB family elongation factor [alpha proteobacterium BAL199]
 gi|159180142|gb|EDP64665.1| GreA/GreB family elongation factor [alpha proteobacterium BAL199]
          Length = 157

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/154 (51%), Positives = 115/154 (74%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK+P+T+ GF ++Q ELR  +  ERP +IKAI+EAR +GDLSENAEY AA++ Q+  EG
Sbjct: 1   MDKVPITAIGFQRLQDELRQLKSVERPAVIKAIAEAREHGDLSENAEYHAARDRQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AELE++I+R EVIDI  ++GD + FG TV + ++++ ++  Y IVG  EAD+  G++S
Sbjct: 61  RVAELEDVISRCEVIDIKKLTGDTVTFGVTVEVADEDTDEETKYTIVGPYEADLSKGMIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +SPIARALIGK +GD + V  P G K+ EIL +
Sbjct: 121 TASPIARALIGKRVGDSVEVATPRGAKSLEILSI 154


>gi|241663320|ref|YP_002981680.1| transcription elongation factor GreA [Ralstonia pickettii 12D]
 gi|309782465|ref|ZP_07677189.1| transcription elongation factor GreA [Ralstonia sp. 5_7_47FAA]
 gi|240865347|gb|ACS63008.1| transcription elongation factor GreA [Ralstonia pickettii 12D]
 gi|308918802|gb|EFP64475.1| transcription elongation factor GreA [Ralstonia sp. 5_7_47FAA]
          Length = 158

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/158 (50%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G + +++EL   + +ERP ++ AI+EARA GDLSENA+Y AAKE Q   EG
Sbjct: 1   MSTIPITKRGAEMLKEELHRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++ A++ID  S  +  R+ FGAT+ L + +SG    YQIVGD EAD+++G +
Sbjct: 61  RIQEIESKLSAAQIIDPASLDADGRVVFGATIDLEDLDSGKPVTYQIVGDDEADLETGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+ +V APGGE+ YE+L V ++
Sbjct: 121 SISSPIARALIGKFEGDVATVVAPGGEREYEVLAVKYL 158


>gi|259415108|ref|ZP_05739030.1| transcription elongation factor GreA [Silicibacter sp. TrichCH4B]
 gi|259349018|gb|EEW60772.1| transcription elongation factor GreA [Silicibacter sp. TrichCH4B]
          Length = 156

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/156 (50%), Positives = 121/156 (77%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DKIP+T +GF  ++ EL+  +  ERP II+AI+EAR  GDLSENAEY +A+E Q+  EG
Sbjct: 1   MDKIPMTPQGFHALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +++ A+VID + +S   I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61  RIKELEGVLSLADVIDPTKLS-GAIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SPIARALIGKE GD + V  PGG++ YEIL++++
Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGDRAYEILKIIY 155


>gi|332160070|ref|YP_004296647.1| transcription elongation factor GreA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325664300|gb|ADZ40944.1| transcription elongation factor GreA [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862039|emb|CBX72205.1| transcription elongation factor greA [Yersinia enterocolitica
           W22703]
          Length = 158

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T  G +K+++EL + +   RP+II  I+ AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVNGAEKLREELDYLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ M  + R+ FGATV ++   S +++ Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVVSEEEQQYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D++ +  PGGE  YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILNVDYV 158


>gi|319952614|ref|YP_004163881.1| transcription elongation factor grea [Cellulophaga algicola DSM
           14237]
 gi|319421274|gb|ADV48383.1| transcription elongation factor GreA [Cellulophaga algicola DSM
           14237]
          Length = 158

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 97/156 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +K   T +G  K++ EL   +  ERP+  + I+EAR  GDLSENAEY AAKE Q L E
Sbjct: 1   MSNKSYYTPEGLKKLRDELNQLKDIERPKASRDIAEARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+++LE   + A +ID S +   ++   +TV L  +N+G +  Y +V + EAD+++G +
Sbjct: 61  LRISKLEETYSNARLIDESQLDTSKVLVLSTVKLKNQNNGMEMKYTLVAESEADLKTGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S++SPI + L+GK++G+   +  P G    EIL++ 
Sbjct: 121 SVNSPIGKGLLGKKVGESAEITIPNGVLKLEILEIT 156


>gi|163867955|ref|YP_001609159.1| transcription elongation factor GreA [Bartonella tribocorum CIP
           105476]
 gi|189042236|sp|A9IRC3|GREA_BART1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|161017606|emb|CAK01164.1| transcription elongation factor GreA [Bartonella tribocorum CIP
           105476]
          Length = 157

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 104/157 (66%), Positives = 136/157 (86%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1   MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+ I RAEVID+S +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV+ G +S
Sbjct: 61  RINELEDYIARAEVIDVSRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKIGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK+ GD+I VNAPGG   YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157


>gi|300718587|ref|YP_003743390.1| transcription elongation factor [Erwinia billingiae Eb661]
 gi|299064423|emb|CAX61543.1| Transcription elongation factor [Erwinia billingiae Eb661]
          Length = 158

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T +G DK+++EL   +  +RPRII +I++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTLRGADKLREELEELKTIKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M+   R+ FG+TV ++  ++ ++  Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTKMNANGRVIFGSTVKVLNLDTDEESTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SP+AR LIGKE+ D+  V  PGG+  YEIL++ ++
Sbjct: 121 SVNSPMARGLIGKEVDDVTIVKTPGGDVEYEILKIEYL 158


>gi|253700924|ref|YP_003022113.1| transcription elongation factor GreA [Geobacter sp. M21]
 gi|251775774|gb|ACT18355.1| transcription elongation factor GreA [Geobacter sp. M21]
          Length = 158

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 111/157 (70%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   +P+T + ++ +Q++L+   +EERP++I+ I+EARA+GDLSENAEY AAK  Q   E
Sbjct: 1   MSQTVPLTKESYEALQEDLKRLIKEERPKVIQDIAEARAHGDLSENAEYDAAKNRQGFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL + + RA V+D+S +  D++ FGATV++ +  + ++  Y+IVG+ EAD++   +
Sbjct: 61  GRILELGDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEELTYKIVGEDEADIKLCKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S +SP+ +ALIG +L D + V+ P G K YEI+++ +
Sbjct: 121 SCTSPVGKALIGHKLDDSVRVSVPSGVKEYEIIEIRY 157


>gi|239832384|ref|ZP_04680713.1| transcription elongation factor GreA [Ochrobactrum intermedium LMG
           3301]
 gi|239824651|gb|EEQ96219.1| transcription elongation factor GreA [Ochrobactrum intermedium LMG
           3301]
          Length = 157

 Score =  152 bits (384), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 102/157 (64%), Positives = 136/157 (86%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T  GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MEKFPMTPGGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+++ RAEVID+S +SGDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61  RINELEDLVARAEVIDVSKLSGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK  GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ISSPIARALIGKGEGDTIEVNAPGGSRSYEIVGLKFV 157


>gi|315497713|ref|YP_004086517.1| transcription elongation factor grea [Asticcacaulis excentricus CB
           48]
 gi|315415725|gb|ADU12366.1| transcription elongation factor GreA [Asticcacaulis excentricus CB
           48]
          Length = 152

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/152 (53%), Positives = 121/152 (79%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G+  +  EL+  +  ERP +I AI+EAR++GDLSENAEY AAKE Q   EG++AE+
Sbjct: 1   MTVAGYQSLDDELKRLKSVERPAVIAAIAEARSHGDLSENAEYHAAKERQGWIEGQIAEI 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E+ I+RA+VID+S +SG++I FGATV++V++++ ++  YQ+VG+ EADV++G +S+SSP+
Sbjct: 61  EDKISRAQVIDVSKLSGNQIKFGATVTVVDEDTEEEGRYQVVGEHEADVKAGRISLSSPL 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +RA+IGKE+GD++ VN P G K YEIL+V WI
Sbjct: 121 SRAMIGKEVGDVVEVNTPAGVKAYEILKVEWI 152


>gi|88705675|ref|ZP_01103385.1| Transcription elongation factor greA [Congregibacter litoralis
           KT71]
 gi|88700188|gb|EAQ97297.1| Transcription elongation factor greA [Congregibacter litoralis
           KT71]
          Length = 158

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T++G   +++EL   ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q+  EG
Sbjct: 1   MSKVPMTAQGEKALREELEQLKKVDRPRIVQAIAEAREHGDLKENAEYHAAREQQSFAEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ +    ++ FG TV L+   S D   Y+IVGD EAD +  L+
Sbjct: 61  RIMDIEGKLSHAQVIDVTAIPPTGKVIFGVTVDLINVESDDTVTYRIVGDDEADAKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIGKE GD++ V APGG++ YEI QV  I
Sbjct: 121 SVNSPIARALIGKEEGDVVVVRAPGGDREYEIDQVRHI 158


>gi|14041681|emb|CAC38777.1| GreA protein [Rhizobium tropici]
          Length = 158

 Score =  152 bits (384), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 108/157 (68%), Positives = 135/157 (85%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T  GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVEKVPMTQNGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR++ELE++  RAEVID++ MSG +I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 61  GRISELEDLTARAEVIDLTKMSGSKIKFGAKVKLVDEDTEEEKIYQIVGDQEADVKAGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSPIARALIGKE+GD I VNAPGG K YEIL + W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKGYEILSITW 157


>gi|322419242|ref|YP_004198465.1| transcription elongation factor GreA [Geobacter sp. M18]
 gi|320125629|gb|ADW13189.1| transcription elongation factor GreA [Geobacter sp. M18]
          Length = 158

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 114/157 (72%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   +P+T + ++ +Q++L+   +EERP++I+ I+EAR++GDLSENAEY AAK  Q   E
Sbjct: 1   MSQTVPLTKESYEALQEDLKRLIKEERPKVIQDIAEARSHGDLSENAEYDAAKNRQGFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL++ + RA V+D+S +  D++ FGATV++ + ++ ++  Y+IVG+ EAD++ G +
Sbjct: 61  GRILELQDKLARAYVVDLSNLKPDKVVFGATVTVYDTSTEEEITYKIVGEDEADIKQGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S +SP+ +ALIG +L D + V+ P G K YEI+++ +
Sbjct: 121 SCTSPVGKALIGHKLDDSVRVSVPSGMKEYEIIEIRY 157


>gi|320540168|ref|ZP_08039823.1| putative transcription elongation factor [Serratia symbiotica str.
           Tucson]
 gi|320029834|gb|EFW11858.1| putative transcription elongation factor [Serratia symbiotica str.
           Tucson]
          Length = 158

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T  G +K+++EL + +   RP+II  I++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTLFGAEKLREELEYLKSVRRPKIIADIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ +    R+ FGATVS++  +S ++  Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITKIPNTGRVIFGATVSVLNLDSEEEVTYRIVGDDEADFKKNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SP+AR LIGKE  D++ +  PGG+  YEIL+V ++
Sbjct: 121 SVNSPMARGLIGKEQDDVVVIKTPGGDVDYEILKVEYL 158


>gi|218671794|ref|ZP_03521463.1| transcription elongation factor GreA [Rhizobium etli GR56]
          Length = 158

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 110/157 (70%), Positives = 136/157 (86%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T  GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVEKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR++ELE++  RAEVID++ MSG +I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 61  GRISELEDLTARAEVIDLTKMSGHKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157


>gi|319898512|ref|YP_004158605.1| transcription elongation factor GreA [Bartonella clarridgeiae 73]
 gi|319402476|emb|CBI76019.1| transcription elongation factor GreA [Bartonella clarridgeiae 73]
          Length = 157

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 102/157 (64%), Positives = 138/157 (87%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1   MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+ I RAEVI++S +SGDRI FGAT++L+++ + ++K YQIVGDQEADV++G +S
Sbjct: 61  RINELEDYIARAEVINVSRLSGDRIKFGATINLLDEETEERKVYQIVGDQEADVKTGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK+ GD+I VNAPGG + YEI+++ +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGARNYEIIKIQYI 157


>gi|197118284|ref|YP_002138711.1| transcription elongation factor GreA [Geobacter bemidjiensis Bem]
 gi|197087644|gb|ACH38915.1| transcription elongation factor GreA [Geobacter bemidjiensis Bem]
          Length = 158

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 111/157 (70%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   +P+T + ++ +Q++L+   +EERP++I+ I+EARA+GDLSENAEY AAK  Q   E
Sbjct: 1   MSQTVPLTKESYEALQEDLKRLIKEERPKVIQDIAEARAHGDLSENAEYDAAKNRQGFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL + + RA V+D+S +  D++ FGATV++ +  + ++  Y+IVG+ EAD++   +
Sbjct: 61  GRILELGDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEELTYKIVGEDEADIKQCKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S +SP+ +ALIG +L D + V+ P G K YEI+++ +
Sbjct: 121 SCTSPVGKALIGHKLDDSVRVSVPAGVKEYEIIEIRY 157


>gi|238787585|ref|ZP_04631383.1| Transcription elongation factor greA [Yersinia frederiksenii ATCC
           33641]
 gi|238724372|gb|EEQ16014.1| Transcription elongation factor greA [Yersinia frederiksenii ATCC
           33641]
          Length = 158

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G DK+++EL + +   RP+II  I++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGADKLREELDYLKGVRRPKIISDIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ M  + R+ FGATV ++  +S +++ Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVDSEEEQQYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D++ +  PGGE  YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILHVDYV 158


>gi|39996379|ref|NP_952330.1| transcription elongation factor GreA [Geobacter sulfurreducens PCA]
 gi|39983259|gb|AAR34653.1| transcription elongation factor GreA [Geobacter sulfurreducens PCA]
 gi|298505389|gb|ADI84112.1| transcription elongation factor GreA [Geobacter sulfurreducens
           KN400]
          Length = 158

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 111/158 (70%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   IP+T + ++ +Q+EL+   +EERPR+I+ I+EAR +GDLSENAEY AAK  Q   E
Sbjct: 1   MSHTIPMTKESYEALQEELKRLIREERPRVIQDIAEARGHGDLSENAEYDAAKNRQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL+  + RA V+D++ M  D++ FGATV+L +  + ++  Y+IVG++EAD++ G +
Sbjct: 61  GRILELQGKLARAYVVDLTGMKPDKVVFGATVTLYDTATEEEVTYKIVGEEEADIKLGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S +SP+ +ALIG +L D + +  P G K YEI+ + ++
Sbjct: 121 SCTSPVGKALIGHKLDDSVKIKVPSGLKEYEIIDIKYV 158


>gi|329297293|ref|ZP_08254629.1| GreA [Plautia stali symbiont]
          Length = 158

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T KG +K+++EL   +  +RPRII +I+EAR  GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTLKGAEKLREELNELKTVKRPRIIASIAEARELGDLKENAEYHAAREEQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M    R+ FGATV+++  ++ ++  Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTAMPKTGRVIFGATVTVLNVDTDEEFTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SP+AR L+GKE  D+  V  P G+  YE+L+V +I
Sbjct: 121 SVNSPMARGLMGKEADDVAIVKTPSGDVEYEVLKVEYI 158


>gi|197287221|ref|YP_002153093.1| transcription elongation factor [Proteus mirabilis HI4320]
 gi|227357084|ref|ZP_03841454.1| transcription elongation factor [Proteus mirabilis ATCC 29906]
 gi|194684708|emb|CAR46682.1| transcription elongation factor [Proteus mirabilis HI4320]
 gi|227162776|gb|EEI47739.1| transcription elongation factor [Proteus mirabilis ATCC 29906]
          Length = 158

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 117/158 (74%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T  G +K+++EL + +   RP I  AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTVLGAEKLREELEYLKSVRRPEITAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ M+ + RI FGATV+L+  ++ +++ Y+IVGD EA+++  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITKMTNNGRIIFGATVTLLNVDTEEEQKYRIVGDDEANIKENLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKEL D++ +N PGG+  YE+L V +I
Sbjct: 121 SVNSPIARGLIGKELDDVVVINTPGGQVEYEVLNVEYI 158


>gi|270265050|ref|ZP_06193313.1| transcription elongation factor GreA [Serratia odorifera 4Rx13]
 gi|270040984|gb|EFA14085.1| transcription elongation factor GreA [Serratia odorifera 4Rx13]
          Length = 158

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T  G +K+++EL + +   RP+II  I+ AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTLFGAEKLREELEYLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ M  + R+ FG+TVS++  +S ++  Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITKMPNNGRVIFGSTVSVMNLDSEEEVTYRIVGDDEADFKKNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SP+AR LIGKE  D++ +  PGG+  YEIL+V ++
Sbjct: 121 SVNSPMARGLIGKEQDDVVVIKTPGGDVDYEILKVEYL 158


>gi|127513765|ref|YP_001094962.1| transcription elongation factor GreA [Shewanella loihica PV-4]
 gi|126639060|gb|ABO24703.1| transcription elongation factor GreA [Shewanella loihica PV-4]
          Length = 158

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T  G +++++EL + + E+RP+I +AI  AR  GDL ENAEY AA+E Q L E 
Sbjct: 1   MNKVPMTVVGANQLREELDFLKFEKRPKIAEAIGIARELGDLKENAEYHAAREEQGLCEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++ID++ M    R+ FG TV+++  +S ++  Y+IVG+ EAD+++ L+
Sbjct: 61  RVRDIEGKLSHAQIIDVTKMENTGRVIFGTTVTILNLDSDEEFTYRIVGEDEADIKANLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GK  GD +S+  PGG   YEI  V +I
Sbjct: 121 SVTSPIARGLVGKSEGDEVSIQTPGGMTDYEITAVEYI 158


>gi|224370120|ref|YP_002604284.1| GreA1 [Desulfobacterium autotrophicum HRM2]
 gi|223692837|gb|ACN16120.1| GreA1 [Desulfobacterium autotrophicum HRM2]
          Length = 175

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/153 (45%), Positives = 108/153 (70%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D+IP+T +G+  +++EL+  +  ERP+ IKAI  ARA+GDLSENAE+ AAK+ Q+  EGR
Sbjct: 22  DQIPITIEGYAALKEELQRLKTIERPQNIKAIEIARAHGDLSENAEFDAAKDRQSFIEGR 81

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + EL   I  A++ID +T+S D + F + V +   +SG++  Y IVG +E+D+  G +S+
Sbjct: 82  IGELGYKIASAKIIDPATVSKDCVRFASRVVIENLDSGEEVEYMIVGQEESDIHKGKISV 141

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SSP+  AL+GK+ GD I + APGG++ YEI+ +
Sbjct: 142 SSPLGMALLGKQPGDEIVIQAPGGKRNYEIVDI 174


>gi|240850162|ref|YP_002971555.1| transcription elongation factor GreA [Bartonella grahamii as4aup]
 gi|240267285|gb|ACS50873.1| transcription elongation factor GreA [Bartonella grahamii as4aup]
          Length = 157

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 103/157 (65%), Positives = 136/157 (86%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T+ GF+ +++ELRWRQQ+ERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1   MEKVPMTTAGFESLKEELRWRQQQERPRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+ I RAEVID++ +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV+ G +S
Sbjct: 61  RINELEDYIARAEVIDVTRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKVGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK+ GD+I VNAPGG   YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157


>gi|190892720|ref|YP_001979262.1| transcription elongation factor (transcript cleavage factor)
           protein [Rhizobium etli CIAT 652]
 gi|238692510|sp|B3PUK3|GREA_RHIE6 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|190697999|gb|ACE92084.1| transcription elongation factor (transcript cleavage factor)
           protein [Rhizobium etli CIAT 652]
 gi|327192705|gb|EGE59642.1| transcription elongation factor (transcript cleavage factor)
           protein [Rhizobium etli CNPAF512]
          Length = 158

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 112/157 (71%), Positives = 136/157 (86%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MVDK+P+T  GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVDKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAEVID++ MSGD+I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 61  GRITELEDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157


>gi|83859439|ref|ZP_00952960.1| transcription elongation factor GreA [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852886|gb|EAP90739.1| transcription elongation factor GreA [Oceanicaulis alexandrii
           HTCC2633]
          Length = 152

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 87/151 (57%), Positives = 118/151 (78%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T++G   + +EL+  +  ERP +I AISEAR +GDLSENAEY AAKE Q   EGR+ EL
Sbjct: 1   MTAEGHKALDEELKHLKSVERPAVIAAISEAREHGDLSENAEYHAAKERQGWIEGRVQEL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E+ I RA+VID+S MSG ++ FGATV++V++++  +  Y+IVGD EADV+SG +S+SSPI
Sbjct: 61  EDKIARAQVIDVSKMSGTQVKFGATVTVVDEDTDQESTYKIVGDDEADVKSGKISLSSPI 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARA+I KE GD++ VNAPGG K+YEIL+V W
Sbjct: 121 ARAMINKEEGDVVEVNAPGGVKSYEILKVEW 151


>gi|84515779|ref|ZP_01003140.1| transcription elongation factor GreA [Loktanella vestfoldensis
           SKA53]
 gi|84510221|gb|EAQ06677.1| transcription elongation factor GreA [Loktanella vestfoldensis
           SKA53]
          Length = 156

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 86/156 (55%), Positives = 119/156 (76%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  GFDKI  EL+  +  ERP II+AISEAR +GDLSENAEY +AKE Q+  EG
Sbjct: 1   MEKIPLTRAGFDKIDAELKHLKSVERPAIIRAISEAREHGDLSENAEYHSAKEKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +I+ A+VID S  SG    FGATV LV++++ ++K Y IVG+ EAD++SG ++
Sbjct: 61  RVKELEGVISLADVIDPSKFSGPV-KFGATVLLVDEDTDEEKTYLIVGEYEADIESGKLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SP+ARALIGK+ GD I V+ PGG ++YEIL++ +
Sbjct: 120 MKSPLARALIGKDEGDSIEVSTPGGVRSYEILKITY 155


>gi|304396338|ref|ZP_07378219.1| GreA/GreB family elongation factor [Pantoea sp. aB]
 gi|304355847|gb|EFM20213.1| GreA/GreB family elongation factor [Pantoea sp. aB]
          Length = 158

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T +G +++++EL   +  +RPRII +I++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTLRGAERLREELNELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M    R+ FGATV+++   + ++  Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SP+AR L+GKE  D+  V  PGG+  YEIL+V ++
Sbjct: 121 SVNSPMARGLVGKEADDVAIVKTPGGDVEYEILKVEYL 158


>gi|222149296|ref|YP_002550253.1| transcription elongation factor GreA [Agrobacterium vitis S4]
 gi|254799544|sp|B9JYZ7|GREA_AGRVS RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|221736280|gb|ACM37243.1| transcription elongation facto [Agrobacterium vitis S4]
          Length = 158

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 108/157 (68%), Positives = 134/157 (85%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MVDK+P+T  GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVDKVPMTQNGFSKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR++ELE++  RAEVID+S MSG +I FGATV L+++++ ++K YQIVGDQEADV++G +
Sbjct: 61  GRVSELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDTDEEKIYQIVGDQEADVKAGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSPIARA+IGKE GD I V APGG K YEI+ V W
Sbjct: 121 SISSPIARAMIGKEAGDSIEVVAPGGSKAYEIIAVNW 157


>gi|332306411|ref|YP_004434262.1| transcription elongation factor GreA [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173740|gb|AEE22994.1| transcription elongation factor GreA [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 158

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T+KG D +++EL+  +  +RP IIK+I+EAR +GDL ENAEY AA+E Q+  EG
Sbjct: 1   MTQYPMTAKGADMLREELQHLKSVKRPEIIKSIAEAREHGDLKENAEYHAAREQQSFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++ID++ M  + ++ FG TV+++   S D+  Y+IVGD EAD+++ L+
Sbjct: 61  RIQDIEGKLSNAQIIDVTKMPNNGKVIFGTTVTILNLESDDEITYKIVGDDEADIKNNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR LIGK+L D++++  P G   +EI++V ++
Sbjct: 121 SVSSPIARGLIGKQLDDVVTIQTPKGAIEFEIIEVEYV 158


>gi|297539177|ref|YP_003674946.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
 gi|297258524|gb|ADI30369.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
          Length = 160

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/156 (53%), Positives = 115/156 (73%), Gaps = 1/156 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +IPVT KG +++++EL   +  +RP +I+AI+EARA GDLSENAEY+AAKE Q+  EGR+
Sbjct: 5   QIPVTVKGAEQLKEELLRLRSVDRPWVIQAIAEARAQGDLSENAEYEAAKERQSFIEGRI 64

Query: 64  AELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           AE+E  ++ A +ID ST  +  R  FG+TV + + +SG    YQIVGD EAD+++G +S+
Sbjct: 65  AEVEAKLSNAMIIDPSTLHADGRCVFGSTVRIEDLDSGSIITYQIVGDDEADIKNGKISV 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SSPI+R LIGK  GD+  V APGG K YEIL+V +I
Sbjct: 125 SSPISRGLIGKSEGDVAEVMAPGGVKEYEILEVQYI 160


>gi|84500249|ref|ZP_00998515.1| transcription elongation factor GreA [Oceanicola batsensis
           HTCC2597]
 gi|84392183|gb|EAQ04451.1| transcription elongation factor GreA [Oceanicola batsensis
           HTCC2597]
          Length = 156

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 80/156 (51%), Positives = 119/156 (76%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  GF  ++ EL+  +  ERP IIKAI+EAR  GDLSENAEY +A+E Q+  EG
Sbjct: 1   MEKIPMTRAGFTALEAELKHLKSVERPAIIKAIAEARELGDLSENAEYHSAREKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +I+ A+VID  T+S   + FGA V++V++++ ++K +QIVG+ EAD++ GL++
Sbjct: 61  RIKELEGVISLADVIDPKTLS-GAVKFGAKVTVVDEDTDEEKTWQIVGEYEADIEKGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SPIARALIGKE GD + V  PGG+++YEIL++ +
Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGDRSYEILKIEY 155


>gi|123440804|ref|YP_001004795.1| transcription elongation factor GreA [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087765|emb|CAL10551.1| transcription elongation factor [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|318607370|emb|CBY28868.1| transcription elongation factor GreA [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 158

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T  G +K+++EL + +   RP+II  I+ AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVNGAEKLREELDYLKGVRRPKIIADIATAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ M  + R+ FGATV ++   S +++ Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNVVSEEEQQYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D++ +  PGGE  YEIL V ++
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIRTPGGEVEYEILTVDYV 158


>gi|114771295|ref|ZP_01448715.1| transcription elongation factor GreA [alpha proteobacterium
           HTCC2255]
 gi|114548220|gb|EAU51107.1| transcription elongation factor GreA [alpha proteobacterium
           HTCC2255]
          Length = 156

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/157 (52%), Positives = 118/157 (75%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DKIP+T  GF     EL+  +  +RP +IKAI+EAR +GDLSENAEY +A+ELQ+  EG
Sbjct: 1   MDKIPMTPAGFKSADNELKQLKSVDRPSVIKAIAEAREHGDLSENAEYHSARELQSHIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE II+ A++ID+S +SG+   FGATV LV++++  ++  QIVG+ EA++++  ++
Sbjct: 61  RIKELEAIISLAQIIDVSKLSGNV-KFGATVHLVDEDTDAERTLQIVGEHEANIENNQIN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ++SPIARALIGKE GD + V  PGG K+YEIL V +I
Sbjct: 120 MNSPIARALIGKEEGDSVEVRTPGGVKSYEILSVKFI 156


>gi|32265653|ref|NP_859685.1| transcription elongation factor GreA [Helicobacter hepaticus ATCC
           51449]
 gi|81666522|sp|Q7VJT9|GREA_HELHP RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|32261701|gb|AAP76751.1| transcription elongation factor GreA [Helicobacter hepaticus ATCC
           51449]
          Length = 163

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 106/156 (67%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +   P+T+ G++K+  EL+  ++ ERPRI+  I  AR++GDL ENAEY AA+E Q   E 
Sbjct: 1   MATEPMTNYGYEKLCAELKNLKEVERPRIVVEIDIARSHGDLKENAEYHAAREKQAFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ EL  ++  A+VID +++  ++++FG++V ++  ++  +  Y +VG  E++   GL+S
Sbjct: 61  RINELGLMLANAQVIDPASLPHNKVSFGSSVKILNLDTDKEFVYTLVGSMESNPSKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +SSPIA+AL+GK  GD +S+  P GE  +EIL+V +
Sbjct: 121 VSSPIAKALMGKSEGDEVSITLPNGENEFEILEVFY 156


>gi|120597887|ref|YP_962461.1| transcription elongation factor GreA [Shewanella sp. W3-18-1]
 gi|146293941|ref|YP_001184365.1| transcription elongation factor GreA [Shewanella putrefaciens
           CN-32]
 gi|120557980|gb|ABM23907.1| transcription elongation factor GreA [Shewanella sp. W3-18-1]
 gi|145565631|gb|ABP76566.1| transcription elongation factor GreA [Shewanella putrefaciens
           CN-32]
 gi|319427318|gb|ADV55392.1| GreA/GreB family elongation factor [Shewanella putrefaciens 200]
          Length = 158

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T  G +++++EL   + E RP+I +AI+ AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MTKVPMTVVGAEQLRKELDILKFERRPKITEAIASARELGDLKENAEYHAAREEQGICEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++ID++ M  + RI FGATV+++  ++  +  Y+IVGD EA+++  L+
Sbjct: 61  RIRDIEGKLSNAQIIDVTKMVNNGRIIFGATVTILNLDTDAEVTYRIVGDDEANIKENLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GK  GD +S+  PGG   YEI+ V +I
Sbjct: 121 SVNSPIARGLVGKNEGDEVSITTPGGVTDYEIISVQYI 158


>gi|224823861|ref|ZP_03696970.1| transcription elongation factor GreA [Lutiella nitroferrum 2002]
 gi|224604316|gb|EEG10490.1| transcription elongation factor GreA [Lutiella nitroferrum 2002]
          Length = 158

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G + +++EL+  +  ERP +I+AI+EAR++GDLSENAEY AAKE Q   EG
Sbjct: 1   MNKVPLTLRGAELLKEELQRLKSVERPAVIEAIAEARSHGDLSENAEYDAAKERQAFVEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE  ++ A++I+ S   +  RI FG TV L++  + D+  YQIVGD EAD++   V
Sbjct: 61  RIAELEGKLSNAQIINPSELDAEGRIVFGTTVELMDLETEDEVTYQIVGDDEADIKFAKV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIGKE GD+  V APGG + YEIL V +I
Sbjct: 121 SVNSPIARALIGKEAGDVAEVMAPGGIREYEILDVKYI 158


>gi|325293542|ref|YP_004279406.1| transcription elongation factor GreA [Agrobacterium sp. H13-3]
 gi|325061395|gb|ADY65086.1| transcription elongation factor GreA [Agrobacterium sp. H13-3]
          Length = 158

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 109/157 (69%), Positives = 135/157 (85%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T  GF K+Q+ELR+RQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVEKVPMTHGGFIKLQEELRFRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAEVID+S MSG +I FGATV L++++S +++ YQIVGDQEADV++G +
Sbjct: 61  GRITELEDLTARAEVIDLSKMSGSKIKFGATVKLIDEDSDEERIYQIVGDQEADVKAGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSPIARALIGKE+GD I VNAPGG K YEIL V W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGAKGYEILAVQW 157


>gi|304321206|ref|YP_003854849.1| transcription elongation factor GreA [Parvularcula bermudensis
           HTCC2503]
 gi|303300108|gb|ADM09707.1| transcription elongation factor GreA [Parvularcula bermudensis
           HTCC2503]
          Length = 157

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 83/156 (53%), Positives = 121/156 (77%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T  GF K++ +++  +  ERP +I+AISEAR +GDLSENAEY AAKE Q+  EG
Sbjct: 1   MEKFPMTKAGFAKLEADIKHLKTVERPAVIQAISEAREHGDLSENAEYHAAKERQSWIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++ +LE+  +RA+VID++++SG  + FGA+V+LV++ + ++K YQIVGD EAD+++G +S
Sbjct: 61  QVLDLEDKHSRAQVIDVASLSGPDVKFGASVTLVDEETEEEKVYQIVGDLEADIKAGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ISSPIARALIGKE GD + V APGG   YEI +V +
Sbjct: 121 ISSPIARALIGKEEGDQVEVAAPGGSHIYEIEKVEY 156


>gi|78222984|ref|YP_384731.1| transcription elongation factor GreA [Geobacter metallireducens
           GS-15]
 gi|78194239|gb|ABB32006.1| GreA/GreB family elongation factor [Geobacter metallireducens
           GS-15]
          Length = 159

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/159 (45%), Positives = 112/159 (70%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   +P+T + +D +Q+EL+   +EERPR+I+ I+EAR++GDLSENAEY AAK  Q   E
Sbjct: 1   MSYSVPMTKESYDSLQEELKRLIREERPRVIQDIAEARSHGDLSENAEYDAAKNRQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL+  + RA V+D+S +  D++ FGATV+L +  S ++  Y+IVG++EAD++ G +
Sbjct: 61  GRIQELQGKLARAHVVDLSGLKPDKVVFGATVTLYDTTSEEEVTYKIVGEEEADIKLGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLWI 158
           S +SP+ +ALIG +L D + +  P G  K YEI+ + +I
Sbjct: 121 SCTSPVGKALIGHKLDDSVKIKVPSGSVKEYEIIDIKYI 159


>gi|119944570|ref|YP_942250.1| transcription elongation factor GreA [Psychromonas ingrahamii 37]
 gi|189042245|sp|A1ST36|GREA_PSYIN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|119863174|gb|ABM02651.1| transcription elongation factor GreA [Psychromonas ingrahamii 37]
          Length = 159

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T+ G  K++ EL+  +   RPRI+KAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MVQYPMTANGAAKLRSELKQLKTVTRPRIVKAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A +IDI+ ++ + ++ FGATV++V   +  +  Y+IVGD EA+++  L+
Sbjct: 61  RIQDIEAKLSNARIIDITNITNNGKVIFGATVTIVNVETDAEVTYKIVGDDEANIKINLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSP+AR LIGK L D IS+  PGG   YEI+ V +I
Sbjct: 121 SVSSPLARGLIGKTLDDEISIVTPGGTIDYEIISVQYI 158


>gi|49080972|gb|AAT50079.1| PA4755 [synthetic construct]
          Length = 159

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G   +++E++  +   RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MSKFPMTVQGARALEEEVKHLKGVLRPQISQAIAEARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ +    ++ FG TV +    + +   YQIVGD EAD++ G +
Sbjct: 61  RIRDIEAKLSNAQVIDVTAIPHSGKVIFGTTVDIANVETDETVTYQIVGDDEADIKGGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIGK  GD + V  PGG+  YEI++V  I
Sbjct: 121 SVNSPIARALIGKTEGDAVLVRTPGGDVEYEIVEVRHI 158


>gi|268319887|ref|YP_003293543.1| Transcription elongation factor greA [Lactobacillus johnsonii
           FI9785]
 gi|262398262|emb|CAX67276.1| Transcription elongation factor greA [Lactobacillus johnsonii
           FI9785]
          Length = 160

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 103/157 (65%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K+  +T++G +K+Q+EL+  +  +RP +I+ I  AR++GDLSEN+EY AAK+ Q+  
Sbjct: 1   MAEKVYPMTAEGKEKLQKELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ ++E ++  A+V+D  ++  + ++ G TV+  E  + D + Y IVG  E+D  +G 
Sbjct: 61  EQRIVQIEQMLKYAQVVDADSVDPNEVSIGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK+ G+ ++VN PGG     I  V 
Sbjct: 121 ISNDSPIAQALLGKKKGEKVTVNTPGGTFDVTINDVK 157


>gi|309805184|ref|ZP_07699236.1| transcription elongation factor GreA [Lactobacillus iners LactinV
           09V1-c]
 gi|308165418|gb|EFO67649.1| transcription elongation factor GreA [Lactobacillus iners LactinV
           09V1-c]
          Length = 161

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K+  +T++G DK+Q EL+  +  +RP +I+ I  AR++GDLSEN+EY AAK+ Q+  
Sbjct: 1   MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E ++  A+VID  ++  + ++ G TV+  E  + D + Y IVG  E+D  SG 
Sbjct: 61  EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEVYTIVGSDESDPLSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK+ GD++S+N PGG     I +V 
Sbjct: 121 ISNDSPIAKALLGKKKGDVVSINTPGGLFEVTIDEVT 157


>gi|83951519|ref|ZP_00960251.1| transcription elongation factor GreA [Roseovarius nubinhibens ISM]
 gi|83836525|gb|EAP75822.1| transcription elongation factor GreA [Roseovarius nubinhibens ISM]
          Length = 164

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 81/157 (51%), Positives = 123/157 (78%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T +G + ++ EL+  + EERP II+AI+EAR +GDLSENAEY +A+E Q+  EG
Sbjct: 9   MEKIPMTRRGHEALEVELKHLKSEERPAIIRAIAEAREHGDLSENAEYHSAREKQSFIEG 68

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +++ AEV D + +SG  I FGATV+LV++++ ++K +QIVG+ EA ++ GL++
Sbjct: 69  RIKELEGVLSLAEVFDPAKLSGP-IKFGATVTLVDEDTDEEKTWQIVGEHEASIEKGLLN 127

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SPIARALIGK+ GD + V  PGGE++YE+L++ +I
Sbjct: 128 IKSPIARALIGKDEGDSVEVRTPGGERSYEVLKIEYI 164


>gi|260431555|ref|ZP_05785526.1| transcription elongation factor GreA [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415383|gb|EEX08642.1| transcription elongation factor GreA [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 156

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/156 (49%), Positives = 114/156 (73%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  GF  ++ EL+  +  ERP II+AI+ AR  GDL ENAEY +A+E Q   EG
Sbjct: 1   MEKIPMTPAGFAALEAELKQLKSVERPAIIEAIASARELGDLKENAEYHSAREKQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +++ AEVID + +S   I FGA V+LV++++ ++K +QIVG+ EA+++ GL++
Sbjct: 61  RIKELEGVLSLAEVIDPTKLS-GAIKFGAKVTLVDEDTDEEKTWQIVGEHEANIEKGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SPIARALIGKE GD + V  PGG ++YE+L + +
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGVRSYEVLSIHY 155


>gi|47716785|gb|AAT37570.1| GreA [Sinorhizobium meliloti]
          Length = 163

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 111/157 (70%), Positives = 134/157 (85%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MVDK+P+T  GF  +Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 6   MVDKVPMTQGGFVNLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 65

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR++ELE++I RAEVID+S MSG +I FGA V LV++++ ++K YQIVGDQEADV+ G +
Sbjct: 66  GRISELEDLIARAEVIDLSKMSGSKIKFGARVKLVDEDTEEEKTYQIVGDQEADVKQGRI 125

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSPIARALIGKE+GD I VNAPGG K YEIL V W
Sbjct: 126 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILAVQW 162


>gi|322831206|ref|YP_004211233.1| transcription elongation factor GreA [Rahnella sp. Y9602]
 gi|321166407|gb|ADW72106.1| transcription elongation factor GreA [Rahnella sp. Y9602]
          Length = 158

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +++++EL   +   RP+II  I+ AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKPIPMTLRGAERLREELDHLKSVRRPKIISDIATAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M    R+ FGATV+++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTKMPATGRVIFGATVTVMNLDTEEEQKYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++ +  PGG+  +E+L+V ++
Sbjct: 121 SVNSPIARGLIGKEQDDVVVIKTPGGDVEFEVLKVEYL 158


>gi|308189104|ref|YP_003933235.1| Transcription elongation factor greA [Pantoea vagans C9-1]
 gi|308059614|gb|ADO11786.1| Transcription elongation factor greA [Pantoea vagans C9-1]
          Length = 158

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T +G +++++EL   +  +RPRII +I++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTLRGAERLREELNELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M    R+ FGATV+++   + ++  Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVTVLNVETDEEATYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SP+AR L+GKE  D+  V  PGG+  YEIL+V ++
Sbjct: 121 SVNSPMARGLVGKEADDVAIVKTPGGDVEYEILKVEYL 158


>gi|284006659|emb|CBA71921.1| transcription elongation factor [Arsenophonus nasoniae]
          Length = 179

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 22  MKQIPMTVRGAEKLRKELEFLKNIRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 81

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M  + R+ FGATV++    + + + Y+IVGD EAD++  L+
Sbjct: 82  RIQEIEAKLSHAQVIDVTKMKNEGRVIFGATVTVFNVTTNEDQIYRIVGDDEADIKENLI 141

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK + D+  +  PGGE  YEIL+V +I
Sbjct: 142 SVNSPIARGLIGKTMDDVAVITTPGGEVEYEILKVEYI 179


>gi|24372774|ref|NP_716816.1| transcription elongation factor GreA [Shewanella oneidensis MR-1]
 gi|24346855|gb|AAN54261.1|AE015563_1 transcription elongation factor GreA [Shewanella oneidensis MR-1]
          Length = 158

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T  G +++++EL   + E RP+I +AI+ AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MTKVPMTVVGAEQLRKELDMLKFERRPKITEAIASARELGDLKENAEYHAAREEQGICEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++ID++ M  + RI FGATV+++  ++  +  Y+IVGD EA+++  L+
Sbjct: 61  RIRDIEGKLSNAQIIDVTKMVNNGRIIFGATVTILNLDTDAEVTYRIVGDDEANIKENLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GK  GD +S+  PGG   YEI+ V +I
Sbjct: 121 SVNSPIARGLVGKNEGDEVSITTPGGLTDYEIISVQYI 158


>gi|322514696|ref|ZP_08067723.1| transcription elongation factor GreA [Actinobacillus ureae ATCC
           25976]
 gi|322119345|gb|EFX91458.1| transcription elongation factor GreA [Actinobacillus ureae ATCC
           25976]
          Length = 158

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G + I++EL + +   RP+II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGAELIREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A++ID++ M  + ++ FGATV LV  ++ ++  Y+IVGD EA+++ GL+
Sbjct: 61  RIQEIEGKLGNAQIIDVTKMVNNGKVIFGATVGLVNADTDEEVTYRIVGDDEANIKEGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKE+ D +S+  PGG+  ++I+ V +I
Sbjct: 121 SVNSPIARGLVGKEVDDSVSIVTPGGKVEFDIISVEYI 158


>gi|332978289|gb|EGK15017.1| transcription elongation factor GreA [Psychrobacter sp. 1501(2011)]
          Length = 158

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 104/157 (66%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   ++ EL+  +  +RPRI  +I+EAR +GDL ENAEY AA+E Q   E 
Sbjct: 1   MQRYPMTPQGHAALEAELKQLKTVDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID +T+  + R+ FG TV +   ++ ++K YQIVGD EAD ++  +
Sbjct: 61  RIRDIEAKLSGAQVIDPTTLPREGRVVFGVTVVIENLDTEEQKRYQIVGDDEADFKNNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIAR LIGK  GD   +  P G   +EI++V++
Sbjct: 121 SVNSPIARGLIGKSEGDEARIETPSGVVEFEIIEVIY 157


>gi|237749802|ref|ZP_04580282.1| transcription elongation factor GreA [Helicobacter bilis ATCC
           43879]
 gi|229374552|gb|EEO24943.1| transcription elongation factor GreA [Helicobacter bilis ATCC
           43879]
          Length = 161

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 108/157 (68%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +  P++  GF+K+ QEL+  ++ +RP++ + I  AR++GDL ENAEY AAKE Q   E
Sbjct: 1   MTE--PMSKYGFNKLTQELKDLKEVQRPKVAQEIDIARSHGDLKENAEYHAAKEKQAFIE 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++ EL  +++ A+VID ST+  D+++FG+T++++  N+  +  Y IVG  E++   GL+
Sbjct: 59  FKINELSKMLSNAQVIDPSTLPHDKVSFGSTITILNLNTDKEVVYTIVGTTESNPSKGLI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S +SP+A+ LIGKE GD + +N P GE  +EIL++ +
Sbjct: 119 SFNSPLAKELIGKEEGDEVIINLPAGETEFEILKIEY 155


>gi|114570689|ref|YP_757369.1| transcription elongation factor GreA [Maricaulis maris MCS10]
 gi|122315542|sp|Q0AMQ6|GREA_MARMM RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|114341151|gb|ABI66431.1| transcription elongation factor GreA [Maricaulis maris MCS10]
          Length = 157

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 87/156 (55%), Positives = 120/156 (76%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  G   + +EL+  +  ERP +I AISEAR +GDLSENAEY AAKE Q   EG
Sbjct: 1   MNKIPMTVAGQIALDEELKRLKTIERPAVIAAISEAREHGDLSENAEYHAAKERQGWIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+ + RA+VIDI+ MSGD + FGATV+++++++  +  YQIVG+ E+DV+SG +S
Sbjct: 61  RVQELEDKLARAQVIDITKMSGDTVKFGATVTVLDEDTEQESTYQIVGEDESDVKSGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ISSPIAR++I KE+GD+  VNAPGG K+YEI+ V W
Sbjct: 121 ISSPIARSMINKEVGDVAEVNAPGGLKSYEIMSVSW 156


>gi|86358571|ref|YP_470463.1| transcription elongation factor GreA [Rhizobium etli CFN 42]
 gi|123738296|sp|Q2K600|GREA_RHIEC RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|86282673|gb|ABC91736.1| transcription elongation factor (transcript cleavage factor)
           protein [Rhizobium etli CFN 42]
          Length = 158

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 111/157 (70%), Positives = 136/157 (86%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T  GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVEKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAEVID++ MSGD+I FGA V LV++++ ++K YQIVGDQEADV++G +
Sbjct: 61  GRITELEDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDTEEEKTYQIVGDQEADVKAGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 121 SISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 157


>gi|317177306|dbj|BAJ55095.1| transcription elongation factor GreA [Helicobacter pylori F16]
          Length = 164

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 104/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L  II  A+VID S ++ ++++FG+T+ ++   +  + +Y IVG  E+D   GL+S
Sbjct: 61  RIVDLSEIIANAQVIDPSALAHNKVSFGSTIKILNLGNDKEFSYTIVGSVESDPAKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SSPIA++LIGK  GD +S+  P GE  +EIL + +
Sbjct: 121 FSSPIAKSLIGKSKGDSVSIQLPNGESDFEILDIYY 156


>gi|86158153|ref|YP_464938.1| transcription elongation factor GreA [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85774664|gb|ABC81501.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 166

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 84/157 (53%), Positives = 119/157 (75%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + ++P+T  G  +++ ELR  +  ERP+I+K I+EARA+GDLSENAEY AAKE Q+  EG
Sbjct: 1   MQRVPMTKGGLVRLKDELRRLKSVERPKIVKEIAEARAHGDLSENAEYHAAKEKQSHIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+A++E+ I  AEVID++  +GDR+ FGATVSL +  SGD+  Y+IVG+ EAD++ G +S
Sbjct: 61  RIAQVEHWIASAEVIDVTKHAGDRVVFGATVSLEDTESGDQVTYRIVGELEADLKQGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ++SPIARALIG+  GD + V +PGGEK YEI  V ++
Sbjct: 121 VTSPIARALIGRSEGDTVVVRSPGGEKEYEIQSVAFV 157


>gi|300721528|ref|YP_003710803.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Xenorhabdus nematophila ATCC 19061]
 gi|297628020|emb|CBJ88569.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Xenorhabdus nematophila ATCC 19061]
          Length = 158

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G DK+++EL   +   RP+II AI++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGADKLREELEHLRNVRRPQIITAIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M+ + R+ FGATV+++  +S +++ Y+IVGD EA+++  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTKMTNNGRVIFGATVTVLNVDSDEEQTYRIVGDDEANIKENLL 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+ D + +  PGG+  YE+L V ++
Sbjct: 121 SVNSPIARGLIGKEVDDAVVIATPGGQVEYEVLNVDYL 158


>gi|209545146|ref|YP_002277375.1| transcription elongation factor GreA [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532823|gb|ACI52760.1| transcription elongation factor GreA [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 152

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 84/151 (55%), Positives = 122/151 (80%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T KG  ++++ELR  + EERP +I+AI+EAR++GDLSENAEY AA++ Q+  EGR+ EL
Sbjct: 1   MTGKGLQRLEEELRKLKSEERPAVIRAIAEARSHGDLSENAEYHAARDRQSFIEGRILEL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E+II+ AEVID +++SGD++ FGA VSLV++ +  +  YQIVG  EAD++ GL+S+SSP+
Sbjct: 61  EDIISSAEVIDPASLSGDQVKFGAQVSLVDEETDKEATYQIVGVHEADIKQGLLSVSSPL 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           A++LIGK +GD +SV APGG++TYEIL V +
Sbjct: 121 AKSLIGKRIGDSVSVPAPGGDRTYEILAVTY 151


>gi|121608129|ref|YP_995936.1| transcription elongation factor GreA [Verminephrobacter eiseniae
           EF01-2]
 gi|189042254|sp|A1WH11|GREA_VEREI RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|121552769|gb|ABM56918.1| transcription elongation factor GreA [Verminephrobacter eiseniae
           EF01-2]
          Length = 158

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 81/157 (51%), Positives = 110/157 (70%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K++QEL   +  ERP +I AI+EARA GDLSENA+Y AAK+ Q   EG
Sbjct: 1   MTTIPITKRGAEKLKQELHHLKTVERPSVITAIAEARAQGDLSENADYDAAKDRQGFVEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID      G ++ FGATV L ++ SGD   YQIVG+ EAD++ GL+
Sbjct: 61  RIQEIEGKLSVAQVIDPGEVDGGGKVVFGATVQLEDEESGDTVTYQIVGEDEADLKQGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +ISSPIARALIGKE GD   V AP G + YE++ V +
Sbjct: 121 NISSPIARALIGKEEGDTAEVQAPSGIRRYEVVAVSY 157


>gi|154246690|ref|YP_001417648.1| transcription elongation factor GreA [Xanthobacter autotrophicus
           Py2]
 gi|154160775|gb|ABS67991.1| transcription elongation factor GreA [Xanthobacter autotrophicus
           Py2]
          Length = 168

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 93/156 (59%), Positives = 128/156 (82%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T+ G+  + QEL+ RQQ ERPRII AISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 12  MEKIPMTAAGYAALAQELKQRQQVERPRIISAISEARAHGDLSENAEYHAAKEQQSLNEG 71

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+A+LE+ ++RAEVID+S +SGD + FGATV+LV++++ ++K +QIVGD EAD ++G +S
Sbjct: 72  RVADLEDKLSRAEVIDVSKLSGDIVKFGATVTLVDEDTEEEKVWQIVGDSEADAKAGRIS 131

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ISSP+ARALIGK+ G  + V  P G +++EI+ V W
Sbjct: 132 ISSPVARALIGKKKGASVEVVTPKGARSFEIVAVRW 167


>gi|85058346|ref|YP_454048.1| transcription elongation factor [Sodalis glossinidius str.
           'morsitans']
 gi|84778866|dbj|BAE73643.1| transcription elongation factor [Sodalis glossinidius str.
           'morsitans']
          Length = 158

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T  G +K+++EL + +   RP II +I+EAR  GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTLCGAEKLREELEYLKSIRRPEIILSIAEAREQGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++      R+ FGATVS+   +S +K+ ++IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTKLAPSGRVIFGATVSVENLDSEEKQTFRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI+SPIAR L+GKE GDI+ +  PGGE  YEIL+V ++
Sbjct: 121 SINSPIARGLVGKEEGDIVVIKTPGGEVEYEILKVEYL 158


>gi|197122524|ref|YP_002134475.1| transcription elongation factor GreA [Anaeromyxobacter sp. K]
 gi|220917309|ref|YP_002492613.1| transcription elongation factor GreA [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|238689850|sp|B4UCU9|GREA_ANASK RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|196172373|gb|ACG73346.1| transcription elongation factor GreA [Anaeromyxobacter sp. K]
 gi|219955163|gb|ACL65547.1| transcription elongation factor GreA [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 166

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 84/157 (53%), Positives = 119/157 (75%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + ++P+T  G  +++ ELR  +  ERP+I+K I+EARA+GDLSENAEY AAKE Q+  EG
Sbjct: 1   MQRVPMTKGGLVRLKDELRRLKSVERPKIVKEIAEARAHGDLSENAEYHAAKEKQSHIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+A++E+ I  AEVID++  +GDR+ FGATVSL +  SGD+  Y+IVG+ EAD++ G +S
Sbjct: 61  RIAQVEHWIASAEVIDVTKHAGDRVVFGATVSLEDAESGDQVTYRIVGELEADLKQGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ++SPIARALIG+  GD + V +PGGEK YEI  V ++
Sbjct: 121 VTSPIARALIGRSEGDTVVVRSPGGEKEYEIQSVAFV 157


>gi|148652641|ref|YP_001279734.1| transcription elongation factor GreA [Psychrobacter sp. PRwf-1]
 gi|189042246|sp|A5WDP3|GREA_PSYWF RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|148571725|gb|ABQ93784.1| transcription elongation factor GreA [Psychrobacter sp. PRwf-1]
          Length = 158

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 104/157 (66%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   ++ EL+  +  +RPRI  AI+EAR +GDL ENAEY AA+E Q   E 
Sbjct: 1   MQRYPMTPQGHAALEAELKQLKSVDRPRITAAIAEAREHGDLKENAEYHAAREQQGFCEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID +T+  + R+ FG TV +   ++ ++K YQIVGD EAD ++  +
Sbjct: 61  RIRDIEAKLSGAQVIDPATLPREGRVVFGVTVVIENLDTEEQKRYQIVGDDEADFKNNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIAR LIGK  GD   +  P G   +EI++V++
Sbjct: 121 SVNSPIARGLIGKSEGDEARIETPSGLVEFEIIEVIY 157


>gi|50119643|ref|YP_048810.1| transcription elongation factor GreA [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610169|emb|CAG73609.1| transcription elongation factor [Pectobacterium atrosepticum
           SCRI1043]
          Length = 159

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/159 (44%), Positives = 113/159 (71%), Gaps = 2/159 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G +K+++EL   +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQYPMTLRGAEKLREELDHLKSVRRPEIITAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTM--SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           R+ ++E  ++ A++ID++ M  +  R+ FGATV+++  +S +++ Y+IVGD EAD +  L
Sbjct: 61  RIQDIEAKLSNAQIIDVTKMAANNGRVIFGATVAVMNLDSEEEQTYRIVGDDEADFKQNL 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S++SPIAR LIGKE  D++ +  PGG+  YE+L+V ++
Sbjct: 121 ISVNSPIARGLIGKEQDDVVVIRTPGGDVEYEVLKVEYL 159


>gi|49474490|ref|YP_032532.1| transcription elongation factor GreA [Bartonella quintana str.
           Toulouse]
 gi|81646921|sp|Q6FZ57|GREA_BARQU RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|49239994|emb|CAF26408.1| Transcription elongation factor greA [Bartonella quintana str.
           Toulouse]
          Length = 157

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 104/157 (66%), Positives = 137/157 (87%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T+ GF+ +++ELRWRQQEERPRII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1   MEKVPMTTAGFESLKKELRWRQQEERPRIIEAISEARAHGDLSENAEYHAAKEAQSYNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+ I RAEVI++S +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV++G +S
Sbjct: 61  RINELEDYIARAEVINVSRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKTGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK+ GD+I VNAPGG   YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157


>gi|332283361|ref|YP_004415272.1| hypothetical protein PT7_0108 [Pusillimonas sp. T7-7]
 gi|330427314|gb|AEC18648.1| hypothetical protein PT7_0108 [Pusillimonas sp. T7-7]
          Length = 158

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 79/158 (50%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T++G +++Q EL   +  ERP +I AI+EARA GDLSENAEY AA+E Q   EG
Sbjct: 1   MSAIPLTARGAERLQAELHRLKTIERPEVINAIAEARAQGDLSENAEYDAARERQAFVEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ELE  ++ A++ID ST+  + +  FGATV + +  SG++  YQIVGD EAD++S L+
Sbjct: 61  RIQELEGTLSNAQIIDPSTLDVEGKAVFGATVEIEDLESGERVKYQIVGDVEADIRSNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSP+ARALIG+  GD++ V AP G + YE+L V ++
Sbjct: 121 SVSSPVARALIGRGQGDVVEVKAPAGIREYEVLNVSYL 158


>gi|302191231|ref|ZP_07267485.1| transcription elongation factor GreA [Lactobacillus iners AB-1]
 gi|309806139|ref|ZP_07700158.1| transcription elongation factor GreA [Lactobacillus iners LactinV
           03V1-b]
 gi|309808375|ref|ZP_07702277.1| transcription elongation factor GreA [Lactobacillus iners LactinV
           01V1-a]
 gi|309810229|ref|ZP_07704074.1| transcription elongation factor GreA [Lactobacillus iners SPIN
           2503V10-D]
 gi|312871828|ref|ZP_07731916.1| transcription elongation factor GreA [Lactobacillus iners LEAF
           3008A-a]
 gi|312873001|ref|ZP_07733061.1| transcription elongation factor GreA [Lactobacillus iners LEAF
           2062A-h1]
 gi|312875557|ref|ZP_07735558.1| transcription elongation factor GreA [Lactobacillus iners LEAF
           2053A-b]
 gi|325912092|ref|ZP_08174490.1| transcription elongation factor GreA [Lactobacillus iners UPII
           143-D]
 gi|325912612|ref|ZP_08174995.1| transcription elongation factor GreA [Lactobacillus iners UPII
           60-B]
 gi|329920134|ref|ZP_08276965.1| transcription elongation factor GreA [Lactobacillus iners SPIN
           1401G]
 gi|308167494|gb|EFO69654.1| transcription elongation factor GreA [Lactobacillus iners LactinV
           03V1-b]
 gi|308168382|gb|EFO70498.1| transcription elongation factor GreA [Lactobacillus iners LactinV
           01V1-a]
 gi|308169501|gb|EFO71549.1| transcription elongation factor GreA [Lactobacillus iners SPIN
           2503V10-D]
 gi|311088811|gb|EFQ47254.1| transcription elongation factor GreA [Lactobacillus iners LEAF
           2053A-b]
 gi|311091523|gb|EFQ49907.1| transcription elongation factor GreA [Lactobacillus iners LEAF
           2062A-h1]
 gi|311092770|gb|EFQ51126.1| transcription elongation factor GreA [Lactobacillus iners LEAF
           3008A-a]
 gi|325476042|gb|EGC79210.1| transcription elongation factor GreA [Lactobacillus iners UPII
           143-D]
 gi|325478033|gb|EGC81162.1| transcription elongation factor GreA [Lactobacillus iners UPII
           60-B]
 gi|328936588|gb|EGG33032.1| transcription elongation factor GreA [Lactobacillus iners SPIN
           1401G]
          Length = 161

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K+  +T++G DK+Q EL+  +  +RP +I+ I  AR++GDLSEN+EY AAK+ Q+  
Sbjct: 1   MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E ++  A+VID  ++  + ++ G TV+  E  + D + Y IVG  E+D  SG 
Sbjct: 61  EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEMYTIVGSDESDPLSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK+ GD++S+N PGG     I +V 
Sbjct: 121 ISNDSPIAKALLGKKKGDVVSINTPGGLFEVTIDEVT 157


>gi|15599949|ref|NP_253443.1| transcription elongation factor GreA [Pseudomonas aeruginosa PAO1]
 gi|107103852|ref|ZP_01367770.1| hypothetical protein PaerPA_01004923 [Pseudomonas aeruginosa PACS2]
 gi|116052902|ref|YP_793219.1| transcription elongation factor GreA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|152984538|ref|YP_001350797.1| transcription elongation factor GreA [Pseudomonas aeruginosa PA7]
 gi|218893850|ref|YP_002442719.1| transcription elongation factor GreA [Pseudomonas aeruginosa
           LESB58]
 gi|254238509|ref|ZP_04931832.1| transcription elongation factor GreA [Pseudomonas aeruginosa C3719]
 gi|254244343|ref|ZP_04937665.1| transcription elongation factor GreA [Pseudomonas aeruginosa 2192]
 gi|296391582|ref|ZP_06881057.1| transcription elongation factor GreA [Pseudomonas aeruginosa PAb1]
 gi|313109736|ref|ZP_07795676.1| transcription elongation factor GreA [Pseudomonas aeruginosa 39016]
 gi|25453009|sp|Q9HV46|GREA_PSEAE RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|9951018|gb|AAG08141.1|AE004889_4 transcription elongation factor GreA [Pseudomonas aeruginosa PAO1]
 gi|115588123|gb|ABJ14138.1| transcription elongation factor GreA [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126170440|gb|EAZ55951.1| transcription elongation factor GreA [Pseudomonas aeruginosa C3719]
 gi|126197721|gb|EAZ61784.1| transcription elongation factor GreA [Pseudomonas aeruginosa 2192]
 gi|150959696|gb|ABR81721.1| transcription elongation factor GreA [Pseudomonas aeruginosa PA7]
 gi|218774078|emb|CAW29894.1| transcription elongation factor GreA [Pseudomonas aeruginosa
           LESB58]
 gi|310882178|gb|EFQ40772.1| transcription elongation factor GreA [Pseudomonas aeruginosa 39016]
          Length = 158

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G   +++E++  +   RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MSKFPMTVQGARALEEEVKHLKGVLRPQISQAIAEARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ +    ++ FG TV +    + +   YQIVGD EAD++ G +
Sbjct: 61  RIRDIEAKLSNAQVIDVTAIPHSGKVIFGTTVDIANVETDETVTYQIVGDDEADIKGGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIGK  GD + V  PGG+  YEI++V  I
Sbjct: 121 SVNSPIARALIGKTEGDAVLVRTPGGDVEYEIVEVRHI 158


>gi|73541862|ref|YP_296382.1| transcription elongation factor GreA [Ralstonia eutropha JMP134]
 gi|72119275|gb|AAZ61538.1| transcription elongation factor GreA [Ralstonia eutropha JMP134]
          Length = 158

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G + +++EL   +  ERP +I AI+EARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPITKRGAELLKEELHRLKAVERPAVINAIAEARAQGDLSENAEYDAAKEKQAFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++ A+VID +   +  RI FGATV L +  SG   +YQIVGD EAD+ SG +
Sbjct: 61  RILEVESKLSAAQVIDPTQLDTDGRIVFGATVDLEDLESGSPVSYQIVGDDEADLDSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V APGGE+ YE++ V ++
Sbjct: 121 SVSSPIARALIGKFEGDVATVLAPGGEREYEVITVRYV 158


>gi|254503831|ref|ZP_05115982.1| transcription elongation factor GreA subfamily [Labrenzia
           alexandrii DFL-11]
 gi|222439902|gb|EEE46581.1| transcription elongation factor GreA subfamily [Labrenzia
           alexandrii DFL-11]
          Length = 157

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 96/157 (61%), Positives = 129/157 (82%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+TS G+  +Q EL+ R   ERPRI+ AISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MEKVPMTSAGYTMLQSELKERTGVERPRIVDAISEARAHGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AELE+ ++RAE+ID+S +SGD + FGATVSLV++++ ++K Y IVGD E+DV+   VS
Sbjct: 61  RIAELEDKLSRAEIIDVSKLSGDVVKFGATVSLVDEDTEEEKKYMIVGDVESDVKQSKVS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK +GD + V APGG ++YEI++V +I
Sbjct: 121 ISSPIARALIGKTVGDSVEVAAPGGARSYEIVEVQFI 157


>gi|325982668|ref|YP_004295070.1| transcription elongation factor GreA [Nitrosomonas sp. AL212]
 gi|325532187|gb|ADZ26908.1| transcription elongation factor GreA [Nitrosomonas sp. AL212]
          Length = 158

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 78/158 (49%), Positives = 108/158 (68%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T  G + +++EL   +   RP +I AI+EARA+GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPLTVAGAEALRKELHDMKTIHRPAVIAAIAEARAHGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A++I+ +   +     FGATV L +  + +   YQIVGD EA+++ G +
Sbjct: 61  RIAELESKLSSAQIINPALINADGACVFGATVELEDLQNSEVVTYQIVGDDEANIKDGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPI+RALIGK  GDI  V+AP G + YEIL V +I
Sbjct: 121 SISSPISRALIGKYAGDIAEVHAPSGIREYEILDVKYI 158


>gi|332530815|ref|ZP_08406741.1| transcription elongation factor GreA [Hylemonella gracilis ATCC
           19624]
 gi|332039727|gb|EGI76127.1| transcription elongation factor GreA [Hylemonella gracilis ATCC
           19624]
          Length = 158

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 81/157 (51%), Positives = 112/157 (71%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K++ EL   +  +RP +I AI+EARA GDLSENAEY AAK+ Q   EG
Sbjct: 1   MATIPITLRGAEKLKTELHRLKTVDRPAVINAIAEARAQGDLSENAEYDAAKDRQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID +   +G ++ FGATV L ++ +GD   YQIVG+ EAD++ GL+
Sbjct: 61  RIQEIEGKLSAAQVIDPAGLDAGGKVVFGATVELEDEATGDSVTYQIVGEDEADLKQGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ++SSPIARALIGKE GD   V APGG K YEI+ V +
Sbjct: 121 NVSSPIARALIGKEEGDTAEVQAPGGVKRYEIVAVSY 157


>gi|309803130|ref|ZP_07697227.1| transcription elongation factor GreA [Lactobacillus iners LactinV
           11V1-d]
 gi|312874272|ref|ZP_07734306.1| transcription elongation factor GreA [Lactobacillus iners LEAF
           2052A-d]
 gi|308164638|gb|EFO66888.1| transcription elongation factor GreA [Lactobacillus iners LactinV
           11V1-d]
 gi|311090342|gb|EFQ48752.1| transcription elongation factor GreA [Lactobacillus iners LEAF
           2052A-d]
          Length = 161

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K+  +T++G DK+Q EL+  +  +RP +I+ I  AR++GDLSEN+EY AAK+ Q+  
Sbjct: 1   MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E ++  A+VID  ++  + ++ G TV+  E  + D + Y IVG  E+D  SG 
Sbjct: 61  EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEIGTDDSEMYTIVGSDESDPLSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK+ GD++S+N PGG     I +V 
Sbjct: 121 ISNDSPIAKALLGKKKGDVVSINTPGGLFEVTIDEVT 157


>gi|42519498|ref|NP_965428.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC
           533]
 gi|116630017|ref|YP_815189.1| transcription elongation factor [Lactobacillus gasseri ATCC 33323]
 gi|227889550|ref|ZP_04007355.1| elongation factor GreA [Lactobacillus johnsonii ATCC 33200]
 gi|238853796|ref|ZP_04644162.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4]
 gi|282851368|ref|ZP_06260733.1| transcription elongation factor GreA [Lactobacillus gasseri 224-1]
 gi|300361220|ref|ZP_07057397.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03]
 gi|311110352|ref|ZP_07711749.1| transcription elongation factor GreA [Lactobacillus gasseri MV-22]
 gi|41583786|gb|AAS09394.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC
           533]
 gi|116095599|gb|ABJ60751.1| transcription elongation factor GreA [Lactobacillus gasseri ATCC
           33323]
 gi|227850028|gb|EEJ60114.1| elongation factor GreA [Lactobacillus johnsonii ATCC 33200]
 gi|238833605|gb|EEQ25876.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4]
 gi|282557336|gb|EFB62933.1| transcription elongation factor GreA [Lactobacillus gasseri 224-1]
 gi|300353839|gb|EFJ69710.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03]
 gi|311065506|gb|EFQ45846.1| transcription elongation factor GreA [Lactobacillus gasseri MV-22]
 gi|329667737|gb|AEB93685.1| transcription elongation factor GreA [Lactobacillus johnsonii DPC
           6026]
          Length = 160

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 103/157 (65%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K+  +T++G +K+Q+EL+  +  +RP +I+ I  AR++GDLSEN+EY AAK+ Q+  
Sbjct: 1   MAEKVYPMTAEGKEKLQKELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ ++E ++  A+V+D  ++  + ++ G TV+  E  + D + Y IVG  E+D  +G 
Sbjct: 61  EQRIVQIEQMLKYAQVVDADSVDPNEVSIGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK+ G+ +++N PGG     I  V 
Sbjct: 121 ISNDSPIAQALLGKKKGEKVTINTPGGTFDVTINDVK 157


>gi|225023997|ref|ZP_03713189.1| hypothetical protein EIKCOROL_00864 [Eikenella corrodens ATCC
           23834]
 gi|224943022|gb|EEG24231.1| hypothetical protein EIKCOROL_00864 [Eikenella corrodens ATCC
           23834]
          Length = 162

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 82/159 (51%), Positives = 117/159 (73%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++ KIP+T +G + ++QEL+  +  ERP II+AI+EAR +GDLSENAEY+AAKE Q   E
Sbjct: 4   IMQKIPLTVRGAELLKQELQHLKSVERPAIIEAIAEARTHGDLSENAEYEAAKEKQGFIE 63

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR++ELEN ++ A +ID + +  + +I FG TV L +  +  +  YQIVGD EAD++   
Sbjct: 64  GRISELENKLSAAHIIDPTEIHAEGKIVFGCTVVLEDLENETQVRYQIVGDDEADIKDNK 123

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SISSPI+RALIGKE GD+  V APGG + YE+++VL+I
Sbjct: 124 ISISSPISRALIGKEEGDVAEVQAPGGIREYEVIEVLYI 162


>gi|145589200|ref|YP_001155797.1| transcription elongation factor GreA [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047606|gb|ABP34233.1| transcription elongation factor GreA [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 158

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G + +++EL   +  ERP +I AISEARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPITKRGAELLKEELHRLKHIERPAVIIAISEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ELE+ ++ A+VID  S      + FGATV L +   G K  YQIVGD EAD+    +
Sbjct: 61  RIQELESKLSAAQVIDPASLDVTGLVVFGATVDLEDLEDGTKLTYQIVGDDEADIALNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALI KE GD+++V+AP G +  EIL V +I
Sbjct: 121 SISSPIARALISKEEGDVVAVHAPAGNREVEILAVRYI 158


>gi|187929112|ref|YP_001899599.1| transcription elongation factor GreA [Ralstonia pickettii 12J]
 gi|187726002|gb|ACD27167.1| transcription elongation factor GreA [Ralstonia pickettii 12J]
          Length = 158

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 80/158 (50%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G + ++ EL+  + +ERP ++ AI+EARA GDLSENA+Y AAKE Q   EG
Sbjct: 1   MSTIPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++ A++ID  S  +  R+ FGAT+ L + +SG    YQIVGD EAD++ G +
Sbjct: 61  RIQEIESKLSAAQIIDPASLDAEGRVVFGATIDLEDLDSGKPVTYQIVGDDEADIEIGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+ +V APGGE+ YE+L V ++
Sbjct: 121 SISSPIARALIGKLEGDVATVVAPGGEREYEVLAVKYL 158


>gi|94311130|ref|YP_584340.1| transcription elongation factor GreA [Cupriavidus metallidurans
           CH34]
 gi|93354982|gb|ABF09071.1| transcription elongation factor [Cupriavidus metallidurans CH34]
          Length = 173

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 85/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G + +++EL+  +  ERP +I AISEARA GDLSENAEY AAKE Q   EG
Sbjct: 16  MSTIPITKRGAELLKEELQRLKAVERPAVINAISEARAQGDLSENAEYDAAKEKQAFIEG 75

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID +   +  RI FGATV L E  SG+  +YQIVGD EAD+ +G +
Sbjct: 76  RILEVEAKLSAAQVIDPTQLDTDGRIVFGATVDLEELESGNPVSYQIVGDDEADLDTGKI 135

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+  V APGGE+ YE++ V +I
Sbjct: 136 SVSSPIARALIGKFEGDVAVVLAPGGEREYEVITVRYI 173


>gi|289207885|ref|YP_003459951.1| transcription elongation factor GreA [Thioalkalivibrio sp. K90mix]
 gi|288943516|gb|ADC71215.1| transcription elongation factor GreA [Thioalkalivibrio sp. K90mix]
          Length = 159

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T  G +K++ EL+  + E+RPR++ AI+EAR +GDL ENAEY AA+E Q+  EG
Sbjct: 1   MNKTPLTVTGAEKMKAELKKLKGEDRPRVVNAIAEAREHGDLKENAEYHAAREQQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ELE  ++ A++ID++ +    ++ FG TV L     G +  Y+IVG+ EAD++  ++
Sbjct: 61  RIRELEGKLSNAQIIDVTALPQTGKVVFGVTVVLEATEDGRQVTYKIVGEDEADIKQNMI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGKE GD+++V APGGE  YEIL+V ++
Sbjct: 121 SVSSPIARALIGKEEGDVVTVQAPGGETEYEILEVRYV 158


>gi|222056354|ref|YP_002538716.1| transcription elongation factor GreA [Geobacter sp. FRC-32]
 gi|221565643|gb|ACM21615.1| transcription elongation factor GreA [Geobacter sp. FRC-32]
          Length = 158

 Score =  150 bits (378), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 112/157 (71%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   +P+T + ++ +Q+EL+   +EERP++I+ I+EAR++GDLSENAEY AAK  Q   E
Sbjct: 1   MSQSVPLTKESYEFLQEELKRLIKEERPKVIQDIAEARSHGDLSENAEYDAAKHRQGFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL++ + RA V+D+S +  D++ FGATV++ +  + ++  Y+IVG+ EAD++ G +
Sbjct: 61  GRILELQDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEEVTYKIVGEDEADIKIGKM 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S +SP+ +ALIG +L D + V+ P G K YEI+ + +
Sbjct: 121 SCTSPVGKALIGHKLDDTVKVSVPSGMKEYEIIDIKY 157


>gi|160900362|ref|YP_001565944.1| transcription elongation factor GreA [Delftia acidovorans SPH-1]
 gi|160365946|gb|ABX37559.1| transcription elongation factor GreA [Delftia acidovorans SPH-1]
          Length = 158

 Score =  150 bits (378), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 85/158 (53%), Positives = 120/158 (75%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K++ EL   +  ERP II+AI+EARA GDLSENAEY+AAK+ Q   EG
Sbjct: 1   MATIPITKRGAEKLKDELHRLKTVERPSIIQAIAEARAQGDLSENAEYEAAKDRQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ ++ A++ID S+  +G R+ FGATV L +++SGD   YQIVG+ EAD++ GL+
Sbjct: 61  RIAEVESKLSAAQIIDPSSVDAGGRVVFGATVELEDEDSGDTVKYQIVGEDEADLKLGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ++SSPIARALIGKE GD   V APGGE+ YE++ V ++
Sbjct: 121 NVSSPIARALIGKEEGDTAVVQAPGGERRYEVVSVRYL 158


>gi|319944199|ref|ZP_08018475.1| transcription elongation factor GreA [Lautropia mirabilis ATCC
           51599]
 gi|319742494|gb|EFV94905.1| transcription elongation factor GreA [Lautropia mirabilis ATCC
           51599]
          Length = 159

 Score =  150 bits (378), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M    P+T  G   ++ EL+  +  ERP +I AI+EARA GDLSENAEY++AKE Q+  E
Sbjct: 1   MATSFPLTKHGAQLLKDELQRLKSVERPNVINAIAEARAQGDLSENAEYESAKERQSFIE 60

Query: 61  GRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+AELE  ++ A++ID +   +  R+ FGATV L + +SGDK  YQIVG+ EAD++   
Sbjct: 61  GRIAELEGKLSAAQIIDPAALDADGRVVFGATVQLEDIDSGDKVTYQIVGEDEADLKLSK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +S++SP+ARALIGK  GD+ S  APGGE+ YEIL VL+
Sbjct: 121 ISVASPLARALIGKYAGDVASFQAPGGEREYEILDVLY 158


>gi|113969357|ref|YP_733150.1| transcription elongation factor GreA [Shewanella sp. MR-4]
 gi|114046584|ref|YP_737134.1| transcription elongation factor GreA [Shewanella sp. MR-7]
 gi|117919466|ref|YP_868658.1| transcription elongation factor GreA [Shewanella sp. ANA-3]
 gi|113884041|gb|ABI38093.1| transcription elongation factor GreA [Shewanella sp. MR-4]
 gi|113888026|gb|ABI42077.1| transcription elongation factor GreA [Shewanella sp. MR-7]
 gi|117611798|gb|ABK47252.1| transcription elongation factor GreA [Shewanella sp. ANA-3]
          Length = 158

 Score =  150 bits (378), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 67/158 (42%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T  G +++++EL   + E RP+I +AI+ AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MTKVPMTVVGAEQLRKELDMLKFERRPKITEAIASARELGDLKENAEYHAAREEQGICEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++ID++ M+ + RI FG TV+++  ++  +  Y+IVGD EA+++  L+
Sbjct: 61  RIRDIEGKLSNAQIIDVTKMANNGRIIFGTTVTILNLDTDAEVTYRIVGDDEANIKENLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GK  GD +S+  PGG   YEI+ V +I
Sbjct: 121 SVNSPIARGLVGKNEGDEVSIATPGGLTDYEIISVQYI 158


>gi|294676071|ref|YP_003576686.1| transcription elongation factor GreA [Rhodobacter capsulatus SB
           1003]
 gi|294474891|gb|ADE84279.1| transcription elongation factor GreA [Rhodobacter capsulatus SB
           1003]
          Length = 156

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 83/157 (52%), Positives = 121/157 (77%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  G+D + +EL+  +  ERP +IKAI+EAR +GDLSENAEY AA+E Q+  EG
Sbjct: 1   MEKIPMTRAGYDVLDEELKTLKSVERPAVIKAIAEAREHGDLSENAEYHAAREKQSFVEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+I+ RAEVID +      I FGATV+LV++++ +++ YQIVG+ EAD++ GL++
Sbjct: 61  RIKELESILGRAEVID-TVKLSGSIKFGATVTLVDEDTEEERTYQIVGEHEADLERGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARALIGK+ GD + V  PGG+++YEIL V ++
Sbjct: 120 IKSPLARALIGKDEGDSVEVRTPGGQRSYEILSVRFL 156


>gi|113868419|ref|YP_726908.1| transcription elongation factor GreA [Ralstonia eutropha H16]
 gi|113527195|emb|CAJ93540.1| transcription elongation factor GreA [Ralstonia eutropha H16]
          Length = 158

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G + +++EL+  +  ERP +I AISEARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPITKRGAELLKEELQRLKAVERPAVINAISEARAQGDLSENAEYDAAKEKQAFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A++ID +   +  RI FGATV L +  SG   +YQIVGD EAD+  G +
Sbjct: 61  RILEVEAKLSAAQIIDPTQLDTDGRIVFGATVDLEDLESGSPVSYQIVGDDEADIDVGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V APGGE+ YE++ V +I
Sbjct: 121 SVSSPIARALIGKFEGDVATVLAPGGEREYEVITVRYI 158


>gi|262376633|ref|ZP_06069861.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145]
 gi|262308343|gb|EEY89478.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145]
          Length = 158

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 106/158 (67%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +++EL   +  +RPRI  +I+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQRYPMTPEGKIALEKELHQLKTVDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A+VID+  +  + R+ FG TV++   ++ ++K Y+IVGD EAD +   +
Sbjct: 61  RIQDIEGKLGAAQVIDVKELEHNGRVVFGVTVTIENLDTEEQKTYKIVGDDEADFKINKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GK  GD + +N P GE  YEI++V ++
Sbjct: 121 SVNSPIARGLLGKNEGDDVKINTPNGEVEYEIVKVEYL 158


>gi|121594730|ref|YP_986626.1| transcription elongation factor GreA [Acidovorax sp. JS42]
 gi|222110667|ref|YP_002552931.1| transcription elongation factor grea [Acidovorax ebreus TPSY]
 gi|120606810|gb|ABM42550.1| transcription elongation factor GreA [Acidovorax sp. JS42]
 gi|221730111|gb|ACM32931.1| transcription elongation factor GreA [Acidovorax ebreus TPSY]
          Length = 158

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL   +  ERP +I AI+EARA GDLSENAEY+AAK+ Q   EG
Sbjct: 1   MATIPITKRGAEKLKEELHRLKTVERPAVISAIAEARAQGDLSENAEYEAAKDRQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A++ID S   +G R+ FGATV L ++++GD   YQIVG+ EAD++ GL+
Sbjct: 61  RIMEIEGKLSAAQIIDPSALDAGGRVVFGATVELEDEDTGDAVKYQIVGEDEADLKHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ++SSPIARALIGKE GD   V APGG + YE++ V +I
Sbjct: 121 NVSSPIARALIGKEEGDTAEVQAPGGVRRYEVVAVSYI 158


>gi|317046732|ref|YP_004114380.1| GreA/GreB family elongation factor [Pantoea sp. At-9b]
 gi|316948349|gb|ADU67824.1| GreA/GreB family elongation factor [Pantoea sp. At-9b]
          Length = 158

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T KG +K+++EL   +  +RPRII +I+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTLKGAEKLREELNELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ M    R+ FGATV ++  ++ ++  Y+IVGD EAD +  L+
Sbjct: 61  RIQEIEAKLSNAQVIDVTQMPKTGRVIFGATVQVLNLDTDEESTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SP+AR L+GKE  D+  +  PGG+  YEIL+V ++
Sbjct: 121 SVNSPMARGLVGKEADDVAIIKTPGGDVEYEILKVEYL 158


>gi|217034498|ref|ZP_03439909.1| hypothetical protein HP9810_873g14 [Helicobacter pylori 98-10]
 gi|216943039|gb|EEC22518.1| hypothetical protein HP9810_873g14 [Helicobacter pylori 98-10]
 gi|315586469|gb|ADU40850.1| transcription elongation factor GreA [Helicobacter pylori 35A]
 gi|317178776|dbj|BAJ56564.1| transcription elongation factor GreA [Helicobacter pylori F30]
          Length = 164

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 104/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L  II  A+VID S ++ ++++FG+T+ ++  ++  + +Y IVG  E+D   GL+S
Sbjct: 61  RIVDLSEIIANAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIA++LIGK  GD +S+  P GE  +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDSVSIQLPNGESDFEILDIYY 156


>gi|300691215|ref|YP_003752210.1| transcription elongation factor [Ralstonia solanacearum PSI07]
 gi|299078275|emb|CBJ50923.1| transcription elongation factor [Ralstonia solanacearum PSI07]
          Length = 158

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G + +++EL+  + +ERP ++ AI+EARA GDLSENA+Y AAKE Q   EG
Sbjct: 1   MSTIPITKRGAEMLKEELQRLKTKERPAVVTAIAEARAQGDLSENADYDAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++ A+VID  S  +  RI FGAT+ L + +SG    YQIVGD EAD+++G +
Sbjct: 61  RIQEIESKLSAAQVIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLETGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+ +V APGGE+ YE+L V ++
Sbjct: 121 SISSPIARALIGKLEGDVATVIAPGGEREYEVLAVKYL 158


>gi|46202225|ref|ZP_00053548.2| COG0782: Transcription elongation factor [Magnetospirillum
           magnetotacticum MS-1]
          Length = 152

 Score =  150 bits (378), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 82/151 (54%), Positives = 118/151 (78%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G  ++++ELR  +  ER  +I+AI+EAR +GDLSENAEY AA+E Q+  EGR++EL
Sbjct: 1   MTPAGLAQLEEELRTLKYVERQAVIRAIAEAREHGDLSENAEYHAARERQSFIEGRVSEL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E+II+RA VIDI+++SGD++ FGATV+L ++++ D+  Y IVG  EAD++SG +S+ SP+
Sbjct: 61  EDIISRAHVIDIASLSGDQVRFGATVTLADEDTDDEVVYTIVGAHEADIKSGRMSVHSPL 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARALIGK LGD + V APGG K+YEI+ V +
Sbjct: 121 ARALIGKHLGDTVEVTAPGGSKSYEIVDVKF 151


>gi|91792357|ref|YP_562008.1| transcription elongation factor GreA [Shewanella denitrificans
           OS217]
 gi|91714359|gb|ABE54285.1| transcription elongation factor GreA [Shewanella denitrificans
           OS217]
          Length = 158

 Score =  149 bits (377), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T  G +++++EL   + + RP+I +AI+ AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MSKVPMTVVGAEQLRKELELLKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++ID++ +    R+ FG TV+++   +  +  Y+IVGD EAD++  L+
Sbjct: 61  RIRDIEGKLSNAQIIDVTKIENTGRVIFGTTVTILNVETDAEVKYRIVGDDEADIKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK  GD +S+  PGG   YEI+ V +I
Sbjct: 121 SVNSPIARGLIGKNEGDEVSITTPGGLTDYEIIAVEYI 158


>gi|188532495|ref|YP_001906292.1| Transcription elongation factor GreA [Erwinia tasmaniensis Et1/99]
 gi|188027537|emb|CAO95384.1| Transcription elongation factor GreA [Erwinia tasmaniensis Et1/99]
          Length = 160

 Score =  149 bits (377), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 113/160 (70%), Gaps = 3/160 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T +G DK+++EL   +  +RPRII +I++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTLRGADKLREELEELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTM---SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           R+ E+E  ++ A+VID++ M   +  R+ FGATV+++   + ++  Y+IVGD EAD +  
Sbjct: 61  RIQEIEAKLSNAQVIDVTQMAGNANGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQN 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           L+S++SP+AR L+GK   D+  +  PGG+  YEI++V ++
Sbjct: 121 LISVNSPMARGLVGKVADDVTVIKTPGGDVEYEIVKVEYL 160


>gi|188580289|ref|YP_001923734.1| transcription elongation factor GreA [Methylobacterium populi
           BJ001]
 gi|179343787|gb|ACB79199.1| transcription elongation factor GreA [Methylobacterium populi
           BJ001]
          Length = 160

 Score =  149 bits (377), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 95/155 (61%), Positives = 126/155 (81%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           DK+P+T++G+  +++EL+ RQQ ERPRII+AISEARA GDLSENAEY AAKE Q+ NEGR
Sbjct: 4   DKLPITARGYAALEEELKQRQQVERPRIIQAISEARALGDLSENAEYHAAKEAQSHNEGR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELE++I RAE+ID S +SG +I FGA V LV++++ ++K YQ+VG+ EADV+ G VSI
Sbjct: 64  VLELESMIARAEIIDTSKLSGSKIKFGARVKLVDEDTEEEKTYQLVGEPEADVREGRVSI 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SSPIARALIGK +GD + V  PGG K+YE++ V W
Sbjct: 124 SSPIARALIGKAVGDTVEVTTPGGGKSYEVVAVEW 158


>gi|146283640|ref|YP_001173793.1| transcription elongation factor GreA [Pseudomonas stutzeri A1501]
 gi|145571845|gb|ABP80951.1| transcription elongation factor GreA [Pseudomonas stutzeri A1501]
 gi|327482035|gb|AEA85345.1| transcription elongation factor GreA [Pseudomonas stutzeri DSM
           4166]
          Length = 158

 Score =  149 bits (377), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 104/158 (65%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G   +++EL+  +   RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MTKFPMTIQGARALEEELKHLKTVLRPQITQAIAEARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A+VID  S     ++ FG TV +    + ++  YQIVGD EAD++ G +
Sbjct: 61  RIRDIEGRLQNAQVIDIASIAPTGKVIFGTTVDIANVETDEQVTYQIVGDDEADIKQGKL 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGKE GD+++V  P G   YEI++V  I
Sbjct: 121 SVSSPIARALIGKEEGDVVAVKTPSGLIEYEIVEVRHI 158


>gi|255261573|ref|ZP_05340915.1| transcription elongation factor GreA [Thalassiobium sp. R2A62]
 gi|255103908|gb|EET46582.1| transcription elongation factor GreA [Thalassiobium sp. R2A62]
          Length = 156

 Score =  149 bits (377), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 82/156 (52%), Positives = 118/156 (75%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DKIP+T  G+D +  EL+  +  ERP II+AI+EAR +GDLSENAEY +AKE Q+  EG
Sbjct: 1   MDKIPLTKAGYDALNAELKHLKSVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +I+ A+VID S MS     FGA V LV++++ ++K+YQIVG+ EAD+++G ++
Sbjct: 61  RVKELEGVISLADVIDTSKMS-GTAKFGAMVKLVDEDTDEEKSYQIVGEHEADIENGKLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SP+ARALIGK+ GD + V  PGG K+YEIL++ +
Sbjct: 120 MKSPLARALIGKDEGDSVEVRTPGGGKSYEILEINY 155


>gi|82701614|ref|YP_411180.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC
           25196]
 gi|82409679|gb|ABB73788.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC
           25196]
          Length = 158

 Score =  149 bits (377), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 109/158 (68%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T  G  K++ EL   +  +RP +I AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 1   MSTIPLTVTGAGKLRAELHEMKTVQRPAVIAAIAEARSHGDLSENAEYEAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A++ID +T  +     FGAT+ L +  S     YQIVGD EAD++ G +
Sbjct: 61  RIAELESKLSNAQIIDPATLDADGACVFGATIDLEDVESATTVTYQIVGDDEADIKEGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPI+RALIGK  GD+  V APGG + YEIL V +I
Sbjct: 121 SISSPISRALIGKYPGDVAEVMAPGGVREYEILDVRYI 158


>gi|126728314|ref|ZP_01744130.1| transcription elongation factor GreA [Sagittula stellata E-37]
 gi|126711279|gb|EBA10329.1| transcription elongation factor GreA [Sagittula stellata E-37]
          Length = 156

 Score =  149 bits (377), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 83/156 (53%), Positives = 116/156 (74%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DKI +T  GF  ++ EL+  +  ERP II+AISEAR  GDL ENAEY +A+E Q   EG
Sbjct: 1   MDKILITRAGFTALEAELKQLKSVERPAIIQAISEARELGDLKENAEYHSAREKQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE++I  AEVID +++SG    FGATV++V++++ ++K +QIVG+ EA ++ GL++
Sbjct: 61  RIKELESVIGLAEVIDPASLSGSV-KFGATVTVVDEDTDEEKTWQIVGEHEASIEKGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SPIARALIGKE GD + V  PGGEK+YEIL V +
Sbjct: 120 VKSPIARALIGKEEGDSVEVRTPGGEKSYEILSVSY 155


>gi|149927094|ref|ZP_01915352.1| transcription elongation factor GreA [Limnobacter sp. MED105]
 gi|149824315|gb|EDM83535.1| transcription elongation factor GreA [Limnobacter sp. MED105]
          Length = 158

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 85/158 (53%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T KG +K++QEL   +  +RP +I AISEARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MATIPLTVKGAEKLKQELHRLKTIDRPAVINAISEARAQGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A++ID +   +  R+ FGATV L +  +G    YQIVGD EAD+++GL+
Sbjct: 61  RIKEIEGKMSNAQIIDPTNVDAEGRVVFGATVKLEDIEAGATVEYQIVGDDEADIKAGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+  V APGG + YE+L+V +I
Sbjct: 121 SISSPIARALIGKYEGDVAHVQAPGGLREYEVLEVKYI 158


>gi|167648248|ref|YP_001685911.1| transcription elongation factor GreA [Caulobacter sp. K31]
 gi|189042240|sp|B0SZ84|GREA_CAUSK RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|167350678|gb|ABZ73413.1| transcription elongation factor GreA [Caulobacter sp. K31]
          Length = 157

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 85/157 (54%), Positives = 124/157 (78%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T+ G+  + +EL+  +  ERP +I AISEAR +GDLSENAEY AAKE Q   EG
Sbjct: 1   MEKVPMTAGGYQTLDEELKRLKTIERPAVIAAISEARQHGDLSENAEYHAAKERQGWIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AE+E+ I RA+VID+S +SG ++ FGATVS+V++++ ++  YQIVGD EADV+ G +S
Sbjct: 61  RIAEIEDKIARAQVIDVSKLSGKQVKFGATVSVVDEDTEEESRYQIVGDHEADVKEGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SSP++RA+IGKE+G+++ V  PGG K YEIL+V W+
Sbjct: 121 LSSPLSRAMIGKEVGEVVEVYTPGGVKAYEILKVEWV 157


>gi|307944270|ref|ZP_07659611.1| transcription elongation factor GreA [Roseibium sp. TrichSKD4]
 gi|307772616|gb|EFO31836.1| transcription elongation factor GreA [Roseibium sp. TrichSKD4]
          Length = 157

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 95/157 (60%), Positives = 126/157 (80%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T+ G+  +Q+EL+ R   ERPRI++AI+EARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1   MEKVPMTTDGYAMLQEELKQRTSVERPRIVEAIAEARAHGDLSENAEYHAAKEAQSHNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AELE+ ++RAEVID+S MSGD I FGATVSLV++++ ++K Y IVGD EADV+   +S
Sbjct: 61  RVAELEDKLSRAEVIDVSKMSGDVIKFGATVSLVDEDTEEEKKYMIVGDVEADVKQHKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK  GD + V APGG + YEI  V ++
Sbjct: 121 ISSPIARALIGKTEGDSVEVAAPGGARAYEITAVEYV 157


>gi|254465444|ref|ZP_05078855.1| transcription elongation factor GreA [Rhodobacterales bacterium
           Y4I]
 gi|206686352|gb|EDZ46834.1| transcription elongation factor GreA [Rhodobacterales bacterium
           Y4I]
          Length = 156

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 76/156 (48%), Positives = 120/156 (76%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  G   ++ EL+  +  ERP II+AI+EAR  GDLSENAEY +A+E Q+  EG
Sbjct: 1   MEKIPMTPAGHAALESELKTLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I++ A+VI+ + ++   I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61  RIKELEGILSLADVINPAKLN-GAIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SPIARALIGK+ GD + V  PGGE++YEIL++++
Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGERSYEILKIVY 155


>gi|49475893|ref|YP_033934.1| transcription elongation factor GreA [Bartonella henselae str.
           Houston-1]
 gi|81647735|sp|Q6G2M7|GREA_BARHE RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|49238701|emb|CAF27953.1| Transcription elongation factor greA [Bartonella henselae str.
           Houston-1]
          Length = 157

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 103/157 (65%), Positives = 136/157 (86%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T+ GF+ +++ELRWRQQEERPRII+AISEARA+GDLS NAEY AAKE Q+ NEG
Sbjct: 1   MEKVPMTTAGFESLKEELRWRQQEERPRIIEAISEARAHGDLSGNAEYHAAKEAQSHNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+ I RAEVI++S +SGD+I FGAT+ L+++++ +KK YQIVGDQEADV++G +S
Sbjct: 61  RINELEDYIARAEVINVSRLSGDKIKFGATIKLLDEDTEEKKVYQIVGDQEADVKTGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK+ GD+I VNAPGG   YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIEVQYI 157


>gi|126175452|ref|YP_001051601.1| transcription elongation factor GreA [Shewanella baltica OS155]
 gi|153001803|ref|YP_001367484.1| transcription elongation factor GreA [Shewanella baltica OS185]
 gi|160876536|ref|YP_001555852.1| transcription elongation factor GreA [Shewanella baltica OS195]
 gi|217972302|ref|YP_002357053.1| transcription elongation factor GreA [Shewanella baltica OS223]
 gi|304410278|ref|ZP_07391897.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
 gi|307302011|ref|ZP_07581769.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
 gi|125998657|gb|ABN62732.1| transcription elongation factor GreA [Shewanella baltica OS155]
 gi|151366421|gb|ABS09421.1| transcription elongation factor GreA [Shewanella baltica OS185]
 gi|160862058|gb|ABX50592.1| transcription elongation factor GreA [Shewanella baltica OS195]
 gi|217497437|gb|ACK45630.1| transcription elongation factor GreA [Shewanella baltica OS223]
 gi|304351687|gb|EFM16086.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
 gi|306914049|gb|EFN44470.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
 gi|315268730|gb|ADT95583.1| transcription elongation factor GreA [Shewanella baltica OS678]
          Length = 158

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T  G +++++EL   + + RP+I +AI+ AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MTKVPMTVVGAEQLRKELDILKFDRRPKITEAIASARELGDLKENAEYHAAREDQGICEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++ID++ M  + RI FGATV+++  ++  +  Y+IVGD EA+++  L+
Sbjct: 61  RIRDIEGKLSNAQIIDVTKMVNNGRIIFGATVTILNLDTDVEVTYRIVGDDEANIKENLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GK  GD +S+  PGG   YEI+ V ++
Sbjct: 121 SVNSPIARGLVGKNEGDEVSITTPGGMTDYEIISVQYL 158


>gi|89070192|ref|ZP_01157520.1| transcription elongation factor GreA [Oceanicola granulosus
           HTCC2516]
 gi|89044208|gb|EAR50359.1| transcription elongation factor GreA [Oceanicola granulosus
           HTCC2516]
          Length = 156

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 87/157 (55%), Positives = 121/157 (77%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DKIP+T  GFDK+  EL+  +  ERP II+AISEAR +GDLSENAEY +AKE Q+  EG
Sbjct: 1   MDKIPLTRAGFDKLDAELKHLKSVERPAIIRAISEAREHGDLSENAEYHSAKEKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +I+ AEVID + MS   I FGATV LV++++ ++K+YQIVG+ EAD++ G ++
Sbjct: 61  RIKELEGVISLAEVIDPTRMS-GAIKFGATVELVDEDTDEEKSYQIVGEYEADIERGKLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + SP+ARALIGKE GD + V  PGG+K YE+++V ++
Sbjct: 120 MKSPLARALIGKEEGDSVEVKTPGGDKAYEVVKVSYV 156


>gi|163850521|ref|YP_001638564.1| transcription elongation factor GreA [Methylobacterium extorquens
           PA1]
 gi|218529218|ref|YP_002420034.1| transcription elongation factor GreA [Methylobacterium
           chloromethanicum CM4]
 gi|240137586|ref|YP_002962057.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Methylobacterium extorquens AM1]
 gi|254560057|ref|YP_003067152.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Methylobacterium extorquens DM4]
 gi|163662126|gb|ABY29493.1| transcription elongation factor GreA [Methylobacterium extorquens
           PA1]
 gi|218521521|gb|ACK82106.1| transcription elongation factor GreA [Methylobacterium
           chloromethanicum CM4]
 gi|240007554|gb|ACS38780.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Methylobacterium extorquens AM1]
 gi|254267335|emb|CAX23167.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Methylobacterium extorquens DM4]
          Length = 160

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 94/155 (60%), Positives = 126/155 (81%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           DK+P+T++G+  +++EL+ RQQ ERPRII+AISEARA GDLSENAEY AAKE Q+ NEGR
Sbjct: 4   DKLPITARGYAALEEELKRRQQVERPRIIQAISEARALGDLSENAEYHAAKEAQSHNEGR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELE++I RAE+ID S +SG +I FGA V L+++++ ++K YQ+VG+ EADV+ G VSI
Sbjct: 64  VLELESMIARAEIIDTSKLSGSKIKFGARVKLLDEDTEEEKTYQLVGEPEADVREGRVSI 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SSPIARALIGK +GD + V  PGG K+YE++ V W
Sbjct: 124 SSPIARALIGKAVGDTVEVTTPGGGKSYEVVAVEW 158


>gi|253997071|ref|YP_003049135.1| transcription elongation factor GreA [Methylotenera mobilis JLW8]
 gi|253983750|gb|ACT48608.1| transcription elongation factor GreA [Methylotenera mobilis JLW8]
          Length = 160

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 83/156 (53%), Positives = 118/156 (75%), Gaps = 1/156 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           + PVT +G + +++EL+  +  +RP II+AI+EARA GDLSENAEY++AKE Q+  EGR+
Sbjct: 5   QFPVTVRGAELLKEELQRLRGVDRPNIIQAIAEARAQGDLSENAEYESAKERQSFIEGRI 64

Query: 64  AELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           AELE  ++  ++ID  T  +  R+ FGATV++ + +SGD K YQIVG+ EAD+++G +S+
Sbjct: 65  AELEAKLSNLQIIDPQTLNAEGRVVFGATVNIEDLDSGDNKTYQIVGEDEADIKNGKISV 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SSPIAR LIGK  GDI  V+APGG + YE+L VL+I
Sbjct: 125 SSPIARGLIGKSAGDIAEVSAPGGVREYEVLDVLYI 160


>gi|302879460|ref|YP_003848024.1| transcription elongation factor GreA [Gallionella capsiferriformans
           ES-2]
 gi|302582249|gb|ADL56260.1| transcription elongation factor GreA [Gallionella capsiferriformans
           ES-2]
          Length = 158

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 87/158 (55%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T  G DK++QEL   +  ERP +I AISEARA GDLSENAEY+AAK+ Q   EG
Sbjct: 1   MIKIPLTLVGADKMRQELHKLKTVERPWVINAISEARAQGDLSENAEYEAAKDRQGFVEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ELE  +  A++ID  T  +  R  FG+TV L E NSGD   YQIVGD EAD+++  +
Sbjct: 61  RIIELEGKLGSAQIIDPKTLNANGRCVFGSTVILEEMNSGDVVTYQIVGDDEADIKARKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+  V  PGG + YE+++V +I
Sbjct: 121 SISSPIARALIGKSSGDVAEVKTPGGIREYELIEVQYI 158


>gi|154252759|ref|YP_001413583.1| transcription elongation factor GreA [Parvibaculum lavamentivorans
           DS-1]
 gi|154156709|gb|ABS63926.1| transcription elongation factor GreA [Parvibaculum lavamentivorans
           DS-1]
          Length = 152

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 93/151 (61%), Positives = 125/151 (82%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +TS+G+  +++E+R+ +  ERPRIIKAISEARA+GDLSENAEY AAKE Q LNE R+AEL
Sbjct: 1   MTSEGYKSLEEEIRFLKSVERPRIIKAISEARAHGDLSENAEYHAAKEQQGLNESRVAEL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E+ I+RAEVID+S +SGD + FGATV LV++++ ++ +YQIVG+ EADV+ G VSI+SPI
Sbjct: 61  EDKISRAEVIDVSKLSGDTVMFGATVKLVDEDTEEEVSYQIVGEIEADVKQGRVSITSPI 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARALIGK +GD + V  PGG K+YEIL++ +
Sbjct: 121 ARALIGKSVGDSVEVVTPGGGKSYEILKISF 151


>gi|254708169|ref|ZP_05169997.1| transcription elongation factor GreA [Brucella pinnipedialis
           M163/99/10]
 gi|254710541|ref|ZP_05172352.1| transcription elongation factor GreA [Brucella pinnipedialis B2/94]
 gi|254714723|ref|ZP_05176534.1| transcription elongation factor GreA [Brucella ceti M644/93/1]
 gi|254717784|ref|ZP_05179595.1| transcription elongation factor GreA [Brucella ceti M13/05/1]
 gi|256032034|ref|ZP_05445648.1| transcription elongation factor GreA [Brucella pinnipedialis
           M292/94/1]
 gi|256160231|ref|ZP_05457925.1| transcription elongation factor GreA [Brucella ceti M490/95/1]
 gi|256255437|ref|ZP_05460973.1| transcription elongation factor GreA [Brucella ceti B1/94]
 gi|260169170|ref|ZP_05755981.1| transcription elongation factor GreA [Brucella sp. F5/99]
 gi|261219633|ref|ZP_05933914.1| transcription elongation factor grea [Brucella ceti M13/05/1]
 gi|261222642|ref|ZP_05936923.1| transcription elongation factor grea [Brucella ceti B1/94]
 gi|261315677|ref|ZP_05954874.1| transcription elongation factor grea [Brucella pinnipedialis
           M163/99/10]
 gi|261318115|ref|ZP_05957312.1| transcription elongation factor grea [Brucella pinnipedialis B2/94]
 gi|261322521|ref|ZP_05961718.1| transcription elongation factor grea [Brucella ceti M644/93/1]
 gi|261758684|ref|ZP_06002393.1| transcription elongation factor greA [Brucella sp. F5/99]
 gi|265989145|ref|ZP_06101702.1| transcription elongation factor grea [Brucella pinnipedialis
           M292/94/1]
 gi|265998607|ref|ZP_06111164.1| transcription elongation factor grea [Brucella ceti M490/95/1]
 gi|260921226|gb|EEX87879.1| transcription elongation factor grea [Brucella ceti B1/94]
 gi|260924722|gb|EEX91290.1| transcription elongation factor grea [Brucella ceti M13/05/1]
 gi|261295211|gb|EEX98707.1| transcription elongation factor grea [Brucella ceti M644/93/1]
 gi|261297338|gb|EEY00835.1| transcription elongation factor grea [Brucella pinnipedialis B2/94]
 gi|261304703|gb|EEY08200.1| transcription elongation factor grea [Brucella pinnipedialis
           M163/99/10]
 gi|261738668|gb|EEY26664.1| transcription elongation factor greA [Brucella sp. F5/99]
 gi|262553231|gb|EEZ09065.1| transcription elongation factor grea [Brucella ceti M490/95/1]
 gi|264661342|gb|EEZ31603.1| transcription elongation factor grea [Brucella pinnipedialis
           M292/94/1]
          Length = 157

 Score =  149 bits (377), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 100/157 (63%), Positives = 136/157 (86%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MEKFPMTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61  RINELEDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISS IARALIGK  GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ISSLIARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 157


>gi|237808999|ref|YP_002893439.1| transcription elongation factor GreA [Tolumonas auensis DSM 9187]
 gi|237501260|gb|ACQ93853.1| transcription elongation factor GreA [Tolumonas auensis DSM 9187]
          Length = 158

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 120/158 (75%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++ P+T  G +K+++EL + +  +RP+II+AI+EARA+GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQTPMTVLGAEKLREELEYLKTVQRPQIIQAIAEARAHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +++A++ID++      R+ FGATV++++ ++ ++  Y+IVGD E+D++SGL+
Sbjct: 61  RIQEVEAKLSKAQIIDVTKLPKNGRVIFGATVTVLKCDTEEEITYRIVGDDESDIKSGLL 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI+SPIAR LIGKE+ D+ ++  P G+  +EI+QV +I
Sbjct: 121 SINSPIARGLIGKEVDDVATITTPAGKVDFEIVQVEYI 158


>gi|257454668|ref|ZP_05619924.1| transcription elongation factor GreA [Enhydrobacter aerosaccus
           SK60]
 gi|257447978|gb|EEV22965.1| transcription elongation factor GreA [Enhydrobacter aerosaccus
           SK60]
          Length = 158

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/157 (43%), Positives = 101/157 (64%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +++EL+  +  +RPRI  AI+EAR +GDL ENAEY AA+E Q   E 
Sbjct: 1   MQRYPMTPQGHAALEEELKQLKTVDRPRITAAIAEAREHGDLKENAEYHAAREQQGFCEA 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  AEVID        R+ FG TV +   ++ ++K Y+IVGD EAD ++  +
Sbjct: 61  RIRDIEAKLGGAEVIDPLKLPQEGRVVFGVTVVIENLDTEEQKRYKIVGDDEADFKANKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIAR LIGK  GD   +  P GE  YEI++VL+
Sbjct: 121 SINSPIARGLIGKSEGDEAKIQTPSGEVEYEIVEVLY 157


>gi|300703811|ref|YP_003745413.1| transcription elongation factor [Ralstonia solanacearum CFBP2957]
 gi|299071474|emb|CBJ42794.1| transcription elongation factor [Ralstonia solanacearum CFBP2957]
          Length = 158

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G + ++ EL+  + +ERP ++ AI+EARA GDLSENA+Y AAKE Q   EG
Sbjct: 1   MSTIPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ +  A+VID  S  +  RI FGAT+ L + +SG    YQIVGD EAD+ +G +
Sbjct: 61  RILEIESKLAAAQVIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDTGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+ +V APGGE+ YE+  V ++
Sbjct: 121 SISSPIARALIGKYEGDVATVVAPGGEREYEVRSVKYL 158


>gi|119383180|ref|YP_914236.1| transcription elongation factor GreA [Paracoccus denitrificans
           PD1222]
 gi|166200684|sp|A1AZ46|GREA_PARDP RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|119372947|gb|ABL68540.1| transcription elongation factor GreA [Paracoccus denitrificans
           PD1222]
          Length = 156

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/157 (52%), Positives = 123/157 (78%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  G+D++ +ELR  +  +RP +I+AI+EAR +GDLSENAEY AA+E Q+  EG
Sbjct: 1   MEKIPMTRAGYDQLDEELRELRSVQRPAVIRAIAEAREHGDLSENAEYHAAREKQSFVEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I++RAEVID + ++   I FGATV+LV+++S +++ YQIVG+ EAD++ GL++
Sbjct: 61  RIKELEMILSRAEVIDPTRLN-GSIKFGATVTLVDEDSEEERTYQIVGEAEADLERGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARALIGK+ GD I V  PGG K+YEI+ + ++
Sbjct: 120 IRSPLARALIGKDEGDSIEVVTPGGGKSYEIISIRYV 156


>gi|88857845|ref|ZP_01132487.1| transcription elongation factor greA [Pseudoalteromonas tunicata
           D2]
 gi|88819462|gb|EAR29275.1| transcription elongation factor greA [Pseudoalteromonas tunicata
           D2]
          Length = 158

 Score =  149 bits (377), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 108/158 (68%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G + ++ EL   +  +RP+II  I+ AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQQIPMTVRGVELLRAELNELKTVKRPKIIADIAVAREHGDLKENAEYHAAREEQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++  +VID++ M+ + ++ FG TV++V   +  +  Y+IVGD EA++++ L+
Sbjct: 61  RIQEIEAKLSNVQVIDVTKMANNGKVIFGTTVTIVNVETDAEVTYRIVGDDEANIKNNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GK + D ++++ P G   YEI+ V +I
Sbjct: 121 SVNSPIARGLVGKSVDDAVTISTPKGNVEYEIIAVEYI 158


>gi|194290079|ref|YP_002005986.1| transcription elongation factor grea [Cupriavidus taiwanensis LMG
           19424]
 gi|193223914|emb|CAQ69923.1| transcription elongation factor [Cupriavidus taiwanensis LMG 19424]
          Length = 158

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G + +++EL+  +  ERP +I AISEARA GDLSENAEY AAKE Q   EG
Sbjct: 1   MSTIPITKRGAELLKEELQRLKAVERPAVINAISEARAQGDLSENAEYDAAKEKQAFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A++ID +   +  RI FGATV L +  SG   +YQIVGD EAD+++G +
Sbjct: 61  RILEVEAKLSAAQIIDPTQLDTDGRIVFGATVDLEDLESGSPVSYQIVGDDEADLEAGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK  GD+ +V APGGE+ YE++ V +I
Sbjct: 121 SVSSPIARALIGKFEGDVATVLAPGGEREYEVITVRYI 158


>gi|149909289|ref|ZP_01897945.1| transcription elongation factor GreA [Moritella sp. PE36]
 gi|149807606|gb|EDM67554.1| transcription elongation factor GreA [Moritella sp. PE36]
          Length = 159

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/159 (38%), Positives = 103/159 (64%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M + IP+T++G + ++ EL   +   RP I+ +I+ AR +GDL ENAEY AA+E Q   E
Sbjct: 1   MSNMIPMTARGAENLRIELEHLKTVRRPEIVSSIAVAREHGDLKENAEYHAAREEQGFCE 60

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+ ++E  ++  ++ID++ ++ + R+ FG TV +    + ++  Y +VGD EA+++   
Sbjct: 61  GRVQDIEWKLSNCQIIDVTKIANNGRVIFGCTVKIYNTETEEEITYNLVGDDEANIKENR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SI+SPIAR L+GK + D+  V  PGG   +EI+ V +I
Sbjct: 121 ISINSPIARGLVGKSVDDVAMVKTPGGAIEFEIVSVEYI 159


>gi|148263922|ref|YP_001230628.1| transcription elongation factor GreA [Geobacter uraniireducens Rf4]
 gi|146397422|gb|ABQ26055.1| transcription elongation factor GreA [Geobacter uraniireducens Rf4]
          Length = 158

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 111/157 (70%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   +P+T + ++ +Q++L+   +EERP++I+ I+EAR++GDLSENAEY AAK  Q   E
Sbjct: 1   MSQSVPLTKESYEFLQEDLKRLIKEERPKVIQDIAEARSHGDLSENAEYDAAKHRQGFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL + + RA V+D+S +  D++ FGATV++ +  + ++  Y+IVG+ EAD++ G +
Sbjct: 61  GRIQELSDKLARAYVVDLSNLKPDKVVFGATVTVYDTATEEEVTYKIVGEDEADIKIGKM 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S +SP+ +ALIG +L D + V+ P G K YEI+ + +
Sbjct: 121 SCTSPVGKALIGHKLDDTVKVSVPSGMKEYEIIDIKY 157


>gi|305666121|ref|YP_003862408.1| transcription elongation factor greA [Maribacter sp. HTCC2170]
 gi|88707555|gb|EAQ99798.1| transcription elongation factor greA [Maribacter sp. HTCC2170]
          Length = 158

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 100/156 (64%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +    T++G   ++ EL   +  ERP+  +AI+EAR  GDLSENAEY AAKE Q L E
Sbjct: 1   MSNVSYYTAEGLKNLRDELNQLKDVERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+++LE+ +  A +ID S +   ++   +TV L  + +G +  Y +V + EAD+++G +
Sbjct: 61  LRISKLEDTVANARLIDESQLDTSKVLVLSTVKLKNQANGMEMKYTLVAESEADLKTGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S++SPI + L+GKE+GD   +  P G+ T+EIL++ 
Sbjct: 121 SVNSPIGKGLLGKEVGDTAEITVPNGKITFEILEIT 156


>gi|149202969|ref|ZP_01879940.1| transcription elongation factor GreA [Roseovarius sp. TM1035]
 gi|149143515|gb|EDM31551.1| transcription elongation factor GreA [Roseovarius sp. TM1035]
          Length = 156

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/157 (54%), Positives = 122/157 (77%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T+ G   ++ EL+  +  ERP II+AI+EAR +GDLSENAEY +AKE Q+  EG
Sbjct: 1   MEKIPMTAGGHAALEVELKQLKSVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I++ AEVID + +SG  I FGATV+LV+++SG+++ YQIVG+ EA ++ GL++
Sbjct: 61  RIKELEGILSLAEVIDPAKLSGP-IKFGATVTLVDEDSGEERTYQIVGEHEASIEKGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SPIARALIGKE GD + V  PGG++ YE+++V +I
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGDRGYEVIKVAYI 156


>gi|296532781|ref|ZP_06895460.1| transcription elongation factor GreA [Roseomonas cervicalis ATCC
           49957]
 gi|296266889|gb|EFH12835.1| transcription elongation factor GreA [Roseomonas cervicalis ATCC
           49957]
          Length = 163

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 82/155 (52%), Positives = 120/155 (77%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            K P+T++G  +++ ELR  + EERP +I+AI+EARA+GDLSENAEY AA+E Q+  EGR
Sbjct: 8   QKFPMTAEGLARLEDELRQLKAEERPAVIRAIAEARAHGDLSENAEYHAARERQSFIEGR 67

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +AELE+I+   EVID + +SGD++ FGA V+++++ S ++K Y+IVG  EAD + G +SI
Sbjct: 68  IAELESIVPSVEVIDTTKLSGDQVRFGAYVTIIDEESEEEKTYRIVGAHEADTKLGSISI 127

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SSP+A+AL+GK+LGD + V APGG + YEI +V +
Sbjct: 128 SSPLAKALLGKKLGDSVEVPAPGGARAYEIAKVRF 162


>gi|15602580|ref|NP_245652.1| transcription elongation factor GreA [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|13431536|sp|P57801|GREA_PASMU RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|12721009|gb|AAK02799.1| GreA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 158

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/157 (43%), Positives = 116/157 (73%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G ++++QEL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTIRGAEQLKQELDFLKNTRRPEIINAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  +++ID++ +  + ++ FGAT+ L+  ++ ++ +YQIVGD EA++++GL+
Sbjct: 61  RIQEIEGKLANSQIIDVTKIPNNGKVIFGATILLLNIDTEEEVSYQIVGDDEANIKAGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIAR LIGKE+ D++ +  PGG+  +EIL+V +
Sbjct: 121 SVNSPIARGLIGKEVDDVVVIQTPGGKVEFEILEVEY 157


>gi|317011079|gb|ADU84826.1| transcription elongation factor GreA [Helicobacter pylori
           SouthAfrica7]
          Length = 164

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 104/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L  II+ A+VID S ++  +++FG+T+ ++  ++  + +Y IVG  E+D   GL+S
Sbjct: 61  RIVDLSEIISNAQVIDPSVLTHHKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIA++LIGK  GD +S+  P GE  +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156


>gi|17546241|ref|NP_519643.1| transcription elongation factor GreA [Ralstonia solanacearum
           GMI1000]
 gi|25452993|sp|Q8XZ82|GREA_RALSO RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|17428538|emb|CAD15224.1| probable transcription elongation factor grea (transcript cleavage
           factorgrea) protein [Ralstonia solanacearum GMI1000]
 gi|299066489|emb|CBJ37679.1| transcription elongation factor [Ralstonia solanacearum CMR15]
          Length = 158

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G + ++ EL+  + +ERP ++ AI+EARA GDLSENA+Y AAKE Q   EG
Sbjct: 1   MSTIPITKRGAEMLKDELQRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ +  A+VID +   +  RI FGAT+ L + +SG    YQIVGD EAD+ SG +
Sbjct: 61  RILEIESKLAAAQVIDPAGLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+ +V APGGE+ YE+  V ++
Sbjct: 121 SISSPIARALIGKYEGDVATVVAPGGEREYEVRAVKYL 158


>gi|188527289|ref|YP_001909976.1| transcription elongation factor GreA [Helicobacter pylori Shi470]
 gi|238691911|sp|B2USW4|GREA_HELPS RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|188143529|gb|ACD47946.1| transcription elongation factor GreA [Helicobacter pylori Shi470]
 gi|308062190|gb|ADO04078.1| transcription elongation factor GreA [Helicobacter pylori Cuz20]
          Length = 164

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 104/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L  II  A+VID S ++ ++++FG+T+ ++  ++  + +Y IVG  E+D   GL+S
Sbjct: 61  RIVDLSEIIANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPSKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIA++LIGK  GD +S+  P GE  +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156


>gi|308184650|ref|YP_003928783.1| transcription elongation factor GreA [Helicobacter pylori SJM180]
 gi|308060570|gb|ADO02466.1| transcription elongation factor GreA [Helicobacter pylori SJM180]
 gi|317014274|gb|ADU81710.1| transcription elongation factor GreA [Helicobacter pylori
           Gambia94/24]
          Length = 164

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 105/156 (67%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L  II+ A+VID S ++ ++++FG+T+ ++  ++  + +Y IVG  E+D   GL+S
Sbjct: 61  RIVDLSEIISNAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIA++LIGK  GD +S+  P GE  +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156


>gi|83854862|ref|ZP_00948392.1| transcription elongation factor GreA [Sulfitobacter sp. NAS-14.1]
 gi|83941385|ref|ZP_00953847.1| transcription elongation factor GreA [Sulfitobacter sp. EE-36]
 gi|83842705|gb|EAP81872.1| transcription elongation factor GreA [Sulfitobacter sp. NAS-14.1]
 gi|83847205|gb|EAP85080.1| transcription elongation factor GreA [Sulfitobacter sp. EE-36]
          Length = 156

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/156 (53%), Positives = 121/156 (77%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  G   ++ EL+  +  ERP IIKAI+EAR +GDLSENAEY +AKE Q+  EG
Sbjct: 1   MEKIPMTRAGHTALETELKHLKSVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +I+ A+VID + MS   I FGATV+LV++++ ++K YQIVG+ EA+++ GL++
Sbjct: 61  RIKELEGVISLADVIDPAKMS-GAIKFGATVTLVDEDTDEEKTYQIVGEYEANIEKGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SPIARALIGKE GD + V  PGG+K+YE+L++++
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGDKSYEVLKIVY 155


>gi|292486826|ref|YP_003529696.1| transcription elongation factor greA [Erwinia amylovora CFBP1430]
 gi|292900775|ref|YP_003540144.1| transcription elongation factor [Erwinia amylovora ATCC 49946]
 gi|291200623|emb|CBJ47755.1| transcription elongation factor [Erwinia amylovora ATCC 49946]
 gi|291552243|emb|CBA19280.1| Transcription elongation factor greA [Erwinia amylovora CFBP1430]
 gi|312170894|emb|CBX79153.1| Transcription elongation factor greA [Erwinia amylovora ATCC
           BAA-2158]
          Length = 160

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/160 (43%), Positives = 113/160 (70%), Gaps = 3/160 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T +G DK+++EL   +  +RPRII +I+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTLRGADKLREELEELKTVKRPRIIASIAEAREHGDLKENAEYHAAREEQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTM---SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           R+ E+E  ++ A+VID++ M   +  R+ FGATV+++   + ++  Y+IVGD EAD +  
Sbjct: 61  RIQEIEAKLSNAQVIDVTKMAGNANGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQN 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           L+S++SP+AR L+GK   D+  +  PGG+  YEI++V ++
Sbjct: 121 LISVNSPMARGLVGKLADDVTVIKTPGGDVEYEIIKVEYL 160


>gi|94500165|ref|ZP_01306699.1| transcription elongation factor GreA [Oceanobacter sp. RED65]
 gi|94427738|gb|EAT12714.1| transcription elongation factor GreA [Oceanobacter sp. RED65]
          Length = 158

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T  G   +++EL   ++ ERP++IKAI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQKVPMTVDGEKALREELDQLKKVERPKVIKAIAEAREHGDLKENAEYHAAREQQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++T+    ++ FG TV L++ N+ ++K YQIVG+ EAD+ +G +
Sbjct: 61  RIQDIEGKLSNAQVIDVTTLPQTGKVIFGTTVRLIDANTDEEKQYQIVGEDEADIPNGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S  SPIARALIGKE GD++ V  P GE  YEI QVL++
Sbjct: 121 SAGSPIARALIGKEEGDVVVVKVPNGEIEYEIDQVLYL 158


>gi|194098470|ref|YP_002001530.1| transcription elongation factor GreA [Neisseria gonorrhoeae
           NCCP11945]
 gi|291043955|ref|ZP_06569671.1| transcription elongation factor greA [Neisseria gonorrhoeae DGI2]
 gi|293399156|ref|ZP_06643321.1| transcription elongation factor GreA [Neisseria gonorrhoeae F62]
 gi|193933760|gb|ACF29584.1| GreA [Neisseria gonorrhoeae NCCP11945]
 gi|291012418|gb|EFE04407.1| transcription elongation factor greA [Neisseria gonorrhoeae DGI2]
 gi|291610570|gb|EFF39680.1| transcription elongation factor GreA [Neisseria gonorrhoeae F62]
 gi|317164152|gb|ADV07693.1| transcription elongation factor GreA [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 174

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++QEL+  +   RP +I+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 17  MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 76

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R++ELE+ ++ A +I+ + +  + +I FG TV+L +  + +   YQIVG+ EAD++ G +
Sbjct: 77  RISELEHKLSVAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 136

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + SPIARALIGKE GD   V APGG + Y+I++V +I
Sbjct: 137 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 174


>gi|322380197|ref|ZP_08054428.1| transcription elongation factor GreA [Helicobacter suis HS5]
 gi|321147363|gb|EFX42032.1| transcription elongation factor GreA [Helicobacter suis HS5]
          Length = 161

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 104/154 (67%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K P+++ G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E R+
Sbjct: 2   KEPMSAYGYEKICAELKRLKEIERPEIVKEIDRAREHGDLKENAEYHAAKEKQAFIEARI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            +L  I+  A+VID ST+S  +++FG+TV +++ N+  + +Y IVG  E+D   GL+S  
Sbjct: 62  NDLSRILANAQVIDPSTLSHQKVSFGSTVRILDLNNDKEFSYTIVGSMESDPSRGLISFG 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+A++L+GK  GD ++V  P GE  +EIL + +
Sbjct: 122 SPVAKSLMGKSKGDEVTVLLPSGESEFEILDICY 155


>gi|39937132|ref|NP_949408.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           CGA009]
 gi|192292967|ref|YP_001993572.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           TIE-1]
 gi|81619506|sp|Q6N2H8|GREA_RHOPA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|229485904|sp|B3QJZ1|GREA_RHOPT RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|39650990|emb|CAE29513.1| transcriptional elongation factor greA [Rhodopseudomonas palustris
           CGA009]
 gi|192286716|gb|ACF03097.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           TIE-1]
          Length = 158

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 87/157 (55%), Positives = 122/157 (77%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+KIP+T+ G+  +  EL+ RQ  +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVEKIPMTASGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE+ + RA++ID+S +SGD + FGATV+L+++++  K  +QIVG+ EAD + G +
Sbjct: 61  GRINELEDKLARADIIDVSKLSGDTVKFGATVTLIDEDTEKKAVWQIVGEAEADAKKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+ARALIGK+ G  + V APGG K YEI +V W
Sbjct: 121 SITSPLARALIGKKAGSSVEVVAPGGAKAYEIAKVEW 157


>gi|15611867|ref|NP_223518.1| transcription elongation factor GreA [Helicobacter pylori J99]
 gi|15645485|ref|NP_207660.1| transcription elongation factor GreA [Helicobacter pylori 26695]
 gi|254779167|ref|YP_003057272.1| transcription elongation factor GreA [Helicobacter pylori B38]
 gi|54037216|sp|P64276|GREA_HELPJ RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|54041324|sp|P64275|GREA_HELPY RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|2313994|gb|AAD07908.1| transcription elongation factor GreA (greA) [Helicobacter pylori
           26695]
 gi|4155364|gb|AAD06376.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIPT CLEAVAGE FACTOR)
           [Helicobacter pylori J99]
 gi|254001078|emb|CAX29025.1| Transcription elongation factor GreA (Transcript cleavage factor
           GreA) [Helicobacter pylori B38]
 gi|261839321|gb|ACX99086.1| transcription elongation factor GreA [Helicobacter pylori 52]
          Length = 164

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/156 (42%), Positives = 104/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L  I+  A+VID S ++ ++++FG+T+ ++  ++  + +Y IVG  E+D   GL+S
Sbjct: 61  RIVDLSEIVANAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIA++LIGK  GD +S+  P GE  +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156


>gi|146313249|ref|YP_001178323.1| transcription elongation factor GreA [Enterobacter sp. 638]
 gi|145320125|gb|ABP62272.1| transcription elongation factor GreA [Enterobacter sp. 638]
          Length = 158

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIISAIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VIDI+ +    R+ FGA+V ++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDITKIPNTGRVIFGASVKVLNLDNDEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE  D++ +  PGGE  +EI++V ++
Sbjct: 121 SVNSPIARGLIGKEEEDVVVIRTPGGEVEFEIIKVEYL 158


>gi|291287665|ref|YP_003504481.1| transcription elongation factor GreA [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884825|gb|ADD68525.1| transcription elongation factor GreA [Denitrovibrio acetiphilus DSM
           12809]
          Length = 157

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/156 (49%), Positives = 119/156 (76%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +D+IP+T++G+ ++++EL   +  +R  I+ AI+EAR++GDLSENAEY AAKE Q + E 
Sbjct: 1   MDRIPITTEGYARLKKELEKLKTIDRKEIVAAIAEARSHGDLSENAEYDAAKERQGMIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AELE+ + R +VID  ++SGD+I FGATV++    + ++KNY+IVG  EA++ +G +S
Sbjct: 61  RIAELESKMGRFQVIDTKSLSGDKIVFGATVTIENIETEEQKNYKIVGPDEANISNGTIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ K++GD + V APGGE  YE+L+V +
Sbjct: 121 IMSPLARALVNKKVGDEVLVVAPGGELEYEVLEVKF 156


>gi|108563274|ref|YP_627590.1| transcription elongation factor GreA [Helicobacter pylori HPAG1]
 gi|207092077|ref|ZP_03239864.1| transcription elongation factor GreA [Helicobacter pylori
           HPKX_438_AG0C1]
 gi|208434775|ref|YP_002266441.1| transcription elongation factor [Helicobacter pylori G27]
 gi|210135059|ref|YP_002301498.1| transcription elongation factor GreA [Helicobacter pylori P12]
 gi|123373738|sp|Q1CT06|GREA_HELPH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|238058234|sp|B6JM90|GREA_HELP2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|238058235|sp|B5Z7M6|GREA_HELPG RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|107837047|gb|ABF84916.1| transcription elongation factor [Helicobacter pylori HPAG1]
 gi|208432704|gb|ACI27575.1| transcription elongation factor [Helicobacter pylori G27]
 gi|210133027|gb|ACJ08018.1| transcription elongation factor [Helicobacter pylori P12]
 gi|317009127|gb|ADU79707.1| transcription elongation factor GreA [Helicobacter pylori India7]
 gi|317012671|gb|ADU83279.1| transcription elongation factor GreA [Helicobacter pylori
           Lithuania75]
          Length = 164

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/156 (42%), Positives = 104/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L  I+  A+VID S ++ ++++FG+T+ ++  ++  + +Y IVG  E+D   GL+S
Sbjct: 61  RIVDLSEIVANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIA++LIGK  GD +S+  P GE  +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156


>gi|114330476|ref|YP_746698.1| transcription elongation factor GreA [Nitrosomonas eutropha C91]
 gi|114307490|gb|ABI58733.1| transcription elongation factor GreA [Nitrosomonas eutropha C91]
          Length = 158

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++ IP+T  G +K++ EL   +   RP II AI+EAR++GDLSENAEY AAKE Q   EG
Sbjct: 1   MNAIPITQSGAEKLRAELHEMKTVHRPAIIAAIAEARSHGDLSENAEYDAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A++I+ +   +     FGATV LV+ ++     YQ+VGD EAD++ G +
Sbjct: 61  RIAELESKLSNAQIINPAALNADGACVFGATVDLVDLDTNTAVTYQVVGDDEADIKEGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+  V APGG + YEIL V +I
Sbjct: 121 SISSPIARALIGKYAGDVAEVQAPGGIREYEILDVKYI 158


>gi|331007340|ref|ZP_08330536.1| Transcription elongation factor GreA [gamma proteobacterium
           IMCC1989]
 gi|330418856|gb|EGG93326.1| Transcription elongation factor GreA [gamma proteobacterium
           IMCC1989]
          Length = 153

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/153 (49%), Positives = 106/153 (69%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G D +Q EL   ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q+  EGR+ E+
Sbjct: 1   MTKRGADALQAELDDLKKVQRPRIVQAIAEAREHGDLKENAEYHAAREQQSFCEGRLQEI 60

Query: 67  ENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ +++IDI S     R+ FG TVSL+  ++ +K  YQIVGD EADV+ G +S++SP
Sbjct: 61  EGKLSNSQIIDIMSLPCTGRVIFGVTVSLLNLDTDEKVTYQIVGDDEADVKQGKISVNSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IAR LIGK  GD +++  P GE  YEI  V  I
Sbjct: 121 IARGLIGKSEGDDVAIKTPSGEVEYEIEAVKHI 153


>gi|328542878|ref|YP_004302987.1| transcription elongation factor GreA [polymorphum gilvum
           SL003B-26A1]
 gi|326412624|gb|ADZ69687.1| transcription elongation factor GreA [Polymorphum gilvum
           SL003B-26A1]
          Length = 152

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 90/152 (59%), Positives = 123/152 (80%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G+  +Q EL+ R   ERPRI++AISEARA+GDLSENAEY AAKE Q+ NEGR+AEL
Sbjct: 1   MTAAGYAMLQAELKERTSVERPRIVEAISEARAHGDLSENAEYHAAKEAQSHNEGRIAEL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E+ + RAE+ID+S +SGD + FGATV+L+++++ ++K Y IVGD EADV+ G +SISSPI
Sbjct: 61  EDKLGRAEIIDVSKLSGDTVKFGATVTLIDEDTEEEKQYMIVGDVEADVKQGKISISSPI 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ARALIGK +GD + V+APGG ++YEI  + +I
Sbjct: 121 ARALIGKSVGDSVEVSAPGGSRSYEIEDIKFI 152


>gi|317182174|dbj|BAJ59958.1| transcription elongation factor GreA [Helicobacter pylori F57]
          Length = 164

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 105/156 (67%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L  II  A+VID ST++ ++++FG+T+ ++  ++  + +Y IVG  E+D   GL+S
Sbjct: 61  RIVDLSEIIANAQVIDPSTLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIA++LIGK  GD +S+  P GE  +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156


>gi|316935637|ref|YP_004110619.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           DX-1]
 gi|315603351|gb|ADU45886.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           DX-1]
          Length = 158

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 87/157 (55%), Positives = 122/157 (77%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+KIP+T+ G+  +  EL+ RQ  +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVEKIPMTASGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE+ + RA++ID+S +SGD + FGATV+L+++++  K  +QIVG+ EAD + G +
Sbjct: 61  GRINELEDKLARADIIDVSKLSGDTVKFGATVTLIDEDTEKKAVWQIVGEAEADAKKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+ARALIGK+ G  + V APGG K YEI +V W
Sbjct: 121 SITSPLARALIGKKAGSSVEVVAPGGAKAYEIEKVEW 157


>gi|254437943|ref|ZP_05051437.1| transcription elongation factor GreA subfamily [Octadecabacter
           antarcticus 307]
 gi|198253389|gb|EDY77703.1| transcription elongation factor GreA subfamily [Octadecabacter
           antarcticus 307]
          Length = 156

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 83/156 (53%), Positives = 116/156 (74%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DKIP+T  GF+K+  EL+  +  ERP II+AIS+AR +GDLSENAEY +AKE Q+  EG
Sbjct: 1   MDKIPLTRAGFNKLDAELKHLKSVERPAIIRAISDAREHGDLSENAEYHSAKEKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE  I+ A+VID+S +SG    FGA V+LV++ +  +  YQIVG+ EAD++ G ++
Sbjct: 61  RVKELEGAISLADVIDVSKLSGTV-KFGAHVTLVDEATDKETTYQIVGEYEADIEQGRLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SPIARALIGK+ GD + V  PGG K+YEIL +++
Sbjct: 120 MKSPIARALIGKDEGDSVEVRTPGGVKSYEILTIVF 155


>gi|119504338|ref|ZP_01626418.1| GreA/GreB family elongation factor [marine gamma proteobacterium
           HTCC2080]
 gi|119459846|gb|EAW40941.1| GreA/GreB family elongation factor [marine gamma proteobacterium
           HTCC2080]
          Length = 158

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T  G   ++ EL   ++E+RPRII+AI+EAR +GDL ENAEY AA+E Q+  EG
Sbjct: 1   MNKVPMTVAGEQSLRDELDRLKREDRPRIIQAIAEAREHGDLKENAEYHAAREQQSFAEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E+ ++ A++ID+S +    ++ FG TV L+   + +   Y+IVG+ E+DV++ L+
Sbjct: 61  RIQDIEHKLSHAQIIDVSAIPNTGKVIFGTTVDLINTENDNPVTYRIVGEDESDVKANLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARAL+GK  GD + V AP G+  YEI +V  I
Sbjct: 121 SVSSPIARALVGKSEGDEVVVKAPSGDIYYEIERVHHI 158


>gi|259500541|ref|ZP_05743443.1| transcription elongation factor GreA [Lactobacillus iners DSM
           13335]
 gi|315653624|ref|ZP_07906544.1| transcription elongation factor GreA [Lactobacillus iners ATCC
           55195]
 gi|259167925|gb|EEW52420.1| transcription elongation factor GreA [Lactobacillus iners DSM
           13335]
 gi|315488986|gb|EFU78628.1| transcription elongation factor GreA [Lactobacillus iners ATCC
           55195]
          Length = 174

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 105/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K+  +T++G DK+Q EL+  +  +RP +I+ I  AR++GDLSEN+EY AAK+ Q+  
Sbjct: 14  MAEKVYPMTAEGKDKLQNELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSAV 73

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E ++  A+VID  ++  + ++ G TV+  E  + D + Y IVG  E+D  SG 
Sbjct: 74  EHRIAQIEEMLKYAQVIDAGSVDPNEVSIGKTVTFTEVGTDDSEMYTIVGSDESDPLSGK 133

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK+ GD++S+N PGG     I +V 
Sbjct: 134 ISNDSPIAKALLGKKKGDVVSINTPGGLFEVTIDEVT 170


>gi|308063340|gb|ADO05227.1| transcription elongation factor GreA [Helicobacter pylori Sat464]
          Length = 164

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 104/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L  II  A+VID S ++ ++++FG+T+ ++  ++  + +Y IVG  E+D   GL+S
Sbjct: 61  RIVDLSEIIANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIA++LIGK  GD +S+  P GE  +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156


>gi|261837908|gb|ACX97674.1| transcription elongation factor [Helicobacter pylori 51]
 gi|317180628|dbj|BAJ58414.1| transcription elongation factor GreA [Helicobacter pylori F32]
 gi|332673330|gb|AEE70147.1| transcription elongation factor GreA [Helicobacter pylori 83]
          Length = 164

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 104/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L  II  A+VID S ++ ++++FG+T+ ++  ++  + +Y IVG  E+D   GL+S
Sbjct: 61  RIVDLSEIIANAQVIDPSALAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIA++LIGK  GD +S+  P GE  +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156


>gi|296136187|ref|YP_003643429.1| GreA/GreB family elongation factor [Thiomonas intermedia K12]
 gi|295796309|gb|ADG31099.1| GreA/GreB family elongation factor [Thiomonas intermedia K12]
          Length = 158

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 84/158 (53%), Positives = 115/158 (72%), Gaps = 2/158 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M+   P+T KG ++++QEL   +  ERP +I+AI+EARA GDLSENAEY AA++ Q   E
Sbjct: 1   MMA-TPMTRKGAEQLKQELHRLKTIERPAVIQAIAEARAQGDLSENAEYDAARDKQGFIE 59

Query: 61  GRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+A++E  +  A++ID S   +  R+ FGATV L +++SGD+  YQIVGD EAD++ G 
Sbjct: 60  GRIADIEGKLGTAQIIDPSELRADGRVVFGATVELSDESSGDEITYQIVGDDEADLKQGR 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +SI+SPIARALIGKE GD+  V APGG + YEIL V +
Sbjct: 120 ISINSPIARALIGKESGDVAQVAAPGGVRQYEILAVHY 157


>gi|291279481|ref|YP_003496316.1| transcription elongation factor GreA [Deferribacter desulfuricans
           SSM1]
 gi|290754183|dbj|BAI80560.1| transcription elongation factor GreA [Deferribacter desulfuricans
           SSM1]
          Length = 157

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/156 (51%), Positives = 116/156 (74%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +D+IP+T +G++K++ EL   ++ ER  +IKAI EAR +GDLSENAEY AAKE Q + E 
Sbjct: 1   MDRIPITKEGYEKVKAELERLKKVERREVIKAIEEARGHGDLSENAEYDAAKERQGMIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AELE+ + R EVID S + GD++ FGATV +   ++G+ K Y+IVG  E+D+  G +S
Sbjct: 61  RIAELESKMARFEVIDTSKLKGDKVVFGATVKIENLDTGEIKTYKIVGPDESDISKGYIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SPIARAL+GK++GD ++V AP GE  YEIL++ +
Sbjct: 121 IISPIARALVGKKVGDDVTVIAPNGEVEYEILEISF 156


>gi|83747766|ref|ZP_00944800.1| Transcription elongation factor greA (transcription cleavage
           factor) [Ralstonia solanacearum UW551]
 gi|83725538|gb|EAP72682.1| Transcription elongation factor greA (transcription cleavage
           factor) [Ralstonia solanacearum UW551]
          Length = 158

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G + +++EL+  + +ERP ++ AI+EARA GDLSENA+Y AAKE Q   EG
Sbjct: 1   MSTIPITKRGAEMLKEELQRLKTKERPAVVTAIAEARAQGDLSENADYDAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ +  A+VID  S  +  RI FGAT+ L + +SG    YQIVGD EAD+ +G +
Sbjct: 61  RILEIESKLAAAQVIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDTGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGK  GD+ +V APGGE+ YE+  V ++
Sbjct: 121 SISSPIARALIGKYEGDVATVVAPGGEREYEVRSVKYL 158


>gi|292493676|ref|YP_003529115.1| transcription elongation factor GreA [Nitrosococcus halophilus Nc4]
 gi|291582271|gb|ADE16728.1| transcription elongation factor GreA [Nitrosococcus halophilus Nc4]
          Length = 158

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 106/157 (67%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T KG  ++++EL+  +   RPR++ AI+EARA+GDL ENAEY AA+E Q   EG
Sbjct: 1   MSKVPLTEKGAQQLREELQELKTVVRPRVVAAIAEARAHGDLKENAEYHAAREEQGFVEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ +LE+ +  A++ID+       R+ FG TV LV  ++  + +YQIVGD EAD++   +
Sbjct: 61  RIRDLEHQLAHAQIIDVNKLQKDGRVVFGVTVDLVNMDTDGEVSYQIVGDLEADIKENKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIARALIGK  GD + V AP G   YEI  V +
Sbjct: 121 SVNSPIARALIGKREGDEVQVQAPSGVVIYEIAAVCY 157


>gi|15616988|ref|NP_240201.1| transcription elongation factor GreA [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219681740|ref|YP_002468126.1| transcription elongation factor GreA [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682295|ref|YP_002468679.1| transcription elongation factor GreA [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471441|ref|ZP_05635440.1| transcription elongation factor GreA [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|11386814|sp|P57464|GREA_BUCAI RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799549|sp|B8D9G7|GREA_BUCA5 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799550|sp|B8D7R9|GREA_BUCAT RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|25321409|pir||G84974 transcription elongation factor greA [imported] - Buchnera sp.
           (strain APS)
 gi|10039053|dbj|BAB13087.1| transcription elongation factor greA [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|219622028|gb|ACL30184.1| transcription elongation factor GreA [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624583|gb|ACL30738.1| transcription elongation factor GreA [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311086121|gb|ADP66203.1| transcription elongation factor GreA [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086694|gb|ADP66775.1| transcription elongation factor GreA [Buchnera aphidicola str.
           TLW03 (Acyrthosiphon pisum)]
 gi|311087279|gb|ADP67359.1| transcription elongation factor GreA [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087791|gb|ADP67870.1| transcription elongation factor GreA [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 159

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/159 (45%), Positives = 118/159 (74%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M++ IP+T +G +K+++EL+  +   RPRII AI+EAR +GDL ENAEY +A+E Q+  E
Sbjct: 1   MINLIPMTVRGAEKLRRELKKLKSINRPRIIAAIAEAREHGDLKENAEYHSAREEQSFCE 60

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+ E+E  ++ +++ID++ +S + R+ FG+TVS++   + +K  Y+IVGD E+D +  L
Sbjct: 61  GRIKEIELKLSNSQIIDVTKISNNGRVIFGSTVSILNIKNNEKFTYRIVGDDESDFKKNL 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SI+SPIAR LIGKE+ D++ +  PGG+  Y+IL++ +I
Sbjct: 121 ISINSPIARGLIGKEINDVVIICTPGGDVEYKILKINYI 159


>gi|260061565|ref|YP_003194645.1| transcription elongation factor GreA [Robiginitalea biformata
           HTCC2501]
 gi|88785697|gb|EAR16866.1| putative transcription elongation factor [Robiginitalea biformata
           HTCC2501]
          Length = 157

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 98/156 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T +G  K++ EL   +  ERP+  +AI+EAR  GDLSENAEY AAKE Q L E
Sbjct: 1   MSKVSYYTPEGMKKLKDELNHLRDVERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+LE ++  A +ID S +   ++   +TV L  + +G + +Y +V + EAD+++G +
Sbjct: 61  MKIAKLEEVVANARLIDESQLDTSKVLVLSTVKLRNQQNGQELSYTLVAESEADLKAGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S++SPI + L+GK++GD   +  P G   +++L++ 
Sbjct: 121 SVTSPIGKGLLGKKVGDTAEIQVPNGTLKFDVLEIT 156


>gi|326317398|ref|YP_004235070.1| transcription elongation factor GreA [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374234|gb|ADX46503.1| transcription elongation factor GreA [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 158

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/157 (51%), Positives = 114/157 (72%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL   +  ERP +I AI+EARA GDLSENAEY+AAK+ Q   EG
Sbjct: 1   MATIPITKRGAEKLKEELHRLKTVERPAVINAIAEARAQGDLSENAEYEAAKDRQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID +   +G ++ FGATV L ++ SGD   YQIVG+ EAD++ GL+
Sbjct: 61  RIQEVEGKLSAAQVIDPAQLDAGGKVVFGATVDLEDEESGDPVTYQIVGEDEADLKQGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ++SSPIARALIGKE GD   V APGG + YE++ V +
Sbjct: 121 NVSSPIARALIGKEEGDTAEVQAPGGLRRYEVVAVRY 157


>gi|254448859|ref|ZP_05062315.1| GreA/GreB family elongation factor [gamma proteobacterium HTCC5015]
 gi|198261549|gb|EDY85838.1| GreA/GreB family elongation factor [gamma proteobacterium HTCC5015]
          Length = 159

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M DK+P+T +G + +++EL   + +ERP II+AI+EAR +GDL ENAEY AA+E Q   E
Sbjct: 1   MTDKVPMTVEGAEAMREELTQLKSKERPEIIQAIAEAREHGDLKENAEYHAARERQGFVE 60

Query: 61  GRMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+ E+E  ++ A++ID+ S     ++ FG TV L + ++ ++K Y+IVG+ EA++Q G 
Sbjct: 61  GRIKEIEGKLSYAQIIDVQSLPKSGKVVFGVTVELCDIDTEEEKTYKIVGEDEANIQQGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +S +SP+AR+LIG+E GD + V  PGG+  YEIL V +
Sbjct: 121 ISFTSPVARSLIGREEGDCVLVKTPGGDHEYEILAVRY 158


>gi|119774088|ref|YP_926828.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
 gi|119766588|gb|ABL99158.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
          Length = 158

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T  G +++++EL   + + RP+I +AI+ AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MNKVPMTVVGAEQLRKELDILKFDRRPKITEAIAAARELGDLKENAEYHAAREEQGICEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++ID++ M+ + RI FGATV+++  ++  +  Y+IVGD EA+++  L+
Sbjct: 61  RIRDIEGKLSNAQIIDVTKMANNGRIIFGATVTILNLDTDAEVTYRIVGDDEANIKENLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GK LGD +++  P G   YE+++V +I
Sbjct: 121 SVNSPIARGLVGKNLGDEVNITTPAGVTAYEVVEVQYI 158


>gi|313144398|ref|ZP_07806591.1| transcription elongation factor greA [Helicobacter cinaedi CCUG
           18818]
 gi|313129429|gb|EFR47046.1| transcription elongation factor greA [Helicobacter cinaedi CCUG
           18818]
          Length = 162

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 110/157 (70%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +  P+T+ G++K+  EL+  ++ ERP+I+  I  AR++GDL ENAEY AA+E Q   E
Sbjct: 1   MAE--PMTNYGYEKLCAELKNLKEVERPKIVVEIDVARSHGDLKENAEYHAAREKQAFIE 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ EL  ++++A+VID +++  ++++FG++V ++  ++  +  Y +VG  E++   GL+
Sbjct: 59  ARINELGLMLSQAQVIDPASLKHNKVSFGSSVKILNLDTDKEFVYTLVGSMESNPSKGLI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+SSPIA+AL+GK+ GD +S+  P GE  +EIL+V +
Sbjct: 119 SVSSPIAKALMGKKQGDEVSIMLPSGENEFEILEVFY 155


>gi|46203896|ref|ZP_00050819.2| COG0782: Transcription elongation factor [Magnetospirillum
           magnetotacticum MS-1]
          Length = 165

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 94/155 (60%), Positives = 126/155 (81%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           DK+P+T++G+  +++EL+ RQQ ERPRII+AISEARA GDLSENAEY AAKE Q+ NEGR
Sbjct: 9   DKLPITARGYAALEEELKRRQQVERPRIIQAISEARALGDLSENAEYHAAKEAQSHNEGR 68

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELE++I RAE+ID S +SG +I FGA V LV++++ ++K YQ+VG+ EADV+ G VSI
Sbjct: 69  VLELESMIARAEIIDTSKLSGSKIKFGARVKLVDEDTEEEKTYQLVGEPEADVREGRVSI 128

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SSPIARALIGK +GD + V  PGG K+YE++ + W
Sbjct: 129 SSPIARALIGKGVGDTVEVTTPGGGKSYEVVAIEW 163


>gi|261856155|ref|YP_003263438.1| transcription elongation factor GreA [Halothiobacillus neapolitanus
           c2]
 gi|261836624|gb|ACX96391.1| transcription elongation factor GreA [Halothiobacillus neapolitanus
           c2]
          Length = 158

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/156 (48%), Positives = 115/156 (73%), Gaps = 1/156 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           + P+T+ G  K++ EL+  +  ERPRII+AI+EAR  GDL ENAEY AA+E Q   EGR+
Sbjct: 2   QTPMTAAGAAKLEAELKQLRGVERPRIIQAIAEARDLGDLKENAEYHAAREEQGFVEGRI 61

Query: 64  AELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
            E+E  ++ A +ID+S     D++ FGATV +++ +S ++  Y+IVGD EAD++S ++S+
Sbjct: 62  KEIEAKLSHANIIDVSRLPPSDKVIFGATVRVLDVDSDEEITYKIVGDDEADIKSNMISV 121

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            SPIARAL+GK LGD ++V+APGG++ +EI +V +I
Sbjct: 122 HSPIARALVGKSLGDEVTVDAPGGKRVFEITEVQYI 157


>gi|332291987|ref|YP_004430596.1| transcription elongation factor GreA [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170073|gb|AEE19328.1| transcription elongation factor GreA [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 158

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 95/155 (61%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T +G  K++ EL   +  ERP+  + I++AR  GDLSENAEY AAKE Q + E
Sbjct: 1   MSKVNYYTPEGLKKLKDELNHLRDVERPKASQDIADARDKGDLSENAEYDAAKEAQGMLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+A+LEN+ + A +ID S +   ++   +TV +  + +G    Y++V   EAD++ GL+
Sbjct: 61  MRIAKLENLASNARIIDESQLDTSKVLVHSTVKIKNQINGATMTYKLVAQNEADIKKGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SPI + L+GKE+G++  +  P G   ++++ +
Sbjct: 121 SVDSPIGKGLLGKEVGEVAEIQVPSGVMKFDVVSI 155


>gi|85705718|ref|ZP_01036815.1| transcription elongation factor GreA [Roseovarius sp. 217]
 gi|85669708|gb|EAQ24572.1| transcription elongation factor GreA [Roseovarius sp. 217]
          Length = 156

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 82/157 (52%), Positives = 120/157 (76%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T+ G   ++ EL+  +  ERP II+AI+EAR +GDLSENAEY +AKE Q+  EG
Sbjct: 1   MEKIPMTAGGHAALEVELKQLKSVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I++ AEVID + +S   I FGATV+LV++++ +++ YQIVG+ EA ++ GL++
Sbjct: 61  RIKELEGILSLAEVIDPAKLS-GAIKFGATVTLVDEDTDEERTYQIVGEHEASIEKGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SPIARALIGKE GD + V  PGG++ YE+++V +I
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGDRAYEVIKVAYI 156


>gi|84683984|ref|ZP_01011886.1| Transcription elongation factor greA [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667737|gb|EAQ14205.1| Transcription elongation factor greA [Rhodobacterales bacterium
           HTCC2654]
          Length = 156

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 84/157 (53%), Positives = 116/157 (73%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KI +T  G+  +  EL+  +  ERP +I AISEAR +GDLSENAEY AA+E Q+  EG
Sbjct: 1   MEKILLTRAGYTALNDELKKLKSVERPAVIAAISEAREHGDLSENAEYHAAREKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+II  AEVID + +S   I F ATV LV++++ ++K YQIVG+ EAD++ G ++
Sbjct: 61  RVKELESIIGLAEVIDPAKLS-GAIKFSATVKLVDEDTDEEKTYQIVGEPEADLEKGKLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARALIGKE GD + V  PGGEK+YEIL++ +I
Sbjct: 120 IKSPLARALIGKEEGDSVEVRTPGGEKSYEILEIEYI 156


>gi|120556264|ref|YP_960615.1| transcription elongation factor GreA [Marinobacter aquaeolei VT8]
 gi|120326113|gb|ABM20428.1| transcription elongation factor GreA [Marinobacter aquaeolei VT8]
          Length = 159

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/159 (47%), Positives = 115/159 (72%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D++P+T  G  ++++EL+  + E+RPR+I AI++AR +GDL ENAEY AA+E Q+  E
Sbjct: 1   MADRVPMTKTGEARLREELKKLKSEDRPRVIAAIADAREHGDLKENAEYHAAREQQSFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+ E+E  ++ A+VID++TM    ++ FG TV LV   + ++  YQIVG+ EAD+++G 
Sbjct: 61  GRIQEIEGKLSVAQVIDVTTMENTGKVIFGTTVHLVNMETDEEVTYQIVGEDEADIKAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S+SSPIARALIGK  GD++++  P G   YEI +V +I
Sbjct: 121 LSVSSPIARALIGKNEGDVVAIRIPSGTVEYEISEVEYI 159


>gi|325267980|ref|ZP_08134627.1| transcription elongation factor GreA [Kingella denitrificans ATCC
           33394]
 gi|324980521|gb|EGC16186.1| transcription elongation factor GreA [Kingella denitrificans ATCC
           33394]
          Length = 158

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/157 (51%), Positives = 115/157 (73%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T  G ++++ EL+  +   RP II+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 1   MKKIPLTVNGAEQLKAELQKLKSVARPAIIEAIAEARSHGDLSENAEYEAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELEN +  A++I+   +  + +I FGATV L++ ++ +K  YQIVGD EAD++   +
Sbjct: 61  RIAELENKLAHAQIINPKEIHAEGKIVFGATVQLLDLDTDEKAQYQIVGDDEADIKLFKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIARALIGKE GDI  V AP G + YEIL+V +
Sbjct: 121 SVNSPIARALIGKEEGDIAEVQAPSGLREYEILKVAY 157


>gi|308183020|ref|YP_003927147.1| transcription elongation factor GreA [Helicobacter pylori PeCan4]
 gi|308065205|gb|ADO07097.1| transcription elongation factor GreA [Helicobacter pylori PeCan4]
          Length = 164

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/156 (41%), Positives = 104/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L  I+  A+VID S ++ ++++FG+T+ ++  ++  + +Y IVG  E++   GL+S
Sbjct: 61  RIVDLSEIVANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESNPAKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIA++LIGK  GD +S+  P GE  +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156


>gi|329910107|ref|ZP_08275233.1| Transcription elongation factor GreA [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546260|gb|EGF31291.1| Transcription elongation factor GreA [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 158

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/158 (50%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  +P+T  G   +++EL   + +ERP II AISEARA GDLSENAEY AAKE Q+  EG
Sbjct: 1   MSTVPITKFGAQLLKEELHRLKTKERPSIINAISEARAQGDLSENAEYDAAKERQSFIEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+++LE  +  +++ID  +  +  RI FG+TV L +  +GDK  YQIVG  EAD++   V
Sbjct: 61  RISDLEGKLGSSQIIDPLTLEADGRIVFGSTVYLEDLETGDKVTYQIVGTDEADLKQLKV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIGK  GD++ V AP G + YE+L+V +I
Sbjct: 121 SVTSPIARALIGKVAGDVVGVQAPAGVREYEVLEVRYI 158


>gi|71891884|ref|YP_277614.1| transcription elongation factor GreA [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|123747831|sp|Q493U4|GREA_BLOPB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|71795990|gb|AAZ40741.1| transcription elongation factor [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 158

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/157 (45%), Positives = 110/157 (70%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G +K+++EL + +   RP IIK ISEAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKRIPMTLRGAEKLREELDYLRNVLRPEIIKNISEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ +  A +IDI+   + D++ FGATV +   ++  ++ Y IVGD EA+++  ++
Sbjct: 61  RIQEIESKLFNAHIIDITKLTTDDKVVFGATVGVENLDTTYRQTYSIVGDDEANLKEHMI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIAR LIG + GDI+ +N P G+  Y+ILQV +
Sbjct: 121 SINSPIARGLIGHKEGDIVRINTPKGKVRYKILQVKY 157


>gi|85715963|ref|ZP_01046940.1| transcription elongation factor GreA [Nitrobacter sp. Nb-311A]
 gi|85697161|gb|EAQ35042.1| transcription elongation factor GreA [Nitrobacter sp. Nb-311A]
          Length = 158

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 122/158 (77%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MVDK+P+T  G   +  EL+ RQ  +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVDKVPMTRGGHAALADELKKRQSVDRPRIIEQIAEARSHGDLSENAEYHAAKEEQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+AELE+ + RA++ID+S +SGD I FGATV+L+++++  K  +QIVG+ EAD + G +
Sbjct: 61  GRIAELEDKLARADIIDVSKLSGDTIMFGATVTLIDEDTDKKAVWQIVGEAEADAKQGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI+SP+ARALIGK+ G  + V APGG K YEI +V W+
Sbjct: 121 SITSPLARALIGKKKGSSVEVVAPGGAKAYEIAKVEWL 158


>gi|146278508|ref|YP_001168667.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC
           17025]
 gi|166200695|sp|A4WVE8|GREA_RHOS5 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|145556749|gb|ABP71362.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC
           17025]
          Length = 156

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 81/157 (51%), Positives = 120/157 (76%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  GF  +  EL+  +  ERP +I+AI+EAR +GDLSENAEY AA+E Q+  EG
Sbjct: 1   MEKIPMTRAGFAALDDELKLLKTVERPAVIRAIAEAREHGDLSENAEYHAAREKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +++ AEVID + +SG  I FGATV+++++ + ++K YQIVG+ EAD+++GL++
Sbjct: 61  RIKELEALLSLAEVIDPARLSGS-IKFGATVTILDEETEEEKTYQIVGEAEADIENGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARALIGK+ GD I V  PGGE+ YE++ V ++
Sbjct: 120 IKSPLARALIGKDEGDSIEVKTPGGERGYEVVSVRFV 156


>gi|322379587|ref|ZP_08053924.1| transcription elongation factor GreA [Helicobacter suis HS1]
 gi|321147981|gb|EFX42544.1| transcription elongation factor GreA [Helicobacter suis HS1]
          Length = 161

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/154 (44%), Positives = 104/154 (67%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K P+++ G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E R+
Sbjct: 2   KEPMSAYGYEKICAELKRLKEIERPEIVKEIDRAREHGDLKENAEYHAAKEKQVFIEARI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            +L  I+  A+VID ST+S  +++FG+TV +++ N+  + +Y IVG  E+D   GL+S  
Sbjct: 62  NDLSRILANAQVIDPSTLSHQKVSFGSTVRILDLNNDKEFSYTIVGSMESDPSRGLISFG 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+A++L+GK  GD ++V  P GE  +EIL + +
Sbjct: 122 SPVAKSLMGKSKGDEVTVLLPSGESEFEILDICY 155


>gi|53803860|ref|YP_114288.1| transcription elongation factor GreA [Methylococcus capsulatus str.
           Bath]
 gi|81681779|sp|Q607B0|GREA_METCA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|53757621|gb|AAU91912.1| transcription elongation factor GreA [Methylococcus capsulatus str.
           Bath]
          Length = 158

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T++G +K+++EL   +   RPR+I+AI+EARA+GDL ENAEYQAA+E Q   EG
Sbjct: 1   MNKTPMTTRGAEKLREELNHLKTVARPRVIEAIAEARAHGDLKENAEYQAAREQQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A++ID++    G ++ FGAT  + +  SG+   YQIVG+ EA+++ G +
Sbjct: 61  RIKEIEAKLANAQIIDVTRLNPGGKVVFGATAEIEDLASGEVVTYQIVGEDEAEIKEGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIGK+ GD+ +V APGG + YEI+ V ++
Sbjct: 121 SVTSPIARALIGKQEGDVATVQAPGGTREYEIVSVRYV 158


>gi|309785509|ref|ZP_07680140.1| transcription elongation factor GreA domain protein [Shigella
           dysenteriae 1617]
 gi|25321427|pir||D91136 transcription elongation factor GreA ECs4060 [imported] -
           Escherichia coli (strain O157:H7, substrain RIMD
           0509952)
 gi|25321434|pir||G85981 transcription elongation factor greA [similarity] - Escherichia
           coli (strain O157:H7, substrain EDL933)
 gi|12517796|gb|AAG58315.1|AE005547_1 transcription elongation factor: cleaves 3' nucleotide of paused
           mRNA [Escherichia coli O157:H7 str. EDL933]
 gi|606119|gb|AAA57982.1| greA [Escherichia coli str. K-12 substr. MG1655]
 gi|13363533|dbj|BAB37483.1| transcription elongation factor GreA [Escherichia coli O157:H7 str.
           Sakai]
 gi|73857195|gb|AAZ89902.1| transcription elongation factor [Shigella sonnei Ss046]
 gi|81242643|gb|ABB63353.1| transcription elongation factor [Shigella dysenteriae Sd197]
 gi|81246992|gb|ABB67700.1| transcription elongation factor [Shigella boydii Sb227]
 gi|209758228|gb|ACI77426.1| transcription elongation factor GreA [Escherichia coli]
 gi|209758230|gb|ACI77427.1| transcription elongation factor GreA [Escherichia coli]
 gi|209758232|gb|ACI77428.1| transcription elongation factor GreA [Escherichia coli]
 gi|209758234|gb|ACI77429.1| transcription elongation factor GreA [Escherichia coli]
 gi|209758236|gb|ACI77430.1| transcription elongation factor GreA [Escherichia coli]
 gi|308926629|gb|EFP72105.1| transcription elongation factor GreA domain protein [Shigella
           dysenteriae 1617]
 gi|323154395|gb|EFZ40596.1| transcription elongation factor GreA domain protein [Escherichia
           coli EPECa14]
 gi|323173559|gb|EFZ59188.1| transcription elongation factor GreA domain protein [Escherichia
           coli LT-68]
 gi|327251272|gb|EGE62961.1| transcription elongation factor GreA domain protein [Escherichia
           coli STEC_7v]
          Length = 153

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/153 (45%), Positives = 111/153 (72%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EGR+ ++
Sbjct: 1   MTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDI 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ A+VID++ M  + R+ FGATV+++  +S +++ Y+IVGD EAD +  L+S++SP
Sbjct: 61  EAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLISVNSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IAR LIGKE  D++ +  PGGE  +E+++V ++
Sbjct: 121 IARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL 153


>gi|307637553|gb|ADN80003.1| Transcription elongation factor [Helicobacter pylori 908]
 gi|325996144|gb|ADZ51549.1| Transcription elongation factor [Helicobacter pylori 2018]
 gi|325997740|gb|ADZ49948.1| Transcription elongation factor [Helicobacter pylori 2017]
          Length = 164

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 106/156 (67%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MNKEPMSMHGYNKICTELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L  II+ A+VID S ++ ++++FG+T+ ++  ++G + +Y IVG  E+D   GL+S
Sbjct: 61  RIVDLSEIISNAQVIDPSALAHNKVSFGSTIKILNLDNGKEFSYTIVGSVESDPAKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIA++LIGK  GD +S+  P GE  +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156


>gi|254476447|ref|ZP_05089833.1| transcription elongation factor GreA [Ruegeria sp. R11]
 gi|214030690|gb|EEB71525.1| transcription elongation factor GreA [Ruegeria sp. R11]
          Length = 156

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/156 (50%), Positives = 120/156 (76%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  G   ++ EL+  +  ERP II+AI+EAR  GDLSENAEY +A+E Q+  EG
Sbjct: 1   MEKIPMTPTGHAALEAELKNLKSVERPAIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I++ A+VI+ + +SG  I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61  RIKELEGILSLADVINPAKLSGS-IKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SPIARALIGKE GD + V  PGGE++YEIL +++
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGERSYEILTIVY 155


>gi|255318889|ref|ZP_05360115.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Acinetobacter radioresistens SK82]
 gi|262378856|ref|ZP_06072013.1| transcription elongation factor GreB [Acinetobacter radioresistens
           SH164]
 gi|255304145|gb|EET83336.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Acinetobacter radioresistens SK82]
 gi|262300141|gb|EEY88053.1| transcription elongation factor GreB [Acinetobacter radioresistens
           SH164]
          Length = 158

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 101/158 (63%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +++EL   +  ERPRI  AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQRYPMTPEGKTALEKELHQLKTVERPRITAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A+VIDI       R+ FG TV++   ++ ++K Y+IVGD EAD +   +
Sbjct: 61  RIQDIEGKLGAAQVIDIKDLEQNGRVVFGVTVTIENLDTEEQKTYKIVGDDEADFKINKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GK  GD   +  P GE  YEI+ V +I
Sbjct: 121 SVNSPIARGLLGKSEGDEAKIVTPQGEVEYEIVSVEYI 158


>gi|254512527|ref|ZP_05124594.1| transcription elongation factor GreA [Rhodobacteraceae bacterium
           KLH11]
 gi|221536238|gb|EEE39226.1| transcription elongation factor GreA [Rhodobacteraceae bacterium
           KLH11]
          Length = 156

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/156 (48%), Positives = 114/156 (73%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  G   ++ EL+  +  ERP II+AI+ AR  GDL ENAEY +A+E Q   EG
Sbjct: 1   MEKIPMTPAGNAALEAELKNLKSVERPAIIEAIASARELGDLKENAEYHSAREKQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I++ A+VID S ++   I FGA V+LV++++ ++K +QIVG+ EA++++GL++
Sbjct: 61  RIKELEGILSLADVIDPSKLA-GAIKFGAKVTLVDEDTDEEKTWQIVGEYEANIEAGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SPIARALIGKE GD + V  PGG ++YE+L + +
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGVRSYEVLSIQY 155


>gi|91776106|ref|YP_545862.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
 gi|91710093|gb|ABE50021.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
          Length = 165

 Score =  148 bits (373), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 54/159 (33%), Positives = 89/159 (55%), Gaps = 2/159 (1%)

Query: 1   MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M D K  +T +G+ +++ E     + ERP+++  ++ A + GD SEN +Y   K+     
Sbjct: 1   MADQKNYITPEGYARLKDEFEQLYKVERPKVVSDVAWAASNGDRSENGDYIYGKKRLRQI 60

Query: 60  EGRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           + R+  L   +  A V+D +     ++I FGA V L   +   + +Y+IVG  E D   G
Sbjct: 61  DSRLRFLMKRMDIAVVVDPAQQQDLEKIYFGAWVELYSIDKDSEHHYRIVGQDELDPGKG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +S  SP+ARAL+GK+ GD+I V  P GE+ +EI+ V +
Sbjct: 121 YISWISPLARALLGKQPGDVIRVETPAGEERFEIVDVSY 159


>gi|297380066|gb|ADI34953.1| transcription elongation factor GreA [Helicobacter pylori v225d]
          Length = 164

 Score =  148 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/156 (42%), Positives = 104/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L  II  A+VID S ++ ++++FG+T+ ++  ++  + +Y IVG  E++   GL+S
Sbjct: 61  RIVDLSEIIANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESNPAKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIA++LIGK  GD +S+  P GE  +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDIYY 156


>gi|109898530|ref|YP_661785.1| transcription elongation factor GreA [Pseudoalteromonas atlantica
           T6c]
 gi|109700811|gb|ABG40731.1| transcription elongation factor GreA [Pseudoalteromonas atlantica
           T6c]
          Length = 158

 Score =  148 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T+KG + +++EL+  +  +RP IIK+I+EAR +GDL ENAEY AA+E Q+  EG
Sbjct: 1   MTQYPMTAKGAEMLREELQHLKSVKRPEIIKSIAEAREHGDLKENAEYHAAREQQSFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++  ++ID++ M+   ++ FG TV+++   S ++  Y+IVGD EAD+++ L+
Sbjct: 61  RIQDIEGKLSNVQIIDVTKMTNTGKVIFGTTVTILNLQSDEEITYKIVGDDEADIKNNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR LIGK+L D++++  P G   +EI++V ++
Sbjct: 121 SVSSPIARGLIGKQLDDVVTIQTPKGAIEFEIIEVEYV 158


>gi|301061737|ref|ZP_07202478.1| transcription elongation factor GreA [delta proteobacterium NaphS2]
 gi|300444197|gb|EFK08221.1| transcription elongation factor GreA [delta proteobacterium NaphS2]
          Length = 155

 Score =  148 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/155 (43%), Positives = 107/155 (69%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T  G +K++ EL + ++ E+P  I+AI+EARA+GDLSENAEY AAKE Q L   
Sbjct: 1   MEKMPITKDGLEKLKSELVYLEKTEKPNNIQAIAEARAHGDLSENAEYHAAKEKQGLIAA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++ EL+N I +AE+ID++    DR+ FG TV L +  +  +  YQ+VG  E+D ++G +S
Sbjct: 61  KINELQNAIGQAEIIDVNDGPMDRVVFGRTVLLYDIQNDKEITYQLVGPYESDPENGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           I SP+ R LIG+E+GD + +  P G   +E+L++ 
Sbjct: 121 IKSPLGRGLIGREIGDEVKIKTPRGVLEFEVLEIK 155


>gi|34499256|ref|NP_903471.1| transcription elongation factor [Chromobacterium violaceum ATCC
           12472]
 gi|34105107|gb|AAQ61463.1| transcription elongation factor [Chromobacterium violaceum ATCC
           12472]
          Length = 158

 Score =  148 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/158 (49%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T +G + +++EL+  +  ERP +I+AI+EAR++GDLSENAEY AAKE Q   EG
Sbjct: 1   MIKVPLTVRGAELLKEELQRLKSVERPSVIEAIAEARSHGDLSENAEYDAAKERQAFVEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE  ++ A +I+ +   +  R+ FGATV L++  + +   YQIVGD EAD++   V
Sbjct: 61  RIAELEGKLSNAVIINPAELDADGRVVFGATVDLMDLETEESVTYQIVGDDEADIKVCKV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPI+RALIGKE GD+  V APGG + YE+L V +I
Sbjct: 121 SVNSPISRALIGKEAGDVAEVVAPGGIREYEVLDVKYI 158


>gi|315038835|ref|YP_004032403.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
           1112]
 gi|325957274|ref|YP_004292686.1| transcription elongation factor GreA [Lactobacillus acidophilus
           30SC]
 gi|312276968|gb|ADQ59608.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
           1112]
 gi|325333839|gb|ADZ07747.1| transcription elongation factor GreA [Lactobacillus acidophilus
           30SC]
 gi|327184004|gb|AEA32451.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
           1118]
          Length = 158

 Score =  148 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 105/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T++G +K+Q EL+  +  +RP +I+ I  AR++GDLSEN+EY AAK+ Q+  
Sbjct: 1   MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIQRIKVARSFGDLSENSEYDAAKDEQSHV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E+++  A+V+D  ++  + ++ G TV+  E  + D + Y IVG  E+D  +G 
Sbjct: 61  EDRIAQVEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK+ G+ +S+  PGG+    I +V 
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGQFDVVINKVE 157


>gi|319763187|ref|YP_004127124.1| transcription elongation factor grea [Alicycliphilus denitrificans
           BC]
 gi|330825250|ref|YP_004388553.1| transcription elongation factor GreA [Alicycliphilus denitrificans
           K601]
 gi|317117748|gb|ADV00237.1| transcription elongation factor GreA [Alicycliphilus denitrificans
           BC]
 gi|329310622|gb|AEB85037.1| transcription elongation factor GreA [Alicycliphilus denitrificans
           K601]
          Length = 158

 Score =  148 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G ++++QEL   +  ERP +I AI+EARA GDLSENAEY+AAK+ Q   EG
Sbjct: 1   MATIPITKRGAEQLKQELHRLKTVERPAVINAIAEARAQGDLSENAEYEAAKDRQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A++ID S   +G R+ FGATV L +++SG+   YQIVG+ EAD++ GL+
Sbjct: 61  RILEIEGKLSAAQIIDPSELDAGGRVVFGATVELEDEDSGEAVRYQIVGEDEADLKHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ++SSPIARALIGKE GD   V APGG + YE++ V ++
Sbjct: 121 NVSSPIARALIGKEEGDTAEVQAPGGVRRYEVVSVSYV 158


>gi|108763574|ref|YP_631602.1| transcription elongation factor GreA [Myxococcus xanthus DK 1622]
 gi|108467454|gb|ABF92639.1| transcription elongation factor GreA [Myxococcus xanthus DK 1622]
          Length = 172

 Score =  148 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/156 (45%), Positives = 108/156 (69%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            D IP+T  G  K+++EL+  Q  ER +I + I  ARA+GDL ENAEY AAKE Q+  EG
Sbjct: 5   SDNIPMTPSGLRKLKEELKHLQSVERGKISREIEVARAHGDLRENAEYHAAKEKQSHIEG 64

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L + I RAEVID   + GD++ FGATV L++  +    +Y++VG+ EAD++   ++
Sbjct: 65  RILTLNDWIARAEVIDPKKLGGDKVIFGATVDLLDTETDKPVSYRLVGEIEADLKKRWIA 124

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ++SP+ARALIGK++GDI +V +PGG +  E+ ++ +
Sbjct: 125 VTSPVARALIGKKVGDIATVQSPGGVRELEVQEIRF 160


>gi|317050953|ref|YP_004112069.1| transcription elongation factor GreA [Desulfurispirillum indicum
           S5]
 gi|316946037|gb|ADU65513.1| transcription elongation factor GreA [Desulfurispirillum indicum
           S5]
          Length = 156

 Score =  148 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/154 (47%), Positives = 113/154 (73%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +D+IP+T  G + +++EL   ++ ER ++ + I+ ARA+GDL ENAEY AA+E Q+  EG
Sbjct: 1   MDRIPMTKTGLENLRKELEHLKKNERHQVKEEIAVARAHGDLKENAEYHAAREKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AELE+ + RAEVID ST++ D++ FG+ V+L+   +  +  Y +VGD EAD +S L++
Sbjct: 61  RIAELEDKVLRAEVIDPSTLASDKVLFGSQVTLLNLETDSEVVYTVVGDDEADYKSNLIA 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +SSP+A++LIGK +GD + VNAP G   YEIL++
Sbjct: 121 VSSPLAQSLIGKRVGDEVVVNAPKGAVEYEILKI 154


>gi|332534013|ref|ZP_08409864.1| transcription elongation factor GreA [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036562|gb|EGI73029.1| transcription elongation factor GreA [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 158

 Score =  148 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G D +++EL   +   RP+II  I+ AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQSIPMTVRGADLLRKELNELKTVTRPKIIADIAVAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++  ++ID++ M    ++ FG TV++V  ++  +  Y+IVGD EAD+++ L+
Sbjct: 61  RIQEIEAKLSNVQIIDVTKMPNTGKVIFGTTVTIVNVDTDAEVKYRIVGDDEADIKNNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK++ D +S+  P G   YEI++V ++
Sbjct: 121 SVNSPIARGLIGKQVDDAVSIQTPKGIVEYEIIEVEYL 158


>gi|302382095|ref|YP_003817918.1| transcription elongation factor GreA [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192723|gb|ADL00295.1| transcription elongation factor GreA [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 152

 Score =  148 bits (372), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 83/151 (54%), Positives = 117/151 (77%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T++G+  +  +L+  +  ERP +I AISEAR +GDLSENAEY AAKE Q   EG +AE+
Sbjct: 1   MTAEGYRSLDDQLKQLKSVERPSVIAAISEAREHGDLSENAEYHAAKERQGWIEGSIAEI 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E+ I+RA+VID+S +SGD++ FGATV++V++++ ++  YQIVG+ EADV+ G +SISSPI
Sbjct: 61  EDKISRAQVIDVSKLSGDQVKFGATVTVVDEDTEEEGRYQIVGEHEADVKKGKISISSPI 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARA+I K +GD + VN PGG K YEIL+V W
Sbjct: 121 ARAMISKAVGDTVEVNTPGGVKAYEILKVEW 151


>gi|307824612|ref|ZP_07654836.1| GreA/GreB family elongation factor [Methylobacter tundripaludum
           SV96]
 gi|307734266|gb|EFO05119.1| GreA/GreB family elongation factor [Methylobacter tundripaludum
           SV96]
          Length = 158

 Score =  148 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T KG +K++ EL   +   RPRI+ +I+ ARA+GDL ENAEY AAKE Q+  EG
Sbjct: 1   MNKVPLTVKGAEKLRAELEELKSVVRPRIVASIATARAHGDLKENAEYHAAKEQQSFAEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R++E+E  ++ A++IDI+   +  ++ FGATV + +  S  K  YQIVG+ EA+++ G +
Sbjct: 61  RISEIEGKLSNAQIIDITKVDANGKVVFGATVEIEDIESERKVTYQIVGEDEANIKEGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI SPIARALIGKE+ D+++V APGG   YEI+ + +I
Sbjct: 121 SIGSPIARALIGKEVEDVVTVKAPGGNVDYEIISIEYI 158


>gi|259907033|ref|YP_002647389.1| Transcription elongation factor GreA [Erwinia pyrifoliae Ep1/96]
 gi|224962655|emb|CAX54110.1| Transcription elongation factor GreA [Erwinia pyrifoliae Ep1/96]
 gi|283476829|emb|CAY72667.1| Transcription elongation factor greA [Erwinia pyrifoliae DSM 12163]
 gi|310766245|gb|ADP11195.1| Transcription elongation factor GreA [Erwinia sp. Ejp617]
          Length = 160

 Score =  148 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 68/160 (42%), Positives = 113/160 (70%), Gaps = 3/160 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T +G DK+++EL   +  +RPRII +I++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTLRGADKLREELEELKTVKRPRIIASIADAREHGDLKENAEYHAAREEQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTM---SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           R+ E+E  ++ A+VID++ M   +  R+ FGATV+++   + ++  Y+IVGD EAD +  
Sbjct: 61  RIQEIEAKLSNAQVIDVTKMAGNANGRVIFGATVTVLNVETDEESTYRIVGDDEADFKQN 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           L+S++SP+AR L+GK   D+  +  PGG+  Y+I++V ++
Sbjct: 121 LISVNSPMARGLVGKVADDVTVIKTPGGDVEYDIIKVEYL 160


>gi|217033071|ref|ZP_03438538.1| hypothetical protein HPB128_148g11 [Helicobacter pylori B128]
 gi|298736570|ref|YP_003729096.1| transcription elongation factor GreA [Helicobacter pylori B8]
 gi|216945215|gb|EEC23900.1| hypothetical protein HPB128_148g11 [Helicobacter pylori B128]
 gi|298355760|emb|CBI66632.1| transcription elongation factor GreA [Helicobacter pylori B8]
          Length = 164

 Score =  148 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/156 (41%), Positives = 103/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L  I+  A+VID S ++ ++++FG+T+ ++  ++  + +Y IVG  E+    GL+S
Sbjct: 61  RIVDLSEIVANAQVIDPSVLAHNKVSFGSTIKILNLDNDKEFSYTIVGSVESAPAKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIA++LIGK  GD +S+  P GE  +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDTVSIQLPNGESDFEILDIYY 156


>gi|254450273|ref|ZP_05063710.1| transcription elongation factor GreA [Octadecabacter antarcticus
           238]
 gi|198264679|gb|EDY88949.1| transcription elongation factor GreA [Octadecabacter antarcticus
           238]
          Length = 156

 Score =  148 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 82/156 (52%), Positives = 116/156 (74%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DKIP+T  GF+K+  EL+  +  ERP II+AIS+AR +GDLSENAEY +AKE Q+  EG
Sbjct: 1   MDKIPLTRAGFNKLDAELKNLKSVERPAIIRAISDAREHGDLSENAEYHSAKEKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE  I+ A+VID+S +SG    FGA V+L+++ +  +  YQIVG+ EAD++ G ++
Sbjct: 61  RVKELEGAISLADVIDVSKLSGTV-KFGAHVTLIDEATDKETTYQIVGEYEADIEQGRLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SPIARALIGK+ GD + V  PGG K+YEIL +++
Sbjct: 120 MKSPIARALIGKDEGDSVEVRTPGGVKSYEILTIVF 155


>gi|120611280|ref|YP_970958.1| transcription elongation factor GreA [Acidovorax citrulli AAC00-1]
 gi|120589744|gb|ABM33184.1| transcription elongation factor GreA [Acidovorax citrulli AAC00-1]
          Length = 158

 Score =  148 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 82/157 (52%), Positives = 114/157 (72%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL   +  ERP +I AI+EARA GDLSENAEY+AAK+ Q   EG
Sbjct: 1   MATIPITKRGAEKLKEELHRLKTVERPAVINAIAEARAQGDLSENAEYEAAKDRQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID +   +G R+ FGATV L ++ SGD   YQIVG+ EAD++ GL+
Sbjct: 61  RIQEVEGKLSAAQVIDPAQLDAGGRVVFGATVDLEDEESGDLVTYQIVGEDEADLKQGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ++SSPIARALIGKE GD   V APGG + YE++ V +
Sbjct: 121 NVSSPIARALIGKEEGDTAEVQAPGGLRRYEVVAVRY 157


>gi|260220957|emb|CBA29042.1| Transcription elongation factor greA [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 163

 Score =  148 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +   P+T +G + ++ EL   +  ERP +I+AI+EARA GDLSENA+Y AAKE Q   EG
Sbjct: 6   MATYPITKRGAEMLKAELHKLKTVERPSVIQAIAEARAQGDLSENADYDAAKERQGFIEG 65

Query: 62  RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID ST+    R+ FGATV L +++SG +  YQIVG+ EAD++ GL+
Sbjct: 66  RIQEVEGKLSAAQVIDPSTIQADGRVVFGATVELEDEDSGQQVKYQIVGEDEADLKQGLI 125

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +ISSPIARALIGKE+GD   V APGGE+ YE++ V +I
Sbjct: 126 NISSPIARALIGKEVGDTAVVQAPGGERAYEVVAVHYI 163


>gi|304387186|ref|ZP_07369429.1| transcription elongation factor GreA [Neisseria meningitidis ATCC
           13091]
 gi|304338753|gb|EFM04864.1| transcription elongation factor GreA [Neisseria meningitidis ATCC
           13091]
 gi|325132389|gb|EGC55082.1| transcription elongation factor greA [Neisseria meningitidis M6190]
 gi|325136526|gb|EGC59130.1| transcription elongation factor greA [Neisseria meningitidis M0579]
          Length = 173

 Score =  148 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++QEL+  +   RP +I+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 16  MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 75

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R++ELE+ ++ A +I+ + +  + +I FG TV+L +  + +   YQIVG+ EAD++ G +
Sbjct: 76  RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 135

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + SPIARALIGKE GD   V APGG + Y+I++V +I
Sbjct: 136 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 173


>gi|158422770|ref|YP_001524062.1| transcription elongation factor GreA [Azorhizobium caulinodans ORS
           571]
 gi|189042232|sp|A8HR94|GREA_AZOC5 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|158329659|dbj|BAF87144.1| transcription elongation factor [Azorhizobium caulinodans ORS 571]
          Length = 157

 Score =  148 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 96/156 (61%), Positives = 131/156 (83%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  GF  +++ELR+RQQ ERPRII AISEARA+GDLSENAEY AAKELQ+LNEG
Sbjct: 1   MEKIPMTGAGFVALEEELRFRQQVERPRIISAISEARAHGDLSENAEYHAAKELQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AELE+ I+RAEVID+S +SGD + FGATV+LV++++ +++ +QIVGD EAD ++G +S
Sbjct: 61  RIAELEDKISRAEVIDVSKLSGDIVKFGATVTLVDEDTEEERVWQIVGDSEADAKAGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ISSP+ARALIGK+ G  + V  P G +++EI++V W
Sbjct: 121 ISSPVARALIGKKKGSSVEVVTPKGARSFEIVEVRW 156


>gi|146308634|ref|YP_001189099.1| transcription elongation factor GreA [Pseudomonas mendocina ymp]
 gi|330504838|ref|YP_004381707.1| transcription elongation factor GreA [Pseudomonas mendocina NK-01]
 gi|145576835|gb|ABP86367.1| transcription elongation factor GreA [Pseudomonas mendocina ymp]
 gi|328919124|gb|AEB59955.1| transcription elongation factor GreA [Pseudomonas mendocina NK-01]
          Length = 158

 Score =  148 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 101/158 (63%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T +G   +++EL    +  RP + +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MNKYPMTVQGARALEEELAHLTKVRRPALSQAIAEARELGDLKENAEYHAAREEQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A +ID++++    ++ FG TV +    + +   YQIVG+ EAD++ G +
Sbjct: 61  RVRDIEGRLQNAVIIDVTSIEHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKQGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIARAL+GK  GD++ V  P G   YEI++V  I
Sbjct: 121 SVGSPIARALVGKSEGDVVGVQTPSGLVEYEIVEVRHI 158


>gi|225010165|ref|ZP_03700637.1| transcription elongation factor GreA [Flavobacteria bacterium
           MS024-3C]
 gi|225005644|gb|EEG43594.1| transcription elongation factor GreA [Flavobacteria bacterium
           MS024-3C]
          Length = 158

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 98/156 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T++G  K++ EL   +  ERP+  +AI+EAR  GDLSENAEY AAKE Q L E
Sbjct: 1   MSKVSYYTAEGLKKLKDELNQLRDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A++E I+  A +ID S +   ++   +TV L    +G + +Y +V + EAD++SG +
Sbjct: 61  LKIAKMEGILAGARLIDESQLDNSKVLVLSTVKLKNTQNGMQMSYTLVAESEADLKSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S++SPI + L+GK++GDI  +  P G   +EI+ + 
Sbjct: 121 SVNSPIGQGLLGKKVGDIAEIKVPNGTMGFEIVAIT 156


>gi|126740555|ref|ZP_01756242.1| transcription elongation factor GreA [Roseobacter sp. SK209-2-6]
 gi|126718356|gb|EBA15071.1| transcription elongation factor GreA [Roseobacter sp. SK209-2-6]
          Length = 156

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 80/156 (51%), Positives = 120/156 (76%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  G   ++ EL+  +  ERP II+AI+EAR  GDLSENAEY +A+E Q+  EG
Sbjct: 1   MEKIPMTPAGHTAMESELKNLKSVERPSIIQAIAEARELGDLSENAEYHSAREKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE II  A+VID + +SG  I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61  RIKELEGIIGLADVIDPAKLSGS-IKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SPIARALIGK+ GD + V  PGGE++YEIL++++
Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGERSYEILKIVY 155


>gi|264679349|ref|YP_003279256.1| Kelongation factor GreA [Comamonas testosteroni CNB-2]
 gi|299532308|ref|ZP_07045701.1| Kelongation factor GreA [Comamonas testosteroni S44]
 gi|262209862|gb|ACY33960.1| Kelongation factor GreA [Comamonas testosteroni CNB-2]
 gi|298719716|gb|EFI60680.1| Kelongation factor GreA [Comamonas testosteroni S44]
          Length = 158

 Score =  147 bits (371), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 117/158 (74%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K++ EL+  +  +RP +I+AI+EARA GDLSENAEY++AKE Q   EG
Sbjct: 1   MATIPITKRGAEKLKVELQRLKTVDRPAVIQAIAEARAQGDLSENAEYESAKEQQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID +   +G R+ FGATV L +++SG    YQIVG+ EAD++ GL+
Sbjct: 61  RILEVEGKLSAAQVIDPTELDAGGRVVFGATVDLEDEDSGSPVTYQIVGEDEADLKHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ++SSPIARALIGKE GD   V APGGE+ YEI+ V ++
Sbjct: 121 NVSSPIARALIGKEEGDTAVVQAPGGERRYEIVGVKYV 158


>gi|303256868|ref|ZP_07342882.1| transcription elongation factor GreA [Burkholderiales bacterium
           1_1_47]
 gi|330998883|ref|ZP_08322610.1| transcription elongation factor GreA [Parasutterella
           excrementihominis YIT 11859]
 gi|302860359|gb|EFL83436.1| transcription elongation factor GreA [Burkholderiales bacterium
           1_1_47]
 gi|329576097|gb|EGG57616.1| transcription elongation factor GreA [Parasutterella
           excrementihominis YIT 11859]
          Length = 157

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 72/155 (46%), Positives = 109/155 (70%), Gaps = 1/155 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           IP+T++G   ++ EL+  + ++RP +++AI+EAR  GDLSENAEY AA+E Q   EGR+ 
Sbjct: 3   IPITARGAKMLKDELQRLKTQDRPAVVQAIAEAREKGDLSENAEYDAARESQAFIEGRIL 62

Query: 65  ELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           ELE+ I + +VID ST     ++ F ATV++ +  +G+++  QIVG+ E+D + G +S++
Sbjct: 63  ELESKIAQFQVIDPSTLPDNGKVVFSATVTIEDVETGNRQTVQIVGNDESDTKLGRISVA 122

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+ARALIGK  GD + V APGG   YEI+ V +I
Sbjct: 123 SPMARALIGKSEGDEVEVQAPGGLSEYEIISVQYI 157


>gi|262197389|ref|YP_003268598.1| transcription elongation factor GreA [Haliangium ochraceum DSM
           14365]
 gi|262080736|gb|ACY16705.1| transcription elongation factor GreA [Haliangium ochraceum DSM
           14365]
          Length = 169

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 108/158 (68%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M DK P+T  G   ++ +L+  ++ +RP   KAI  AR +GDLSENA+Y AAKE Q + E
Sbjct: 1   MADKFPMTPSGHAWMKAQLKKLKEVDRPANAKAIEVARGHGDLSENADYDAAKEEQGMIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ E E  +  +EVID + +SG+R+ FGATV++ + ++GD+  Y IVG+ EAD+++  +
Sbjct: 61  ARIREYEAKLALSEVIDPTKLSGERVKFGATVTVEDIDTGDEATYTIVGEHEADIKNKRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+++P+ARALIGK +GD   V  P G + +EI+ V W+
Sbjct: 121 SVTAPVARALIGKAIGDETQVQTPKGTRAFEIVDVKWL 158


>gi|161870299|ref|YP_001599469.1| transcription elongation factor GreA [Neisseria meningitidis
           053442]
 gi|161595852|gb|ABX73512.1| transcription elongation factor [Neisseria meningitidis 053442]
          Length = 173

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++QEL+  +   RP +I+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 16  MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 75

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R++ELE+ ++ A +I+ + +  + +I FG TV+L +  + +   YQIVG+ EAD++ G +
Sbjct: 76  RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 135

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + SPIARALIGKE GD   V APGG + Y+I++V +I
Sbjct: 136 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 173


>gi|77462321|ref|YP_351825.1| transcription elongation factor GreA [Rhodobacter sphaeroides
           2.4.1]
 gi|126461197|ref|YP_001042311.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC
           17029]
 gi|221638177|ref|YP_002524439.1| transcription elongation factor GreA [Rhodobacter sphaeroides
           KD131]
 gi|332560203|ref|ZP_08414525.1| transcription elongation factor GreA [Rhodobacter sphaeroides WS8N]
 gi|123592895|sp|Q3J5L0|GREA_RHOS4 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|166200690|sp|A3PGS3|GREA_RHOS1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799566|sp|B9KLF5|GREA_RHOSK RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|77386739|gb|ABA77924.1| transcription elongation factor GreA [Rhodobacter sphaeroides
           2.4.1]
 gi|126102861|gb|ABN75539.1| transcription elongation factor GreA [Rhodobacter sphaeroides ATCC
           17029]
 gi|221158958|gb|ACL99937.1| Transcription elongation factor greA [Rhodobacter sphaeroides
           KD131]
 gi|332277915|gb|EGJ23230.1| transcription elongation factor GreA [Rhodobacter sphaeroides WS8N]
          Length = 156

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 81/157 (51%), Positives = 120/157 (76%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DKIP+T  GF  +  EL+  +  ERP +I++I+EAR +GDLSENAEY AA+E Q+  EG
Sbjct: 1   MDKIPMTRAGFTALDDELKTLKTVERPAVIRSIAEAREHGDLSENAEYHAAREKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I++ AEVID + +SG  I FGATV+++++ + +++ YQIVG+ EAD+++GL++
Sbjct: 61  RIKELEAILSLAEVIDPAKLSGS-IKFGATVTILDEETEEERTYQIVGEAEADIEAGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARALIGK+ GD I V  PGGE+ YE++ V ++
Sbjct: 120 IKSPLARALIGKDEGDSIEVKTPGGERGYEVVSVRFV 156


>gi|269103415|ref|ZP_06156112.1| transcription elongation factor GreA [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163313|gb|EEZ41809.1| transcription elongation factor GreA [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 157

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 109/158 (68%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK+P+T +G  K++QEL    +  RP I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MDKVPMTVRGEQKLRQELEVLMK-RRPLISQAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M    ++ FG TV+L+  ++ ++  Y+IVGD EAD +  L+
Sbjct: 60  QIRDIEYKLSVAQVIDVTKMPNSGKVIFGTTVTLLNLDTDEETTYRIVGDDEADFKQNLI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK  GD + +  PGG K +EI++V +I
Sbjct: 120 SVNSPIARGLIGKMEGDEVQIATPGGTKEFEIVEVQYI 157


>gi|307546737|ref|YP_003899216.1| transcription elongation factor GreA [Halomonas elongata DSM 2581]
 gi|307218761|emb|CBV44031.1| transcription elongation factor GreA [Halomonas elongata DSM 2581]
          Length = 158

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 108/158 (68%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T  G  +++ EL   + E RP +I AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNKVPMTVVGEQRLRDELEHLKSEARPNVIAAIAEAREHGDLKENAEYHAAREQQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++      ++ FG TV L+  ++ ++  Y+IVG+ EAD++ GL+
Sbjct: 61  RIQEIEGKLSNAQVIDVTKLPKTGKVIFGVTVGLINLDNDEEVTYRIVGEDEADIKVGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIGKE G+ + V  PGG+  YEI  V  +
Sbjct: 121 SVTSPIARALIGKEEGETVLVRTPGGDVEYEISSVEHL 158


>gi|149913254|ref|ZP_01901788.1| transcription elongation factor GreA [Roseobacter sp. AzwK-3b]
 gi|149813660|gb|EDM73486.1| transcription elongation factor GreA [Roseobacter sp. AzwK-3b]
          Length = 156

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 86/157 (54%), Positives = 125/157 (79%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T +G   ++ EL+  + EERP II+AISEAR +GDLSENAEY +AKE Q+  EG
Sbjct: 1   MEKIPMTRRGHTALEVELKQLKSEERPAIIRAISEAREHGDLSENAEYHSAKEKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +I+RAEVID + + G  I FGATV+LV++++ ++K +QIVG+ EA++++GL++
Sbjct: 61  RIKELEGVISRAEVIDPTKLKGP-IKFGATVTLVDEDTDEEKTWQIVGEYEANIENGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + SPIARALIGKE GD + V  PGGEK+YE+L++ +I
Sbjct: 120 MKSPIARALIGKEAGDSVEVRTPGGEKSYEVLKIEYI 156


>gi|221066104|ref|ZP_03542209.1| transcription elongation factor GreA [Comamonas testosteroni KF-1]
 gi|220711127|gb|EED66495.1| transcription elongation factor GreA [Comamonas testosteroni KF-1]
          Length = 158

 Score =  147 bits (371), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 117/158 (74%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K++ EL+  +  +RP +I+AI+EARA GDLSENAEY++AKE Q   EG
Sbjct: 1   MATIPITKRGAEKLKVELQRLKTVDRPAVIQAIAEARAQGDLSENAEYESAKEQQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID +   +G R+ FGATV L +++SG    YQIVG+ EAD++ GL+
Sbjct: 61  RIIEVEGKLSAAQVIDPTELDAGGRVVFGATVDLEDEDSGSAVTYQIVGEDEADLKHGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ++SSPIARALIGKE GD   V APGGE+ YEI+ V +I
Sbjct: 121 NVSSPIARALIGKEEGDTAVVQAPGGERRYEIVGVKYI 158


>gi|221134941|ref|ZP_03561244.1| transcription elongation factor GreA [Glaciecola sp. HTCC2999]
          Length = 158

 Score =  147 bits (370), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T+ G + ++ EL+  +  +RP II AI+EAR +GDL ENAEY AA+E Q+  EG
Sbjct: 1   MTQYPMTAHGAEMLRAELQELKSVKRPEIITAIAEAREHGDLKENAEYHAAREQQSFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++ID++ M    +I FG TV+L+   + D+  Y+IVGD EAD+++ L+
Sbjct: 61  RIQDIEGKLSNAQIIDVTKMENTGKIIFGTTVTLINCETDDEITYKIVGDDEADIKNNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK + D+ ++  P G   +E+++V +I
Sbjct: 121 SVNSPIARGLIGKMVDDVANIQTPKGVVEFEVIEVQYI 158


>gi|86149591|ref|ZP_01067821.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|283955709|ref|ZP_06373200.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
           1336]
 gi|85839859|gb|EAQ57118.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|283792664|gb|EFC31442.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 161

 Score =  147 bits (370), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 103/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P++  G+DK+  EL+  +  +RP ++  I  AR++GDL ENAEY AA+E Q L E 
Sbjct: 1   MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AEL +++ RA+VID S+   D + FG++V +++ ++  +  Y +VG  E D+  G +S
Sbjct: 61  RIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGDLDKGYIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SPIA+A++GK+ GD   V  P GE  +EIL + +
Sbjct: 121 IASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156


>gi|262371951|ref|ZP_06065230.1| transcription elongation factor GreB [Acinetobacter junii SH205]
 gi|262311976|gb|EEY93061.1| transcription elongation factor GreB [Acinetobacter junii SH205]
          Length = 158

 Score =  147 bits (370), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 102/158 (64%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +++EL+  +  +RPRI +AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQRYPMTPEGKVALEKELQQLKTVDRPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +   +VID+       R+ FG TV++   ++ ++K Y+IVGD EAD +   +
Sbjct: 61  RIQDIEGKLGACQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GK  GD   +  P GE  YEI+ V ++
Sbjct: 121 SVNSPIARGLLGKSEGDEAKIQTPQGEVEYEIVSVEYL 158


>gi|192360133|ref|YP_001983144.1| transcription elongation factor [Cellvibrio japonicus Ueda107]
 gi|190686298|gb|ACE83976.1| transcription elongation factor [Cellvibrio japonicus Ueda107]
          Length = 159

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 73/159 (45%), Positives = 113/159 (71%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K P+T  G +K++ EL   ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q+  E
Sbjct: 1   MSTKFPMTITGAEKLRLELEDLKKVQRPRIVQAIAEAREHGDLKENAEYSAAREQQSFCE 60

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+ E+E  ++ A++ID++T+    ++ FG TV+++   +     YQIVGD EA+V++  
Sbjct: 61  GRIKEIEGKLSNAQIIDVTTIPHTGKVIFGTTVTIINIETEQALTYQIVGDDEAEVKANK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S++SPIARAL+GKE GD++ V APGG+  YEI +V  +
Sbjct: 121 ISVNSPIARALVGKEEGDVVIVRAPGGDVEYEIDKVEHL 159


>gi|325285915|ref|YP_004261705.1| transcription elongation factor GreA [Cellulophaga lytica DSM 7489]
 gi|324321369|gb|ADY28834.1| transcription elongation factor GreA [Cellulophaga lytica DSM 7489]
          Length = 158

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 98/156 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +    T++G  K++ EL   +  ERP+  +AI+EAR  GDLSENAEY AAKE Q L E
Sbjct: 1   MSNVSYYTAEGLKKLKDELNQLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++++LE I+  A +ID S +   ++   +TV L  +++G +  Y +V + EAD+++G +
Sbjct: 61  LKISKLEEIVAGARIIDESQLDTSKVLVLSTVKLKNQSNGMEMKYTLVAESEADLKTGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S++SPI + L+GK +GD   +  P G+    IL++ 
Sbjct: 121 SVNSPIGKGLLGKSVGDEAEIAVPNGKIKLTILEIT 156


>gi|239815600|ref|YP_002944510.1| transcription elongation factor GreA [Variovorax paradoxus S110]
 gi|239802177|gb|ACS19244.1| transcription elongation factor GreA [Variovorax paradoxus S110]
          Length = 158

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K++ EL   +  +RP +I AISEARA GDLSENAEY+ AK+ Q   EG
Sbjct: 1   MATIPITKRGAEKLRAELHQLKTVDRPWVINAISEARAQGDLSENAEYEVAKDRQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A++ID +   +G ++ FG+TV L E+ SG+   YQIVG+ EAD++ GL+
Sbjct: 61  RIQEVEGKLSAAQIIDPAELDAGGKVVFGSTVELEEEESGEAVKYQIVGEDEADLKLGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +ISSPIARALIGKE GD   V APGG K YEI+ V +I
Sbjct: 121 NISSPIARALIGKEEGDTAEVQAPGGLKRYEIVAVRYI 158


>gi|86151410|ref|ZP_01069625.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86153776|ref|ZP_01071979.1| transcription elongation factor greA [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121612714|ref|YP_001000001.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167004957|ref|ZP_02270715.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|315123863|ref|YP_004065867.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|166200654|sp|A1VY10|GREA_CAMJJ RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|85841757|gb|EAQ59004.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85842737|gb|EAQ59949.1| transcription elongation factor greA [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87250181|gb|EAQ73139.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|315017585|gb|ADT65678.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 161

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 103/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P++  G+DK+  EL+  +  +RP ++  I  AR++GDL ENAEY AA+E Q L E 
Sbjct: 1   MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AEL +++ RA+VID S+   D + FG++V +++ ++  +  Y +VG  E D+  G +S
Sbjct: 61  RIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIIDLDTEKESKYTLVGICEGDLDKGYIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SPIA+A++GK+ GD   V  P GE  +EIL + +
Sbjct: 121 IASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156


>gi|227892809|ref|ZP_04010614.1| transcriptional elongation factor [Lactobacillus ultunensis DSM
           16047]
 gi|227865450|gb|EEJ72871.1| transcriptional elongation factor [Lactobacillus ultunensis DSM
           16047]
          Length = 159

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 105/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T++G +K+Q EL+  +  +RP +IK I  AR++GDLSEN+EY AAK+ Q+  
Sbjct: 1   MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIKRIKVARSFGDLSENSEYDAAKDEQSHV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E+++  A+V+D  ++  + ++ G TV+  E  + D + Y IVG  E+D  +G 
Sbjct: 61  EDRIAQVEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK+ G+ +S+  PGG+    I +V 
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGKFDVVINKVE 157


>gi|121998553|ref|YP_001003340.1| transcription elongation factor GreA [Halorhodospira halophila SL1]
 gi|166200666|sp|A1WXX6|GREA_HALHL RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|121589958|gb|ABM62538.1| transcription elongation factor GreA [Halorhodospira halophila SL1]
          Length = 158

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 79/157 (50%), Positives = 118/157 (75%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G +K+++EL   + E+RPR+I+AI+EAR +GDL ENAEY AA+E Q+  EG
Sbjct: 1   MSKIPLTIRGAEKLREELHRLKHEDRPRVIQAIAEAREHGDLKENAEYHAAREQQSFIEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A++ID  +  +  +I FGATV+L + ++ +   YQIVG+ EAD++  L+
Sbjct: 61  RIQEIEGKLSNAQIIDPAAVQAAPKIVFGATVALEDTDTEETVTYQIVGEDEADIKQHLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIARALIGKE GD   V APGGE+TYEI++V +
Sbjct: 121 SVNSPIARALIGKEEGDEAVVQAPGGERTYEIVEVRY 157


>gi|163745673|ref|ZP_02153033.1| transcription elongation factor GreA [Oceanibulbus indolifex
           HEL-45]
 gi|161382491|gb|EDQ06900.1| transcription elongation factor GreA [Oceanibulbus indolifex
           HEL-45]
          Length = 156

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 82/156 (52%), Positives = 120/156 (76%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  G   ++ EL+  +  ERP IIKAI+EAR +GDLSENAEY +AKE Q+  EG
Sbjct: 1   MEKIPMTRDGHTALEVELKHLKSVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +I+ A+VID   +S   I FGATV+LV++++ ++K YQIVG+ EA+++ GL++
Sbjct: 61  RIKELEGVISLADVIDPKKLS-GSIKFGATVTLVDEDTEEEKTYQIVGEYEANIEKGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SPIARALIGK+ GD + V  PGG+K+YE+L++++
Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGQKSYEVLKIVY 155


>gi|91788539|ref|YP_549491.1| GreA/GreB family elongation factor [Polaromonas sp. JS666]
 gi|91697764|gb|ABE44593.1| GreA/GreB family elongation factor [Polaromonas sp. JS666]
          Length = 158

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 80/158 (50%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  +P+T +G +K++ EL   +  +RP +I +ISEARA GDLSENAEY AAK+ Q   EG
Sbjct: 1   MATLPITKRGAEKLKAELHQLKTVDRPWVINSISEARAQGDLSENAEYDAAKDRQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A++ID S   +G R+ FG+T+ L ++ SGD   YQIVG+ EAD++ G V
Sbjct: 61  RIQEIEGKLSAAQIIDPSELDAGGRVVFGSTIELQDEESGDTVTYQIVGEDEADIKHGRV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +I SPIARALIGK+ GD   V APGG K YEI+ V++I
Sbjct: 121 NIGSPIARALIGKDEGDTAEVQAPGGVKRYEIVAVMYI 158


>gi|160871787|ref|ZP_02061919.1| transcription elongation factor GreA [Rickettsiella grylli]
 gi|159120586|gb|EDP45924.1| transcription elongation factor GreA [Rickettsiella grylli]
          Length = 158

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T  G   +++EL   +  +RP++I AI+EAR++GDL ENAEY AAKE+Q   EG
Sbjct: 1   MKKIPMTISGAQYLKKELHQLKTLKRPQVIAAIAEARSHGDLKENAEYHAAKEMQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+EN +  A++ID++ ++   ++ FG+T+ L+  ++ ++  YQIVG+ EAD++   +
Sbjct: 61  RITEIENKLASAQIIDVTKLNNLGKVIFGSTIHLMNTHTHEQVTYQIVGEDEADIKHSKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIGKE GD++ V  P G     I +V +I
Sbjct: 121 SVASPIARALIGKEEGDLVEVQTPSGLVNLAIDKVEYI 158


>gi|226951540|ref|ZP_03822004.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Acinetobacter sp. ATCC 27244]
 gi|294651182|ref|ZP_06728514.1| transcription elongation factor GreA [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226837732|gb|EEH70115.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Acinetobacter sp. ATCC 27244]
 gi|292822935|gb|EFF81806.1| transcription elongation factor GreA [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 158

 Score =  146 bits (369), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 102/158 (64%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +++EL+  +  +RPRI +AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQRYPMTPEGKVALEKELQQLKTVDRPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +   +VID+       R+ FG TV++   ++ ++K Y+IVGD EAD +   +
Sbjct: 61  RIQDIEGKLGACQVIDVKDLEKNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GK  GD   +  P GE  YEI+ V ++
Sbjct: 121 SVNSPIARGLLGKSEGDEAKIQTPQGEVEYEIVSVEYL 158


>gi|85858479|ref|YP_460681.1| transcription elongation factor [Syntrophus aciditrophicus SB]
 gi|123725222|sp|Q2LR03|GREA_SYNAS RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|85721570|gb|ABC76513.1| transcription elongation factor [Syntrophus aciditrophicus SB]
          Length = 161

 Score =  146 bits (369), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 108/157 (68%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T  GF+ +++EL   +    P  IK I  ARA+GDLSENAEY AAKE Q+   G
Sbjct: 1   MEKMPITKSGFENLKKELEHLKCVLIPANIKDIEIARAHGDLSENAEYTAAKEKQSFLHG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++ ELEN +  + VID+  +S DRI FGATV + E ++G + NYQ+VG  E+++    +S
Sbjct: 61  KLQELENNLALSNVIDLKMLSDDRIVFGATVIIEEASTGKQTNYQLVGPFESNISENKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ++SPI +ALIGK +GD + V+ PGG + +E++ + +I
Sbjct: 121 VTSPIGKALIGKSIGDEVKVHTPGGIRNFEVVDI-YI 156


>gi|307611501|emb|CBX01175.1| transcription elongation factor GreA [Legionella pneumophila 130b]
          Length = 155

 Score =  146 bits (369), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 74/153 (48%), Positives = 109/153 (71%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G + ++ EL   +  +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEGR+ EL
Sbjct: 1   MTVEGAEALKAELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEGRIQEL 60

Query: 67  ENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ A++IDIS   +  ++ FG+TV++    +G +  Y+IVG+ EAD++   +S SSP
Sbjct: 61  EAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKISYSSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IARALIGKEL D ++V  PGG   YEI+QV +I
Sbjct: 121 IARALIGKELDDAVTVETPGGMVEYEIIQVQYI 153


>gi|319793964|ref|YP_004155604.1| transcription elongation factor grea [Variovorax paradoxus EPS]
 gi|315596427|gb|ADU37493.1| transcription elongation factor GreA [Variovorax paradoxus EPS]
          Length = 158

 Score =  146 bits (369), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K++ EL   +  ERP +I AISEARA GDLSENAEY+ AK+ Q   EG
Sbjct: 1   MATIPITKRGAEKLRAELHQLKTVERPWVINAISEARAQGDLSENAEYEVAKDRQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A++ID S   +G ++ FG+TV L E+ SG+   YQIVG+ EAD++ GL+
Sbjct: 61  RIQEVEGKLSAAQIIDPSELDAGGKVVFGSTVELEEEESGEAVKYQIVGEDEADLKLGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +ISSPIARALIGKE GD   V APGG K YEI+ V ++
Sbjct: 121 NISSPIARALIGKEEGDTAEVQAPGGLKRYEIVAVRYL 158


>gi|254458168|ref|ZP_05071594.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD
           1]
 gi|207085004|gb|EDZ62290.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD
           1]
          Length = 165

 Score =  146 bits (369), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 106/157 (67%), Gaps = 1/157 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           +DK+ P+T  G++K+Q E+R  ++ +RP I+KAI EA  +GDL ENAEY AAKE Q   +
Sbjct: 1   MDKVEPMTLFGYEKLQAEVRDLKEVKRPEIVKAIEEALEHGDLKENAEYHAAKEAQRNID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+A+L +I+  + ++D S +   +I+FG+TV + + +S +   Y IVG  E++   GL+
Sbjct: 61  NRLADLASILGCSRIVDPSELEHAKISFGSTVVMTDMDSDETVTYTIVGGCESNPDMGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S +SP+A+ L+G+E GD + V  PGG K YEI +V +
Sbjct: 121 SFASPLAKQLLGREEGDEVKVVLPGGAKEYEIEEVKY 157


>gi|86139026|ref|ZP_01057597.1| transcription elongation factor GreA [Roseobacter sp. MED193]
 gi|85824257|gb|EAQ44461.1| transcription elongation factor GreA [Roseobacter sp. MED193]
          Length = 156

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 83/156 (53%), Positives = 118/156 (75%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+TS G   ++ EL+  +  ERP IIKAI+EAR  GDLSENAEY +A+E Q+  EG
Sbjct: 1   MEKIPMTSAGHTALEAELKNLKSVERPTIIKAIAEARELGDLSENAEYHSAREKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I++ A+VID + +SG  I FGA V+LV++++ ++K +QIVG+ EA+V++GL++
Sbjct: 61  RIKELEGILSLADVIDPAKLSGS-IKFGAKVTLVDEDTDEEKTWQIVGEHEANVEAGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SPIARALIGKE GD + V  PGG + YEIL + +
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGVRGYEILTIHY 155


>gi|315932570|gb|EFV11502.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 161

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 103/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P++  G+DK+  EL+  +  +RP ++  I  AR++GDL ENAEY AA+E Q L E 
Sbjct: 1   MQKEPMSQFGYDKLAAELKDLKDNQRPTVVIEIDTARSHGDLKENAEYHAAREKQALIES 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AEL +++ RA+VID S+   D + FG++V +++ ++  +  Y +VG  E D+  G +S
Sbjct: 61  RIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGDLDKGYIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SPIA+A++GK+ GD   V  P GE  +EIL + +
Sbjct: 121 IASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156


>gi|260103131|ref|ZP_05753368.1| transcription elongation factor GreA [Lactobacillus helveticus DSM
           20075]
 gi|260083041|gb|EEW67161.1| transcription elongation factor GreA [Lactobacillus helveticus DSM
           20075]
 gi|328464780|gb|EGF36095.1| transcription elongation factor GreA [Lactobacillus helveticus MTCC
           5463]
          Length = 158

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 104/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T++G +K+Q EL+  +  +RP +I+ I  AR++GDLSEN+EY AAK+ Q+  
Sbjct: 1   MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E+++  A+V+D  ++  + ++ G TV+  E  + D + Y IVG  E+D  +G 
Sbjct: 61  EDRIAQIEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDAETYTIVGSDESDPLNGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK+ G+ +S+  PGG+    I  V 
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGQFDVVINNVE 157


>gi|121604678|ref|YP_982007.1| transcription elongation factor GreA [Polaromonas naphthalenivorans
           CJ2]
 gi|229485903|sp|A1VN58|GREA_POLNA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|120593647|gb|ABM37086.1| transcription elongation factor GreA [Polaromonas naphthalenivorans
           CJ2]
          Length = 158

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  +P+T +G +K++ EL   +  +RP +I AISEARA GDLSENAEY+ AK+ Q   EG
Sbjct: 1   MATLPITKRGAEKLKAELHNLKTVQRPWVINAISEARAQGDLSENAEYEVAKDRQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID +T     R+ FG+TV L ++ +GD   YQIVG+ EAD++ GLV
Sbjct: 61  RIQEIEGKLSAAQVIDPTTFETGTRVVFGSTVKLEDEATGDSVTYQIVGEDEADIKLGLV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +I SPIARALIGK+ GD   V APGG + YEI+ VL+I
Sbjct: 121 NIGSPIARALIGKDEGDSAEVQAPGGIRRYEIVTVLYI 158


>gi|157962891|ref|YP_001502925.1| transcription elongation factor GreA [Shewanella pealeana ATCC
           700345]
 gi|157847891|gb|ABV88390.1| transcription elongation factor GreA [Shewanella pealeana ATCC
           700345]
          Length = 158

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  +P+T  G  ++++EL   + E RP+I +AI EAR  GDL ENAEY AA+E Q L E 
Sbjct: 1   MSTVPMTIVGAAQLRKELDHLKFERRPKIAEAIGEARELGDLKENAEYHAAREEQGLCEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++ID++TM+ + R+ FG+TV++V  ++ ++  Y+IVG+ EA+++  L+
Sbjct: 61  RVRDIEGKLSHAQIIDVTTMANNGRVIFGSTVTIVNVDTDEEVTYRIVGEDEANIRENLL 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR LIGK L D IS+  PGG   +EI++V +I
Sbjct: 121 SVSSPIARGLIGKSLDDEISIVTPGGTNDFEIIKVEYI 158


>gi|312884007|ref|ZP_07743724.1| transcription elongation factor GreA [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368465|gb|EFP96000.1| transcription elongation factor GreA [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 157

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 115/158 (72%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G  K++ EL    +  RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTLRGELKLRDELDRLLK-LRPKISEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M    ++ FGATV+L++ ++ D+K YQIVGD EAD++SGL+
Sbjct: 60  QIRDIEYKLSVAQVIDVTKMDNTGKVIFGATVTLIDCDTEDEKTYQIVGDDEADIKSGLI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR LIGK  GD + ++ PGG++ +EI  V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGDRDFEIDSVQYI 157


>gi|93005658|ref|YP_580095.1| GreA/GreB family elongation factor [Psychrobacter cryohalolentis
           K5]
 gi|123264676|sp|Q1QCJ2|GREA_PSYCK RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|92393336|gb|ABE74611.1| GreA/GreB family elongation factor [Psychrobacter cryohalolentis
           K5]
          Length = 158

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 102/157 (64%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   ++ EL+  +  +RPRI  +I+EAR +GDL ENAEY AA+E Q   E 
Sbjct: 1   MQRYPMTPQGHAALEAELKQLKSIDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEA 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A+VID +T     R+ FG +V +   ++ ++K Y+IVGD EAD ++G +
Sbjct: 61  RIRDIEAKLGGAQVIDPTTLPKDGRVIFGVSVVIENMDTEEEKQYKIVGDDEADFKAGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIAR LIGK  GD   +  P G   YEI++V++
Sbjct: 121 SVNSPIARGLIGKSEGDEARIETPKGVVEYEIMKVIY 157


>gi|86131276|ref|ZP_01049875.1| transcription elongation factor GreA/GreB family protein [Dokdonia
           donghaensis MED134]
 gi|85818687|gb|EAQ39847.1| transcription elongation factor GreA/GreB family protein [Dokdonia
           donghaensis MED134]
          Length = 158

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 94/156 (60%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T++G  K++ EL   +  ERP+  + I++AR  GDLSENAEY AAKE Q + E
Sbjct: 1   MSKVNYYTAEGLQKLKDELNHLRDVERPKASQDIADARDKGDLSENAEYDAAKEAQGMLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+++LE +   A +ID S +   ++   +TV +  + +G    Y++V   EAD++ GL+
Sbjct: 61  MRISKLEELAANARIIDESQLDTSKVLVHSTVKIKNQTNGATMTYKLVAQNEADIKKGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S+ SPI + L+GKE+GD+  +  P G   ++++ + 
Sbjct: 121 SVDSPIGKGLLGKEVGDVAEIQVPSGIMKFDVVSIT 156


>gi|117926297|ref|YP_866914.1| transcription elongation factor GreA [Magnetococcus sp. MC-1]
 gi|166200673|sp|A0LC15|GREA_MAGSM RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|117610053|gb|ABK45508.1| transcription elongation factor GreA [Magnetococcus sp. MC-1]
          Length = 157

 Score =  146 bits (369), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 80/157 (50%), Positives = 120/157 (76%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K+P+T +G  ++++EL+ R+  +R RII AI EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1   MNPKVPMTLEGAQQLKEELKRRKTTDRKRIIAAIEEARAHGDLSENAEYHAAKEQQSFNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+A+LE ++  AEVID S ++  RI FGA V+++++++ ++  Y IVGD+EAD++ G +
Sbjct: 61  GRIAKLEGMLASAEVIDTSRLNSSRIVFGAKVTVIDEDTEEESTYHIVGDEEADLEKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SISSP+AR +IGKE GD I V APGG + +E++++ +
Sbjct: 121 SISSPMARGMIGKEAGDSIEVRAPGGTRHFEVVEITF 157


>gi|307720542|ref|YP_003891682.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM
           16294]
 gi|306978635|gb|ADN08670.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM
           16294]
          Length = 165

 Score =  146 bits (368), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 64/157 (40%), Positives = 108/157 (68%), Gaps = 1/157 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           + KI P+T  G++K+Q E++  ++ +RP ++KAI EA  +GDL ENAEY AAKE Q   +
Sbjct: 1   MQKIEPMTLFGYEKLQAEVKDLKEVKRPGVVKAIEEALEHGDLKENAEYHAAKEQQKNID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+AEL+ I+  ++++D + +   +++FG+TV +   ++ ++ +Y IVG  E++   GL+
Sbjct: 61  NRLAELQEILGNSQIVDPTELEHAKVSFGSTVVMTNLDTDEEVSYTIVGGCESNPDIGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S +SP+A+ L+GKE GD + V  PGGEK +EI +V +
Sbjct: 121 SFNSPLAKQLLGKEEGDEVKVRLPGGEKEFEIDEVKY 157


>gi|285018124|ref|YP_003375835.1| transcription elongation factor grea (transcript cleavage factor
           grea) protein [Xanthomonas albilineans GPE PC73]
 gi|283473342|emb|CBA15847.1| probable transcription elongation factor grea (transcript cleavage
           factor grea) protein [Xanthomonas albilineans]
          Length = 158

 Score =  146 bits (368), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 75/154 (48%), Positives = 114/154 (74%), Gaps = 1/154 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T +G  ++++EL   +  +RP +I AI+EARA+GDL ENAEY AA+E Q   EGR+ +
Sbjct: 4   PITLQGAQRLREELDHLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQGFIEGRIKQ 63

Query: 66  LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           LE+ ++ AEVIDIS ++   ++ FGATV+L +  + ++K YQ+VGD EAD++ GL++ISS
Sbjct: 64  LESELSHAEVIDISKLAVGSKVVFGATVTLADVETDEEKRYQLVGDLEADIKLGLIAISS 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           P+ARALIGK  GD + ++AP G + YEI+ V ++
Sbjct: 124 PLARALIGKMEGDSVGIDAPAGHREYEIVSVQYL 157


>gi|315126858|ref|YP_004068861.1| transcription elongation factor greA [Pseudoalteromonas sp. SM9913]
 gi|315015372|gb|ADT68710.1| transcription elongation factor greA [Pseudoalteromonas sp. SM9913]
          Length = 158

 Score =  146 bits (368), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 104/158 (65%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G   ++ EL   +   RP+I+  I++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQSIPMTVRGAKLLRDELNELKTVTRPKIVSDIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++  ++ID++ M    ++ FG TV++V   +  +  YQIVGD EAD++S L+
Sbjct: 61  RIQEIEAKLSNMQMIDVTKMPNTGKVIFGTTVTIVNVETDAEVKYQIVGDDEADIKSNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK+  D + +  P G+  YEI++V +I
Sbjct: 121 SVNSPIARGLIGKQADDAVIIKTPKGDVEYEIIEVEYI 158


>gi|89052989|ref|YP_508440.1| transcription elongation factor GreA [Jannaschia sp. CCS1]
 gi|122999643|sp|Q28V47|GREA_JANSC RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|88862538|gb|ABD53415.1| GreA/GreB family elongation factor [Jannaschia sp. CCS1]
          Length = 156

 Score =  146 bits (368), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 83/157 (52%), Positives = 117/157 (74%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T KG + +  EL+  +  ERP IIKAI+EAR +GDLSENAEY +AKE Q+  EG
Sbjct: 1   MEKIPMTPKGLEAMNGELKQLKSVERPAIIKAIAEAREHGDLSENAEYHSAKEKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE  I+ A+VID +T+S   I FGATV LV++ + ++K Y IVG+ EAD++ GL++
Sbjct: 61  RIKELEGSISLAQVIDPATLS-GAIKFGATVDLVDEETEEEKTYMIVGEAEADIEKGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARALIGKE GD + V  PGG K +EI+++ ++
Sbjct: 120 IKSPLARALIGKEEGDSVEVRTPGGAKGFEIVKISYV 156


>gi|57237342|ref|YP_178355.1| transcription elongation factor GreA [Campylobacter jejuni RM1221]
 gi|88597201|ref|ZP_01100436.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|148926989|ref|ZP_01810665.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|157414583|ref|YP_001481839.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|205356059|ref|ZP_03222827.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|218561949|ref|YP_002343728.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|25453017|sp|Q9PIK9|GREA_CAMJE RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|73621018|sp|Q5HWI0|GREA_CAMJR RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|172047031|sp|A8FK75|GREA_CAMJ8 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|57166146|gb|AAW34925.1| transcription elongation factor GreA [Campylobacter jejuni RM1221]
 gi|88190262|gb|EAQ94236.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359655|emb|CAL34440.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|145844397|gb|EDK21506.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|157385547|gb|ABV51862.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
           81116]
 gi|205346183|gb|EDZ32818.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|284925562|gb|ADC27914.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|307747227|gb|ADN90497.1| Transcription elongation factor greA [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315057711|gb|ADT72040.1| Transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315927206|gb|EFV06556.1| Transcription elongation factor GreA [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315930041|gb|EFV09180.1| Transcription elongation factor [Campylobacter jejuni subsp. jejuni
           305]
          Length = 161

 Score =  146 bits (368), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 103/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P++  G+DK+  EL+  +  +RP ++  I  AR++GDL ENAEY AA+E Q L E 
Sbjct: 1   MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AEL +++ RA+VID S+   D + FG++V +++ ++  +  Y +VG  E ++  G +S
Sbjct: 61  RIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGNLDKGYIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SPIA+A++GK+ GD   V  P GE  +EIL + +
Sbjct: 121 IASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINY 156


>gi|332993759|gb|AEF03814.1| transcription elongation factor GreA [Alteromonas sp. SN2]
          Length = 158

 Score =  146 bits (368), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T+ G   ++ EL   + + RPRII++I+EAR +GDL ENAEY AA+E Q+  EG
Sbjct: 1   MSQYPMTAHGAQLLRDELNELKTKTRPRIIQSIAEAREHGDLKENAEYHAAREQQSFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++ID++ M    ++ FG TV+++  ++ ++  Y+IVGD EAD++   +
Sbjct: 61  RIQDIEGKLSNAQIIDVTKMENKGKVIFGTTVTILNVDTDEETTYRIVGDDEADIKQNRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKEL D++++  P G    EI++V +I
Sbjct: 121 SVNSPIARGLIGKELDDMVTIQTPAGSVEVEIIEVQYI 158


>gi|315453431|ref|YP_004073701.1| transcription elongation factor [Helicobacter felis ATCC 49179]
 gi|315132483|emb|CBY83111.1| transcription elongation factor [Helicobacter felis ATCC 49179]
          Length = 163

 Score =  146 bits (368), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 65/154 (42%), Positives = 101/154 (65%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           + P++  G++KI  EL+  ++ ERP +I+ I  AR +GDL ENAEY AAK+ Q   + R+
Sbjct: 2   QEPMSKYGYEKICAELKRLKEVERPCVIQEIDRAREHGDLKENAEYHAAKDKQAFIDARI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           AEL   +  A+VID ST+S  +++FG+TV ++  ++  +  Y IVG  E+D   GL+S  
Sbjct: 62  AELSQTLANAQVIDPSTLSHQKVSFGSTVKILNLDNDKEFCYTIVGRMESDPSRGLISFG 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIA++L+GK+ GD + V  P GE  +EIL + +
Sbjct: 122 SPIAKSLMGKQKGDEVIVVLPSGENEFEILDIFY 155


>gi|115377193|ref|ZP_01464405.1| transcription elongation factor GreA [Stigmatella aurantiaca
           DW4/3-1]
 gi|310821199|ref|YP_003953557.1| transcription elongation factor GreA [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365776|gb|EAU64799.1| transcription elongation factor GreA [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394271|gb|ADO71730.1| Transcription elongation factor GreA [Stigmatella aurantiaca
           DW4/3-1]
          Length = 169

 Score =  146 bits (368), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 74/157 (47%), Positives = 108/157 (68%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   IP+T  G  K+++EL+  Q  ER +I + I  ARA+GDL ENAEY AAKE Q   E
Sbjct: 1   MSGNIPMTPSGLRKLKEELKQLQTVERGKISREIEVARAHGDLRENAEYHAAKEKQGHIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ +L + I RAEVID S + GD++ FGATV L++  +     Y+IVG+ EAD++   +
Sbjct: 61  GRILDLNDWIARAEVIDTSKLKGDKVVFGATVVLLDSETDKTVTYRIVGELEADIKKRWL 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +++SP+ARALIGK +GD+  V +PGGE+ YE+ ++ +
Sbjct: 121 AVTSPVARALIGKGVGDVALVRSPGGEREYEVQEIRF 157


>gi|153951319|ref|YP_001398665.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|189042239|sp|A7H585|GREA_CAMJD RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|152938765|gb|ABS43506.1| transcription elongation factor GreA [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 161

 Score =  146 bits (368), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 102/156 (65%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P++  G+DK+  EL+  +  +RP ++  I  AR++GDL ENAEY AA+E Q L E 
Sbjct: 1   MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ EL +++ RA+VID S+   D + FG++V +++ ++  +  Y +VG  E D+  G +S
Sbjct: 61  RIVELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGDLDKGYIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SPIARA++GK+ GD   V  P GE  +EIL + +
Sbjct: 121 IASPIARAMLGKKEGDDFKVRLPKGESEFEILSINY 156


>gi|330447386|ref|ZP_08311035.1| transcription elongation factor GreA [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491577|dbj|GAA05532.1| transcription elongation factor GreA [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 157

 Score =  146 bits (368), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 112/158 (70%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G  K++ EL    +  RP I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTVRGEQKLRSELDVLLK-RRPLISQAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A++ID++TM    ++ FG T++L++ ++  +  Y IVGD EAD++  L+
Sbjct: 60  QIRDIEYKLSVAQIIDVTTMPNTGKVIFGTTITLLDLDTDKEVTYCIVGDDEADIKQNLI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK  GD ++++ PGG+K +EIL+V +I
Sbjct: 120 SVNSPIARGLIGKMEGDEVAISTPGGQKEFEILEVQYI 157


>gi|197286719|ref|YP_002152591.1| transcription elongation factor GreB [Proteus mirabilis HI4320]
 gi|227355091|ref|ZP_03839502.1| transcription elongation factor [Proteus mirabilis ATCC 29906]
 gi|194684206|emb|CAR45694.1| transcription elongation factor [Proteus mirabilis HI4320]
 gi|227164878|gb|EEI49725.1| transcription elongation factor [Proteus mirabilis ATCC 29906]
          Length = 159

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + +EL++  +EERPR+ +++SEA A GD SENAEY   K+     +
Sbjct: 1   MAKSNYITRDGWHALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V+L + +   K  +++VG  E D     +
Sbjct: 61  RRVRFLSKRLDELKIVDPDPRQEGKVYFGAWVTLEDDDENIK-TFRLVGPDEFDPAKQWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D +SV  PGG   Y +L + +
Sbjct: 120 SIDSPVARALIGKKVDDEVSVQTPGGIVNYCVLSIKY 156


>gi|75676634|ref|YP_319055.1| transcription elongation factor GreA [Nitrobacter winogradskyi
           Nb-255]
 gi|123773178|sp|Q3SPT8|GREA_NITWN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|74421504|gb|ABA05703.1| transcription elongation factor GreA [Nitrobacter winogradskyi
           Nb-255]
          Length = 158

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 89/157 (56%), Positives = 121/157 (77%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T  G   +  EL+ RQ  +RPRII+ I+EARA+GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVEKVPMTRGGHAALADELKKRQSVDRPRIIEQIAEARAHGDLSENAEYHAAKEEQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+AELE+ + RA++ID+S +SGD I FGATV+L+++++  K  +QIVG+ EAD + G +
Sbjct: 61  GRIAELEDKLARADIIDVSKLSGDTIKFGATVTLIDEDTDKKAVWQIVGEAEADAKQGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+ARALIGK+ G  + V APGG K YEI +V W
Sbjct: 121 SITSPLARALIGKKKGSSVEVVAPGGAKAYEIAKVEW 157


>gi|294670994|ref|ZP_06735850.1| hypothetical protein NEIELOOT_02701 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307481|gb|EFE48724.1| hypothetical protein NEIELOOT_02701 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 158

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/158 (48%), Positives = 117/158 (74%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++ EL+  +   RP +I AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 1   MKKIPLTIRGAELLKNELQQLKSVARPEVIAAIAEARSHGDLSENAEYEAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ ++ A +I+ + +  + ++ FGAT+ L + +SGD   YQIVG+ EAD+++G +
Sbjct: 61  RIAEIEHKLSHAHIINPAEIHAEGKVVFGATLMLEDLDSGDHVRYQIVGEDEADIKAGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIARALIGKE GD+  V APGG + YEI++V ++
Sbjct: 121 SVVSPIARALIGKEEGDVAEVQAPGGVREYEIVEVQYV 158


>gi|121635119|ref|YP_975364.1| transcription elongation factor [Neisseria meningitidis FAM18]
 gi|218768434|ref|YP_002342946.1| transcription elongation factor GreA [Neisseria meningitidis Z2491]
 gi|254805211|ref|YP_003083432.1| Transcription elongation factor [Neisseria meningitidis alpha14]
 gi|261377466|ref|ZP_05982039.1| transcription elongation factor GreA [Neisseria cinerea ATCC 14685]
 gi|296314208|ref|ZP_06864149.1| transcription elongation factor GreA [Neisseria polysaccharea ATCC
           43768]
 gi|25453011|sp|Q9JTT4|GREA_NEIMA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|120866825|emb|CAM10583.1| transcription elongation factor [Neisseria meningitidis FAM18]
 gi|121052442|emb|CAM08778.1| transcription elongation factor [Neisseria meningitidis Z2491]
 gi|254668753|emb|CBA06621.1| Transcription elongation factor [Neisseria meningitidis alpha14]
 gi|254672956|emb|CBA07383.1| Transcription elongation factor [Neisseria meningitidis alpha275]
 gi|261392308|emb|CAX49834.1| transcription elongation factor GreA (transcript cleavage factor
           GreA) [Neisseria meningitidis 8013]
 gi|269146195|gb|EEZ72613.1| transcription elongation factor GreA [Neisseria cinerea ATCC 14685]
 gi|296839104|gb|EFH23042.1| transcription elongation factor GreA [Neisseria polysaccharea ATCC
           43768]
 gi|308389534|gb|ADO31854.1| transcription elongation factor [Neisseria meningitidis alpha710]
 gi|319410678|emb|CBY91057.1| transcription elongation factor GreA (transcript cleavage factor
           GreA) [Neisseria meningitidis WUE 2594]
 gi|325128511|gb|EGC51389.1| transcription elongation factor greA [Neisseria meningitidis N1568]
 gi|325134589|gb|EGC57233.1| transcription elongation factor greA [Neisseria meningitidis
           M13399]
 gi|325138430|gb|EGC60996.1| transcription elongation factor greA [Neisseria meningitidis
           ES14902]
 gi|325144750|gb|EGC67045.1| transcription elongation factor greA [Neisseria meningitidis
           M01-240013]
 gi|325198564|gb|ADY94020.1| transcription elongation factor greA [Neisseria meningitidis G2136]
 gi|325201872|gb|ADY97326.1| transcription elongation factor greA [Neisseria meningitidis
           M01-240149]
 gi|325204417|gb|ADY99870.1| transcription elongation factor greA [Neisseria meningitidis
           M01-240355]
 gi|325205816|gb|ADZ01269.1| transcription elongation factor greA [Neisseria meningitidis
           M04-240196]
 gi|325208376|gb|ADZ03828.1| transcription elongation factor greA [Neisseria meningitidis
           NZ-05/33]
          Length = 158

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++QEL+  +   RP +I+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 1   MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R++ELE+ ++ A +I+ + +  + +I FG TV+L +  + +   YQIVG+ EAD++ G +
Sbjct: 61  RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + SPIARALIGKE GD   V APGG + Y+I++V +I
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158


>gi|298206886|ref|YP_003715065.1| putative transcription elongation factor [Croceibacter atlanticus
           HTCC2559]
 gi|83849520|gb|EAP87388.1| putative transcription elongation factor [Croceibacter atlanticus
           HTCC2559]
          Length = 158

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 97/155 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T +G  K++ EL   +  ERP+  +AI+EAR  GDLSENAEY AAKE Q + E
Sbjct: 1   MSKVNYYTEEGLKKLRDELDLLRDVERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++++LE +++ A VID S +   ++   ++V +  + +G +  Y++V   E+D++SG +
Sbjct: 61  MKISKLEGVLSNARVIDDSQLDTSKVLIHSSVKIKHQGNGAEMTYKLVAQSESDLKSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SPI + L+GK+ GD+  V  P G   +++++V
Sbjct: 121 SVDSPIGKGLLGKQEGDVAEVTTPNGTIKFDVIKV 155


>gi|289579209|ref|YP_003477836.1| GreA/GreB family elongation factor [Thermoanaerobacter italicus
           Ab9]
 gi|297545389|ref|YP_003677691.1| GreA/GreB family elongation factor [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528922|gb|ADD03274.1| GreA/GreB family elongation factor [Thermoanaerobacter italicus
           Ab9]
 gi|296843164|gb|ADH61680.1| GreA/GreB family elongation factor [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 157

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 98/156 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   + +T +G  K+++EL + +  +R  + + I +ARA+GDLSEN+EY  AK  Q   E
Sbjct: 1   MSKPVILTYEGLKKLEEELEYLKTVKRAEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+A LE ++  A+VID   +  D+++ G TV + +++  ++  Y IVG  EAD  +  +
Sbjct: 61  GRIATLEAMLKNAKVIDEEDIKLDQVSIGCTVKVYDESYNEEVEYTIVGSAEADPMNNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPI +AL+GK++GD++SV  P G    +IL++ 
Sbjct: 121 SDESPIGKALLGKKVGDVVSVEVPAGIINLKILEIR 156


>gi|21672645|ref|NP_660712.1| transcription elongation factor GreA [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008517|sp|Q8K9G6|GREA_BUCAP RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|21623280|gb|AAM67923.1| transcription elongation factor GreA [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 159

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/159 (42%), Positives = 111/159 (69%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M++ IP+T +G +K+++EL   +  +RPRI   I+EAR +GDL ENAEY +A+E Q+  E
Sbjct: 1   MINLIPMTVRGAEKLREELEQLKNVKRPRITVQIAEARKHGDLKENAEYHSAREEQSFCE 60

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+ E+E+ ++ +++IDI+ +S D R+ FG+TV+++   +     YQIVGD E+D +  L
Sbjct: 61  GRIQEIESKLSNSQIIDITKISNDGRVVFGSTVTILNIKNNAVFTYQIVGDDESDFKKNL 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SI+SP++R LIGK +  I  ++ P G   Y+IL++ +I
Sbjct: 121 ISINSPMSRGLIGKTVNTIAIIHTPSGNVKYKILKIDYI 159


>gi|296108269|ref|YP_003619970.1| transcription elongation factor GreA [Legionella pneumophila
           2300/99 Alcoy]
 gi|295650171|gb|ADG26018.1| transcription elongation factor GreA [Legionella pneumophila
           2300/99 Alcoy]
          Length = 155

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/153 (48%), Positives = 110/153 (71%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G + +++EL   +  +RPRI++AI+ ARA+GDL ENAEY AA+E Q+ NEGR+ EL
Sbjct: 1   MTVEGAEALKEELHRLKFVDRPRIVEAIATARAHGDLKENAEYHAAREQQSFNEGRIQEL 60

Query: 67  ENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ A++IDIS   +  ++ FG+TV++    +G +  Y+IVG+ EAD++   +S SSP
Sbjct: 61  EAKLSHAQIIDISKLPNNGKVIFGSTVTICHVATGSELTYKIVGEDEADIKLNKISYSSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IARALIGKEL D ++V  PGG   YEI+QV +I
Sbjct: 121 IARALIGKELDDAVTVETPGGMVEYEIIQVQYI 153


>gi|254482448|ref|ZP_05095687.1| transcription elongation factor GreA subfamily [marine gamma
           proteobacterium HTCC2148]
 gi|214037139|gb|EEB77807.1| transcription elongation factor GreA subfamily [marine gamma
           proteobacterium HTCC2148]
          Length = 158

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 108/158 (68%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T  G   ++ EL   ++ ERPRI  AI++AR +GDL ENAEY AA+E Q+  EG
Sbjct: 1   MNKVPMTVAGEAALRSELEHLKKVERPRISDAIADAREHGDLKENAEYHAAREQQSFAEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++  +VID++ ++   ++ FG TV L+   S +   Y IVG+ EADV++  +
Sbjct: 61  RIMEIEGKLSNCQVIDVTQITRTGKVIFGTTVDLINVESDETVTYTIVGEDEADVKNNRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIARA+IGKE GD++ V APGG+  YEI QV  I
Sbjct: 121 SVGSPIARAMIGKEEGDVVLVKAPGGDIEYEIDQVQHI 158


>gi|71065373|ref|YP_264100.1| transcription elongation factor GreA [Psychrobacter arcticus 273-4]
 gi|123775615|sp|Q4FTJ2|GREA_PSYA2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|71038358|gb|AAZ18666.1| GreA transcription elongation factor [Psychrobacter arcticus 273-4]
          Length = 158

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/157 (40%), Positives = 102/157 (64%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   ++ EL+  +  +RPRI  +I+EAR +GDL ENAEY AA+E Q   E 
Sbjct: 1   MQRYPMTPQGHAALEAELKQLKSIDRPRITASIAEAREHGDLKENAEYHAAREQQGFCEA 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A++ID +T     R+ FG +V +   ++ ++K Y+IVGD EAD ++G +
Sbjct: 61  RIRDIEAKLGGAQIIDPATLPKDGRVIFGVSVVIENMDTEEEKQYKIVGDDEADFKAGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIAR LIGK  GD   +  P G   YEI++V++
Sbjct: 121 SVNSPIARGLIGKSEGDEARIETPKGVVEYEIMKVIY 157


>gi|59801297|ref|YP_208009.1| hypothetical protein NGO0899 [Neisseria gonorrhoeae FA 1090]
 gi|239998864|ref|ZP_04718788.1| transcription elongation factor GreA [Neisseria gonorrhoeae 35/02]
 gi|240016658|ref|ZP_04723198.1| transcription elongation factor GreA [Neisseria gonorrhoeae FA6140]
 gi|240112789|ref|ZP_04727279.1| transcription elongation factor GreA [Neisseria gonorrhoeae MS11]
 gi|240123392|ref|ZP_04736348.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID332]
 gi|240128094|ref|ZP_04740755.1| transcription elongation factor GreA [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493651|ref|ZP_05106822.1| transcription elongation factor [Neisseria gonorrhoeae 1291]
 gi|260440648|ref|ZP_05794464.1| transcription elongation factor GreA [Neisseria gonorrhoeae DGI2]
 gi|268594706|ref|ZP_06128873.1| transcription elongation factor [Neisseria gonorrhoeae 35/02]
 gi|268598857|ref|ZP_06133024.1| transcription elongation factor [Neisseria gonorrhoeae MS11]
 gi|268682016|ref|ZP_06148878.1| transcription elongation factor [Neisseria gonorrhoeae PID332]
 gi|268686483|ref|ZP_06153345.1| transcription elongation factor [Neisseria gonorrhoeae SK-93-1035]
 gi|59718192|gb|AAW89597.1| putative transcription elongation factor [Neisseria gonorrhoeae FA
           1090]
 gi|226512691|gb|EEH62036.1| transcription elongation factor [Neisseria gonorrhoeae 1291]
 gi|268548095|gb|EEZ43513.1| transcription elongation factor [Neisseria gonorrhoeae 35/02]
 gi|268582988|gb|EEZ47664.1| transcription elongation factor [Neisseria gonorrhoeae MS11]
 gi|268622300|gb|EEZ54700.1| transcription elongation factor [Neisseria gonorrhoeae PID332]
 gi|268626767|gb|EEZ59167.1| transcription elongation factor [Neisseria gonorrhoeae SK-93-1035]
          Length = 158

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++QEL+  +   RP +I+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 1   MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R++ELE+ ++ A +I+ + +  + +I FG TV+L +  + +   YQIVG+ EAD++ G +
Sbjct: 61  RISELEHKLSVAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + SPIARALIGKE GD   V APGG + Y+I++V +I
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158


>gi|305432833|ref|ZP_07401991.1| transcription elongation factor GreA [Campylobacter coli JV20]
 gi|304443987|gb|EFM36642.1| transcription elongation factor GreA [Campylobacter coli JV20]
          Length = 161

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 103/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P++  G+DK+  EL+  +  +RP ++  I  AR++GDL ENAEY AA+E Q L E 
Sbjct: 1   MQKEPMSQFGYDKLSAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQTLIES 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AEL ++I RA++ID S+   D + FG++V +++ ++  +  Y +VG  E D+  G +S
Sbjct: 61  RIAELSDLIARAQIIDPSSYEHDSVKFGSSVVIMDLDTEKENKYTLVGTCEGDLDKGYIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SPIA+A++GK+ GD   V  P GE  +EI+ + +
Sbjct: 121 IASPIAKAMLGKKEGDEFKVRLPKGESEFEIISINY 156


>gi|119469583|ref|ZP_01612487.1| transcription elongation factor greA [Alteromonadales bacterium
           TW-7]
 gi|119447118|gb|EAW28388.1| transcription elongation factor greA [Alteromonadales bacterium
           TW-7]
          Length = 158

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 108/158 (68%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G D +++EL   +   RP+II  I++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQTIPMTVRGADLLRKELNELKTVTRPKIIADIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++  ++ID++ M    ++ FG TV++V   +  +  YQIVGD EAD+++ L+
Sbjct: 61  RIQEIEAKLSNVQIIDVTKMPNTGKVIFGTTVTIVNVETDAEVKYQIVGDDEADIKNNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK++ D +++  P G+  YEI++V ++
Sbjct: 121 SVNSPIARGLIGKQMDDAVTIKTPKGDVEYEIIEVEYL 158


>gi|92115199|ref|YP_575127.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM
           3043]
 gi|91798289|gb|ABE60428.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM
           3043]
          Length = 158

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T  G  K+++EL   + EERPR+I AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNKVPMTVAGEQKLREELEQLKGEERPRVINAIAEAREHGDLKENAEYHAAREQQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++ ++VID++      ++ FG TV L+  ++ ++  Y+IVG+ EAD+++G +
Sbjct: 61  RIQEIESKLSASQVIDVTKLPKTGKVIFGVTVDLINLHNDEEVRYRIVGEDEADIKAGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIGKE GD + V  PGG+  YEI  V  +
Sbjct: 121 SVTSPIARALIGKEEGDTVLVRTPGGDVEYEIAGVEHL 158


>gi|294340422|emb|CAZ88803.1| Transcription elongation factor greA (Transcript cleavage factor
           greA) [Thiomonas sp. 3As]
          Length = 157

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 82/153 (53%), Positives = 113/153 (73%), Gaps = 1/153 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T KG ++++QEL   +  ERP +I+AI+EARA GDLSENAEY AA++ Q   EGR+A+
Sbjct: 4   PMTRKGAEQLKQELHRLKTIERPAVIQAIAEARAQGDLSENAEYDAARDKQGFIEGRIAD 63

Query: 66  LENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +E  +  A++ID S   +  R+ FGATV L +++SGD+  YQIVGD EAD++ G +SI+S
Sbjct: 64  IEGKLGTAQIIDPSELQADGRVVFGATVELSDESSGDEITYQIVGDDEADLKQGRISINS 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           PIARALIGKE G++  V APGG + YEIL V +
Sbjct: 124 PIARALIGKESGEVAQVAAPGGVRHYEILAVHY 156


>gi|300310712|ref|YP_003774804.1| transcription elongation factor protein [Herbaspirillum seropedicae
           SmR1]
 gi|124483342|emb|CAM32544.1| Transcription elongation factor protein [Herbaspirillum
           seropedicae]
 gi|300073497|gb|ADJ62896.1| transcription elongation factor protein [Herbaspirillum seropedicae
           SmR1]
          Length = 158

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  +P+T +G + +++EL   + ++RP +I AI+EARA GDLSENAEY++AKE Q   EG
Sbjct: 1   MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+A+LE  +  A+++D +   +  R+ F +TV L   +SG+K  YQIVG  EAD++   V
Sbjct: 61  RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIGK  GD+++V AP G K YEIL+V ++
Sbjct: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158


>gi|258545601|ref|ZP_05705835.1| transcription elongation factor GreA [Cardiobacterium hominis ATCC
           15826]
 gi|258519153|gb|EEV88012.1| transcription elongation factor GreA [Cardiobacterium hominis ATCC
           15826]
          Length = 160

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 81/158 (51%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV KIP+T KG   ++ EL   + EERPR+I+AI+EARA+GDL ENAEY AA+E Q   E
Sbjct: 1   MVAKIPMTKKGEQALRAELEKLKSEERPRVIEAIAEARAHGDLKENAEYHAAREQQGFVE 60

Query: 61  GRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+ ELE+ ++ A VID++T     ++ FG TV L + +SG++  Y+IVG+ EAD+++GL
Sbjct: 61  GRIRELEHKLSHANVIDVTTLPQNGKVVFGTTVELEDSDSGEEMTYKIVGEDEADIKAGL 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +S +SPIARAL+GKE G+ + V  P G K  EIL V +
Sbjct: 121 ISNTSPIARALLGKEEGETVEVVIPDGRKMLEILAVRY 158


>gi|167036744|ref|YP_001664322.1| transcription elongation factor GreA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167039463|ref|YP_001662448.1| transcription elongation factor GreA [Thermoanaerobacter sp. X514]
 gi|256751867|ref|ZP_05492739.1| transcription elongation factor GreA [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300915431|ref|ZP_07132744.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X561]
 gi|307266258|ref|ZP_07547799.1| GreA/GreB family elongation factor [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|307725211|ref|YP_003904962.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X513]
 gi|320115167|ref|YP_004185326.1| transcription elongation factor GreA [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|326391992|ref|ZP_08213492.1| transcription elongation factor GreA [Thermoanaerobacter
           ethanolicus JW 200]
 gi|238687609|sp|B0K5B9|GREA_THEPX RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|238687705|sp|B0KCE3|GREA_THEP3 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|166853703|gb|ABY92112.1| transcription elongation factor GreA [Thermoanaerobacter sp. X514]
 gi|166855578|gb|ABY93986.1| transcription elongation factor GreA [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749274|gb|EEU62306.1| transcription elongation factor GreA [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300888491|gb|EFK83640.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X561]
 gi|306918708|gb|EFN48941.1| GreA/GreB family elongation factor [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|307582272|gb|ADN55671.1| GreA/GreB family elongation factor [Thermoanaerobacter sp. X513]
 gi|319928258|gb|ADV78943.1| transcription elongation factor GreA [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|325991960|gb|EGD50452.1| transcription elongation factor GreA [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 157

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 98/156 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   + +T +G  K+++EL + +  +R  + + I +ARA+GDLSEN+EY  AK  Q   E
Sbjct: 1   MSKPVILTYEGLKKLEEELEYLKTVKRAEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+A LE ++  A+VID   +  D+++ G TV + +++  ++  Y IVG  EAD  +  +
Sbjct: 61  GRIATLEAMLKNAKVIDEEDIKLDQVSIGCTVKVYDESYNEEVEYTIVGSAEADPMNNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPI +AL+GK++GD++SV  P G    +IL++ 
Sbjct: 121 SDESPIGKALLGKKVGDVVSVEVPAGIIKLKILEIR 156


>gi|163738891|ref|ZP_02146304.1| transcription elongation factor GreA [Phaeobacter gallaeciensis
           BS107]
 gi|163741863|ref|ZP_02149253.1| transcription elongation factor GreA [Phaeobacter gallaeciensis
           2.10]
 gi|161385036|gb|EDQ09415.1| transcription elongation factor GreA [Phaeobacter gallaeciensis
           2.10]
 gi|161387696|gb|EDQ12052.1| transcription elongation factor GreA [Phaeobacter gallaeciensis
           BS107]
          Length = 156

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/156 (50%), Positives = 119/156 (76%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  G   ++ EL+  +  ERP IIKAI+EAR  GDLSENAEY +A+E Q+  EG
Sbjct: 1   MEKIPMTPTGHAALETELKTLKSVERPAIIKAIAEARELGDLSENAEYHSAREKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I++ A+VI+ + +S   I FGA V++V++++ ++K +QIVG+ EA++++GL++
Sbjct: 61  RIKELEGILSLADVINPAKLS-GAIKFGAKVTVVDEDTDEEKTWQIVGEHEANIEAGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SPIARALIGKE GD + V  PGG++ YEIL++++
Sbjct: 120 IRSPIARALIGKEEGDSVEVRTPGGDRAYEILKIIY 155


>gi|146328850|ref|YP_001210068.1| transcription elongation factor GreA [Dichelobacter nodosus
           VCS1703A]
 gi|146232320|gb|ABQ13298.1| transcription elongation factor GreA [Dichelobacter nodosus
           VCS1703A]
          Length = 160

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/159 (49%), Positives = 112/159 (70%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KIP+T  G + +Q EL   + ++RP +I+AI+EAR +GDL ENAEY AA+E Q   E
Sbjct: 1   MNQKIPMTKAGAEALQAELEKLKSKDRPAVIQAIAEAREHGDLKENAEYHAAREQQGFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+ E+E  ++   +ID++ +  D R+ FG T+ L + NSG+   Y+IVG+ EAD++ G+
Sbjct: 61  GRIQEIEFKLSNVNIIDVTRLPQDGRVVFGTTIELEDANSGEIMKYKIVGEDEADIKKGM 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S SSPIARAL GKE GDI+ VN PGG+K+ EI+ V +I
Sbjct: 121 ISNSSPIARALFGKEEGDIVDVNVPGGQKSLEIIAVHYI 159


>gi|109947754|ref|YP_664982.1| transcription elongation factor GreA [Helicobacter acinonychis str.
           Sheeba]
 gi|123362580|sp|Q17WJ3|GREA_HELAH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|109714975|emb|CAJ99983.1| greA [Helicobacter acinonychis str. Sheeba]
          Length = 164

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/156 (41%), Positives = 103/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++ P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MNREPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L  II+ A+VID   +  ++++FG+T+ ++  ++  + +Y IVG  E+D   GL+S
Sbjct: 61  RIVDLSEIISNAQVIDPGALMHNKVSFGSTIKILNLDNDKEFSYTIVGSVESDPAKGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIA++LIGK  GD+ S+  P GE  +EIL + +
Sbjct: 121 FGSPIAKSLIGKSKGDVASIQLPNGESDFEILDIYY 156


>gi|261400869|ref|ZP_05986994.1| transcription elongation factor GreA [Neisseria lactamica ATCC
           23970]
 gi|313668543|ref|YP_004048827.1| transcription elongation factor [Neisseria lactamica ST-640]
 gi|269209345|gb|EEZ75800.1| transcription elongation factor GreA [Neisseria lactamica ATCC
           23970]
 gi|309379687|emb|CBX21676.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006005|emb|CBN87464.1| transcription elongation factor [Neisseria lactamica 020-06]
          Length = 158

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++QEL+  +   RP +I+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 1   MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R++ELE+ ++ A +I+ + +  + +I FG TV+L +  + +   YQIVG+ EAD++ G +
Sbjct: 61  RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + SPIARALIGKE GD   V APGG + Y+I++V +I
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVQYI 158


>gi|222824365|ref|YP_002575939.1| transcription elongation factor GreA [Campylobacter lari RM2100]
 gi|254799551|sp|B9KDP9|GREA_CAMLR RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|222539586|gb|ACM64687.1| transcription elongation factor GreA [Campylobacter lari RM2100]
          Length = 161

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 106/156 (67%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P++  G++K+++EL   ++ ERP++++ I  AR++GDL ENAEY AA+E Q   EG
Sbjct: 1   MQKEPMSKYGYEKLEKELEHLKKVERPKVVEEIDIARSHGDLKENAEYHAAREKQAFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++AEL ++I+RA++ID ++   D + FG+ V + +  S  +  Y IVG  E +++ G +S
Sbjct: 61  KIAELGDLISRAQIIDPASYEHDSVKFGSCVVVEDLESEKQSTYTIVGVNEGNLEKGYIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SPIARA++GK+ GD   V  P GE  +EI+ + +
Sbjct: 121 INSPIARAMLGKKEGDDFKVRLPKGESEFEIISIEY 156


>gi|90409512|ref|ZP_01217553.1| transcription elongation factor greA (transcript cleavage factor)
           [Psychromonas sp. CNPT3]
 gi|90309381|gb|EAS37625.1| transcription elongation factor greA (transcript cleavage factor)
           [Psychromonas sp. CNPT3]
          Length = 159

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T+ G   +++EL   + E RPRI+ AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MVQYPMTATGAAALRKELERLKNETRPRIVAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A++IDI    +  R+ FG TV++V   + ++  Y+IVGD E+D++  L+
Sbjct: 61  RIQDIEAKLSHAQIIDINKLANNGRVIFGTTVTIVNVETDEEVTYKIVGDDESDIKLNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK + D +++  PGG   YEI+ V +I
Sbjct: 121 SVNSPIARGLIGKMVDDELTIQTPGGAIEYEIINVQYI 158


>gi|50085902|ref|YP_047412.1| transcription elongation factor GreA [Acinetobacter sp. ADP1]
 gi|49531878|emb|CAG69590.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Acinetobacter sp. ADP1]
          Length = 158

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/158 (42%), Positives = 103/158 (65%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +++EL+  +  ERPRII+AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQRYPMTPEGKLALEKELQQLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +   ++ID+       R+ FG TV++   ++ ++K Y+IVGD EAD +   +
Sbjct: 61  RIQDIEGKLGAVQIIDVKELEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GK  GD   +  P GE  YEI+ V +I
Sbjct: 121 SVNSPIARGLLGKSEGDEAKITTPQGEVEYEIVSVEYI 158


>gi|262199269|ref|YP_003270478.1| transcription elongation factor GreB [Haliangium ochraceum DSM
           14365]
 gi|262082616|gb|ACY18585.1| transcription elongation factor GreB [Haliangium ochraceum DSM
           14365]
          Length = 173

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 83/152 (54%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G   +++EL      ERPR+ + +++A A GD SENAEY   K      + R+  
Sbjct: 14  YITPEGARVLREELEQLWLVERPRVTQEVADAAAQGDRSENAEYIYGKRRLREIDRRVRF 73

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +    V+        R+ FGA V+L +   G +  Y+IVG  E DV +G +S+ +P
Sbjct: 74  LGKRLDSLTVVSEPPSDPKRVFFGAWVTLEDDEDGKEVVYRIVGPDEFDVSAGKISMDAP 133

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + RAL+GK  GD ++V  P GE  Y I++V +
Sbjct: 134 VGRALLGKREGDEVTVKRPKGEVVYTIVEVRY 165


>gi|254456594|ref|ZP_05070023.1| transcription elongation factor [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083596|gb|EDZ61022.1| transcription elongation factor [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 158

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK P+T  G +K+++EL + ++++RP I+ AI+EAR++GDL ENAEY AAKE Q+ NEG
Sbjct: 1   MDKEPITLNGLNKLKEELIFLKEKKRPEIVAAIAEARSHGDLKENAEYHAAKEEQSHNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+++II RA VID++ ++ D ++ FG+TV L   ++G+K +Y+IVG  EAD++  L+
Sbjct: 61  RITEIDDIIARANVIDVTKLNNDGKVIFGSTVFLENLDNGEKISYKIVGKDEADLKQKLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
              SPI R LIGK   D++ +  P G K +EI  V +I
Sbjct: 121 FFQSPIGRGLIGKNKNDLVEITTPAGIKNFEIKDVQYI 158


>gi|163732327|ref|ZP_02139773.1| transcription elongation factor GreA [Roseobacter litoralis Och
           149]
 gi|161394625|gb|EDQ18948.1| transcription elongation factor GreA [Roseobacter litoralis Och
           149]
          Length = 156

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/156 (53%), Positives = 118/156 (75%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DKIP+T KG   ++ EL+  +  ERP II AI+EAR +GDLSENAEY +A+E  +  EG
Sbjct: 1   MDKIPMTRKGHTDLEAELKNLKSVERPAIISAIAEAREHGDLSENAEYHSAREKHSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE ++  AEVID S MS   I FGATV+LV++++ ++K +QIVG+ EA+V+ GL++
Sbjct: 61  RIKELEGVLGLAEVIDPSKMS-GTIKFGATVTLVDEDTDEEKTWQIVGEHEANVEKGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SPIARALIGK+ GD + V  PGGEK YE+L++++
Sbjct: 120 IKSPIARALIGKDEGDSVEVRTPGGEKAYEVLKIVY 155


>gi|316984555|gb|EFV63520.1| transcription elongation factor GreA domain protein [Neisseria
           meningitidis H44/76]
          Length = 173

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++QEL+  +   RP +I+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 16  MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 75

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R++ELE+ ++ A +I+ + +  + +I FG TV+L +  + +   YQIVG+ EAD++ G +
Sbjct: 76  RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVIYQIVGEDEADIKQGKI 135

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + SPIARALIGKE GD   V APGG + Y+I++V +I
Sbjct: 136 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 173


>gi|254487531|ref|ZP_05100736.1| transcription elongation factor GreA [Roseobacter sp. GAI101]
 gi|214044400|gb|EEB85038.1| transcription elongation factor GreA [Roseobacter sp. GAI101]
          Length = 160

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 81/155 (52%), Positives = 117/155 (75%), Gaps = 1/155 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KIP+T  G   ++ EL+  +  ERP II+AI+EAR +GDLSENAEY +AKE Q+  EGR
Sbjct: 6   EKIPMTRAGHSALETELKHLKTVERPAIIRAIAEAREHGDLSENAEYHSAKEKQSFIEGR 65

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELE  I+ A+VID + MS   I FGA V+LV++++ ++K YQIVG+ EA+++ GL++I
Sbjct: 66  VKELEGAISLADVIDPAKMS-GAIKFGAKVTLVDEDTDEEKTYQIVGEYEANIEKGLLNI 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SPIARALIGK+ GD + V  PGG K+YE+L++++
Sbjct: 125 KSPIARALIGKDEGDSVEVRTPGGVKSYEVLKIIY 159


>gi|224437954|ref|ZP_03658896.1| transcription elongation factor GreA [Helicobacter cinaedi CCUG
           18818]
          Length = 158

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/151 (40%), Positives = 107/151 (70%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G++K+  EL+  ++ ERP+I+  I  AR++GDL ENAEY AA+E Q   E R+ EL
Sbjct: 1   MTNYGYEKLCAELKNLKEVERPKIVVEIDVARSHGDLKENAEYHAAREKQAFIEARINEL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
             ++++A+VID +++  ++++FG++V ++  ++  +  Y +VG  E++   GL+S+SSPI
Sbjct: 61  GLMLSQAQVIDPASLKHNKVSFGSSVKILNLDTDKEFVYTLVGSMESNPSKGLISVSSPI 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           A+AL+GK+ GD +S+  P GE  +EIL+V +
Sbjct: 121 AKALMGKKQGDEVSIMLPSGENEFEILEVFY 151


>gi|92118375|ref|YP_578104.1| transcription elongation factor GreA [Nitrobacter hamburgensis X14]
 gi|123386993|sp|Q1QJF3|GREA_NITHX RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|91801269|gb|ABE63644.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14]
          Length = 158

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 88/157 (56%), Positives = 121/157 (77%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M++K+P+T  G   +  EL+ RQ  +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1   MIEKVPMTRGGHAALADELKKRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEDQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+AELE+ + RAE+ID+S +SGD I FGATV+L+++++  K  +QIVG+ EAD + G +
Sbjct: 61  GRIAELEDKLARAEIIDVSKLSGDTIKFGATVTLIDEDTDKKAVWQIVGEAEADAKKGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+ARALIGK+ G  + V APGG K YEI +V W
Sbjct: 121 SITSPLARALIGKKKGASVEVVAPGGAKAYEITKVEW 157


>gi|217976860|ref|YP_002361007.1| transcription elongation factor GreA [Methylocella silvestris BL2]
 gi|217502236|gb|ACK49645.1| transcription elongation factor GreA [Methylocella silvestris BL2]
          Length = 152

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 90/151 (59%), Positives = 125/151 (82%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G   ++ EL+ RQQ ERPRII+AI+EAR++GDLSENAEY +AKE Q+LNEGR+AEL
Sbjct: 1   MTAAGHLALEDELKRRQQIERPRIIQAIAEARSHGDLSENAEYHSAKEAQSLNEGRIAEL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E+ ++R+EVID+S +SG  + FGATV+L+++++  +K YQIVG+ EADV+SG VSI+SP 
Sbjct: 61  EDKLSRSEVIDVSKLSGATVMFGATVTLIDEDTEAEKTYQIVGETEADVKSGRVSITSPT 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARALIGK++GD + V  PGG K+YEIL+V +
Sbjct: 121 ARALIGKKVGDTVEVTTPGGGKSYEILKVSF 151


>gi|304391328|ref|ZP_07373272.1| transcription elongation factor GreA [Ahrensia sp. R2A130]
 gi|303296684|gb|EFL91040.1| transcription elongation factor GreA [Ahrensia sp. R2A130]
          Length = 157

 Score =  146 bits (367), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 97/157 (61%), Positives = 123/157 (78%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T  G   ++ E + R  E+R RI+ AISEAR +GDLSENAEY AAKE Q+ NEG
Sbjct: 1   MEKVPMTKPGHAALEAEYKRRTSEDRHRIVAAISEAREHGDLSENAEYHAAKEQQSHNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE++I RAEVIDIS MSGD I FGATV L ++ +G++K+YQIVGDQEADV SG +S
Sbjct: 61  RIMELEDVIARAEVIDISKMSGDTIRFGATVKLEDEQNGEEKHYQIVGDQEADVASGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPI+RALIGKE GD + V APGG + YEIL V ++
Sbjct: 121 ISSPISRALIGKEEGDSVEVAAPGGARAYEILSVQYV 157


>gi|283955240|ref|ZP_06372741.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
           414]
 gi|283793277|gb|EFC32045.1| transcription elongation factor [Campylobacter jejuni subsp. jejuni
           414]
          Length = 161

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 103/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P++  G+DK+  EL+  +  +RP ++  I  AR++GDL ENAEY AA+E Q L E 
Sbjct: 1   MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AEL +++ RA+VID S+   D + FG++V +++ ++  +  Y +VG  E ++  G +S
Sbjct: 61  RIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGNLDKGYIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SPIA+A++GK+ GD   V  P GE  +EI+ + +
Sbjct: 121 IASPIAKAMLGKKEGDDFKVRLPKGESEFEIISINY 156


>gi|115525956|ref|YP_782867.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           BisA53]
 gi|122295116|sp|Q07JJ7|GREA_RHOP5 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|115519903|gb|ABJ07887.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           BisA53]
          Length = 160

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 88/156 (56%), Positives = 123/156 (78%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T+ G+  +Q EL+ RQ  +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NEG
Sbjct: 1   MEKVPMTANGYAALQVELKQRQTVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+A+LE+ + RA+VIDI+ +SGD I FGATV+LV++++  K  +QIVG+ EAD + G +S
Sbjct: 61  RIADLEDKLARADVIDITKLSGDTIMFGATVTLVDEDTEKKAVWQIVGEPEADAKKGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SP+ARALIGK+ G  + V APGG K YEI +V W
Sbjct: 121 ITSPLARALIGKKKGASVEVMAPGGAKAYEITKVEW 156


>gi|319942670|ref|ZP_08016977.1| transcription elongation factor [Sutterella wadsworthensis 3_1_45B]
 gi|319803753|gb|EFW00688.1| transcription elongation factor [Sutterella wadsworthensis 3_1_45B]
          Length = 158

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/157 (50%), Positives = 108/157 (68%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T+ G  K++ EL + ++  RP ++ AI+EAR  GDLSENAEY AA+E Q   EG
Sbjct: 1   MNRIPITAAGAAKLKAELDYLKKTARPNVVAAIAEAREKGDLSENAEYDAAREEQGHIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE  I   +VID  T  +GDRI FGATV+L ++       YQIVGD EAD++  L+
Sbjct: 61  RIAELEGKIPALQVIDPKTVAAGDRIVFGATVTLYDEEEDSNVTYQIVGDDEADIKKNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+SSPIARALIGK  GD +   AP G+ T+E+  V +
Sbjct: 121 SVSSPIARALIGKSEGDTVVFMAPKGKVTFEVETVEY 157


>gi|323495923|ref|ZP_08100991.1| transcription elongation factor GreA [Vibrio sinaloensis DSM 21326]
 gi|323319139|gb|EGA72082.1| transcription elongation factor GreA [Vibrio sinaloensis DSM 21326]
          Length = 157

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G  K+++EL    +  RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTLRGEQKLREELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M    ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60  QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR LIGK  GD + ++ PGGE+ +EI  V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGERDFEIDSVEYI 157


>gi|304413874|ref|ZP_07395291.1| transcription elongation factor [Candidatus Regiella insecticola
           LSR1]
 gi|304283594|gb|EFL91989.1| transcription elongation factor [Candidatus Regiella insecticola
           LSR1]
          Length = 162

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T  G +K+++EL + + + R  II AI+EARA+GDL ENAEY AA+E Q   EG
Sbjct: 1   MAQIPMTVCGEEKLRKELEYLKNKRRQEIITAIAEARAHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ +  + RI FG+TV+++   + ++  Y+IVGD EA+ +  L+
Sbjct: 61  RIQEIETKLSNAQVIDVTEIVNNGRIIFGSTVTVLNIATDEEYIYRIVGDDEANAKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SP+AR LIGK++ D   +  PGG+  YEI+ V ++
Sbjct: 121 SVNSPMARGLIGKQIDDTTVITTPGGDIEYEIIAVEYL 158


>gi|146338409|ref|YP_001203457.1| transcription elongation factor GreA [Bradyrhizobium sp. ORS278]
 gi|146191215|emb|CAL75220.1| Transcription elongation factor greA (Transcript cleavage factor
           greA) [Bradyrhizobium sp. ORS278]
          Length = 188

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/157 (55%), Positives = 126/157 (80%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T+ G+  ++ EL+ RQ  +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 31  MVEKVPMTAGGYAALENELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 90

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+AELE+ + RA++ID++ +SGD I FGATV+L+++++  K  +QIVG+ EAD + G +
Sbjct: 91  GRIAELEDKLARADIIDVAKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEVEADAKKGKI 150

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+ARALIGK++G  + V APGG K+YEI +V W
Sbjct: 151 SITSPLARALIGKKMGTTVEVMAPGGAKSYEIAKVEW 187


>gi|295698488|ref|YP_003603143.1| transcription elongation factor [Candidatus Riesia pediculicola
           USDA]
 gi|291157052|gb|ADD79497.1| transcription elongation factor [Candidatus Riesia pediculicola
           USDA]
          Length = 162

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + ++P+T  G  K+++EL + +  +RP II ++ EAR +GDL ENAEYQAA+E Q+  EG
Sbjct: 1   MKRVPMTLNGEKKLRKELEFLKNVKRPEIITSLIEARKHGDLKENAEYQAAREEQSFYEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A VID++     + + FG+TV+L +  S     YQIVG+ EAD +  L+
Sbjct: 61  RIKEIERKLLNAHVIDVTQLKEKNHVTFGSTVTLKDNISEKISIYQIVGEDEADFKENLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S  SPIA+ +IGK+ GD++ +N P G+  Y IL+V +I
Sbjct: 121 SFCSPIAKGIIGKKEGDVVKINTPNGKAIYTILEVKYI 158


>gi|145298034|ref|YP_001140875.1| transcription elongation factor [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850806|gb|ABO89127.1| transcription elongation factor [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 158

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 119/158 (75%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++  P+T +G +K+++EL + + E RP+II+AI++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNHTPMTVRGAEKLREELDYLKSELRPQIIEAIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++ A+VID++ ++ + R+ FGATV+L++  + ++  Y+IVGD E+D++  ++
Sbjct: 61  RIQEIESKLSNAQVIDVTKIANNGRVIFGATVTLLKSETEEEVVYRIVGDDESDIKQNMI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIGKE+ D++ V  P G+  YEIL V ++
Sbjct: 121 SVNSPIARALIGKEVDDVVIVKTPAGDVEYEILAVAYL 158


>gi|57168415|ref|ZP_00367549.1| transcription elongation factor Cj0287c [Campylobacter coli RM2228]
 gi|57020223|gb|EAL56897.1| transcription elongation factor Cj0287c [Campylobacter coli RM2228]
          Length = 161

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 103/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P++  G+DK+  EL+  +  +RP ++  I  AR++GDL ENAEY AA+E Q L E 
Sbjct: 1   MQKEPMSQFGYDKLSAELKDLKDNQRPAVVIEIDTARSHGDLKENAEYHAAREKQALIES 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AEL ++I RA++ID S+   D + FG++V +++ ++  +  Y +VG  E ++  G +S
Sbjct: 61  RIAELSDLIARAQIIDPSSYEHDSVKFGSSVVIMDLDTEKESKYTLVGICEGNLDKGYIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SPIA+A++GK+ GD   V  P GE  +EI+ + +
Sbjct: 121 IASPIAKAMLGKKEGDEFKVRLPKGESEFEIISINY 156


>gi|240014222|ref|ZP_04721135.1| transcription elongation factor GreA [Neisseria gonorrhoeae DGI18]
 gi|240080847|ref|ZP_04725390.1| transcription elongation factor GreA [Neisseria gonorrhoeae FA19]
 gi|240115541|ref|ZP_04729603.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID18]
 gi|240117836|ref|ZP_04731898.1| transcription elongation factor GreA [Neisseria gonorrhoeae PID1]
 gi|240121785|ref|ZP_04734747.1| transcription elongation factor GreA [Neisseria gonorrhoeae
           PID24-1]
 gi|240125640|ref|ZP_04738526.1| transcription elongation factor GreA [Neisseria gonorrhoeae
           SK-92-679]
 gi|268596964|ref|ZP_06131131.1| transcription elongation factor [Neisseria gonorrhoeae FA19]
 gi|268601215|ref|ZP_06135382.1| transcription elongation factor [Neisseria gonorrhoeae PID18]
 gi|268603535|ref|ZP_06137702.1| transcription elongation factor [Neisseria gonorrhoeae PID1]
 gi|268684227|ref|ZP_06151089.1| transcription elongation factor [Neisseria gonorrhoeae SK-92-679]
 gi|268550752|gb|EEZ45771.1| transcription elongation factor [Neisseria gonorrhoeae FA19]
 gi|268585346|gb|EEZ50022.1| transcription elongation factor [Neisseria gonorrhoeae PID18]
 gi|268587666|gb|EEZ52342.1| transcription elongation factor [Neisseria gonorrhoeae PID1]
 gi|268624511|gb|EEZ56911.1| transcription elongation factor [Neisseria gonorrhoeae SK-92-679]
          Length = 158

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++QEL+  +   RP +I+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 1   MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R++ELE+ ++ A +I+ + +  + +I FG TV+L +  + +   YQIVG+ EAD++ G +
Sbjct: 61  RISELEHKLSVAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + SPIARALIGKE GD   V APGG + Y I++V +I
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYGIIEVRYI 158


>gi|124266456|ref|YP_001020460.1| transcription elongation factor GreA [Methylibium petroleiphilum
           PM1]
 gi|124259231|gb|ABM94225.1| transcription elongation factor GreA [Methylibium petroleiphilum
           PM1]
          Length = 168

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 82/159 (51%), Positives = 118/159 (74%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++  IP+T +G +K+++EL   +  ER  +I+AI+EARA GDLSENAEY+AAK+ Q   E
Sbjct: 10  IMATIPLTKRGAEKLKEELHRLKSVERHAVIQAIAEARAQGDLSENAEYEAAKDKQGFIE 69

Query: 61  GRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+ E+E+ +  A++ID +   +G R+ FGATV L E++SGD   YQIVGD EAD++ GL
Sbjct: 70  GRILEIESKMAAAQIIDPAMLDAGGRVVFGATVELEEESSGDSVTYQIVGDDEADLKQGL 129

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S+SSPIARA+IGKE GD+    APGG + YEI++V ++
Sbjct: 130 ISVSSPIARAMIGKEAGDVAEFQAPGGTRRYEIVEVRYL 168


>gi|88801364|ref|ZP_01116892.1| putative transcription elongation factor [Polaribacter irgensii
           23-P]
 gi|88782022|gb|EAR13199.1| putative transcription elongation factor [Polaribacter irgensii
           23-P]
          Length = 166

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 98/155 (63%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +    + +G  K++ EL   +Q ERPR+   I++AR  GDLSENAEY AAKE Q+  E
Sbjct: 9   MSEISYYSPEGLKKLRDELVQLEQVERPRVTVEIADARDKGDLSENAEYHAAKEEQSHLE 68

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+L+N+I+ A ++D S +   ++   + V +    +G +  Y++V D E DV++G +
Sbjct: 69  FKIAKLKNVISGARILDESQLDTSKVLIHSNVVIKNAINGAEFTYRLVADSETDVRNGKL 128

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S++SPI + L+GK++G++  +  P G   +EI+ +
Sbjct: 129 SVNSPIGKGLLGKKVGEVAEIQVPSGIMKFEIMAI 163


>gi|261409956|ref|YP_003246197.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10]
 gi|261286419|gb|ACX68390.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10]
          Length = 158

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 93/156 (59%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +++ +T +G+DK+Q+EL   +  +R  + + I  A +YGDL EN+EY +AK  Q   E
Sbjct: 1   MAEELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFME 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LE  +  A ++D   +S   +  G+ V L +   G+K  YQ+VG  EADV +  V
Sbjct: 61  TRIIILEKTLNSARIVDAKDVSSTTVNVGSNVVLNDIEFGEKLEYQVVGPAEADVSNNKV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SP+ +AL+GK +GD + V AP G   YE+L++ 
Sbjct: 121 SYESPLGKALMGKAVGDQVHVEAPMGIVKYELLEIK 156


>gi|297569319|ref|YP_003690663.1| GreA/GreB family elongation factor [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925234|gb|ADH86044.1| GreA/GreB family elongation factor [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 161

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/155 (47%), Positives = 114/155 (73%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV++IP+T  G +K++QEL   Q+ ERPRII+AI  AR +GDL ENAEY AAKE Q+  E
Sbjct: 1   MVERIPMTRNGHEKLRQELNQLQRVERPRIIQAIETAREHGDLKENAEYHAAKERQSHVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL++ ++R+EVID S +  +R+ FG  V+LV+ ++ D+  YQ++G +EA V+ G +
Sbjct: 61  GRIMELKDKLSRSEVIDCSALDCERVVFGVVVTLVDLDTDDEIRYQLLGPEEASVEDGSI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SP+ RA+IGK +GD + V  PGG + +E++++
Sbjct: 121 SVLSPLGRAMIGKSVGDEVVVKTPGGIRQFEVMEI 155


>gi|149375765|ref|ZP_01893533.1| Transcription elongation factor [Marinobacter algicola DG893]
 gi|149359890|gb|EDM48346.1| Transcription elongation factor [Marinobacter algicola DG893]
          Length = 159

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 75/159 (47%), Positives = 115/159 (72%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D++P+T  G  ++++EL+  + E+RPR+I AIS+AR +GDL ENAEY AA+E Q+  E
Sbjct: 1   MADRVPMTKAGEIRLREELQKLKSEDRPRVIAAISDAREHGDLKENAEYHAAREQQSFIE 60

Query: 61  GRMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+ E+E  ++ A+VID+ +  +  ++ FG TV L+  ++ ++ +YQIVG+ EAD+++G 
Sbjct: 61  GRIQEIEGKLSAAQVIDVNTIENTGKVIFGTTVQLLNVDTDEQVSYQIVGEDEADIKAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SISSPIARAL+GK  GD+++V  P G   YEI QV  I
Sbjct: 121 LSISSPIARALVGKSEGDVVAVRVPSGTVEYEIEQVEHI 159


>gi|332703955|ref|ZP_08424043.1| transcription elongation factor GreA [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554104|gb|EGJ51148.1| transcription elongation factor GreA [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 163

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 106/156 (67%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP++ +GF ++++EL   ++ +RP II+AI EAR  GDL EN+ Y AA+E   L E 
Sbjct: 1   MSSIPISVEGFQRLEKELHNLKK-DRPEIIQAIKEAREEGDLRENSGYHAARERLGLLEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R++ +E+ + +  +ID++T+ GD+  FGATV + + ++GDKK Y ++G  EA+   G +S
Sbjct: 60  RISFIESRMPQFNIIDLATLGGDKAIFGATVEIEDMDTGDKKRYTLLGPDEAEPTKGSIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ +AL+GKE GD I VNAP G   YEI+ + +
Sbjct: 120 ILSPVGQALLGKEAGDEIVVNAPRGRIQYEIISIRF 155


>gi|149370905|ref|ZP_01890500.1| transcription elongation factor [unidentified eubacterium SCB49]
 gi|149355691|gb|EDM44249.1| transcription elongation factor [unidentified eubacterium SCB49]
          Length = 158

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 92/156 (58%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T +G   +++EL   +  ERP    AI+EAR  GDLSENAEY AAKE Q + E
Sbjct: 1   MSKVSYYTLEGLKSLKEELNQLKDVERPAASNAIAEARDKGDLSENAEYDAAKEAQGMLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+++LE I+  A VID S +   ++   +TV +    +G    Y++V   E+D+++G +
Sbjct: 61  MRISKLEAIVANARVIDESQLDTSKVLIHSTVKIKNATNGATMTYKLVAQSESDLKTGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S+ SPI + L+GK +GD  ++  P G   +EI+++ 
Sbjct: 121 SVDSPIGKGLLGKTVGDTAAIQVPSGTMNFEIVEIT 156


>gi|299132015|ref|ZP_07025210.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2]
 gi|298592152|gb|EFI52352.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2]
          Length = 158

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 90/157 (57%), Positives = 124/157 (78%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T+ G   ++ EL+ RQ  ERPRII+AI+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVEKLPITAAGLVALEDELKQRQSVERPRIIEAIAEARSHGDLSENAEYHAAKEAQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+AELE+ + RA++ID+S +SGD I FGATV+L+++++  K  YQIVG+ EAD + G +
Sbjct: 61  GRIAELEDKLARADIIDVSKLSGDTIKFGATVTLIDEDTEKKVVYQIVGETEADAKKGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+ARALIGK+ G  + V APGG K YE+ +V W
Sbjct: 121 SITSPLARALIGKKKGTSVEVVAPGGAKAYEVAKVDW 157


>gi|254787219|ref|YP_003074648.1| GreA/GreB family elongation factor [Teredinibacter turnerae T7901]
 gi|237686435|gb|ACR13699.1| GreA/GreB family elongation factor [Teredinibacter turnerae T7901]
          Length = 158

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G   +++EL   ++ +RP+I  AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQKYPMTVEGEKALREELDHLKKVQRPKITAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VIDIS M   +++ FG TV L+   + ++ +Y+IVG+ EA+++   +
Sbjct: 61  RIQDIEAKLSNAQVIDISKMPVGEKVIFGVTVRLINVETDEEISYKIVGEDEANLKLNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARAL+GKE+GD+  V APGG+  YEI  V  I
Sbjct: 121 SVTSPIARALVGKEVGDVALVKAPGGDIEYEIDAVSHI 158


>gi|255068112|ref|ZP_05319967.1| transcription elongation factor GreA [Neisseria sicca ATCC 29256]
 gi|261364737|ref|ZP_05977620.1| transcription elongation factor GreA [Neisseria mucosa ATCC 25996]
 gi|255047627|gb|EET43091.1| transcription elongation factor GreA [Neisseria sicca ATCC 29256]
 gi|288567037|gb|EFC88597.1| transcription elongation factor GreA [Neisseria mucosa ATCC 25996]
          Length = 158

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++QEL+  +   RP II+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 1   MQKIPLTVRGAELLKQELQRLKSVARPEIIEAIAEARSHGDLSENAEYEAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R++ELE+ ++ A +I+ + +    +I FG TV+L +  + +   YQIVG+ EAD++ G +
Sbjct: 61  RISELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEHVTYQIVGEDEADIKEGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + SPIARALIGKE GD+  V APGG + Y+I+ V +I
Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIISVQYI 158


>gi|213421313|ref|ZP_03354379.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 150

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/150 (45%), Positives = 109/150 (72%), Gaps = 1/150 (0%)

Query: 10  KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
           +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EGR+ ++E  
Sbjct: 1   RGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAK 60

Query: 70  ITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
           ++ A+VID++ M  + R+ FGATV+++  ++ +++ Y+IVGD EAD +  L+S++SPIAR
Sbjct: 61  LSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIAR 120

Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            LIGKE  D++ +  PGG+  YE+L+V ++
Sbjct: 121 GLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 150


>gi|300113257|ref|YP_003759832.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113]
 gi|299539194|gb|ADJ27511.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113]
          Length = 158

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 74/157 (47%), Positives = 108/157 (68%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T KG  ++++ELR  +   RP+++ AI+EARA+GDL ENAEY AA+E Q   EG
Sbjct: 1   MNKVPLTEKGAQQLREELRELKTVVRPKVVAAIAEARAHGDLKENAEYHAAREEQGFVEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ +LE+ +  A++ID+S      R+ FG TV L+   + +K +YQIVGD EA+++   +
Sbjct: 61  RIRDLEHQLAHAQIIDVSKLQKDGRVVFGVTVDLINIETDEKASYQIVGDLEANIKENKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIARALIGK  GD I V AP G   YEI  + +
Sbjct: 121 SINSPIARALIGKREGDEIQVQAPSGVILYEIAAIGY 157


>gi|27904835|ref|NP_777961.1| transcription elongation factor GreA [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|29611722|sp|P59489|GREA_BUCBP RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|27904233|gb|AAO27066.1| transcription elongation factor GreA [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 159

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D+IP+T  G +K+++EL   +  +RP+IIK+I EAR +GDL EN+EY AA+E Q   E
Sbjct: 1   MNDQIPMTILGVEKLRKELEMLKTIKRPKIIKSIIEARQHGDLKENSEYHAAREEQGFCE 60

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+ E+E  +++A +IDI+ +  +  I FG+TV+++   S  +  Y+IVGD E++ +  L
Sbjct: 61  GRIKEIELKLSKARIIDITKVKNNGVIIFGSTVTILNLTSNQEFTYRIVGDDESNFKRKL 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +SI+SP++R L+GK++ D+ ++  P G+  Y+IL++ +
Sbjct: 121 ISINSPMSRGLVGKKVSDVATIKTPVGDVKYKILKIEY 158


>gi|293381813|ref|ZP_06627786.1| transcription elongation factor GreA [Lactobacillus crispatus
           214-1]
 gi|290921631|gb|EFD98660.1| transcription elongation factor GreA [Lactobacillus crispatus
           214-1]
          Length = 158

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 104/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T++G +K+Q EL+  +  +RP +I+ I  AR++GDLSEN+EY AAK+ Q+  
Sbjct: 1   MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E ++  A+V+D  ++  + ++ G TV+  E  + D + Y IVG  E+D  +G 
Sbjct: 61  EDRIAQVEEMLKYAQVVDAESVDPNEVSVGKTVTYTEVGTDDPETYTIVGSDESDPLNGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK+ G+ +S+  PGG+    I +V 
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGKFDVVINEVK 157


>gi|149192158|ref|ZP_01870378.1| transcription elongation factor GreA [Vibrio shilonii AK1]
 gi|148833998|gb|EDL51015.1| transcription elongation factor GreA [Vibrio shilonii AK1]
          Length = 157

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 115/158 (72%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G  K++++L    +  RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTVRGEQKLREDLDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ +    +I FG+TV+L++ ++  ++ YQIVGD EAD++SG +
Sbjct: 60  QIRDIEYKLSVAQVIDVTKLDNSGKIIFGSTVTLIDIDTDAEQTYQIVGDDEADIKSGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR LIGK  GD +++  PGG+K +EI +V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVTIVTPGGQKDFEIDKVAYI 157


>gi|238899018|ref|YP_002924700.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
 gi|259647646|sp|C4K7K9|GREA_HAMD5 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|229466778|gb|ACQ68552.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon
           pisum)]
          Length = 158

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/157 (45%), Positives = 114/157 (72%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G +K+++EL+  +   RP+II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MTQIPMTLRGAEKLREELQHLKSVLRPQIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++ A++ID++ ++    + FGATV+++  +S +KK YQIVGD EA+ +  L+
Sbjct: 61  RIQEIESKLSHAQIIDVTKIANKGIVIFGATVTVLNTHSEEKKIYQIVGDDEANFKKDLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIAR LI K++ D+  ++ PGGE  YEIL V +
Sbjct: 121 SVNSPIARGLIAKKISDVAVIHTPGGEVEYEILDVKY 157


>gi|260775433|ref|ZP_05884330.1| transcription elongation factor GreA [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608614|gb|EEX34779.1| transcription elongation factor GreA [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 157

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 115/158 (72%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G  K+++EL    +  RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTVRGEQKLREELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M    ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60  QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR L+GK  GD + ++ PGG++ +EI  V ++
Sbjct: 120 SVSSPIARGLVGKMEGDEVVISTPGGDRDFEIDSVEYV 157


>gi|110833180|ref|YP_692039.1| transcription elongation factor GreA [Alcanivorax borkumensis SK2]
 gi|110646291|emb|CAL15767.1| transcription elongation factor GreA [Alcanivorax borkumensis SK2]
          Length = 170

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 116/159 (72%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++ ++P+T+KG   +++EL   ++E+RPRI  AI+EAR +GDL ENAEY AA+E Q   E
Sbjct: 12  IMQRVPMTAKGAKALREELEKLKKEDRPRISAAIAEAREHGDLKENAEYHAAREQQGFCE 71

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+A++E  ++ A++IDI  +    ++ FG TV++++ ++ + K YQIVGD EA+++ G 
Sbjct: 72  GRIADIEGKLSNAQIIDIQDIENTGKVIFGVTVTILDVDTDETKVYQIVGDDEANIKEGK 131

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S++SPIAR LIG+E GD++ ++ PGG + YE+ QV  I
Sbjct: 132 LSVNSPIARGLIGREEGDVVQIDTPGGTREYEVDQVEHI 170


>gi|226946316|ref|YP_002801389.1| transcription elongation factor GreA [Azotobacter vinelandii DJ]
 gi|226721243|gb|ACO80414.1| Prokaryotic transcription elongation factor GreA [Azotobacter
           vinelandii DJ]
          Length = 158

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G   +++EL+  + E RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MTKFPMTVQGARALEEELKHLKTELRPQITQAIAEARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A+VID++ +    ++ FG TV +    + +   YQIVGD EAD++ G +
Sbjct: 61  RIRDIEGRLQNAQVIDVTAIPHTGKVIFGVTVEIANVETDETVVYQIVGDDEADIKQGKL 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARAL+GKE GD+ +V  P G   YEI++V  +
Sbjct: 121 SVSSPIARALVGKEEGDVAAVKTPSGTVEYEIIEVRHV 158


>gi|257095281|ref|YP_003168922.1| transcription elongation factor GreA [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047805|gb|ACV36993.1| transcription elongation factor GreA [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 158

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/157 (51%), Positives = 111/157 (70%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T  G +K++ EL   +  ERPR I AI+EAR++GDLSENAEY AAKE Q   EG
Sbjct: 1   MSKIPLTVHGAEKLRAELHHLKTVERPRAIAAIAEARSHGDLSENAEYDAAKERQGFVEG 60

Query: 62  RMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ +  A++ID     +  R  FGAT+ L ++ SG + +YQIVG+ EAD+++G +
Sbjct: 61  RIKEVESKLANAQIIDPKLLDADGRCVFGATLELEDQESGSRVSYQIVGEDEADIKAGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIARALIGK  GDI  V APGG + YE+L V +
Sbjct: 121 SINSPIARALIGKFAGDIAEVQAPGGVREYEVLNVRY 157


>gi|193213188|ref|YP_001999141.1| transcription elongation factor GreA [Chlorobaculum parvum NCIB
           8327]
 gi|238692652|sp|B3QPT8|GREA_CHLP8 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|193086665|gb|ACF11941.1| transcription elongation factor GreA [Chlorobaculum parvum NCIB
           8327]
          Length = 159

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 99/156 (63%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D+I +T  G++++++EL     + R  +++ I+EAR++GDLSENAEY AA+E Q+  E
Sbjct: 1   MSDRIYLTRDGYNRLKEELHLLSTQTRKEVLEKIAEARSHGDLSENAEYDAAREEQSQLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119
            ++ +LEN +  A ++D   +  DR+    +V L   +  D+   Y +V  +EAD   G 
Sbjct: 61  AKIGDLENKLASATILDPKQIKTDRVYILTSVKLRNLDDEDEIIEYTLVSSEEADSDLGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S+ SP+ RALIGK +GD ++++ P GE  YEIL +
Sbjct: 121 ISVRSPVGRALIGKSVGDKVTISVPKGELHYEILDI 156


>gi|299769004|ref|YP_003731030.1| transcription elongation factor GreA [Acinetobacter sp. DR1]
 gi|298699092|gb|ADI89657.1| transcription elongation factor GreA [Acinetobacter sp. DR1]
          Length = 158

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/158 (42%), Positives = 104/158 (65%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +++EL+  +  ERPRII+AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQRYPMTPEGKIALEKELQHLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A+ ID+ T     R+ FG TV++   ++ ++K Y+IVGD EAD +   +
Sbjct: 61  RIQDIEGKLGAAQEIDVKTLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+ K  GD + +  P GE  YEI+ V ++
Sbjct: 121 SVNSPIARGLLSKSEGDEVKIVTPQGEVEYEIVSVEYL 158


>gi|89900792|ref|YP_523263.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118]
 gi|89345529|gb|ABD69732.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118]
          Length = 180

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/154 (50%), Positives = 106/154 (68%), Gaps = 1/154 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T +G +K++ EL   +  +RP +I AI+EARA GDLSENAEY+ AK+ Q   EGR+ E
Sbjct: 27  PITKRGAEKLKAELHKLKTVDRPWVINAIAEARAQGDLSENAEYEVAKDKQGFIEGRIQE 86

Query: 66  LENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +E  ++  +VID     +  R+ FGATV L ++ SG    YQIVG+ EAD++ GL++I S
Sbjct: 87  IEGKLSVCQVIDPVELHAEGRVVFGATVQLEDEASGAAVTYQIVGEDEADIKLGLINIGS 146

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           PIARALIGKE GD   V APGG K YE++ V ++
Sbjct: 147 PIARALIGKEQGDTAEVQAPGGIKHYEVVAVSYV 180


>gi|15893255|ref|NP_360969.1| transcription elongation factor GreA [Rickettsia conorii str.
           Malish 7]
 gi|157829162|ref|YP_001495404.1| transcription elongation factor GreA [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165933891|ref|YP_001650680.1| transcription elongation factor GreA [Rickettsia rickettsii str.
           Iowa]
 gi|238651107|ref|YP_002916965.1| transcription elongation factor GreA [Rickettsia peacockii str.
           Rustic]
 gi|15620474|gb|AAL03870.1| transcription elongation factor EF [Rickettsia conorii str. Malish
           7]
 gi|157801643|gb|ABV76896.1| transcription elongation factor GreA [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165908978|gb|ABY73274.1| transcription elongation factor [Rickettsia rickettsii str. Iowa]
 gi|238625205|gb|ACR47911.1| transcription elongation factor GreA [Rickettsia peacockii str.
           Rustic]
          Length = 206

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 80/157 (50%), Positives = 114/157 (72%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K P+T+KGF+K++ EL+  +  ER +I   I+EAR +GDLSENAEY+AA+E Q   E
Sbjct: 45  MNTKFPITAKGFEKLEHELKHLKHVERKKISADIAEAREHGDLSENAEYEAAREKQAFIE 104

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAE+IDI  +SGD I FGATV+L++ ++ ++  Y IVG+ EAD+    V
Sbjct: 105 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 164

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIA+ALIGK +GD + V  P G K+YE++ V +
Sbjct: 165 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 201


>gi|91975935|ref|YP_568594.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           BisB5]
 gi|91682391|gb|ABE38693.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           BisB5]
          Length = 165

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 89/157 (56%), Positives = 122/157 (77%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T+ G+  +  EL+ RQ  +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 8   MVEKVPMTAGGYAALSDELKHRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 67

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+AELE+ + RA++IDIS +SGD I FGATV+L+++++  K  +QIVG+ EAD + G +
Sbjct: 68  GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGESEADAKKGKI 127

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+ARALIGK  G  + V APGG K YEI +V W
Sbjct: 128 SITSPLARALIGKTQGTSVEVVAPGGAKAYEIAKVEW 164


>gi|209884272|ref|YP_002288129.1| transcription elongation factor GreA [Oligotropha carboxidovorans
           OM5]
 gi|209872468|gb|ACI92264.1| transcription elongation factor GreA [Oligotropha carboxidovorans
           OM5]
          Length = 178

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 92/157 (58%), Positives = 125/157 (79%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T+ G   +++EL+ RQ  ERPRII+AI+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 21  MVEKLPMTAAGHLALEEELKQRQAVERPRIIEAIAEARSHGDLSENAEYHAAKEAQSHNE 80

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+AELE+ I RA++ID+S +SGD I FGATV+L+++++  K  YQIVG+ EAD + G +
Sbjct: 81  GRIAELEDKIARADIIDVSKLSGDTIKFGATVTLIDEDTEKKAVYQIVGESEADAKKGRI 140

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+ARALIGK+ G  + V APGG K YEI +V W
Sbjct: 141 SITSPLARALIGKKKGTSVEVVAPGGAKAYEIAKVDW 177


>gi|77166029|ref|YP_344554.1| transcription elongation factor GreA [Nitrosococcus oceani ATCC
           19707]
 gi|254436361|ref|ZP_05049867.1| transcription elongation factor GreA subfamily [Nitrosococcus
           oceani AFC27]
 gi|123593533|sp|Q3J822|GREA_NITOC RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|76884343|gb|ABA59024.1| transcription elongation factor GreA [Nitrosococcus oceani ATCC
           19707]
 gi|207088051|gb|EDZ65324.1| transcription elongation factor GreA subfamily [Nitrosococcus
           oceani AFC27]
          Length = 158

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/157 (46%), Positives = 108/157 (68%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T KG  ++++EL+  +   RP+++ AI+EARA+GDL ENAEY AA+E Q   EG
Sbjct: 1   MNKVPLTEKGAQQLREELQELKTVVRPKVVTAIAEARAHGDLKENAEYHAAREEQGFVEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ +LE+ +  A++ID+S      R+ FG TV LV   + ++ +YQIVGD EA+++   +
Sbjct: 61  RIRDLEHQLAHAQIIDVSKLQKDGRVVFGVTVDLVNIETDEEASYQIVGDLEANIKENKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIARALIGK  GD I V AP G   YEI  + +
Sbjct: 121 SINSPIARALIGKREGDEIQVQAPSGIILYEIAAIGY 157


>gi|28198317|ref|NP_778631.1| transcription elongation factor GreA [Xylella fastidiosa Temecula1]
 gi|182680956|ref|YP_001829116.1| transcription elongation factor GreA [Xylella fastidiosa M23]
 gi|32129572|sp|Q87EB7|GREA_XYLFT RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|238691084|sp|B2I844|GREA_XYLF2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|28056387|gb|AAO28280.1| transcriptional elongation factor [Xylella fastidiosa Temecula1]
 gi|182631066|gb|ACB91842.1| transcription elongation factor GreA [Xylella fastidiosa M23]
          Length = 158

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 79/154 (51%), Positives = 110/154 (71%), Gaps = 1/154 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T KG  +++ EL   +  +RP II AI+EARA+GDL ENAEY AA+E Q+  EGR+ +
Sbjct: 4   PMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63

Query: 66  LENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           LE  ++ AEVID     +G +I FGATV+L +  + ++  YQIVGD EAD++ GLV+ISS
Sbjct: 64  LEGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDEESRYQIVGDLEADIKQGLVAISS 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           P+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 124 PVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157


>gi|262369443|ref|ZP_06062771.1| transcription elongation factor [Acinetobacter johnsonii SH046]
 gi|262315511|gb|EEY96550.1| transcription elongation factor [Acinetobacter johnsonii SH046]
          Length = 158

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 102/158 (64%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +++EL   +  ERPRII AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQRYPMTPQGKLALEKELHQLKSIERPRIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A+VID+       R+ FG TV++   ++ ++K Y IVGD EAD +   +
Sbjct: 61  RVQDIEGKLGAAQVIDVKELEQNGRVVFGVTVTIENLDTEEQKTYMIVGDDEADFKINKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GK  GD   +  P GE  YEI++V +I
Sbjct: 121 SVNSPIARGLLGKSEGDEAKIQTPQGEVEYEIVKVAYI 158


>gi|323492033|ref|ZP_08097198.1| transcription elongation factor GreA [Vibrio brasiliensis LMG
           20546]
 gi|323313762|gb|EGA66861.1| transcription elongation factor GreA [Vibrio brasiliensis LMG
           20546]
          Length = 157

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 115/158 (72%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G  K+++EL    +  RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTLRGEQKLREELERLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M    ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60  QIRDIEYKLSVAQVIDVTKMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR LIGK  GD + ++ PGGE+ +EI  V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGERDFEIDSVEYI 157


>gi|89072566|ref|ZP_01159138.1| transcription elongation factor GreA [Photobacterium sp. SKA34]
 gi|90580532|ref|ZP_01236337.1| transcription elongation factor GreA [Vibrio angustum S14]
 gi|89051670|gb|EAR57123.1| transcription elongation factor GreA [Photobacterium sp. SKA34]
 gi|90438190|gb|EAS63376.1| transcription elongation factor GreA [Photobacterium angustum S14]
          Length = 157

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 111/158 (70%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G  K++ EL    +  RP I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTVRGEQKLRSELEVLLK-RRPLISQAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A++ID+ TM    ++ FG T++L++ ++ ++  Y IVGD EA+++  L+
Sbjct: 60  QIRDIEYKLSVAQIIDVKTMPNTGKVIFGTTITLLDLDTDNEVTYCIVGDDEANIKENLI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK  GD +++  PGG+K +EI++V +I
Sbjct: 120 SVNSPIARGLIGKMEGDEVAITTPGGQKEFEIVEVKYI 157


>gi|78187325|ref|YP_375368.1| GreA/GreB family elongation factor [Chlorobium luteolum DSM 273]
 gi|78167227|gb|ABB24325.1| GreA/GreB family elongation factor [Chlorobium luteolum DSM 273]
          Length = 176

 Score =  144 bits (363), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +++ +T  G++++++EL+   QE R  +++ I+EAR++GDLSENAEY AA+E Q+  E
Sbjct: 18  MSERVYLTRDGYNRLKEELQVLVQETRKEVLEKIAEARSHGDLSENAEYDAAREEQSQTE 77

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119
            R+A+LEN +  A ++D   +  D++    +V L   ++  +   Y +V  +EAD   G 
Sbjct: 78  SRIADLENKLASATILDPKQIKTDKVYILTSVELRNLDAPKEIIEYTLVSSEEADSDLGK 137

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S+ SP+ RALIGK  GD +++  P GE  YEIL++
Sbjct: 138 ISVRSPVGRALIGKTAGDKVTIVVPKGELHYEILKI 173


>gi|15677289|ref|NP_274442.1| transcription elongation factor [Neisseria meningitidis MC58]
 gi|25453012|sp|Q9JYU3|GREA_NEIMB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|7226670|gb|AAF41791.1| transcription elongation factor GreA [Neisseria meningitidis MC58]
 gi|325140625|gb|EGC63145.1| transcription elongation factor greA [Neisseria meningitidis CU385]
 gi|325199954|gb|ADY95409.1| transcription elongation factor greA [Neisseria meningitidis
           H44/76]
          Length = 158

 Score =  144 bits (363), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++QEL+  +   RP +I+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 1   MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R++ELE+ ++ A +I+ + +  + +I FG TV+L +  + +   YQIVG+ EAD++ G +
Sbjct: 61  RISELEHKLSVAHIINPTEIHAEGKIVFGTTVTLEDLETEEHVIYQIVGEDEADIKQGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + SPIARALIGKE GD   V APGG + Y+I++V +I
Sbjct: 121 YVGSPIARALIGKEEGDTAEVQAPGGVREYDIIEVRYI 158


>gi|238754105|ref|ZP_04615463.1| Transcription elongation factor greB [Yersinia ruckeri ATCC 29473]
 gi|238707601|gb|EEP99960.1| Transcription elongation factor greB [Yersinia ruckeri ATCC 29473]
          Length = 163

 Score =  144 bits (363), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  +  EL++  +EERPR+ +A+SEA A GD SENAEY   K+     +
Sbjct: 1   MSKSNYITREGWQALDLELKYLWREERPRVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V +       ++ +++VG  E D     +
Sbjct: 61  RRVRFLSKRLDVLKIVDPDPRQEGKVYFGAWVRVENDQGE-ERVFRLVGPDEFDPAKKWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D I+V  P GE TYEIL + +
Sbjct: 120 SIDSPVARALIGKQVDDEITVQTPNGEATYEILAIRY 156


>gi|293609985|ref|ZP_06692287.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828437|gb|EFF86800.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325123193|gb|ADY82716.1| transcription elongation factor, cleaves 3' nucleotide of paused
           Mrna [Acinetobacter calcoaceticus PHEA-2]
          Length = 158

 Score =  144 bits (363), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 103/158 (65%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +++EL+  +  ERPRI +AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQRYPMTPEGKIALEKELQHLKSVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  ++VID+       R+ FG TV++   ++ ++K Y+IVGD EAD +   +
Sbjct: 61  RIQDIEGKLGASQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+ K  GD + +  P GE  YEI+ V ++
Sbjct: 121 SVNSPIARGLLSKSEGDEVKIVTPQGEVEYEIVSVEYL 158


>gi|120437373|ref|YP_863059.1| transcription elongation factor GreA [Gramella forsetii KT0803]
 gi|166200665|sp|A0M5U7|GREA_GRAFK RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|117579523|emb|CAL67992.1| transcription elongation factor GreA [Gramella forsetii KT0803]
          Length = 158

 Score =  144 bits (363), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 94/155 (60%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T +G  K++ EL   +  ERP+  +AI EAR  GDLSENAEY AAKE Q L E
Sbjct: 1   MSKVSYYTPEGLKKLRDELNHLKDVERPKASEAIGEARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            +++++E ++  A VID S +   ++   + V +  + +G +  Y++V   EAD++SG +
Sbjct: 61  MKISKMEEVVANARVIDESQLDTSKVLVHSHVKIKNQTNGAEMTYKLVAQSEADLKSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SPI + L+GK++GD   +  P G   ++++++
Sbjct: 121 SVDSPIGKGLLGKKVGDTAEIEVPNGTVKFDVIEI 155


>gi|329893940|ref|ZP_08269975.1| Transcription elongation factor GreA [gamma proteobacterium
           IMCC3088]
 gi|328923395|gb|EGG30712.1| Transcription elongation factor GreA [gamma proteobacterium
           IMCC3088]
          Length = 159

 Score =  144 bits (363), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/157 (49%), Positives = 109/157 (69%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T  G   ++ EL   ++ ERPRII AI+EAR +GDL ENAEY AA+E Q+  EG
Sbjct: 1   MNKVPMTKAGEMALRAELERLRKVERPRIIAAIAEAREHGDLKENAEYHAAREQQSFAEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VIDI+ +    ++ FG T+ L+   +  +  Y+IVGD EADV+  L+
Sbjct: 61  RIMEIEGKLSYAQVIDITAIPHTGKVIFGTTIDLINLANDQEVTYRIVGDDEADVKRNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+SSPIARALIGKE GD++ V AP G+  YEI QV  
Sbjct: 121 SVSSPIARALIGKEEGDVVVVKAPSGDIEYEIDQVRH 157


>gi|326409521|gb|ADZ66586.1| transcription elongation factor GreA [Brucella melitensis M28]
          Length = 152

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 99/152 (65%), Positives = 133/152 (87%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +GF+K+++ELRWRQQ ERPRII+AI+EARA+GDLSENAEY AAKE Q+LNEGR+ EL
Sbjct: 1   MTPRGFEKLKEELRWRQQSERPRIIEAIAEARAHGDLSENAEYHAAKEAQSLNEGRINEL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E+++ RAEVID+S ++GDRI FGATV+++++++ ++K YQIVGDQEADV+ G +SISSPI
Sbjct: 61  EDLVARAEVIDVSKLTGDRIKFGATVTMIDEDTEEEKIYQIVGDQEADVKEGRISISSPI 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ARALIGK  GD I VNAPGG ++YEI+ + ++
Sbjct: 121 ARALIGKGEGDTIEVNAPGGSRSYEIIALKFV 152


>gi|295425284|ref|ZP_06817987.1| transcription elongation factor GreA [Lactobacillus amylolyticus
           DSM 11664]
 gi|295065060|gb|EFG55965.1| transcription elongation factor GreA [Lactobacillus amylolyticus
           DSM 11664]
          Length = 158

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 103/157 (65%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T++G +K++ ELR  +  +RP +IK I  AR+YGDLSEN+EY AAK+ Q+  
Sbjct: 1   MAEKSFPMTAEGKEKLEAELRDLKLVKRPEVIKRIKVARSYGDLSENSEYDAAKDEQSHV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E ++  A+V+D  ++  + +A G TV+  E    D + Y IVG  E+D  +G 
Sbjct: 61  EDRIAQVEEMLKYAQVVDADSVDPNEVAVGKTVTYTEVGEDDPETYTIVGSDESDPLNGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK+ G+ +S+  PGG+    I +V 
Sbjct: 121 ISNDSPIAQALIGKKKGETVSITTPGGKFDVVINKVE 157


>gi|304311954|ref|YP_003811552.1| Transcription elongation factor [gamma proteobacterium HdN1]
 gi|301797687|emb|CBL45909.1| Transcription elongation factor [gamma proteobacterium HdN1]
          Length = 159

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 74/159 (46%), Positives = 117/159 (73%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M+ ++P+T +G  ++++EL   ++ ERPR++ AI+EARA+GDL ENAEY AAKE Q   E
Sbjct: 1   MIKRVPMTVEGEVRLREELDNLKKVERPRVVAAIAEARAHGDLKENAEYHAAKEQQGFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+AE+E+ ++ A+VIDI+ ++   ++ FG T+ L + +  +++ ++IVG+ EAD + G 
Sbjct: 61  GRIAEIESKLSEAQVIDITRIAPTGKVIFGVTLKLYDVDKDEERAFKIVGEDEADFKEGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S+ SPIAR LIGK +GD +SV+ PGG  TYEIL+V  +
Sbjct: 121 ISVGSPIARGLIGKFVGDEVSVDTPGGGVTYEILEVNHV 159


>gi|90425319|ref|YP_533689.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           BisB18]
 gi|123394824|sp|Q20ZR6|GREA_RHOPB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|90107333|gb|ABD89370.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           BisB18]
          Length = 158

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 88/157 (56%), Positives = 124/157 (78%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M++K+P+T+ G+  ++ EL+ RQ  +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1   MIEKVPMTAGGYAALEVELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+AELE+ + RA++IDIS +SGD I FGATV+L+++++  K  +QIVG+ EAD + G +
Sbjct: 61  GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGEPEADAKKGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+ARALIGK+ G  + V APGG K YEI +V W
Sbjct: 121 SITSPLARALIGKKKGASVEVVAPGGAKAYEITKVEW 157


>gi|315644113|ref|ZP_07897283.1| transcription elongation factor GreA [Paenibacillus vortex V453]
 gi|315280488|gb|EFU43777.1| transcription elongation factor GreA [Paenibacillus vortex V453]
          Length = 163

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 94/156 (60%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +++ +T +G+DK+Q+EL   +  +R  + + I  A +YGDL EN+EY +AK  Q   E
Sbjct: 6   MAEELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFME 65

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LE  +  A ++D   +S   +  G+ V L +    +K  YQ+VG  EADV +  V
Sbjct: 66  TRIIILEKTLNSARIVDSKQVSSTTVNVGSNVVLNDIEFAEKLEYQVVGPAEADVLNNKV 125

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SP+ +AL+GK +GD ++V+AP G   YE+L++ 
Sbjct: 126 SYESPLGKALMGKAVGDQVNVDAPMGIVKYELLEIK 161


>gi|163750815|ref|ZP_02158050.1| transcription elongation factor GreA [Shewanella benthica KT99]
 gi|161329510|gb|EDQ00504.1| transcription elongation factor GreA [Shewanella benthica KT99]
          Length = 158

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T  G +++++EL   + E+RP I +AI  AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MNKVPMTVVGAEQLRKELTHLKFEQRPSITQAIGTARELGDLKENAEYHAAREEQGICEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++  ++ID++ M    RI FG TV+++   + D+  Y+IVG+ EA+++  L+
Sbjct: 61  RIRDIEGKLSNVQIIDVTKMENSGRIIFGTTVTILNVETEDESTYRIVGEDEANIKENLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GK L D +++  PGG   YEI+ V +I
Sbjct: 121 SVTSPIARGLVGKNLDDEVNIQTPGGTTDYEIIAVEYI 158


>gi|157965027|ref|YP_001499851.1| transcription elongation factor GreA [Rickettsia massiliae MTU5]
 gi|157844803|gb|ABV85304.1| Transcription elongation factor GreA [Rickettsia massiliae MTU5]
          Length = 198

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 81/157 (51%), Positives = 115/157 (73%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K P+T+KGF+K++ EL+  +  ER +I + I+EAR +GDLSENAEY+AA+E Q   E
Sbjct: 37  MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 96

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAE+IDI  +SGD I FGATV+L++ ++ +K  Y IVG+ EAD+    V
Sbjct: 97  GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEKVTYIIVGEYEADITRKRV 156

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIA+ALIGK +GD + V  P G K+YE++ V +
Sbjct: 157 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 193


>gi|86143814|ref|ZP_01062190.1| putative transcription elongation factor [Leeuwenhoekiella
           blandensis MED217]
 gi|85829857|gb|EAQ48319.1| putative transcription elongation factor [Leeuwenhoekiella
           blandensis MED217]
          Length = 158

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 97/156 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T++G  K++ EL   +  ERP+  +AI+EAR  GDLSENAEY AAKE Q + E
Sbjct: 1   MSKVSYYTAEGLKKLKDELNQLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R++++E ++  A +ID S +   +    +TV +  + +G +  Y++V   EAD++SG +
Sbjct: 61  MRISKMEELVANARIIDESQLDTSKALVHSTVKIKNQTNGMQMTYKLVAQSEADLKSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S+ SPI + L+GK++G++  V  P G   ++IL++ 
Sbjct: 121 SVDSPIGKGLLGKKVGEVAEVQVPNGTMKFDILEIT 156


>gi|71278345|ref|YP_270131.1| transcription elongation factor GreA [Colwellia psychrerythraea
           34H]
 gi|71144085|gb|AAZ24558.1| transcription elongation factor GreA [Colwellia psychrerythraea
           34H]
          Length = 158

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G D +  EL+  + E+RPRI+K I+ AR +GDL ENAEY AAKE Q   EG
Sbjct: 1   MIKYPMTLRGSDLLHDELKILKTEKRPRIVKDIATAREHGDLKENAEYHAAKEEQGFCEG 60

Query: 62  RMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A+VID++   +  ++ FG TV+L+  ++  +  YQIVGD EAD ++G +
Sbjct: 61  RIQDIEGRLCNAQVIDVTAIPNHGKVIFGTTVTLLNLDTEVEVTYQIVGDDEADFKTGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE+   I +  PGG   YEI+ V  I
Sbjct: 121 SVNSPIARGLIGKEVDSEIEITIPGGVVEYEIVSVEHI 158


>gi|294085795|ref|YP_003552555.1| transcription elongation factor [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292665370|gb|ADE40471.1| Transcription elongation factor [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 167

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 74/155 (47%), Positives = 110/155 (70%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP T++G + I++EL   +  ER  +I AI+ AR +GDLSENAEY AA+E Q+  EG
Sbjct: 6   MEKIPFTAQGLEAIKEELAHLKGTERQAVINAIAVAREHGDLSENAEYHAARERQSFIEG 65

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R++ELE + +R+EVID S ++GD++ FG +V + ++ + ++  + IVG  EAD+  GLVS
Sbjct: 66  RISELEAVTSRSEVIDASQLTGDKVTFGTSVGVADEETDEESIFHIVGPYEADISKGLVS 125

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SSPIAR LIGK +GD   +  PGG K+YEI+ + 
Sbjct: 126 TSSPIARGLIGKGIGDSAEIQTPGGTKSYEIISIE 160


>gi|319403838|emb|CBI77424.1| transcription elongation factor GreA [Bartonella rochalimae ATCC
           BAA-1498]
 gi|319406848|emb|CBI80483.1| transcription elongation factor GreA [Bartonella sp. 1-1C]
          Length = 157

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 101/157 (64%), Positives = 137/157 (87%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T+ GF+ +++ELRWRQQ+ER RII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1   MEKVPMTTAGFESLKEELRWRQQQERRRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+ I RAEVI++S +SGD+I FGAT++L+++++ ++K YQIVGDQEADV++G +S
Sbjct: 61  RINELEDCIARAEVINVSRLSGDKIKFGATINLLDEDTEERKVYQIVGDQEADVKTGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK+ GD+I VNAPGG   YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGTHNYEIIKVQYI 157


>gi|329924684|ref|ZP_08279699.1| transcription elongation factor GreA [Paenibacillus sp. HGF5]
 gi|328940518|gb|EGG36840.1| transcription elongation factor GreA [Paenibacillus sp. HGF5]
          Length = 163

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 92/156 (58%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +++ +T +G+DK+Q+EL   +  +R  + + I  A +YGDL EN+EY +AK  Q   E
Sbjct: 6   MAEELILTQEGYDKLQEELDDLKYVKRKELAERIKLAISYGDLKENSEYHSAKNDQAFME 65

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LE  +  A ++D   +S   +  G+ V L +    ++  YQ+VG  EADV +  V
Sbjct: 66  TRIIILEKTLNNARIVDAKDISSTTVNVGSNVVLNDIEFSERLEYQVVGPAEADVANNKV 125

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SP+ +AL+GK +GD + V AP G   YE+L++ 
Sbjct: 126 SYESPLGKALMGKAVGDKVHVEAPMGIVKYELLEIK 161


>gi|312144281|ref|YP_003995727.1| transcription elongation factor GreA [Halanaerobium sp.
           'sapolanicus']
 gi|311904932|gb|ADQ15373.1| transcription elongation factor GreA [Halanaerobium sp.
           'sapolanicus']
          Length = 160

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 95/156 (60%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +++ +T +GFDK++ EL + Q E+R  + K I  AR +GD+SEN+EY  AK  Q   E
Sbjct: 1   MAEQLMLTEEGFDKLENELDYLQNEKRREVAKRIKVAREFGDISENSEYDDAKNEQAFVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ E++N++  A V+    ++  ++  G TV L   ++  K +Y +VG  EAD  +  +
Sbjct: 61  GRIKEIKNMLNNAHVVKDEDVTDTKVNLGTTVMLYNLDNDTKISYTLVGSAEADPLNHKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPI +A++G  +GD ++V  P GE  YEIL + 
Sbjct: 121 SNESPIGKAILGHVIGDQVTVETPSGEAHYEILSIK 156


>gi|148258011|ref|YP_001242596.1| transcription elongation factor GreA [Bradyrhizobium sp. BTAi1]
 gi|229485760|sp|A5ER96|GREA_BRASB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|146410184|gb|ABQ38690.1| Transcription elongation factor greA (Transcript cleavage factor
           greA) [Bradyrhizobium sp. BTAi1]
          Length = 158

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 88/157 (56%), Positives = 126/157 (80%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+TS G+  ++ EL+ RQ  +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 1   MVEKVPMTSGGYAALENELKQRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+AELE+ + RA+VID++ +SG+ I FGATV+L+++++  K  +QIVG+ EAD + G +
Sbjct: 61  GRIAELEDKLARADVIDVTKLSGETIKFGATVTLIDEDTEKKTVWQIVGEVEADAKKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+ARALIGK++G  + V APGG K+YEI +V W
Sbjct: 121 SITSPLARALIGKKMGTTVEVMAPGGAKSYEIAKVEW 157


>gi|156975672|ref|YP_001446579.1| transcription elongation factor GreA [Vibrio harveyi ATCC BAA-1116]
 gi|156527266|gb|ABU72352.1| hypothetical protein VIBHAR_03407 [Vibrio harveyi ATCC BAA-1116]
          Length = 157

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 111/158 (70%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G   ++ EL    +  RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTLRGEQLLRTELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID+ S  +  ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60  QIRDIEYKLSVAQVIDVTSMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIAR LIGK  GD + +  PGG K +EI  V +I
Sbjct: 120 SISSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157


>gi|118594565|ref|ZP_01551912.1| GreA/GreB family elongation factor [Methylophilales bacterium
           HTCC2181]
 gi|118440343|gb|EAV46970.1| GreA/GreB family elongation factor [Methylophilales bacterium
           HTCC2181]
          Length = 158

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +I +T  G + +++EL+  +  +RP II+AI+EARA GDLSENAEY++AKE Q   EG
Sbjct: 1   MAQIHMTRNGLEALKKELQQLKSVDRPAIIEAIAEARAQGDLSENAEYESAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+A++E  I++AEVID +   +  R  FGAT+ L + ++  K  +QIVGD E+ ++   +
Sbjct: 61  RLADIEAKISQAEVIDPANLKAEGRCVFGATIELEDLDTEKKSTFQIVGDDESSIKDNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI+SP+A+ALIGKE GD++   +PGG K+++IL+VL+I
Sbjct: 121 SINSPLAKALIGKEAGDVVEFESPGGIKSFDILRVLYI 158


>gi|94265017|ref|ZP_01288786.1| Prokaryotic transcription elongation factor GreA [delta
           proteobacterium MLMS-1]
 gi|93454506|gb|EAT04791.1| Prokaryotic transcription elongation factor GreA [delta
           proteobacterium MLMS-1]
          Length = 187

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 71/155 (45%), Positives = 115/155 (74%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV++IP+T +G ++++QEL   Q+++RP +I+AI  AR +GDL ENAEY AAKE Q+  E
Sbjct: 29  MVERIPMTRQGHERLRQELNRLQRQDRPTVIEAIEVAREHGDLKENAEYHAAKERQSHIE 88

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL++ ++RAEVID+  +  +R+ FG  V LV+ ++  + +YQ++G +EADV+ G +
Sbjct: 89  GRIMELKDKLSRAEVIDVEDLDCERVVFGVVVKLVDLDTEAEVSYQMLGPEEADVEQGSI 148

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SP+ RA+IGK +GD I+V  PGG + +E++ +
Sbjct: 149 SVLSPLGRAMIGKSVGDEITVKTPGGVRQFEVMDI 183


>gi|27382489|ref|NP_774018.1| transcription elongation factor GreA [Bradyrhizobium japonicum USDA
           110]
 gi|81734738|sp|Q89DR1|GREA_BRAJA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|27355661|dbj|BAC52643.1| transcription elongation factor [Bradyrhizobium japonicum USDA 110]
          Length = 157

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 92/156 (58%), Positives = 125/156 (80%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+TS GF  + +EL+ RQ E+RPRII+ I+EAR++GDLSENAEY AAKE Q+ NEG
Sbjct: 1   MEKVPMTSAGFAALGEELKKRQSEDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AELE+ + RA++IDIS +SGD I FGATV+LV++++  K  +QIVG+ EAD + G +S
Sbjct: 61  RIAELEDKLARADIIDISKLSGDTIKFGATVTLVDEDTEKKAVWQIVGEVEADAKKGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SP+ARALIGK+ G  + VNAPGG K YEI +V W
Sbjct: 121 ITSPLARALIGKKKGSTVEVNAPGGAKAYEITKVEW 156


>gi|239948368|ref|ZP_04700121.1| transcription elongation factor [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922644|gb|EER22668.1| transcription elongation factor [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 206

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 80/157 (50%), Positives = 115/157 (73%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K P+T+KGF+K++ EL+  +  ER +I + I+EAR +GDLSENAEY+AA+E Q   E
Sbjct: 45  MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 104

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAE+IDI  +SGD I FGATV+L++ ++ ++  Y IVG+ EAD+    V
Sbjct: 105 GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 164

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIA+ALIGK +GD + V  P G K+YE++ V +
Sbjct: 165 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 201


>gi|223038587|ref|ZP_03608880.1| transcription elongation factor GreA [Campylobacter rectus RM3267]
 gi|222879989|gb|EEF15077.1| transcription elongation factor GreA [Campylobacter rectus RM3267]
          Length = 162

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +  P+T  G++KI  EL+  +  ERP I++ I  AR++GDL ENAEY AA+E Q   E
Sbjct: 1   MTE--PMTLFGYEKITNELKNLKTVERPNIVEEIDIARSHGDLKENAEYHAAREKQAFIE 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+AEL +I++RA+VID S    D++ FG+TV +++  +  +K Y +VG  E++++ GL+
Sbjct: 59  SRIAELSDIVSRAKVIDPSEYEHDKVKFGSTVVIMDVETELEKTYTLVGTPESNLERGLI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+A+ LIGK  GD +++N P G    EI+ V +
Sbjct: 119 SINSPLAKQLIGKSEGDEVALNLPNGRSDVEIVSVSY 155


>gi|78777731|ref|YP_394046.1| transcription elongation factor GreA [Sulfurimonas denitrificans
           DSM 1251]
 gi|78498271|gb|ABB44811.1| GreA/GreB family elongation factor [Sulfurimonas denitrificans DSM
           1251]
          Length = 165

 Score =  144 bits (362), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 106/157 (67%), Gaps = 1/157 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           + KI P+T  G++K+Q E++  ++ +RPR++K I EA  +GDL ENAEY AAKE Q + +
Sbjct: 1   MQKIEPMTLFGYNKLQAEVKNIKEVKRPRVVKDIEEALEHGDLKENAEYHAAKEQQKILD 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+AEL  +I  ++++D + +   +++FG+TV + +  S  +  Y IVG  E++   GL+
Sbjct: 61  NRLAELAELIGSSKIVDPTELEHTKVSFGSTVVVCDVISEIEYTYTIVGGCESNPDIGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S +SP+A+ L+G+E GD + V  P G+K +EI++V +
Sbjct: 121 SFNSPLAKQLLGREEGDDVKVQLPNGQKEFEIIEVTY 157


>gi|237748685|ref|ZP_04579165.1| transcription elongation factor protein [Oxalobacter formigenes
           OXCC13]
 gi|229380047|gb|EEO30138.1| transcription elongation factor protein [Oxalobacter formigenes
           OXCC13]
          Length = 158

 Score =  144 bits (362), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 79/158 (50%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IPVT +G   ++ EL+  + ++R  +I AI+EAR++GDLSENAEY AAKE Q   EG
Sbjct: 1   MSSIPVTVRGAQMLRDELQRLKTKDRYEVIAAIAEARSHGDLSENAEYDAAKERQAFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE  ++ A++ID +T  +  +I F ATVS+ +  +GD+  YQIVG+ EAD++   +
Sbjct: 61  RIAELEGKLSSAQIIDPTTLNTNGKIVFAATVSVEDLETGDRVTYQIVGNDEADLKEFKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI+SP+ARALIG+E GD++ VNAP G + YEIL+V++I
Sbjct: 121 SITSPMARALIGREEGDVVEVNAPAGVREYEILEVMFI 158


>gi|303327141|ref|ZP_07357583.1| transcription elongation factor GreA [Desulfovibrio sp. 3_1_syn3]
 gi|302863129|gb|EFL86061.1| transcription elongation factor GreA [Desulfovibrio sp. 3_1_syn3]
          Length = 162

 Score =  144 bits (362), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP++ +G+ K+++EL   +  ERP II+AI EAR  GDL ENA Y AA+E Q + E 
Sbjct: 1   MTSIPISVQGYKKLEEELARLKS-ERPAIIQAIKEAREEGDLRENAGYDAARERQGMAEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  +E+ +   +V+D+  +SGD++ FG+TV + + +SG+ +N+ I+G  EAD   G +S
Sbjct: 60  RIKYIESRLALYQVVDLDKLSGDKVIFGSTVEVEDVDSGESRNFTILGPDEADPSKGSIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SP+ +AL+GKE GD ++V  P G  TYE++ + +
Sbjct: 120 FLSPVGQALLGKEEGDEVTVEIPRGRVTYEVVSIAF 155


>gi|256819149|ref|YP_003140428.1| transcription elongation factor GreA [Capnocytophaga ochracea DSM
           7271]
 gi|315224575|ref|ZP_07866401.1| transcription elongation factor GreA [Capnocytophaga ochracea
           F0287]
 gi|256580732|gb|ACU91867.1| transcription elongation factor GreA [Capnocytophaga ochracea DSM
           7271]
 gi|314945441|gb|EFS97464.1| transcription elongation factor GreA [Capnocytophaga ochracea
           F0287]
          Length = 157

 Score =  144 bits (362), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/155 (40%), Positives = 97/155 (62%), Gaps = 1/155 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           + K+   T++G  K++ EL   +  ERPR  +AI+EAR  GDLSENAEY AAKE Q L E
Sbjct: 1   MKKVSYYTAEGLKKLRDELNQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+LE ++  A +ID S +   ++   +TV L    +  +  Y +V + EAD+++G +
Sbjct: 61  MKIAKLEELVANARIIDESQLDVSKVLVLSTVKLKNLANKMEITYTLVAESEADLKAGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+SSPI + L+GK +G+I  +  P G    EIL++
Sbjct: 121 SVSSPIGKGLLGKSVGEIAEIKVPNGTLKLEILEI 155


>gi|291277117|ref|YP_003516889.1| transcription elongation factor [Helicobacter mustelae 12198]
 gi|290964311|emb|CBG40161.1| transcription elongation factor [Helicobacter mustelae 12198]
          Length = 161

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 63/153 (41%), Positives = 102/153 (66%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T  G++K++ EL+  ++ +RP I+K I  AR++GDL ENAEY AAKE Q   E R+ 
Sbjct: 2   EPITQYGYEKLRAELKDLKEIQRPNIVKDIDIARSHGDLKENAEYHAAKEKQLFIEARIN 61

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +L  +++  ++ID  T+S ++++FG++V +   ++     Y IVG  E+D   GL+S  S
Sbjct: 62  DLTLLLSNVQIIDPHTLSHEKVSFGSSVKIRNLDTEKTFCYTIVGSVESDPARGLISFGS 121

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           PIA++LIGK +GD +S+  P GE  +EIL+V +
Sbjct: 122 PIAKSLIGKIVGDEVSIVLPNGESDFEILEVFY 154


>gi|311747366|ref|ZP_07721151.1| transcription elongation factor GreA [Algoriphagus sp. PR1]
 gi|126579084|gb|EAZ83248.1| transcription elongation factor GreA [Algoriphagus sp. PR1]
          Length = 157

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 96/157 (61%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T +G  +++ EL+  + + R  I K I+EAR  GDLSENAEY AAK+ Q   E
Sbjct: 1   MGKVQYYTEEGLKRLKDELQELKTKGRSDIAKQIAEARDKGDLSENAEYDAAKDAQGHLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+LE ++  A V D S M   ++   +TV +    +G   +Y +V ++EAD+++G +
Sbjct: 61  LKIAKLEAVVGNARVFDNSQMDTSKVGILSTVKIKNVKNGMTVSYTLVSEEEADLKAGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+ SP  + L+GK++G++  +NAP G   +EIL++ +
Sbjct: 121 SLGSPFGKGLVGKKVGEVAEINAPAGALQFEILEISY 157


>gi|71276055|ref|ZP_00652336.1| Prokaryotic transcription elongation factor GreA [Xylella
           fastidiosa Dixon]
 gi|71899477|ref|ZP_00681635.1| Prokaryotic transcription elongation factor GreA [Xylella
           fastidiosa Ann-1]
 gi|170729661|ref|YP_001775094.1| transcription elongation factor GreA [Xylella fastidiosa M12]
 gi|238687951|sp|B0U568|GREA_XYLFM RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|71163138|gb|EAO12859.1| Prokaryotic transcription elongation factor GreA [Xylella
           fastidiosa Dixon]
 gi|71730790|gb|EAO32863.1| Prokaryotic transcription elongation factor GreA [Xylella
           fastidiosa Ann-1]
 gi|167964454|gb|ACA11464.1| GreA/GreB family elongation factor [Xylella fastidiosa M12]
          Length = 158

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 79/154 (51%), Positives = 110/154 (71%), Gaps = 1/154 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T KG  +++ EL   +  +RP II AI+EARA+GDL ENAEY AA+E Q+  EGR+ +
Sbjct: 4   PMTLKGVRRLRDELEHLKLVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63

Query: 66  LENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           LE  ++ AEVID     +G +I FGATV+L +  + ++  YQIVGD EAD++ GLV+ISS
Sbjct: 64  LEGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDEESRYQIVGDLEADIKQGLVAISS 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           P+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 124 PVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157


>gi|213964046|ref|ZP_03392289.1| transcription elongation factor GreA [Capnocytophaga sputigena
           Capno]
 gi|213953328|gb|EEB64667.1| transcription elongation factor GreA [Capnocytophaga sputigena
           Capno]
          Length = 157

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 62/155 (40%), Positives = 96/155 (61%), Gaps = 1/155 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           + K+   T +G  K++ EL   +  ERPR  +AI+EAR  GDLSENAEY AAKE Q L E
Sbjct: 1   MKKVSYYTPEGLKKLRDELNQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+LE ++  A +ID S +   ++   +TV L    +  +  Y +V + EAD+++G +
Sbjct: 61  MKIAKLEELVANARIIDESQLDVSKVLVLSTVKLKNLANKMEITYTLVAESEADLKAGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+SSPI + L+GK +G+I  +  P G    EIL++
Sbjct: 121 SVSSPIGKGLLGKSVGEIAEIKVPNGTLKMEILEI 155


>gi|229587229|ref|YP_002845730.1| transcription elongation factor GreA [Rickettsia africae ESF-5]
 gi|228022279|gb|ACP53987.1| Transcription elongation factor GreA [Rickettsia africae ESF-5]
          Length = 185

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 79/157 (50%), Positives = 114/157 (72%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K P+T+KGF+K++ EL+  +  ER +I   I+EAR +GDLSENAEY+AA+E Q   E
Sbjct: 24  MNTKFPITAKGFEKLEHELKHLKHVERKKISADIAEAREHGDLSENAEYEAAREKQAFIE 83

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAE+IDI  +SGD I FGATV+L++ ++ ++  Y IVG+ EAD+    V
Sbjct: 84  GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 143

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIA+ALIGK +GD + V  P G K+YE++ + +
Sbjct: 144 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTIEY 180


>gi|157804252|ref|YP_001492801.1| transcription elongation factor GreA [Rickettsia canadensis str.
           McKiel]
 gi|166200696|sp|A8F083|GREA_RICCK RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|157785515|gb|ABV74016.1| transcription elongation factor GreA [Rickettsia canadensis str.
           McKiel]
          Length = 162

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 81/157 (51%), Positives = 116/157 (73%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K P+T+KGF K++ EL+  +  ER +I + I+EAR +GDLSENAEY+AA+E Q   E
Sbjct: 1   MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAE+IDIS +SGD I FGATV+L++ ++ +K  Y +VG+ EAD+    V
Sbjct: 61  GRIKELEDMAARAEIIDISKLSGDNIKFGATVTLIDDDTEEKVTYIVVGEYEADITRKRV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIA+ALIGK +GD + V  P G K+YE+++V +
Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVEVEY 157


>gi|157826347|ref|YP_001494067.1| transcription elongation factor GreA [Rickettsia akari str.
           Hartford]
 gi|157800305|gb|ABV75559.1| transcription elongation factor GreA [Rickettsia akari str.
           Hartford]
          Length = 192

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 81/157 (51%), Positives = 115/157 (73%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K P+T+KGF+K++ EL+  +  ER +I + ISEAR +GDLSENAEY+AA+E Q   E
Sbjct: 31  MNTKFPITAKGFEKLEHELKHLKHVERKKISEDISEAREHGDLSENAEYEAAREKQAFIE 90

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAE+IDI  +SGD I FGATV+L++ ++ ++  Y IVG+ EAD+    V
Sbjct: 91  GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 150

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIA+ALIGK +GD + V  P G K+YE++ V +
Sbjct: 151 SIASPIAKALIGKSVGDFVEVTTPRGSKSYEVVTVEY 187


>gi|323700312|ref|ZP_08112224.1| transcription elongation factor GreA [Desulfovibrio sp. ND132]
 gi|323460244|gb|EGB16109.1| transcription elongation factor GreA [Desulfovibrio desulfuricans
           ND132]
          Length = 164

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 110/157 (70%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +D+IP++ +GF+KI QEL   +  +RP II+AI+EARA GDLSENA Y AA+E Q + E 
Sbjct: 1   MDRIPISKQGFEKISQELEDLKA-QRPAIIQAIAEARAEGDLSENAGYDAARERQGMLEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R++ + + +   +V+D+  +SG+R  FGATV + + ++ +++ + ++G  +AD + G +S
Sbjct: 60  RISYINSHMPLFDVLDLDALSGERAIFGATVEVEDIDTEERRTFTLLGPDDADHKKGSIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + SP+ +A++GKE GD + V+AP G   YEI+ V ++
Sbjct: 120 VLSPMGQAILGKEEGDEVIVDAPRGRIEYEIVSVQFL 156


>gi|67459752|ref|YP_247376.1| transcription elongation factor GreA [Rickettsia felis URRWXCal2]
 gi|67005285|gb|AAY62211.1| Transcription elongation factor GreA [Rickettsia felis URRWXCal2]
          Length = 192

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 80/157 (50%), Positives = 115/157 (73%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K P+T+KGF+K++ EL+  +  ER +I + I+EAR +GDLSENAEY+AA+E Q   E
Sbjct: 31  MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 90

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAE+IDI  +SGD I FGATV+L++ ++ ++  Y IVG+ EAD+    V
Sbjct: 91  GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 150

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIA+ALIGK +GD + V  P G K+YE++ V +
Sbjct: 151 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 187


>gi|78485225|ref|YP_391150.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2]
 gi|123755246|sp|Q31H97|GREA_THICR RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|78363511|gb|ABB41476.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2]
          Length = 158

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G D +Q+EL+  ++ ERP +  AI+EAR +GDL ENAEY AA+E Q L E 
Sbjct: 1   MQRHPMTKEGADALQEELQHLKKVERPAVSNAIAEAREHGDLKENAEYHAAREQQGLMEA 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E+++   ++ID++      ++ FG+TV+++  ++ ++  Y+IVG++EAD++   +
Sbjct: 61  RIKQIESLLGSVQIIDVTKLNPNGKVVFGSTVTILNVDTEEEVTYKIVGEEEADIKHNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALI KE G+ I+V AP G   YEI+++ ++
Sbjct: 121 SVNSPIARALIAKEEGEEITVKAPSGNIEYEIVEIQYV 158


>gi|332140822|ref|YP_004426560.1| Transcription elongation factor GreA [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550844|gb|AEA97562.1| Transcription elongation factor GreA [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 153

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 66/153 (43%), Positives = 109/153 (71%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T++G   ++ EL   + + RPRII++I+EAR +GDL ENAEY AA+E Q+  EGR+ ++
Sbjct: 1   MTARGAQMLRDELNELKTKTRPRIIESIAEAREHGDLKENAEYHAAREQQSFCEGRIQDI 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ A++ID++ M    ++ FG TV+++  +S ++  Y+IVGD EAD+++ L+S++SP
Sbjct: 61  EGKLSNAQIIDVTKMENTGKVIFGTTVTILNVDSDEETTYRIVGDDEADIKNNLISVNSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IAR LIGKEL D +++  P G    EI++V +I
Sbjct: 121 IARGLIGKELDDTVTIQTPSGTVEVEIIEVEYI 153


>gi|294142073|ref|YP_003558051.1| transcription elongation factor GreA [Shewanella violacea DSS12]
 gi|293328542|dbj|BAJ03273.1| transcription elongation factor GreA [Shewanella violacea DSS12]
          Length = 158

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 108/158 (68%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T  G +++++EL   + E+RP I +AI  AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MNKVPMTVVGAEQLRKELTHLKFEQRPSITQAIGTARELGDLKENAEYHAAREEQGICEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++  ++ID++ M  + RI FG TV+++   + ++  Y+IVG+ EA+++  L+
Sbjct: 61  RIRDIEGKLSNVQIIDVTKMENNGRIIFGTTVTILNVETEEESTYRIVGEDEANIKDNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GK L D +++  PGG   YEI+ V +I
Sbjct: 121 SVTSPIARGLVGKNLDDEVNIQTPGGITEYEIIAVKYI 158


>gi|308050593|ref|YP_003914159.1| transcription elongation factor GreA [Ferrimonas balearica DSM
           9799]
 gi|307632783|gb|ADN77085.1| transcription elongation factor GreA [Ferrimonas balearica DSM
           9799]
          Length = 158

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + ++P+T +G + +++EL + +   RP+I +AI+ AR  GDL ENAEY AA+E Q L E 
Sbjct: 1   MSQVPMTVRGAELLREELDYLKHTRRPKITEAIAAARELGDLKENAEYHAAREEQGLTEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E+ ++ A++ID++ +  + RI FGAT +L+   S  +  Y+IVGD EAD+++GL+
Sbjct: 61  RIRDIESKLSVAQIIDVTKIPNNGRIIFGATATLLNVESDQEVTYRIVGDDEADLKAGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARA+IGKEL D++ V AP G+  YE+++V ++
Sbjct: 121 SVNSPIARAMIGKELDDVLVVKAPSGDIEYEVVEVKYL 158


>gi|269961971|ref|ZP_06176326.1| transcription elongation factor GreA [Vibrio harveyi 1DA3]
 gi|269833294|gb|EEZ87398.1| transcription elongation factor GreA [Vibrio harveyi 1DA3]
          Length = 157

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 112/158 (70%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G   ++ EL    +  RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTLRGEQLLRTELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++TM    ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60  QIRDIEYKLSVAQVIDVTTMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIAR LIGK  GD + +  PGG K +EI  V +I
Sbjct: 120 SISSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157


>gi|58582509|ref|YP_201525.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427103|gb|AAW76140.1| transcriptional elongation factor [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 170

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 77/154 (50%), Positives = 118/154 (76%), Gaps = 1/154 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+TSKG  ++++EL   +  +RP +I AI+EARA+GDL ENAEY AA+E Q+  EGR+ +
Sbjct: 16  PMTSKGALRLREELEQLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 75

Query: 66  LENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           LE  ++ AE+IDI+   +G++I FGATV+L +  + ++K YQIVGD EAD++ GL++ISS
Sbjct: 76  LEGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISS 135

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           P+ARALIGK  GD ++++AP G++ YE++ V ++
Sbjct: 136 PLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 169


>gi|163753412|ref|ZP_02160536.1| transcription elongation factor [Kordia algicida OT-1]
 gi|161327144|gb|EDP98469.1| transcription elongation factor [Kordia algicida OT-1]
          Length = 158

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 96/156 (61%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T++G  K++ EL   +  ER +  +AI+EAR  GDLSENAEY AAKE Q L E
Sbjct: 1   MSKVSYYTAEGLKKLRDELDHLKNVERLKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R++++E +++ A +ID S +   ++   +TV +    +G +  Y +V + EAD+ +G +
Sbjct: 61  MRISKMEAVLSTARIIDESQLDTSKVLVLSTVRIKNTTNGMEMTYTLVAESEADLAAGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S++SPI + L+GK +G+I  V  P G   +E+L++ 
Sbjct: 121 SVTSPIGKGLLGKSVGEIAEVKVPNGIMKFEVLEIT 156


>gi|326387386|ref|ZP_08208995.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326208042|gb|EGD58850.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 158

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 76/156 (48%), Positives = 112/156 (71%), Gaps = 2/156 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K+P+  +G++K+  EL+  + EERP+I+ AI EARA+GDLSENAEY AAKE Q   E  
Sbjct: 5   EKLPMLQEGYEKLTAELKALR-EERPKIVDAIEEARAHGDLSENAEYHAAKERQGQVEAS 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + +LE+ I+RA++ID +T+SGDRI FGATV+L++        YQIVG  EADV+ G +S 
Sbjct: 64  IGDLEDKISRAQIIDPTTLSGDRIVFGATVTLLDDADKPV-RYQIVGLAEADVKRGRISY 122

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SP+ RALIG+++ D + V  P G+K Y + ++ +I
Sbjct: 123 NSPLGRALIGRKVDDEVEVTVPSGDKFYVVEKIEFI 158


>gi|86748640|ref|YP_485136.1| transcription elongation factor GreA [Rhodopseudomonas palustris
           HaA2]
 gi|86571668|gb|ABD06225.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           HaA2]
          Length = 174

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 89/157 (56%), Positives = 122/157 (77%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+K+P+T+ G+  +  EL+ RQ  +RPRII+ I+EAR++GDLSENAEY AAKE Q+ NE
Sbjct: 17  MVEKVPMTAGGYAALSDELKKRQSVDRPRIIEHIAEARSHGDLSENAEYHAAKEEQSHNE 76

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+AELE+ + RA++IDIS +SGD I FGATV+L+++++  K  +QIVG+ EAD + G +
Sbjct: 77  GRIAELEDKLARADIIDISKLSGDTIKFGATVTLIDEDTEKKAVWQIVGENEADAKKGKI 136

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+ARALIGK  G  + V APGG K YEI +V W
Sbjct: 137 SITSPLARALIGKTKGTSVEVVAPGGAKAYEIAKVEW 173


>gi|298368446|ref|ZP_06979764.1| transcription elongation factor GreA [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282449|gb|EFI23936.1| transcription elongation factor GreA [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 158

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++QEL+  +   RP II+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 1   MQKIPLTVRGAELLKQELQHLKSVARPEIIEAIAEARSHGDLSENAEYEAAKEKQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R++ELE  ++ A +I+ + +    +I FG+TV+L +  + ++  YQIVG+ EAD++   +
Sbjct: 61  RISELEYKLSVAHIINPAEIHAEGKIVFGSTVTLEDMETEEQVTYQIVGEDEADIKEHKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + SPIARALIGKE GD+  V APGG + Y+I+ V +I
Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIISVEYI 158


>gi|238758699|ref|ZP_04619873.1| Transcription elongation factor greB [Yersinia aldovae ATCC 35236]
 gi|238702996|gb|EEP95539.1| Transcription elongation factor greB [Yersinia aldovae ATCC 35236]
          Length = 165

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  +  EL +  +EERP + +A+SEA A GD SENAEY   K+     +
Sbjct: 1   MAKSNYITREGWQALDSELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V +  +    +  +++VG  E D     +
Sbjct: 61  RRVRFLTKRLEVLKIVDPDPRQEGKVFFGAWVRVENELEEQR-TFRLVGPDEFDPAKKWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D ++V  P GE TY IL + +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEVTYWILAIRY 156


>gi|86135044|ref|ZP_01053626.1| transcription elongation factor GreA [Polaribacter sp. MED152]
 gi|85821907|gb|EAQ43054.1| transcription elongation factor GreA [Polaribacter sp. MED152]
          Length = 157

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 101/156 (64%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D    + +G  K+++EL   +Q ERPR+ + I++AR  GDLSENAEY AAKE Q+  E
Sbjct: 1   MSDISYYSPEGLKKLKEELHQLEQVERPRVTQEIADARDKGDLSENAEYHAAKEEQSHLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+L+N++  A ++D S +   +I   + V +    +G + +Y++V D E DV++G +
Sbjct: 61  TKIAKLKNVVANARILDESQLDTSKILIHSNVKIKNTANGMEFSYRLVADSETDVRNGKL 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S++SPI + L+GKE+G+I  +  P G   +EI+++ 
Sbjct: 121 SVNSPIGKGLLGKEVGEIAEIQVPSGIMKFEIVEIT 156


>gi|114763611|ref|ZP_01443016.1| transcription elongation factor GreA [Pelagibaca bermudensis
           HTCC2601]
 gi|114543891|gb|EAU46903.1| transcription elongation factor GreA [Roseovarius sp. HTCC2601]
          Length = 156

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 77/156 (49%), Positives = 115/156 (73%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KI +T  GF  ++ EL+  + +ERP +I+AI+EAR  GDL ENAEY +A+E Q   EG
Sbjct: 1   MEKILITRAGFTALETELKTLKSKERPAVIQAIAEARELGDLKENAEYHSAREKQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ E+E +++ AEVID + +S   + FGATV +V++++ ++K +QIVG+ EA++  GL++
Sbjct: 61  RIKEIEAVMSLAEVIDPTKLS-GAVKFGATVKVVDEDTDEEKTWQIVGEHEANIDKGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SPIARALIGKE GD + V  PGGEK+YEIL + +
Sbjct: 120 IKSPIARALIGKEEGDSVEVRTPGGEKSYEILSIDY 155


>gi|145220082|ref|YP_001130791.1| transcription elongation factor GreA [Prosthecochloris vibrioformis
           DSM 265]
 gi|189042244|sp|A4SFN0|GREA_PROVI RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|145206246|gb|ABP37289.1| transcription elongation factor GreA [Chlorobium phaeovibrioides
           DSM 265]
          Length = 159

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 98/156 (62%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D++ +T  G+++++ EL       R  +++ I+EAR++GDLSENAEY AA+E Q+  E
Sbjct: 1   MSDRVYLTRDGYNRLKDELHELLHVTRAEVLEKIAEARSHGDLSENAEYDAAREQQSQTE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-NYQIVGDQEADVQSGL 119
            R+A+LE+ ++ A ++D   +  D++    +V L+  +   +   Y +V  +E+D   G 
Sbjct: 61  ARIADLESKLSSATILDPKHIKTDKVYILTSVELLNLDDKKETLEYTLVSSEESDSDLGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S+ SP+ RALIGK +GD +++  P GE  YE+ ++
Sbjct: 121 ISVRSPVGRALIGKAVGDKVTIIVPKGELHYEVKKI 156


>gi|254508242|ref|ZP_05120366.1| transcription elongation factor GreA (Transcript cleavage
           factorgreA) [Vibrio parahaemolyticus 16]
 gi|219548859|gb|EED25860.1| transcription elongation factor GreA (Transcript cleavage
           factorgreA) [Vibrio parahaemolyticus 16]
          Length = 157

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 117/158 (74%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G  ++++EL    +  RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTVRGEKQLREELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M    ++ FG+TV+L++ ++ ++K YQIVGD EAD++SG +
Sbjct: 60  QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDVDTDEEKRYQIVGDDEADIKSGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR LIGK  GD ++++ PGG++ +EI +V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVAISTPGGDRDFEIDRVEYI 157


>gi|319405277|emb|CBI78891.1| transcription elongation factor GreA [Bartonella sp. AR 15-3]
          Length = 157

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 101/157 (64%), Positives = 137/157 (87%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T+ GF+ +++ELRWRQQ+ER RII+AISEARA+GDLSENAEY AAKE Q+ NEG
Sbjct: 1   MEKVPMTTAGFESLKEELRWRQQQERRRIIEAISEARAHGDLSENAEYHAAKEAQSHNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+ I RAEVI++S +SGD+I FGAT++L+++++ ++K YQIVGDQEADV++G +S
Sbjct: 61  RINELEDCIARAEVINVSRLSGDKIKFGATINLLDEDTEERKVYQIVGDQEADVKTGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ISSPIARALIGK+ GD+I VNAPGG   YEI++V +I
Sbjct: 121 ISSPIARALIGKQEGDVIEVNAPGGAHNYEIIKVQYI 157


>gi|258405567|ref|YP_003198309.1| transcription elongation factor GreA [Desulfohalobium retbaense DSM
           5692]
 gi|257797794|gb|ACV68731.1| transcription elongation factor GreA [Desulfohalobium retbaense DSM
           5692]
          Length = 161

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 70/156 (44%), Positives = 107/156 (68%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +D IP++ +GF+K++QEL   ++ ERP +I+AI EAR  GDL ENA Y AA+E Q + E 
Sbjct: 1   MDTIPISVEGFEKLKQELENLKK-ERPEVIQAIKEAREEGDLRENAGYDAARERQGMLEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  +E+ + +  VID+ TM GD++AFGATV + +  + + K Y ++G  EA+V  G +S
Sbjct: 60  RITYIESRLPQCNVIDLDTMGGDKVAFGATVEIEDMETEEVKRYTLLGPDEANVDQGSIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SP+A+AL+GK +GD   VNAP G   YE+L + +
Sbjct: 120 VFSPLAKALLGKRVGDEAIVNAPRGRIEYEVLSIEF 155


>gi|311069214|ref|YP_003974137.1| transcription elongation factor GreA [Bacillus atrophaeus 1942]
 gi|310869731|gb|ADP33206.1| transcription elongation factor GreA [Bacillus atrophaeus 1942]
          Length = 158

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 64/157 (40%), Positives = 103/157 (65%), Gaps = 2/157 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++QEL + +  +R  +++ I  AR++GDLSEN+EY +AKE Q  
Sbjct: 1   MAQEKVFPMTEEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  LEN+I  A++I+    + + +  G TV+ +E   GD+++Y IVG  EAD   G
Sbjct: 61  VEGRVTTLENMIRNAKIIEDDGGNSNIVGLGKTVTFIELPDGDEESYTIVGSAEADPFEG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SPIA++LIGK++GD ++V  PGGE   +I+++
Sbjct: 121 KISNDSPIAKSLIGKQVGDQVTVQTPGGEMLVKIVKI 157


>gi|304315887|ref|YP_003851032.1| transcription elongation factor GreA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777389|gb|ADL67948.1| transcription elongation factor GreA [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 157

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 98/155 (63%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  ++ +T  G  K+++EL + +  +RP + + I +ARA+GDLSEN+EY  AK  Q   E
Sbjct: 1   MGKQVILTYDGLKKLEEELDYLKSVKRPEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+A +E ++  A+VID   ++ D+++ G TV + ++   ++  Y IVG  EAD  +  +
Sbjct: 61  GRIATIEAMLRNAQVIDEEDITIDKVSVGCTVKVYDEEFKEESEYTIVGSTEADPMNNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SPI +ALIGK++GD +SV  P G    ++L++
Sbjct: 121 SDESPIGKALIGKKVGDSVSVEVPAGIIKLKVLEI 155


>gi|86148136|ref|ZP_01066435.1| transcription elongation factor GreA [Vibrio sp. MED222]
 gi|218710454|ref|YP_002418075.1| transcription elongation factor GreA [Vibrio splendidus LGP32]
 gi|85834053|gb|EAQ52212.1| transcription elongation factor GreA [Vibrio sp. MED222]
 gi|218323473|emb|CAV19650.1| transcription elongation factor GreA [Vibrio splendidus LGP32]
          Length = 157

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 108/158 (68%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G  +++ EL    +  RP I  AI EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTVRGAQQLRDELDRLLK-LRPIISAAIGEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A++ID++ M    +I FG TV+L++ ++ ++  YQIV + EAD+++G +
Sbjct: 60  QIRDIEYKLSLAQIIDVTQMDNTGKIIFGTTVTLIDVDTDEEFRYQIVSEDEADIKTGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIAR LIGK  GD + ++ PGG+K +EI +V +I
Sbjct: 120 SVKSPIARGLIGKMEGDEVLISTPGGDKDFEIDKVEYI 157


>gi|323705605|ref|ZP_08117179.1| GreA/GreB family elongation factor [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535082|gb|EGB24859.1| GreA/GreB family elongation factor [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 157

 Score =  143 bits (360), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 99/155 (63%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  ++ +T  G  K+++EL + +  +RP + + I +ARA+GDLSEN+EY  AK  Q   E
Sbjct: 1   MGKQVILTYDGLKKLEEELDYLKSVKRPEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+A +E ++  A+VID   ++ D+++ G TV + +++  ++  Y IVG  EAD  +  +
Sbjct: 61  GRIATIEAMLRNAQVIDEEDITIDKVSVGCTVKVYDEDFKEEAEYTIVGSTEADPMNNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SPI +AL+GK++GD ISV  P G    ++L++
Sbjct: 121 SDESPIGKALLGKKVGDTISVEVPAGIIKLKVLEI 155


>gi|253826205|gb|ACT36389.1| transcriptional elogation factor GreA [uncultured bacterium L11E10]
          Length = 158

 Score =  143 bits (360), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 77/153 (50%), Positives = 110/153 (71%), Gaps = 1/153 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T +G  ++++EL + +  +RP +I AI+EARA+GDL ENAEY AA+E Q   EGR+ +
Sbjct: 4   PITKQGAQRLREELDYLKSVKRPEVIAAIAEARAHGDLKENAEYHAAREQQGFIEGRINQ 63

Query: 66  LENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           LE  ++ AEVID++   +G R+ FGATV L   ++ ++K YQIVGD EAD++  L++ISS
Sbjct: 64  LEAELSTAEVIDVAVLDAGSRVVFGATVILAHVDTDEQKTYQIVGDLEADIKQSLIAISS 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           PIARALIGK  GD + + AP GE  YEI+ V +
Sbjct: 124 PIARALIGKNEGDSVVIQAPAGEHEYEIISVSY 156


>gi|319778418|ref|YP_004129331.1| Transcription elongation factor GreA [Taylorella equigenitalis
           MCE9]
 gi|317108442|gb|ADU91188.1| Transcription elongation factor GreA [Taylorella equigenitalis
           MCE9]
          Length = 158

 Score =  143 bits (360), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 80/158 (50%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  +P+T  G  ++ +EL+  +  ERP +I+AI+EARA GDLSENAEY AA+E Q   E 
Sbjct: 1   MSTLPLTKAGSIRLTEELQKLKTVERPAVIQAIAEARAQGDLSENAEYDAARERQGFIEA 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ELE +++ +++I+ ST  +GD+I FGATV L + +SG+   YQIVGD EAD++   +
Sbjct: 61  RIKELEGVLSNSQIIEPSTLEAGDKIVFGATVELEDLDSGELVKYQIVGDAEADIKLNTI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSP+AR LIGK  GD I ++ P GEK YEIL V +I
Sbjct: 121 SISSPVARGLIGKHEGDTIKISVPSGEKEYEILSVEYI 158


>gi|25453016|sp|Q9PEC0|GREA_XYLFA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
          Length = 158

 Score =  143 bits (360), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 80/154 (51%), Positives = 111/154 (72%), Gaps = 1/154 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T KG  +++ EL   +  +RP II AI+EARA+GDL ENAEY AA+E Q+  EGR+ +
Sbjct: 4   PMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63

Query: 66  LENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           LE  ++ AEVID     +G +I FGATV+LV+  + ++  YQIVGD EAD++ GLV+ISS
Sbjct: 64  LEGELSHAEVIDVAKLNAGTKIVFGATVTLVDLETDEESRYQIVGDLEADIKQGLVAISS 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           P+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 124 PVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157


>gi|71897683|ref|ZP_00679928.1| Prokaryotic transcription elongation factor GreA [Xylella
           fastidiosa Ann-1]
 gi|71732586|gb|EAO34639.1| Prokaryotic transcription elongation factor GreA [Xylella
           fastidiosa Ann-1]
          Length = 158

 Score =  143 bits (360), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 79/154 (51%), Positives = 110/154 (71%), Gaps = 1/154 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T KG  +++ EL   +  +RP II AI+EARA+GDL ENAEY AA+E Q+  EGR+ +
Sbjct: 4   PMTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63

Query: 66  LENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           LE  ++ AEVID     +G +I FGATV+L +  + ++  YQIVGD EAD++ GLV+ISS
Sbjct: 64  LEGELSHAEVIDVAKLNAGTKIVFGATVTLADLETDEESRYQIVGDLEADIKQGLVAISS 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           P+ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 124 PVARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 157


>gi|254516627|ref|ZP_05128686.1| GreA/GreB family elongation factor [gamma proteobacterium NOR5-3]
 gi|219675050|gb|EED31417.1| GreA/GreB family elongation factor [gamma proteobacterium NOR5-3]
          Length = 154

 Score =  143 bits (360), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 71/153 (46%), Positives = 109/153 (71%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T++G   ++ EL   ++ +RPRI +AI+EAR +GDL ENAEY AA+E Q+  EGR+ ++
Sbjct: 1   MTAQGEKALRAELEQLKKVDRPRISQAIAEAREHGDLKENAEYHAAREQQSFAEGRIMDI 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ A+VID++++    ++ FG TV L+   + +   Y+IVGD EAD +  L+S++SP
Sbjct: 61  EGKLSHAQVIDVTSIPCTGKVIFGVTVDLINVENDESVVYRIVGDDEADARQNLISVNSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IARALIGKE GD++ V APGG++ YEI QV  +
Sbjct: 121 IARALIGKEEGDVVVVRAPGGDREYEIDQVRHL 153


>gi|227877749|ref|ZP_03995783.1| transcriptional elongation factor [Lactobacillus crispatus JV-V01]
 gi|256843602|ref|ZP_05549090.1| transcription elongation factor [Lactobacillus crispatus 125-2-CHN]
 gi|256850078|ref|ZP_05555508.1| transcriptional elongation factor [Lactobacillus crispatus
           MV-1A-US]
 gi|262047366|ref|ZP_06020323.1| transcriptional elongation factor [Lactobacillus crispatus
           MV-3A-US]
 gi|295693346|ref|YP_003601956.1| transcription elongation factor [Lactobacillus crispatus ST1]
 gi|227862652|gb|EEJ70137.1| transcriptional elongation factor [Lactobacillus crispatus JV-V01]
 gi|256615022|gb|EEU20223.1| transcription elongation factor [Lactobacillus crispatus 125-2-CHN]
 gi|256713050|gb|EEU28041.1| transcriptional elongation factor [Lactobacillus crispatus
           MV-1A-US]
 gi|260572340|gb|EEX28903.1| transcriptional elongation factor [Lactobacillus crispatus
           MV-3A-US]
 gi|295031452|emb|CBL50931.1| Transcription elongation factor [Lactobacillus crispatus ST1]
          Length = 158

 Score =  143 bits (360), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 104/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T++G +K+Q EL+  +  +RP +I+ I  AR++GDLSEN+EY AAK+ Q+  
Sbjct: 1   MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E ++  A+V+D  ++  + ++ G T++  E  + D + Y IVG  E+D  +G 
Sbjct: 61  EDRIAQVEEMLKYAQVVDAESVDPNEVSVGKTITYTEVGTDDPETYTIVGSDESDPLNGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK+ G+ +S+  PGG+    I +V 
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGKFDVVINEVK 157


>gi|89095224|ref|ZP_01168147.1| transcription elongation factor greA (transcript cleavage factor)
           [Oceanospirillum sp. MED92]
 gi|89080521|gb|EAR59770.1| transcription elongation factor greA (transcript cleavage factor)
           [Oceanospirillum sp. MED92]
          Length = 153

 Score =  143 bits (360), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 68/153 (44%), Positives = 105/153 (68%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G   +++EL   +  +RPR+I  I+EAR +GDL ENAEY AA+E Q   EGR+ EL
Sbjct: 1   MTAAGEKALREELDQLKTVDRPRVIADIAEAREHGDLKENAEYHAAREQQGFIEGRIQEL 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++  +VID++++    ++ FG TV+++  ++ + K YQIVGD EAD++   +S++SP
Sbjct: 61  EGKLSNCQVIDVTSIPHTGKVIFGTTVTIINLDTDETKTYQIVGDDEADIKVNKISVNSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IAR L+GKE GDI+++  PGG   YEI +V  I
Sbjct: 121 IARGLVGKEEGDIVNIQTPGGAAEYEIDEVAHI 153


>gi|295688363|ref|YP_003592056.1| GreA/Greb family elongation factor [Caulobacter segnis ATCC 21756]
 gi|295430266|gb|ADG09438.1| GreA/GreB family elongation factor [Caulobacter segnis ATCC 21756]
          Length = 152

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 81/152 (53%), Positives = 120/152 (78%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G+  + +EL+  +  ERP +I AI+EAR++GDLSENAEY AAKE Q   EG++AE+
Sbjct: 1   MTVGGYQTLDEELKRLKTIERPSVIAAIAEARSHGDLSENAEYHAAKERQGWIEGQIAEI 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E+ I RA+VID+S +SG ++ FGATVS++++++ ++  YQIVGD EADV+SG +S+SSP+
Sbjct: 61  EDKIARAQVIDVSKLSGKQVKFGATVSVIDEDTEEEARYQIVGDHEADVKSGRISLSSPL 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +RA+IGKE+G+++ VN PGG K YEI +V W+
Sbjct: 121 SRAMIGKEVGEVVEVNTPGGVKAYEITKVEWL 152


>gi|297538751|ref|YP_003674520.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
 gi|297258098|gb|ADI29943.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
          Length = 168

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K  +T +G   I+ E     + ERP ++K +S A   GD SEN +Y   K      + R
Sbjct: 9   EKNYITPEGHAAIEAEFTELLKVERPALVKVVSWAAGNGDRSENGDYIYGKRRLRQIDSR 68

Query: 63  MAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           +  L   +  A ++D +   G +++ FGA V+L       +  Y+IVG  E     G +S
Sbjct: 69  LRFLMQRMDLAVIVDPAAQQGLEKVFFGAWVTLFSLKDDTEHTYRIVGKDELQPSLGYIS 128

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SP+ARAL+GK++GDI+ V+ P GE+ YEI+ V +
Sbjct: 129 WVSPLARALLGKQIGDIVKVSVPAGEEEYEIIDVQY 164


>gi|255321856|ref|ZP_05363006.1| transcription elongation factor GreA [Campylobacter showae RM3277]
 gi|255300960|gb|EET80227.1| transcription elongation factor GreA [Campylobacter showae RM3277]
          Length = 160

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 106/157 (67%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +  P+T  G++KI  EL+  +  ERP I++ I  AR++GDL ENAEY AA+E Q   E
Sbjct: 1   MTE--PMTLFGYEKITNELKNLKTVERPNIVEEIDIARSHGDLKENAEYHAAREKQAFIE 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+AEL +II+RA+VID +    D++ FG+TV +++  +  +K Y +VG  E++++ GL+
Sbjct: 59  SRIAELSDIISRAKVIDPAEYEHDKVKFGSTVVIMDVETELEKTYTLVGTPESNLERGLI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+A+ LIGK  GD +++N P G    EI+ V +
Sbjct: 119 SINSPLAKQLIGKSEGDEVALNLPNGRSDVEIVSVSY 155


>gi|284799703|ref|ZP_05984625.2| transcription elongation factor GreA [Neisseria subflava NJ9703]
 gi|284797264|gb|EFC52611.1| transcription elongation factor GreA [Neisseria subflava NJ9703]
          Length = 162

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++QEL+  +   RP +I+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 5   MQKIPLTVRGAELLKQELQHLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 64

Query: 62  RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A +I+ + +    +I FG TV+L +  + ++  YQIVG+ EAD++   +
Sbjct: 65  RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKEHKI 124

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + SPIARALIGKE GD+  V APGG + Y+I+ V +I
Sbjct: 125 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 162


>gi|254491388|ref|ZP_05104567.1| transcription elongation factor GreA subfamily [Methylophaga
           thiooxidans DMS010]
 gi|224462866|gb|EEF79136.1| transcription elongation factor GreA subfamily [Methylophaga
           thiooxydans DMS010]
          Length = 158

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 78/154 (50%), Positives = 112/154 (72%), Gaps = 1/154 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           +P+TS+G + ++ EL+  +   RP ++ AISEARA+GDL ENAEY AAKE Q+  EGR+ 
Sbjct: 3   VPITSRGAEALKHELKELKSVARPTVVAAISEARAHGDLKENAEYHAAKEQQSFIEGRIQ 62

Query: 65  ELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           ELE +++ A+VID  S     R+ FG TVSL+  ++ ++K YQIVGD E+D++   +S+S
Sbjct: 63  ELEGVLSNAQVIDPASLPQDGRVVFGVTVSLLNIDTDEEKAYQIVGDYESDIKLNRISVS 122

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARALIGKE+ DI +V APGG   YEI+++ +
Sbjct: 123 SPIARALIGKEIDDIATVQAPGGNIEYEIIEISY 156


>gi|229111852|ref|ZP_04241398.1| Transcription elongation factor greA [Bacillus cereus Rock1-15]
 gi|228671608|gb|EEL26906.1| Transcription elongation factor greA [Bacillus cereus Rock1-15]
          Length = 189

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++ EL   +   R  +++ I  AR++GDLSEN+EY AAK+ Q  
Sbjct: 18  MSTEKTYPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAF 77

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN+I  A +I  +      +  G TV+  E  +GD++ Y IVG  EAD   G
Sbjct: 78  VEGRITQLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEG 137

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 138 RISNDSPIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 175


>gi|71082811|ref|YP_265530.1| transcription elongation factor [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91762766|ref|ZP_01264731.1| Transcription elongation factor [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|123775546|sp|Q4FPG2|GREA_PELUB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|71061924|gb|AAZ20927.1| Transcription elongation factor [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91718568|gb|EAS85218.1| Transcription elongation factor [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 158

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK P+T+ G + +++EL + ++++RP+I+ AISEAR++GDL ENAEY AAKE Q+ NEG
Sbjct: 1   MDKEPITADGLESLKEELIFLKEKKRPQIVAAISEARSHGDLKENAEYHAAKEEQSHNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+ +II RA VID++ MS D ++ FG+TV L   ++G+K  Y+IVG  EAD+Q  L+
Sbjct: 61  RITEINDIIARANVIDVTKMSNDGKVIFGSTVDLENLDTGEKITYKIVGKDEADLQKKLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
              SPI R LIGK   D++ +  P G K +EI  V ++
Sbjct: 121 FFQSPIGRGLIGKNKNDLVEIKTPAGVKNFEIKDVKYV 158


>gi|226327577|ref|ZP_03803095.1| hypothetical protein PROPEN_01448 [Proteus penneri ATCC 35198]
 gi|225204103|gb|EEG86457.1| hypothetical protein PROPEN_01448 [Proteus penneri ATCC 35198]
          Length = 159

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + +EL++  +EERPR+ +++SEA A GD SENAEY   K+     +
Sbjct: 1   MAKSNYITRDGWYALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V+L + +   K  +++VG  E D     +
Sbjct: 61  RRVRFLSKRLDELKIVDPDPRQEGKVYFGAWVTLEDDDENVK-TFRLVGPDEFDPAKQWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D ISV  PGGE  Y +L + +
Sbjct: 120 SIDSPVARALIGKQVDDEISVQTPGGEVNYCVLSIKY 156


>gi|114331547|ref|YP_747769.1| transcription elongation factor GreB [Nitrosomonas eutropha C91]
 gi|114308561|gb|ABI59804.1| transcription elongation factor GreB [Nitrosomonas eutropha C91]
          Length = 182

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 87/155 (56%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ E     + ERP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 26  KNYITPGGYQRLKDEFDQLWKVERPELVKIVSWAASNGDRSENGDYIYGKRRLREIDRRL 85

Query: 64  AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AE+ID +     D++ FGATV++ +   G ++ Y IVG  EA+   G +S 
Sbjct: 86  RFLSRRMDHAEIIDPAQRGECDQVFFGATVTVYDAQ-GKEQTYSIVGMDEAEPSCGRISW 144

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+    GD++S+  PGG +  E++++ +
Sbjct: 145 ISPLARALLKAREGDVVSLQTPGGLEELEVIKIRY 179


>gi|317484639|ref|ZP_07943542.1| transcription elongation factor GreA [Bilophila wadsworthia 3_1_6]
 gi|316924113|gb|EFV45296.1| transcription elongation factor GreA [Bilophila wadsworthia 3_1_6]
          Length = 160

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 106/156 (67%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP++ +GF  ++QEL   ++ ERP +I+AI EAR  GDL ENA Y AA+E Q + E 
Sbjct: 1   MSSIPISKEGFQALEQELDRLKK-ERPHVIQAIKEAREEGDLKENAGYDAARERQGMLEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  +E+ +    VID+ST+S ++  FGATV++ + ++G+++ + ++G  EAD   G +S
Sbjct: 60  RIKYIESRMALFNVIDLSTLSSEKAIFGATVTVEDADTGEEREFTLLGPDEADYAKGTIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+  AL+GKE+GD I+VNAP G   YEI+ + +
Sbjct: 120 IQSPVGVALLGKEVGDEITVNAPRGRINYEIIDIQF 155


>gi|262278055|ref|ZP_06055840.1| transcription elongation factor [Acinetobacter calcoaceticus
           RUH2202]
 gi|262258406|gb|EEY77139.1| transcription elongation factor [Acinetobacter calcoaceticus
           RUH2202]
          Length = 158

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 103/158 (65%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +++EL+  +  ERPRII+AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQRYPMTPEGKIALEKELQHLKSVERPRIIQAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +   + ID+ T     R+ FG TV++   ++ ++K Y+IVGD EAD +   +
Sbjct: 61  RIQDIEGKLGAVQEIDVKTLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+ K  GD + +  P GE  YEI+ V ++
Sbjct: 121 SVNSPIARGLLSKSEGDEVKIVTPQGEVEYEIVSVEYL 158


>gi|117619726|ref|YP_857805.1| transcription elongation factor GreA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561133|gb|ABK38081.1| transcription elongation factor GreA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 158

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 119/158 (75%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++  P+T +G +K+++EL + + E RP+II+AI++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNHTPMTVRGAEKLREELEYLKTELRPQIIEAIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++ A+VIDI+ M+ + R+ FGATV+L++  + ++  Y+IVGD EAD++  ++
Sbjct: 61  RIQEIESKLSNAQVIDITKMTNNGRVIFGATVTLLKSETEEEVVYRIVGDDEADIKQNMI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIGKE+ D+  V  P G+  YEIL+V ++
Sbjct: 121 SVNSPIARALIGKEVDDVAIVKTPAGDVEYEILEVAYL 158


>gi|220904317|ref|YP_002479629.1| transcription elongation factor GreA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|254799558|sp|B8IZM4|GREA_DESDA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|219868616|gb|ACL48951.1| transcription elongation factor GreA [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 162

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP++ +G+  +++EL   +  ERP II+AI EAR  GDL ENA Y AA+E Q + E 
Sbjct: 1   MTSIPISVQGYKALEEELARLKS-ERPEIIQAIKEAREEGDLRENAGYDAARERQGMAEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  +E+ +   +VID+ T+SGD++ FGATV L + +SG+ K Y I+G  EAD   G +S
Sbjct: 60  RIKYIESRMALYQVIDLDTLSGDKVIFGATVDLEDVDSGEAKTYTILGPDEADPSKGSIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SP+ +AL+G+E GD +SV  P G  TYEI+ V +
Sbjct: 120 FLSPVGQALLGREEGDEVSVEIPRGRVTYEIIGVSF 155


>gi|302037858|ref|YP_003798180.1| transcription elongation factor GreA [Candidatus Nitrospira
           defluvii]
 gi|300605922|emb|CBK42255.1| Transcription elongation factor GreA [Candidatus Nitrospira
           defluvii]
          Length = 158

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/152 (45%), Positives = 104/152 (68%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T KG++ ++ EL    + ERPR+I+AI+EARA+GDLSENAEY AAKE Q   E R+AE
Sbjct: 4   PITRKGYEALKAELDRLHKVERPRVIEAIAEARAHGDLSENAEYDAAKERQGFIEARLAE 63

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  +    +IDI+  + + + FGATV L+E+ +  KK Y +VG  EAD++   +S+ SP
Sbjct: 64  LKGKLADCRIIDIAGRTSETVVFGATVVLIEQEAQAKKQYTLVGQDEADLKFSRISVQSP 123

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + RALIGK +GD++ V  P     YE++++ +
Sbjct: 124 VGRALIGKRVGDMVEVTTPAKIVEYEVMEIRF 155


>gi|88812984|ref|ZP_01128227.1| transcription elongation factor GreA [Nitrococcus mobilis Nb-231]
 gi|88789762|gb|EAR20886.1| transcription elongation factor GreA [Nitrococcus mobilis Nb-231]
          Length = 158

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 81/157 (51%), Positives = 117/157 (74%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +++EL   +  ERP+I++AI+EARA+GDL ENAEY AA+E Q+L EG
Sbjct: 1   MSRRPLTVRGAQMLKEELARLKTRERPKIVRAIAEARAHGDLKENAEYHAAREQQSLLEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE  +  A++ID+ S  +  ++ FG TV L E++SGD+  YQIVG+ EAD++ G V
Sbjct: 61  RIAELEEKLANAQIIDVRSLSADGKVVFGVTVVLAEESSGDEMTYQIVGEDEADIKHGKV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SPIARALIGKE G+I+ V AP G ++YEI++V +
Sbjct: 121 SIHSPIARALIGKEEGEIVEVRAPAGNRSYEIVEVRY 157


>gi|59711083|ref|YP_203859.1| transcription elongation factor GreA [Vibrio fischeri ES114]
 gi|197336313|ref|YP_002155232.1| transcription elongation factor GreA [Vibrio fischeri MJ11]
 gi|59479184|gb|AAW84971.1| transcription elongation factor [Vibrio fischeri ES114]
 gi|197317803|gb|ACH67250.1| transcription elongation factor GreA [Vibrio fischeri MJ11]
          Length = 157

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 107/158 (67%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK+P+T +G   ++ EL    +  RP I KAI EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MDKVPMTVRGEKLLRDELEVLLK-RRPLISKAIGEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M+   ++ FG TV+L++ N+ ++  YQIV D EA+++ G +
Sbjct: 60  QIRDIEYKLSVAQVIDVTKMTNTGKVIFGTTVTLIDVNTDEEVKYQIVADDEANIKEGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK  GD +++  PGG K +EI  V +I
Sbjct: 120 SVNSPIARGLIGKMEGDEVNIQTPGGTKEFEIDAVDYI 157


>gi|15604691|ref|NP_221209.1| transcription elongation factor GreA [Rickettsia prowazekii str.
           Madrid E]
 gi|121608|sp|P27640|GREA_RICPR RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|46346|emb|CAA78107.1| GreA [Rickettsia prowazekii]
 gi|434678|gb|AAB81401.1| GreA [Rickettsia prowazekii]
 gi|3861386|emb|CAA15285.1| TRANSCRIPTION ELONGATION FACTOR GREA (greA) [Rickettsia prowazekii]
 gi|292572525|gb|ADE30440.1| Transcription elongation factor GreA [Rickettsia prowazekii Rp22]
          Length = 162

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/157 (50%), Positives = 114/157 (72%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K P+T+KGF K++ EL+  +  ER +I + I+EAR +GDLSENAEY+AA+E Q   E
Sbjct: 1   MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAE+IDI  +SGD I FGATV+L++ ++ ++  Y IVG+ EAD+    V
Sbjct: 61  GRIKELEDMTARAEIIDICKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITKKRV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIA+ALIGK +GD + V  P G K+YE++ V +
Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGLKSYEVVTVEY 157


>gi|21231292|ref|NP_637209.1| transcription elongation factor GreA [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768656|ref|YP_243418.1| transcription elongation factor GreA [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188991526|ref|YP_001903536.1| transcription elongation factor GreA [Xanthomonas campestris pv.
           campestris str. B100]
 gi|25453015|sp|Q9L4D3|GREA_XANCP RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|7228158|emb|CAB77041.1| putative transcriptional elongation factor [Xanthomonas campestris]
 gi|21112945|gb|AAM41133.1| putative transcriptional elongation factor [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66573988|gb|AAY49398.1| putative transcriptional elongation factor [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|167733286|emb|CAP51485.1| transcriptional elongation factor [Xanthomonas campestris pv.
           campestris]
          Length = 158

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/154 (50%), Positives = 117/154 (75%), Gaps = 1/154 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+TSKG  ++++EL   +  +RP +I AI+EARA+GDL ENAEY AA+E Q+  EGR+ +
Sbjct: 4   PMTSKGAQRLREELDHLKSVKRPAVITAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63

Query: 66  LENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           LE  ++ AE+IDI+   +G +I FGATV+L +  + ++K YQIVGD EAD++ GL++ISS
Sbjct: 64  LEGELSHAEIIDITKLAAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGLIAISS 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           P+ARALIGK  GD ++++AP G++ YE++ V ++
Sbjct: 124 PLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 157


>gi|251771869|gb|EES52443.1| transcription elongation factor GreA [Leptospirillum
           ferrodiazotrophum]
          Length = 158

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 108/156 (69%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G+ K+Q+EL   ++ +R + I+ I+EARA+GDLSENAEY AAKE Q+  EG
Sbjct: 1   MQQTPMTKEGYAKLQEELERLKKVDRTKNIQDIAEARAHGDLSENAEYHAAKEKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE  ++ A V+  +    DR+ FGATV+L   ++G++K Y +VG +E D++ G +S
Sbjct: 61  RIKELEAKLSTAIVVSSAHQDRDRVTFGATVTLKNTSTGEEKTYTLVGQEEVDLKRGRLS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ++SP+ +AL+G  +G+ + +  P GE  YE+ ++ +
Sbjct: 121 VASPVGKALVGHRVGENVLIRVPAGEIEYEVCRIDY 156


>gi|171059502|ref|YP_001791851.1| transcription elongation factor GreA [Leptothrix cholodnii SP-6]
 gi|170776947|gb|ACB35086.1| transcription elongation factor GreA [Leptothrix cholodnii SP-6]
          Length = 158

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 83/158 (52%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G + +++EL+  +  ERP +I AI+EARA GDLSENAEY+AAK+ Q   EG
Sbjct: 1   MATIPLTKRGAELLKEELQRLKTIERPWVINAIAEARAQGDLSENAEYEAAKDKQGFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A+VID +   +G R+ FGATV L E+ SGD   YQIVG+ EAD++ GLV
Sbjct: 61  RILDVEGKLAIAQVIDPAVLDAGGRVVFGATVDLEEEESGDAVTYQIVGEDEADLKKGLV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIARALIGKE GD+  V APGG K YE+++V ++
Sbjct: 121 SVGSPIARALIGKEAGDVAEVQAPGGVKRYEVVEVRYV 158


>gi|21242607|ref|NP_642189.1| transcription elongation factor GreA [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|78047466|ref|YP_363641.1| transcription elongation factor GreA [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|294624591|ref|ZP_06703266.1| transcription elongation factor GreA [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666706|ref|ZP_06731942.1| transcription elongation factor GreA [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|25452987|sp|Q8PLD9|GREA_XANAC RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|21108069|gb|AAM36725.1| transcriptional elongation factor [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|78035896|emb|CAJ23587.1| transcriptional elongation factor [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|292601126|gb|EFF45188.1| transcription elongation factor GreA [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603531|gb|EFF46946.1| transcription elongation factor GreA [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 158

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/154 (50%), Positives = 118/154 (76%), Gaps = 1/154 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+TSKG  ++++EL   +  +RP +I AI+EARA+GDL ENAEY AA+E Q+  EGR+ +
Sbjct: 4   PMTSKGAQRLREELEHLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63

Query: 66  LENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           LE+ ++ AE+IDI+   +G +I FGATV+L +  + ++K YQIVGD EAD++ GL++ISS
Sbjct: 64  LESELSHAEIIDITKLSAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISS 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           P+ARALIGK  GD ++++AP G++ YE++ V ++
Sbjct: 124 PLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 157


>gi|241759232|ref|ZP_04757338.1| transcription elongation factor GreA [Neisseria flavescens SK114]
 gi|241320368|gb|EER56665.1| transcription elongation factor GreA [Neisseria flavescens SK114]
          Length = 158

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++QEL+  +   RP +I+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 1   MQKIPLTVRGAELLKQELQHLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A +I+ + +    +I FG TV+L +  + ++  YQIVG+ EAD++   +
Sbjct: 61  RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKERKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + SPIARALIGKE GD+  V APGG + Y+I+ V +I
Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 158


>gi|170727907|ref|YP_001761933.1| transcription elongation factor GreA [Shewanella woodyi ATCC 51908]
 gi|169813254|gb|ACA87838.1| transcription elongation factor GreA [Shewanella woodyi ATCC 51908]
          Length = 153

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/153 (45%), Positives = 106/153 (69%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G D++++EL + + E+RP+I +AI EAR  GDL ENAEY AA+E Q L E R+ +L
Sbjct: 1   MTIVGADQLRKELDYLKFEKRPKIAEAIGEARELGDLKENAEYHAAREEQGLCEARVRDL 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ A++ID++ M    RI FG TV+++  ++  +  Y+IVGD EA+++  L+S+SSP
Sbjct: 61  EGKLSNAQIIDVTKMQNTGRIIFGTTVTILNIDTDVETTYRIVGDDEANIKENLLSVSSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IAR LIGK + D ++++ PGG   YEI  V +I
Sbjct: 121 IARGLIGKNVDDEVTISTPGGMTEYEITAVEYI 153


>gi|307579424|gb|ADN63393.1| transcription elongation factor GreA [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 154

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 78/153 (50%), Positives = 109/153 (71%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T KG  +++ EL   +  +RP II AI+EARA+GDL ENAEY AA+E Q+  EGR+ +L
Sbjct: 1   MTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60

Query: 67  ENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ AEVID     +G +I FGATV+L +  + ++  YQIVGD EAD++ GLV+ISSP
Sbjct: 61  EGELSHAEVIDVAKLNAGTKIVFGATVTLADLGTDEESRYQIVGDLEADIKQGLVAISSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 121 VARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 153


>gi|313681690|ref|YP_004059428.1| transcription elongation factor grea [Sulfuricurvum kujiense DSM
           16994]
 gi|313154550|gb|ADR33228.1| transcription elongation factor GreA [Sulfuricurvum kujiense DSM
           16994]
          Length = 165

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 98/157 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K P+T  GF ++  EL   +  + P +   I  A+ YGDL EN+EY AA+E Q    
Sbjct: 1   MEQKEPMTKYGFQRLSDELNTLKNIDLPAVNVEIDRAKEYGDLKENSEYHAAREKQAFIG 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+AEL  +I+RA+++D S +   R++FG+TV L +  S ++  Y IVG  E++   GL+
Sbjct: 61  SRIAELGEVISRAQIVDPSELEHARVSFGSTVVLCDLESDEEVTYTIVGGCESNPDRGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S +SP+A+ L+G++ GD ++   PGG K +E+L+V +
Sbjct: 121 SFNSPLAKQLLGRQEGDELNAKLPGGTKNFEVLEVKY 157


>gi|238854479|ref|ZP_04644818.1| transcription elongation factor [Lactobacillus jensenii 269-3]
 gi|260665473|ref|ZP_05866320.1| transcription elongation factor GreB [Lactobacillus jensenii
           SJ-7A-US]
 gi|282934549|ref|ZP_06339801.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1]
 gi|238832906|gb|EEQ25204.1| transcription elongation factor [Lactobacillus jensenii 269-3]
 gi|260560741|gb|EEX26718.1| transcription elongation factor GreB [Lactobacillus jensenii
           SJ-7A-US]
 gi|281301387|gb|EFA93679.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1]
          Length = 158

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  K  P+T+ G +K++ EL+  +  +RP +I+ I  AR+YGDLSEN+EY AAK+ Q+  
Sbjct: 1   MPQKTYPMTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E ++  A+VID  ++  + ++ G TV+  E    D + Y IVG  E+D  +G 
Sbjct: 61  EQRIAQVEQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK  GD +S+N PGG     I  V 
Sbjct: 121 ISNDSPIAQALLGKHKGDTVSINTPGGSFDVVINDVK 157


>gi|323466134|gb|ADX69821.1| Transcription elongation factor [Lactobacillus helveticus H10]
          Length = 158

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 103/157 (65%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T++G +K+Q EL+  +  +RP +I+ I  AR++GDLSEN+EY AAK+ Q+  
Sbjct: 1   MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E+++  A+V+D  ++  + ++ G TV+  E  + D + Y IVG  E+D  +G 
Sbjct: 61  EDRIAQVEDMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDAETYTIVGSDESDPLNGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK+ G+ +S+  PG +    I  V 
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGSQFDVVINNVE 157


>gi|189499862|ref|YP_001959332.1| transcription elongation factor GreA [Chlorobium phaeobacteroides
           BS1]
 gi|238692290|sp|B3EPH3|GREA_CHLPB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|189495303|gb|ACE03851.1| transcription elongation factor GreA [Chlorobium phaeobacteroides
           BS1]
          Length = 160

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 99/157 (63%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D++ +T  G+++++ EL   + + R  +++ I+EARA+GDLSENAEY AA+E Q   E
Sbjct: 1   MSDRVYLTKDGYNRLRDELTVLKSDVRKEVLEKIAEARAHGDLSENAEYDAAREQQRQLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK--NYQIVGDQEADVQSG 118
            ++ +LE+ +TRA ++D   +  DR+    +V L   ++  ++   Y +V   EAD   G
Sbjct: 61  NKIGDLESKLTRATILDPKQVKTDRVYILTSVKLKNLDAQKEEIIEYTLVSSDEADTDLG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S+ SP+ ++L+GK +GD + +  P GE  YEIL++
Sbjct: 121 KISVRSPVGKSLLGKAVGDKVQIQVPKGELHYEILEI 157


>gi|116749520|ref|YP_846207.1| transcription elongation factor GreA [Syntrophobacter fumaroxidans
           MPOB]
 gi|229485909|sp|A0LK20|GREA_SYNFM RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|116698584|gb|ABK17772.1| transcription elongation factor GreA [Syntrophobacter fumaroxidans
           MPOB]
          Length = 156

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/155 (43%), Positives = 109/155 (70%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + ++P+T +GF++++ EL+  Q++ERP +I+AI EAR++GD+SENAEY+AAKE Q + EG
Sbjct: 1   MPRVPITKEGFERLKIELQRLQRDERPMVIRAIEEARSHGDISENAEYEAAKEKQAMIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L   +   E+++ S     R  FG+TV + +  +G+  +Y++VG  EADVQSG +S
Sbjct: 61  RIQDLCQKMGECEIVEPSDNDNGRAIFGSTVVVEDTETGEVTSYRLVGPYEADVQSGTIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           + SP+ +ALIGKE G+ I V  P G +  E+L++ 
Sbjct: 121 VVSPLGKALIGKEEGEEIRVQTPKGVRNIEVLEIR 155


>gi|154175152|ref|YP_001408890.1| transcription elongation factor GreA [Campylobacter curvus 525.92]
 gi|112803753|gb|EAU01097.1| biopolymer transport ExbB protein [Campylobacter curvus 525.92]
          Length = 162

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 106/157 (67%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +  P+T  G++KI+ EL+  +Q +RP+I+  I  AR++GDL ENAEY AAKE Q   +
Sbjct: 1   MNE--PMTIYGYEKIEAELKDLRQVQRPQIVIEIDIARSHGDLKENAEYHAAKEKQAFID 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+AEL  ++  AEVID S+   DR+ FG++V++++  +  +  Y IVG  E+++  GL+
Sbjct: 59  TRIAELSTLLANAEVIDPSSYEHDRVRFGSSVTIMDVETEIEHTYTIVGISESNLDRGLI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+AR L+GK  GD +++N P G    E+++V +
Sbjct: 119 SINSPLARQLLGKAEGDEVALNLPNGRSDVEVVEVCY 155


>gi|318607818|emb|CBY29316.1| transcription elongation factor GreB [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 165

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + +EL +  +EERP + +A+SEA A GD SENAEY   K+     +
Sbjct: 1   MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V +  ++   +  +++VG  E D     +
Sbjct: 61  RRVRFLTKRLEVLKIVDPDPRQEGKVYFGAWVQVENESGEQRI-FRLVGPDEFDPAKKWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D ++V  P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEVTYWILEIRY 156


>gi|220930922|ref|YP_002507830.1| transcription elongation factor GreA [Halothermothrix orenii H 168]
 gi|219992232|gb|ACL68835.1| transcription elongation factor GreA [Halothermothrix orenii H 168]
          Length = 161

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 97/156 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +++ +T +G++K+++EL +    +R ++ K I  AR +GD+ EN+EY  AK  Q   E
Sbjct: 1   MANEVLLTQEGYEKLEKELDYLVNVKRRQVAKRIKVAREFGDIGENSEYDDAKNEQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ E+EN++  A +I    ++GD +  G TV L ++++ +  +Y IVG  EAD  +  +
Sbjct: 61  GRIKEIENMLRNARIIKDEEVTGDTVNLGTTVKLKDRSTDEVFSYTIVGSAEADPLNFKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPI +A+IG ++GD++ V  P G   YEIL + 
Sbjct: 121 SNESPIGKAIIGHKIGDVVKVEVPSGIMEYEILAIE 156


>gi|77360173|ref|YP_339748.1| transcription elongation factor greA [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875084|emb|CAI86305.1| transcription elongation factor greA [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 158

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 102/158 (64%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G D +++EL   +   RP+I+  I+ AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQTIPMTVRGADLLRKELTELKTVTRPKIVSDIAVAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++  ++ID++ M    ++ FG TV++V   +  +  YQIVGD EA ++   +
Sbjct: 61  RIQEIEAKLSNVQIIDVTKMPNTGKVIFGTTVTIVNVETDVEVKYQIVGDDEASIKDNRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK+  D +++  P G   YEI++V +I
Sbjct: 121 SVNSPIARGLIGKQADDAVNIETPKGTVEYEIIEVEYI 158


>gi|319639242|ref|ZP_07993993.1| transcription elongation factor greA [Neisseria mucosa C102]
 gi|317399426|gb|EFV80096.1| transcription elongation factor greA [Neisseria mucosa C102]
          Length = 158

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/158 (48%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++QEL+  +   RP II+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 1   MQKIPLTVRGAELLKQELQHLKSVARPEIIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A +I+ + +    +I FG TV+L +  + ++  YQIVG+ EAD++   +
Sbjct: 61  RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKERKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + SPIARALIGKE GD+  V APGG + Y+I+ V +I
Sbjct: 121 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 158


>gi|74316538|ref|YP_314278.1| transcription elongation factor GreB [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056033|gb|AAZ96473.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC
           25259]
          Length = 187

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 86/156 (55%), Gaps = 2/156 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ ++  E     + ERP++++ IS A + GD SEN +Y   K+     + R+
Sbjct: 30  KNYMTPAGYARLDAEFNQLWKVERPKLVETISWAASNGDRSENGDYIYGKKRLREVDRRI 89

Query: 64  AELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D  +  + D++ FGATV++ + +   +  Y IVG  EAD   G ++ 
Sbjct: 90  RFLSKRLEHAEVVDPATRAATDQVFFGATVTVADADGS-ESTYAIVGLDEADASRGRIAW 148

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            SP+ARAL+    GD + V  P G +  EI++V ++
Sbjct: 149 MSPMARALLKAREGDTVVVQTPDGRREVEIIEVRYV 184


>gi|58337782|ref|YP_194367.1| transcriptional elongation factor [Lactobacillus acidophilus NCFM]
 gi|227904432|ref|ZP_04022237.1| transcriptional elongation factor [Lactobacillus acidophilus ATCC
           4796]
 gi|58255099|gb|AAV43336.1| transcriptional elongation factor [Lactobacillus acidophilus NCFM]
 gi|227867807|gb|EEJ75228.1| transcriptional elongation factor [Lactobacillus acidophilus ATCC
           4796]
          Length = 158

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 104/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T++G +K++ EL+  +  +RP +I+ I  AR++GDLSEN+EY AAK+ Q+  
Sbjct: 1   MPEKSYPMTAEGKEKLEAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E ++  A+V+D  ++  + ++ G T++  E  + D + Y IVG  E+D  +G 
Sbjct: 61  EDRIAQVEEMLKYAQVVDAESVDPNEVSVGKTITYTEVGTDDPETYTIVGSDESDPLNGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK+ G+ +S+  PGG+    I +V 
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGGQFDVVINKVE 157


>gi|319787362|ref|YP_004146837.1| transcription elongation factor GreA [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465874|gb|ADV27606.1| transcription elongation factor GreA [Pseudoxanthomonas suwonensis
           11-1]
          Length = 154

 Score =  142 bits (358), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/153 (47%), Positives = 113/153 (73%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T KG  ++++EL   +  +RP +I AI+EAR +GDL ENAEY AA+E Q   EGR+ +L
Sbjct: 1   MTLKGAQRLREELDHLKTVKRPEVIAAIAEARGHGDLKENAEYHAAREQQGFIEGRIKQL 60

Query: 67  ENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E+ ++ A++ID++   +G ++ FGATV+L +  + ++  YQIVGD EAD++ GL++ISSP
Sbjct: 61  ESELSHADLIDVTKLNAGSKVVFGATVTLADVETDEEVRYQIVGDLEADIKQGLIAISSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +ARALIGKE GD I ++AP G++ YEI+ V ++
Sbjct: 121 VARALIGKEEGDAIVIDAPAGQREYEIVSVEYL 153


>gi|225075463|ref|ZP_03718662.1| hypothetical protein NEIFLAOT_00468 [Neisseria flavescens
           NRL30031/H210]
 gi|224953281|gb|EEG34490.1| hypothetical protein NEIFLAOT_00468 [Neisseria flavescens
           NRL30031/H210]
          Length = 162

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/158 (47%), Positives = 113/158 (71%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T +G + ++QEL+  +   RP +I+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 5   MQKIPLTVRGAELLKQELQHLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 64

Query: 62  RMAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE+ ++ A +I+ + +    +I FG TV+L +  + ++  YQIVG+ EAD++   +
Sbjct: 65  RIAELEHKLSMAHIINPAEIHAEGKIVFGTTVTLEDLETEEQVTYQIVGEDEADIKERKI 124

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + SPIARALIGKE GD+  V APGG + Y+I+ V +I
Sbjct: 125 YVGSPIARALIGKEEGDVAEVQAPGGVREYDIIAVQYI 162


>gi|153874961|ref|ZP_02002967.1| Prokaryotic transcription elongation factor GreA [Beggiatoa sp. PS]
 gi|152068576|gb|EDN67034.1| Prokaryotic transcription elongation factor GreA [Beggiatoa sp. PS]
          Length = 157

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 83/156 (53%), Positives = 115/156 (73%), Gaps = 1/156 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K P+T++G  K++ EL   +  ERP++I+AI+EARA GDL ENAEY AA+E Q+  EGR+
Sbjct: 2   KSPMTTQGAQKLRDELHHLKTVERPKVIQAIAEARALGDLKENAEYHAAREQQSFIEGRI 61

Query: 64  AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
            ELE     AE+IDI+ ++   ++ FGATV+L+   + ++  YQIVGD EAD+++ L+SI
Sbjct: 62  MELETKFASAEIIDITKINANGKVVFGATVNLMNVETEEEVTYQIVGDDEADIKAHLISI 121

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SSPIARALI KE G+I  V APGG+K YEIL+V +I
Sbjct: 122 SSPIARALIKKEEGEIAVVQAPGGKKEYEILEVKYI 157


>gi|20808737|ref|NP_623908.1| transcription elongation factor GreA [Thermoanaerobacter
           tengcongensis MB4]
 gi|25452988|sp|Q8R7N0|GREA_THETN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|20517379|gb|AAM25512.1| Transcription elongation factor [Thermoanaerobacter tengcongensis
           MB4]
          Length = 157

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 95/156 (60%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   + +T +G  K+++EL + +  +R  + + I +ARA+GDLSEN+EY  AK  Q   E
Sbjct: 1   MSKPVILTYEGLKKLEEELEYLKTVKRAEVAEKIKQARAFGDLSENSEYDEAKNEQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+A LE ++  A+VID   +  D ++ G TV + ++   ++  Y IVG  EAD  +  +
Sbjct: 61  GRIATLEAMLKNAKVIDEEDIKLDEVSIGCTVKVFDETYNEEVEYTIVGSAEADPMNNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPI +AL+GK++G+ ISV  P G    +IL++ 
Sbjct: 121 SDESPIGKALLGKKVGETISVEVPAGVIKLKILEIR 156


>gi|146299350|ref|YP_001193941.1| transcription elongation factor GreA [Flavobacterium johnsoniae
           UW101]
 gi|189042241|sp|A5FJJ8|GREA_FLAJO RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|146153768|gb|ABQ04622.1| transcription elongation factor GreA [Flavobacterium johnsoniae
           UW101]
          Length = 158

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 94/156 (60%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T+ G  K++ EL   +   RP+  + I++AR  GDLSENAEY AAKE Q L E
Sbjct: 1   MSKVSYYTADGLKKLKDELEHLKSVMRPKASQDIADARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+A+LE +   A +ID S +   ++   + V +  +++G +  Y +V + EAD+++G +
Sbjct: 61  MRIAKLEEVYANARLIDESQLDVSKVLVLSNVKIKNQSNGMEMKYTLVAESEADLKTGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S++SPI + L+GK +G+I  +  P G   +EIL++ 
Sbjct: 121 SVTSPIGKGLLGKSVGEIAEITVPNGTLKFEILEIT 156


>gi|123444179|ref|YP_001008149.1| transcription elongation factor GreB [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122091140|emb|CAL14023.1| transcription elongation factor [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 165

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + +EL +  +EERP + +A+SEA A GD SENAEY   K+     +
Sbjct: 1   MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V +  ++   +  +++VG  E D     +
Sbjct: 61  RRVRFLTKRLEVLKIVDPDPRQEGKVYFGAWVRVENESGEQRI-FRLVGPDEFDPAKKWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D ++V  P GE TY IL + +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILDIRY 156


>gi|295136274|ref|YP_003586950.1| transcription elongation factor GreA [Zunongwangia profunda SM-A87]
 gi|294984289|gb|ADF54754.1| transcription elongation factor GreA [Zunongwangia profunda SM-A87]
          Length = 158

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/155 (38%), Positives = 98/155 (63%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T++G  K++ EL   +  ERPR  +AI+EAR  GDLSENAEY AAKE Q L E
Sbjct: 1   MSKVSYYTAEGLKKLRDELNHLKDVERPRASEAIAEARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+LE ++  A VID S +   ++   + V +  +N+G +  Y++V   EAD+++G +
Sbjct: 61  MKIAKLEEVVANARVIDESQLDTSKVLIHSHVKIKNQNNGAEVKYKLVAQSEADLKTGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SPI + L+GK++G++  +  P G   +E+L++
Sbjct: 121 SVDSPIGKGLLGKKVGEVADIAVPSGTMKFEVLEI 155


>gi|88608560|ref|YP_506547.1| transcription elongation factor GreA [Neorickettsia sennetsu str.
           Miyayama]
 gi|123763706|sp|Q2GD99|GREA_NEOSM RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|88600729|gb|ABD46197.1| transcription elongation factor GreA [Neorickettsia sennetsu str.
           Miyayama]
          Length = 159

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 112/156 (71%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T +G+ K+Q+EL    +  +P ++ A+++AR  GDLSENAEY  A++ Q+  EG
Sbjct: 1   MRKLPITREGYCKLQEELEKLVKVVKPSVVAAVAQARELGDLSENAEYHEARKEQSFVEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++ EL+  ++ AEVID+S  +G+R+ FGA+V+L    S     YQIVG+ E+D++ G +S
Sbjct: 61  KIRELQLCLSEAEVIDVSQFTGERVKFGASVTLENMESKSVLIYQIVGNLESDIKEGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +SSPI +A++ KE+G+I+ ++ P G+KTY+IL V +
Sbjct: 121 VSSPIGKAVMNKEVGEIVEIDLPSGKKTYKILGVEF 156


>gi|82523822|emb|CAI78564.1| transcription elongation factor GreA [uncultured candidate division
           OP8 bacterium]
          Length = 156

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 109/156 (69%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++ P+T +G  K++ EL+  ++ +RP  +KAI EAR +GDL ENA+++ AK+ Q +  G
Sbjct: 1   MERYPITPEGLKKLEAELKRLREVDRPANVKAIEEARGHGDLRENADFKCAKDEQAMIVG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+A L+  I+ A VID S +SG+R+ FGA V L   ++G+   Y++VG+ EAD++ G +S
Sbjct: 61  RIAYLQGRISHAAVIDPSKLSGNRVVFGARVFLKNLDTGEPIVYRLVGEDEADIEQGSIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SP+AR LI +E+G+   +  P G K++EI+++ +
Sbjct: 121 ITSPLARGLIRREVGEQAKIAVPSGIKSFEIVKIEF 156


>gi|52081213|ref|YP_080004.1| transcription elongation factor GreA [Bacillus licheniformis ATCC
           14580]
 gi|52786594|ref|YP_092423.1| transcription elongation factor GreA [Bacillus licheniformis ATCC
           14580]
 gi|319644819|ref|ZP_07999052.1| transcription elongation factor greA [Bacillus sp. BT1B_CT2]
 gi|81384952|sp|Q65GT4|GREA_BACLD RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|52004424|gb|AAU24366.1| transcription elongation factor [Bacillus licheniformis ATCC 14580]
 gi|52349096|gb|AAU41730.1| GreA [Bacillus licheniformis ATCC 14580]
 gi|317392628|gb|EFV73422.1| transcription elongation factor greA [Bacillus sp. BT1B_CT2]
          Length = 158

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 102/157 (64%), Gaps = 2/157 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T  G  K+++EL + +  +R  +++ I  AR++GDLSEN+EY +AKE Q  
Sbjct: 1   MAQEKVFPMTETGKKKLEEELEYLKTVKRKEVVERIKVARSFGDLSENSEYDSAKEEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  L+N+I  A++I+    + D ++ G TV+  E   G++++Y IVG  EAD   G
Sbjct: 61  VEGRITTLDNMIRNAKIIEDDGANSDIVSLGKTVTFTELPDGEEESYTIVGSAEADPFEG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SPIA++L+GK++GD ++V  PGGE   +I+++
Sbjct: 121 KISNDSPIAKSLLGKQVGDEVTVQTPGGEMLVKIVKI 157


>gi|222056183|ref|YP_002538545.1| transcription elongation factor GreB [Geobacter sp. FRC-32]
 gi|221565472|gb|ACM21444.1| transcription elongation factor GreB [Geobacter sp. FRC-32]
          Length = 161

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +   +T +G  ++++E  +  + ERPR+ +A+S+A A GD SENAEY   K+     +
Sbjct: 1   MSNSNYITPEGARRLREEFEYLWKVERPRVTQAVSDAAAEGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V++       +I FGA V L  +  G++  Y+IVG  E D   G +
Sbjct: 61  RRVRFLMKRLDVLTVVEDQPERKGKIFFGAWVRLENEE-GNEVVYRIVGPDEFDPGKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+ SP+A+ALIGK+ GD + V  P G  T+ I+ V +
Sbjct: 120 SVDSPMAKALIGKQEGDEVVVRRPAGVATFTIIDVGY 156


>gi|254449181|ref|ZP_05062631.1| transcription elongation factor GreB [gamma proteobacterium
           HTCC5015]
 gi|198261227|gb|EDY85522.1| transcription elongation factor GreB [gamma proteobacterium
           HTCC5015]
          Length = 158

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 93/158 (58%), Gaps = 1/158 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  +   +T +GFD++++EL +  +EERPR+ +A+SEA A GD SENAEY   K+     
Sbjct: 1   MSRRSHYITREGFDRLEKELNFLWKEERPRVTQAVSEAAALGDRSENAEYIYGKKRLREI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           + R+  L   +   +V+  S     ++ FGA V L + +SG+   Y+IVG  E D + G 
Sbjct: 61  DRRVRFLSKRLDELQVVYPSPQQAGKVFFGAWVELEDGDSGEVVKYRIVGPDEFDPEVGA 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +S+ SP+ARAL+GK L   + V  P G + + +L V +
Sbjct: 121 ISVDSPVARALLGKALNQTVRVETPKGSRHFIVLDVSY 158


>gi|268316677|ref|YP_003290396.1| transcription elongation factor GreA [Rhodothermus marinus DSM
           4252]
 gi|262334211|gb|ACY48008.1| transcription elongation factor GreA [Rhodothermus marinus DSM
           4252]
          Length = 159

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 94/151 (62%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           + +T +   K+++EL   + +ER RI KAI+EAR +GDLSENAEY AAKE Q   E R+A
Sbjct: 7   VYLTREALQKLKEELHELKTKERARIAKAIAEARGHGDLSENAEYDAAKEAQGRLEARIA 66

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ++E  I  A ++D + +   +    + V +    +G ++ + +V  QE ++  G +S++S
Sbjct: 67  QIEQTIANARIVDENKIDTSKAYIFSKVRVKNLQTGAEQVFTLVSPQEVNLNEGKISVNS 126

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           PI + L+G+ +GD++ V  P G+   +IL++
Sbjct: 127 PIGKGLLGRSVGDVVEVKVPAGKVKLQILEI 157


>gi|317154377|ref|YP_004122425.1| transcription elongation factor GreA [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944628|gb|ADU63679.1| transcription elongation factor GreA [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 164

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 107/157 (68%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +D+IP++ +GF+KI++EL   +  +RP II+AI EAR  GDLSENA Y AA+E Q + E 
Sbjct: 1   MDRIPISKQGFEKIKKELEELKA-QRPAIIQAIKEAREEGDLSENAGYDAARERQGMLEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  + + +   +V+D+ T+ G R  FGATV + + ++ + K + ++G  +AD +SG +S
Sbjct: 60  RITYINSRMPLFDVLDLDTLGGSRAIFGATVEIEDMDTEETKRFTLLGPDDADHKSGSIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + SP+ RAL+GKE+GD   V+AP G   YEI+ + ++
Sbjct: 120 VLSPMGRALMGKEVGDEAIVDAPRGRIEYEIVSIQFL 156


>gi|212702631|ref|ZP_03310759.1| hypothetical protein DESPIG_00659 [Desulfovibrio piger ATCC 29098]
 gi|212673903|gb|EEB34386.1| hypothetical protein DESPIG_00659 [Desulfovibrio piger ATCC 29098]
          Length = 164

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/153 (41%), Positives = 103/153 (67%), Gaps = 1/153 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           IP++ +G+ ++++EL   +  ERP II+AI EAR  GDL ENA Y AA+E Q + E R+ 
Sbjct: 6   IPISKQGYKRLEEELARLKS-ERPAIIQAIKEAREEGDLRENAGYDAARERQGMAEARIK 64

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            +E+ +   +VID+  +SGD++ FG+TV + + ++ + + Y I+G  EA+   G +S  S
Sbjct: 65  YIESRMALYQVIDLDKLSGDKVIFGSTVEVEDVDTEESRTYTILGPDEAEPAKGSISFLS 124

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+ +AL+GKE+GD +SV+ P G  TYEI+ + +
Sbjct: 125 PVGQALLGKEVGDEVSVDIPRGRVTYEIVDITF 157


>gi|332877001|ref|ZP_08444754.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332685109|gb|EGJ57953.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 157

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 98/156 (62%), Gaps = 1/156 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++K+   T++G  K++ EL   +  ERPR  +AI+EAR  GDLSENAEY AAKE Q L E
Sbjct: 1   MEKVSYYTAEGMKKLRDELNQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+LE ++  A +ID S +   ++   +TV L    +  +  Y +V + EAD+++G +
Sbjct: 61  MKIAKLEKLVANARIIDESQLDVSKVLVLSTVKLKNLANNMQLTYTLVAESEADLKAGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S+SSPI + L+GK +G+I  +  P G    E+L++ 
Sbjct: 121 SVSSPIGKGLLGKSVGEIAEIKVPNGTLKMEVLEIT 156


>gi|313681806|ref|YP_004059544.1| transcription elongation factor grea [Sulfuricurvum kujiense DSM
           16994]
 gi|313154666|gb|ADR33344.1| transcription elongation factor GreA [Sulfuricurvum kujiense DSM
           16994]
          Length = 176

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 104/157 (66%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M    P++ +G+D++ +E ++ +  E+PR+ +    A   GD SENAEY AAKE     +
Sbjct: 1   MSQNEPMSPRGYDELLREFKYLKDIEKPRVNQEKQRAAELGDRSENAEYHAAKEKLRHID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L ++I +A++ID S ++  R  FGAT+++ + NS ++ +Y I G  E++ ++GL+
Sbjct: 61  KRLFYLNSMIEKAQIIDPSVLNHSRAHFGATITIADINSDEEFSYTICGTLESEPENGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+ SP+A+A++GKE GD  SV+ PGG+K+YE+  + +
Sbjct: 121 SVHSPLAKAMLGKEEGDEFSVHLPGGKKSYEVSAITY 157


>gi|163787161|ref|ZP_02181608.1| putative transcription elongation factor [Flavobacteriales
           bacterium ALC-1]
 gi|159877049|gb|EDP71106.1| putative transcription elongation factor [Flavobacteriales
           bacterium ALC-1]
          Length = 157

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 95/155 (61%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T++G  K+++EL   +  ERP+  +AI+EAR  GDLSENAEY AAKE Q + E
Sbjct: 1   MSKVSYYTAEGLKKLREELSQLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            +++++E  +  A VID S +   ++   + V +  + +G +  Y +V + EAD+ SG +
Sbjct: 61  MKISKMEETLAGARVIDESQLDTSKVLALSIVKIKNQMNGMEMTYTLVAESEADLASGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S++SPI + L+GK +GD   +  P G   ++IL++
Sbjct: 121 SVNSPIGKGLLGKSVGDTAEIQVPNGTMKFDILEI 155


>gi|87311291|ref|ZP_01093413.1| transcription elongation factor greA [Blastopirellula marina DSM
           3645]
 gi|87286031|gb|EAQ77943.1| transcription elongation factor greA [Blastopirellula marina DSM
           3645]
          Length = 163

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 100/157 (63%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D+ P++ KGFDK++ +L   +  E PRI + I+ AR  GDL ENAEY  A+E Q + +
Sbjct: 4   MADRNPMSRKGFDKLKADLDHLESVEMPRITEKIATAREEGDLKENAEYHGARETQGMIQ 63

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++  +++ ++RA +ID +++    + F AT+++ + +  ++  Y +VG+ E D  +  +
Sbjct: 64  AKIHAIKSKLSRAYIIDPASIDQSVVGFFATITVEDLDMDEEDTYTLVGNGEEDFMNNKI 123

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            I SP+A++L+G ++GD++ + AP G    +IL++ +
Sbjct: 124 LIDSPMAQSLLGHKVGDVVPIEAPKGTYELKILKIEY 160


>gi|103486475|ref|YP_616036.1| transcription elongation factor GreA [Sphingopyxis alaskensis
           RB2256]
 gi|123253395|sp|Q1GUG9|GREA_SPHAL RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|98976552|gb|ABF52703.1| transcription elongation factor GreA [Sphingopyxis alaskensis
           RB2256]
          Length = 158

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/156 (47%), Positives = 110/156 (70%), Gaps = 2/156 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K+P+ ++G++K+  +L   +  ERP I+ AI EARA+GDLSENAEY AAKE Q   E  
Sbjct: 5   EKVPMLAEGYEKLTAQLAALKA-ERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEAT 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + +LE+ ++RA+VID +T+SGDRI FGATV+L +++      YQIVG  EAD ++G +S 
Sbjct: 64  IGDLEDKLSRAQVIDPTTLSGDRIVFGATVTLTDEDDKPV-KYQIVGQAEADAKAGKISY 122

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SP+ RALIG+ + D I V  P G+K Y + ++ +I
Sbjct: 123 NSPLGRALIGRRVDDEIEVTVPSGDKYYLVTKIEFI 158


>gi|309389965|gb|ADO77845.1| transcription elongation factor GreA [Halanaerobium praevalens DSM
           2228]
          Length = 160

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 100/156 (64%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D++ +T +GF+K++QEL + + E+R  + K I  AR +GD+SEN+EY  AK  Q   E
Sbjct: 1   MADQVMLTEEGFEKLEQELEYLETEKRREVAKRIKVAREFGDISENSEYDDAKNEQAFVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ E++N+++ A V+    ++  ++  G TV L + ++ ++ +Y +VG  EAD  +  +
Sbjct: 61  GRIQEIKNMLSDAHVVKDDEVTDKKVNLGTTVMLNDLDNDEQISYTLVGSAEADPLNYKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPI +A++G  +GD + V+ PGGE  YEI+ + 
Sbjct: 121 SNESPIGKAILGHAIGDQVKVDTPGGEVNYEIISIK 156


>gi|21674267|ref|NP_662332.1| transcription elongation factor GreA [Chlorobium tepidum TLS]
 gi|25452984|sp|Q8KCH5|GREA_CHLTE RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|21647437|gb|AAM72674.1| transcription elongation factor GreA [Chlorobium tepidum TLS]
          Length = 159

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 100/156 (64%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D+I +T  G++++++EL     E R  +++ I+EAR++GDLSENAEY AA+E Q+  E
Sbjct: 1   MSDRIYLTRDGYNRLKEELHLLMTETRKEVLEKIAEARSHGDLSENAEYDAAREEQSQLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119
            ++ E+EN +  A ++D   +  DR+    +V L   ++ D+   Y +V  +EAD   G 
Sbjct: 61  AKIGEIENKLASATILDPKQIKTDRVYILTSVKLRNLDAEDEIIEYTLVSSEEADSDLGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S+ SP+ R+LIGK +GD ++++ P GE  YEIL +
Sbjct: 121 ISVRSPVGRSLIGKSVGDKVTISVPKGELHYEILDI 156


>gi|319795595|ref|YP_004157235.1| transcription elongation factor greb [Variovorax paradoxus EPS]
 gi|315598058|gb|ADU39124.1| transcription elongation factor GreB [Variovorax paradoxus EPS]
          Length = 192

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 84/155 (54%), Gaps = 1/155 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+ +++ EL     EERP++++A+  A   GD SEN +Y   K+     + R+
Sbjct: 30  KNYITPEGYARLRDELLQLMDEERPKVVEAVHWAAKNGDRSENGDYLYGKKRLREIDRRI 89

Query: 64  AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV D S     D+I FGATV  V++   D++   I+G  EAD     VS 
Sbjct: 90  RFLTKRLEIAEVTDPSVHHGSDQIFFGATVRYVDETGDDERTITILGIDEADSAQSQVSW 149

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SPIARAL+    GD++ +  PGG    EIL V +
Sbjct: 150 ISPIARALLKSREGDVVKLVTPGGAHEVEILSVSY 184


>gi|152998029|ref|YP_001342864.1| transcription elongation factor GreA [Marinomonas sp. MWYL1]
 gi|150838953|gb|ABR72929.1| transcription elongation factor GreA [Marinomonas sp. MWYL1]
          Length = 158

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 104/158 (65%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T +G  ++++EL   +   RPR+I  I+ AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKKVPMTVEGEARLREELNHLKTVVRPRVIADIATAREHGDLKENAEYHAAREEQGFAEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  ++VID+    +  ++ FG TV+L   ++ +   Y+IVGD EADV+   +
Sbjct: 61  RIKEIEGKLADSQVIDVKALPASSKVIFGTTVTLFNVDTEETVTYKIVGDDEADVKEKKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S +SPIA+A+IGKE GD +++  P GE  YEI +V ++
Sbjct: 121 SYASPIAKAIIGKEEGDEVAIQVPSGEVVYEIEKVEYL 158


>gi|90022372|ref|YP_528199.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40]
 gi|89951972|gb|ABD81987.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40]
          Length = 160

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/156 (46%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K P+T  G   +++EL   ++ +RPRI++AI+EAR +GDL ENAEY AA+E Q   EGR+
Sbjct: 5   KYPMTVAGELALREELERLKKVDRPRIVQAIAEAREHGDLKENAEYHAAREQQGFCEGRI 64

Query: 64  AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
            E+E  ++ A+VID+ T+    ++ FG TV L+   + +   Y IVG+ EA ++   +S+
Sbjct: 65  QEIEAKLSNAQVIDVKTIPHSGKVIFGTTVDLINVETDEAITYTIVGEDEASIKLNKISV 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SPIARALIGKE GD+  V APGGE  YEI  V  I
Sbjct: 125 TSPIARALIGKEEGDVAVVRAPGGEIEYEIDSVKHI 160


>gi|332163327|ref|YP_004299904.1| transcription elongation factor GreB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325667557|gb|ADZ44201.1| transcription elongation factor GreB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862980|emb|CBX73113.1| transcription elongation factor greB [Yersinia enterocolitica
           W22703]
          Length = 165

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + +EL +  +EERP + +A+SEA A GD SENAEY   K+     +
Sbjct: 1   MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V +  ++   +  +++VG  E D     +
Sbjct: 61  RRVRFLTKRLEVLKIVDPDPRQEGKVYFGAWVQVENESGEQRI-FRLVGPDEFDPAKKWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D ++V  P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156


>gi|256850855|ref|ZP_05556244.1| transcription elongation factor GreB [Lactobacillus jensenii
           27-2-CHN]
 gi|260661066|ref|ZP_05861980.1| transcription elongation factor GreB [Lactobacillus jensenii
           115-3-CHN]
 gi|282934474|ref|ZP_06339729.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1]
 gi|297205729|ref|ZP_06923124.1| transcription elongation factor GreA [Lactobacillus jensenii
           JV-V16]
 gi|256615917|gb|EEU21105.1| transcription elongation factor GreB [Lactobacillus jensenii
           27-2-CHN]
 gi|260548003|gb|EEX23979.1| transcription elongation factor GreB [Lactobacillus jensenii
           115-3-CHN]
 gi|281301421|gb|EFA93710.1| transcription elongation factor GreA [Lactobacillus jensenii 208-1]
 gi|297148855|gb|EFH29153.1| transcription elongation factor GreA [Lactobacillus jensenii
           JV-V16]
          Length = 158

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  K  P+T+ G +K++ EL+  +  +RP +I+ I  AR+YGDLSEN+EY AAK+ Q+  
Sbjct: 1   MPQKTYPMTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E ++  A+VID  ++  + ++ G TV+  E    D + Y IVG  E+D  +G 
Sbjct: 61  EQRIAQVEQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK  GD +S++ PGG     I  V 
Sbjct: 121 ISNDSPIAQALLGKHKGDTVSISTPGGSFDVVINDVK 157


>gi|218899548|ref|YP_002447959.1| transcription elongation factor GreA [Bacillus cereus G9842]
 gi|228967454|ref|ZP_04128483.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|229048087|ref|ZP_04193660.1| Transcription elongation factor greA [Bacillus cereus AH676]
 gi|229146950|ref|ZP_04275314.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST24]
 gi|218545656|gb|ACK98050.1| transcription elongation factor GreA [Bacillus cereus G9842]
 gi|228636549|gb|EEK93015.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST24]
 gi|228723242|gb|EEL74614.1| Transcription elongation factor greA [Bacillus cereus AH676]
 gi|228792231|gb|EEM39804.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 175

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++ EL   +   R  +++ I  AR++GDLSEN+EY AAK+ Q  
Sbjct: 18  MSTEKTYPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAF 77

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN+I  A +I  +      +  G TV+  E  +GD++ Y IVG  EAD   G
Sbjct: 78  VEGRITQLENMIRNAVIIKDNGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEG 137

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 138 RISNDSPIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 175


>gi|85712942|ref|ZP_01043982.1| Transcription elongation factor GreA [Idiomarina baltica OS145]
 gi|85693248|gb|EAQ31206.1| Transcription elongation factor GreA [Idiomarina baltica OS145]
          Length = 158

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 121/158 (76%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP+T +G ++++QEL+  + E+RPRI++AI++AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNQIPMTERGAEQLRQELKRLKTEDRPRIVEAIADAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++ A++ID++ +  + ++ FG+TV++    + ++  YQIVGD EAD++S L+
Sbjct: 61  RIQEIESKLSNAQIIDVTKVPNNGKVIFGSTVTVYNTKTDEEVTYQIVGDDEADIKSNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIARALIGKE+ DI +V  P GE  YE+++V +I
Sbjct: 121 SVNSPIARALIGKEIDDIATVTTPNGEVEYEVVEVKYI 158


>gi|91204868|ref|YP_537223.1| transcription elongation factor GreA [Rickettsia bellii RML369-C]
 gi|123266252|sp|Q1RKI0|GREA_RICBR RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|91068412|gb|ABE04134.1| Transcription elongation factor GreA [Rickettsia bellii RML369-C]
          Length = 162

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 77/157 (49%), Positives = 115/157 (73%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M+ K P+T +GF+K++ EL+  +  ER ++ + I+EARA+GDLSENAEY+AA+E Q   E
Sbjct: 1   MMAKFPITDQGFEKLEHELKHLKHVERKKVSEDIAEARAHGDLSENAEYEAAREKQAFVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LE+I  RAE+I+++ +SGD I FGATV L++  + ++  Y IVG+ EAD+    V
Sbjct: 61  ARIKHLEDITARAEIINVAKLSGDSIKFGATVVLIDDETEEEVMYHIVGEYEADITKKRV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIA+ALIGK +GDI+ V  PGG K+YE++ + +
Sbjct: 121 SIASPIAKALIGKSVGDIVEVMTPGGVKSYEVVTIKY 157


>gi|218233280|ref|YP_002369189.1| transcription elongation factor GreA [Bacillus cereus B4264]
 gi|228923131|ref|ZP_04086422.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228941547|ref|ZP_04104096.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228960651|ref|ZP_04122296.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228974477|ref|ZP_04135044.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|229071888|ref|ZP_04205099.1| Transcription elongation factor greA [Bacillus cereus F65185]
 gi|229129660|ref|ZP_04258628.1| Transcription elongation factor greA [Bacillus cereus BDRD-Cer4]
 gi|229152583|ref|ZP_04280772.1| Transcription elongation factor greA [Bacillus cereus m1550]
 gi|229180655|ref|ZP_04307995.1| Transcription elongation factor greA [Bacillus cereus 172560W]
 gi|229192591|ref|ZP_04319552.1| Transcription elongation factor greA [Bacillus cereus ATCC 10876]
 gi|218161237|gb|ACK61229.1| transcription elongation factor GreA [Bacillus cereus B4264]
 gi|228590898|gb|EEK48756.1| Transcription elongation factor greA [Bacillus cereus ATCC 10876]
 gi|228602800|gb|EEK60281.1| Transcription elongation factor greA [Bacillus cereus 172560W]
 gi|228630844|gb|EEK87484.1| Transcription elongation factor greA [Bacillus cereus m1550]
 gi|228653777|gb|EEL09647.1| Transcription elongation factor greA [Bacillus cereus BDRD-Cer4]
 gi|228711184|gb|EEL63148.1| Transcription elongation factor greA [Bacillus cereus F65185]
 gi|228785194|gb|EEM33206.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228799015|gb|EEM45987.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228818103|gb|EEM64179.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228836510|gb|EEM81860.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 175

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++ EL   +   R  +++ I  AR++GDLSEN+EY AAK+ Q  
Sbjct: 18  MSTEKTYPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAF 77

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN+I  A +I  +      +  G TV+  E  +GD++ Y IVG  EAD   G
Sbjct: 78  VEGRITQLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEG 137

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 138 RISNDSPIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 175


>gi|88799656|ref|ZP_01115231.1| transcription elongation factor GreA [Reinekea sp. MED297]
 gi|88777550|gb|EAR08750.1| transcription elongation factor GreA [Reinekea sp. MED297]
          Length = 158

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +Q EL+  +  +RP +I AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQRYPMTVEGELALQAELKELKSVKRPEVIAAIAEAREHGDLKENAEYHAAREQQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+A++E  ++ ++VI++  +    ++ FG TV+L+   +     Y+IVGD EA+V+   +
Sbjct: 61  RIADIEGKLSASQVINVHDIPNTGKVIFGTTVTLLNTETDQGVTYKIVGDDEANVKVNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIARALIGKE GD+++V  PGG   YEI  V  
Sbjct: 121 SVNSPIARALIGKEEGDVVNVKTPGGTVEYEIELVEH 157


>gi|85373967|ref|YP_458029.1| transcription elongation factor GreA [Erythrobacter litoralis
           HTCC2594]
 gi|84787050|gb|ABC63232.1| transcription elongation factor [Erythrobacter litoralis HTCC2594]
          Length = 155

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/157 (47%), Positives = 116/157 (73%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+ ++G++++  +L+  +  ERP+++ AI EARA+GDLSENAEY AAKE Q   E 
Sbjct: 1   MEKVPMLAEGYERLTADLKALRA-ERPKVVDAIEEARAHGDLSENAEYHAAKERQGQIEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++A++E+ +TRA++ID +T+SGD+I FGATV+L++++      YQIVG  EAD   G +S
Sbjct: 60  QIADIEDRVTRAQIIDPATLSGDKIVFGATVTLLDEDDKPV-KYQIVGQTEADAAKGRIS 118

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            SSPI RALIGK++GD I V  P G+K Y + +V ++
Sbjct: 119 YSSPIGRALIGKQVGDEIEVTVPSGDKFYLVDKVEFV 155


>gi|153835620|ref|ZP_01988287.1| transcription elongation factor GreA [Vibrio harveyi HY01]
 gi|148867771|gb|EDL67020.1| transcription elongation factor GreA [Vibrio harveyi HY01]
          Length = 157

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 109/158 (68%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G   ++ EL    +  RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTLRGEQLLRTELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E   +  +VID+ S  +  ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60  QIRDIEYKPSVVQVIDVTSMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIAR LIGK  GD + +  PGG K +EI  V +I
Sbjct: 120 SISSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157


>gi|89101202|ref|ZP_01174032.1| transcription elongation factor GreA [Bacillus sp. NRRL B-14911]
 gi|89084088|gb|EAR63259.1| transcription elongation factor GreA [Bacillus sp. NRRL B-14911]
          Length = 158

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
            +K+ P+T  G +K++QEL   +  +R  +++ I  AR++GDLSEN+EY +AKE Q   E
Sbjct: 3   TEKVFPMTQAGKEKLEQELEHLKTVKRKDVVERIKIARSFGDLSENSEYDSAKEEQAFVE 62

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+  LEN+I  A++I+    SGD +  G +V+ VE   G++++Y IVG  EAD   G +
Sbjct: 63  GRITTLENMIRNAKIIEEDEASGDTVTLGRSVTFVELPDGEEESYTIVGSAEADPFEGKI 122

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPIA++L+GK +GD ++V  PGG+ +  I  + 
Sbjct: 123 SNDSPIAKSLMGKRVGDEVTVQTPGGDMSVRITSIK 158


>gi|161507838|ref|YP_001577802.1| transcription elongation [Lactobacillus helveticus DPC 4571]
 gi|160348827|gb|ABX27501.1| transcription elongation [Lactobacillus helveticus DPC 4571]
          Length = 158

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 102/157 (64%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T++G +K+Q EL+  +  +RP +I+ I  AR++GDLSEN+EY AAK+ Q+  
Sbjct: 1   MPEKSYPMTAEGKEKLQAELKNLKLVKRPEVIERIKVARSFGDLSENSEYDAAKDEQSHV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E ++  A+V+D  ++  + ++ G TV+  E  + D + Y IVG  E+D  +G 
Sbjct: 61  EDRIAQVEEMLKYAQVVDADSVDPNEVSVGKTVTYTEVGTDDAETYTIVGSDESDPLNGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK+ G+ +S+  PG +    I  V 
Sbjct: 121 ISNDSPIAQALLGKKKGETVSITTPGSQFDVVINNVE 157


>gi|91228943|ref|ZP_01262840.1| transcription elongation factor GreA [Vibrio alginolyticus 12G01]
 gi|262393373|ref|YP_003285227.1| transcription elongation factor GreA [Vibrio sp. Ex25]
 gi|269968316|ref|ZP_06182338.1| transcription elongation factor GreA [Vibrio alginolyticus 40B]
 gi|91187503|gb|EAS73838.1| transcription elongation factor GreA [Vibrio alginolyticus 12G01]
 gi|262336967|gb|ACY50762.1| transcription elongation factor GreA [Vibrio sp. Ex25]
 gi|269827067|gb|EEZ81379.1| transcription elongation factor GreA [Vibrio alginolyticus 40B]
          Length = 157

 Score =  141 bits (356), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G  K++ EL    +  RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTLRGEQKLRAELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M    ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60  QIRDIEYKLSVAQVIDVTKMENTGKVIFGSTVTLIDIDTEEEKTYQIVGDDEADIKAGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR LIGK  GD +++  PGG K +EI +V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVAIQTPGGAKDFEIDRVEYI 157


>gi|327399334|ref|YP_004340203.1| transcription elongation factor GreA [Hippea maritima DSM 10411]
 gi|327181963|gb|AEA34144.1| transcription elongation factor GreA [Hippea maritima DSM 10411]
          Length = 156

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/156 (44%), Positives = 103/156 (66%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +K+ +T +G+ K+ +E+   Q+ +RP IIK I EARA GDLSENAEY AAKE   L E
Sbjct: 1   MAEKMLITPEGYRKLLEEMEDLQKNQRPAIIKEIEEARAKGDLSENAEYHAAKEKHALIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R++EL   I  A+V+D  T+  DR+ FG  V L +    ++  Y IVG+ E+D ++G +
Sbjct: 61  NRISELSKKINNAQVVDPETVPKDRVNFGCKVILYDIEKEEEIEYMIVGEDESDPENGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           SI+SPIAR+L+GK+ GD + V  P G + +EI ++ 
Sbjct: 121 SINSPIARSLLGKQEGDEVEVKVPAGVRRFEIEEIK 156


>gi|224417876|ref|ZP_03655882.1| transcription elongation factor GreA [Helicobacter canadensis MIT
           98-5491]
          Length = 159

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/152 (41%), Positives = 102/152 (67%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T  G++K+  EL+  ++ ERP  IK I  AR +GDL ENAEY AA+E Q   + R+ E
Sbjct: 3   PMTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINE 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A VID ST++ D+++FG+T++L + +S ++  Y IVG  E++   GL+S  SP
Sbjct: 63  LTQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +A+ L+GK +GD +++  P G+  YEIL++ +
Sbjct: 123 LAKQLLGKVVGDEVTIQLPKGKVDYEILEICY 154


>gi|134094396|ref|YP_001099471.1| putative transcription elongation factor and transcript cleavage
           [Herminiimonas arsenicoxydans]
 gi|133738299|emb|CAL61344.1| Transcription elongation factor greA (Transcript cleavage factor
           greA) [Herminiimonas arsenicoxydans]
          Length = 157

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 80/154 (51%), Positives = 112/154 (72%), Gaps = 1/154 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T  G + +++EL   + +ERP +I AI+EARA GDLSENA+Y AAKE Q+  EGR+A+
Sbjct: 4   PITPHGANLMKEELHRLKTKERPWVINAIAEARAQGDLSENADYDAAKEKQSFIEGRIAD 63

Query: 66  LENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           LE  +  +++ID +T  +  RI F ATV L + +SGDK  YQIVG  EAD++   VSI+S
Sbjct: 64  LEGKLGTSQIIDPTTLEADGRIVFAATVDLEDLDSGDKVTYQIVGIDEADLKEKKVSITS 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           PIARA+IGK +GD+++V AP G + YE+LQV +I
Sbjct: 124 PIARAMIGKSVGDVVAVEAPAGIREYEVLQVRYI 157


>gi|118602845|ref|YP_904060.1| transcription elongation factor GreA [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|189042247|sp|A1AXD2|GREA_RUTMC RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|118567784|gb|ABL02589.1| transcription elongation factor GreA [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 158

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 103/158 (65%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++ IP+T  G   ++ EL   +   RPRII+ I  ARA+GDL ENAEY AAKE Q   EG
Sbjct: 1   MENIPMTVFGAKVLEAELLKLKNVSRPRIIENIVTARAHGDLKENAEYHAAKEEQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ ++R +VID++ ++ D R  FG T++L+      +  Y+IVG+ EAD+  G +
Sbjct: 61  RIKEVESKLSRMQVIDVTKLNQDGRCVFGTTITLMNIEDDSETTYKIVGEDEADIILGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S  SPIA AL+G E GD ++V AP G+  YE+L V +I
Sbjct: 121 SCHSPIASALMGNEEGDEVTVKAPKGDIVYEVLSVEYI 158


>gi|157164259|ref|YP_001466449.1| transcription elongation factor GreA [Campylobacter concisus 13826]
 gi|112801597|gb|EAT98941.1| transcription elongation factor GreA [Campylobacter concisus 13826]
          Length = 161

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/157 (40%), Positives = 105/157 (66%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +  P+T  G++KI+ EL+  +  +RP+I+  I  AR++GDL ENAEY AAKE Q   +
Sbjct: 1   MSE--PMTMHGYEKIEAELKDLRLVQRPQIVTEIDIARSHGDLKENAEYHAAKEKQAFID 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+AEL  ++  AEVID S+   DR+ FG++V+++++ +  +  Y IVG  E+D+  G +
Sbjct: 59  ARIAELSALLANAEVIDPSSYEHDRVRFGSSVTIMDEETEVEHTYTIVGVSESDLDKGYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+A+ L+GK  GD +++N P G    EI+++ +
Sbjct: 119 SINSPLAKQLLGKAEGDEVALNLPKGRSDVEIVKICY 155


>gi|167625072|ref|YP_001675366.1| transcription elongation factor GreA [Shewanella halifaxensis
           HAW-EB4]
 gi|167355094|gb|ABZ77707.1| transcription elongation factor GreA [Shewanella halifaxensis
           HAW-EB4]
          Length = 153

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/153 (44%), Positives = 108/153 (70%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G +++++EL   + E RP+I +AI EAR  GDL ENAEY AA+E Q L E R+ ++
Sbjct: 1   MTVVGAERLRKELDHLKFERRPKIAEAIGEARELGDLKENAEYHAAREEQGLCEARVRDI 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ A++ID++TM  + R+ FG+TV+++  ++  +  Y+IVG+ EA+++  L+S+SSP
Sbjct: 61  EGKLSHAQIIDVTTMDNNGRVIFGSTVTILNLDTEGEVTYRIVGEDEANIRENLLSVSSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IAR LIGK L D IS+  PGG   +EI++V +I
Sbjct: 121 IARGLIGKNLDDEISIVTPGGTTDFEIIKVDYI 153


>gi|34581077|ref|ZP_00142557.1| transcription elongation factor EF [Rickettsia sibirica 246]
 gi|25453000|sp|Q92FZ5|GREA_RICCN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|28262462|gb|EAA25966.1| transcription elongation factor EF [Rickettsia sibirica 246]
          Length = 162

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 80/157 (50%), Positives = 114/157 (72%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K P+T+KGF+K++ EL+  +  ER +I   I+EAR +GDLSENAEY+AA+E Q   E
Sbjct: 1   MNTKFPITAKGFEKLEHELKHLKHVERKKISADIAEAREHGDLSENAEYEAAREKQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAE+IDI  +SGD I FGATV+L++ ++ ++  Y IVG+ EAD+    V
Sbjct: 61  GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIA+ALIGK +GD + V  P G K+YE++ V +
Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 157


>gi|84624395|ref|YP_451767.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|166711939|ref|ZP_02243146.1| transcription elongation factor GreA [Xanthomonas oryzae pv.
           oryzicola BLS256]
 gi|84368335|dbj|BAE69493.1| transcription elongation factor greA [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 158

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 77/154 (50%), Positives = 118/154 (76%), Gaps = 1/154 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+TSKG  ++++EL   +  +RP +I AI+EARA+GDL ENAEY AA+E Q+  EGR+ +
Sbjct: 4   PMTSKGALRLREELEQLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQ 63

Query: 66  LENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           LE  ++ AE+IDI+   +G++I FGATV+L +  + ++K YQIVGD EAD++ GL++ISS
Sbjct: 64  LEGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISS 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           P+ARALIGK  GD ++++AP G++ YE++ V ++
Sbjct: 124 PLARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 157


>gi|90418035|ref|ZP_01225947.1| transcription elongation factor greA [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337707|gb|EAS51358.1| transcription elongation factor greA [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 157

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 103/156 (66%), Positives = 132/156 (84%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T+ G+D +++ELR RQQEERPRII AISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MEKVPMTNHGYDALREELRRRQQEERPRIIAAISEARAHGDLSENAEYHAAKESQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R++ELE++  RAEVID++ MSG  I FGATV L+++++ ++K YQIVGDQEADV+ G +S
Sbjct: 61  RISELEDLTARAEVIDVTKMSGATIKFGATVKLIDEDTEEEKTYQIVGDQEADVKKGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ISSPIARALIGK  GD I V APGG ++YEIL+V W
Sbjct: 121 ISSPIARALIGKTDGDTIEVAAPGGARSYEILEVRW 156


>gi|51474029|ref|YP_067786.1| transcription elongation factor GreA [Rickettsia typhi str.
           Wilmington]
 gi|81389908|sp|Q68VQ2|GREA_RICTY RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|51460341|gb|AAU04304.1| transcription elongation factor GreA [Rickettsia typhi str.
           Wilmington]
          Length = 162

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 80/157 (50%), Positives = 114/157 (72%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K P+T+KGF K++ EL+  +  ER +I + I+EAR +GDLSENAEY+AA+E Q   E
Sbjct: 1   MNTKFPITAKGFKKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAE+IDI  +SGD I FGATV+L++ ++ ++  Y IVG+ EAD+    V
Sbjct: 61  GRIKELEDMTARAEIIDICKLSGDNIKFGATVTLIDDDTEEEVTYVIVGEYEADITKKRV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIA+ALIGK +GD + V  P G K+YE++ V +
Sbjct: 121 SIASPIAKALIGKSVGDFVEVITPKGLKSYEVVTVEY 157


>gi|313201051|ref|YP_004039709.1| transcription elongation factor greb [Methylovorus sp. MP688]
 gi|312440367|gb|ADQ84473.1| transcription elongation factor GreB [Methylovorus sp. MP688]
          Length = 164

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 87/159 (54%), Gaps = 2/159 (1%)

Query: 1   MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M D K  +T +G+  ++ E     + ERP+++  +S A + GD SEN +Y   K      
Sbjct: 1   MADQKNYITPEGYATLKAEFEQLYKIERPKVVSDVSWAASNGDRSENGDYIYGKRRLRQI 60

Query: 60  EGRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           + R+  L   +  A ++D       +++ FGA VSL       + +Y+IVG  E D   G
Sbjct: 61  DSRLRFLMKSMDLAVIVDPKEQQSLEKVFFGAWVSLYSLERDIEHHYRIVGQNELDPTRG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +S  SP+ARA++GK++GD++    P GE++YEI+ + +
Sbjct: 121 YISWISPLARAMLGKQIGDVVRAQTPAGEESYEIIDIRY 159


>gi|325280567|ref|YP_004253109.1| transcription elongation factor GreA [Odoribacter splanchnicus DSM
           20712]
 gi|324312376|gb|ADY32929.1| transcription elongation factor GreA [Odoribacter splanchnicus DSM
           20712]
          Length = 158

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 65/156 (41%), Positives = 97/156 (62%), Gaps = 1/156 (0%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K+  VT +G  K+Q+EL   Q  ERP+I KAI EA   GD+SENAEY AAK+ Q L 
Sbjct: 1   MSNKVSYVTKEGLKKLQEELERLQNVERPKISKAIGEAIEKGDISENAEYDAAKDAQGLL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E ++A+L++ I    VID S +   ++     V++    +G    Y +V + EA+ + G 
Sbjct: 61  EAKIAQLKDTIATCRVIDESQIDTSKVQMLNKVTIKNTKTGATMTYTLVSETEANFKEGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +SI +PIA+AL+GK+LGD + V  P GE  +EI+ +
Sbjct: 121 LSIHTPIAQALVGKKLGDKVMVKVPAGEMEFEIMDI 156


>gi|332520122|ref|ZP_08396586.1| transcription elongation factor GreA [Lacinutrix algicola 5H-3-7-4]
 gi|332044681|gb|EGI80875.1| transcription elongation factor GreA [Lacinutrix algicola 5H-3-7-4]
          Length = 157

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/155 (38%), Positives = 98/155 (63%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T++G  K+++EL+  +  ER +   AI+EAR  GDLSENAEY AAKE Q + E
Sbjct: 1   MSKVSYYTAEGLKKLREELKHLKDVERVKASNAIAEARDKGDLSENAEYDAAKEAQGMLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+++LE+ +  A +ID S M   +I   + V +  + +G + NY +V D EAD+ SG +
Sbjct: 61  MRISKLEDQLAGARIIDESQMDTSKILVLSKVKIKNQTNGMEMNYTLVADGEADLASGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S++SPI + L+GK +GD+  ++ P G   ++I+++
Sbjct: 121 SVNSPIGKGLLGKSVGDVAEISVPSGIMKFDIIEI 155


>gi|315641239|ref|ZP_07896316.1| transcription elongation factor GreA [Enterococcus italicus DSM
           15952]
 gi|315483006|gb|EFU73525.1| transcription elongation factor GreA [Enterococcus italicus DSM
           15952]
          Length = 157

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/157 (43%), Positives = 104/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K+  +T +G  K++QEL   +  +R  II+ I  AR++GDLSEN+EY++AK+ Q   
Sbjct: 1   MVEKVYPMTLEGKAKLEQELEELKTVKRGEIIERIKIARSFGDLSENSEYESAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE +I  A++ID   +  D ++ G TV+ VE   GD++ Y IVG  EAD  SG 
Sbjct: 61  EGRITTLETMIRFAQIIDNDGVDQDEVSIGKTVTFVELPDGDEEEYTIVGSAEADPFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK+L D ++++ PGG+   +I+ V 
Sbjct: 121 ISNDSPIAQALIGKKLNDEVTISTPGGDMPVKIISVK 157


>gi|148979040|ref|ZP_01815285.1| transcription elongation factor GreA [Vibrionales bacterium SWAT-3]
 gi|145962013|gb|EDK27301.1| transcription elongation factor GreA [Vibrionales bacterium SWAT-3]
          Length = 157

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 67/158 (42%), Positives = 108/158 (68%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G  +++ EL    +  RP I  AI EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTVRGAQQLRDELDRLLK-LRPVISAAIGEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A++ID++ M    +I FG TV+L++ ++ ++  YQIV + EAD+++G +
Sbjct: 60  QIRDIEYKLSLAQIIDVTQMENTGKIIFGTTVTLIDVDTDEEYRYQIVSEDEADIKTGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIAR LIGK  GD + ++ PGG+K YEI +V +I
Sbjct: 120 SVKSPIARGLIGKMEGDEVMISTPGGDKDYEIDKVEYI 157


>gi|15837710|ref|NP_298398.1| transcription elongation factor GreA [Xylella fastidiosa 9a5c]
 gi|11279753|pir||D82723 transcription elongation factor XF1108 [imported] - Xylella
           fastidiosa (strain 9a5c)
 gi|9106063|gb|AAF83918.1|AE003946_9 transcriptional elongation factor [Xylella fastidiosa 9a5c]
          Length = 154

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 79/153 (51%), Positives = 110/153 (71%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T KG  +++ EL   +  +RP II AI+EARA+GDL ENAEY AA+E Q+  EGR+ +L
Sbjct: 1   MTLKGVRRLRDELEHLKSVKRPEIINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60

Query: 67  ENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ AEVID     +G +I FGATV+LV+  + ++  YQIVGD EAD++ GLV+ISSP
Sbjct: 61  EGELSHAEVIDVAKLNAGTKIVFGATVTLVDLETDEESRYQIVGDLEADIKQGLVAISSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +ARALIGK+ GD I + AP G + YE++ V +I
Sbjct: 121 VARALIGKQEGDTIVIEAPAGRREYEVVAVEYI 153


>gi|189347164|ref|YP_001943693.1| transcription elongation factor GreA [Chlorobium limicola DSM 245]
 gi|238692161|sp|B3EE12|GREA_CHLL2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|189341311|gb|ACD90714.1| transcription elongation factor GreA [Chlorobium limicola DSM 245]
          Length = 159

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 98/156 (62%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D+I +T  G++++++EL     + R  +++ I+EAR++GDLSENAEY AA+E Q+  E
Sbjct: 1   MSDRIYLTRDGYNRLKEELYVLIHQTRKEVLEKIAEARSHGDLSENAEYDAAREQQSQTE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119
            R+A+LEN ++ A ++D   +  D++    +V L      D+   Y +V  +EAD   G 
Sbjct: 61  ARIADLENKLSTATILDPKLIKTDKVYILTSVKLKNLQVEDEVIEYTLVSSEEADTDLGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S+ SP+ R+LIGK +GD + +  P GE  +EIL +
Sbjct: 121 ISVRSPVGRSLIGKTVGDKVHITVPKGELHFEILDI 156


>gi|77456995|ref|YP_346500.1| transcription elongation factor GreA [Pseudomonas fluorescens
           Pf0-1]
 gi|77380998|gb|ABA72511.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Pseudomonas fluorescens Pf0-1]
          Length = 158

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T +G   +++E     +  RP++ + I  AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MNKYPMTVQGSKALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A +ID++T+    ++ FG TV +    + +   YQIVG+ EAD++ G +
Sbjct: 61  RIRDIEGRLQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKLGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIARALI KE GD + V  PGG+  YEI++V  I
Sbjct: 121 SVGSPIARALIAKEEGDTVVVKTPGGDIEYEIVEVRHI 158


>gi|298529319|ref|ZP_07016722.1| transcription elongation factor GreA [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298510755|gb|EFI34658.1| transcription elongation factor GreA [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 165

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 104/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D IP++ +GF +++QEL   Q  ERP +I+AI EAR  GDL ENA Y AA+E Q L E
Sbjct: 1   MSDSIPISEEGFARLKQELEKLQA-ERPEVIQAIKEAREEGDLKENAGYDAARERQGLLE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A++ + +    +ID+ TM G+++ +GATV +   ++G+ K Y ++G  E D     +
Sbjct: 60  AKIAQITSRMPMFNIIDLDTMDGNKVCYGATVEIENVDTGEVKKYTLLGPDETDFVPDSL 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+ SP+ARAL+G+E+GD   VNAP G+  YEIL + +
Sbjct: 120 SVFSPLARALMGREVGDETVVNAPKGKIEYEILDIKF 156


>gi|118475144|ref|YP_891529.1| transcription elongation factor GreA [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414370|gb|ABK82790.1| transcription elongation factor GreA [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 161

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 107/157 (68%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +  P+T  G++K+  EL+  +  +RP I++ I  AR++GDL ENAEY AA+E Q   E
Sbjct: 1   MTE--PMTLYGYEKLSSELKDLKLVQRPAIVEEIDIARSHGDLKENAEYHAAREKQAFIE 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+AEL +I++RA+VI+ S    DR+ FG+T+++++ ++  +  Y IVG  E++++ GL+
Sbjct: 59  NRIAELSDILSRAKVINPSEYEHDRVKFGSTITIMDVDTELETTYTIVGISESNLERGLI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI++P+A+ LIGK  GD ++++ P G    EI+ V +
Sbjct: 119 SINTPLAKQLIGKSEGDNVTLSLPNGISEIEIVSVCY 155


>gi|319760241|ref|YP_004124179.1| transcription elongation factor GreA [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318038955|gb|ADV33505.1| transcription elongation factor GreA [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 160

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 107/158 (67%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G ++++++L + +   RP I K+ISEAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKKFPMTLRGVEQLREKLDYLKNVLRPIITKSISEARRHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++   ++D++  +S  ++ FG TV +    +  KK Y+IVGD E++++  ++
Sbjct: 61  RIREIEYKLSNVYIVDVTKVISDKKVVFGVTVCIENVITQCKKIYRIVGDDESNLKKNMI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIA+ LIG + GDI+ ++ P G+  Y I+++ ++
Sbjct: 121 SISSPIAQGLIGHKEGDIVLISTPNGKIEYRIVKIEYL 158


>gi|163857070|ref|YP_001631368.1| transcription elongation factor GreB [Bordetella petrii DSM 12804]
 gi|163260798|emb|CAP43100.1| greB [Bordetella petrii]
          Length = 185

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 87/155 (56%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T  G+ +++ EL      ERP +++ +S A + GD SEN +Y   K+     + RM
Sbjct: 28  RNYMTPAGYARLRDELAHLMNVERPAVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRM 87

Query: 64  AELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D  +  + D++ FGATV+ ++K  GD     IVG  EA+  +G +S 
Sbjct: 88  RFLTKRLDIAEVVDPAAQPNRDQVFFGATVTYLDKG-GDTHEVTIVGVDEAEPLAGKISW 146

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARALI    GD + +  PGG +  +IL+V +
Sbjct: 147 ISPVARALIKAREGDTVVLRTPGGVEELDILEVRY 181


>gi|313141419|ref|ZP_07803612.1| transcription elongation factor greA [Helicobacter canadensis MIT
           98-5491]
 gi|313130450|gb|EFR48067.1| transcription elongation factor greA [Helicobacter canadensis MIT
           98-5491]
          Length = 163

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/152 (41%), Positives = 102/152 (67%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T  G++K+  EL+  ++ ERP  IK I  AR +GDL ENAEY AA+E Q   + R+ E
Sbjct: 7   PMTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINE 66

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A VID ST++ D+++FG+T++L + +S ++  Y IVG  E++   GL+S  SP
Sbjct: 67  LTQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSP 126

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +A+ L+GK +GD +++  P G+  YEIL++ +
Sbjct: 127 LAKQLLGKVVGDEVTIQLPKGKVDYEILEICY 158


>gi|126215706|sp|Q4UJS8|GREA_RICFE RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
          Length = 162

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 80/157 (50%), Positives = 115/157 (73%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K P+T+KGF+K++ EL+  +  ER +I + I+EAR +GDLSENAEY+AA+E Q   E
Sbjct: 1   MNTKFPITAKGFEKLEHELKHLKHVERKKISEDIAEAREHGDLSENAEYEAAREKQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE++  RAE+IDI  +SGD I FGATV+L++ ++ ++  Y IVG+ EAD+    V
Sbjct: 61  GRIKELEDMTARAEIIDIGKLSGDNIKFGATVTLIDDDTEEEVTYIIVGEYEADITRKRV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SPIA+ALIGK +GD + V  P G K+YE++ V +
Sbjct: 121 SIASPIAKALIGKSVGDFVEVTTPKGSKSYEVVTVEY 157


>gi|91216953|ref|ZP_01253916.1| transcription elongation factor greA [Psychroflexus torquis ATCC
           700755]
 gi|91184824|gb|EAS71204.1| transcription elongation factor greA [Psychroflexus torquis ATCC
           700755]
          Length = 158

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/155 (38%), Positives = 91/155 (58%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T +G  K++ E    +  ERP+  + I++AR  GDLSENAEY AAKE Q + E
Sbjct: 1   MSKVSYYTEEGLKKLRAEFEQLRDVERPKASQDIADARDKGDLSENAEYDAAKEAQGMLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+A+LE ++  A VID S +   ++   + V L       +  Y++V   EAD+++G +
Sbjct: 61  MRLAKLEQVVANARVIDESQLDTSKVLIHSKVRLKNVKMNQEMTYKLVAQSEADLKAGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SPI + L+GKE GD   +  P G+ T+EIL+V
Sbjct: 121 SVDSPIGKGLLGKEAGDTAEIEVPSGKITFEILEV 155


>gi|260429205|ref|ZP_05783182.1| transcription elongation factor GreA [Citreicella sp. SE45]
 gi|260419828|gb|EEX13081.1| transcription elongation factor GreA [Citreicella sp. SE45]
          Length = 156

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/156 (50%), Positives = 112/156 (71%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KI +T  GF  ++ EL+  + EERP +I+AI+EAR  GDL ENAEY +A+E Q   EG
Sbjct: 1   MEKILITRAGFTALETELKKLKSEERPAVIQAIAEARELGDLKENAEYHSAREKQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ E+E+I+  AEVID        + FGATV +V++++ ++K +QIVG+ EA ++ GL++
Sbjct: 61  RIKEIESIMGLAEVIDP-RTLSGAVKFGATVKVVDEDTDEEKTWQIVGEHEASIERGLLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SPIARALIGKE GD + V  PGGEK+YEIL + +
Sbjct: 120 IKSPIARALIGKEAGDSVEVRTPGGEKSYEILSIDY 155


>gi|330830899|ref|YP_004393851.1| transcription elongation factor GreA [Aeromonas veronii B565]
 gi|328806035|gb|AEB51234.1| transcription elongation factor GreA [Aeromonas veronii B565]
          Length = 153

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/153 (47%), Positives = 115/153 (75%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G +K+++EL + + E RP+II+AI++AR +GDL ENAEY AA+E Q   EGR+ E+
Sbjct: 1   MTVRGAEKLREELDYLKTELRPQIIEAIADAREHGDLKENAEYHAAREQQGFCEGRIQEI 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ A+VID++ M+ + R+ FGATV+L++  + ++  Y+IVGD EAD++  L+S++SP
Sbjct: 61  EAKLSNAQVIDVTKMTNNGRVIFGATVTLLKSETEEEVVYRIVGDDEADIKQNLISVNSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IARALIGKE+ D+  V  P G+  YE+L+V +I
Sbjct: 121 IARALIGKEVDDVAIVKTPAGDVEYEVLEVAYI 153


>gi|209364053|ref|YP_001424721.2| transcription elongation factor [Coxiella burnetii Dugway
           5J108-111]
 gi|212212334|ref|YP_002303270.1| transcription elongation factor [Coxiella burnetii CbuG_Q212]
 gi|212218695|ref|YP_002305482.1| transcription elongation factor [Coxiella burnetii CbuK_Q154]
 gi|215919153|ref|NP_820273.2| transcription elongation factor [Coxiella burnetii RSA 493]
 gi|206584037|gb|AAO90787.2| transcription elongation factor [Coxiella burnetii RSA 493]
 gi|207081986|gb|ABS78133.2| transcription elongation factor [Coxiella burnetii Dugway
           5J108-111]
 gi|212010744|gb|ACJ18125.1| transcription elongation factor [Coxiella burnetii CbuG_Q212]
 gi|212012957|gb|ACJ20337.1| transcription elongation factor [Coxiella burnetii CbuK_Q154]
          Length = 173

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 104/159 (65%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   IP+T  G  K++ EL   +  ERP++I AI+EARA+GDL ENAEY AA+E Q   E
Sbjct: 15  MQTIIPITVNGVTKLRTELETLKTVERPKVIAAIAEARAHGDLKENAEYHAARERQGFIE 74

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+ E+E  +   ++IDIS +  + ++ FGATV+L+   +  +  YQI+G  EA+++   
Sbjct: 75  GRILEIEAKLANCQIIDISQIPNEGKVIFGATVTLLNLETQTEVTYQIMGVDEANLKENK 134

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SISSP ARA+IGK + D+I V  P G   YEI+ V ++
Sbjct: 135 ISISSPTARAMIGKYIEDVIEVTTPEGPVEYEIVDVEYL 173


>gi|253996794|ref|YP_003048858.1| transcription elongation factor GreB [Methylotenera mobilis JLW8]
 gi|253983473|gb|ACT48331.1| transcription elongation factor GreB [Methylotenera mobilis JLW8]
          Length = 161

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K  +T +GF+ ++ E     + ERP I++ +S A + GD SEN +Y   K      + R
Sbjct: 6   EKNYITPEGFEALRAEFHQLYKIERPEIVRTVSWAASNGDRSENGDYIYGKRRLRQIDSR 65

Query: 63  MAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
              L   +  AE++D S     +++ FGA V+L   +   +  Y+IVG  E +   G +S
Sbjct: 66  CRHLMRRMDLAEIVDASQQQHLEKVYFGAWVTLYNLDDDTEYTYRIVGKDELEPSKGYIS 125

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SP+A++++GK +GD +    P GE T+EI+++ +
Sbjct: 126 WVSPLAKSILGKSIGDTVRAATPKGEATFEIIEIKY 161


>gi|167626378|ref|YP_001676878.1| transcription elongation factor GreA [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|241668809|ref|ZP_04756387.1| GreA/GreB family elongation factor [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877341|ref|ZP_05250051.1| transcriptional elongation factor [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|259647641|sp|B0TYL2|GREA_FRAP2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|167596379|gb|ABZ86377.1| GreA/GreB family elongation factor [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|254843362|gb|EET21776.1| transcriptional elongation factor [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 160

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/159 (42%), Positives = 112/159 (70%), Gaps = 2/159 (1%)

Query: 1   MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M + ++P+T  G   ++ EL   ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + 
Sbjct: 1   MTNGRVPMTPAGEQALRAELSRLKKTERPAIIEAIAEARDHGDLKENAEYHAARERQGII 60

Query: 60  EGRMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           EGR+ ++E+ ++ A+VID++   +   + FGATV+++  ++ ++  YQIVG+ EAD+ + 
Sbjct: 61  EGRIKDIESKLSNAQVIDVTKLQANGMVIFGATVTVINVDTEEETTYQIVGEDEADIDNH 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +S+ +P+ARALI KE+GD I ++ P G+ TYEI+ V +
Sbjct: 121 KISVVAPLARALIKKEVGDEIILDTPKGKVTYEIVDVEY 159


>gi|34541325|ref|NP_905804.1| transcription elongation factor GreA [Porphyromonas gingivalis W83]
 gi|188994287|ref|YP_001928539.1| putative transcription elongation factor [Porphyromonas gingivalis
           ATCC 33277]
 gi|34397641|gb|AAQ66703.1| transcription elongation factor GreA [Porphyromonas gingivalis W83]
 gi|188593967|dbj|BAG32942.1| putative transcription elongation factor [Porphyromonas gingivalis
           ATCC 33277]
          Length = 156

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 97/155 (62%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+DKI  EL   +  +RP I + I+EAR  GDLSENAEY AAKE Q + E 
Sbjct: 1   MAYNYITQEGYDKILAELAELESVQRPEISRQIAEARDKGDLSENAEYDAAKEAQGILET 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++A+L+ +I  A +ID S +S + +     V++    +G    Y +V D EA+++   +S
Sbjct: 61  KIAQLKGLIANARIIDESQVSTESVQILNKVTIKNVKTGVVMAYTLVSDSEANLKENKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +++PIA+ L+GK++GD++S+  P G   +EI+ + 
Sbjct: 121 VNTPIAQGLMGKKIGDLVSIKVPSGLVEFEIIDIT 155


>gi|153950771|ref|YP_001402929.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
           IP 31758]
 gi|152962266|gb|ABS49727.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
           IP 31758]
          Length = 171

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + +EL +  +EERP + +A+SEA A GD SENAEY   K+     +
Sbjct: 1   MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V +  +    +  +++VG  E D     +
Sbjct: 61  RRVRFLAKRLEVLKIVDPDPRQEGKVFFGAWVRVENEQEEQRI-FRLVGPDEFDPAKKWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D ++V  P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156


>gi|293606024|ref|ZP_06688389.1| transcription elongation factor GreB [Achromobacter piechaudii ATCC
           43553]
 gi|292815479|gb|EFF74595.1| transcription elongation factor GreB [Achromobacter piechaudii ATCC
           43553]
          Length = 183

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+++++ EL      ERP +++ +S A + GD SEN +Y   K+     + RM
Sbjct: 29  KNYMTPEGYERLRAELTHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRM 88

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D +   + D++ FGATV   +K    +    IVG  EA+  +G +S 
Sbjct: 89  RFLTKRLDIAEVVDPALQPNRDQVFFGATVRYSDKAGE-EHTVTIVGVDEAEPLAGKISW 147

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARALI    GD + +  PGG +  +IL+V +
Sbjct: 148 ISPVARALIKAREGDTVVLRTPGGIEELDILEVRY 182


>gi|149183148|ref|ZP_01861597.1| transcription elongation factor GreA [Bacillus sp. SG-1]
 gi|148849131|gb|EDL63332.1| transcription elongation factor GreA [Bacillus sp. SG-1]
          Length = 158

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 100/155 (64%), Gaps = 1/155 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
            +K+ P+T +G +K+++EL   +  +R  +++ I  AR++GDLSEN+EY AAK+ Q   E
Sbjct: 3   TEKVFPMTQEGKEKLEKELEQLKSVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVE 62

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR++ LEN+I  A++I    M+ D +  G +V+ +E   GD++ Y IVG  EAD   G +
Sbjct: 63  GRISTLENMIRNAKIIQEDEMNSDTVTLGKSVTFIELPDGDEETYTIVGSAEADPFEGKI 122

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SPIA++L+G ++G  +SV  PGGE   +I  V
Sbjct: 123 SNDSPIAKSLLGHKVGSEVSVQTPGGEMNVKITAV 157


>gi|94986751|ref|YP_594684.1| transcription elongation factor GreA [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731000|emb|CAJ54363.1| transcription elongation factor greA [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 157

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/153 (42%), Positives = 108/153 (70%), Gaps = 1/153 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           IP++ +G+  +++EL   ++ ERP +I+AI EAR  GDL ENA Y AA+E Q + E R+ 
Sbjct: 3   IPISQQGYQNLEKELDRLKK-ERPAVIQAIKEAREEGDLKENAGYDAARERQGMLEARIN 61

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            +E+ + +  +IDI+T+SGD+  FGATV++ + +SG++K + ++G  EAD   G +SI S
Sbjct: 62  YIESRMAQFNIIDITTLSGDKAIFGATVTVEDIDSGERKEFTLLGPDEADYTKGSISIQS 121

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+ RAL+GK++GD ++V+ P G  +YEI+ + +
Sbjct: 122 PVGRALLGKKVGDELTVDVPRGRISYEIIDIQF 154


>gi|315638220|ref|ZP_07893402.1| transcription elongation factor GreA [Campylobacter upsaliensis
           JV21]
 gi|315481756|gb|EFU72378.1| transcription elongation factor GreA [Campylobacter upsaliensis
           JV21]
          Length = 161

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 105/156 (67%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K  ++S GF+K+  EL+  +  +RP ++  I  AR++GDL ENAEY AA+E Q L E 
Sbjct: 1   MEKEAMSSFGFEKLNAELKDLKDNQRPAVVVEIDVARSHGDLKENAEYHAAREKQALIES 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AEL  I++RA+VID ++   D + FG++V +++  S  +  Y +VG  E+D++ G +S
Sbjct: 61  RIAELGGILSRAQVIDPASYPHDSVKFGSSVLIMDLESEKESKYTLVGTCESDLEKGYIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SP+ARA++GK+ GD   V  P GE  +EI+ + +
Sbjct: 121 IASPLARAMLGKKEGDEFKVRLPKGESEFEIISIAY 156


>gi|256829409|ref|YP_003158137.1| transcription elongation factor GreA [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578585|gb|ACU89721.1| transcription elongation factor GreA [Desulfomicrobium baculatum
           DSM 4028]
          Length = 162

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 107/157 (68%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++IP++ +GF ++++EL   ++ ERP II+AI EAR  GDL ENA Y AA+E Q + E 
Sbjct: 1   MNRIPISVEGFKRLEKELEDLKK-ERPAIIQAIKEAREEGDLRENAGYDAARERQGMLEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R++ +E+ + R EVIDI T+  DR  FGATV++ +  + ++K Y ++G  EAD   G +S
Sbjct: 60  RISHIESRMIRFEVIDIDTLQSDRAVFGATVTVEDVETEERKTYTLLGADEADHTKGTIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ RAL+GK+ GD ISV  P G   YE++ V ++
Sbjct: 120 IESPVGRALLGKQEGDEISVQVPKGRVDYEVISVSFL 156


>gi|152992894|ref|YP_001358615.1| transcription elongation factor GreA [Sulfurovum sp. NBC37-1]
 gi|166201123|sp|A6Q9U9|GREA_SULNB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|151424755|dbj|BAF72258.1| transcription elongation factor GreA [Sulfurovum sp. NBC37-1]
          Length = 162

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 76/156 (48%), Positives = 110/156 (70%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+  + + K+ +EL   +  ER  I K I EAR  GDL ENAEY AAK+ Q L E 
Sbjct: 1   MQKEPMLEETYRKLSEELEQLKSVERGVIAKVIDEARELGDLKENAEYHAAKDKQGLMEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AEL +++ RA+V+D ST S DR++FG+TV LV++++ ++  Y IVG QE++ QSGL+S
Sbjct: 61  RIAELTDVVGRAQVVDPSTFSHDRVSFGSTVVLVDQDTDEEVRYTIVGGQESNPQSGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+AR LIGKE GD + +  P G+KTY+I ++L+
Sbjct: 121 IQSPMARVLIGKEEGDEVELTLPSGKKTYDIEEILY 156


>gi|238783101|ref|ZP_04627127.1| Transcription elongation factor greB [Yersinia bercovieri ATCC
           43970]
 gi|238715897|gb|EEQ07883.1| Transcription elongation factor greB [Yersinia bercovieri ATCC
           43970]
          Length = 165

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + +EL +  +EERP + +A+SEA A GD SENAEY   K+     +
Sbjct: 1   MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +V+D       ++ FGA V +  +    +  +++VG  E D     +
Sbjct: 61  RRVRFLTKRLEVLKVVDPDPRQEGKVFFGAWVRVENEAEEQRI-FRLVGPDEFDPAKKWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D ++V  P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156


>gi|253998948|ref|YP_003051011.1| transcription elongation factor GreB [Methylovorus sp. SIP3-4]
 gi|253985627|gb|ACT50484.1| transcription elongation factor GreB [Methylovorus sp. SIP3-4]
          Length = 169

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 87/159 (54%), Gaps = 2/159 (1%)

Query: 1   MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M D K  +T +G+  ++ E     + ERP+++  +S A + GD SEN +Y   K      
Sbjct: 6   MADQKNYITPEGYATLKAEFEQLYKIERPKVVSDVSWAASNGDRSENGDYIYGKRRLRQI 65

Query: 60  EGRMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           + R+  L   +  A ++D       +++ FGA VSL       + +Y+IVG  E D   G
Sbjct: 66  DSRLRFLMKSMDLAVIVDPKEQQSLEKVFFGAWVSLYSLERDIEHHYRIVGQNELDPTRG 125

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +S  SP+ARA++GK++GD++    P GE++YEI+ + +
Sbjct: 126 YISWISPLARAMLGKQIGDVVRAQTPAGEESYEIIDIRY 164


>gi|261250302|ref|ZP_05942878.1| transcription elongation factor GreA [Vibrio orientalis CIP 102891]
 gi|260939418|gb|EEX95404.1| transcription elongation factor GreA [Vibrio orientalis CIP 102891]
          Length = 157

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 67/158 (42%), Positives = 115/158 (72%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G  +++ EL    +  RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTLRGEQQLRVELDRLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M    ++ FG+TV+L++ ++ ++K YQIVGD EA++++G +
Sbjct: 60  QIRDIEYKLSVAQVIDVTKMDNSGKVIFGSTVTLIDCDTEEEKTYQIVGDDEANIKAGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR LIGK  GD + ++ PGG++ +EI +V ++
Sbjct: 120 SVSSPIARGLIGKMEGDEVVISTPGGDRDFEIDRVEYL 157


>gi|170765496|ref|ZP_02900307.1| transcription elongation factor GreA [Escherichia albertii TW07627]
 gi|170124642|gb|EDS93573.1| transcription elongation factor GreA [Escherichia albertii TW07627]
          Length = 158

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 68/146 (46%), Positives = 105/146 (71%), Gaps = 1/146 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ M  + R+ FGATV+++  +S +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
           S++SPIAR LIGKE  D++ +  PGG
Sbjct: 121 SVNSPIARGLIGKEEDDVVVIKTPGG 146


>gi|323144905|ref|ZP_08079468.1| transcription elongation factor GreA [Succinatimonas hippei YIT
           12066]
 gi|322415303|gb|EFY06074.1| transcription elongation factor GreA [Succinatimonas hippei YIT
           12066]
          Length = 191

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/161 (40%), Positives = 108/161 (67%), Gaps = 5/161 (3%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++ P+T++G   +++EL   +  ERPRI+ AI+EAR++GDLSENAEY AAKE Q L E 
Sbjct: 29  MEQTPMTARGEMLLRKELERLKLVERPRIVAAIAEARSHGDLSENAEYDAAKEEQGLCEA 88

Query: 62  RMAELENIITRAEVID-----ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
           R+ ++E  +  A +ID      +  +  ++ FG TV++++ ++  +  Y+IVG+ EAD+Q
Sbjct: 89  RIKDIEAKLATANIIDVTKLKPAGGAPLKVVFGCTVTVIDVDTDKEVTYKIVGEDEADIQ 148

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S L+S  +PIA+ L+GK  GD   +N P G+ TYEI ++ +
Sbjct: 149 SNLISYKTPIAKGLLGKIEGDEAQINIPRGQVTYEIAEIKY 189


>gi|138896117|ref|YP_001126570.1| transcription elongation factor GreA [Geobacillus
           thermodenitrificans NG80-2]
 gi|196249010|ref|ZP_03147710.1| transcription elongation factor GreA [Geobacillus sp. G11MC16]
 gi|166200664|sp|A4IR71|GREA_GEOTN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|134267630|gb|ABO67825.1| Transcription elongation factor [Geobacillus thermodenitrificans
           NG80-2]
 gi|196211886|gb|EDY06645.1| transcription elongation factor GreA [Geobacillus sp. G11MC16]
          Length = 158

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 96/154 (62%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +G +K++QEL + +  +R  +++ I  AR +GDLSEN+EY AAK+ Q   E R
Sbjct: 5   KQYPMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVESR 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  LE +I  A +I+    + D ++ G +V+ +E   G+++ Y IVG  EAD   G +S 
Sbjct: 65  IQMLETMIRNAVIIEEDKENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISN 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SPIA++LIG  +GD ++V  PGGE   +I+ V 
Sbjct: 125 DSPIAKSLIGHRVGDEVTVQTPGGEMLVKIVAVK 158


>gi|254797022|ref|YP_003081859.1| transcription elongation factor GreA [Neorickettsia risticii str.
           Illinois]
 gi|254590253|gb|ACT69615.1| transcription elongation factor GreA [Neorickettsia risticii str.
           Illinois]
          Length = 157

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 112/156 (71%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T +G+ K+Q+EL    +  +P +I A+++AR  GDLSENAEY  A++ Q+  EG
Sbjct: 1   MRKLPITREGYCKLQEELEKLVKVVKPSVIAAVAQARELGDLSENAEYHEARKEQSFVEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++ EL+  ++ AEVID+S  +G+R+ FGA+V+L    +     YQIVG+ E+D++ G +S
Sbjct: 61  KIRELQLHLSEAEVIDVSQFTGERVKFGASVTLENMENESVLVYQIVGNLESDIKEGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +SSPI +A++ KE+G+I+ ++ P G+KTY+IL V +
Sbjct: 121 VSSPIGKAVMNKEVGEIVEIDLPSGKKTYKILGVEF 156


>gi|150009350|ref|YP_001304093.1| transcription elongation factor GreA [Parabacteroides distasonis
           ATCC 8503]
 gi|255016202|ref|ZP_05288328.1| transcription elongation factor GreA [Bacteroides sp. 2_1_7]
 gi|256842355|ref|ZP_05547858.1| transcription elongation factor GreB [Parabacteroides sp. D13]
 gi|262384735|ref|ZP_06077868.1| transcription elongation factor GreA [Bacteroides sp. 2_1_33B]
 gi|298377865|ref|ZP_06987815.1| transcription elongation factor GreA [Bacteroides sp. 3_1_19]
 gi|301312256|ref|ZP_07218173.1| transcription elongation factor GreA [Bacteroides sp. 20_3]
 gi|149937774|gb|ABR44471.1| transcription elongation factor GreA [Parabacteroides distasonis
           ATCC 8503]
 gi|256735962|gb|EEU49293.1| transcription elongation factor GreB [Parabacteroides sp. D13]
 gi|262293716|gb|EEY81651.1| transcription elongation factor GreA [Bacteroides sp. 2_1_33B]
 gi|298265311|gb|EFI06974.1| transcription elongation factor GreA [Bacteroides sp. 3_1_19]
 gi|300829678|gb|EFK60331.1| transcription elongation factor GreA [Bacteroides sp. 20_3]
          Length = 156

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 58/150 (38%), Positives = 94/150 (62%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T  G+DKI  E+ + +  +RP I   I+EAR  GDLSENAEY AAKE Q + E ++A+
Sbjct: 5   YMTKDGYDKILAEINYLETVKRPEISAQIAEARDKGDLSENAEYDAAKEAQGIMEAKLAQ 64

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ +I+ A +ID S +  D +     V +    +     Y +V D EA+++ G +S+S+P
Sbjct: 65  LKGLISNARLIDESRVKTDEVQILNKVKIKNTKNNAVMTYTLVSDSEANLKEGKISVSTP 124

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+GK++GD++ +  P G  T+EI+ +
Sbjct: 125 IAQGLMGKKVGDVVEIRVPSGLMTFEIMDI 154


>gi|56421082|ref|YP_148400.1| transcription elongation factor GreA [Geobacillus kaustophilus
           HTA426]
 gi|261418437|ref|YP_003252119.1| transcription elongation factor GreA [Geobacillus sp. Y412MC61]
 gi|297529289|ref|YP_003670564.1| GreA/GreB family elongation factor [Geobacillus sp. C56-T3]
 gi|319767603|ref|YP_004133104.1| transcription elongation factor GreA [Geobacillus sp. Y412MC52]
 gi|81346788|sp|Q5KWV4|GREA_GEOKA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|56380924|dbj|BAD76832.1| transcription elongation factor [Geobacillus kaustophilus HTA426]
 gi|261374894|gb|ACX77637.1| transcription elongation factor GreA [Geobacillus sp. Y412MC61]
 gi|297252541|gb|ADI25987.1| GreA/GreB family elongation factor [Geobacillus sp. C56-T3]
 gi|317112469|gb|ADU94961.1| transcription elongation factor GreA [Geobacillus sp. Y412MC52]
          Length = 158

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 98/154 (63%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +G +K++QEL + +  +R  +++ I  AR +GDLSEN+EY AAK+ Q   E R
Sbjct: 5   KQYPMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVESR 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  LEN+I  A +I+    + D ++ G +V+ +E   G+++ Y IVG  EAD   G +S 
Sbjct: 65  IQMLENMIRNAVIIEEDKENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISN 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SPIA++L+G+ +GD ++V  PGGE   +I+ V 
Sbjct: 125 DSPIAKSLLGRRVGDEVTVQTPGGEMLVKIVAVK 158


>gi|242308872|ref|ZP_04808027.1| transcription elongation factor GreA [Helicobacter pullorum MIT
           98-5489]
 gi|239524536|gb|EEQ64402.1| transcription elongation factor GreA [Helicobacter pullorum MIT
           98-5489]
          Length = 159

 Score =  141 bits (354), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 63/152 (41%), Positives = 102/152 (67%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T  G++K+  EL+  ++ ERP  IK I  AR +GDL ENAEY AA+E Q   + R+ E
Sbjct: 3   PMTEYGYNKLISELKNLKEVERPNNIKEIDAAREHGDLKENAEYHAARERQLFLDARINE 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A VID ST++ D+++FG+T++L +  S ++  Y IVG  E++   GL+S  SP
Sbjct: 63  LTQLVAEARVIDPSTINHDKVSFGSTITLEDLESEEQFCYTIVGATESNPDKGLISYHSP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +A+ L+GK +GD ++++ P G+  YEIL++ +
Sbjct: 123 LAKQLLGKVVGDEVTISLPKGKVDYEILEICY 154


>gi|326336154|ref|ZP_08202326.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691663|gb|EGD33630.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 156

 Score =  140 bits (353), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 93/155 (60%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +     T +G   ++ EL   +  ERPR  +AI+EAR  GDLSENAEY AAKE Q L E 
Sbjct: 1   MKVAYYTEEGLKALKAELDQLRDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLEL 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++A+LE ++  A VID S +   ++   +TV L  K +     Y +V + EAD+++G +S
Sbjct: 61  KIAKLEELVANARVIDESQLDTSKVLILSTVKLKNKANNAIMTYTLVAESEADLKAGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +SSPI R L+GK +GDI  +  P G    EI+++ 
Sbjct: 121 VSSPIGRGLLGKSVGDIAEIKVPNGVLQMEIIEIK 155


>gi|325925177|ref|ZP_08186590.1| transcription elongation factor GreA [Xanthomonas perforans 91-118]
 gi|325544431|gb|EGD15801.1| transcription elongation factor GreA [Xanthomonas perforans 91-118]
          Length = 154

 Score =  140 bits (353), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 76/153 (49%), Positives = 117/153 (76%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +TSKG  ++++EL   +  +RP +I AI+EARA+GDL ENAEY AA+E Q+  EGR+ +L
Sbjct: 1   MTSKGAQRLREELEHLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60

Query: 67  ENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E+ ++ AE+IDI+   +G +I FGATV+L +  + ++K YQIVGD EAD++ GL++ISSP
Sbjct: 61  ESELSHAEIIDITKLSAGTKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +ARALIGK  GD ++++AP G++ YE++ V ++
Sbjct: 121 LARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 153


>gi|260576249|ref|ZP_05844241.1| transcription elongation factor GreA [Rhodobacter sp. SW2]
 gi|259021517|gb|EEW24821.1| transcription elongation factor GreA [Rhodobacter sp. SW2]
          Length = 151

 Score =  140 bits (353), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 78/152 (51%), Positives = 115/152 (75%), Gaps = 1/152 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  GF  +  EL+  +  ERP +I+AI+EARA+GDLSENAEY AA+E Q+  EGR+ EL
Sbjct: 1   MTRGGFVALDDELKLLKSVERPAVIRAIAEARAHGDLSENAEYHAAREKQSFIEGRIKEL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E II+RAEVID + +S   I FGATV+LV++++ +++ YQIVG+ EA+++ G ++I SP+
Sbjct: 61  EAIISRAEVIDPAKLS-GAIKFGATVTLVDEDTNEERTYQIVGEPEANIEGGFLNIRSPL 119

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ARALIGK  GD + V  PGG+++YE+L + ++
Sbjct: 120 ARALIGKAEGDSVDVKTPGGQRSYEVLSIRFV 151


>gi|238765202|ref|ZP_04626133.1| Transcription elongation factor greB [Yersinia kristensenii ATCC
           33638]
 gi|238696585|gb|EEP89371.1| Transcription elongation factor greB [Yersinia kristensenii ATCC
           33638]
          Length = 165

 Score =  140 bits (353), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + +EL +  +EERP + +A+SEA A GD SENAEY   K+     +
Sbjct: 1   MAKSNYITREGWQALDRELHYLWREERPIVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +V+D       ++ FGA V +  ++   +  +++VG  E D     +
Sbjct: 61  RRVRFLTKRLEVLKVVDPDPRQEGKVYFGAWVRVENESEEQRI-FRLVGPDEFDPAKKWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D ++V  P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156


>gi|239995761|ref|ZP_04716285.1| Transcription elongation factor GreA [Alteromonas macleodii ATCC
           27126]
          Length = 153

 Score =  140 bits (353), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 65/153 (42%), Positives = 110/153 (71%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T++G   ++ EL   + + RPRII++I+EAR +GDL ENAEY AA+E Q+  EGR+ ++
Sbjct: 1   MTARGAQMLRDELNELKTKTRPRIIESIAEAREHGDLKENAEYHAAREQQSFCEGRIQDI 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ A++ID++ M    ++ FG TV+++  ++ ++  Y+IVGD EAD+++ L+S++SP
Sbjct: 61  EGKLSNAQIIDVTKMENTGKVIFGTTVTILNVDTDEETTYRIVGDDEADIKNNLISVNSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IAR LIGKEL D++++  P G    EI++V +I
Sbjct: 121 IARGLIGKELDDMVTIQTPAGAVEVEIIEVEYI 153


>gi|256823598|ref|YP_003147561.1| transcription elongation factor GreA [Kangiella koreensis DSM
           16069]
 gi|256797137|gb|ACV27793.1| transcription elongation factor GreA [Kangiella koreensis DSM
           16069]
          Length = 160

 Score =  140 bits (353), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 69/160 (43%), Positives = 115/160 (71%), Gaps = 3/160 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++++P+T +G + +Q EL   ++ +RP+++ AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MNRVPMTVEGAEALQTELNELKKVKRPQVVAAIAEAREHGDLKENAEYHAAREQQGFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSL--VEKNSGDKKNYQIVGDQEADVQSG 118
           R+ E+E  ++ ++++D++ +S + ++ FG+TV L  ++ N+ D+  Y+IVGD EAD++  
Sbjct: 61  RIQEIEAKLSNSQIVDVTKISNNGKVIFGSTVILINMDDNNADEVQYKIVGDDEADIKKN 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            +SI+SPIAR LIGKE GDI ++  P G   YEI +VL++
Sbjct: 121 KLSINSPIARGLIGKEEGDIANIQTPKGSVEYEIAEVLYL 160


>gi|22127785|ref|NP_671208.1| transcription elongation factor GreB [Yersinia pestis KIM 10]
 gi|45439998|ref|NP_991537.1| transcription elongation factor GreB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51598055|ref|YP_072246.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
           IP 32953]
 gi|108809325|ref|YP_653241.1| transcription elongation factor GreB [Yersinia pestis Antiqua]
 gi|108814090|ref|YP_649857.1| transcription elongation factor GreB [Yersinia pestis Nepal516]
 gi|145597385|ref|YP_001161460.1| transcription elongation factor GreB [Yersinia pestis Pestoides F]
 gi|150260817|ref|ZP_01917545.1| transcription elongation factor [Yersinia pestis CA88-4125]
 gi|165928050|ref|ZP_02223882.1| transcription elongation factor GreB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165936194|ref|ZP_02224763.1| transcription elongation factor GreB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010458|ref|ZP_02231356.1| transcription elongation factor GreB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213294|ref|ZP_02239329.1| transcription elongation factor GreB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399683|ref|ZP_02305207.1| transcription elongation factor GreB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167418839|ref|ZP_02310592.1| transcription elongation factor GreB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425709|ref|ZP_02317462.1| transcription elongation factor GreB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468694|ref|ZP_02333398.1| transcription elongation factor GreB [Yersinia pestis FV-1]
 gi|170022432|ref|YP_001718937.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
           YPIII]
 gi|186897255|ref|YP_001874367.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
           PB1/+]
 gi|218927346|ref|YP_002345221.1| transcription elongation factor GreB [Yersinia pestis CO92]
 gi|229836384|ref|ZP_04456551.1| transcription elongation factor [Yersinia pestis Pestoides A]
 gi|229839991|ref|ZP_04460150.1| transcription elongation factor [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842072|ref|ZP_04462227.1| transcription elongation factor [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229904627|ref|ZP_04519738.1| transcription elongation factor [Yersinia pestis Nepal516]
 gi|270488160|ref|ZP_06205234.1| transcription elongation factor GreB [Yersinia pestis KIM D27]
 gi|294502225|ref|YP_003566287.1| transcription elongation factor GreB [Yersinia pestis Z176003]
 gi|25452997|sp|Q8ZJH2|GREB_YERPE RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|21960914|gb|AAM87459.1|AE013996_4 transcription elongation factor [Yersinia pestis KIM 10]
 gi|45434853|gb|AAS60414.1| transcription elongation factor [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51591337|emb|CAH23003.1| transcription elongation factor [Yersinia pseudotuberculosis IP
           32953]
 gi|108777738|gb|ABG20257.1| transcription elongation factor GreB [Yersinia pestis Nepal516]
 gi|108781238|gb|ABG15296.1| transcription elongation factor GreB [Yersinia pestis Antiqua]
 gi|115345957|emb|CAL18821.1| transcription elongation factor [Yersinia pestis CO92]
 gi|145209081|gb|ABP38488.1| transcription elongation factor GreB [Yersinia pestis Pestoides F]
 gi|149290225|gb|EDM40302.1| transcription elongation factor [Yersinia pestis CA88-4125]
 gi|165915808|gb|EDR34416.1| transcription elongation factor GreB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919999|gb|EDR37300.1| transcription elongation factor GreB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990548|gb|EDR42849.1| transcription elongation factor GreB [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205592|gb|EDR50072.1| transcription elongation factor GreB [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166962833|gb|EDR58854.1| transcription elongation factor GreB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052187|gb|EDR63595.1| transcription elongation factor GreB [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055399|gb|EDR65193.1| transcription elongation factor GreB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169748966|gb|ACA66484.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
           YPIII]
 gi|186700281|gb|ACC90910.1| transcription elongation factor GreB [Yersinia pseudotuberculosis
           PB1/+]
 gi|229678745|gb|EEO74850.1| transcription elongation factor [Yersinia pestis Nepal516]
 gi|229690382|gb|EEO82436.1| transcription elongation factor [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696357|gb|EEO86404.1| transcription elongation factor [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229706452|gb|EEO92459.1| transcription elongation factor [Yersinia pestis Pestoides A]
 gi|262360304|gb|ACY57025.1| transcription elongation factor GreB [Yersinia pestis D106004]
 gi|262364255|gb|ACY60812.1| transcription elongation factor GreB [Yersinia pestis D182038]
 gi|270336664|gb|EFA47441.1| transcription elongation factor GreB [Yersinia pestis KIM D27]
 gi|294352684|gb|ADE63025.1| transcription elongation factor GreB [Yersinia pestis Z176003]
 gi|320013271|gb|ADV96842.1| transcription elongation factor [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 171

 Score =  140 bits (353), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + +EL +  +EERP + +A+SEA A GD SENAEY   K+     +
Sbjct: 1   MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V +  +    +  +++VG  E D     +
Sbjct: 61  RRVRFLAKRLEVLKIVDPDPRQEGKVFFGAWVRVENEQEEQRI-FRLVGPDEFDPAKKWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D ++V  P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156


>gi|254284149|ref|ZP_04959117.1| GreA/GreB family elongation factor [gamma proteobacterium NOR51-B]
 gi|219680352|gb|EED36701.1| GreA/GreB family elongation factor [gamma proteobacterium NOR51-B]
          Length = 153

 Score =  140 bits (353), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 69/153 (45%), Positives = 108/153 (70%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T++G   +++EL   ++ +RPRI +AI+EAR +GDL ENAEY AA+E Q+  EGR+ ++
Sbjct: 1   MTAEGERALREELERLKKVDRPRITQAIAEAREHGDLKENAEYHAAREQQSFAEGRIKDI 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E+ ++ A+VID+S ++   ++ FG TV L+  +      Y+IVG+ EADV++ ++S+ SP
Sbjct: 61  EHKLSHAQVIDVSAIAHTGKVIFGTTVDLINLDDDSTVTYRIVGEDEADVRNNMISVGSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IARAL+GK  GD + V APGG+  YEI QV  +
Sbjct: 121 IARALVGKSEGDEVVVRAPGGDICYEIDQVRHV 153


>gi|188025404|ref|ZP_02958495.2| hypothetical protein PROSTU_00233 [Providencia stuartii ATCC 25827]
 gi|188023657|gb|EDU61697.1| hypothetical protein PROSTU_00233 [Providencia stuartii ATCC 25827]
          Length = 164

 Score =  140 bits (353), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 94/157 (59%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   + +T +G+D + +EL++  +EERPR+ +++SEA A GD SENAEY   K+     +
Sbjct: 4   MNKSLLITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 63

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   + +  +++       R+ FGA V L + N   +  +++VG  E +     +
Sbjct: 64  RRVRFLSKRLDQLRIVEPDPRQEGRVFFGAWVKLEDDNENIRI-FRLVGADEFNPSKNWI 122

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+GK++ D I+VN PGG  TY +L++ +
Sbjct: 123 SIDSPVARALVGKQVDDEITVNTPGGRVTYTVLEISY 159


>gi|242280745|ref|YP_002992874.1| transcription elongation factor GreA [Desulfovibrio salexigens DSM
           2638]
 gi|259647639|sp|C6BRV2|GREA_DESAD RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|242123639|gb|ACS81335.1| transcription elongation factor GreA [Desulfovibrio salexigens DSM
           2638]
          Length = 160

 Score =  140 bits (353), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 108/156 (69%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP++ +GF KI+ EL   ++ ERP +IKAI+EAR  GDL EN  Y AA+E Q + E 
Sbjct: 1   MSTIPISKEGFAKIKAELASLKK-ERPEVIKAIAEAREEGDLKENGGYHAARERQGMLEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++  +E+ I +  V+D++T+ G++I FGATV+L + ++G +K Y I+G  E+D + G++S
Sbjct: 60  KINYIESRIPQFNVVDMTTLGGEKITFGATVTLEDIDTGAEKTYTIMGPDESDFKKGIIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ +AL+GK  GD + VNAP G+  Y I+ V++
Sbjct: 120 IESPVGKALLGKIEGDEVVVNAPKGKIEYGIVSVIF 155


>gi|301165527|emb|CBW25098.1| transcription elongation factor greA [Bacteriovorax marinus SJ]
          Length = 158

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 105/158 (66%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M ++ P+T +G+DK+Q EL    + ER  +   I+EAR  GDL ENAEY +AKE Q++ E
Sbjct: 1   MSNETPITKEGYDKVQAELDHLIKVEREELKTTIAEARELGDLKENAEYHSAKEKQSVVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ +L+ +I  A+VID  T+S D+I FGATV+L+     +   Y+IVG+ E++++ G +
Sbjct: 61  GRIMQLQGVIANAQVIDPKTVSTDKIVFGATVTLLNVEEDETVVYKIVGEIESNMKEGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S  SP+ +A+IGKE GD + V AP G+  YE+    +I
Sbjct: 121 SYKSPLGKAVIGKEEGDTVIVKAPKGDIEYEVESFEYI 158


>gi|229163328|ref|ZP_04291280.1| Transcription elongation factor greA [Bacillus cereus R309803]
 gi|228620109|gb|EEK76983.1| Transcription elongation factor greA [Bacillus cereus R309803]
          Length = 186

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 97/158 (61%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++ EL   +  +R  +++ I  AR++GDLSEN+EY AAK+ Q  
Sbjct: 4   MATEKTYPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAF 63

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN+I  A +I  +      +  G TV+  E   GD+++Y IVG  EAD   G
Sbjct: 64  VEGRITQLENMIRNAVIITDNGEESTVVTLGKTVTFKELPGGDEESYTIVGSAEADPFEG 123

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 124 RISNDSPIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 161


>gi|238788974|ref|ZP_04632764.1| Transcription elongation factor greB [Yersinia frederiksenii ATCC
           33641]
 gi|238723001|gb|EEQ14651.1| Transcription elongation factor greB [Yersinia frederiksenii ATCC
           33641]
          Length = 165

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  +  EL +  +EERP + +A+SEA A GD SENAEY   K+     +
Sbjct: 1   MAKSNYITREGWQALDHELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V +  + +  +  +++VG  E D     +
Sbjct: 61  RRVRFLTKRLEVLKIVDPDPRQEGKVYFGAWVRVENEAAEQRI-FRLVGPDEFDPAKKWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D ++V  P GE TY IL + +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILDIRY 156


>gi|229081644|ref|ZP_04214139.1| Transcription elongation factor greA [Bacillus cereus Rock4-2]
 gi|228701648|gb|EEL54139.1| Transcription elongation factor greA [Bacillus cereus Rock4-2]
          Length = 175

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++ EL   +   R  +++ I  AR++GDLSEN+EY AAK+ Q  
Sbjct: 4   MSTEKTYPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAF 63

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN+I  A +I  +      +  G TV+  E  +GD++ Y IVG  EAD   G
Sbjct: 64  VEGRITQLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEG 123

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 124 RISNDSPIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 161


>gi|303248722|ref|ZP_07334975.1| GreA/GreB family elongation factor [Desulfovibrio fructosovorans
           JJ]
 gi|302489887|gb|EFL49815.1| GreA/GreB family elongation factor [Desulfovibrio fructosovorans
           JJ]
          Length = 162

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 105/156 (67%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +D IP+T +GF ++++EL   ++ ERP +I AI EAR  GDL ENA Y AA+E Q + E 
Sbjct: 1   MDSIPITVQGFKRLERELERLKK-ERPEVILAIKEAREEGDLRENAGYDAARERQGMLEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  +E+ + R  VID++T+ G+++ FGATV + + ++GD K Y ++G  EA+   G +S
Sbjct: 60  RINFIESRMPRFNVIDLATLDGEQVIFGATVEIEDVDTGDVKKYTLLGPDEAEPSKGSIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ +AL+GK  GD I V AP G+  YEI+ + +
Sbjct: 120 ILSPVGQALLGKYEGDEIVVEAPRGKINYEIISIAF 155


>gi|237745681|ref|ZP_04576161.1| GreA transcription elongation factor [Oxalobacter formigenes
           HOxBLS]
 gi|229377032|gb|EEO27123.1| GreA transcription elongation factor [Oxalobacter formigenes
           HOxBLS]
          Length = 158

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 82/158 (51%), Positives = 117/158 (74%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IPVT +G   +++EL   + ++R  +I AI+EAR++GDLSENAEY AAKE Q   EG
Sbjct: 1   MSSIPVTVRGAQMMREELHRLKTKDRYEVIAAIAEARSHGDLSENAEYDAAKERQAFIEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AELE  ++ A+VID +T  +  RI F ATV+L +  +G+K +YQIVG+ EAD++   +
Sbjct: 61  RIAELETKLSSAQVIDPTTLNTNGRIVFAATVALEDLETGEKVSYQIVGNDEADLKELKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI+SP+ARALIG+E GD++ VNAP G + YEIL+VL+I
Sbjct: 121 SITSPLARALIGREAGDVVEVNAPAGIREYEILEVLFI 158


>gi|261344526|ref|ZP_05972170.1| transcription elongation factor GreB [Providencia rustigianii DSM
           4541]
 gi|282567439|gb|EFB72974.1| transcription elongation factor GreB [Providencia rustigianii DSM
           4541]
          Length = 161

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   + +T +G+D + +EL++  +EERPR+ +++SEA A GD SENAEY   K+     +
Sbjct: 1   MNKSLLITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   + +  +++       R+ FGA V L + N   +  +++VG  E D     +
Sbjct: 61  RRIRFLSKRLDQLRIVEPDPRQEGRVFFGAWVKLEDDNGNIRI-FRLVGADEFDPAKQWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK + D + V+ PGG+ TY +L++ +
Sbjct: 120 SIDSPVARALIGKRVDDEVVVSTPGGQVTYFVLEISY 156


>gi|193214258|ref|YP_001995457.1| transcription elongation factor GreA [Chloroherpeton thalassium
           ATCC 35110]
 gi|238692700|sp|B3QV56|GREA_CHLT3 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|193087735|gb|ACF13010.1| transcription elongation factor GreA [Chloroherpeton thalassium
           ATCC 35110]
          Length = 158

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 99/156 (63%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M DK  +T  G++K++ EL   +   R ++++ I+EA+++GDLSENAEY+AAKE Q   E
Sbjct: 1   MSDKTYLTKGGYNKLKDELDDLKTNVRQQVLEKITEAKSHGDLSENAEYEAAKEEQAQVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R++ LE +++ A ++D   +  D++    TV L + +  ++  Y +V  +EAD ++G +
Sbjct: 61  SRISTLERVLSTATILDEKDIKTDKVYILTTVLLKDLDRDEEVEYTLVSSEEADSENGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S+ SPI + L+GK +G+I+ +  P G   YE+L + 
Sbjct: 121 SVKSPIGKNLLGKSVGEIVEIKVPKGIMRYEVLNIK 156


>gi|300726104|ref|ZP_07059561.1| transcription elongation factor GreA [Prevotella bryantii B14]
 gi|299776574|gb|EFI73127.1| transcription elongation factor GreA [Prevotella bryantii B14]
          Length = 154

 Score =  140 bits (352), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 60/152 (39%), Positives = 87/152 (57%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             ++ +G+DK+  EL+   + E PR+ +AISEAR  GDLSEN EY AAK  Q    GR+ 
Sbjct: 2   EYMSQEGYDKLVAELQHLTKVELPRVTEAISEARDKGDLSENFEYHAAKREQGRLLGRIR 61

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
             +N++  A VID S +S D +   + V L    +    NY IV   EA ++ G +SI S
Sbjct: 62  FKQNVLAHARVIDSSRLSADNVQLLSKVKLTNTGNNASMNYTIVSPHEASLKEGKISIKS 121

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA+AL+ K++GD++ V  P G     I  + 
Sbjct: 122 PIAQALLNKKVGDVVEVRVPAGLLKLRIDNIE 153


>gi|70734327|ref|YP_257967.1| transcription elongation factor GreA [Pseudomonas fluorescens Pf-5]
 gi|68348626|gb|AAY96232.1| transcription elongation factor GreA [Pseudomonas fluorescens Pf-5]
          Length = 158

 Score =  140 bits (352), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 100/158 (63%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T +G   +++E     +  RP++ + I  AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MNKYPMTVQGARALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  + VID++T+    ++ FG TV +    + +   YQIVG+ EAD++ G +
Sbjct: 61  RIRDIEGRLQNSVVIDVTTIPHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKLGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIARALI KE GD+++V  PGG   YEI++V  I
Sbjct: 121 SVGSPIARALIAKEEGDVVAVKTPGGVIEYEIVEVRHI 158


>gi|238751148|ref|ZP_04612643.1| Transcription elongation factor greB [Yersinia rohdei ATCC 43380]
 gi|238710626|gb|EEQ02849.1| Transcription elongation factor greB [Yersinia rohdei ATCC 43380]
          Length = 169

 Score =  140 bits (352), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  +  EL +  +EERP + +A+SEA A GD SENAEY   K+     +
Sbjct: 5   MSKSNYITREGWQALDTELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 64

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V +  ++   +  +++VG  E D     +
Sbjct: 65  RRVRFLTKRLEVLKIVDPDPRQEGKVYFGAWVRVENESGEQRI-FRLVGPDEFDPAKKWI 123

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D ++V  P GE  Y IL++ +
Sbjct: 124 SIDSPVARALIGKQVDDEVTVQTPNGEAIYCILEIRY 160


>gi|326796869|ref|YP_004314689.1| transcription elongation factor GreA [Marinomonas mediterranea
           MMB-1]
 gi|326547633|gb|ADZ92853.1| transcription elongation factor GreA [Marinomonas mediterranea
           MMB-1]
          Length = 158

 Score =  140 bits (352), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T +G  ++++EL   +   RPR+I  I+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKKVPMTLEGESRLREELNHLKSVVRPRVIADIAEAREHGDLKENAEYHAAREEQGFTEG 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  ++VIDI S     ++ FGATV+L   ++ +   YQIVGD EADV+   +
Sbjct: 61  RIKEIEGKLADSQVIDIKSMPHTGKVIFGATVTLYNVDTEETVTYQIVGDDEADVKQKKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S +SPIA+A+IGK   D IS+N P GE  YEI +V +I
Sbjct: 121 SYASPIAKAIIGKHEEDEISINVPSGEVVYEIEKVEYI 158


>gi|327402704|ref|YP_004343542.1| transcription elongation factor GreA [Fluviicola taffensis DSM
           16823]
 gi|327318212|gb|AEA42704.1| transcription elongation factor GreA [Fluviicola taffensis DSM
           16823]
          Length = 157

 Score =  140 bits (352), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 96/156 (61%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D    T +G  K++ EL   +  +RPRI + I+EAR  GDLSENAEY AAKE Q L E
Sbjct: 1   MSDFAYYTEEGLKKLKDELHEMKTVQRPRISEQIAEARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++++++ ++++A +ID S M   ++   + V +   N+G +  Y IV + EAD++   +
Sbjct: 61  MKISKMDALLSKARIIDNSIMDNSKVLILSCVKIKNVNNGMEMEYTIVAESEADLKLKKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           SI SPI + L+GK++GD+  V  P G   +E++ + 
Sbjct: 121 SIDSPIGKGLLGKKVGDVADVQTPNGIVKFEVMDIT 156


>gi|313157566|gb|EFR56982.1| transcription elongation factor GreA [Alistipes sp. HGB5]
          Length = 169

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 99/156 (63%), Gaps = 1/156 (0%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  +I  +T++G+ K++ EL   +  ERP I  AI+EAR  GDLSENAEY AA+E Q + 
Sbjct: 12  MAKEIIYLTAEGYKKLRDELDHMRSVERPAISAAIAEARDKGDLSENAEYDAAREAQGML 71

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A+LE+ +  A VID S +   ++   + V+L+  N+  +  Y IV + EA+++ G 
Sbjct: 72  EMRIAKLEDSLANARVIDESKIDKSKVQILSKVTLLNHNTKKEMVYTIVAEHEANLREGK 131

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           ++I +PIA+AL+G + GD + V  P G   +EIL +
Sbjct: 132 LAIGTPIAKALLGHKKGDRVDVEVPAGTIHFEILDI 167


>gi|228472777|ref|ZP_04057535.1| transcription elongation factor GreA [Capnocytophaga gingivalis
           ATCC 33624]
 gi|228275828|gb|EEK14594.1| transcription elongation factor GreA [Capnocytophaga gingivalis
           ATCC 33624]
          Length = 156

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 93/155 (60%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +     T +G   ++ EL   +  ERPR  +AI+EAR  GDLSENAEY AAKE Q L E 
Sbjct: 1   MKVAYYTEEGLKALKAELDQLRDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGLLEM 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++A+LE ++  A VID S +   ++   +TV L  K +     Y +V + EAD+++G +S
Sbjct: 61  KIAKLEELVASARVIDESQLDTSKVLILSTVKLKNKANNAVMTYTLVAESEADLKTGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +SSPI R L+GK +GDI  +  P G    EI+++ 
Sbjct: 121 VSSPIGRGLLGKSVGDIAEIKVPNGILQMEIIEIT 155


>gi|157376534|ref|YP_001475134.1| transcription elongation factor GreA [Shewanella sediminis HAW-EB3]
 gi|157318908|gb|ABV38006.1| transcription elongation factor GreA [Shewanella sediminis HAW-EB3]
          Length = 153

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 67/153 (43%), Positives = 103/153 (67%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G +++++EL + + E+RP I +AI EAR  GDL ENAEY AA+E Q L E R+ ++
Sbjct: 1   MTVVGAERLRKELDYLKFEKRPVIAQAIGEARELGDLKENAEYHAAREEQGLCEARVRDI 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++  ++ID++ M    RI FG TV+++  ++  +  Y+IVG+ EAD++  L+S+SSP
Sbjct: 61  EGKLSNVQIIDVTKMPNTGRIIFGTTVTILNIDTDVEVTYRIVGEDEADIKENLISVSSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IAR LIGK L D +++  PGG   YEI  V +I
Sbjct: 121 IARGLIGKNLDDEVNIATPGGITEYEITAVEYI 153


>gi|325922459|ref|ZP_08184226.1| transcription elongation factor GreA [Xanthomonas gardneri ATCC
           19865]
 gi|325547079|gb|EGD18166.1| transcription elongation factor GreA [Xanthomonas gardneri ATCC
           19865]
          Length = 154

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 74/153 (48%), Positives = 117/153 (76%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+KG  ++++EL   +  +RP +I AI+EARA+GDL ENAEY AA+E Q+  EGR+ +L
Sbjct: 1   MTAKGAQRLREELDQLKSVKRPAVISAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60

Query: 67  ENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ AE+IDI+   +G++I FGATV+L +  + ++K YQIVGD EAD++ G+++ISSP
Sbjct: 61  EGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGMIAISSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +ARALIGK  GD ++++AP G++ YE++ V ++
Sbjct: 121 LARALIGKLEGDSVTIDAPAGQRDYEVVSVAYL 153


>gi|325915491|ref|ZP_08177804.1| transcription elongation factor GreA [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538292|gb|EGD09975.1| transcription elongation factor GreA [Xanthomonas vesicatoria ATCC
           35937]
          Length = 154

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 74/153 (48%), Positives = 117/153 (76%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+KG  ++++EL   +  +RP +I AI+EARA+GDL ENAEY AA+E Q+  EGR+ +L
Sbjct: 1   MTAKGAQRLREELDQLKSVKRPAVIAAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60

Query: 67  ENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ AE+IDI+   +G++I FGATV+L +  + ++K YQIVGD EAD++ G+++ISSP
Sbjct: 61  EGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKLGMIAISSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +ARALIGK  GD ++++AP G++ YE++ V ++
Sbjct: 121 LARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 153


>gi|229019601|ref|ZP_04176414.1| Transcription elongation factor greA [Bacillus cereus AH1273]
 gi|229025839|ref|ZP_04182237.1| Transcription elongation factor greA [Bacillus cereus AH1272]
 gi|229032029|ref|ZP_04188012.1| Transcription elongation factor greA [Bacillus cereus AH1271]
 gi|228729274|gb|EEL80268.1| Transcription elongation factor greA [Bacillus cereus AH1271]
 gi|228735450|gb|EEL86047.1| Transcription elongation factor greA [Bacillus cereus AH1272]
 gi|228741681|gb|EEL91868.1| Transcription elongation factor greA [Bacillus cereus AH1273]
          Length = 175

 Score =  139 bits (351), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 97/158 (61%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++ EL   +  +R  +++ I  AR++GDLSEN+EY AAK+ Q  
Sbjct: 18  MATEKTYPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAF 77

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN+I  A +I  +      +  G TV+  E   GD+++Y IVG  EAD   G
Sbjct: 78  VEGRITQLENMIRNAVIITDNGEESTVVTLGKTVTFKELPGGDEESYTIVGSAEADPFEG 137

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 138 RISNDSPIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 175


>gi|30022455|ref|NP_834086.1| transcription elongation factor GreA [Bacillus cereus ATCC 14579]
 gi|296504870|ref|YP_003666570.1| transcription elongation factor GreA [Bacillus thuringiensis
           BMB171]
 gi|38372300|sp|Q817Z6|GREA_BACCR RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|29898013|gb|AAP11287.1| Transcription elongation factor greA [Bacillus cereus ATCC 14579]
 gi|296325922|gb|ADH08850.1| transcription elongation factor GreA [Bacillus thuringiensis
           BMB171]
 gi|326942161|gb|AEA18057.1| transcription elongation factor GreA [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 158

 Score =  139 bits (351), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 94/152 (61%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T +G  K++ EL   +   R  +++ I  AR++GDLSEN+EY AAK+ Q   EGR+ 
Sbjct: 7   YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LEN+I  A +I  +      +  G TV+  E  +GD++ Y IVG  EAD   G +S  S
Sbjct: 67  QLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 126

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 127 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 158


>gi|239827818|ref|YP_002950442.1| transcription elongation factor GreA [Geobacillus sp. WCH70]
 gi|239808111|gb|ACS25176.1| transcription elongation factor GreA [Geobacillus sp. WCH70]
          Length = 159

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 61/159 (38%), Positives = 101/159 (63%), Gaps = 3/159 (1%)

Query: 1   MV---DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M+    + P+T +G +K++QEL + +  +R  +++ I  AR +GDLSEN+EY AAK+ Q 
Sbjct: 1   MMANEKQFPMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQA 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
             E R+  LEN+I  A +I+  T + D ++ G +V+ +E   G+++ Y IVG  EAD   
Sbjct: 61  FVEARIQTLENMIRNAVIIEEDTENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFE 120

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           G +S  SPIA++L+G+ +G+ ++V  PGGE   +I+ V 
Sbjct: 121 GKISNDSPIAKSLLGRRVGEEVTVQTPGGEMLVKIVAVK 159


>gi|294501340|ref|YP_003565040.1| transcription elongation factor GreA [Bacillus megaterium QM B1551]
 gi|295706687|ref|YP_003599762.1| transcription elongation factor GreA [Bacillus megaterium DSM 319]
 gi|294351277|gb|ADE71606.1| transcription elongation factor GreA [Bacillus megaterium QM B1551]
 gi|294804346|gb|ADF41412.1| transcription elongation factor GreA [Bacillus megaterium DSM 319]
          Length = 158

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 102/158 (64%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++QEL + +  +R  +++ I  AR++GDLSEN+EY +AK+ Q  
Sbjct: 1   MAQEKVFPMTEEGKLKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  LEN+I  A++I+    +   ++ G +V+ VE   GD++ Y IVG  EAD   G
Sbjct: 61  VEGRITTLENMIRNAKIIEEDVENSSIVSLGKSVTFVELPDGDEETYTIVGSAEADPFEG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA++L+GK++GD ++V  PGG+ + +I+ V 
Sbjct: 121 KISNDSPIAKSLMGKQIGDQVTVQTPGGDMSVKIVSVK 158


>gi|148553363|ref|YP_001260945.1| transcription elongation factor GreA [Sphingomonas wittichii RW1]
 gi|229485908|sp|A5V3E1|GREA_SPHWW RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|148498553|gb|ABQ66807.1| transcription elongation factor GreA [Sphingomonas wittichii RW1]
          Length = 158

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 73/156 (46%), Positives = 109/156 (69%), Gaps = 2/156 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K+P+ ++G   + +EL   +  ERP II AI EARA+GDLSENAEY AAKE Q   E  
Sbjct: 5   EKLPMLAEGQKMLTEELARLKA-ERPLIIDAIEEARAHGDLSENAEYHAAKERQGQIEAS 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +A++E+ ++RA+VID S +SGD+I FGATV+L++ +      YQIVG  EAD ++G +S 
Sbjct: 64  IADIEDRLSRAQVIDPSMLSGDKIVFGATVTLLDDDEKPV-RYQIVGQTEADAKTGKISY 122

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SP+ RALIGK++ D + V  P G++ Y + ++ +I
Sbjct: 123 NSPLGRALIGKKVDDEVEVTVPSGDRFYLVSKIEFI 158


>gi|254369654|ref|ZP_04985664.1| transcriptional elongation factor [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122613|gb|EDO66742.1| transcriptional elongation factor [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 160

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 111/156 (71%), Gaps = 1/156 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D++P+T  G   ++ EL   ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR
Sbjct: 4   DRVPMTPAGKQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63

Query: 63  MAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           + ++E+ ++ A+VID++ +     + FGATV+++  ++ ++  Y+IVG+ EAD+ +  +S
Sbjct: 64  IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + +P+ARALI KE GD I+++ P G+ TYEI+ V +
Sbjct: 124 VVAPLARALIKKEEGDEITLDTPKGKVTYEIVAVEY 159


>gi|209694181|ref|YP_002262109.1| transcription elongation factor GreA [Aliivibrio salmonicida
           LFI1238]
 gi|208008132|emb|CAQ78274.1| transcription elongation factor GreA [Aliivibrio salmonicida
           LFI1238]
          Length = 157

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 108/158 (68%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK+P+T +G   ++ EL    +  RP I KAI EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MDKVPMTIRGEKLLRDELEVLLK-RRPVISKAIGEARELGDLKENAEYHAAREDQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M+   ++ FGATV+L++ ++ DK  YQIV D EA+++ G +
Sbjct: 60  QIRDIEYKLSVAQVIDVTKMTNTGKVIFGATVTLLDVDTEDKVKYQIVADDEANIKEGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK + D +S+  PGG K +EI  V +I
Sbjct: 120 SVNSPIARGLIGKLVEDEVSIRTPGGTKEFEIDAVEYI 157


>gi|225013112|ref|ZP_03703526.1| transcription elongation factor GreA [Flavobacteria bacterium
           MS024-2A]
 gi|225002770|gb|EEG40752.1| transcription elongation factor GreA [Flavobacteria bacterium
           MS024-2A]
          Length = 158

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 95/155 (61%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T +G  K++ EL   +  ERP+  +AI+EAR  GDLSENAEY AAKE Q + E
Sbjct: 1   MSKVSYYTEEGLKKLRAELNHLKDIERPKASQAIAEARDKGDLSENAEYDAAKEAQGMLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             +A++EN+++ A +I+ S +   ++   +TV +  K +G    Y +V   EAD+++G +
Sbjct: 61  MHIAKMENVLSNARIINESELDTSKVLVLSTVEVKNKVNGGSMKYTLVAQSEADLKTGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SPI + L+GK++G+I  ++ P G    E++ +
Sbjct: 121 SVDSPIGKGLLGKKVGEIAVISVPNGSIELEVISI 155


>gi|325106003|ref|YP_004275657.1| transcription elongation factor GreA [Pedobacter saltans DSM 12145]
 gi|324974851|gb|ADY53835.1| transcription elongation factor GreA [Pedobacter saltans DSM 12145]
          Length = 157

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 98/155 (63%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +    T +G + ++QEL++ + E R +I  AI+EAR  GDLSENAEY AAKE Q L+E
Sbjct: 1   MTEIAYFTKEGLENLKQELQYLKTEGRAKIANAIAEARDKGDLSENAEYDAAKEAQALHE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+LEN +  A +ID S +   ++   + V +    +G    YQ+V + EAD++SG +
Sbjct: 61  TKIAKLENTLANARLIDESKIDTTKVLALSIVKIKNVKNGATMTYQLVAENEADLKSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SPIA+ L+GK +GD   +  P G+  +EIL +
Sbjct: 121 SVKSPIAQGLLGKSVGDKAEITVPAGKMEFEILDI 155


>gi|119897715|ref|YP_932928.1| transcription elongation factor GreB [Azoarcus sp. BH72]
 gi|119670128|emb|CAL94041.1| putative transcription elongation factor [Azoarcus sp. BH72]
          Length = 222

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 90/156 (57%), Gaps = 1/156 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+D ++ EL    + ERP++++ ++ A   GD SEN +Y   K+     + R+
Sbjct: 67  KNYMTRRGYDALRTELDQLVRVERPKLVETVAWAAGNGDRSENGDYIYGKKRLREIDRRI 126

Query: 64  AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   I  AEV+D       D++ FGATV++ + +  D++ +QIVG  EA+   G +S 
Sbjct: 127 RFLIKRIESAEVVDPERQENVDQVFFGATVTITDADGEDEQTWQIVGVDEANASEGRISW 186

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            SP+ARAL+  +LG+ +   +P G +  E++ + ++
Sbjct: 187 ISPLARALLKVKLGETVRFMSPAGPREIEVVDIRYV 222


>gi|206969603|ref|ZP_03230557.1| transcription elongation factor GreA [Bacillus cereus AH1134]
 gi|206735291|gb|EDZ52459.1| transcription elongation factor GreA [Bacillus cereus AH1134]
          Length = 158

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 94/152 (61%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T +G  K++ EL   +   R  +++ I  AR++GDLSEN+EY AAK+ Q   EGR+ 
Sbjct: 7   YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LEN+I  A +I  +      +  G TV+  E  +GD++ Y IVG  EAD   G +S  S
Sbjct: 67  QLENMIRNAVIIKDTGEISTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 126

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 127 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 158


>gi|33519573|ref|NP_878405.1| transcription elongation factor GreA [Candidatus Blochmannia
           floridanus]
 gi|33517236|emb|CAD83619.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Candidatus Blochmannia floridanus]
          Length = 162

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 109/157 (69%), Gaps = 1/157 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           ++IP+T  G +K++++L + +   RP IIK ISEAR +GDL EN+EY AA+E Q   EGR
Sbjct: 6   ERIPMTQNGVEKLRKKLEYLKNVLRPEIIKNISEARKHGDLKENSEYHAAREQQGFCEGR 65

Query: 63  MAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           + E+E  ++ A +ID++      ++ FG TV + + ++  K+ Y+IVGD EA+ +  ++S
Sbjct: 66  IQEIEFKLSNAYIIDVTKVAEEQKVVFGVTVCVEKLDTQSKQVYRIVGDDEANYKKNMIS 125

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I+SPIAR LIG  +GDI+++N P G  TY+I+Q+ ++
Sbjct: 126 INSPIARGLIGNTIGDIVTINTPQGNITYKIIQIQYV 162


>gi|57242062|ref|ZP_00370002.1| transcription elongation factor Cj0287c [Campylobacter upsaliensis
           RM3195]
 gi|57017254|gb|EAL54035.1| transcription elongation factor Cj0287c [Campylobacter upsaliensis
           RM3195]
          Length = 161

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/156 (41%), Positives = 105/156 (67%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K  ++S GF+K+  EL+  +  +RP ++  I  AR++GDL ENAEY AA+E Q L E 
Sbjct: 1   MEKEAMSSFGFEKLSAELKDLKDNQRPAVVVEIDVARSHGDLKENAEYHAAREKQALIES 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AEL  I++RA+VID ++   + + FG++V +++  S  +  Y +VG  E+D++ G +S
Sbjct: 61  RIAELGGILSRAQVIDPASYEHESVKFGSSVLIMDLESEKESKYTLVGTCESDLEKGYIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SP+ARA++GK+ GD   V  P GE  +EIL V +
Sbjct: 121 IASPLARAMLGKKEGDEFKVRLPKGESEFEILSVTY 156


>gi|253827215|ref|ZP_04870100.1| transcription elongation factor [Helicobacter canadensis MIT
           98-5491]
 gi|253510621|gb|EES89280.1| transcription elongation factor [Helicobacter canadensis MIT
           98-5491]
          Length = 156

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/151 (41%), Positives = 101/151 (66%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G++K+  EL+  ++ ERP  IK I  AR +GDL ENAEY AA+E Q   + R+ EL
Sbjct: 1   MTEYGYNKLINELKNLKEVERPNNIKEIDTAREHGDLKENAEYHAARERQLFLDARINEL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
             ++  A VID ST++ D+++FG+T++L + +S ++  Y IVG  E++   GL+S  SP+
Sbjct: 61  TQLVAEARVIDPSTITHDKVSFGSTITLEDLDSEEQFCYTIVGATESNPDKGLISYHSPL 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           A+ L+GK +GD +++  P G+  YEIL++ +
Sbjct: 121 AKQLLGKVVGDEVTIQLPKGKVDYEILEICY 151


>gi|154149289|ref|YP_001406861.1| transcription elongation factor GreA [Campylobacter hominis ATCC
           BAA-381]
 gi|166200653|sp|A7I2X0|GREA_CAMHC RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|153805298|gb|ABS52305.1| transcription elongation factor GreA [Campylobacter hominis ATCC
           BAA-381]
          Length = 162

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 104/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +   P+T  G++KI  EL+  +  +RP I++ I  AR++GDL EN+EY AA+E Q   E 
Sbjct: 1   MQSEPMTLYGYEKITAELKDLKMVQRPNIVRDIDIARSHGDLKENSEYHAAREKQAFIEN 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AE+ +I++RA+VID ST   D++ FG+TV++++  +  +K Y IVG  E+D+  G ++
Sbjct: 61  RIAEISDIVSRAKVIDPSTYEHDKVKFGSTVTIMDVETELEKTYVIVGISESDISKGYIN 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I++P+AR L+GK  GD + +N P G    EI+ V +
Sbjct: 121 INTPLARQLLGKVEGDDVILNLPNGVSEIEIVSVEY 156


>gi|313471842|ref|ZP_07812334.1| transcription elongation factor GreA [Lactobacillus jensenii 1153]
 gi|313449010|gb|EEQ68245.2| transcription elongation factor GreA [Lactobacillus jensenii 1153]
          Length = 151

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/150 (41%), Positives = 96/150 (64%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G +K++ EL+  +  +RP +I+ I  AR+YGDLSEN+EY AAK+ Q+  E R+A++
Sbjct: 1   MTAAGKEKLEAELKELKLVKRPEVIERIKVARSYGDLSENSEYDAAKDEQSAVEQRIAQV 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E ++  A+VID  ++  + ++ G TV+  E    D + Y IVG  E+D  +G +S  SPI
Sbjct: 61  EQMLKYADVIDADSVDPNEVSVGKTVTYTEVGEDDPETYTIVGSDESDPLNGKISNDSPI 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
           A+AL+GK  GD +S+N PGG     I  V 
Sbjct: 121 AQALLGKHKGDTVSINTPGGSFDVVINDVK 150


>gi|319761755|ref|YP_004125692.1| transcription elongation factor greb [Alicycliphilus denitrificans
           BC]
 gi|317116316|gb|ADU98804.1| transcription elongation factor GreB [Alicycliphilus denitrificans
           BC]
          Length = 188

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+ +++ EL     EERP+++  +  A + GD SEN +Y   K+     + R+
Sbjct: 27  KNYITPQGYARLRAELLSLIDEERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86

Query: 64  AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D S  +  D+I FGATV+ V+   G ++   I+G  EAD     +S 
Sbjct: 87  RFLTKRLEIAEVVDPSVHAGSDQIFFGATVTYVDDE-GVERTVTILGVDEADNGLQQISW 145

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+    GD +S+  P G +T EIL V +
Sbjct: 146 ISPVARALLKAREGDEVSLQTPAGTRTLEILSVHY 180


>gi|188575985|ref|YP_001912914.1| transcription elongation factor GreA [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|289663383|ref|ZP_06484964.1| transcription elongation factor GreA [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289668838|ref|ZP_06489913.1| transcription elongation factor GreA [Xanthomonas campestris pv.
           musacearum NCPPB4381]
 gi|188520437|gb|ACD58382.1| transcriptional elongation factor [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 154

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/153 (49%), Positives = 117/153 (76%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +TSKG  ++++EL   +  +RP +I AI+EARA+GDL ENAEY AA+E Q+  EGR+ +L
Sbjct: 1   MTSKGALRLREELEQLKSVKRPEVINAIAEARAHGDLKENAEYHAAREQQSFIEGRIKQL 60

Query: 67  ENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ AE+IDI+   +G++I FGATV+L +  + ++K YQIVGD EAD++ GL++ISSP
Sbjct: 61  EGELSHAEIIDITKLSAGNKIVFGATVTLADTETDEEKRYQIVGDLEADIKMGLIAISSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +ARALIGK  GD ++++AP G++ YE++ V ++
Sbjct: 121 LARALIGKLEGDSVTIDAPAGQREYEVVSVAYL 153


>gi|296284018|ref|ZP_06862016.1| transcription elongation factor GreA [Citromicrobium bathyomarinum
           JL354]
          Length = 155

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 74/157 (47%), Positives = 118/157 (75%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+ ++G++++  +L+  +  ERP+I+ AI EARA+GDLSENAEY AAKE Q   E 
Sbjct: 1   MEKVPMLAEGYERLTTDLKALRA-ERPKIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++AE+E+ +TRA++ID ST+SGD++ FGATV+L++++      YQIVG  EAD +S  +S
Sbjct: 60  QIAEIEDRVTRAQIIDPSTLSGDKVVFGATVTLLDEDDKPI-KYQIVGQTEADAKSARIS 118

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            +SP+ARALIGK++G+ + V  P G+K Y + ++ +I
Sbjct: 119 YNSPLARALIGKKVGEEVEVTVPSGDKFYLVDKIEFI 155


>gi|28899240|ref|NP_798845.1| transcription elongation factor GreA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362164|ref|ZP_05775154.1| transcription elongation factor GreA [Vibrio parahaemolyticus
           K5030]
 gi|260879066|ref|ZP_05891421.1| transcription elongation factor GreA [Vibrio parahaemolyticus
           AN-5034]
 gi|260900671|ref|ZP_05909066.1| transcription elongation factor GreA [Vibrio parahaemolyticus
           AQ4037]
 gi|31076674|sp|Q87LZ2|GREA_VIBPA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|28807464|dbj|BAC60729.1| transcription elongation factor GreA [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308089586|gb|EFO39281.1| transcription elongation factor GreA [Vibrio parahaemolyticus
           AN-5034]
 gi|308110885|gb|EFO48425.1| transcription elongation factor GreA [Vibrio parahaemolyticus
           AQ4037]
 gi|308111060|gb|EFO48600.1| transcription elongation factor GreA [Vibrio parahaemolyticus
           K5030]
          Length = 157

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 113/158 (71%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G   ++ EL    +  RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTLRGEQMLRTELERLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M    ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60  QIRDIEYKLSVAQVIDVTKMENTGKVIFGSTVTLIDVDTDEEKTYQIVGDDEADIKAGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR LIGK  GD +++  PGG K +EI +V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVAIQTPGGAKDFEIDRVEYI 157


>gi|46581647|ref|YP_012455.1| transcription elongation factor GreA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601195|ref|YP_965595.1| transcription elongation factor GreA [Desulfovibrio vulgaris DP4]
 gi|81566039|sp|Q725M4|GREA_DESVH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|166200661|sp|A1V9Q2|GREA_DESVV RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|46451070|gb|AAS97715.1| transcription elongation factor GreA [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561424|gb|ABM27168.1| transcription elongation factor GreA [Desulfovibrio vulgaris DP4]
 gi|311235288|gb|ADP88142.1| GreA/GreB family elongation factor [Desulfovibrio vulgaris RCH1]
          Length = 163

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 110/157 (70%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP++ +GF ++++EL   ++ ERP +I+AI EAR  GDLSENA Y AA+E Q + E 
Sbjct: 1   MSSIPISVEGFKQLEKELDRLKK-ERPGVIQAIKEAREEGDLSENAGYDAARERQGMLEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  +E+ + +  VID+ T+SGD++ FGATV + +  SG++K Y ++G  EAD   G +S
Sbjct: 60  RIKYIESRMAQFNVIDLDTISGDKVMFGATVKIEDLESGEEKEYTLLGPDEADYAKGSIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + SP+ARA++GKE GD I V+AP G+  YEI+ + ++
Sbjct: 120 VQSPVARAMLGKEEGDEIVVDAPRGKIHYEIVSIRFL 156


>gi|330826535|ref|YP_004389838.1| transcription elongation factor GreB [Alicycliphilus denitrificans
           K601]
 gi|329311907|gb|AEB86322.1| transcription elongation factor GreB [Alicycliphilus denitrificans
           K601]
          Length = 188

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+ +++ EL     EERP+++  +  A + GD SEN +Y   K+     + R+
Sbjct: 27  KNYITPQGYARLRAELLSLIDEERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86

Query: 64  AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D S  +  D+I FGATV+ V+   G ++   I+G  EAD     +S 
Sbjct: 87  RFLTKRLEIAEVVDPSVHAGSDQIFFGATVTYVDDE-GVERTVTILGVDEADNGLQQISW 145

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+    GD +S+  P G +T EIL V +
Sbjct: 146 ISPVARALLKAREGDEVSLQTPAGTRTLEILSVHY 180


>gi|57339826|gb|AAW49900.1| hypothetical protein FTT1313 [synthetic construct]
          Length = 195

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 111/156 (71%), Gaps = 1/156 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D++P+T  G   ++ EL   ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR
Sbjct: 30  DRVPMTPAGEQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 89

Query: 63  MAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           + ++E+ ++ A+VID++ +     + FGATV+++  ++ ++  Y+IVG+ EAD+ +  +S
Sbjct: 90  IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 149

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + +P+ARALI KE GD I+++ P G+ TYEI+ V +
Sbjct: 150 VVAPLARALIKKEEGDEITLDTPKGKVTYEIVAVEY 185


>gi|126663046|ref|ZP_01734044.1| transcription elongation factor [Flavobacteria bacterium BAL38]
 gi|126624704|gb|EAZ95394.1| transcription elongation factor [Flavobacteria bacterium BAL38]
          Length = 158

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 97/156 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T++G  K++ EL   +  ERP+  +AI+EAR  GDLSENAEY AAKE Q L E
Sbjct: 1   MSTVSYYTAEGLKKLRDELDQLKSIERPKASQAIAEARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R++++E ++  A +ID S +   +    +TV +  + +G +  Y +V + EAD+++G +
Sbjct: 61  MRISKMEEVVANARLIDESQLDLSKALVLSTVKIKNQANGMEMKYTLVAESEADLKTGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S++SPI + L+GK +G++  +  P G   +++L++ 
Sbjct: 121 SVTSPIGKGLLGKSVGEVAEIIVPNGVLKFDVLEIT 156


>gi|118479541|ref|YP_896692.1| transcription elongation factor GreA [Bacillus thuringiensis str.
           Al Hakam]
 gi|190566829|ref|ZP_03019745.1| transcription elongation factor GreA [Bacillus anthracis
           Tsiankovskii-I]
 gi|196034522|ref|ZP_03101931.1| transcription elongation factor GreA [Bacillus cereus W]
 gi|196039303|ref|ZP_03106609.1| transcription elongation factor GreA [Bacillus cereus NVH0597-99]
 gi|196044918|ref|ZP_03112152.1| transcription elongation factor GreA [Bacillus cereus 03BB108]
 gi|218905574|ref|YP_002453408.1| transcription elongation factor GreA [Bacillus cereus AH820]
 gi|225866361|ref|YP_002751739.1| transcription elongation factor GreA [Bacillus cereus 03BB102]
 gi|228929424|ref|ZP_04092445.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228935700|ref|ZP_04098513.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228987631|ref|ZP_04147745.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229123920|ref|ZP_04253112.1| Transcription elongation factor greA [Bacillus cereus 95/8201]
 gi|229157995|ref|ZP_04286066.1| Transcription elongation factor greA [Bacillus cereus ATCC 4342]
 gi|229186619|ref|ZP_04313780.1| Transcription elongation factor greA [Bacillus cereus BGSC 6E1]
 gi|254684135|ref|ZP_05147995.1| transcription elongation factor GreA [Bacillus anthracis str.
           CNEVA-9066]
 gi|254721967|ref|ZP_05183756.1| transcription elongation factor GreA [Bacillus anthracis str.
           A1055]
 gi|254736482|ref|ZP_05194188.1| transcription elongation factor GreA [Bacillus anthracis str.
           Western North America USA6153]
 gi|254741520|ref|ZP_05199207.1| transcription elongation factor GreA [Bacillus anthracis str.
           Kruger B]
 gi|254750958|ref|ZP_05202997.1| transcription elongation factor GreA [Bacillus anthracis str.
           Vollum]
 gi|254757713|ref|ZP_05209740.1| transcription elongation factor GreA [Bacillus anthracis str.
           Australia 94]
 gi|300119200|ref|ZP_07056897.1| transcription elongation factor GreA [Bacillus cereus SJ1]
 gi|301055888|ref|YP_003794099.1| transcription elongation factor [Bacillus anthracis CI]
 gi|118418766|gb|ABK87185.1| transcription elongation factor GreA [Bacillus thuringiensis str.
           Al Hakam]
 gi|190561820|gb|EDV15789.1| transcription elongation factor GreA [Bacillus anthracis
           Tsiankovskii-I]
 gi|195993064|gb|EDX57023.1| transcription elongation factor GreA [Bacillus cereus W]
 gi|196024406|gb|EDX63079.1| transcription elongation factor GreA [Bacillus cereus 03BB108]
 gi|196029930|gb|EDX68531.1| transcription elongation factor GreA [Bacillus cereus NVH0597-99]
 gi|218538607|gb|ACK91005.1| transcription elongation factor GreA [Bacillus cereus AH820]
 gi|225789601|gb|ACO29818.1| transcription elongation factor GreA [Bacillus cereus 03BB102]
 gi|228596878|gb|EEK54537.1| Transcription elongation factor greA [Bacillus cereus BGSC 6E1]
 gi|228625448|gb|EEK82204.1| Transcription elongation factor greA [Bacillus cereus ATCC 4342]
 gi|228659222|gb|EEL14870.1| Transcription elongation factor greA [Bacillus cereus 95/8201]
 gi|228772091|gb|EEM20543.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228823938|gb|EEM69757.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228830212|gb|EEM75828.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|298723420|gb|EFI64165.1| transcription elongation factor GreA [Bacillus cereus SJ1]
 gi|300378057|gb|ADK06961.1| transcription elongation factor [Bacillus cereus biovar anthracis
           str. CI]
          Length = 175

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 97/158 (61%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++ EL   +  +R  +++ I  AR++GDLSEN+EY AAK+ Q  
Sbjct: 18  MATEKTYPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAF 77

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN+I  A +I  +      +  G TV+  E  +GD++ Y IVG  EAD   G
Sbjct: 78  VEGRITQLENMIRNAVIITDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEG 137

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 138 RISNDSPIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 175


>gi|56708370|ref|YP_170266.1| transcription elongation factor GreA [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89256763|ref|YP_514125.1| transcription elongation factor GreA [Francisella tularensis subsp.
           holarctica LVS]
 gi|110670840|ref|YP_667397.1| transcriptional elongation factor [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315154|ref|YP_763877.1| transcriptional elongation factor [Francisella tularensis subsp.
           holarctica OSU18]
 gi|118497261|ref|YP_898311.1| transcriptional elongation factor [Francisella tularensis subsp.
           novicida U112]
 gi|134302355|ref|YP_001122324.1| transcriptional elongation factor [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156502925|ref|YP_001428990.1| transcription elongation factor GreA [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|167010904|ref|ZP_02275835.1| transcriptional elongation factor [Francisella tularensis subsp.
           holarctica FSC200]
 gi|187931963|ref|YP_001891948.1| transcriptional elongation factor [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194323563|ref|ZP_03057340.1| transcription elongation factor GreA family protein [Francisella
           tularensis subsp. novicida FTE]
 gi|208779054|ref|ZP_03246400.1| transcription elongation factor GreA family protein [Francisella
           novicida FTG]
 gi|224457500|ref|ZP_03665973.1| transcriptional elongation factor [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254368054|ref|ZP_04984074.1| transcriptional elongation factor [Francisella tularensis subsp.
           holarctica 257]
 gi|254370993|ref|ZP_04986996.1| hypothetical protein [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254372634|ref|ZP_04988123.1| transcriptional elongation factor [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254875193|ref|ZP_05247903.1| transcriptional elongation factor [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|290954459|ref|ZP_06559080.1| transcription elongation factor GreA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312121|ref|ZP_06802932.1| transcription elongation factor GreA [Francisella tularensis subsp.
           holarctica URFT1]
 gi|81597269|sp|Q5NFC6|GREA_FRATT RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|122324847|sp|Q0BKZ4|GREA_FRATO RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|123094496|sp|Q2A2C7|GREA_FRATH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|123359419|sp|Q14GS9|GREA_FRAT1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|259647642|sp|A7NDI1|GREA_FRATF RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|259647643|sp|B2SDF5|GREA_FRATM RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|259647644|sp|A0Q5P2|GREA_FRATN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|259647645|sp|A4IZ52|GREA_FRATW RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|54113791|gb|AAV29529.1| NT02FT0408 [synthetic construct]
 gi|56604862|emb|CAG45946.1| transcriptional elongation factor [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144594|emb|CAJ79913.1| transcriptional elongation factor [Francisella tularensis subsp.
           holarctica LVS]
 gi|110321173|emb|CAL09329.1| transcriptional elongation factor [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115130053|gb|ABI83240.1| transcription elongation factor GreA [Francisella tularensis subsp.
           holarctica OSU18]
 gi|118423167|gb|ABK89557.1| transcriptional elongation factor [Francisella novicida U112]
 gi|134050132|gb|ABO47203.1| transcriptional elongation factor [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134253864|gb|EBA52958.1| transcriptional elongation factor [Francisella tularensis subsp.
           holarctica 257]
 gi|151569234|gb|EDN34888.1| hypothetical protein FTBG_01615 [Francisella tularensis subsp.
           tularensis FSC033]
 gi|151570361|gb|EDN36015.1| transcriptional elongation factor [Francisella novicida GA99-3549]
 gi|156253528|gb|ABU62034.1| transcriptional elongation factor, GreA/GreB family protein
           [Francisella tularensis subsp. holarctica FTNF002-00]
 gi|187712872|gb|ACD31169.1| transcriptional elongation factor [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|194322418|gb|EDX19899.1| transcription elongation factor GreA family protein [Francisella
           tularensis subsp. novicida FTE]
 gi|208744854|gb|EDZ91152.1| transcription elongation factor GreA family protein [Francisella
           novicida FTG]
 gi|254841192|gb|EET19628.1| transcriptional elongation factor [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159989|gb|ADA79380.1| transcriptional elongation factor [Francisella tularensis subsp.
           tularensis NE061598]
 gi|328676750|gb|AEB27620.1| Transcription elongation factor GreA [Francisella cf. novicida Fx1]
          Length = 160

 Score =  139 bits (349), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 111/156 (71%), Gaps = 1/156 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D++P+T  G   ++ EL   ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR
Sbjct: 4   DRVPMTPAGEQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63

Query: 63  MAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           + ++E+ ++ A+VID++ +     + FGATV+++  ++ ++  Y+IVG+ EAD+ +  +S
Sbjct: 64  IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + +P+ARALI KE GD I+++ P G+ TYEI+ V +
Sbjct: 124 VVAPLARALIKKEEGDEITLDTPKGKVTYEIVAVEY 159


>gi|330958059|gb|EGH58319.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 158

 Score =  139 bits (349), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G   +++EL    +  RP++ + I  AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MIKYPMTVQGARALEEELAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A VID++T+    ++ FG TV +    + ++  YQIVG+ EAD++ G +
Sbjct: 61  RIRDIEGRMQNAVVIDVTTIEPTGKVIFGTTVEIANVETDERVTYQIVGEDEADIKKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIARALI KE GD++ V  P G   YEI++V  I
Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158


>gi|315303245|ref|ZP_07873892.1| transcription elongation factor GreA [Listeria ivanovii FSL F6-596]
 gi|313628385|gb|EFR96871.1| transcription elongation factor GreA [Listeria ivanovii FSL F6-596]
          Length = 175

 Score =  139 bits (349), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
            +K+ P+T  G  K++ EL+  +  +R  +++ I  AR++GDLSEN+EY +AK+ Q   E
Sbjct: 18  TEKVFPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVE 77

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+  +EN+I  A++ID +      +  G TV+ VE   G ++ Y IVG  EAD   G +
Sbjct: 78  GRITTIENMIRNAQIIDAAEAHNGLVTLGNTVTFVELPDGVEETYTIVGSAEADPFEGKI 137

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPIA+ L+G + G+ +++  P G+ + +I ++ 
Sbjct: 138 SNDSPIAKGLLGHKEGEEVTIQTPAGDMSVKIQKIT 173


>gi|89889854|ref|ZP_01201365.1| transcription elongation factor, GreA/GreB [Flavobacteria bacterium
           BBFL7]
 gi|89518127|gb|EAS20783.1| transcription elongation factor, GreA/GreB [Flavobacteria bacterium
           BBFL7]
          Length = 158

 Score =  139 bits (349), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 61/155 (39%), Positives = 97/155 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +    T +GF K++ EL+  +  ERPR  +AI+EAR  GDLSENAEY AAKE Q + E
Sbjct: 1   MSNVSYYTEEGFKKLKDELKQLKDVERPRASQAIAEARDKGDLSENAEYDAAKEAQGMLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+++LE +++ A +ID S +   ++   + V +   N+    NY++V   E+D+  GL+
Sbjct: 61  MRISKLEAVVSNARIIDESDLDLSKVLIHSNVKIKNLNNKMVMNYKLVAQSESDITKGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SPI +AL+GKE+G++     P G    EI+++
Sbjct: 121 SVDSPIGKALLGKEVGEVAEAVVPVGTIKLEIMEI 155


>gi|319651649|ref|ZP_08005776.1| transcription elongation factor GreA [Bacillus sp. 2_A_57_CT2]
 gi|317396716|gb|EFV77427.1| transcription elongation factor GreA [Bacillus sp. 2_A_57_CT2]
          Length = 158

 Score =  139 bits (349), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/156 (42%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
            +K+ P+T  G +K++QEL + +  +R  +++ I  AR++GDLSEN+EY +AKE Q   E
Sbjct: 3   TEKVFPMTQAGKEKLEQELEYLKSVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVE 62

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+  LEN+I  A++I    M+GD +  G +V+ VE   GD++ Y IVG  EAD   G +
Sbjct: 63  GRITTLENMIRNAKIIQEEEMAGDIVGLGRSVTFVELPDGDEETYTIVGSAEADPFEGKI 122

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPIA++LIG+ +GD ++V  PGGE    I+ + 
Sbjct: 123 SNDSPIAKSLIGRTVGDEVTVQTPGGEMNVRIVSIK 158


>gi|114778233|ref|ZP_01453105.1| transcription elongation factor GreA [Mariprofundus ferrooxydans
           PV-1]
 gi|114551480|gb|EAU54035.1| transcription elongation factor GreA [Mariprofundus ferrooxydans
           PV-1]
          Length = 157

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/157 (49%), Positives = 118/157 (75%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++++P+T KG ++++Q L + + E+R +I+  I  ARA+GDLSENAEY AAKE Q +NEG
Sbjct: 1   MERVPMTKKGAEELKQLLAYLKGEKRHQIVSTIESARAHGDLSENAEYHAAKEEQGMNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ++E+ + RA VID +T+  +++ FGATV L++ N G +  YQIVG  EAD++ G+VS
Sbjct: 61  RITDIEDKLARAHVIDPATIKAEKVVFGATVELIDVNQGTEVTYQIVGVDEADIEKGMVS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I+SPIARA+IGKE GD+  V APGGE+ +EI  + ++
Sbjct: 121 ITSPIARAMIGKEEGDLAVVQAPGGEREFEIQAIEYV 157


>gi|212638597|ref|YP_002315117.1| transcription elongation factor GreA [Anoxybacillus flavithermus
           WK1]
 gi|212560077|gb|ACJ33132.1| Transcription elongation factor GreA [Anoxybacillus flavithermus
           WK1]
          Length = 161

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 102/156 (65%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  + P+T  G +K++QEL + +  +R  +++ I  AR++GDLSEN+EY AAK+ Q   E
Sbjct: 6   MEKEYPMTKAGKEKLEQELEYLKTVKRKEVVERIQIARSFGDLSENSEYDAAKDEQAFVE 65

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LEN+I  A++I+    S D ++ G TV+ VE   G++++Y IVG  EAD   G +
Sbjct: 66  SRIQMLENMIRNAKIIEEDLESTDIVSLGRTVTFVELPDGEEESYTIVGSAEADPFEGKI 125

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPIA++LIG+ +G+ ++V+ PGG+   +I+ V 
Sbjct: 126 SNDSPIAKSLIGRRVGEEVTVHTPGGDMVVKIIAVK 161


>gi|313902255|ref|ZP_07835661.1| transcription elongation factor GreA [Thermaerobacter subterraneus
           DSM 13965]
 gi|313467485|gb|EFR62993.1| transcription elongation factor GreA [Thermaerobacter subterraneus
           DSM 13965]
          Length = 159

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 97/156 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  ++ ++++G  K+++EL++ +  +R  + + I +AR +GD+SEN+EY+ AK  Q   E
Sbjct: 1   MDKELLLSAEGLRKLEEELQYLKSVKRREVAQRIKQAREFGDISENSEYEEAKNEQAFVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE ++  A +++   +   ++  G+TV L + ++G++  Y IVG  EAD  +  +
Sbjct: 61  GRIIELEKMLRNARIVNDDEIDPTKVNIGSTVYLKDVDTGEEVQYTIVGSNEADPAALRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SP+ +AL G  +GD++ V  P G   YEI+++ 
Sbjct: 121 SYQSPVGKALFGHSVGDVVEVKVPAGTLRYEIVRIE 156


>gi|330807473|ref|YP_004351935.1| transcription elongation factor [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327375581|gb|AEA66931.1| Transcription elongation factor [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 160

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K P+T +G   +++E  +  + ERPR+ +AI EAR  GDL ENAEY AA+E Q + E R+
Sbjct: 5   KYPMTVQGAKALEEEHAFLTKVERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARV 64

Query: 64  AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
            ++E  +  A +ID++T+    ++ FG TV +    + +   YQIVG+ EAD++ G +S+
Sbjct: 65  RDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVTYQIVGEDEADIKLGKISV 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            SPIARALI KE GD++ V  PGG   YEI++V  I
Sbjct: 125 GSPIARALIAKEEGDVVVVKTPGGVIEYEIVEVRHI 160


>gi|294341373|emb|CAZ89790.1| Transcription elongation factor greB (Transcript cleavage factor
           greB) [Thiomonas sp. 3As]
          Length = 188

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 85/155 (54%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+ +++ EL+   ++ERP++++ +S A   GD SEN +Y   K+     + R+
Sbjct: 31  KNYLTPQGYARLRAELKTLVEDERPKVVETVSWAAKNGDRSENGDYIYGKKRLREIDRRI 90

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D S     D++ FGATV   +     +    IVG  E +   G +S 
Sbjct: 91  RFLTKRLDIAEVVDASLQHGNDQVFFGATVRYADDKGA-EHTITIVGIDETEPLQGKISW 149

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+    GD +S+  PGG  T EIL+V +
Sbjct: 150 ISPVARALLKAREGDSVSLPTPGGIATLEILEVTY 184


>gi|312892424|ref|ZP_07751919.1| GreA/GreB family elongation factor [Mucilaginibacter paludis DSM
           18603]
 gi|311295208|gb|EFQ72382.1| GreA/GreB family elongation factor [Mucilaginibacter paludis DSM
           18603]
          Length = 157

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 101/155 (65%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D    T +G +K+++EL++ +   R  I  AI+EAR  GDLSENAEY AAK+ Q  +E
Sbjct: 1   MADVAYYTKEGLEKLKEELQYLKTTGRQIISNAIAEARDKGDLSENAEYDAAKDAQGHHE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+LE  ++ A ++D S +   ++   + V +    +G   +YQ+V + EAD++SG +
Sbjct: 61  AKIAKLEEAMSNARLLDDSKLDLSKVLALSIVKIKNLKNGATMSYQLVSESEADLKSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S +SPIA+ L+GK++G++I +  P G+  +EIL++
Sbjct: 121 STASPIAKGLLGKKVGEVIEITVPAGKIDFEILEI 155


>gi|228902907|ref|ZP_04067048.1| Transcription elongation factor greA [Bacillus thuringiensis IBL
           4222]
 gi|228856691|gb|EEN01210.1| Transcription elongation factor greA [Bacillus thuringiensis IBL
           4222]
          Length = 161

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 94/152 (61%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T +G  K++ EL   +   R  +++ I  AR++GDLSEN+EY AAK+ Q   EGR+ 
Sbjct: 10  YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LEN+I  A +I  +      +  G TV+  E  +GD++ Y IVG  EAD   G +S  S
Sbjct: 70  QLENMIRNAVIIKDNGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 129

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 130 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 161


>gi|87200244|ref|YP_497501.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
           DSM 12444]
 gi|123722531|sp|Q2G656|GREA_NOVAD RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|87135925|gb|ABD26667.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 158

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/156 (47%), Positives = 115/156 (73%), Gaps = 2/156 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K+P+ ++G++K+  EL+  + EERPRI+ AI EARA+GDLSENAEY AAKE Q   E  
Sbjct: 5   EKLPMLAEGYEKLTAELKALR-EERPRIVDAIEEARAHGDLSENAEYHAAKERQGQVEAT 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +A+LE+ ++RA++ID +T+SGD+I FGATV+L++ +      YQIVG  EAD + G++S 
Sbjct: 64  IADLEDRVSRAQIIDPTTLSGDKIIFGATVTLLDDDEKPV-KYQIVGPYEADAKKGMISY 122

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SP+ +ALIG+++ + I V  P G+K Y + ++ +I
Sbjct: 123 NSPLGKALIGRKVDEEIEVTVPSGDKFYLVQKIEFI 158


>gi|238797302|ref|ZP_04640803.1| Transcription elongation factor greB [Yersinia mollaretii ATCC
           43969]
 gi|238718939|gb|EEQ10754.1| Transcription elongation factor greB [Yersinia mollaretii ATCC
           43969]
          Length = 169

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + +EL +  +EERP +  A+SEA A GD SENAEY   K+     +
Sbjct: 1   MAKSNYITREGWQALDRELHYLWREERPVVTLAVSEAAAMGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +V+D       ++ FGA V +  +    +  +++VG  E D     +
Sbjct: 61  RRVRFLTKRLEVLKVVDPDPRQEGKVFFGAWVRVENEAEEQRI-FRLVGPDEFDPAKKWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D ++V  P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVDDEVTVQTPNGEATYWILEIRY 156


>gi|228954664|ref|ZP_04116687.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228981071|ref|ZP_04141372.1| Transcription elongation factor greA [Bacillus thuringiensis Bt407]
 gi|228778612|gb|EEM26878.1| Transcription elongation factor greA [Bacillus thuringiensis Bt407]
 gi|228804991|gb|EEM51587.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 161

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 94/152 (61%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T +G  K++ EL   +   R  +++ I  AR++GDLSEN+EY AAK+ Q   EGR+ 
Sbjct: 10  YPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LEN+I  A +I  +      +  G TV+  E  +GD++ Y IVG  EAD   G +S  S
Sbjct: 70  QLENMIRNAVIIKDTGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 129

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 130 PIAKSLLGKQIGEKVTIQTPGGEMQVEIVSVK 161


>gi|162451849|ref|YP_001614216.1| hypothetical protein sce3576 [Sorangium cellulosum 'So ce 56']
 gi|161162431|emb|CAN93736.1| unnamed protein product [Sorangium cellulosum 'So ce 56']
          Length = 157

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D   +T  G  ++ +EL   +  ERPR+++ +++A A GD SENAEY   K+     +
Sbjct: 1   MSDPAYITPSGARRLSEELARLRSVERPRVVQEVADAAAQGDRSENAEYIYGKKKLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            RM  L   + +A V+D S   GD++ FGATV + +++   ++ YQIVG+ E D  +G +
Sbjct: 61  RRMHYLTKRLEKAVVVDPSEQRGDKVFFGATVEIEDEDGA-RRTYQIVGEDEIDSAAGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S  SP+ R+L+GK  GD+I+V  P GE   E++ V +
Sbjct: 120 SWRSPVGRSLLGKRAGDVITVRRPAGEAEMELISVRY 156


>gi|254374096|ref|ZP_04989578.1| transcriptional elongation factor [Francisella novicida GA99-3548]
 gi|151571816|gb|EDN37470.1| transcriptional elongation factor [Francisella novicida GA99-3548]
          Length = 160

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 110/156 (70%), Gaps = 1/156 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D++P+T  G   ++ EL   ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR
Sbjct: 4   DRVPMTPAGEQALRAELDKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63

Query: 63  MAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           + ++E+ ++ A+VID++ +     + FGATV+++  ++ ++  Y+IVG+ EAD+ +  +S
Sbjct: 64  IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETTYKIVGEDEADIDNQKIS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + +P+ARALI KE GD I+++ P G  TYEI+ V +
Sbjct: 124 VVAPLARALIKKEEGDEITLDTPKGRVTYEIVAVEY 159


>gi|33592252|ref|NP_879896.1| transcription elongation factor GreB [Bordetella pertussis Tohama
           I]
 gi|33595908|ref|NP_883551.1| transcription elongation factor GreB [Bordetella parapertussis
           12822]
 gi|33601290|ref|NP_888850.1| transcription elongation factor GreB [Bordetella bronchiseptica
           RB50]
 gi|33565987|emb|CAE36540.1| transcription elongation factor [Bordetella parapertussis]
 gi|33571897|emb|CAE41415.1| transcription elongation factor [Bordetella pertussis Tohama I]
 gi|33575726|emb|CAE32803.1| transcription elongation factor [Bordetella bronchiseptica RB50]
 gi|332381670|gb|AEE66517.1| transcription elongation factor GreB [Bordetella pertussis CS]
          Length = 184

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 80/154 (51%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T +G+ +++ EL      ERP +++ +S A + GD SEN +Y   K+     + RM
Sbjct: 28  RNYMTPQGYARLRDELSHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRM 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D +        F     L    +G+++   IVG  EA+  +G +S  
Sbjct: 88  RFLTKRLDIAEVVDPAAQPNRDQVFFGATVLYMDRAGEERTVTIVGVDEAEPLAGKISWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL     GD +++  PGG +  EIL+V +
Sbjct: 148 SPVARALTKAHEGDTVTLRTPGGVEELEILEVRY 181


>gi|302185422|ref|ZP_07262095.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           syringae 642]
          Length = 158

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G   +++EL    +  RP++ + I  AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MIKYPMTVQGARALEEELTHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A VID++T+    ++ FG TV +    + +   YQIVG+ EAD++ G +
Sbjct: 61  RIRDIEGRMQNAVVIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIARALI KE GD++ V  P G   YEI++V  I
Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158


>gi|190574174|ref|YP_001972019.1| transcription elongation factor GreA [Stenotrophomonas maltophilia
           K279a]
 gi|190012096|emb|CAQ45718.1| putative transcription elongation factor [Stenotrophomonas
           maltophilia K279a]
          Length = 158

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 75/154 (48%), Positives = 113/154 (73%), Gaps = 1/154 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T KG  K++ EL   +  +RP++I AI+EAR +GDL ENAEY AA+E Q   EGR+ +
Sbjct: 4   PITMKGAQKLRDELDHLKSVKRPKVIAAIAEAREHGDLKENAEYHAAREEQGFIEGRIKQ 63

Query: 66  LENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           LE  ++ AE+ID+S   +G ++ FGA+V+L +  + ++K YQIVGD EAD++ GL++ISS
Sbjct: 64  LEGELSHAEIIDVSKLNAGSKVVFGASVTLADVETDEEKKYQIVGDLEADIKQGLIAISS 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           P+ARA+IGK  GD I ++AP G++ YEI+ V ++
Sbjct: 124 PVARAMIGKLEGDSIVIDAPAGQREYEIVSVSYV 157


>gi|289434776|ref|YP_003464648.1| transcription elongation factor GreA [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171020|emb|CBH27562.1| transcription elongation factor GreA [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|313637769|gb|EFS03123.1| transcription elongation factor GreA [Listeria seeligeri FSL
           S4-171]
          Length = 160

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
            +K+ P+T  G  K++ EL+  +  +R  +++ I  AR++GDLSEN+EY +AK+ Q   E
Sbjct: 3   TEKVFPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVE 62

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+  +EN+I  A++ID +      +  G TV+ VE   G+++ Y IVG  EAD   G +
Sbjct: 63  GRITTIENMIRNAQIIDAAESHNGLVTLGNTVTFVELPDGEEETYTIVGSAEADPFEGKI 122

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPIA+ L+G + G+ +++  P G+   +I ++ 
Sbjct: 123 SNDSPIAKGLLGHKEGEEVTIQTPAGDMNVKIEKIT 158


>gi|194365590|ref|YP_002028200.1| transcription elongation factor GreA [Stenotrophomonas maltophilia
           R551-3]
 gi|194348394|gb|ACF51517.1| transcription elongation factor GreA [Stenotrophomonas maltophilia
           R551-3]
          Length = 158

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/154 (48%), Positives = 113/154 (73%), Gaps = 1/154 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T KG  K++ EL   +  +RP++I AI+EAR +GDL ENAEY AA+E Q   EGR+ +
Sbjct: 4   PITMKGAQKLRDELDHLKSVKRPKVIAAIAEAREHGDLKENAEYHAAREEQGFIEGRIKQ 63

Query: 66  LENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           LE  ++ AE+ID+S   +G ++ FGA+V+L +  + +++ YQIVGD EAD++ GL++ISS
Sbjct: 64  LEGELSHAEIIDVSKLNAGSKVVFGASVTLADVETDEERKYQIVGDLEADIKQGLIAISS 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           P+ARA+IGK  GD I ++AP G++ YEI+ V ++
Sbjct: 124 PVARAMIGKLEGDSIVIDAPAGQREYEIVSVSYL 157


>gi|328675796|gb|AEB28471.1| Transcription elongation factor GreA [Francisella cf. novicida
           3523]
          Length = 160

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 112/156 (71%), Gaps = 1/156 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D++P+T  G   ++ EL   ++ ERP II+AI+EAR +GDL ENAEY AA+E Q + EGR
Sbjct: 4   DRVPMTPAGEQALRAELEKLKKIERPAIIEAIAEARDHGDLKENAEYHAARERQGIIEGR 63

Query: 63  MAELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           + ++E+ ++ A+VID++ +     + FGATV+++  ++ ++  Y+IVG+ EAD+ +  +S
Sbjct: 64  IKDIESKLSNAQVIDVTKIQANGMVIFGATVTIMNVDTEEETIYKIVGEDEADIDNNKIS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +++P+ARALI KE GD +S++ P G+ TYEI+ V +
Sbjct: 124 VAAPLARALIKKEEGDEVSLDTPKGKVTYEIVAVEY 159


>gi|237752951|ref|ZP_04583431.1| transcription elongation factor GreA [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375218|gb|EEO25309.1| transcription elongation factor GreA [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 159

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 99/153 (64%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T  G++K+  EL+  ++ ERP  I  I  AR +GDL ENAEY AA+E Q   + R+ 
Sbjct: 2   EPMTEYGYNKLITELKNLKEVERPNNIIEIDTAREHGDLKENAEYHAARERQLFLDARIN 61

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           EL  ++  A VID +T+  D+++FG+T++L + ++ +   Y IVG  E++ + GL+S  S
Sbjct: 62  ELTQLVAEARVIDPATLPHDKVSFGSTITLEDLDTEENYTYTIVGATESNPEKGLISYHS 121

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+A+ L+GK +GD ++V  P G   YEIL++ +
Sbjct: 122 PLAKQLLGKIVGDEVAVTLPKGRVDYEILEITY 154


>gi|167754137|ref|ZP_02426264.1| hypothetical protein ALIPUT_02430 [Alistipes putredinis DSM 17216]
 gi|167658762|gb|EDS02892.1| hypothetical protein ALIPUT_02430 [Alistipes putredinis DSM 17216]
          Length = 158

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 100/156 (64%), Gaps = 1/156 (0%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  +I  +T++G+ K++ EL   +  ERP I  AI+EAR  GDLSENAEY AA+E Q L 
Sbjct: 1   MAKEIIYLTAEGYKKLKDELDHMRSVERPAISAAIAEARDKGDLSENAEYDAAREAQGLL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E+ I  A +ID S +   ++   + V+L+  N+G +  Y IV + EA+++ G 
Sbjct: 61  EMRIAKMEDTIANARIIDESKVDKSKVQILSRVTLLNHNTGKEVIYTIVAEHEANLREGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           ++I +PIA+AL+G + GD + V  P G   +EIL +
Sbjct: 121 LAIGTPIAKALLGHKKGDRVDVTVPAGTIHFEILDI 156


>gi|229141116|ref|ZP_04269658.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST26]
 gi|229198506|ref|ZP_04325210.1| Transcription elongation factor greA [Bacillus cereus m1293]
 gi|228585009|gb|EEK43123.1| Transcription elongation factor greA [Bacillus cereus m1293]
 gi|228642394|gb|EEK98683.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST26]
 gi|324328283|gb|ADY23543.1| transcription elongation factor GreA [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 175

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++ EL   +  +R  +++ I  AR++GDLSEN+EY AAK+ Q  
Sbjct: 18  MATEKTYPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAF 77

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN+I  A +I  +      +  G TV+  E   GD++ Y IVG  EAD   G
Sbjct: 78  VEGRITQLENMIRNAVIITDNGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEG 137

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 138 RISNDSPIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 175


>gi|124006704|ref|ZP_01691535.1| transcription elongation factor GreA [Microscilla marina ATCC
           23134]
 gi|123987612|gb|EAY27312.1| transcription elongation factor GreA [Microscilla marina ATCC
           23134]
          Length = 157

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 95/156 (60%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T +G  K++ EL+  + + R  +   I+EAR  GDLSENAEY AAK+ Q L E
Sbjct: 1   MAKVSYYTKEGLKKLKDELQHLKTKGRADMAYQIAEARDKGDLSENAEYDAAKDAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+LE+ +  A +ID S +   +++  +TV +  +       Y +V ++EA+++ G +
Sbjct: 61  LKIAKLEDTVANARIIDESNIDTSKVSILSTVKIKHQKLKKVLTYTLVSEEEANLKEGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S+ SP+ + L+GK++G++  V+ P G+  +EIL++ 
Sbjct: 121 SVQSPVGKGLLGKKVGEVAEVHTPAGKTDFEILEIT 156


>gi|212634061|ref|YP_002310586.1| transcription elongation factor GreA [Shewanella piezotolerans WP3]
 gi|212555545|gb|ACJ27999.1| Prokaryotic transcription elongation factor GreA [Shewanella
           piezotolerans WP3]
          Length = 153

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/153 (43%), Positives = 105/153 (68%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G +++++EL   + E RP I +AI EAR  GDL ENAEY AA+E Q L E R+ ++
Sbjct: 1   MTIIGAEQLRKELDILKFERRPAIAEAIGEARELGDLKENAEYHAAREEQGLCEARVRDI 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ A++ID++TM    R+ FG TV+++  ++ ++  Y+IVG+ EA+V+  L+S+SSP
Sbjct: 61  EGKLSHAQIIDVTTMPNTGRVIFGTTVTILNIDTDEEVTYRIVGEDEANVKENLLSVSSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IAR L+GK + D IS+  PGG   +EI +V +I
Sbjct: 121 IARGLVGKSVDDEISITTPGGTSDFEITKVEYI 153


>gi|157826502|ref|YP_001495566.1| transcription elongation factor GreA [Rickettsia bellii OSU 85-389]
 gi|229485905|sp|A8GUN3|GREA_RICB8 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|157801806|gb|ABV78529.1| transcription elongation factor GreA [Rickettsia bellii OSU 85-389]
          Length = 161

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/156 (48%), Positives = 114/156 (73%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +GF+K++ EL+  +  ER ++ + I+EARA+GDLSENAEY+AA+E Q   E 
Sbjct: 1   MAKFPITDQGFEKLEHELKHLKHVERKKVSEDIAEARAHGDLSENAEYEAAREKQAFVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  LE+I  RAE+I+++ +SGD I FGATV L++  + ++  Y IVG+ EAD+    VS
Sbjct: 61  RIKHLEDITARAEIINVAKLSGDSIKFGATVVLIDDETEEEVMYHIVGEYEADITKKRVS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SPIA+ALIGK +GDI+ V  PGG K+YE++ + +
Sbjct: 121 IASPIAKALIGKSVGDIVEVMTPGGVKSYEVVTIKY 156


>gi|66047417|ref|YP_237258.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258124|gb|AAY39220.1| Prokaryotic transcription elongation factor GreA [Pseudomonas
           syringae pv. syringae B728a]
 gi|330969641|gb|EGH69707.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 158

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G   +++EL    +  RP++ + I  AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MIKYPMTVQGARALEEELTHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A +ID++T+    ++ FG TV +    + +   YQIVG+ EAD++ G +
Sbjct: 61  RIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIARALI KE GD++ V  P G   YEI++V  I
Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158


>gi|153207473|ref|ZP_01946173.1| transcription elongation factor GreA [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161831566|ref|YP_001597133.1| transcription elongation factor GreA [Coxiella burnetii RSA 331]
 gi|165918942|ref|ZP_02219028.1| transcription elongation factor GreA [Coxiella burnetii RSA 334]
 gi|120576604|gb|EAX33228.1| transcription elongation factor GreA [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161763433|gb|ABX79075.1| transcription elongation factor GreA [Coxiella burnetii RSA 331]
 gi|165917339|gb|EDR35943.1| transcription elongation factor GreA [Coxiella burnetii RSA 334]
          Length = 159

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 104/159 (65%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   IP+T  G  K++ EL   +  ERP++I AI+EARA+GDL ENAEY AA+E Q   E
Sbjct: 1   MQTIIPITVNGVTKLRTELETLKTVERPKVIAAIAEARAHGDLKENAEYHAARERQGFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           GR+ E+E  +   ++IDIS +  + ++ FGATV+L+   +  +  YQI+G  EA+++   
Sbjct: 61  GRILEIEAKLANCQIIDISQIPNEGKVIFGATVTLLNLETQTEVTYQIMGVDEANLKENK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SISSP ARA+IGK + D+I V  P G   YEI+ V ++
Sbjct: 121 ISISSPTARAMIGKYIEDVIEVTTPEGPVEYEIVDVEYL 159


>gi|330721348|gb|EGG99423.1| Transcription elongation factor GreA [gamma proteobacterium
           IMCC2047]
          Length = 158

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 74/158 (46%), Positives = 111/158 (70%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P++ +G  ++++EL   +  ERPRII+AI+EARA+GDL ENAEY AA+E Q   EG
Sbjct: 1   MNKFPMSKQGELQLREELERLKTIERPRIIEAIAEARAHGDLKENAEYHAAREEQGFTEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ A+VID++ +S   ++ FG TV L   ++ +  +YQIVG+ EAD++   +
Sbjct: 61  RIQEIEGKLSNAQVIDVTAISNTGKVIFGVTVELENIDTEEVVSYQIVGEDEADMKQRKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI+SPIAR LIGK  GD++ VN PGG   YEI+ V  +
Sbjct: 121 SITSPIARGLIGKVEGDVVGVNVPGGLVEYEIISVEHV 158


>gi|312963093|ref|ZP_07777578.1| transcription elongation factor GreA [Pseudomonas fluorescens WH6]
 gi|311282604|gb|EFQ61200.1| transcription elongation factor GreA [Pseudomonas fluorescens WH6]
          Length = 158

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 98/158 (62%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +GF  +++E     +  RP++ + I  AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MTKYPMTVQGFKALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  + VID++T+    ++ FG TV +    + +   Y IVG+ EAD + G +
Sbjct: 61  RIRDIEGRLQNSVVIDVTTIPHTGKVIFGTTVEIANVETDESVVYHIVGEDEADFKLGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SP+ARALI KE GD+++V  PGG   YEI++V  +
Sbjct: 121 SVGSPLARALIAKEEGDVVAVKTPGGVIEYEIVEVRHV 158


>gi|148284685|ref|YP_001248775.1| transcription elongation factor [Orientia tsutsugamushi str.
           Boryong]
 gi|229485768|sp|A5CE64|GREA_ORITB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|146740124|emb|CAM80312.1| transcription elongation factor [Orientia tsutsugamushi str.
           Boryong]
          Length = 159

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/157 (48%), Positives = 113/157 (71%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T KGF K++QEL+  +  ER +I   IS AR +GDLSENAEY+AAKE Q LN+ 
Sbjct: 1   MARFPITIKGFHKLEQELKHLKYVERLKITTDISTAREFGDLSENAEYKAAKERQLLNDK 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++ +LEN +  AEVI+I+ ++ + + FGA V L++ ++  +  YQIVG+ EAD+   L+S
Sbjct: 61  KIYDLENKLANAEVIEITKINSNSVKFGARVVLLDLDTEKEVVYQIVGEYEADITQNLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I+SPIA+ALIGK+ GDII V  P G + YE+L+V ++
Sbjct: 121 IASPIAQALIGKKAGDIIEVITPKGGRFYELLKVQYV 157


>gi|116872925|ref|YP_849706.1| transcription elongation factor GreA [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|123458483|sp|A0AIU5|GREA_LISW6 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|116741803|emb|CAK20927.1| transcription elongation factor GreA [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 160

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 96/156 (61%), Gaps = 1/156 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
            +K+ P+T +G  K++ EL+  +  +R  +++ I  AR++GDLSEN+EY +AK+ Q   E
Sbjct: 3   TEKVFPMTLEGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVE 62

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+  +EN+I  A++ID +      +  G TV+ +E   G+++ Y IVG  EAD   G +
Sbjct: 63  GRITTIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKI 122

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPIA+ L+G + G+ +++  P G+   +I ++ 
Sbjct: 123 SNDSPIAKGLLGHKEGEEVTIQTPAGDMNVKIEKIT 158


>gi|291534723|emb|CBL07835.1| transcription elongation factor GreA [Roseburia intestinalis M50/1]
 gi|291540500|emb|CBL13611.1| transcription elongation factor GreA [Roseburia intestinalis XB6B4]
          Length = 159

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 93/155 (60%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K  +T +G  K++ EL   +   R  + + I EAR  GDLSENAEY AAK+ Q   E
Sbjct: 1   MDKKNILTYEGLKKLEDELENLKVVRRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ ELE I+  AEV+       D+++ G +V +++    ++  Y+IVG  EA+   G +
Sbjct: 61  ARIEELEKILKNAEVVVEEEADLDKVSIGCSVKILDCEFDEELEYKIVGSTEANSLKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SP+ +AL+GK++GD ++V  P GE +Y++L +
Sbjct: 121 SNESPVGKALLGKQVGDTVTVETPAGEFSYKVLSI 155


>gi|238792874|ref|ZP_04636504.1| Transcription elongation factor greB [Yersinia intermedia ATCC
           29909]
 gi|238727728|gb|EEQ19252.1| Transcription elongation factor greB [Yersinia intermedia ATCC
           29909]
          Length = 165

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + +EL +  +EERP + +A+SEA A GD SENAEY   K+     +
Sbjct: 1   MAKSNYITREGWQALDRELHYLWREERPVVTQAVSEAAAMGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +V+D       ++ FGA V +  +    +  +++VG  E D     +
Sbjct: 61  RRVRFLTKRLEVLKVVDPDPRQEGKVFFGAWVRVENELEEQRI-FRLVGPDEFDPAKKWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D ++V  P GE TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVEDEVTVQTPNGEATYWILEIRY 156


>gi|284008800|emb|CBA75550.1| transcription elongation factor [Arsenophonus nasoniae]
          Length = 160

 Score =  138 bits (347), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 95/156 (60%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K+++EL++  +EERP++ +A+SEA A GD SENAEY   K+     + 
Sbjct: 1   MKNNYITREGWNKLEKELKFLWREERPKVTQAVSEAAALGDRSENAEYIYGKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D       R+ FGA V + ++N   K  +++VG  E +     +S
Sbjct: 61  RIRFLSKRLEILKIVDPDPRQEGRVYFGAWVKVQDENGVIKV-FRLVGADEFNPIKKWIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+SP+AR L+GK++ D ++VN P G  TY IL++ +
Sbjct: 120 INSPVARELLGKQIDDEVTVNTPNGIITYWILEINY 155


>gi|317406344|gb|EFV86575.1| transcription elongation factor [Achromobacter xylosoxidans C54]
          Length = 183

 Score =  138 bits (347), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+++++ EL      ERP +++ +S A + GD SEN +Y   K+     + RM
Sbjct: 28  KNYMTPEGYERLRGELTHLMNVERPAVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRM 87

Query: 64  AELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D  +  + D++ FGATV   +K   D     IVG  EA+  +G +S 
Sbjct: 88  RFLTKRLDIAEVVDPAAQPNRDQVFFGATVLYSDKAGED-HTVTIVGVDEAEPLAGKISW 146

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARALI    GD + +  PGG +  +IL+V +
Sbjct: 147 ISPVARALIKAREGDTVVLRTPGGIEELDILEVRY 181


>gi|189184202|ref|YP_001937987.1| GreA protein [Orientia tsutsugamushi str. Ikeda]
 gi|238692019|sp|B3CTQ6|GREA_ORITI RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|189180973|dbj|BAG40753.1| GreA protein [Orientia tsutsugamushi str. Ikeda]
          Length = 159

 Score =  138 bits (347), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 76/157 (48%), Positives = 114/157 (72%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T KGF K++QEL+  +  ER +I   IS AR +GDLSENAEY+AAKE Q LN+ 
Sbjct: 1   MARFPITIKGFHKLEQELKHLKYVERLKITTDISTAREFGDLSENAEYKAAKERQLLNDK 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++ +LEN +  AEVI+I+ ++ + + FGA V L+++++  +  YQIVG+ EAD+   L+S
Sbjct: 61  KIYDLENKLANAEVIEITKINSNSVKFGARVVLLDRDTEKEVVYQIVGEYEADITQNLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I+SPIA+ALIGK+ GDII V  P G + YE+L+V ++
Sbjct: 121 IASPIAQALIGKKAGDIIEVITPKGGRFYELLKVQYV 157


>gi|149921005|ref|ZP_01909465.1| transcription elongation factor GreA [Plesiocystis pacifica SIR-1]
 gi|149818137|gb|EDM77593.1| transcription elongation factor GreA [Plesiocystis pacifica SIR-1]
          Length = 155

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/151 (43%), Positives = 104/151 (68%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G  K++ ELR  ++ +RP+ +  I  A  +GDL ENAEY AAKE Q     RMA L
Sbjct: 1   MTPAGLQKLRDELRNIKEVQRPQNVADIETALGHGDLRENAEYHAAKERQAELAARMAYL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E+ I+ A+VID + M+ +++AFGATV+L++ ++ ++  Y +VG+ E +V++G +SI++PI
Sbjct: 61  ESHISLAQVIDPAEMNSNKVAFGATVTLMDADTEEEVVYCLVGEDETNVKAGKISITAPI 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+GKE GD  +V  P G + +EI+ V +
Sbjct: 121 ARALLGKEAGDDATVRLPKGTRDFEIINVEY 151


>gi|283778813|ref|YP_003369568.1| transcription elongation factor GreA [Pirellula staleyi DSM 6068]
 gi|283437266|gb|ADB15708.1| transcription elongation factor GreA [Pirellula staleyi DSM 6068]
          Length = 164

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 102/157 (64%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D IP+T +G+ K++ EL   +  + P I + I++ARA GDL ENAEY A +E Q L +
Sbjct: 1   MDDYIPMTREGYAKLKAELDRMENVDMPDITQKIADARAEGDLKENAEYHAQREAQGLLQ 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++  + N +++A +ID STM  D+++FG TV + + +  +++ + +VG  E D  +G +
Sbjct: 61  AKINLIRNKLSKASIIDPSTMPRDQVSFGTTVLVKDIDMDEEEEFTLVGAGEEDYNAGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            I+SP+ +AL+GK++GD++ V AP G    EIL + +
Sbjct: 121 LITSPLGQALVGKKIGDVVDVPAPKGSYQLEILTLKF 157


>gi|150026396|ref|YP_001297222.1| transcription elongation factor GreA [Flavobacterium psychrophilum
           JIP02/86]
 gi|166200662|sp|A6H247|GREA_FLAPJ RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|149772937|emb|CAL44421.1| Transcription elongation factor GreA [Flavobacterium psychrophilum
           JIP02/86]
          Length = 158

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 95/156 (60%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T++G  K++ EL   +  ERP+    I+EAR  GDLSENAEY AAKE Q L E
Sbjct: 1   MSTVSYYTAEGLKKLKDELEQLKAIERPKASADIAEARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++ ++E + + A +ID S +   +    + V +  +++G + +Y +V + EAD+++G +
Sbjct: 61  LKIKKMEEVYSNARLIDESQLDVSKALVLSHVKIKNQSNGMEMSYHLVAESEADLKTGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S++SPI + L+GK +G+I  +  P G   +E+L++ 
Sbjct: 121 SVTSPIGKGLLGKSVGEIAEITVPNGILKFEVLEIT 156


>gi|289522343|ref|ZP_06439197.1| transcription elongation factor GreA [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289504179|gb|EFD25343.1| transcription elongation factor GreA [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 164

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 93/154 (60%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D I +T +G+ K++ EL   + E R  I + + EAR++GDLSENAEY AAKE Q   E R
Sbjct: 10  DVILMTREGYQKLRAELIKLRSEGRSEISQQLEEARSFGDLSENAEYHAAKEAQAKLEAR 69

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + +LE  +++A+VI+   +   ++  G  V+L + +   +  Y IV  +E D  +  +S+
Sbjct: 70  IQQLETQLSKAKVIENDQIDTSQVTLGTKVTLKDLDLNREFTYVIVNSEETDPNNHKISV 129

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           SSP+ +A+IGK +GD +   AP G +  +IL + 
Sbjct: 130 SSPVGQAIIGKSVGDEVIARAPRGVRRLKILNIE 163


>gi|325982789|ref|YP_004295191.1| transcription elongation factor GreB [Nitrosomonas sp. AL212]
 gi|325532308|gb|ADZ27029.1| transcription elongation factor GreB [Nitrosomonas sp. AL212]
          Length = 182

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 87/155 (56%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ E     + +RP ++K I+ A + GD SEN +Y   K+     + R+
Sbjct: 26  KNYITPDGYQRLRDEFDQLWKVDRPELVKTITWAASNGDRSENGDYIYGKKRLREIDRRL 85

Query: 64  AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AE++D S      ++ FGATV++    +  K+ Y IVG  EA+   G +S 
Sbjct: 86  RFLSRRLDSAEIVDPSQRGECHQVFFGATVTVCNAQNE-KQTYSIVGMDEAEPGCGRISW 144

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+A+AL+    GD+++++ PGG +  E+++V +
Sbjct: 145 ISPLAKALLKAHEGDVVTLHTPGGVEELEVIEVHY 179


>gi|295399312|ref|ZP_06809294.1| GreA/GreB family elongation factor [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312110127|ref|YP_003988443.1| transcription elongation factor GreA [Geobacillus sp. Y4.1MC1]
 gi|294978778|gb|EFG54374.1| GreA/GreB family elongation factor [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311215228|gb|ADP73832.1| transcription elongation factor GreA [Geobacillus sp. Y4.1MC1]
          Length = 158

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 99/154 (64%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +G +K++QEL + +  +R  +++ I  AR +GDLSEN+EY AAK+ Q   E R
Sbjct: 5   KQYPMTKEGKEKLEQELEYLKTVKRKEVVERIKIARGFGDLSENSEYDAAKDEQAFVEAR 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  LEN+I  A +I+  T + D ++ G +V+ +E   G+++ Y IVG  EAD   G +S 
Sbjct: 65  IQTLENMIRNAIIIEEDTENPDVVSLGKSVTFIELPDGEEETYTIVGSAEADPFEGKISN 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SPIA++L+G+ +G+ ++V  PGGE   +I+ V 
Sbjct: 125 DSPIAKSLLGRRVGEEVTVQTPGGEMLVKIVAVK 158


>gi|81428983|ref|YP_395983.1| transcription elongation factor GreA [Lactobacillus sakei subsp.
           sakei 23K]
 gi|78610625|emb|CAI55676.1| Transcription elongation factor GreA (Transcriptcleavage factor
           GreA) [Lactobacillus sakei subsp. sakei 23K]
          Length = 157

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 103/157 (65%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  K  P+T++G + + +EL   +  +RP +I  I  AR++GDLSEN+EY++AK+ Q+  
Sbjct: 1   MAQKKFPMTAEGKENLAKELENLKMVKRPEVIDRIKIARSFGDLSENSEYESAKDEQSSL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ E+EN++  AEVID+  ++ D IA G TVS  +   G+++ YQIVG  E+D  +G 
Sbjct: 61  ETRIVEVENMLRFAEVIDVDNIAVDEIAVGKTVSFTDDEDGEEETYQIVGAAESDPFNGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK +GD + V  PGG+    I +V 
Sbjct: 121 ISNDSPIAQALVGKHVGDKVVVQTPGGDMHVTITEVK 157


>gi|289676014|ref|ZP_06496904.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           syringae FF5]
 gi|330937936|gb|EGH41723.1| transcription elongation factor GreA [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330981080|gb|EGH79183.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 158

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G   +++EL    +  RP++ + I  AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MIKYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A +ID++T+    ++ FG TV +    + +   YQIVG+ EAD++ G +
Sbjct: 61  RIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIARALI KE GD++ V  P G   YEI++V  I
Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIVEVRHI 158


>gi|71733247|ref|YP_276321.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|237798553|ref|ZP_04587014.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|257482271|ref|ZP_05636312.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|289624592|ref|ZP_06457546.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646951|ref|ZP_06478294.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298488446|ref|ZP_07006477.1| Transcription elongation factor GreA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|71553800|gb|AAZ33011.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157071|gb|EFH98160.1| Transcription elongation factor GreA [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320322538|gb|EFW78631.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329993|gb|EFW85980.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330868236|gb|EGH02945.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330875233|gb|EGH09382.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330888668|gb|EGH21329.1| transcription elongation factor GreA [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330963965|gb|EGH64225.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|330987045|gb|EGH85148.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011488|gb|EGH91544.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331021406|gb|EGI01463.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 158

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 98/158 (62%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G   +++EL    +  RP++ + I  AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MIKYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A VID++T+    ++ FG TV +    + +   YQIVG+ EAD++ G +
Sbjct: 61  RIRDIEGRMQNAVVIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIARALI KE GD++ V  P G   YEI++V  I
Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158


>gi|194336836|ref|YP_002018630.1| transcription elongation factor GreA [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|238693368|sp|B4SBF9|GREA_PELPB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|194309313|gb|ACF44013.1| transcription elongation factor GreA [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 159

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 63/156 (40%), Positives = 102/156 (65%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D+I +TS G++++++EL     + R  +++ I+EARA+GDLSENAEY AA+E Q+  E
Sbjct: 1   MTDRIYLTSDGYNRLKEELYVLVHQTRREVLEKIAEARAHGDLSENAEYDAAREEQSHTE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119
            R+A+LEN +  A ++D   +  D++    +V L   ++ D+   Y +V  +EAD  SG 
Sbjct: 61  ARIADLENKLASATILDPKQIKTDKVYILTSVKLKNLDTPDEIIEYTLVSSEEADTDSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S+ SP+ RALIGK +G+ + +  P GE  YEIL++
Sbjct: 121 ISVRSPVGRALIGKAVGEKVQIVVPKGELHYEILEI 156


>gi|330895316|gb|EGH27654.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 158

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 98/158 (62%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G   +++EL    +  RP++ + I  AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MIKYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A +ID++T+    ++ FG TV +    + +   YQIVG+ EAD++ G +
Sbjct: 61  RIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIARALI KE GD++ V  P G   YEI++V  I
Sbjct: 121 SVGSPIARALIAKEEGDVVFVKTPSGVIEYEIVEVRHI 158


>gi|264679927|ref|YP_003279836.1| Kelongation factor GreB [Comamonas testosteroni CNB-2]
 gi|262210442|gb|ACY34540.1| Kelongation factor GreB [Comamonas testosteroni CNB-2]
          Length = 231

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+ +I+ EL      ERP+I++ +  A + GD SEN +Y   K+     + R+
Sbjct: 71  KNYITPQGYQRIKDELLDLIDNERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRI 130

Query: 64  AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D +  +  D++ FGATVS V+   G ++   I+G  EAD     VS 
Sbjct: 131 RFLTKRLEIAEVVDPAVHAGSDQVFFGATVSYVDDE-GVERTITIMGIDEADSAQNQVSW 189

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +P++RAL+   +GD +++  P G +  EIL V +
Sbjct: 190 IAPVSRALLKARVGDEVALPTPAGVRMLEILDVSY 224


>gi|311107031|ref|YP_003979884.1| transcription elongation factor GreB [Achromobacter xylosoxidans
           A8]
 gi|310761720|gb|ADP17169.1| transcription elongation factor GreB [Achromobacter xylosoxidans
           A8]
          Length = 183

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+++++ EL      ERP +++ +S A + GD SEN +Y   K+     + RM
Sbjct: 28  KNYMTPGGYERLRSELTHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRM 87

Query: 64  AELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D  +  + D++ FGATV   +K    + N  IVG  EA+  +G +S 
Sbjct: 88  RFLTKRLDIAEVVDPAAQPNRDQVFFGATVLYSDKAGE-EHNVTIVGVDEAEPLAGKISW 146

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARALI  + GD + +  PGG +  +IL V +
Sbjct: 147 ISPVARALIKAKEGDTVVLRTPGGIEELDILDVSY 181


>gi|114704985|ref|ZP_01437893.1| transcription elongation factor (transcript cleavage factor)
           protein [Fulvimarina pelagi HTCC2506]
 gi|114539770|gb|EAU42890.1| transcription elongation factor (transcript cleavage factor)
           protein [Fulvimarina pelagi HTCC2506]
          Length = 157

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 104/156 (66%), Positives = 137/156 (87%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T++GF+ +++ELR RQQEERPRII+AISEARA+GDLSENAEY AAKE Q+LNEG
Sbjct: 1   MQKVPMTTRGFETLKEELRRRQQEERPRIIQAISEARAHGDLSENAEYHAAKEAQSLNEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R++ELE++  RAEVID+S MSGD++ FGATV LV++ + +++ +QIVGDQEADV+SG +S
Sbjct: 61  RISELEDVTARAEVIDVSKMSGDKVMFGATVKLVDEETEEERLFQIVGDQEADVKSGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ISSPIARALIGKE GD + V APGG ++YE+L+VLW
Sbjct: 121 ISSPIARALIGKEEGDTVEVAAPGGARSYEVLEVLW 156


>gi|16800599|ref|NP_470867.1| transcription elongation factor GreA [Listeria innocua Clip11262]
 gi|16803536|ref|NP_465021.1| transcription elongation factor GreA [Listeria monocytogenes EGD-e]
 gi|46907724|ref|YP_014113.1| transcription elongation factor GreA [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47095449|ref|ZP_00233059.1| transcription elongation factor GreA [Listeria monocytogenes str.
           1/2a F6854]
 gi|217964358|ref|YP_002350036.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M) [Listeria
           monocytogenes HCC23]
 gi|224500662|ref|ZP_03669011.1| transcription elongation factor GreA [Listeria monocytogenes
           Finland 1988]
 gi|224501564|ref|ZP_03669871.1| transcription elongation factor GreA [Listeria monocytogenes FSL
           R2-561]
 gi|226224097|ref|YP_002758204.1| transcription elongation factor GreA [Listeria monocytogenes
           Clip81459]
 gi|254824445|ref|ZP_05229446.1| transcription elongation factor greA [Listeria monocytogenes FSL
           J1-194]
 gi|254828270|ref|ZP_05232957.1| transcription elongation factor greA [Listeria monocytogenes FSL
           N3-165]
 gi|254829745|ref|ZP_05234400.1| transcription elongation factor GreA [Listeria monocytogenes
           10403S]
 gi|254852120|ref|ZP_05241468.1| transcription elongation factor greA [Listeria monocytogenes FSL
           R2-503]
 gi|254898338|ref|ZP_05258262.1| transcription elongation factor GreA [Listeria monocytogenes J0161]
 gi|254912170|ref|ZP_05262182.1| transcription elongation factor GreA [Listeria monocytogenes J2818]
 gi|254931431|ref|ZP_05264790.1| transcription elongation factor greA [Listeria monocytogenes
           HPB2262]
 gi|254936498|ref|ZP_05268195.1| transcription elongation factor greA [Listeria monocytogenes F6900]
 gi|254993602|ref|ZP_05275792.1| transcription elongation factor GreA [Listeria monocytogenes FSL
           J2-064]
 gi|255017028|ref|ZP_05289154.1| transcription elongation factor GreA [Listeria monocytogenes FSL
           F2-515]
 gi|255022898|ref|ZP_05294884.1| transcription elongation factor GreA [Listeria monocytogenes FSL
           J1-208]
 gi|255027806|ref|ZP_05299792.1| transcription elongation factor GreA [Listeria monocytogenes FSL
           J2-003]
 gi|255029278|ref|ZP_05301229.1| transcription elongation factor GreA [Listeria monocytogenes LO28]
 gi|255521197|ref|ZP_05388434.1| transcription elongation factor GreA [Listeria monocytogenes FSL
           J1-175]
 gi|284801885|ref|YP_003413750.1| hypothetical protein LM5578_1640 [Listeria monocytogenes 08-5578]
 gi|284995027|ref|YP_003416795.1| hypothetical protein LM5923_1592 [Listeria monocytogenes 08-5923]
 gi|290893856|ref|ZP_06556834.1| transcription elongation factor greA [Listeria monocytogenes FSL
           J2-071]
 gi|315282402|ref|ZP_07870822.1| transcription elongation factor GreA [Listeria marthii FSL S4-120]
 gi|54037217|sp|P64278|GREA_LISIN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|54041327|sp|P64277|GREA_LISMO RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|67460875|sp|Q71ZH4|GREA_LISMF RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799560|sp|B8DE15|GREA_LISMH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|259647647|sp|C1KVE3|GREA_LISMC RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|16410925|emb|CAC99574.1| lmo1496 [Listeria monocytogenes EGD-e]
 gi|16414004|emb|CAC96762.1| lin1531 [Listeria innocua Clip11262]
 gi|46880993|gb|AAT04290.1| transcription elongation factor GreA [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|47016270|gb|EAL07193.1| transcription elongation factor GreA [Listeria monocytogenes str.
           1/2a F6854]
 gi|217333628|gb|ACK39422.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M) [Listeria
           monocytogenes HCC23]
 gi|225876559|emb|CAS05268.1| Putative transcription elongation factor GreA [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|258600658|gb|EEW13983.1| transcription elongation factor greA [Listeria monocytogenes FSL
           N3-165]
 gi|258605422|gb|EEW18030.1| transcription elongation factor greA [Listeria monocytogenes FSL
           R2-503]
 gi|258609092|gb|EEW21700.1| transcription elongation factor greA [Listeria monocytogenes F6900]
 gi|284057447|gb|ADB68388.1| hypothetical protein LM5578_1640 [Listeria monocytogenes 08-5578]
 gi|284060494|gb|ADB71433.1| hypothetical protein LM5923_1592 [Listeria monocytogenes 08-5923]
 gi|290556573|gb|EFD90109.1| transcription elongation factor greA [Listeria monocytogenes FSL
           J2-071]
 gi|293582981|gb|EFF95013.1| transcription elongation factor greA [Listeria monocytogenes
           HPB2262]
 gi|293590143|gb|EFF98477.1| transcription elongation factor GreA [Listeria monocytogenes J2818]
 gi|293593681|gb|EFG01442.1| transcription elongation factor greA [Listeria monocytogenes FSL
           J1-194]
 gi|307571077|emb|CAR84256.1| greA [Listeria monocytogenes L99]
 gi|313608715|gb|EFR84544.1| transcription elongation factor GreA [Listeria monocytogenes FSL
           F2-208]
 gi|313613954|gb|EFR87678.1| transcription elongation factor GreA [Listeria marthii FSL S4-120]
 gi|328465535|gb|EGF36764.1| transcription elongation factor GreA [Listeria monocytogenes 1816]
 gi|328474861|gb|EGF45661.1| transcription elongation factor GreA [Listeria monocytogenes 220]
 gi|332311938|gb|EGJ25033.1| Transcription elongation factor [Listeria monocytogenes str. Scott
           A]
          Length = 160

 Score =  137 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 96/156 (61%), Gaps = 1/156 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
            +K+ P+T  G  K++ EL+  +  +R  +++ I  AR++GDLSEN+EY +AK+ Q   E
Sbjct: 3   TEKVFPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVE 62

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+  +EN+I  A++ID +      +  G TV+ +E   G+++ Y IVG  EAD   G +
Sbjct: 63  GRITTIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKI 122

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPIA+ L+G + G+ +++  P G+ + +I ++ 
Sbjct: 123 SNDSPIAKGLLGHKEGEEVTIQTPAGDMSVKIEKIT 158


>gi|325955129|ref|YP_004238789.1| transcription elongation factor GreA [Weeksella virosa DSM 16922]
 gi|323437747|gb|ADX68211.1| transcription elongation factor GreA [Weeksella virosa DSM 16922]
          Length = 159

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 99/156 (63%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +   VT +G +K++ EL   +  ERP+I + I+EAR  GDLSENAEY AAKE Q + E
Sbjct: 1   MANIQYVTKEGLEKLRAELHELETYERPKISQQIAEARDKGDLSENAEYDAAKEAQGMLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+++L+  I  A +ID S +   +I+  +TV +  + S  + +Y +V + EAD++   +
Sbjct: 61  MRISKLQESIANARLIDESKLDATKISILSTVRIRNQVSKQELSYTLVPETEADLKKARI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
           S+++PIA+ L+GK +GDI  +  P G   T+E+L +
Sbjct: 121 SVNTPIAKGLLGKSVGDIAEIELPNGQTLTFEVLSI 156


>gi|213027547|ref|ZP_03341994.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 145

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/145 (45%), Positives = 105/145 (72%), Gaps = 1/145 (0%)

Query: 15  IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
           +++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EGR+ ++E  ++ A+
Sbjct: 1   MREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEGRIKDIEAKLSNAQ 60

Query: 75  VIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
           VID++ M  + R+ FGATV+++  ++ +++ Y+IVGD EAD +  L+S++SPIAR LIGK
Sbjct: 61  VIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGK 120

Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158
           E  D++ +  PGG+  YE+L+V ++
Sbjct: 121 EQDDVVVIKTPGGDVEYEVLKVEYL 145


>gi|297180938|gb|ADI17141.1| transcription elongation factor [uncultured gamma proteobacterium
           HF0070_08D07]
          Length = 157

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 75/155 (48%), Positives = 114/155 (73%), Gaps = 1/155 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           IP+T  G + ++ EL  R+ E R  I+K I+EARA+GDL ENAEY AA+E Q+LNEGR+ 
Sbjct: 3   IPMTVHGAESLRAELAERKGEIRQSIVKDIAEARAHGDLKENAEYHAAREQQSLNEGRIQ 62

Query: 65  ELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           ++E+ +  A++ID++ +    ++ FGATV++ ++ S D+  YQIVG+ EAD++ G +S+ 
Sbjct: 63  DIESKLADAQIIDVTKIPATGKVVFGATVTIADEESDDETTYQIVGEDEADLKFGKISVL 122

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SPI+RALIGK+ GD+ SVN+P G K YEI++V  +
Sbjct: 123 SPISRALIGKDTGDVASVNSPSGVKDYEIIKVEHL 157


>gi|291515359|emb|CBK64569.1| transcription elongation factor GreA [Alistipes shahii WAL 8301]
          Length = 158

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/156 (41%), Positives = 100/156 (64%), Gaps = 1/156 (0%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  +I  +T++G+ KI+ EL   +  ERP I  AI+EAR  GDLSENAEY AA+E Q L 
Sbjct: 1   MAQEIIYLTAEGYKKIKDELEHMRSVERPAISAAIAEARDKGDLSENAEYDAAREAQGLL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A+LE+ +  A VID S +   ++   + V+L+  N+  +  Y IV + EA+++ G 
Sbjct: 61  EMRIAKLEDTMANARVIDESKIDKSKVQILSKVTLLNHNNQKQMTYTIVAEHEANLREGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           ++I +PIA+AL+G++ GD + V  P G   +EIL +
Sbjct: 121 LAIGTPIAKALLGRKKGDRVDVEVPAGTIHFEILDI 156


>gi|302390918|ref|YP_003826738.1| transcription elongation factor GreA [Acetohalobium arabaticum DSM
           5501]
 gi|302202995|gb|ADL11673.1| transcription elongation factor GreA [Acetohalobium arabaticum DSM
           5501]
          Length = 157

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 98/156 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +K+ +T +G +K+++EL + +  +R  + K I +A  +GD+SEN+EY  AK  Q   E
Sbjct: 1   MAEKVILTKEGLNKLEEELSYLKGTKRREVAKRIKQALEFGDISENSEYDDAKNEQAFVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ E+EN++  AEVI+   +    +  G TV++ + ++ ++ NY+IVG  EAD     +
Sbjct: 61  GRIKEIENMLNNAEVINEDEVETTEVNIGTTVTIRDLDTEEEYNYKIVGTTEADPFENKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SP+  AL+G ++G+ + ++AP G+  Y+IL + 
Sbjct: 121 SNDSPVGNALLGHKIGEEVEIDAPAGKIVYKILAIQ 156


>gi|148244934|ref|YP_001219628.1| transcription elongation factor GreA [Candidatus Vesicomyosocius
           okutanii HA]
 gi|166201193|sp|A5CVW9|GREA_VESOH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|146326761|dbj|BAF61904.1| transcription elongation factor GreA [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 159

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 100/157 (63%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++ IPVT+ G   ++  L   +   RPRII+ I  ARA+GDL ENAEY AAKE Q+  EG
Sbjct: 1   MNNIPVTAFGAKALEAALLKLKDVSRPRIIEDIRIARAHGDLKENAEYHAAKEEQSFVEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++R ++ID++ +S D R  FG T++L+      +  YQIVG+ EAD+    +
Sbjct: 61  RIKEIELKLSRMQIIDVTKLSQDGRCVFGTTITLMNSVDNSEITYQIVGEDEADISLDKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S  SPIA AL+G E GD + V AP G+  Y+IL V +
Sbjct: 121 SCHSPIASALMGNEEGDKVIVKAPKGDIVYKILSVEY 157


>gi|157736870|ref|YP_001489553.1| transcription elongation factor GreA [Arcobacter butzleri RM4018]
 gi|315636041|ref|ZP_07891300.1| transcription elongation factor GreA [Arcobacter butzleri JV22]
 gi|166987609|sp|A8ESG0|GREA_ARCB4 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|157698724|gb|ABV66884.1| transcription elongation factor GreA [Arcobacter butzleri RM4018]
 gi|315479697|gb|EFU70371.1| transcription elongation factor GreA [Arcobacter butzleri JV22]
          Length = 161

 Score =  137 bits (345), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/156 (42%), Positives = 109/156 (69%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T  G++K+  EL + ++ ERP  + A+ EAR  GDL ENAEY +AKE   L + 
Sbjct: 1   MEKEPMTLAGYNKVTAELDFLKKTERPETVIALDEARQLGDLKENAEYHSAKEKLKLIDI 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++AEL  +I++A +ID +T+  DR++FG+T+ LV+ ++ ++  Y IVG  E+  + G++S
Sbjct: 61  QIAELNAVISKAVIIDPTTLPHDRVSFGSTIDLVDVDTDEEFTYTIVGGVESSAEKGMIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +SP+A+ L+GKE GD ++   PGG KT+EIL+V +
Sbjct: 121 FNSPLAKQLMGKEAGDELNATLPGGAKTFEILKVYY 156


>gi|54307806|ref|YP_128826.1| transcription elongation factor GreA [Photobacterium profundum SS9]
 gi|46912229|emb|CAG19024.1| putative transcription elongation factor GreA [Photobacterium
           profundum SS9]
          Length = 166

 Score =  137 bits (345), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 108/158 (68%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G   +++EL    +  RP I KAI EAR  GDL ENAEY AA+E Q + E 
Sbjct: 10  MEKVPMTVRGEQTLREELEILLK-RRPIISKAIGEARELGDLKENAEYHAAREEQGICEA 68

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ ++VID++ M    ++ FG TV L++ N+ D+  Y IVGD EAD++  L+
Sbjct: 69  QIRDIEYKLSVSQVIDVTKMENTGKVIFGTTVKLIDINTDDELTYCIVGDDEADIKKNLI 128

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK  GD +S++ PGG K +EI QV ++
Sbjct: 129 SVNSPIARGLIGKLEGDEVSIHTPGGVKEFEIEQVQYL 166


>gi|240143459|ref|ZP_04742060.1| transcription elongation factor GreA [Roseburia intestinalis L1-82]
 gi|257204492|gb|EEV02777.1| transcription elongation factor GreA [Roseburia intestinalis L1-82]
          Length = 159

 Score =  137 bits (345), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 93/155 (60%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K  +T +G  K++ EL   +   R  + + I EAR  GDLSENAEY AAK+ Q   E
Sbjct: 1   MDKKNILTYEGLKKLEDELENLKVVRRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ ELE I+  AEV+       D+++ G +V +++    ++  Y+IVG  EA+   G +
Sbjct: 61  ARIEELEKILKNAEVVVEEEADLDKVSIGCSVKILDCEFEEELEYKIVGSTEANSLKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SP+ +AL+GK++GD ++V  P GE +Y++L +
Sbjct: 121 SNESPVGKALLGKQVGDTVTVETPAGEFSYKVLSI 155


>gi|116491243|ref|YP_810787.1| transcription elongation factor GreA [Oenococcus oeni PSU-1]
 gi|290890788|ref|ZP_06553855.1| hypothetical protein AWRIB429_1245 [Oenococcus oeni AWRIB429]
 gi|122276575|sp|Q04EK0|GREA_OENOB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|116091968|gb|ABJ57122.1| transcription elongation factor GreA [Oenococcus oeni PSU-1]
 gi|290479560|gb|EFD88217.1| hypothetical protein AWRIB429_1245 [Oenococcus oeni AWRIB429]
          Length = 162

 Score =  137 bits (345), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 95/158 (60%), Gaps = 3/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T++G  K+Q EL      +RP I   I EAR++GDLSEN+EYQ+AK+ Q  
Sbjct: 1   MAEEKTYPMTAEGLAKLQAELDDLITNKRPAITSRIQEARSFGDLSENSEYQSAKDEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +L+ +I  A+VID S+ S + +  G  +S  E   GD++ Y IVG  E+D  SG
Sbjct: 61  VEGRVKQLQQMIQFAQVIDASSASKNVVTLGKKISFKEVPDGDEETYTIVGSAESDPLSG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQV 155
            +S  SP+ +AL+  + GD + +  P     T EIL V
Sbjct: 121 KISNDSPMGKALLDHKTGDKVEIPLPENHSVTVEILHV 158


>gi|110638033|ref|YP_678241.1| transcription elongation factor GreA [Cytophaga hutchinsonii ATCC
           33406]
 gi|110280714|gb|ABG58900.1| transcription elongation factor GreA [Cytophaga hutchinsonii ATCC
           33406]
          Length = 158

 Score =  137 bits (345), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 100/156 (64%), Gaps = 1/156 (0%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  K+   T +G +K++ EL   + + R +I   I+EAR  GDLSENAEY AAK+ Q L 
Sbjct: 1   MSSKVSYYTEEGLNKLKNELSHLKTKGRSQIAAQIAEARDKGDLSENAEYDAAKDAQGLL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E ++++LE I++ A ++D ST+   + +    V +  K +G    Y +V ++EAD+++G 
Sbjct: 61  ELKISKLEEIVSNARLLDESTIDTSKASILTKVKIKNKKTGHIVEYTLVSEEEADLKAGR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S+ SPI +AL+G+E+G+ + V+ P G+  +EIL +
Sbjct: 121 ISLKSPIGKALLGREVGETVLVDVPAGKIEFEILDI 156


>gi|189459948|ref|ZP_03008733.1| hypothetical protein BACCOP_00581 [Bacteroides coprocola DSM 17136]
 gi|189433321|gb|EDV02306.1| hypothetical protein BACCOP_00581 [Bacteroides coprocola DSM 17136]
          Length = 202

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 96/152 (63%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ K+  EL+  +  ERP+I+ AI+EAR  GDLSENAEY AAKE Q + E ++ +
Sbjct: 51  YMSEEGYQKLVAELKHLESVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINQ 110

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 111 LKATIGDAKIIDTSKLKADTVQILTRVELKNVKTGMKMAYTIVSETEANLKLGKISVNTP 170

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++GDI  +  P G+ + E+  + +
Sbjct: 171 IAQGLLGKKVGDIAEITIPQGKISLEVTGISF 202


>gi|218259539|ref|ZP_03475246.1| hypothetical protein PRABACTJOHN_00904 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225022|gb|EEC97672.1| hypothetical protein PRABACTJOHN_00904 [Parabacteroides johnsonii
           DSM 18315]
          Length = 156

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 57/150 (38%), Positives = 94/150 (62%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T  G+DKI  E+ + +  +RP I   I+EAR  GDLSENAEY AAKE Q + E ++A+
Sbjct: 5   YMTKDGYDKILAEINYLETVKRPEISAQIAEARDKGDLSENAEYDAAKEAQGIMEAKLAQ 64

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ +I+ A +ID S +  D +     V +    +     Y +V D EA+++ G +++S+P
Sbjct: 65  LKGLISNARLIDESRVQTDEVQILNKVKIKNTKNNAVMTYTLVSDSEANLKEGKIAVSTP 124

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+GK++GDI+ +  P G  ++EI+ +
Sbjct: 125 IAQGLMGKKVGDIVEIKVPSGMMSFEIMDI 154


>gi|28871634|ref|NP_794253.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966657|ref|ZP_03394808.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           tomato T1]
 gi|301383167|ref|ZP_07231585.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           tomato Max13]
 gi|302063398|ref|ZP_07254939.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           tomato K40]
 gi|302133771|ref|ZP_07259761.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|37999561|sp|Q87WP5|GREA_PSESM RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|28854886|gb|AAO57948.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928507|gb|EEB62051.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           tomato T1]
 gi|331016638|gb|EGH96694.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 158

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 65/158 (41%), Positives = 99/158 (62%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G   +++EL    +  RP++ + I  AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MIKYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A VID++T++   ++ FG TV +    + +   YQIVG+ EAD++ G +
Sbjct: 61  RIRDIEGRMQNAVVIDVTTIAHTGKVIFGTTVEIANVETDESVVYQIVGEDEADIKKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SPIARALI KE GD++ V  P G   YEI++V  I
Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRHI 158


>gi|120612233|ref|YP_971911.1| transcription elongation factor GreB [Acidovorax citrulli AAC00-1]
 gi|120590697|gb|ABM34137.1| transcription elongation factor GreB [Acidovorax citrulli AAC00-1]
          Length = 188

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL      ERP++++ +  A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYITPAGYARLRSELLDLMDNERPKVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D S     D++ FGATV+ V+     ++   I+G  E D     VS 
Sbjct: 89  RFLTKRLDIAEVVDPSLHHGSDQVFFGATVTYVDDL-DVERTVTILGIDEVDSGQSQVSW 147

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+    GD + +  PGG +T EIL+V +
Sbjct: 148 VSPVARALLKAREGDEVRLGTPGGLRTLEILRVEY 182


>gi|222110079|ref|YP_002552343.1| transcription elongation factor greb [Acidovorax ebreus TPSY]
 gi|221729523|gb|ACM32343.1| transcription elongation factor GreB [Acidovorax ebreus TPSY]
          Length = 186

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 81/156 (51%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T +G+ ++++EL     +ERP++++ +  A + GD SEN +Y   K+     + 
Sbjct: 25  ASKNYITPQGYARLRRELLDLIDDERPKVVEIVHWAASNGDRSENGDYLYGKKRLREIDR 84

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +  A+V+D S  +G    F        +  G ++   I+G  EAD     +S
Sbjct: 85  RIRFLTKRLEIADVVDPSVHTGSDQVFFGATVTYAEEDGVERTVTILGIDEADNSLQQIS 144

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SP+ARAL+    GD +++  P G +T EIL+V +
Sbjct: 145 WISPVARALLKAREGDEVTLQTPAGLRTLEILRVEY 180


>gi|300311440|ref|YP_003775532.1| transcription elongation/transcript cleavage factor protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074225|gb|ADJ63624.1| transcription elongation/transcript cleavage factor protein
           [Herbaspirillum seropedicae SmR1]
          Length = 185

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 73/154 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G  +I+ EL     EERP +++ +S A + GD SEN +Y   K+     + R+
Sbjct: 28  KNYMTPQGHQRIKDELLHLIDEERPEVVRVVSWAASNGDRSENGDYLYGKKRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S   G    F       E   G+     IVG  E D   G +S  
Sbjct: 88  RFLTKRLDNAEVVDPSVHHGSDQIFFGATVTYENQRGEAHTVTIVGIDELDPLKGRISWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL     GD + +  P G +   IL+V +
Sbjct: 148 SPVARALTKAREGDEVVLQTPAGLEQLTILEVSY 181


>gi|290473268|ref|YP_003466134.1| transcription elongation factor and transcript cleavage
           [Xenorhabdus bovienii SS-2004]
 gi|289172567|emb|CBJ79336.1| transcription elongation factor and transcript cleavage
           [Xenorhabdus bovienii SS-2004]
          Length = 160

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  + ERP + +A+S+A A GD SENAEY   K+     +
Sbjct: 1   MAKSNYITREGWHALDQELKYLWKVERPNVTQAVSDAAALGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V +  +   ++  +++VG  E +     +
Sbjct: 61  RRVRFLSKRLDALQIVDPDPRQEGKVFFGAWVKVENEK-AEEHIFRLVGPDEFEPAKKWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+GK++ D I+V  P G   Y IL++ +
Sbjct: 120 SIDSPVARALLGKQVDDEITVMTPNGMAIYWILEIGY 156


>gi|16079786|ref|NP_390610.1| transcription elongation factor GreA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221310668|ref|ZP_03592515.1| transcription elongation factor GreA [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314991|ref|ZP_03596796.1| transcription elongation factor GreA [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319912|ref|ZP_03601206.1| transcription elongation factor GreA [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324193|ref|ZP_03605487.1| transcription elongation factor GreA [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312257|ref|YP_004204544.1| transcription elongation factor GreA [Bacillus subtilis BSn5]
 gi|3183527|sp|P80240|GREA_BACSU RecName: Full=Transcription elongation factor greA; AltName:
           Full=General stress protein 20M; Short=GSP20M; AltName:
           Full=Transcript cleavage factor greA
 gi|2635178|emb|CAB14674.1| transcription elongation factor [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|291485137|dbj|BAI86212.1| transcription elongation factor GreA [Bacillus subtilis subsp.
           natto BEST195]
 gi|320018531|gb|ADV93517.1| transcription elongation factor GreA [Bacillus subtilis BSn5]
          Length = 157

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 103/157 (65%), Gaps = 3/157 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T++G  K++QEL + +  +R  +++ I  AR++GDLSEN+EY +AKE Q  
Sbjct: 1   MAQEKVFPMTAEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  LEN+I  A++I+    S + +  G TV+ VE   GD+++Y IVG  EAD   G
Sbjct: 61  VEGRVTTLENMIRNAKIIEDDGGS-NVVGLGKTVTFVELPDGDEESYTIVGSAEADPFEG 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SPIA++L+GK++ + ++V  PGGE   +I+++
Sbjct: 120 KISNDSPIAKSLLGKKVDEEVTVQTPGGEMLVKIVKI 156


>gi|229098851|ref|ZP_04229787.1| Transcription elongation factor greA [Bacillus cereus Rock3-29]
 gi|229105013|ref|ZP_04235667.1| Transcription elongation factor greA [Bacillus cereus Rock3-28]
 gi|229117876|ref|ZP_04247238.1| Transcription elongation factor greA [Bacillus cereus Rock1-3]
 gi|228665533|gb|EEL21013.1| Transcription elongation factor greA [Bacillus cereus Rock1-3]
 gi|228678390|gb|EEL32613.1| Transcription elongation factor greA [Bacillus cereus Rock3-28]
 gi|228684524|gb|EEL38466.1| Transcription elongation factor greA [Bacillus cereus Rock3-29]
          Length = 182

 Score =  137 bits (344), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 60/152 (39%), Positives = 95/152 (62%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T +G  K++ E+   +   R  +++ I  AR++GDLSEN+EY AAK+ Q   EGR+ 
Sbjct: 31  YPMTQEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 90

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LEN+I  A +I+ +      +  G TV+  E  +GD++ Y IVG  EAD   G +S  S
Sbjct: 91  QLENMIRNAVIIEDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 150

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 151 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 182


>gi|30264449|ref|NP_846826.1| transcription elongation factor GreA [Bacillus anthracis str. Ames]
 gi|47529904|ref|YP_021253.1| transcription elongation factor GreA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47566566|ref|ZP_00237388.1| transcription elongation factor GreA [Bacillus cereus G9241]
 gi|49187271|ref|YP_030523.1| transcription elongation factor GreA [Bacillus anthracis str.
           Sterne]
 gi|49481456|ref|YP_038430.1| transcription elongation factor GreA [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|52141127|ref|YP_085702.1| transcription elongation factor GreA [Bacillus cereus E33L]
 gi|165872735|ref|ZP_02217363.1| transcription elongation factor GreA [Bacillus anthracis str.
           A0488]
 gi|167634587|ref|ZP_02392907.1| transcription elongation factor GreA [Bacillus anthracis str.
           A0442]
 gi|167638510|ref|ZP_02396786.1| transcription elongation factor GreA [Bacillus anthracis str.
           A0193]
 gi|170687498|ref|ZP_02878715.1| transcription elongation factor GreA [Bacillus anthracis str.
           A0465]
 gi|170707370|ref|ZP_02897824.1| transcription elongation factor GreA [Bacillus anthracis str.
           A0389]
 gi|177653224|ref|ZP_02935476.1| transcription elongation factor GreA [Bacillus anthracis str.
           A0174]
 gi|227817158|ref|YP_002817167.1| transcription elongation factor GreA [Bacillus anthracis str. CDC
           684]
 gi|229602899|ref|YP_002868667.1| transcription elongation factor GreA [Bacillus anthracis str.
           A0248]
 gi|38372311|sp|Q81LK9|GREA_BACAN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|81394760|sp|Q6HDE6|GREA_BACHK RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|81686118|sp|Q634G5|GREA_BACCZ RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799545|sp|C3P968|GREA_BACAA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799546|sp|C3L5Y5|GREA_BACAC RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|30259107|gb|AAP28312.1| transcription elongation factor GreA [Bacillus anthracis str. Ames]
 gi|47505052|gb|AAT33728.1| transcription elongation factor GreA [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47556596|gb|EAL14928.1| transcription elongation factor GreA [Bacillus cereus G9241]
 gi|49181198|gb|AAT56574.1| transcription elongation factor GreA [Bacillus anthracis str.
           Sterne]
 gi|49333012|gb|AAT63658.1| transcription elongation factor [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|51974596|gb|AAU16146.1| transcription elongation factor [Bacillus cereus E33L]
 gi|164711511|gb|EDR17060.1| transcription elongation factor GreA [Bacillus anthracis str.
           A0488]
 gi|167513358|gb|EDR88728.1| transcription elongation factor GreA [Bacillus anthracis str.
           A0193]
 gi|167530039|gb|EDR92774.1| transcription elongation factor GreA [Bacillus anthracis str.
           A0442]
 gi|170127614|gb|EDS96487.1| transcription elongation factor GreA [Bacillus anthracis str.
           A0389]
 gi|170668693|gb|EDT19439.1| transcription elongation factor GreA [Bacillus anthracis str.
           A0465]
 gi|172081506|gb|EDT66578.1| transcription elongation factor GreA [Bacillus anthracis str.
           A0174]
 gi|227003868|gb|ACP13611.1| transcription elongation factor GreA [Bacillus anthracis str. CDC
           684]
 gi|229267307|gb|ACQ48944.1| transcription elongation factor GreA [Bacillus anthracis str.
           A0248]
          Length = 158

 Score =  137 bits (344), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 95/152 (62%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T +G  K++ EL   +  +R  +++ I  AR++GDLSEN+EY AAK+ Q   EGR+ 
Sbjct: 7   YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LEN+I  A +I  +      +  G TV+  E  +GD++ Y IVG  EAD   G +S  S
Sbjct: 67  QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 126

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 127 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 158


>gi|51246041|ref|YP_065925.1| transcription elongation factor (GreA) [Desulfotalea psychrophila
           LSv54]
 gi|81641701|sp|Q6AL57|GREA_DESPS RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|50877078|emb|CAG36918.1| probable transcription elongation factor (GreA) [Desulfotalea
           psychrophila LSv54]
          Length = 161

 Score =  137 bits (344), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 107/156 (68%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M+D+IP++ +G  K+++EL    + ER  ++KAI  AR +GDL ENAEY AAKE Q + E
Sbjct: 1   MIDRIPMSVRGNKKLKEELLRLTRVERLDVVKAIEVAREHGDLKENAEYHAAKERQGMIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ +L++ + RAEVID   +S  R+ FG  V L++ ++ ++  YQ++G +E++V++G +
Sbjct: 61  ARIMDLKDKLGRAEVIDCLQVSCKRVVFGTVVVLLDLDTDEEVTYQLLGPEESEVKAGSI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S+ SPI R+++ KE GD +    PGG + +E++++ 
Sbjct: 121 SVLSPIGRSMLSKEEGDEVVTKTPGGTREFEVVEIK 156


>gi|313623703|gb|EFR93852.1| transcription elongation factor GreA [Listeria innocua FSL J1-023]
          Length = 175

 Score =  137 bits (344), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
            +K+ P+T  G  K++ EL+  +  +R  +++ I  AR++GDLSEN+EY +AK+ Q   E
Sbjct: 18  TEKVFPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVE 77

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+  +EN    A++ID +      +  G TV+ +E   G+++ Y IVG  EAD   G +
Sbjct: 78  GRITTIENXXXNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKI 137

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPIA+ L+G + G+ +++  P G+ + +I ++ 
Sbjct: 138 SNDSPIAKGLLGHKEGEEVTIQTPAGDMSVKIEKIT 173


>gi|328957198|ref|YP_004374584.1| transcription elongation factor GreA [Carnobacterium sp. 17-4]
 gi|328673522|gb|AEB29568.1| transcription elongation factor GreA [Carnobacterium sp. 17-4]
          Length = 157

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M++K+  +T  G  K+++EL + +  +R  I++ I  AR++GDLSEN+EY++AK+ Q   
Sbjct: 1   MIEKVYPMTLDGKQKLEEELEYLKTVKRKDIVERIKIARSFGDLSENSEYESAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  +EN++  +E+ID S  + D ++ G  V+ +E   GD++ Y IVG  EAD  +GL
Sbjct: 61  EGRVTTIENMLRFSEIIDNSNTATDEVSLGRKVTFIELPDGDEEEYTIVGSAEADPFNGL 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SPIA+AL+GK++G  ++   PGG+    I+++
Sbjct: 121 ISNDSPIAKALMGKKVGSEVTFGTPGGDMFVRIVEI 156


>gi|268592314|ref|ZP_06126535.1| transcription elongation factor GreB [Providencia rettgeri DSM
           1131]
 gi|291312097|gb|EFE52550.1| transcription elongation factor GreB [Providencia rettgeri DSM
           1131]
          Length = 161

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   + +T +G+D + +EL++  +EERPR+ +++SEA A GD SENAEY   K+     +
Sbjct: 1   MTKSLLITREGWDALDKELKYLWKEERPRVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   + +  +I+       R+ FGA V L ++N   +  ++IVG  E +     +
Sbjct: 61  RRIRFLSKRLDQLRIIEPDPRQEGRVFFGAWVKLEDENENIRI-FRIVGADEFNPTKQWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D I+VN PGG+ TY +L++ +
Sbjct: 120 SIDSPVARALIGKQVDDEITVNTPGGQVTYFVLEISY 156


>gi|149277461|ref|ZP_01883602.1| transcription elongation factor [Pedobacter sp. BAL39]
 gi|149231694|gb|EDM37072.1| transcription elongation factor [Pedobacter sp. BAL39]
          Length = 157

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 62/155 (40%), Positives = 97/155 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +    T  G DK+++EL   +   R  I KAI+EAR  GDLSENAEY AAKE Q L+E
Sbjct: 1   MTEVTYYTQDGLDKLKEELHHMKTTGRQLISKAIAEARDKGDLSENAEYDAAKEAQGLHE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+LE  ++ A +ID S +   ++   + V +    +G   +YQ+V + EAD+++G +
Sbjct: 61  AKIAKLETTLSTARLIDESKLDTSKVLALSIVKIKNVKNGATMSYQLVAESEADLKTGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SPIA+ L+GK +GD   +  P G+  +EIL++
Sbjct: 121 SVKSPIAQGLLGKSVGDKTEIQVPAGKIEFEILEI 155


>gi|299822858|ref|ZP_07054744.1| transcription elongation factor GreA [Listeria grayi DSM 20601]
 gi|299816387|gb|EFI83625.1| transcription elongation factor GreA [Listeria grayi DSM 20601]
          Length = 168

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 97/154 (62%), Gaps = 1/154 (0%)

Query: 3   DKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +K+ P+T +G  K++ EL   +  +R  +++ I  AR +GDLSEN+EY +AK+ Q   EG
Sbjct: 12  EKVFPMTLEGKAKLETELHELKTVKRKEVVERIKIARGFGDLSENSEYDSAKDEQAFVEG 71

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  LEN+I  A++ID    S D +  G TV+  E   GD++ Y IVG  EAD   G +S
Sbjct: 72  RITTLENMIRNAQIIDALDASNDLVTLGKTVTFTEVPDGDEEAYTIVGSAEADPFEGRIS 131

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SPIA+AL+G ++G+ + +  PGGE T +I+ +
Sbjct: 132 NDSPIAKALLGHKIGEEVEIQTPGGEMTVKIIAI 165


>gi|152976794|ref|YP_001376311.1| transcription elongation factor GreA [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189042233|sp|A7GT58|GREA_BACCN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|152025546|gb|ABS23316.1| transcription elongation factor GreA [Bacillus cytotoxicus NVH
           391-98]
          Length = 158

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 94/152 (61%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T +G +K++ EL   +   R  +++ I  AR++GDLSEN+EY AAK+ Q   EGR+ 
Sbjct: 7   YPMTQEGKEKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LEN+I  A +I+ +      +  G TV+  E   GD++ Y IVG  EAD   G +S  S
Sbjct: 67  QLENMIRNAVIIEDTGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDS 126

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA++L+GK++G+ + +  PGGE   EI+ V 
Sbjct: 127 PIAKSLLGKQIGEKVVIQTPGGEMQVEIISVK 158


>gi|320103860|ref|YP_004179451.1| transcription elongation factor GreA [Isosphaera pallida ATCC
           43644]
 gi|319751142|gb|ADV62902.1| transcription elongation factor GreA [Isosphaera pallida ATCC
           43644]
          Length = 157

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 101/154 (65%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK+P++ +G+DK++ +L   + EE P+I + I+ AR +GDLSENAE+ AA E Q + + 
Sbjct: 1   MDKVPMSKEGYDKLRAQLDHWKNEEMPKIAEQIALARGFGDLSENAEFDAAVEAQGMLQA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++ +LE+ ++RA ++D + ++ DR+ FG  V +++ +  D++ +  VG  E D  +  + 
Sbjct: 61  KINDLESKLSRAIIVDKNAVTTDRVVFGTRVKVLDLDCDDEEEFTFVGPGEEDYDNNKIL 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +SSPI + L+GK + D + VN P G   + IL++
Sbjct: 121 LSSPIGQGLLGKSVNDEVCVNVPKGVLRFRILEI 154


>gi|313618851|gb|EFR90728.1| transcription elongation factor GreA [Listeria innocua FSL S4-378]
          Length = 175

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 96/156 (61%), Gaps = 1/156 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
            +K+ P+T  G  K++ EL+  +  +R  +++ I  AR++GDLSEN+EY +AK+ Q   E
Sbjct: 18  TEKVFPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVE 77

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+  +EN+I  A++ID +      +  G TV+ +E   G+++ Y IVG  EAD   G +
Sbjct: 78  GRITTIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKI 137

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPIA+ L+G + G+ +++  P G+ + +I ++ 
Sbjct: 138 SNDSPIAKGLLGHKEGEEVTIQTPAGDMSVKIEKIT 173


>gi|125623471|ref|YP_001031954.1| transcription elongation factor greA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|166200668|sp|A2RIW3|GREA_LACLM RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|124492279|emb|CAL97210.1| transcription elongation factor greA [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300070217|gb|ADJ59617.1| transcription elongation factor GreA [Lactococcus lactis subsp.
           cremoris NZ9000]
          Length = 156

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 71/155 (45%), Positives = 104/155 (67%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M    P+T +G DK++ EL   +  +RP +I  I  AR+YGDLSEN+EY+AAK+ Q   E
Sbjct: 1   MEKTFPMTKEGLDKLKAELENLKLVKRPEVIDRIKVARSYGDLSENSEYEAAKDEQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR++ +E +I  AE++D + ++ D +A G  V+ VE    D+++YQIVG  EAD  +G +
Sbjct: 61  GRISTVETMIRYAEIVDNAKIAKDEVALGKNVTFVEVGETDEESYQIVGTAEADPFTGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SPIAR LIGK++GDI+ V  P GE T +I++V
Sbjct: 121 SNESPIARVLIGKKVGDIVDVPLPVGEMTVKIVKV 155


>gi|87121705|ref|ZP_01077592.1| transcription elongation factor greA (transcript cleavage factor)
           [Marinomonas sp. MED121]
 gi|86162956|gb|EAQ64234.1| transcription elongation factor greA (transcript cleavage factor)
           [Marinomonas sp. MED121]
          Length = 158

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/158 (41%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+P+T +G  ++++EL   +  ERPRII  I+ AR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MRKVPMTVEGEARLREELGHLKSVERPRIINDIAIAREHGDLKENAEYHAAREEQGFAEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  ++ ++VID+  ++   ++ FG+T++L   ++ +   Y+IVGD EA+V+   +
Sbjct: 61  RIKEIEGKLSDSQVIDVKAIAHTGKVIFGSTITLFNVDTEETVTYRIVGDDEAEVKDKKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S +SPIA+ALIGK  GD +++  P GE  YEI  V  +
Sbjct: 121 SYASPIAKALIGKNEGDEVAIKIPSGEVVYEIESVEHL 158


>gi|310815067|ref|YP_003963031.1| transcription elongation factor GreA [Ketogulonicigenium vulgare
           Y25]
 gi|308753802|gb|ADO41731.1| transcription elongation factor GreA [Ketogulonicigenium vulgare
           Y25]
          Length = 156

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 85/156 (54%), Positives = 122/156 (78%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  GFDK+  EL+  +  ERP II AI+EARA+GDLSENAEY +AKE Q+  EG
Sbjct: 1   MEKIPLTRTGFDKLDVELKHLKSVERPAIIAAIAEARAHGDLSENAEYHSAKEKQSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE +I+ AEVID S +S   I FGA V+LV++++ ++K YQIVG+ EADV++G ++
Sbjct: 61  RIKELEGVISLAEVIDTSRLS-GTIKFGAMVTLVDEDTDEEKAYQIVGEYEADVENGRLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALIGK++GD + V  PGG+++YE+L +++
Sbjct: 120 IKSPLARALIGKDVGDSVEVRTPGGDRSYEVLNIVY 155


>gi|229175053|ref|ZP_04302571.1| Transcription elongation factor greA [Bacillus cereus MM3]
 gi|228608421|gb|EEK65725.1| Transcription elongation factor greA [Bacillus cereus MM3]
          Length = 161

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 95/152 (62%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T +G  K++ EL   +  +R  +++ I  AR++GDLSEN+EY AAK+ Q   EGR+ 
Sbjct: 10  YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LEN+I  A +I  +      +  G TV+  E   GD+++Y IVG  EAD   G +S  S
Sbjct: 70  QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPGGDEESYTIVGSAEADPFEGRISNDS 129

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 130 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 161


>gi|296137091|ref|YP_003644333.1| GreA/GreB family elongation factor [Thiomonas intermedia K12]
 gi|295797213|gb|ADG32003.1| GreA/GreB family elongation factor [Thiomonas intermedia K12]
          Length = 187

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL+   ++ERP++++ +S A   GD SEN +Y   K+     + R+
Sbjct: 30  KNYLTPLGYARLRAELKTLVEDERPKVVETVSWAAKNGDRSENGDYIYGKKRLREIDRRI 89

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D S     D++ FGATV   +     +    IVG  E +   G +S 
Sbjct: 90  RFLTKRLDIAEVVDASLQHGNDQVFFGATVRYADDKGA-EHTITIVGIDETEPLQGKISW 148

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+    GD +S+  PGG  T EIL+V +
Sbjct: 149 ISPVARALLKAREGDSVSLPTPGGIATLEILEVSY 183


>gi|255533691|ref|YP_003094063.1| transcription elongation factor GreA [Pedobacter heparinus DSM
           2366]
 gi|255346675|gb|ACU06001.1| transcription elongation factor GreA [Pedobacter heparinus DSM
           2366]
          Length = 157

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 60/155 (38%), Positives = 99/155 (63%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +    T  G DK+++EL++ +   R  I +AI+EAR  GDLSENAEY AAKE Q L+E
Sbjct: 1   MTEVTYYTQDGLDKLKEELQYLKTTGRQLISRAIAEARDKGDLSENAEYDAAKEAQGLHE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A++E  ++ A +ID S +   ++   + V +    +G   +YQ+V + EAD+++G +
Sbjct: 61  AKIAKMEATLSTARLIDESKLDTSKVLALSIVKIKNVKNGATMSYQLVAESEADLKTGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SPIA+ L+GK +GD   +  P G+  +EIL++
Sbjct: 121 SVKSPIAKGLLGKSVGDTTEIEVPAGKMEFEILEI 155


>gi|26991405|ref|NP_746830.1| transcription elongation factor GreA [Pseudomonas putida KT2440]
 gi|148549790|ref|YP_001269892.1| transcription elongation factor GreA [Pseudomonas putida F1]
 gi|167035714|ref|YP_001670945.1| transcription elongation factor GreA [Pseudomonas putida GB-1]
 gi|37999617|sp|Q88DU7|GREA_PSEPK RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|24986475|gb|AAN70294.1|AE016670_4 transcription elongation factor GreA [Pseudomonas putida KT2440]
 gi|148513848|gb|ABQ80708.1| transcription elongation factor GreA [Pseudomonas putida F1]
 gi|166862202|gb|ABZ00610.1| transcription elongation factor GreA [Pseudomonas putida GB-1]
 gi|313500631|gb|ADR61997.1| GreA [Pseudomonas putida BIRD-1]
          Length = 160

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 100/156 (64%), Gaps = 1/156 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K P+T +G   +++E  +  + ERPR+ +AI EAR  GDL ENAEY AA+E Q + E R+
Sbjct: 5   KYPMTVQGARALEEEHLFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARI 64

Query: 64  AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
            ++E  +  + VID++T+    ++ FG TV L    + ++  YQIVG+ EADV+ G +S 
Sbjct: 65  RDIEGRLQNSVVIDVTTIPHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKQGKLSS 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            +PIARA+IGKE GD + V  P G   YEI++V  I
Sbjct: 125 GAPIARAIIGKEEGDTVVVKTPSGTVEYEIVEVKHI 160


>gi|296272431|ref|YP_003655062.1| GreA/GreB family elongation factor [Arcobacter nitrofigilis DSM
           7299]
 gi|296096605|gb|ADG92555.1| GreA/GreB family elongation factor [Arcobacter nitrofigilis DSM
           7299]
          Length = 161

 Score =  136 bits (343), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 107/156 (68%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T+ G+ KI  EL + +  ERP  + A+ EAR  GDL ENAEY AAKE   L + 
Sbjct: 1   MEKEPMTNVGYKKITGELDFLKSHERPETVIALEEARQLGDLKENAEYHAAKEKLKLIDV 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++AEL  ++++A +ID S++  DR++FG+TV LV  ++ ++  Y IVG  E++ + G++S
Sbjct: 61  QIAELGAVLSKAVIIDPSSLPHDRVSFGSTVKLVNTDTDEEYEYSIVGGVESNAEKGMIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +SP+A+ L+GKE GD  S   PGG KT+E+L+V +
Sbjct: 121 FNSPLAKQLMGKEEGDEFSATLPGGVKTFEVLEVFY 156


>gi|194334369|ref|YP_002016229.1| transcription elongation factor GreA [Prosthecochloris aestuarii
           DSM 271]
 gi|238693346|sp|B4S9B2|GREA_PROA2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|194312187|gb|ACF46582.1| transcription elongation factor GreA [Prosthecochloris aestuarii
           DSM 271]
          Length = 160

 Score =  136 bits (343), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 101/157 (64%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D+I +T +G+++++ EL   +   R  +++ I+EARA+GDLSENAEY+AA+E Q   E
Sbjct: 1   MSDRIYLTKQGYNRMRDELNLLKTVVRKEVLEKIAEARAHGDLSENAEYEAAREQQAQME 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV--EKNSGDKKNYQIVGDQEADVQSG 118
            ++ +LEN +TRA ++D   +  DR+    +V L   ++   +   Y +V  +EAD   G
Sbjct: 61  SKIVDLENKLTRASILDPKQIRTDRVYILTSVKLRNLDETDDEIIEYTLVSSEEADTDQG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S+ SP+ +ALIGK +G+ + ++ P GE  YEIL++
Sbjct: 121 KISVRSPVGKALIGKAVGEKVQIHVPKGELHYEILEI 157


>gi|119357650|ref|YP_912294.1| transcription elongation factor GreA [Chlorobium phaeobacteroides
           DSM 266]
 gi|166200656|sp|A1BHJ3|GREA_CHLPD RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|119354999|gb|ABL65870.1| transcription elongation factor GreA [Chlorobium phaeobacteroides
           DSM 266]
          Length = 159

 Score =  136 bits (343), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D+I +T  G++++++EL     ++R  +++ I+EARA+GDLSENAEY AA+E Q+L E
Sbjct: 1   MNDRIYLTRDGYNRLKEELYVLVHQKRKEVLEKIAEARAHGDLSENAEYDAAREEQSLTE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119
             +A+LEN ++ A ++D   +  D++    +V L + +   +   Y +V  +EAD   G 
Sbjct: 61  AHIADLENKLSTATILDPKQVKTDKVYILTSVKLRDLDKEGEIIEYTLVSSEEADTDLGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S+ SP+ RALIGK +G+ + +  P GE  YEIL++
Sbjct: 121 ISVRSPVGRALIGKTVGEKVQIMVPKGELHYEILEI 156


>gi|218885487|ref|YP_002434808.1| transcription elongation factor GreA [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|226737010|sp|B8DJL8|GREA_DESVM RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|218756441|gb|ACL07340.1| transcription elongation factor GreA [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 160

 Score =  136 bits (343), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 70/156 (44%), Positives = 109/156 (69%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP++++G+D++ +EL   +  ERP II+AI EAR  GDL ENA Y AA+E Q + E 
Sbjct: 1   MSSIPISTEGYDRLMKELERLKS-ERPAIIQAIKEAREEGDLKENAGYDAARERQGMLEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R++ +E+ + +  VI++ ++SGD++ FGATV + + +SG+ K Y ++G  EAD   G +S
Sbjct: 60  RISYIESRMAQFNVINLDSLSGDKVMFGATVEIEDLDSGEAKRYTLLGPDEADYAQGTIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SP+ARAL+GKE GD I V+AP G  +YEI+ V +
Sbjct: 120 VLSPVARALLGKEEGDEIVVDAPRGRISYEIISVAF 155


>gi|329960362|ref|ZP_08298787.1| transcription elongation factor GreA [Bacteroides fluxus YIT 12057]
 gi|328532800|gb|EGF59582.1| transcription elongation factor GreA [Bacteroides fluxus YIT 12057]
          Length = 154

 Score =  136 bits (343), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 93/152 (61%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ K+  EL+  +  ERP+I  AI+EAR  GDLSENAEY AAKE Q + E ++  
Sbjct: 3   YMSEEGYKKLMAELKHLETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINN 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 63  LKLTIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMVYTIVSESEANLKEGKISVNTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++GD+  +  P G    E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGVINLEVVNISF 154


>gi|319956761|ref|YP_004168024.1| transcription elongation factor grea [Nitratifractor salsuginis DSM
           16511]
 gi|319419165|gb|ADV46275.1| transcription elongation factor GreA [Nitratifractor salsuginis DSM
           16511]
          Length = 161

 Score =  136 bits (343), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 72/156 (46%), Positives = 107/156 (68%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+    + K+ QEL   + EER +I K I EARA GDL ENAEY AAKE Q L E 
Sbjct: 1   MQKEPMFESTYQKLSQELEQLKNEERAKIAKVIDEARALGDLKENAEYHAAKEKQGLMEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ EL++++ RA+VID S ++  R++FG+TV LV++++ ++  Y IVG QE+D   GL+S
Sbjct: 61  RIIELQDLLARAQVIDPSKLAHQRVSFGSTVVLVDQDTDEEVRYVIVGTQESDPSRGLIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+GKE G+ + +  P G K ++I ++ +
Sbjct: 121 IQSPMARALLGKEEGEEVELQLPSGRKHFDIEEIKY 156


>gi|198274274|ref|ZP_03206806.1| hypothetical protein BACPLE_00415 [Bacteroides plebeius DSM 17135]
 gi|198272949|gb|EDY97218.1| hypothetical protein BACPLE_00415 [Bacteroides plebeius DSM 17135]
          Length = 154

 Score =  136 bits (343), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 98/152 (64%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ K+  EL+  +  ERP+I+ AI+EAR  GDLSENAEY AAKE Q L E ++ +
Sbjct: 3   YMSEEGYQKLVAELKHLESVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINQ 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I  A++ID S +  D +   + V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 63  LKATIGDAKIIDTSKLKTDTVQILSRVELKNVKTGMKMAYTIVSESEANLKQGKISVNTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++GD+  +  P G+ + EI+ + +
Sbjct: 123 IAQGLLGKKVGDVAEITIPQGKISLEIMGISF 154


>gi|154490393|ref|ZP_02030654.1| hypothetical protein PARMER_00626 [Parabacteroides merdae ATCC
           43184]
 gi|154089004|gb|EDN88048.1| hypothetical protein PARMER_00626 [Parabacteroides merdae ATCC
           43184]
          Length = 156

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 94/150 (62%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T  G+DKI  E+ + +  +RP I   I+EAR  GDLSENAEY AAKE Q + E ++++
Sbjct: 5   YMTKDGYDKILAEINYLETVKRPEISAQIAEARDKGDLSENAEYDAAKEAQGIMEAKLSQ 64

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ +I+ A +ID + +  D +     V +    +     Y +V D EA+++ G +++S+P
Sbjct: 65  LKGLISNARLIDETRVQTDEVQILNKVKIKNTKNNAVMTYTLVSDSEANLKEGKIAVSTP 124

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+GK++GDI+ +  P G  ++EI+ +
Sbjct: 125 IAQGLMGKKVGDIVEIKVPSGMMSFEIMDI 154


>gi|294102451|ref|YP_003554309.1| transcription elongation factor GreA [Aminobacterium colombiense
           DSM 12261]
 gi|293617431|gb|ADE57585.1| transcription elongation factor GreA [Aminobacterium colombiense
           DSM 12261]
          Length = 163

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 55/149 (36%), Positives = 91/149 (61%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G++K+  EL   + + R  I + + EAR++GDLSENAEY AAK+ Q+  E R++ L
Sbjct: 12  MTRSGYEKLTAELVELRSDGRAEISRQLEEARSFGDLSENAEYAAAKDEQSKLESRISWL 71

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E  +++A+VID S +   R+  G TV++ +        Y +VG +EAD +   +S SSP+
Sbjct: 72  EFQLSKAKVIDTSDVDTSRVTLGTTVTIEDITHKKVFTYTVVGSEEADPKMNHISSSSPV 131

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
            +AL GK +G+ + V  P G +  +I+ +
Sbjct: 132 GKALFGKTIGEEVQVKVPRGIRNLKIVSI 160


>gi|90416147|ref|ZP_01224079.1| transcription elongation factor GreA [marine gamma proteobacterium
           HTCC2207]
 gi|90331872|gb|EAS47086.1| transcription elongation factor GreA [marine gamma proteobacterium
           HTCC2207]
          Length = 158

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 106/158 (67%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G   +++EL    +E RP II+AI+ AR +GDL ENAEY AA+E Q+  EG
Sbjct: 1   MQKAPMTVEGEIALREELHHLIKEVRPTIIEAIATAREHGDLKENAEYHAAREQQSFTEG 60

Query: 62  RMAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++  +VIDI+ +   DR+ FG TV+++  +      Y+IVGD EADV++  +
Sbjct: 61  RIQDIEGKLSNIQVIDINKIPHGDRVVFGTTVTIINLDLDKTVTYKIVGDDEADVKACKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S  SPIARAL+GKE+ +++ V AP G+  YEI  V +I
Sbjct: 121 SYQSPIARALMGKEISEVVVVKAPSGDVEYEIDNVEFI 158


>gi|311695967|gb|ADP98840.1| protein containing prokaryotic transcription elongation factor GreA
           domain [marine bacterium HP15]
          Length = 153

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 70/153 (45%), Positives = 111/153 (72%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G  ++++EL+  + E+RPR+I AI++AR +GDL ENAEY AA+E Q+  EGR+ E+
Sbjct: 1   MTKAGETRLREELQKLKSEDRPRVIAAIADAREHGDLKENAEYHAAREQQSFIEGRIQEI 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ A+VID++T+    ++ FG TV L+  ++ ++  Y+IVG+ EAD+++G +SISSP
Sbjct: 61  EGKLSAAQVIDVTTIENTGKVIFGTTVHLLNMDTDEQVIYKIVGEDEADIKAGKLSISSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IARAL+GK  GD++++  P G   YEI QV +I
Sbjct: 121 IARALVGKSEGDVVAIRVPSGTVEYEIEQVEYI 153


>gi|227538368|ref|ZP_03968417.1| transcription elongation factor GreA [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241883|gb|EEI91898.1| transcription elongation factor GreA [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 157

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 101/155 (65%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +      +G DK+++EL   + E R  I KAI+EAR  GDLSENAEY AAKE Q L+E
Sbjct: 1   MAEVTYYNQEGLDKLKEELHHLKTEGRANIAKAIAEARDKGDLSENAEYDAAKEAQGLHE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+LE++++ A +ID S +   ++   + V +  K +G +  YQ+V + EAD++SG +
Sbjct: 61  AKIAKLEDVLSSARLIDESKLDTSKVLALSIVRIKNKKNGSEMTYQLVSETEADLKSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SPIA+ L+GK  GD  ++  P G+  +EI+++
Sbjct: 121 SVKSPIAQGLLGKSKGDTATIEVPAGKIEFEIMEI 155


>gi|42783507|ref|NP_980754.1| transcription elongation factor GreA [Bacillus cereus ATCC 10987]
 gi|206975946|ref|ZP_03236856.1| transcription elongation factor GreA [Bacillus cereus H3081.97]
 gi|217961869|ref|YP_002340439.1| transcription elongation factor GreA [Bacillus cereus AH187]
 gi|222097822|ref|YP_002531879.1| transcription elongation factor grea [Bacillus cereus Q1]
 gi|81409080|sp|Q730F5|GREA_BACC1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|226737009|sp|B7HQD7|GREA_BACC7 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799547|sp|B9IYE4|GREA_BACCQ RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|42739436|gb|AAS43362.1| transcription elongation factor GreA [Bacillus cereus ATCC 10987]
 gi|206745698|gb|EDZ57095.1| transcription elongation factor GreA [Bacillus cereus H3081.97]
 gi|217066147|gb|ACJ80397.1| transcription elongation factor GreA [Bacillus cereus AH187]
 gi|221241880|gb|ACM14590.1| transcription elongation factor GreA [Bacillus cereus Q1]
          Length = 158

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 94/152 (61%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T +G  K++ EL   +  +R  +++ I  AR++GDLSEN+EY AAK+ Q   EGR+ 
Sbjct: 7   YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LEN+I  A +I  +      +  G TV+  E   GD++ Y IVG  EAD   G +S  S
Sbjct: 67  QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDS 126

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 127 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 158


>gi|110597704|ref|ZP_01385988.1| transcription elongation factor GreA [Chlorobium ferrooxidans DSM
           13031]
 gi|110340611|gb|EAT59091.1| transcription elongation factor GreA [Chlorobium ferrooxidans DSM
           13031]
          Length = 159

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 98/156 (62%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D+I +T  G++++++EL     E R  +++ I+EARA+GDLSENAEY AA+E Q+  E
Sbjct: 1   MSDRIYLTRDGYNRLKEELYVLVHETRREVLEKIAEARAHGDLSENAEYDAAREEQSHTE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119
            R+A+LEN +  A ++D   +  D++    +V L   +   +   Y +V  +EAD   G 
Sbjct: 61  ARIADLENKLASATILDPKLIKTDKVYILTSVKLRNLDDEKEIIEYTLVSSEEADTDLGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S+ SP+ RALIGK +G+ + +  P G+  YEIL++
Sbjct: 121 ISVRSPVGRALIGKAVGEKVEIMVPKGKLHYEILEI 156


>gi|332289717|ref|YP_004420569.1| transcription elongation factor GreB [Gallibacterium anatis UMN179]
 gi|330432613|gb|AEC17672.1| transcription elongation factor GreB [Gallibacterium anatis UMN179]
          Length = 161

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G++ + QEL++  + ERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRAGWNTLDQELKYLWKVERPQVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       +I FGA V L E  +GD K Y+IVG  E D     +
Sbjct: 61  RRVRFLTKRLEVLQIVDYHPRQEGKIFFGAWVEL-ETENGDLKQYRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK + D + V+ P G+  + + ++ +
Sbjct: 120 SIDSPVARALIGKSIDDEVKVDTPSGKIVFYVNKIWY 156


>gi|121593370|ref|YP_985266.1| transcription elongation factor GreB [Acidovorax sp. JS42]
 gi|120605450|gb|ABM41190.1| transcription elongation factor GreB [Acidovorax sp. JS42]
          Length = 186

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 81/154 (52%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+ ++++EL     +ERP++++ +  A + GD SEN +Y   K+     + R+
Sbjct: 27  KNYITPQGYARLRRELLDLIDDERPKVVEIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A+V+D S  +G    F        +  G ++   I+G  EAD     +S  
Sbjct: 87  RFLTKRLEIADVVDPSVHAGSDQVFFGATVTYAEEDGVERTVTILGIDEADNSLQQISWI 146

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL+    GD +++  P G +T EIL+V +
Sbjct: 147 SPVARALLKAREGDEVTLQTPAGLRTLEILRVEY 180


>gi|313206078|ref|YP_004045255.1| transcription elongation factor grea [Riemerella anatipestifer DSM
           15868]
 gi|312445394|gb|ADQ81749.1| transcription elongation factor GreA [Riemerella anatipestifer DSM
           15868]
 gi|315023743|gb|EFT36746.1| Transcription elongation factor GreA [Riemerella anatipestifer
           RA-YM]
 gi|325336482|gb|ADZ12756.1| Transcription elongation factor [Riemerella anatipestifer RA-GD]
          Length = 155

 Score =  136 bits (343), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 59/151 (39%), Positives = 102/151 (67%), Gaps = 1/151 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            VT +G +K++ EL   +  ERP+I + I+EAR  GDLSENAEY AAKE Q L E ++++
Sbjct: 3   YVTKEGLEKMKAELEQLESVERPKITQQIAEARDKGDLSENAEYDAAKEAQGLLEMKISK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+++I  ++VID S +   +++   TV L  K +  ++ + +V D E+D++SG +S+++P
Sbjct: 63  LKDLIATSKVIDESQLDISKVSILTTVKLFNKATKKEQVFTLVPDNESDLKSGKISVNTP 122

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQV 155
           IA+ L+GK++G+   +  P G + T+E+L +
Sbjct: 123 IAKGLLGKKVGETAEITLPNGNQLTFEVLDI 153


>gi|325276153|ref|ZP_08141959.1| transcription elongation factor GreA [Pseudomonas sp. TJI-51]
 gi|324098713|gb|EGB96753.1| transcription elongation factor GreA [Pseudomonas sp. TJI-51]
          Length = 153

 Score =  136 bits (342), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 68/153 (44%), Positives = 101/153 (66%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G   +++EL +  + ERPR+ +AI EAR  GDL ENAEY AA+E Q + E R+ ++
Sbjct: 1   MTVQGARALEEELTFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARIRDI 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  +  + VID++T++   ++ FG TV L    + ++  YQIVG+ EADV+ G +S S+P
Sbjct: 61  EGRLQNSVVIDVTTIAHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKKGKLSNSAP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IARA+IGKE GD + V  P G   YEI++V  I
Sbjct: 121 IARAIIGKEEGDTVVVKTPNGTVEYEIVEVKHI 153


>gi|32490982|ref|NP_871236.1| hypothetical protein WGLp233 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340129|sp|Q8D2W9|GREA_WIGBR RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|25166188|dbj|BAC24379.1| greA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 158

 Score =  136 bits (342), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 115/158 (72%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++ IP+T KG +K+++EL++ +Q +R  IIK+ISEAR YGDL ENAEYQAAKE Q   E 
Sbjct: 1   MNYIPMTLKGAEKLREELKYLKQTKRSEIIKSISEARQYGDLKENAEYQAAKEQQYFCES 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E+ +  +++IDI  +    R+ FG+T+++    + ++K Y+IVGD EA+ ++ L+
Sbjct: 61  RIKEIESKLMHSKIIDIKKIPFRDRVVFGSTITIKNLKTLEEKTYKIVGDDEANFKNNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSP++R LIGK+  +I+++N P G   Y+IL++ ++
Sbjct: 121 SISSPLSRGLIGKKTLEIVNINTPSGIIKYKILKINYL 158


>gi|78188473|ref|YP_378811.1| transcription elongation factor GreA [Chlorobium chlorochromatii
           CaD3]
 gi|123770883|sp|Q3ATA7|GREA_CHLCH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|78170672|gb|ABB27768.1| GreA/GreB family elongation factor [Chlorobium chlorochromatii
           CaD3]
          Length = 160

 Score =  136 bits (342), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 102/156 (65%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D+I +T+ G++++++EL     + R  +++ I+EARA+GDLSENAEY AA+E Q+  E
Sbjct: 1   MNDRIYLTNDGYNRLKEELYVLVHQTRKEVLEKIAEARAHGDLSENAEYDAAREEQSQIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-KNYQIVGDQEADVQSGL 119
            R+ +LE+ ++ A ++D   +  D++    +V L   ++ D+   Y +V  +EAD  +G 
Sbjct: 61  ARIGDLESKLSAATILDPKQIKTDKVYILTSVKLRNLDNPDEIIEYTLVSSEEADTDAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S+ SP+ R+LIGK +G  +++  P GE  YEIL++
Sbjct: 121 ISVRSPVGRSLIGKTVGAKVTIVVPKGELHYEILEI 156


>gi|304403741|ref|ZP_07385403.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus
           YK9]
 gi|304346719|gb|EFM12551.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus
           YK9]
          Length = 159

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 87/155 (56%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            +++ +T +G+DK+  EL   +   R  + + +  A +YGDL EN+EY +AK  Q+  E 
Sbjct: 4   AEEVILTQEGYDKLMAELEELKTTTRKELAERLKVAISYGDLKENSEYHSAKNDQSFVET 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  LEN+   A ++    +    +  G TV L +    +   Y IVG  EAD+ +  +S
Sbjct: 64  RIKTLENMFKHARIVQAEKLDTAVVQVGFTVKLHDVEFDEDVTYTIVGPAEADIMNNKLS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+ + LIGK +G+ I+V AP G  +Y+IL++ 
Sbjct: 124 YESPLGKELIGKSVGNAITVTAPSGLISYKILEIT 158


>gi|118586750|ref|ZP_01544187.1| transcriptional elongation factor [Oenococcus oeni ATCC BAA-1163]
 gi|118432838|gb|EAV39567.1| transcriptional elongation factor [Oenococcus oeni ATCC BAA-1163]
          Length = 169

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 95/158 (60%), Gaps = 3/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T++G  K+Q EL      +RP I   I EAR++GDLSEN+EYQ+AK+ Q  
Sbjct: 8   MAEEKTYPMTAEGLAKLQAELDDLITNKRPAITSRIQEARSFGDLSENSEYQSAKDEQAF 67

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +L+ +I  A+VID S+ S + +  G  +S  E   GD++ Y IVG  E+D  SG
Sbjct: 68  VEGRVKQLQQMIQFAQVIDASSASKNVVTLGKKISFKEVPDGDEETYTIVGSAESDPLSG 127

Query: 119 LVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQV 155
            +S  SP+ +AL+  + GD + +  P     T EIL V
Sbjct: 128 KISNDSPMGKALLDHKTGDKVEIPLPENHSVTVEILHV 165


>gi|65321747|ref|ZP_00394706.1| COG0782: Transcription elongation factor [Bacillus anthracis str.
           A2012]
 gi|228917013|ref|ZP_04080573.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228948093|ref|ZP_04110377.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229093450|ref|ZP_04224553.1| Transcription elongation factor greA [Bacillus cereus Rock3-42]
 gi|228689921|gb|EEL43725.1| Transcription elongation factor greA [Bacillus cereus Rock3-42]
 gi|228811451|gb|EEM57788.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228842620|gb|EEM87708.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 161

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/152 (40%), Positives = 95/152 (62%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T +G  K++ EL   +  +R  +++ I  AR++GDLSEN+EY AAK+ Q   EGR+ 
Sbjct: 10  YPMTQEGKQKLENELEDLKTVKRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LEN+I  A +I  +      +  G TV+  E  +GD++ Y IVG  EAD   G +S  S
Sbjct: 70  QLENMIRNAVIITDNGEESTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEGRISNDS 129

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 130 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 161


>gi|296333176|ref|ZP_06875629.1| transcription elongation factor GreA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305675318|ref|YP_003866990.1| transcription elongation factor GreA [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296149374|gb|EFG90270.1| transcription elongation factor GreA [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305413562|gb|ADM38681.1| transcription elongation factor GreA [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 157

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 102/157 (64%), Gaps = 3/157 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++QEL + +  +R  +++ I  AR++GDLSEN+EY +AKE Q  
Sbjct: 1   MAQEKVFPMTEEGKQKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  LEN+I  A++I+    S + +  G TV+ VE   GD+++Y IVG  EAD   G
Sbjct: 61  VEGRVTTLENMIRNAKIIEDDGGS-NVVGLGKTVTFVELPDGDEESYTIVGSAEADPFEG 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SPIA++L+GK++ + ++V  PGGE   +I+++
Sbjct: 120 KISNDSPIAKSLLGKKVDEEVTVQTPGGEMLVKIVKI 156


>gi|163790351|ref|ZP_02184783.1| transcription elongation factor GreA [Carnobacterium sp. AT7]
 gi|159874422|gb|EDP68494.1| transcription elongation factor GreA [Carnobacterium sp. AT7]
          Length = 157

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M++K+  +T  G  K+++EL + +  +R  I++ I  AR++GDLSEN+EY++AK+ Q   
Sbjct: 1   MIEKVYPMTLDGKKKLEEELEYLKTVKRKDIVERIKIARSFGDLSENSEYESAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  +EN++  +E+ID S  + D ++ G  V+ +E   GD++ Y IVG  EAD   GL
Sbjct: 61  EGRVTTIENMLRFSEIIDNSKTAADEVSLGRKVTFIELPDGDEEEYTIVGSAEADPFKGL 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SPIA+AL+GK++G  ++   PGG+   +I+++
Sbjct: 121 ISNDSPIAKALMGKKVGSEVTFATPGGDMFVKIVEI 156


>gi|237807290|ref|YP_002891730.1| transcription elongation factor GreB [Tolumonas auensis DSM 9187]
 gi|237499551|gb|ACQ92144.1| transcription elongation factor GreB [Tolumonas auensis DSM 9187]
          Length = 161

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G+ K++ EL++  + +RP + +A+SEA A GD SENAEY+  K      + 
Sbjct: 1   MKTNLITRAGWQKLEDELKYLWKVKRPEVTQAVSEAAALGDRSENAEYKEGKRELRSIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   ++++ S     ++ FGA V L          Y+IVG  E D ++  ++
Sbjct: 61  RLRFLTKRLDALKIVEYSPQQEGKVYFGAWVELENDQGDIVH-YRIVGTDEIDTKNNYIT 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALIGK++ D + VN P GEK + I ++ +
Sbjct: 120 IDSPMARALIGKQVDDEVRVNTPSGEKEWFINKIQY 155


>gi|34557197|ref|NP_907012.1| transcription elongation factor GreA [Wolinella succinogenes DSM
           1740]
 gi|81833097|sp|Q7M9N2|GREA_WOLSU RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|34482913|emb|CAE09912.1| TRANSCRIPTION ELONGATION FACTOR GREA TRANSCRIPT CLEAVAGE FACTORGREA
           [Wolinella succinogenes]
          Length = 162

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/156 (42%), Positives = 104/156 (66%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T  G++K+Q+EL+  ++ ERP+I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1   MQKEPMTIYGYEKLQRELKELKEVERPQIVKEIDIARGHGDLKENAEYHAAKERQLFIEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ EL  I++R +V+D +T++ ++I+FG+T  +++ ++     Y IVG  E++   G +S
Sbjct: 61  RINELSEILSRTQVVDPATITHEKISFGSTFKVMDLDTEFVYEYTIVGAPESNPDRGFIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SP+AR LIGK  GD I+   P GE  YE+L+V +
Sbjct: 121 FYSPLARQLIGKVPGDEINAKLPNGEIDYEVLEVYY 156


>gi|152981655|ref|YP_001353015.1| transcription elongation factor GreB [Janthinobacterium sp.
           Marseille]
 gi|151281732|gb|ABR90142.1| transcription elongation factor GreB [Janthinobacterium sp.
           Marseille]
          Length = 183

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 76/154 (49%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G  +++ EL      ERP +++ +S A + GD SEN +Y   K      +GR+
Sbjct: 26  KNYMTPQGHLRMKTELLKLIDVERPEVVQIVSWAASNGDRSENGDYIYGKRRLRQIDGRI 85

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S   G    F       E  +GD+    I+G  E D  +G +S  
Sbjct: 86  RFLTKRLDLAEVVDPSIHHGSDQIFFGATVRYETQAGDEHTVTILGIDELDPLNGKISWI 145

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL     GD + +  PGG +   IL+V +
Sbjct: 146 SPVARALTKAREGDTVVLKTPGGLEELLILEVTY 179


>gi|229592647|ref|YP_002874766.1| transcription elongation factor GreA [Pseudomonas fluorescens
           SBW25]
 gi|229364513|emb|CAY52367.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Pseudomonas fluorescens SBW25]
          Length = 158

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 97/158 (61%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G   +++E     +  RP++ + I  AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MIKYPMTVQGAKALEEEHAHLTKVVRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A +ID++T+    ++ FG TV +    + +   Y IVG+ EAD + G +
Sbjct: 61  RIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTVEIANVETDESVVYHIVGEDEADFKLGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+ SP+ARALI KE GD+++V  PGG   YEI++V  +
Sbjct: 121 SVGSPLARALIAKEEGDVVAVKTPGGVIEYEIVEVRHV 158


>gi|118444643|ref|YP_877135.1| transcription elongation factor GreA [Clostridium novyi NT]
 gi|166200657|sp|A0PXN3|GREA_CLONN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|118135099|gb|ABK62143.1| transcription elongation factor greA [Clostridium novyi NT]
          Length = 159

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 95/155 (61%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             +  +T++G  K+++EL + +  +R  I + I  A +YGDLSEN+EY  AK  Q   EG
Sbjct: 4   SKQYIMTAEGVKKLEEELEYLKTVKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEG 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +LEN++  A V+D S +S D ++ G+ V + + +  +  ++ IVG  EAD     +S
Sbjct: 64  RIVQLENMLRNANVVDESEISLDAVSVGSIVKVKDYDFDEIIDFHIVGSAEADPMENKIS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+  ALIGK++GD+I+V  P G   +EIL++ 
Sbjct: 124 NESPVGSALIGKKVGDVINVPVPDGISKFEILEIR 158


>gi|30249800|ref|NP_841870.1| transcription elongation factor GreB [Nitrosomonas europaea ATCC
           19718]
 gi|30180837|emb|CAD85759.1| Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas
           europaea ATCC 19718]
          Length = 182

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 84/155 (54%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ E     + ERP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 26  KNYITPGGYQRLKDEFDQLWRVERPELVKVVSWAASNGDRSENGDYIYGKRRLREIDRRL 85

Query: 64  AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AE+ID       D++ FGATV++  +    ++ Y IVG  EA+   G +S 
Sbjct: 86  RFLSRRLDNAEIIDPKQRGECDQVFFGATVTVCNQRGE-EQTYSIVGIDEAEPGRGWISW 144

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+A+AL+    GD++ +  PGG +  E++++ +
Sbjct: 145 ISPLAKALLKAREGDVVPLQTPGGPQELEVVEIRY 179


>gi|23099457|ref|NP_692923.1| transcriptional elongation factor [Oceanobacillus iheyensis HTE831]
 gi|38372370|sp|Q8EPT6|GREA_OCEIH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|22777686|dbj|BAC13958.1| transcriptional elongation factor [Oceanobacillus iheyensis HTE831]
          Length = 158

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 94/152 (61%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T +G DK+++EL + + + R  +++ I  AR +GDLSEN+EY AAK+ Q   E R+ 
Sbjct: 7   YYMTQEGKDKLEEELHYLKTDRRQEVVERIKVARDFGDLSENSEYDAAKDEQAFVEQRIT 66

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ++E +I  A +I+    + + ++ G +VS VE   GD++ Y IVG  EAD   G +S  S
Sbjct: 67  QVEKMIRNAVIIENDNDNPNIVSLGKSVSFVELPDGDEETYTIVGSAEADPFEGKISNDS 126

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+A +L+GKE+G+ ++V  PGG+    I  V 
Sbjct: 127 PMATSLLGKEIGEEVTVTTPGGDIDVRITNVE 158


>gi|104780017|ref|YP_606515.1| transcription elongation factor GreA [Pseudomonas entomophila L48]
 gi|95109004|emb|CAK13700.1| transcription elongation factor (Transcript cleavage factor greA)
           [Pseudomonas entomophila L48]
          Length = 160

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K P+T +G   +++E  +  + ERPR+ +AI EAR  GDL ENAEY AA+E Q + E R+
Sbjct: 5   KYPMTVQGARALEEEHLFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARI 64

Query: 64  AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
            ++E  +  + VID++T++   ++ FG TV L    + ++  YQIVG+ EADV+ G +S 
Sbjct: 65  RDIEGRLQNSVVIDVTTIAHTGKVIFGTTVVLANTETDEEVTYQIVGEDEADVKQGKLSS 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            +PIARA+IGKE GD + V  P G   YEI++V  I
Sbjct: 125 GAPIARAIIGKEEGDTVVVKTPSGTVEYEIVEVKHI 160


>gi|317128247|ref|YP_004094529.1| transcription elongation factor GreA [Bacillus cellulosilyticus DSM
           2522]
 gi|315473195|gb|ADU29798.1| transcription elongation factor GreA [Bacillus cellulosilyticus DSM
           2522]
          Length = 157

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/154 (39%), Positives = 97/154 (62%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K  +T +G +K+++EL + + E R  +++ I  AR++GDLSEN+EY +AKE Q   EGR
Sbjct: 4   EKHYMTLEGKEKLEKELEYLKTERRKEVVERIKVARSFGDLSENSEYDSAKEEQAFVEGR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           ++ +E +I  A +I   + +   +  G TVS  E   GD++ Y IVG  EAD   G +S 
Sbjct: 64  ISTIEKMIRNAVMIKEDSTNTSVVTLGKTVSFKELPDGDEEEYTIVGRAEADPLEGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+A++L+GK +G  ++V  PGG+   EIL+V 
Sbjct: 124 DSPMAQSLMGKSVGQKVTVATPGGDMEVEILEVK 157


>gi|168187057|ref|ZP_02621692.1| transcription elongation factor GreA [Clostridium botulinum C str.
           Eklund]
 gi|169295044|gb|EDS77177.1| transcription elongation factor GreA [Clostridium botulinum C str.
           Eklund]
          Length = 159

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 94/155 (60%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             +  +T++G  K+++EL + +  +R  I + I  A +YGDLSEN+EY  AK  Q   EG
Sbjct: 4   SKQYIMTAEGVKKLEEELEYLKTVKRREITEKIKVALSYGDLSENSEYDEAKNEQAFAEG 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +LEN++  A V+D S +S D ++ G+ V + +    +  ++ IVG  EAD     +S
Sbjct: 64  RIVQLENMLRNANVVDESEISLDTVSVGSIVKVKDYEFDEIIDFHIVGSAEADPMENKIS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+  ALIGK++GD+++V  P G   +EIL++ 
Sbjct: 124 NESPVGSALIGKKVGDVVNVPVPDGISKFEILEIR 158


>gi|311696372|gb|ADP99245.1| transcription elongation factor GreB [marine bacterium HP15]
          Length = 171

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 90/152 (59%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G   ++ EL++  + +RP + +A+ EA A GD SENAEY   K+     + R+  
Sbjct: 14  YITPEGERALRDELQYLWKVKRPEVTQAVREAAALGDRSENAEYIYGKKQLREIDRRVRF 73

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +    V+D      D++ FGA V++ ++  GD++ Y++VG  E D+  G +SI+SP
Sbjct: 74  LGKRLEELTVVDRLPDDRDKVFFGAWVTVEDEE-GDEQTYRLVGADEFDLNKGYLSINSP 132

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +ARALIGK L D +SV  P G K+  ++ + +
Sbjct: 133 LARALIGKRLDDEVSVRTPEGWKSVFVVGIRY 164


>gi|294673245|ref|YP_003573861.1| transcription elongation factor GreA family protein [Prevotella
           ruminicola 23]
 gi|294472262|gb|ADE81651.1| transcription elongation factor GreA family protein [Prevotella
           ruminicola 23]
          Length = 155

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 86/152 (56%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             ++ +G+DK+  EL+  +  + P    AISEAR  GDLSEN EY AAK  Q    GR++
Sbjct: 2   EYMSQEGWDKLVAELKQLETVDLPACKDAISEARDKGDLSENFEYHAAKREQGRLLGRIS 61

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L+ ++  A VID S +  D +   + V +   N+  K  Y I    EA+++ G +SI S
Sbjct: 62  FLQKVLENARVIDTSLLGKDCVGLLSKVEMTNLNNNAKMTYTIASPHEANLREGKISIKS 121

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA+AL+ K++GD++ V  P G    +I  + 
Sbjct: 122 PIAQALLNKKVGDVVEVRVPAGMVKLKIENIT 153


>gi|134095318|ref|YP_001100393.1| transcription elongation factor and transcript cleavage
           [Herminiimonas arsenicoxydans]
 gi|133739221|emb|CAL62270.1| Transcription elongation factor GreB (Transcript cleavage factor
           GreB) [Herminiimonas arsenicoxydans]
          Length = 182

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 76/154 (49%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G  +++ EL      ERP +++ +S A + GD SEN +Y   K      +GR+
Sbjct: 24  KNYMTPQGHLRMKNELLNLIDVERPEVVQIVSWAASNGDRSENGDYIYGKRRLRQIDGRI 83

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D +   G    F       E  +GD+    I+G  E D   G +S  
Sbjct: 84  RFLTKRLDLAEVVDPTVHYGSDQIFFGATVRYETQAGDEHTVTILGIDELDPLHGKISWI 143

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL     GD +++  PGG +   IL+V +
Sbjct: 144 SPVARALTKAREGDSVTLKTPGGLEELLILEVTY 177


>gi|288572943|ref|ZP_06391300.1| transcription elongation factor GreA [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568684|gb|EFC90241.1| transcription elongation factor GreA [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 164

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/162 (40%), Positives = 100/162 (61%), Gaps = 6/162 (3%)

Query: 1   MVDK------IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKE 54
           M DK      I +T +G+D++ +EL+  + EER  + + I EAR++GDLSENAEY AAK+
Sbjct: 1   MSDKTAVSDGIEMTKEGYDRLYEELKRLRSEERYVVAQRIEEARSFGDLSENAEYAAAKD 60

Query: 55  LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
            Q   E R+  LE  +++A+VID S++ G  +A G TV + +  +    +Y IVG +EAD
Sbjct: 61  EQAKLESRIQRLEYQLSKAKVIDSSSLDGSHVALGTTVKIEDIGNKKTFDYSIVGSEEAD 120

Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +   +S  SP+ +AL+GK  GD ISV  P G +   IL++ 
Sbjct: 121 PKKSKISSMSPVGQALMGKHPGDEISVKVPNGMRKLRILEIR 162


>gi|218131388|ref|ZP_03460192.1| hypothetical protein BACEGG_03004 [Bacteroides eggerthii DSM 20697]
 gi|317476400|ref|ZP_07935649.1| transcription elongation factor GreA [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986320|gb|EEC52657.1| hypothetical protein BACEGG_03004 [Bacteroides eggerthii DSM 20697]
 gi|316907426|gb|EFV29131.1| transcription elongation factor GreA [Bacteroides eggerthii
           1_2_48FAA]
          Length = 154

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 97/152 (63%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G++K+  +L+  +  ERP+I+ AI+EAR  GDLSENAEY AAKE Q L E ++ +
Sbjct: 3   YMSEEGYNKLLADLKQLETVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ +I  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 63  LKQVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++GD+  +  P G    E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGIINLEVVNISF 154


>gi|257459030|ref|ZP_05624149.1| transcription elongation factor GreA [Campylobacter gracilis
           RM3268]
 gi|257443415|gb|EEV18539.1| transcription elongation factor GreA [Campylobacter gracilis
           RM3268]
          Length = 163

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/156 (41%), Positives = 100/156 (64%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +   P+T  G++KI  EL+  Q  + P I++ I  AR +GDL ENAEY AA+E Q     
Sbjct: 1   MTTEPMTLYGYEKITSELKELQSVKLPHIVQQIDIARGHGDLKENAEYHAAREEQAFLLS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AEL +II+R+++ID ST   DR+ FG+TV+ ++  +  ++ Y IVG  EAD+   L++
Sbjct: 61  RIAELSDIISRSKIIDPSTYEHDRVKFGSTVTFMDVETEREETYVIVGLSEADISRKLIN 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I++P+AR L+GK  GD + +  P G +  EIL V +
Sbjct: 121 INTPLARQLLGKAEGDEVVLQLPSGTRDVEILSVEY 156


>gi|170719896|ref|YP_001747584.1| transcription elongation factor GreA [Pseudomonas putida W619]
 gi|169757899|gb|ACA71215.1| transcription elongation factor GreA [Pseudomonas putida W619]
          Length = 160

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 101/156 (64%), Gaps = 1/156 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K P+T +G   +++E  +  + ERPR+ +AI EAR  GDL ENAEY AA+E Q + E R+
Sbjct: 5   KYPMTVQGARALEEEHLFLSKTERPRLSQAIGEARELGDLKENAEYHAAREEQGMVEARI 64

Query: 64  AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
            ++E  +  + VID++T+    ++ FG TV L    + ++ +YQIVG+ EADV+ G +S 
Sbjct: 65  RDIEGRLQNSVVIDVTTIPHTGKVIFGTTVVLANTETDEEVSYQIVGEDEADVKQGKLSS 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            +PIARA+IGKE GD + V  P G   YEI++V  I
Sbjct: 125 GAPIARAIIGKEEGDTVVVKTPSGSVEYEIVEVKHI 160


>gi|330877243|gb|EGH11392.1| transcription elongation factor GreA [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 158

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K P+T +G   +++EL    +  RP++ + I  AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MIKYPMTVQGARALEEELTHLTKVIRPKLSQDIGTARELGDLKENAEYHAAREQQGMVEA 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A VID++T+    ++ FG TV +    + ++  Y+IVG+ EA+++ G +
Sbjct: 61  RIRDIEGRMQNAVVIDVTTIPHTGKVIFGTTVEIANVETDERVTYKIVGEDEANIKDGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+ SPIARALI KE GD++ V  P G   YEI++V  
Sbjct: 121 SVGSPIARALIAKEEGDVVVVKTPSGVIEYEIIEVRH 157


>gi|33152279|ref|NP_873632.1| transcription elongation factor GreB [Haemophilus ducreyi 35000HP]
 gi|71152092|sp|Q7VM42|GREB_HAEDU RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|33148502|gb|AAP96021.1| transcription elongation factor [Haemophilus ducreyi 35000HP]
          Length = 162

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + QEL++  +EERP++ +++SEA A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRAGWQALDQELKYLWKEERPKVTQSVSEAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   ++ID       ++ FGA + L          Y+IVG  E D     +
Sbjct: 61  RRIRFLSKRLEALQIIDYHPQQAGKVFFGAWIELENNEGEI-NQYRIVGCDEFDPTKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK + D I V  P G+  + I ++ +
Sbjct: 120 SIDSPVARALIGKCVDDEIEVQTPTGKAVFYINKIWY 156


>gi|217969791|ref|YP_002355025.1| transcription elongation factor GreB [Thauera sp. MZ1T]
 gi|217507118|gb|ACK54129.1| transcription elongation factor GreB [Thauera sp. MZ1T]
          Length = 184

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 89/155 (57%), Gaps = 1/155 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+D ++ EL    + ERP++++ ++ A   GD SEN +Y   K+     + R+
Sbjct: 29  KNYMTRRGYDALRVELDQLVRVERPKLVETVAWAAGNGDRSENGDYIYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   I  AEV+D     G +++ FGATVS  + ++ +++  QIVG  EAD   G +S 
Sbjct: 89  RFLIKRIESAEVVDPERQQGLEQVFFGATVSFSDLDTAEEQTLQIVGVDEADASQGRISW 148

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARA++   +GD++  ++P G +  EI  V +
Sbjct: 149 ISPLARAVLKARVGDVVRFHSPAGVREIEIGAVEY 183


>gi|116511431|ref|YP_808647.1| transcription elongation factor GreA [Lactococcus lactis subsp.
           cremoris SK11]
 gi|123025545|sp|Q030Z7|GREA_LACLS RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|116107085|gb|ABJ72225.1| transcription elongation factor GreA [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 156

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/155 (45%), Positives = 105/155 (67%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M    P+T +G DK++ EL   +  +RP +I  I  AR+YGDLSEN+EY+AAK+ Q   E
Sbjct: 1   MEKTFPMTKEGLDKLKAELENLKLVKRPEVIDRIKVARSYGDLSENSEYEAAKDEQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR++ +E +I  AE+++ + ++ D +A G  V+ VE    D+++YQIVG  EAD  +G +
Sbjct: 61  GRISTVETMIRYAEIVNNAKIAKDEVALGKNVTFVEVGETDEESYQIVGTAEADPFTGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SPIAR LIGK++GDI++V  P GE T +I++V
Sbjct: 121 SNESPIARVLIGKKVGDIVNVPLPVGEMTVKIVKV 155


>gi|212692849|ref|ZP_03300977.1| hypothetical protein BACDOR_02348 [Bacteroides dorei DSM 17855]
 gi|237709534|ref|ZP_04540015.1| transcription elongation factor GreA [Bacteroides sp. 9_1_42FAA]
 gi|237724871|ref|ZP_04555352.1| transcription elongation factor GreA [Bacteroides sp. D4]
 gi|265754743|ref|ZP_06089795.1| transcription elongation factor GreA [Bacteroides sp. 3_1_33FAA]
 gi|212664638|gb|EEB25210.1| hypothetical protein BACDOR_02348 [Bacteroides dorei DSM 17855]
 gi|229436609|gb|EEO46686.1| transcription elongation factor GreA [Bacteroides dorei 5_1_36/D4]
 gi|229456590|gb|EEO62311.1| transcription elongation factor GreA [Bacteroides sp. 9_1_42FAA]
 gi|263234857|gb|EEZ20425.1| transcription elongation factor GreA [Bacteroides sp. 3_1_33FAA]
          Length = 154

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 102/152 (67%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ ++ +EL++ +  ERP+I+ AI+EAR  GDLSENAEY AAKE Q L E ++++
Sbjct: 3   YMSEEGYKQLIEELKYLESVERPKIVSAIAEARDKGDLSENAEYDAAKEAQGLLEMKISQ 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L++ I  A++ID S M+ D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 63  LKSTIGDAKIIDTSKMNADTVQILTKVELKNVKTGMKMVYTIVAESEANLKLGKISVNTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++GD+  +  P G+ + E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEITIPQGKISLEVVNISF 154


>gi|150003999|ref|YP_001298743.1| transcription elongation factor GreA [Bacteroides vulgatus ATCC
           8482]
 gi|254880754|ref|ZP_05253464.1| transcription elongation factor GreA [Bacteroides sp. 4_3_47FAA]
 gi|294778035|ref|ZP_06743469.1| putative transcription elongation factor GreA [Bacteroides vulgatus
           PC510]
 gi|319639765|ref|ZP_07994495.1| transcription elongation factor GreA [Bacteroides sp. 3_1_40A]
 gi|149932423|gb|ABR39121.1| transcription elongation factor GreA [Bacteroides vulgatus ATCC
           8482]
 gi|254833547|gb|EET13856.1| transcription elongation factor GreA [Bacteroides sp. 4_3_47FAA]
 gi|294448093|gb|EFG16659.1| putative transcription elongation factor GreA [Bacteroides vulgatus
           PC510]
 gi|317388582|gb|EFV69431.1| transcription elongation factor GreA [Bacteroides sp. 3_1_40A]
          Length = 154

 Score =  136 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 102/152 (67%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ ++ +EL++ +  ERP+I+ AI+EAR  GDLSENAEY AAKE Q L E ++++
Sbjct: 3   YMSEEGYKQLIEELKYLESVERPKIVSAIAEARDKGDLSENAEYDAAKEAQGLLEMKISQ 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L++ I  A++ID S M+ D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 63  LKSTIGDAKIIDTSKMNADTVQILTKVELKNAKTGMKMVYTIVAESEANLKLGKISVNTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++GD+  +  P G+ + E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEITIPQGKISLEVVNISF 154


>gi|90412476|ref|ZP_01220479.1| transcription elongation factor GreA [Photobacterium profundum
           3TCK]
 gi|90326513|gb|EAS42919.1| transcription elongation factor GreA [Photobacterium profundum
           3TCK]
          Length = 157

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 107/158 (67%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G   +++EL    +  RP I KAI EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTVRGEQTLREELEVLLK-RRPIISKAIGEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ ++VID++ M    ++ FG TV L++ N+ D+  Y IVGD EAD++  L+
Sbjct: 60  QIRDIEYKLSVSQVIDVTKMENTGKVIFGTTVKLIDINTDDEVMYCIVGDDEADIKKNLI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK  GD +S+  PGG K +EI QV +I
Sbjct: 120 SVNSPIARGLIGKLEGDEVSIFTPGGVKEFEIEQVQYI 157


>gi|58699052|ref|ZP_00373893.1| transcription elongation factor GreA [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630273|ref|YP_002727064.1| transcription elongation factor GreA [Wolbachia sp. wRi]
 gi|58534429|gb|EAL58587.1| transcription elongation factor GreA [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225592254|gb|ACN95273.1| transcription elongation factor GreA [Wolbachia sp. wRi]
          Length = 164

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/160 (45%), Positives = 112/160 (70%), Gaps = 4/160 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           +++K P+T +GF+ +Q EL   ++E+ P +I+AIS+AR  GDLSENAEY AA+E     E
Sbjct: 5   IINKFPMTREGFENMQAELEKLKEEK-PSVIQAISDARDQGDLSENAEYHAARERLGFIE 63

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV---EKNSGDKKNYQIVGDQEADVQS 117
           GR+ E+E+ ++ AEVI++  +SGD + FGATV+L    + N   +  Y++VG+ EADV  
Sbjct: 64  GRIMEIESKLSHAEVIEVKNLSGDSVMFGATVTLSMLSDNNGEVEYVYKVVGEYEADVSK 123

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            L+S SSP+  ALIGK++G+ + V  P GEK Y+I+++ +
Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPNGEKLYKIVKIEF 163


>gi|254428856|ref|ZP_05042563.1| transcription elongation factor GreA subfamily [Alcanivorax sp.
           DG881]
 gi|196195025|gb|EDX89984.1| transcription elongation factor GreA subfamily [Alcanivorax sp.
           DG881]
          Length = 153

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 70/153 (45%), Positives = 111/153 (72%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+KG   +++EL   ++E+RPRI  AI+EAR +GDL ENAEY AA+E Q   EGR+ ++
Sbjct: 1   MTAKGAKALREELEKLKKEDRPRISAAIAEAREHGDLKENAEYHAAREQQGFCEGRIGDI 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ A++IDI T+    ++ FG TV++++ ++ + K YQIVGD EA+++ G +S++SP
Sbjct: 61  EGKLSNAQIIDIQTIENTGKVIFGVTVTIIDVDTDETKVYQIVGDDEANIKEGKLSVNSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IAR LIG+E GD++ ++ PGG + YE+ QV  I
Sbjct: 121 IARGLIGREEGDVVQIDTPGGTREYEVDQVEHI 153


>gi|229918442|ref|YP_002887088.1| transcription elongation factor GreA [Exiguobacterium sp. AT1b]
 gi|229469871|gb|ACQ71643.1| transcription elongation factor GreA [Exiguobacterium sp. AT1b]
          Length = 157

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T  G  KI+ EL   +   R  +++ I  AR +GDLSENAEY AAKE Q + 
Sbjct: 1   MAEKQHYMTLDGKAKIEHELNELKTVRRKEVVENIKIARDFGDLSENAEYDAAKEEQAMV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+A+LE ++  A +I         ++ G TV+   +   + + Y IVG  EAD  +G 
Sbjct: 61  EGRIAQLEEMLRNAVIIQDDAGDNSVVSIGKTVTFFIQEDNEDETYTIVGGAEADPFTGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+G+ +GD+++V  PGG+   EI ++ 
Sbjct: 121 ISNESPIAKALLGRTIGDVVTVQTPGGDMVVEIKEIK 157


>gi|308047929|ref|YP_003911495.1| transcription elongation factor GreB [Ferrimonas balearica DSM
           9799]
 gi|307630119|gb|ADN74421.1| transcription elongation factor GreB [Ferrimonas balearica DSM
           9799]
          Length = 161

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G++ ++ EL++  +EERPR+ +++SEA A GD SENAEY   K+     +
Sbjct: 1   MKKADLITKDGWNALEAELKYLWKEERPRVTQSVSEAAALGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V++       ++ FGA V L   + GDKK Y++VG  E DV+ G +
Sbjct: 61  RRVRFLSKRMEVLRVVEPDPRQEGKVYFGAWVELENDD-GDKKRYRLVGPDEFDVKVGKI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+GK + D + V  P G++ + I ++ +
Sbjct: 120 SIDSPLARALLGKAVDDEVKVRTPNGDQLFYINEIRY 156


>gi|300725195|ref|YP_003714523.1| transcription elongation factor and transcript cleavage
           [Xenorhabdus nematophila ATCC 19061]
 gi|297631740|emb|CBJ92459.1| transcription elongation factor and transcript cleavage
           [Xenorhabdus nematophila ATCC 19061]
          Length = 165

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  + ERP + +A+SEA A GD SENAEY   K+     +
Sbjct: 1   MTKSHYITREGWHTLDQELKYLWKIERPNVTQAVSEAAALGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V +  +    +  +++VG  E D     +
Sbjct: 61  RRVRFLSKRLDILQIVDPDPRQEGKVFFGAWVKVENEQGE-EHIFRLVGPDEFDPAKKWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+GK++ D ++V  P G  TY I Q+ +
Sbjct: 120 SIDSPVARALLGKQVDDEVTVMTPNGMATYWIRQIGY 156


>gi|116492493|ref|YP_804228.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC
           25745]
 gi|116102643|gb|ABJ67786.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC
           25745]
          Length = 160

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 103/158 (65%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D+   P+T  G  K+++EL   + + RP++I+ I  AR++GDLSEN+EY++AK+ Q++
Sbjct: 1   MADEKTYPMTLDGKAKLEEELETLKTKTRPQVIERIKIARSFGDLSENSEYESAKDEQSM 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+  +E+++  A++ID   ++GD ++ G  V   E    + + Y IVG  EAD  +G
Sbjct: 61  VESRINTVEHMLHYAQIIDNDDIAGDEVSLGRVVEFKELPDEEPEEYTIVGAAEADPMTG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA+AL+GK++GD +S+  PGG+   +IL V 
Sbjct: 121 KISNDSPIAKALLGKKVGDEVSIATPGGDMKVKILTVK 158


>gi|152991056|ref|YP_001356778.1| transcription elongation factor GreA [Nitratiruptor sp. SB155-2]
 gi|166200682|sp|A6Q4L2|GREA_NITSB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|151422917|dbj|BAF70421.1| transcription elongation factor GreA [Nitratiruptor sp. SB155-2]
          Length = 163

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 105/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K P+T  G++KIQ+E    + EERP++++ I  A+ +GDL ENAEY AAKE     +
Sbjct: 1   MEQKEPMTQYGYEKIQKEFEALK-EERPKVVEEIERAKEHGDLRENAEYHAAKERLAFID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ EL +++ RA+VID S +  D++ FG+TV L++    ++  Y IVG  E++ + GL+
Sbjct: 60  ARLTELSDLLARAQVIDPSKLPHDKVGFGSTVKLLDIEEEEEIEYTIVGSTESNPEHGLI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S ++P+AR LIGKE GD I+V  P GE  +E+L+V +
Sbjct: 120 SYNTPLARQLIGKEEGDEITVKLPKGEIDFEVLEVYY 156


>gi|221065450|ref|ZP_03541555.1| transcription elongation factor GreB [Comamonas testosteroni KF-1]
 gi|220710473|gb|EED65841.1| transcription elongation factor GreB [Comamonas testosteroni KF-1]
          Length = 188

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+ +I+ EL      ERP+I++ +  A + GD SEN +Y   K+     + R+
Sbjct: 28  KNYITPQGYQRIKDELLDLIDNERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D +  +  D++ FGATVS V+   G ++   I+G  EAD     VS 
Sbjct: 88  RFLTKRLEIAEVVDPAVHAGSDQVFFGATVSYVDDE-GVERTITIMGIDEADSAQNQVSW 146

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +P++RAL+   +GD +++  P G +  EIL V +
Sbjct: 147 IAPVSRALLKARVGDEVALPTPAGVRMLEILDVSY 181


>gi|226309768|ref|YP_002769662.1| transcription elongation factor [Brevibacillus brevis NBRC 100599]
 gi|226092716|dbj|BAH41158.1| transcription elongation factor [Brevibacillus brevis NBRC 100599]
          Length = 158

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 89/156 (57%), Gaps = 1/156 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T +G  K++QEL   +  +R  +   I EA ++GD+SEN+EY+ AK  Q   
Sbjct: 1   MSEKEVILTPEGLTKLEQELEDLKTVKRKEVAARIKEAISFGDISENSEYEEAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A +I    +    ++ G+ V L +   GD  +Y IVG  E+D  +  
Sbjct: 61  EGRILTLEKMLRNARIITNEDVDTGVVSVGSRVKLKDLEFGDVMDYTIVGSAESDPMNNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SP+ +AL+GK  G I+ VN P G   YEIL +
Sbjct: 121 ISNESPVGQALLGKAKGAIVDVNVPAGVIQYEILDI 156


>gi|150014996|ref|YP_001307250.1| transcription elongation factor GreA [Clostridium beijerinckii
           NCIMB 8052]
 gi|229485763|sp|A6LPL4|GREA_CLOB8 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|149901461|gb|ABR32294.1| transcription elongation factor GreA [Clostridium beijerinckii
           NCIMB 8052]
          Length = 160

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 89/154 (57%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             +  +T +G  K++ EL + +  +R  I + I  A  YGDLSEN+EY  AK  Q   EG
Sbjct: 4   SKQYVMTYEGVKKLESELEYLKTVKRKEITEKIKIALGYGDLSENSEYDEAKNDQAFTEG 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +LEN++  A V+D S +  D ++ G+ V + +    ++  Y IVG  EAD  +  +S
Sbjct: 64  RIIQLENMLKNAVVVDESEIPSDIVSVGSKVKVKDYEFDEEVEYSIVGSAEADPMNFKIS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+  AL+GK++GD++ V  P G   +EIL +
Sbjct: 124 NESPVGNALVGKKVGDVVEVTVPDGVNKFEILGI 157


>gi|255011567|ref|ZP_05283693.1| putative transcription elongation factor [Bacteroides fragilis
           3_1_12]
 gi|313149395|ref|ZP_07811588.1| transcription elongation factor greA [Bacteroides fragilis 3_1_12]
 gi|313138162|gb|EFR55522.1| transcription elongation factor greA [Bacteroides fragilis 3_1_12]
          Length = 154

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 97/152 (63%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ K+  EL+  +  ERP+I  AI+EAR  GDLSENAEY AAKE Q + E R+ +
Sbjct: 3   YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ +I  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+S+P
Sbjct: 63  LKAVIADAKIIDESKLKTDSVQILNKVELKNTKNGMKMTYTIVSESEANLKEGKISVSTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++GD+  +  P G+ + E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEIQVPQGKISLEVVNISF 154


>gi|228999165|ref|ZP_04158747.1| Transcription elongation factor greA [Bacillus mycoides Rock3-17]
 gi|228760782|gb|EEM09746.1| Transcription elongation factor greA [Bacillus mycoides Rock3-17]
          Length = 158

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/152 (39%), Positives = 93/152 (61%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T +G  K++ E+   +   R  +++ I  AR++GDLSEN+EY AAK+ Q   EGR+ 
Sbjct: 7   YPMTQEGKQKLENEIEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 66

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LEN+I  A +I+ +      +  G TV   E   GD++ Y IVG  EAD   G +S  S
Sbjct: 67  QLENMIRNAVIIEDNGEESTVVTLGKTVVFKELPDGDEEAYTIVGSAEADPFEGRISNDS 126

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 127 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 158


>gi|169794963|ref|YP_001712756.1| transcription elongation factor GreA [Acinetobacter baumannii AYE]
 gi|184159251|ref|YP_001847590.1| transcription elongation factor GreA [Acinetobacter baumannii
           ACICU]
 gi|213157626|ref|YP_002320424.1| transcription elongation factor GreA [Acinetobacter baumannii
           AB0057]
 gi|215482514|ref|YP_002324702.1| Transcription elongation factor greA (Transcript cleavage
           factorgreA) [Acinetobacter baumannii AB307-0294]
 gi|260556445|ref|ZP_05828663.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
           19606]
 gi|301346071|ref|ZP_07226812.1| transcription elongation factor GreA [Acinetobacter baumannii
           AB056]
 gi|301511499|ref|ZP_07236736.1| transcription elongation factor GreA [Acinetobacter baumannii
           AB058]
 gi|301595422|ref|ZP_07240430.1| transcription elongation factor GreA [Acinetobacter baumannii
           AB059]
 gi|332855122|ref|ZP_08435705.1| transcription elongation factor GreA [Acinetobacter baumannii
           6013150]
 gi|332868230|ref|ZP_08438072.1| transcription elongation factor GreA [Acinetobacter baumannii
           6013113]
 gi|332876148|ref|ZP_08443930.1| transcription elongation factor GreA [Acinetobacter baumannii
           6014059]
 gi|169147890|emb|CAM85753.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Acinetobacter baumannii AYE]
 gi|183210845|gb|ACC58243.1| Transcription elongation factor [Acinetobacter baumannii ACICU]
 gi|213056786|gb|ACJ41688.1| transcription elongation factor GreA [Acinetobacter baumannii
           AB0057]
 gi|213989115|gb|ACJ59414.1| Transcription elongation factor greA (Transcript cleavage
           factorgreA) [Acinetobacter baumannii AB307-0294]
 gi|260409704|gb|EEX03004.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
           19606]
 gi|322509165|gb|ADX04619.1| greA [Acinetobacter baumannii 1656-2]
 gi|323519193|gb|ADX93574.1| transcription elongation factor GreA [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332727625|gb|EGJ59044.1| transcription elongation factor GreA [Acinetobacter baumannii
           6013150]
 gi|332733491|gb|EGJ64661.1| transcription elongation factor GreA [Acinetobacter baumannii
           6013113]
 gi|332735646|gb|EGJ66691.1| transcription elongation factor GreA [Acinetobacter baumannii
           6014059]
          Length = 158

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/146 (42%), Positives = 96/146 (65%), Gaps = 1/146 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +++EL+  +  ERPRI +AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQRYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A+VID+       R+ FG TV++   ++ ++K Y+IVGD EAD +   +
Sbjct: 61  RIQDIEGKLGAAQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
           S++SPIAR L+GK  GD + +  P G
Sbjct: 121 SVNSPIARGLLGKNEGDEVKITTPQG 146


>gi|295694793|ref|YP_003588031.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912]
 gi|295410395|gb|ADG04887.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912]
          Length = 158

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 94/157 (59%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T  G  K+++EL + +  +R  + + I  A +YGD+SEN+EY+ AK  Q   
Sbjct: 1   MSEKEVLLTPGGLQKLEEELEYLKSVKRREVAERIKTAISYGDISENSEYEDAKNEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A +I  S +  D ++ G+TVSL +   G+   Y IVG  E+D     
Sbjct: 61  EGRIITLEKMLRNARIIKDSDVDTDVVSIGSTVSLKDLEFGEVVEYTIVGSAESDPVENR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ RAL+G+ +G++++V  P G   YEILQ+ 
Sbjct: 121 ISNESPVGRALLGRRVGEVVNVEVPDGVLQYEILQIK 157


>gi|260549215|ref|ZP_05823435.1| transcription elongation factor greA [Acinetobacter sp. RUH2624]
 gi|260407621|gb|EEX01094.1| transcription elongation factor greA [Acinetobacter sp. RUH2624]
          Length = 158

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/146 (42%), Positives = 96/146 (65%), Gaps = 1/146 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +++EL+  +  ERPRI +AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQRYPMTPEGKIALEKELQHLKSVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A+VID+       R+ FG TV++   ++ ++K Y+IVGD EAD +   +
Sbjct: 61  RIQDIEGKLGAAQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
           S++SPIAR L+GK  GD + +  P G
Sbjct: 121 SVNSPIARGLLGKNEGDEVKITTPQG 146


>gi|194017086|ref|ZP_03055698.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M) [Bacillus
           pumilus ATCC 7061]
 gi|194010954|gb|EDW20524.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M) [Bacillus
           pumilus ATCC 7061]
          Length = 157

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 99/157 (63%), Gaps = 3/157 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K+++EL   +  +R  +++ I  AR++GDLSEN+EY +AKE Q  
Sbjct: 1   MAQEKVFPMTEEGKRKLEEELEHLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  L+N+I  A++I+    S      G TV+ VE   G++++Y IVG  EAD   G
Sbjct: 61  VEGRITTLDNMIRNAKIIEDEGNSNIVS-LGKTVTFVELPDGEEESYTIVGSAEADPFEG 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SPIA++L+GK++ D ++V  PGGE   +I+++
Sbjct: 120 KISNDSPIAKSLLGKQVDDKVTVQTPGGEMFVQIVKI 156


>gi|225375161|ref|ZP_03752382.1| hypothetical protein ROSEINA2194_00785 [Roseburia inulinivorans DSM
           16841]
 gi|225213035|gb|EEG95389.1| hypothetical protein ROSEINA2194_00785 [Roseburia inulinivorans DSM
           16841]
          Length = 159

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/155 (38%), Positives = 93/155 (60%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K  +T +G  K++ EL+  +   R  +   I EAR  GDLSENAEY AAK+ Q   E
Sbjct: 1   MDKKNILTYQGLKKLEDELQELKVVRRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ ++E I+  AEV+    +  D+I+ G  V +++    ++  Y+IVG  EA+   G +
Sbjct: 61  ARIEDIEKILKNAEVVVEEEVDLDKISIGCNVKILDIEFDEELEYKIVGSTEANSLKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SP+ +AL+GK++GDI+ V  PGGE  Y++L +
Sbjct: 121 SNESPVGKALLGKQVGDIVKVETPGGEFEYKVLSI 155


>gi|53715604|ref|YP_101596.1| transcription elongation factor GreA [Bacteroides fragilis YCH46]
 gi|60683548|ref|YP_213692.1| putative transcription elongation factor [Bacteroides fragilis NCTC
           9343]
 gi|253566584|ref|ZP_04844037.1| transcription elongation factor GreA [Bacteroides sp. 3_2_5]
 gi|265767453|ref|ZP_06095119.1| transcription elongation factor GreB [Bacteroides sp. 2_1_16]
 gi|52218469|dbj|BAD51062.1| transcription elongation factor GreA [Bacteroides fragilis YCH46]
 gi|60494982|emb|CAH09800.1| putative transcription elongation factor [Bacteroides fragilis NCTC
           9343]
 gi|251944756|gb|EES85231.1| transcription elongation factor GreA [Bacteroides sp. 3_2_5]
 gi|263252758|gb|EEZ24270.1| transcription elongation factor GreB [Bacteroides sp. 2_1_16]
 gi|301165062|emb|CBW24630.1| putative transcription elongation factor [Bacteroides fragilis
           638R]
          Length = 154

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 97/152 (63%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ K+  EL+  +  ERP+I  AI+EAR  GDLSENAEY AAKE Q + E ++ +
Sbjct: 3   YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ +I  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+S+P
Sbjct: 63  LKAVIADAKIIDESKLKTDSVQILNKVELKNTKNGMKMTYTIVSESEANLKEGKISVSTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++GD+  +  P G+ + E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEIQVPQGKISLEVVNISF 154


>gi|299529934|ref|ZP_07043362.1| Kelongation factor GreB [Comamonas testosteroni S44]
 gi|298722106|gb|EFI63035.1| Kelongation factor GreB [Comamonas testosteroni S44]
          Length = 188

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+ +I+ EL      ERP+I++ +  A + GD SEN +Y   K+     + R+
Sbjct: 28  KNYITPQGYQRIKDELLDLIDNERPKIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D    +  D++ FGATVS V+   G ++   I+G  EAD     VS 
Sbjct: 88  RFLTKRLEIAEVVDPGVHAGSDQVFFGATVSYVDDE-GVERTITIMGIDEADSAQNQVSW 146

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +P++RAL+   +GD +++  P G +  EIL V +
Sbjct: 147 IAPVSRALLKARVGDEVALPTPAGVRMLEILDVSY 181


>gi|148263835|ref|YP_001230541.1| transcription elongation factor GreB [Geobacter uraniireducens Rf4]
 gi|146397335|gb|ABQ25968.1| transcription elongation factor GreB [Geobacter uraniireducens Rf4]
          Length = 170

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 85/153 (55%), Gaps = 1/153 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T +G   ++ EL +  + ERPR+ +A+S+A A GD SENAEY   K+     + R+ 
Sbjct: 13  NYITPEGAKCLRDELDYLWKVERPRVTQAVSDAAAEGDRSENAEYIYGKKRLREIDRRVR 72

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   +    V++       +I FGA V  +E   GD+  Y+IVG  E DV  G +S+ S
Sbjct: 73  FLIKRLDALTVVNNQPERQGKIFFGAWV-RLETEDGDEVVYRIVGPDEFDVAKGFISMDS 131

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+ RAL+GK+ GD + V  P G  T+ +L + +
Sbjct: 132 PVGRALLGKQEGDEVVVRRPAGATTFTVLDISY 164


>gi|32034024|ref|ZP_00134268.1| COG0782: Transcription elongation factor [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208420|ref|YP_001053645.1| transcription elongation factor GreA [Actinobacillus
           pleuropneumoniae L20]
 gi|165976363|ref|YP_001651956.1| transcription elongation factor GreA [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303252987|ref|ZP_07339142.1| transcription elongation factor GreA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307245856|ref|ZP_07527941.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247932|ref|ZP_07529966.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250188|ref|ZP_07532146.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307254829|ref|ZP_07536655.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259271|ref|ZP_07541000.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261432|ref|ZP_07543105.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|126097212|gb|ABN74040.1| transcription elongation factor GreA [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165876464|gb|ABY69512.1| transcription elongation factor [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|302648178|gb|EFL78379.1| transcription elongation factor GreA [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306853216|gb|EFM85436.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855582|gb|EFM87751.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306857787|gb|EFM89885.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306862200|gb|EFM94168.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866638|gb|EFM98497.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306868889|gb|EFN00693.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 158

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G + +++EL + +   RP+II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A++ID++ M+ + ++ FGATVSLV  ++ ++  Y+IVGD EA+++ GL+
Sbjct: 61  RIQEIEGKLGNAQIIDVTKMANNGKVIFGATVSLVNADTDEEVTYRIVGDDEANIKEGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKE+ D +S+  PGG+  ++I+ V +I
Sbjct: 121 SVNSPIARGLVGKEVDDSVSIVTPGGKVEFDIINVEYI 158


>gi|169824685|ref|YP_001692296.1| transcription elongation factor [Finegoldia magna ATCC 29328]
 gi|302380203|ref|ZP_07268675.1| transcription elongation factor GreA [Finegoldia magna
           ACS-171-V-Col3]
 gi|303234962|ref|ZP_07321586.1| transcription elongation factor GreA [Finegoldia magna BVS033A4]
 gi|254799559|sp|B0S216|GREA_FINM2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|167831490|dbj|BAG08406.1| transcription elongation factor [Finegoldia magna ATCC 29328]
 gi|302311986|gb|EFK93995.1| transcription elongation factor GreA [Finegoldia magna
           ACS-171-V-Col3]
 gi|302493817|gb|EFL53599.1| transcription elongation factor GreA [Finegoldia magna BVS033A4]
          Length = 159

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK   +T +G D+ ++EL + +   R  I + I  AR +GDLSENAEY  AK  Q   
Sbjct: 1   MADKEFLLTQEGLDQHKEELEFLKTTRRTEIAEKIKVARGFGDLSENAEYDEAKNEQAQV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+  LEN++  A+VI       D +  G+TV+    N   +  YQIVG  E+D  +G 
Sbjct: 61  EERINYLENLLLHAKVIQDDENQKDVVTVGSTVTYKNLNLNKEMTYQIVGTAESDPFAGR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP  +AL+  ++GD   V  PGG    ++L V 
Sbjct: 121 ISNESPTGKALLNLKVGDTTKVETPGGIVELKVLTVK 157


>gi|212711646|ref|ZP_03319774.1| hypothetical protein PROVALCAL_02721 [Providencia alcalifaciens DSM
           30120]
 gi|212685748|gb|EEB45276.1| hypothetical protein PROVALCAL_02721 [Providencia alcalifaciens DSM
           30120]
          Length = 161

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   + +T +G+D + +EL++  +EERP + +++SEA A GD SENAEY   K+     +
Sbjct: 1   MNKSLLITREGWDALDKELKYLWKEERPLVTQSVSEAAAQGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   + +  +++       R+ FGA V L + N   +  ++IVG  E D     +
Sbjct: 61  RRIRFLSKRLDQLRIVEPDPRQEGRVFFGAWVKLEDDNENIRI-FRIVGADEFDPAKQWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D + V  PGG+ TY IL++ +
Sbjct: 120 SIDSPVARALIGKQVEDEVVVTTPGGKITYFILEISY 156


>gi|298292332|ref|YP_003694271.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
 gi|296928843|gb|ADH89652.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
          Length = 152

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 85/151 (56%), Positives = 119/151 (78%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G   ++ EL+ RQQ +R RII AISEARA+GDLSENAEY AAKE Q LNEGR+AEL
Sbjct: 1   MTPGGHAALEIELKQRQQVDRQRIISAISEARAHGDLSENAEYHAAKEQQALNEGRIAEL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E+ ++RAE+ID++ +SGD + FGATV+L+++++ ++K++QIVGD EAD ++G +SISSP+
Sbjct: 61  EDKLSRAEIIDVAKLSGDTVMFGATVTLIDEDTEEEKSWQIVGDMEADAKAGRISISSPL 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARALIGK+ G  + V  P G ++YEI  V +
Sbjct: 121 ARALIGKKRGTSVEVVTPKGARSYEIAAVRF 151


>gi|329956657|ref|ZP_08297230.1| transcription elongation factor GreA [Bacteroides clarus YIT 12056]
 gi|328524029|gb|EGF51105.1| transcription elongation factor GreA [Bacteroides clarus YIT 12056]
          Length = 154

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 97/152 (63%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G++K+  +L+  +  ERP+I+ AI+EAR  GDLSENAEY AAKE Q L E ++ +
Sbjct: 3   YMSEEGYNKLLADLKQLETVERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ +I  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 63  LKQVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++GD+  +  P G    E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGMINLEVVNISF 154


>gi|253681347|ref|ZP_04862145.1| transcription elongation factor GreA [Clostridium botulinum D str.
           1873]
 gi|253562585|gb|EES92036.1| transcription elongation factor GreA [Clostridium botulinum D str.
           1873]
          Length = 159

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 93/155 (60%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             +  +T++G  K++ EL + +  +R  I + I  A +YGDLSEN+EY  AK  Q   EG
Sbjct: 4   SKQYIMTAEGVKKLEDELEYLKTTKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEG 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ++EN++  A V+D S +  D ++ G+ V + + +  ++ ++ IVG  EAD     +S
Sbjct: 64  RIVQIENMLRNANVVDESEIPKDVVSVGSIVKVKDYDFDEEIDFHIVGSAEADPMENKIS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+  ALIGK++GDI+ V  P G   +EIL++ 
Sbjct: 124 NESPVGSALIGKKVGDIVDVPVPDGISKFEILEIR 158


>gi|152980351|ref|YP_001353931.1| GreA transcription elongation factor [Janthinobacterium sp.
           Marseille]
 gi|151280428|gb|ABR88838.1| GreA transcription elongation factor [Janthinobacterium sp.
           Marseille]
          Length = 157

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/154 (51%), Positives = 109/154 (70%), Gaps = 1/154 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T  G + +++EL   + +ERP +I AI+EARA GDLSENA+Y AAKE Q+  EGR+A+
Sbjct: 4   PITPYGANVLKEELHRLKTKERPWVINAIAEARAQGDLSENADYDAAKEKQSFIEGRIAD 63

Query: 66  LENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +E  +  ++VID +T  +  R+ F ATV L +  SG+K  YQIVG  EAD++   VSI+S
Sbjct: 64  IEGKLGTSQVIDPTTLEAEGRVVFAATVDLEDLESGEKVTYQIVGIDEADLKEKKVSITS 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           PIARA+IGK  GD++ V AP G + YEILQV +I
Sbjct: 124 PIARAMIGKYAGDVVGVEAPAGLREYEILQVRYI 157


>gi|300774299|ref|ZP_07084163.1| transcription elongation factor GreA [Chryseobacterium gleum ATCC
           35910]
 gi|300506943|gb|EFK38077.1| transcription elongation factor GreA [Chryseobacterium gleum ATCC
           35910]
          Length = 156

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/151 (37%), Positives = 101/151 (66%), Gaps = 1/151 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            VT +G +K++ EL   +  ERP+I + I+EAR  GDLSENAEY AAKE Q + E R+++
Sbjct: 4   YVTKEGLEKMKAELEQLETVERPKITQQIAEARDKGDLSENAEYDAAKEAQGMLEMRISK 63

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+++I+ +++ID S +   +++   TV L    +  ++ + +V D E+D+++G +S+++P
Sbjct: 64  LKDVISTSKIIDESQLDTSKVSILTTVKLKNNATKQEQVFTLVPDNESDLKTGKISVNTP 123

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQV 155
           IA+ L+GK +G+   +  P G K ++E+L +
Sbjct: 124 IAKGLLGKAIGETAEITLPNGNKLSFEVLDI 154


>gi|255527650|ref|ZP_05394510.1| transcription elongation factor GreA [Clostridium carboxidivorans
           P7]
 gi|296186915|ref|ZP_06855316.1| transcription elongation factor GreA [Clostridium carboxidivorans
           P7]
 gi|255508663|gb|EET85043.1| transcription elongation factor GreA [Clostridium carboxidivorans
           P7]
 gi|296048629|gb|EFG88062.1| transcription elongation factor GreA [Clostridium carboxidivorans
           P7]
          Length = 160

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/159 (37%), Positives = 93/159 (58%), Gaps = 3/159 (1%)

Query: 1   MVD---KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M +   K  +T +G  K++ EL + +  +R  I + I  A ++GDLSEN+EY  AK  Q 
Sbjct: 1   MSEAKKKYIMTYEGVKKLESELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQA 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
             EGR+ +LEN++  A ++D S +  D ++ G+ V + + +  ++  Y IVG  EAD  +
Sbjct: 61  FVEGRIIQLENMLKNATIVDESEIPLDVVSVGSIVKVKDYDFDEEVEYNIVGSAEADPMN 120

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             +S  SP+ R L+GK++GDII V  P G   YEIL + 
Sbjct: 121 NKISNESPVGRGLVGKKIGDIIEVQVPDGVSKYEILGIR 159


>gi|300173857|ref|YP_003773023.1| transcription elongation factor greA [Leuconostoc gasicomitatum LMG
           18811]
 gi|299888236|emb|CBL92204.1| Transcription elongation factor greA [Leuconostoc gasicomitatum LMG
           18811]
          Length = 160

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/159 (41%), Positives = 101/159 (63%), Gaps = 3/159 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T++G +K+Q EL      +RP I K I  AR+YGDLSEN+EYQ+AK+ Q  
Sbjct: 1   MSEEKVFPMTAEGRNKLQAELEDLITNQRPEITKRIQIARSYGDLSENSEYQSAKDEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  L+ +I  AE+ID +  + D ++ G TV+  E  + D + Y IVG  E+D  +G
Sbjct: 61  VEGRIQTLKKMIENAEIIDPNATAADEVSLGKTVTFKELPNEDAETYAIVGSTESDPVAG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
            +S  S +A AL+GK++GD ++V  P G+  + EIL+V 
Sbjct: 121 KISNESAMAVALLGKKVGDKVNVPLPSGDNISVEILKVE 159


>gi|56963364|ref|YP_175095.1| transcription elongation factor GreA [Bacillus clausii KSM-K16]
 gi|81366412|sp|Q5WHM1|GREA_BACSK RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|56909607|dbj|BAD64134.1| transcriptional elongation factor GreA [Bacillus clausii KSM-K16]
          Length = 158

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/158 (39%), Positives = 101/158 (63%), Gaps = 2/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T++G  K+++EL +     R  +++ I  AR++GDLSEN+EY +AKE Q  
Sbjct: 1   MAEEKKHYMTAEGKKKLEEELHYLITTRRKEVVERIKVARSFGDLSENSEYDSAKEDQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+A+LE +I  A +I+   + G+ ++ G TV L+E   G+++ Y IVG  E+D   G
Sbjct: 61  VEGRIAQLEKMIRNAVMIENEKVDGNVVSLGKTVRLMELPDGEEEEYTIVGSAESDPFEG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+A++L+GK + D + VN PGGE   EIL++ 
Sbjct: 121 KISNDSPMAQSLLGKTVNDRVVVNTPGGEMEVEILEIR 158


>gi|47093417|ref|ZP_00231182.1| transcription elongation factor GreA [Listeria monocytogenes str.
           4b H7858]
 gi|300764839|ref|ZP_07074829.1| transcription elongation factor GreA [Listeria monocytogenes FSL
           N1-017]
 gi|47018196|gb|EAL08964.1| transcription elongation factor GreA [Listeria monocytogenes str.
           4b H7858]
 gi|300514515|gb|EFK41572.1| transcription elongation factor GreA [Listeria monocytogenes FSL
           N1-017]
          Length = 152

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 92/150 (61%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G  K++ EL+  +  +R  +++ I  AR++GDLSEN+EY +AK+ Q   EGR+  +
Sbjct: 1   MTLDGKAKLENELQELKTVKRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRITTI 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           EN+I  A++ID +      +  G TV+ +E   G+++ Y IVG  EAD   G +S  SPI
Sbjct: 61  ENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDGEEETYTIVGSAEADPFEGKISNDSPI 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
           A+ L+G + G+ +++  P G+ + +I ++ 
Sbjct: 121 AKGLLGHKEGEEVTIQTPAGDMSVKIEKIT 150


>gi|332284095|ref|YP_004416006.1| transcription elongation factor GreB [Pusillimonas sp. T7-7]
 gi|330428048|gb|AEC19382.1| transcription elongation factor GreB [Pusillimonas sp. T7-7]
          Length = 193

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T+ G+ +++ EL     EERP +++ +S A + GD SEN +Y   K+     + RM
Sbjct: 37  KNYITTAGYQRLRAELAHLMNEERPEVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRM 96

Query: 64  AELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV++  +  + D++ FGATV   +K         IVG  EA+   G +S 
Sbjct: 97  RFLTKRLEVAEVVNPATQPNKDQVFFGATVEYSDKAGE-TFRVTIVGVDEAEPLQGRISW 155

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+    GD +++  P G    +IL+V +
Sbjct: 156 ISPVARALLKAREGDTVTLRTPAGVDELDILEVSY 190


>gi|332885551|gb|EGK05797.1| hypothetical protein HMPREF9456_02061 [Dysgonomonas mossii DSM
           22836]
          Length = 156

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 98/154 (63%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T++G+ K+++E+   +  ERP I K I+EAR  GDLSENAEY AAKE Q L E 
Sbjct: 1   MAITYMTAEGYKKLKEEINTLETTERPAISKQIAEARDKGDLSENAEYDAAKEAQGLLEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++A+++N++  A +I+  ++  D +     V++    +  K  Y IV + EA+++   ++
Sbjct: 61  KIAQMKNLLANARLINEDSIGTDVVQILNKVTIRNTKNNQKMTYTIVAESEANLKENKMA 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +++PIA+ L+GK++GD+  +  P G  ++EI+ +
Sbjct: 121 VNTPIAQGLMGKKVGDVAEIKVPSGIMSFEIMDI 154


>gi|317120993|ref|YP_004100996.1| transcription elongation factor GreA [Thermaerobacter marianensis
           DSM 12885]
 gi|315590973|gb|ADU50269.1| transcription elongation factor GreA [Thermaerobacter marianensis
           DSM 12885]
          Length = 159

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 98/156 (62%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  ++ ++++G  K+++EL++ +  +R  + + I +AR +GD+SEN+EY+ AK  Q   E
Sbjct: 1   MDKELLLSAEGLRKLEEELQYLKSVKRREVAQRIKQAREFGDISENSEYEEAKNEQAFVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE ++  A +++   +   ++  G+TV L + ++G++  Y IVG  EAD  +  +
Sbjct: 61  GRIIELEKMLRNARIVNDEEIDPTKVNIGSTVHLKDVDTGEEVQYTIVGSNEADPAALRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SP+ +AL G+ +G+++ V  P G   YEI+++ 
Sbjct: 121 SYQSPVGKALFGRSVGEVVEVKVPAGTLRYEIVRIE 156


>gi|152977979|ref|YP_001343608.1| transcription elongation factor GreB [Actinobacillus succinogenes
           130Z]
 gi|150839702|gb|ABR73673.1| transcription elongation factor GreB [Actinobacillus succinogenes
           130Z]
          Length = 158

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G++ + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWNALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D  +    ++ FGA V L  ++   K+ Y+IVG  E D     +
Sbjct: 61  RRVRFLMKRLEVLQIVDYHSRQEGKVFFGAWVELENEDGEAKQ-YRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+ SP+ARALIGK + D + V  P G+ T  I ++ +
Sbjct: 120 SVDSPVARALIGKTVDDEVRVETPAGKVTLYINEIWY 156


>gi|297588655|ref|ZP_06947298.1| transcription elongation factor GreA [Finegoldia magna ATCC 53516]
 gi|297574028|gb|EFH92749.1| transcription elongation factor GreA [Finegoldia magna ATCC 53516]
          Length = 159

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK   +T +G D+ ++EL + +   R  I + I  AR +GDLSENAEY  AK  Q   
Sbjct: 1   MADKEFLLTQEGLDQHKEELEFLKTTRRTEIAEKIKVARGFGDLSENAEYDEAKNEQAQV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+  LEN++  A+VI       D +  G+TV+     S  +  Y+IVG  E+D  +G 
Sbjct: 61  EERINYLENLLLYAKVIQDDENQKDVVTVGSTVTYKNLKSNKEMTYKIVGTAESDPFAGR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP  +AL+  ++GD  +V  PGG    ++L V 
Sbjct: 121 ISNESPTGKALLNLKVGDTTTVETPGGIVELKVLTVK 157


>gi|164686645|ref|ZP_02210673.1| hypothetical protein CLOBAR_00238 [Clostridium bartlettii DSM
           16795]
 gi|164604374|gb|EDQ97839.1| hypothetical protein CLOBAR_00238 [Clostridium bartlettii DSM
           16795]
          Length = 158

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K   +T +G++K+++EL + +  +R  + + +  A ++GDLSENAEY  AK  Q   
Sbjct: 1   MVEKQELLTQEGYNKLEEELEYLKAVKRKEVAERLKVAISFGDLSENAEYDEAKNEQAKL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E ++ +L+  + +A +ID S +  + +  G+ V + + +  ++  Y IVG  EAD   G 
Sbjct: 61  EEQILKLDEKLRKAVIIDESQIDLNIVTVGSIVKVFDFDFDEEVEYVIVGSAEADPFEGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +AL+G  +G+ + V  P G   +++L++ 
Sbjct: 121 ISNESPVGKALLGARVGETVEVQVPDGVSKFKVLEIR 157


>gi|312131392|ref|YP_003998732.1| transcription elongation factor grea [Leadbetterella byssophila DSM
           17132]
 gi|311907938|gb|ADQ18379.1| transcription elongation factor GreA [Leadbetterella byssophila DSM
           17132]
          Length = 156

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 95/155 (61%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +     T +G+D ++ +L   + + R  + KA++EA+  GDLSENAEY AAK+ Q L E 
Sbjct: 1   MSYQYYTQEGYDNLKNKLNDLKTKGRREVSKALAEAKDKGDLSENAEYDAAKDAQALLET 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +A+LE +  +A ++D +T+   +++   TV +    +     Y +V ++EAD++ G +S
Sbjct: 61  EIAKLEELFAKARILDENTIDTSKVSLMTTVKIKNLKNKATMKYTLVAEEEADLKQGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           I+SP A+ L+GK++GD   + APGG    EIL++ 
Sbjct: 121 INSPFAKGLLGKKVGDKADIQAPGGVVEVEILEIT 155


>gi|126642719|ref|YP_001085703.1| transcription elongation factor GreA [Acinetobacter baumannii ATCC
           17978]
 gi|239503380|ref|ZP_04662690.1| transcription elongation factor GreA [Acinetobacter baumannii
           AB900]
 gi|126388603|gb|ABO13101.1| transcription elongation factor [Acinetobacter baumannii ATCC
           17978]
          Length = 158

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/146 (42%), Positives = 96/146 (65%), Gaps = 1/146 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +++EL+  +  ERPRI +AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQRYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A+VID+       R+ FG TV++   ++ ++K Y+IVGD EAD +   +
Sbjct: 61  RIQDIEGKLGAAQVIDVKDLEQNGRVVFGVTVTIENLDTEERKTYKIVGDDEADFKINKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
           S++SPIAR L+GK  GD + +  P G
Sbjct: 121 SVNSPIARGLLGKNEGDEVKITTPQG 146


>gi|42520503|ref|NP_966418.1| transcription elongation factor GreA [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410242|gb|AAS14352.1| transcription elongation factor GreA [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 164

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/160 (45%), Positives = 112/160 (70%), Gaps = 4/160 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           +++K P+T +GF+ +Q EL   ++E+ P +I+AIS+AR  GDLSENAEY AA+E     E
Sbjct: 5   IINKFPMTREGFENMQAELEKLKEEK-PSVIQAISDARDQGDLSENAEYHAARERLGFIE 63

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV---EKNSGDKKNYQIVGDQEADVQS 117
           GR+ E+E+ ++ AEVI++  +SGD + FGATV+L    + N   +  Y++VG+ EADV  
Sbjct: 64  GRIMEIESKLSHAEVIEVKNLSGDSVIFGATVTLRMLSDNNGEVEYVYKVVGEYEADVSK 123

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            L+S SSP+  ALIGK++G+ + V  P GEK Y+I+++ +
Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPNGEKLYKIVKIEF 163


>gi|170693644|ref|ZP_02884802.1| transcription elongation factor GreB [Burkholderia graminis C4D1M]
 gi|170141426|gb|EDT09596.1| transcription elongation factor GreB [Burkholderia graminis C4D1M]
          Length = 206

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 75/154 (48%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL      ERP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 46  KNYITPAGYRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 105

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AE++D S        F           GD+    IVG  E D+  G VS  
Sbjct: 106 RFLTKRLDLAEIVDSSKQENVDQVFFGATVEYATQDGDEHTVTIVGIDEVDLDIGHVSWI 165

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+  ++GD +++  P G +  +IL V +
Sbjct: 166 SPIARALLKAKVGDTVTLYTPAGPQPIDILDVKY 199


>gi|163942129|ref|YP_001647013.1| transcription elongation factor GreA [Bacillus weihenstephanensis
           KBAB4]
 gi|229135202|ref|ZP_04264001.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST196]
 gi|163864326|gb|ABY45385.1| transcription elongation factor GreA [Bacillus weihenstephanensis
           KBAB4]
 gi|228648244|gb|EEL04280.1| Transcription elongation factor greA [Bacillus cereus BDRD-ST196]
          Length = 175

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 96/158 (60%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++ E+   +   R  +++ I  AR++GDLSEN+EY AAK+ Q  
Sbjct: 18  MATEKTYPMTQEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAF 77

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN+I  A +I+ +      +  G TV+  E   GD++ Y IVG  EAD   G
Sbjct: 78  VEGRITQLENMIRNAVIIEDNGEESTVVTLGKTVTFKELPGGDEEAYIIVGSAEADPFEG 137

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 138 RISNDSPIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 175


>gi|94498550|ref|ZP_01305105.1| GreA/GreB family elongation factor [Sphingomonas sp. SKA58]
 gi|94421993|gb|EAT07039.1| GreA/GreB family elongation factor [Sphingomonas sp. SKA58]
          Length = 158

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/156 (48%), Positives = 113/156 (72%), Gaps = 2/156 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K+P+   G+DK+  +LR  +  ERP I+ AI EARA+GDLSENAEY AAKE Q   E  
Sbjct: 5   EKMPMLQMGYDKLNAQLRELKA-ERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEAT 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + +LE+ ++RA+VID  T+SG++I FGATV+L++++      YQIVG  EAD ++G++S 
Sbjct: 64  INDLEDKLSRAQVIDPKTLSGNKIIFGATVTLMDEDDKPV-KYQIVGQAEADAKAGMISY 122

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SSP+ RALIG+E+GD + V+ P G+K Y + ++ ++
Sbjct: 123 SSPLGRALIGREVGDEVEVSVPSGDKFYLVDKIEFL 158


>gi|224023650|ref|ZP_03642016.1| hypothetical protein BACCOPRO_00357 [Bacteroides coprophilus DSM
           18228]
 gi|224016872|gb|EEF74884.1| hypothetical protein BACCOPRO_00357 [Bacteroides coprophilus DSM
           18228]
          Length = 154

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 98/152 (64%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ K+  ELR+ +  ERP+++ AI+EAR  GDLSENAEY AAKE Q L E ++ +
Sbjct: 3   YMSEEGYQKLVAELRYLESVERPKVVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINQ 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I  A++ID S +  D +   + V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 63  LKATIGDAKIIDTSKLKADTVQILSRVELKNVKTGMKMAYTIVSESEANLKQGKISVTTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++GD+  +  P G+ + EI  + +
Sbjct: 123 IAQGLLGKKVGDVAEITIPQGKISLEITGISF 154


>gi|328554350|gb|AEB24842.1| transcription elongation factor GreA [Bacillus amyloliquefaciens
           TA208]
 gi|328912754|gb|AEB64350.1| Transcription elongation factor greA [Bacillus amyloliquefaciens
           LL3]
          Length = 157

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 101/157 (64%), Gaps = 3/157 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++QEL   +  +R  +++ I  AR++GDLSEN+EY +AKE Q  
Sbjct: 1   MAQEKVFPMTQEGKQKLEQELEQLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  LEN+I  A++I+    S + +  G TVS +E   G++++Y IVG  EAD   G
Sbjct: 61  VEGRITTLENMIRNAKIIEDDGGS-NVVGLGKTVSFIELPDGEEESYTIVGSAEADPFEG 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SPIA++L+G+++ + ++V  PGGE   +I+++
Sbjct: 120 KISNDSPIAKSLLGRKVDEEVTVQTPGGEMLVKIVKI 156


>gi|257093983|ref|YP_003167624.1| transcription elongation factor GreB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046507|gb|ACV35695.1| transcription elongation factor GreB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 188

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 83/155 (53%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T  G  +++ EL    + ERP+++  +  A + GD SENA+Y   K      + R+
Sbjct: 30  RNYITPGGHARLRSELEHLLRVERPQVVGVVQWAASNGDRSENADYIYGKRRLREIDRRI 89

Query: 64  AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AE++D +     +++ FGATV++ ++    +  YQIVG  E D   G +S 
Sbjct: 90  RFLTRRLDLAEIVDPARRENTEQVFFGATVTICDEQGL-ENTYQIVGVDETDSARGHISW 148

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+    GD +  ++P G +  E++ V +
Sbjct: 149 VSPLARALLKAREGDTVRFHSPLGWRQVEVVAVDY 183


>gi|228993117|ref|ZP_04153039.1| Transcription elongation factor greA [Bacillus pseudomycoides DSM
           12442]
 gi|229006713|ref|ZP_04164347.1| Transcription elongation factor greA [Bacillus mycoides Rock1-4]
 gi|228754574|gb|EEM03985.1| Transcription elongation factor greA [Bacillus mycoides Rock1-4]
 gi|228766576|gb|EEM15217.1| Transcription elongation factor greA [Bacillus pseudomycoides DSM
           12442]
          Length = 161

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/152 (39%), Positives = 93/152 (61%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T +G  K++ E+   +   R  +++ I  AR++GDLSEN+EY AAK+ Q   EGR+ 
Sbjct: 10  YPMTQEGKQKLENEIEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LEN+I  A +I+ +      +  G TV   E   GD++ Y IVG  EAD   G +S  S
Sbjct: 70  QLENMIRNAVIIEDNGEESTVVTLGKTVVFKELPDGDEEAYTIVGSAEADPFEGRISNDS 129

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 130 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 161


>gi|268678843|ref|YP_003303274.1| transcription elongation factor GreA [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616874|gb|ACZ11239.1| transcription elongation factor GreA [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 167

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 97/157 (61%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K P+T  G+ K+  EL   ++ +RP  +  +  AR++GDL ENAEY AAKE     +
Sbjct: 1   MNTKEPMTEYGYKKLTDELSDLKKRQRPETVIELDIARSHGDLKENAEYHAAKEKLAFID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+AEL ++++R++VID ST   D++ FG+T++L    + ++  Y IVG  E++   GL+
Sbjct: 61  SRIAELSDLVSRSQVIDPSTYEHDKVRFGSTITLENLETNEEVTYSIVGSTESNPDLGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S  SP+++ L+G+ + + + +  P G + Y IL + +
Sbjct: 121 SYHSPLSKQLMGRCVDEEVMIKLPVGTQEYAILNITY 157


>gi|222151496|ref|YP_002560652.1| transcription elongation factor [Macrococcus caseolyticus JCSC5402]
 gi|254799561|sp|B9E6Y8|GREA_MACCJ RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|222120621|dbj|BAH17956.1| transcription elongation factor [Macrococcus caseolyticus JCSC5402]
          Length = 158

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 96/156 (61%), Gaps = 2/156 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  + P+T +GFDK++ EL   +   RP +++ I  AR++GDLSEN+EY AAK+ Q   E
Sbjct: 3   MQKEYPMTQEGFDKLEVELEHLKTVRRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFVE 62

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             + ++E ++  A +I+      +    G TV+  E    ++++Y+IVG  EAD   G +
Sbjct: 63  QEITKIEMMLRHAVIIEDDGSKSEV-QIGRTVTFAEVPGNEEESYKIVGSAEADPFEGKI 121

Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
           S  SPIA+AL+GK++GD ++V  P G E   +I+++
Sbjct: 122 SNESPIAKALLGKKVGDEVNVPLPNGNEMRVKIVEI 157


>gi|168701830|ref|ZP_02734107.1| transcription elongation factor greA [Gemmata obscuriglobus UQM
           2246]
          Length = 161

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 95/153 (62%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D+IP+T +G+DK++ EL   +  E   I K ++ AR  GDLSENAEY AA+E Q + + R
Sbjct: 4   DRIPMTREGYDKLKVELDRLRGAEMIEITKRVAAARDLGDLSENAEYHAAREDQGILQAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  L + ++RA ++D S +  D +AFG+ V +++ +  +++ +++V   + +   G +  
Sbjct: 64  IDALSDRLSRAVIVDTSNLPKDTVAFGSKVRVLDVDVDEEETFELVSPGQENPDKGRILT 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SPI + LIG++ GD + +  P G   ++IL++
Sbjct: 124 GSPIGQGLIGRKKGDTVEIQVPSGTIKFKILEI 156


>gi|32472148|ref|NP_865142.1| transcription elongation factor greA [Rhodopirellula baltica SH 1]
 gi|77416496|sp|Q7UVA0|GREA_RHOBA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|32397520|emb|CAD72826.1| transcription elongation factor greA [Rhodopirellula baltica SH 1]
          Length = 159

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 103/157 (65%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+ +P+T +G++KI+ E+   + EE P I++ I+EAR  GDL ENAEY A +E Q +  
Sbjct: 1   MVESVPMTREGYNKIKAEINRMENEEMPMIVQKIAEAREEGDLKENAEYHAQRENQGMLM 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++ EL + I RA +ID+S++  D + FG TV++ +   GD++ + +VG  + D  SG +
Sbjct: 61  AKINELRDKIARASIIDVSSLPKDEVVFGCTVTVEDVAYGDEEQFTLVGAGDEDYDSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            ++SP  + L+GK++G+   V+ P G+  ++IL++ +
Sbjct: 121 LVTSPFGQGLVGKKVGETAEVDVPAGKLKFKILKIEF 157


>gi|229543750|ref|ZP_04432810.1| transcription elongation factor GreA [Bacillus coagulans 36D1]
 gi|229328170|gb|EEN93845.1| transcription elongation factor GreA [Bacillus coagulans 36D1]
          Length = 156

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 100/158 (63%), Gaps = 4/158 (2%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T  G +K++QEL + +  +R  +++ I  AR++GDLSEN+EY +AKE Q  
Sbjct: 1   MAQEKVYPMTQDGKEKLEQELEYLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  +EN+I  A++I+      D ++ G +V+ VE   G+++ Y IVG  EAD   G
Sbjct: 61  VEGRITTIENMIRNAKIIEDDGT--DTVSLGKSVTFVELPDGEEETYTIVGSAEADPFEG 118

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA++L+GK +G+ ++V  PGG+   +I+ + 
Sbjct: 119 KISNDSPIAKSLLGKSVGEEVTVQTPGGDMRVKIISIQ 156


>gi|330447154|ref|ZP_08310804.1| transcription elongation factor GreB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328491345|dbj|GAA05301.1| transcription elongation factor GreB [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 160

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL    +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MRTNLVTREGYNKLKQELDSLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +VID S     ++ FGA V +   +   K  ++IVG  E   ++  +S
Sbjct: 61  RVRFLRKRLDVLKVIDYSPQQDGKVFFGAWVEIENDDGDQK-TFRIVGPDEIYGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+ D I V  P G+K + I  + +
Sbjct: 120 IDSPMARALLSKEVDDDIVVTTPLGKKEWFINDIRY 155


>gi|99034137|ref|ZP_01314235.1| hypothetical protein Wendoof_01000975 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 164

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 112/160 (70%), Gaps = 4/160 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           +++K P+T +GF+ IQ EL   ++E+ P +I+AIS+AR  GDLSENAEY AA+E     E
Sbjct: 5   IINKFPMTREGFEDIQAELEKLKEEK-PSVIQAISDARDQGDLSENAEYHAARERLGFIE 63

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV---EKNSGDKKNYQIVGDQEADVQS 117
           GR+ E+E+ ++ AEVI++  +SGD + FGATV+L    + N   +  Y++VG+ EADV  
Sbjct: 64  GRIMEIESKLSHAEVIEVKNLSGDSVIFGATVTLRMLSDNNGEVEYVYKVVGEYEADVSK 123

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            L+S SSP+  ALIGK++G+ + V  P GEK Y+I+++ +
Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPNGEKLYKIVKIEF 163


>gi|42522667|ref|NP_968047.1| hypothetical protein Bd1119 [Bdellovibrio bacteriovorus HD100]
 gi|39573863|emb|CAE79040.1| greB [Bdellovibrio bacteriovorus HD100]
          Length = 183

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 92/155 (59%), Gaps = 1/155 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K  +T +G  K++ E       ERP++++ ++ A + GD SENA+YQ  K      + R
Sbjct: 29  NKNYITPEGLAKLKAEYHALMHVERPKLVEVVAWAASNGDRSENADYQYGKRRLREIDRR 88

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  L   I  AE++D   M G  + F ATV+LV ++ GD+  YQIVG+ E D ++G +S 
Sbjct: 89  VHFLTKRIEDAELVDPKQMKGTTVLFSATVTLVNED-GDEVVYQIVGEDEFDPKAGKISW 147

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+GK+LGD + +  P GE+   I  V +
Sbjct: 148 KSPVARALLGKKLGDEVRIIKPAGEEFVTIENVEF 182


>gi|190150271|ref|YP_001968796.1| transcription elongation factor GreA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303251385|ref|ZP_07337562.1| transcription elongation factor GreA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252570|ref|ZP_07534465.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307256998|ref|ZP_07538774.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307263610|ref|ZP_07545224.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189915402|gb|ACE61654.1| transcription elongation factor GreA [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302649739|gb|EFL79918.1| transcription elongation factor GreA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859975|gb|EFM91993.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306864482|gb|EFM96389.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306871073|gb|EFN02803.1| Transcription elongation factor greA [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 158

 Score =  134 bits (337), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G + +++EL + +   RP+II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A++ID++ M+ + ++ FGATVSLV  ++ ++  Y+IVGD EA+++ GL+
Sbjct: 61  RIQEIEGKLGNAQIIDVTKMTNNGKVIFGATVSLVNADTEEEVTYRIVGDDEANIKEGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR L+GKE+ D +S+  PGG+  ++I+ V +I
Sbjct: 121 SVNSPIARGLVGKEVDDSVSIVTPGGKVEFDIINVEYI 158


>gi|167763703|ref|ZP_02435830.1| hypothetical protein BACSTE_02081 [Bacteroides stercoris ATCC
           43183]
 gi|167697819|gb|EDS14398.1| hypothetical protein BACSTE_02081 [Bacteroides stercoris ATCC
           43183]
          Length = 154

 Score =  134 bits (337), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 97/152 (63%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G++K+  +L+  +  ERP+I+ AI+EAR  GDLSENAEY AAKE Q L E ++ +
Sbjct: 3   YMSEEGYNKLLADLKQLETIERPKIVAAIAEARDKGDLSENAEYDAAKEAQGLLEMKINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ +I  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 63  LKQVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++GD+  +  P G    E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGIINLEVVNISF 154


>gi|160887890|ref|ZP_02068893.1| hypothetical protein BACUNI_00293 [Bacteroides uniformis ATCC 8492]
 gi|270294851|ref|ZP_06201052.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317477839|ref|ZP_07937025.1| transcription elongation factor GreA [Bacteroides sp. 4_1_36]
 gi|156862576|gb|EDO56007.1| hypothetical protein BACUNI_00293 [Bacteroides uniformis ATCC 8492]
 gi|270274098|gb|EFA19959.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316905975|gb|EFV27743.1| transcription elongation factor GreA [Bacteroides sp. 4_1_36]
          Length = 154

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 92/152 (60%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++  G+ K+  EL+  +  ERP+I  AI+EAR  GDLSENAEY AAKE Q + E ++  
Sbjct: 3   YMSEDGYKKLMAELKHLETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINN 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 63  LKLTIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMVYTIVSESEANLKEGKISVNTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++GDI  +  P G    E++ + +
Sbjct: 123 IAQGLLGKKVGDIAEIKVPQGMINLEVVNISF 154


>gi|39996303|ref|NP_952254.1| transcription elongation factor GreB [Geobacter sulfurreducens PCA]
 gi|39983183|gb|AAR34577.1| transcription elongation factor GreB [Geobacter sulfurreducens PCA]
 gi|298505313|gb|ADI84036.1| transcription elongation factor GreB [Geobacter sulfurreducens
           KN400]
          Length = 161

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/153 (34%), Positives = 87/153 (56%), Gaps = 1/153 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T +G  K++ EL W  +EERPR+ + +++A A GD SENAEY   K+     + R+ 
Sbjct: 6   NYITPEGAKKLRTELTWLWKEERPRVTQGVADAAAEGDRSENAEYIYGKKRLREIDRRIR 65

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   +    V+D    + D++ FGA V L  +  GD+  Y++VG  E D   G +S+ S
Sbjct: 66  FLTQRLDALTVVDAPPPATDKVFFGAWVRLENEE-GDEVVYRVVGPDETDAAKGHISLDS 124

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+ ++L+G+  GD + V  P GE  + +L+V +
Sbjct: 125 PMGKSLLGRREGDEVHVRRPAGEAVFTVLEVGY 157


>gi|254252970|ref|ZP_04946288.1| Transcription elongation factor [Burkholderia dolosa AUO158]
 gi|124895579|gb|EAY69459.1| Transcription elongation factor [Burkholderia dolosa AUO158]
          Length = 187

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 74/154 (48%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL      ERP +++ +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLKDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           GD+    IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQENTDQVFFGATVDYATPDGDEHTITIVGIDEVDLDRGHVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARALI  ++GD +++  P G +  ++L V +
Sbjct: 148 SPIARALIKAKVGDTVTLMTPAGPQPIDVLDVRY 181


>gi|302343822|ref|YP_003808351.1| GreA/GreB family elongation factor [Desulfarculus baarsii DSM 2075]
 gi|301640435|gb|ADK85757.1| GreA/GreB family elongation factor [Desulfarculus baarsii DSM 2075]
          Length = 155

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 101/155 (65%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++  +T +G  ++Q+EL   ++ E P  +KAI EARA+GDLSENAEY AAKE   +   
Sbjct: 1   MERKLLTREGQIRLQRELDHLRKVELPASVKAIEEARAHGDLSENAEYHAAKERNAIVAA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++AEL++ +  +EVID    +  R+ FG  V++ +  + ++ +YQIVG  E+D   G +S
Sbjct: 61  KIAELKSELALSEVIDPLPQADGRVVFGCKVTIYDSETDEEASYQIVGAAESDASQGRMS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           ++SP+ +AL+GKE GD + V  PGG +  EI+ V 
Sbjct: 121 MTSPMGQALLGKEEGDEVKVQTPGGLRVIEIVSVQ 155


>gi|255536258|ref|YP_003096629.1| Transcription elongation factor GreA [Flavobacteriaceae bacterium
           3519-10]
 gi|255342454|gb|ACU08567.1| Transcription elongation factor GreA [Flavobacteriaceae bacterium
           3519-10]
          Length = 170

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 102/151 (67%), Gaps = 1/151 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            VT +G DK++ EL   +  ERP+I + I+EAR  GDLSENAEY AAKE Q + E ++++
Sbjct: 18  YVTKEGLDKMKAELEQLETIERPKITQQIAEARDKGDLSENAEYDAAKEAQGMLEMKISK 77

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           +++I+  A+VID + +   +++   TV L   ++  ++ + +V D E+D++SG +S+++P
Sbjct: 78  IKDIVINAKVIDETQLDTSKVSILTTVRLKNNDTKAEQKFTLVPDNESDLKSGRISVNTP 137

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQV 155
           IA+ L+GK +G+   +  P G K ++E+L++
Sbjct: 138 IAKGLLGKTVGEKADIVLPNGNKLSFEVLEI 168


>gi|153952824|ref|YP_001393589.1| transcription elongation factor GreA [Clostridium kluyveri DSM 555]
 gi|219853489|ref|YP_002470611.1| hypothetical protein CKR_0146 [Clostridium kluyveri NBRC 12016]
 gi|229485766|sp|A5N4L0|GREA_CLOK5 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799556|sp|B9DY72|GREA_CLOK1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|146345705|gb|EDK32241.1| GreA1 [Clostridium kluyveri DSM 555]
 gi|219567213|dbj|BAH05197.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 159

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 89/154 (57%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            K  +T +G  K++ EL + +  +R  I + I  A ++GDLSEN+EY +AK  Q   EGR
Sbjct: 5   KKYVMTYEGIKKLENELEYLKTVKRKEITEKIKVALSFGDLSENSEYDSAKNEQAFVEGR 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + +LEN++  A ++D   +  D +  G+ V + + +  ++  Y IVG  EAD  +  +S 
Sbjct: 65  IVQLENMLKNASMVDEDEVPLDIVGIGSIVKVKDYDLDEEVEYLIVGSAEADPINNKISN 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ + L+GK+ GD+I +  P G   Y+IL + 
Sbjct: 125 ESPVGKGLVGKKPGDVIEIQVPDGVSKYKILNIR 158


>gi|237746721|ref|ZP_04577201.1| transcription elongation factor and transcript cleavage
           [Oxalobacter formigenes HOxBLS]
 gi|229378072|gb|EEO28163.1| transcription elongation factor and transcript cleavage
           [Oxalobacter formigenes HOxBLS]
          Length = 184

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 75/154 (48%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  K++ EL      ERP++++ +S A + GD SEN +Y   K      + R+
Sbjct: 27  KNYITPAGLKKLKDELLELIDTERPQVVQTVSWAASNGDRSENGDYIYGKRRLREIDRRI 86

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   I  AE  D S   G+   F       E+ +G++    IVG  E D   G +S  
Sbjct: 87  RFLIKRIEAAEEFDPSVHYGNDQIFFGATVTYERQNGEENTVTIVGIDEFDPLQGKISWI 146

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+AR LI    GD ++++ P G +   IL+V +
Sbjct: 147 SPMARTLIKAHEGDTVTLHTPAGIEELVILEVSY 180


>gi|239817299|ref|YP_002946209.1| transcription elongation factor GreB [Variovorax paradoxus S110]
 gi|239803876|gb|ACS20943.1| transcription elongation factor GreB [Variovorax paradoxus S110]
          Length = 190

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL     EERP++++A+  A   GD SEN +Y   K+     + R+
Sbjct: 30  KNYMTPAGYARLRDELLQLMDEERPKVVEAVHWAAKNGDRSENGDYLYGKKRLREIDRRI 89

Query: 64  AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV D S     D++ FGATV  V++  GD+++  I+G  EAD     VS 
Sbjct: 90  RFLTKRLEIAEVTDPSVHHGSDQVFFGATVRYVDET-GDERSVTILGIDEADSAQSQVSW 148

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SPIARAL+    GD++ +  PGG    E+L V +
Sbjct: 149 ISPIARALLKSREGDVVKLVTPGGAHEVELLSVSY 183


>gi|149378112|ref|ZP_01895832.1| transcription elongation factor GreB [Marinobacter algicola DG893]
 gi|149357597|gb|EDM46099.1| transcription elongation factor GreB [Marinobacter algicola DG893]
          Length = 156

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 96/156 (61%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++   +T +G+ ++QQEL +  ++ERP + K +  A + GD SENA+YQ  K+     + 
Sbjct: 1   MNTNVITPEGYAELQQELDYLWRKERPEVTKKVQWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L N +++  V++ +++   ++ FGA V+LV+++     ++++VG  E   +   VS
Sbjct: 61  RVRYLRNRLSKLRVVEYNSVQEGKVYFGAWVTLVDED-EKTLSFRMVGPDEIYGKKNYVS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +++P+A+A +GK +GD + V  P  ++ ++I ++ +
Sbjct: 120 VNAPVAKACLGKSVGDTVVVRTPENQREWDISKIEY 155


>gi|300814578|ref|ZP_07094829.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon
           836 str. F0141]
 gi|300511197|gb|EFK38446.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon
           836 str. F0141]
          Length = 157

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           +DK I  T +G +KI+ E+ + +   R  + + I  A  YGDLSEN+EY  AK  Q   E
Sbjct: 1   MDKDIFFTPEGLEKIENEIEYLKTVRRKEVAERIKVALGYGDLSENSEYDEAKNEQAYVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+A+LE +   A+VID   ++ D +  G+TV + + +SGD+  Y IVG  EAD  SG +
Sbjct: 61  ERIAKLEMMARNAKVIDEKDLNHDMVNVGSTVVVKDLDSGDEDEYTIVGSAEADPLSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S  SP+   LIG ++GDI  +  P G   Y++  + +
Sbjct: 121 SNESPVGAGLIGLKVGDITEIEIPDGIIKYKVCAISF 157


>gi|322381160|ref|ZP_08055163.1| transcription elongation factor GreA-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321154736|gb|EFX47007.1| transcription elongation factor GreA-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 170

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T +G  K++ EL   +  +R  + + I  A  YGD+SEN+EY+ AK  Q   
Sbjct: 13  MSEKEVILTQEGLSKLENELDHLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 72

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A +I+   +  D ++ G+TV++ +   GD   Y IVG  E+D     
Sbjct: 73  EGRIITLEKMLRNARIINSDDVDTDTVSVGSTVTMKDLEFGDTVEYTIVGTAESDPFLNK 132

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +A++GK+ G I+ VN P G   YEI+ + 
Sbjct: 133 ISNESPVGKAILGKQKGAIVDVNVPAGVIKYEIIDIK 169


>gi|261403947|ref|YP_003240188.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10]
 gi|329925508|ref|ZP_08280382.1| transcription elongation factor GreA [Paenibacillus sp. HGF5]
 gi|261280410|gb|ACX62381.1| transcription elongation factor GreA [Paenibacillus sp. Y412MC10]
 gi|328939791|gb|EGG36131.1| transcription elongation factor GreA [Paenibacillus sp. HGF5]
          Length = 158

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK + +T  G  K++ EL   +  +R  + + I  A  YGD+SEN+EY+ AK  Q   
Sbjct: 1   MSDKEVILTQDGLKKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A +I+   ++ D +  G TV + +   GD   Y IVG  E+D  +  
Sbjct: 61  EGRIITLEKMLRNARIINNDDINTDVVGVGNTVIVEDLEFGDTMEYTIVGTAESDPLNNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +A+IGK+ G ++ VN P G   Y+I+ + 
Sbjct: 121 ISNESPVGKAIIGKQKGSVVDVNVPAGVIQYKIVDIK 157


>gi|282882521|ref|ZP_06291142.1| transcription elongation factor GreA [Peptoniphilus lacrimalis
           315-B]
 gi|281297663|gb|EFA90138.1| transcription elongation factor GreA [Peptoniphilus lacrimalis
           315-B]
          Length = 157

 Score =  134 bits (336), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           +DK I  T +G +KI+ E+ + +   R  + + I  A  YGDLSEN+EY  AK  Q   E
Sbjct: 1   MDKDIFFTPEGLEKIENEIEYLKTVRRKEVAERIKVALGYGDLSENSEYDEAKNEQAYVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+A+LE +   A+VID   ++ D +  G+TV + + +SGD+  Y IVG  EAD  SG +
Sbjct: 61  ERIAKLEMMARNAKVIDEKDLNNDMVNVGSTVVVKDLDSGDEDEYTIVGSAEADPLSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S  SP+   LIG ++GDI  +  P G   Y++  + +
Sbjct: 121 SNESPVGAGLIGLKVGDITEIEIPDGIIKYKVCAISF 157


>gi|187777498|ref|ZP_02993971.1| hypothetical protein CLOSPO_01073 [Clostridium sporogenes ATCC
           15579]
 gi|187774426|gb|EDU38228.1| hypothetical protein CLOSPO_01073 [Clostridium sporogenes ATCC
           15579]
          Length = 160

 Score =  134 bits (336), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 2/157 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +G  K+++EL + +  +R  I + I  A ++GDLSEN+EY  AK  Q  
Sbjct: 1   MSEAKKYVMTYEGVKKLEEELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN++  A ++D + +  D ++ G+ V + +    ++  Y IVG  EAD  + 
Sbjct: 61  AEGRIIQLENMLKNASIVDENEVPKDVVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNN 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+   LIGK++GDII V  P G   YEIL+V
Sbjct: 121 KISNESPVGNGLIGKKVGDIIEVTVPDGVSKYEILEV 157


>gi|171057421|ref|YP_001789770.1| transcription elongation factor GreB [Leptothrix cholodnii SP-6]
 gi|170774866|gb|ACB33005.1| transcription elongation factor GreB [Leptothrix cholodnii SP-6]
          Length = 189

 Score =  134 bits (336), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 83/155 (53%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T +G+  ++ EL      ERPR+++A+S A   GD SEN +Y   K+     + R+
Sbjct: 30  RNYMTPQGWSSLRAELMTLLDVERPRVVEAVSWAAKNGDRSENGDYIYGKKRLREIDRRI 89

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV D S     D++ FGATV+      GD++   I G  E+D   G VS 
Sbjct: 90  RFLTKRLDIAEVADPSLHHGSDQVFFGATVTYANSR-GDERTVTIKGIDESDSLKGEVSW 148

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SPIARALI    GD + +  PGG +  E+L+V +
Sbjct: 149 VSPIARALIKAREGDEVQLMTPGGLERLEVLEVSY 183


>gi|160897466|ref|YP_001563048.1| transcription elongation factor GreB [Delftia acidovorans SPH-1]
 gi|160363050|gb|ABX34663.1| transcription elongation factor GreB [Delftia acidovorans SPH-1]
          Length = 188

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 88/155 (56%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +GF++++ EL      ERPRI++ +  A + GD SEN +Y   K+     + R+
Sbjct: 27  KNYITPQGFERLKTELLDLIDNERPRIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86

Query: 64  AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D S  +  ++I FGATV+ V+     ++   I+G  EAD     VS 
Sbjct: 87  RFLTKRLEIAEVVDPSVHAGSEQIYFGATVTYVDDEGE-ERTITIMGIDEADSARQQVSW 145

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +P++RAL+   +GD +++  P G +T E+L+V +
Sbjct: 146 IAPVSRALLKARVGDEVALPTPAGVRTLEVLEVTY 180


>gi|319900857|ref|YP_004160585.1| transcription elongation factor GreA [Bacteroides helcogenes P
           36-108]
 gi|319415888|gb|ADV42999.1| transcription elongation factor GreA [Bacteroides helcogenes P
           36-108]
          Length = 151

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 58/151 (38%), Positives = 94/151 (62%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           ++ +G+ K+  EL+  +  ERP+I  AI+EAR  GDLSENAEY AAKE Q + E ++  L
Sbjct: 1   MSEEGYKKLMAELKQLETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINNL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  I  A++ID S +S D +     V L    +G K  Y IV + EA+++ G +S+++PI
Sbjct: 61  KLTIADAKIIDESKLSTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTPI 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           A+ L+GK++GD+  +  P G    E++ + +
Sbjct: 121 AQGLLGKKVGDVAEIKVPQGMIHLEVMNISF 151


>gi|317131159|ref|YP_004090473.1| transcription elongation factor GreA [Ethanoligenens harbinense
           YUAN-3]
 gi|315469138|gb|ADU25742.1| transcription elongation factor GreA [Ethanoligenens harbinense
           YUAN-3]
          Length = 157

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 86/156 (55%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +  +T  G  K++QEL   + E+R  I + I  A ++GDLSEN+EY  AK  Q + E
Sbjct: 1   MAKQYVLTDAGLKKLEQELEQLKTEKRKEIAEKIKVALSFGDLSENSEYDEAKNEQAMVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+A +E ++   ++ID   +  + +  G+ V + +    +   YQIVG  EAD    L+
Sbjct: 61  SRIATIEAMLKNVKLIDDDQLDTEAVNLGSKVQVFDVEFDETVEYQIVGSTEADPDQNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SP+ RAL+G ++GD +    P G   +++L + 
Sbjct: 121 SDESPVGRALLGHKVGDEVEAETPAGVLKFKVLNIT 156


>gi|18311448|ref|NP_563382.1| transcription elongation factor GreA [Clostridium perfringens str.
           13]
 gi|110799156|ref|YP_697154.1| transcription elongation factor GreA [Clostridium perfringens ATCC
           13124]
 gi|110802874|ref|YP_699722.1| transcription elongation factor GreA [Clostridium perfringens
           SM101]
 gi|168206861|ref|ZP_02632866.1| transcription elongation factor GreA [Clostridium perfringens E
           str. JGS1987]
 gi|168211212|ref|ZP_02636837.1| transcription elongation factor GreA [Clostridium perfringens B
           str. ATCC 3626]
 gi|168215146|ref|ZP_02640771.1| transcription elongation factor GreA [Clostridium perfringens CPE
           str. F4969]
 gi|168218226|ref|ZP_02643851.1| transcription elongation factor GreA [Clostridium perfringens NCTC
           8239]
 gi|169343179|ref|ZP_02864200.1| transcription elongation factor GreA [Clostridium perfringens C
           str. JGS1495]
 gi|182625990|ref|ZP_02953753.1| transcription elongation factor GreA [Clostridium perfringens D
           str. JGS1721]
 gi|25452992|sp|Q8XHL7|GREA_CLOPE RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|122956482|sp|Q0SQ85|GREA_CLOPS RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|122958663|sp|Q0TMI6|GREA_CLOP1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|18146132|dbj|BAB82172.1| transcriptional elongation factor [Clostridium perfringens str. 13]
 gi|110673803|gb|ABG82790.1| transcription elongation factor GreA [Clostridium perfringens ATCC
           13124]
 gi|110683375|gb|ABG86745.1| transcription elongation factor GreA [Clostridium perfringens
           SM101]
 gi|169298731|gb|EDS80807.1| transcription elongation factor GreA [Clostridium perfringens C
           str. JGS1495]
 gi|170661751|gb|EDT14434.1| transcription elongation factor GreA [Clostridium perfringens E
           str. JGS1987]
 gi|170710773|gb|EDT22955.1| transcription elongation factor GreA [Clostridium perfringens B
           str. ATCC 3626]
 gi|170713439|gb|EDT25621.1| transcription elongation factor GreA [Clostridium perfringens CPE
           str. F4969]
 gi|177908697|gb|EDT71208.1| transcription elongation factor GreA [Clostridium perfringens D
           str. JGS1721]
 gi|182379757|gb|EDT77236.1| transcription elongation factor GreA [Clostridium perfringens NCTC
           8239]
          Length = 158

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T +G  K++ EL + +  +R  I + I  A  YGDLSEN+EY  AK  Q   
Sbjct: 1   MSEKKHIMTYEGVKKLEDELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNEQAFT 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+ +LEN++  A V+D S +S D +  G+ V +++ +  ++  Y IVG  EAD  +  
Sbjct: 61  EGRIIQLENMLKNAVVVDESEISTDIVTVGSIVKVMDFDFDEEVEYSIVGSAEADPMNFK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+   L+GK++GD++ +  PGG   +E+L + 
Sbjct: 121 ISNESPVGEGLMGKKVGDVVEIEVPGGTTKFEVLGIR 157


>gi|282858005|ref|ZP_06267206.1| transcription elongation factor GreA [Pyramidobacter piscolens
           W5455]
 gi|282584159|gb|EFB89526.1| transcription elongation factor GreA [Pyramidobacter piscolens
           W5455]
          Length = 164

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 98/154 (63%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D + +T +G+DK+  EL+  + EER +I + I EAR++GDLSENAEY AAK+ Q   EG+
Sbjct: 9   DTVLMTQEGYDKLSTELKQLRSEERYKIARRIEEARSFGDLSENAEYAAAKDDQAKLEGK 68

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E  ++RA++ID +++    ++ G TV++++     +  Y IV  +E+D + GL+S 
Sbjct: 69  IQVMEYQLSRAKIIDSASLDNSHVSVGTTVTIMDITHNKEFVYSIVSSEESDPEKGLISS 128

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ RAL+ K +GD + V  P G +   I ++ 
Sbjct: 129 VSPVGRALMNKRVGDEVPVKVPMGIRKLRIRKIR 162


>gi|237713952|ref|ZP_04544433.1| transcription elongation factor greA [Bacteroides sp. D1]
 gi|237722892|ref|ZP_04553373.1| transcription elongation factor greA [Bacteroides sp. 2_2_4]
 gi|262409139|ref|ZP_06085683.1| transcription elongation factor GreB [Bacteroides sp. 2_1_22]
 gi|294647463|ref|ZP_06725046.1| putative transcription elongation factor GreA [Bacteroides ovatus
           SD CC 2a]
 gi|294808933|ref|ZP_06767658.1| putative transcription elongation factor GreA [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298482232|ref|ZP_07000419.1| transcription elongation factor GreA [Bacteroides sp. D22]
 gi|229446108|gb|EEO51899.1| transcription elongation factor greA [Bacteroides sp. D1]
 gi|229447414|gb|EEO53205.1| transcription elongation factor greA [Bacteroides sp. 2_2_4]
 gi|262352886|gb|EEZ01982.1| transcription elongation factor GreB [Bacteroides sp. 2_1_22]
 gi|292637173|gb|EFF55608.1| putative transcription elongation factor GreA [Bacteroides ovatus
           SD CC 2a]
 gi|294443868|gb|EFG12610.1| putative transcription elongation factor GreA [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295085264|emb|CBK66787.1| transcription elongation factor GreA [Bacteroides xylanisolvens
           XB1A]
 gi|298271519|gb|EFI13093.1| transcription elongation factor GreA [Bacteroides sp. D22]
          Length = 176

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 58/150 (38%), Positives = 94/150 (62%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ K+  EL+  +  ERP+I  AI+EAR  GDLSENAEY AAKE Q + E R+ +
Sbjct: 25  YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 84

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 85  LKATIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 144

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+GK++GD+  +  P G+   E++ +
Sbjct: 145 IAQGLLGKKVGDVAEITVPQGKIALEVVNI 174


>gi|319779409|ref|YP_004130322.1| Transcription elongation factor GreB [Taylorella equigenitalis
           MCE9]
 gi|317109433|gb|ADU92179.1| Transcription elongation factor GreB [Taylorella equigenitalis
           MCE9]
          Length = 182

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G++ +++EL      ERP +++ +S A + GD SEN +Y   K+     + R+
Sbjct: 27  KNYMTVTGYNSLRKELSDLVTVERPEVVQVVSWAASNGDRSENGDYIYGKKRLREIDRRI 86

Query: 64  AELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEVID S     DR+ FGATV+ +  N+  +    IVG  EAD  +G +S 
Sbjct: 87  RFLTKRLEIAEVIDPSQQPNKDRVYFGATVTYLNPNND-EVTVTIVGIDEADPLNGKISW 145

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+A+ALI  E G I+++  P G++  E+L++++
Sbjct: 146 ISPVAKALIKSEEGQIVTLKTPNGKQEIEVLEIVY 180


>gi|149927812|ref|ZP_01916063.1| transcription elongation factor GreB [Limnobacter sp. MED105]
 gi|149823434|gb|EDM82665.1| transcription elongation factor GreB [Limnobacter sp. MED105]
          Length = 185

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 78/155 (50%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T KG+ +++ EL    + ERP ++  +S A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYITPKGYRRLRDELTHLVKTERPEVVSVVSWAASNGDRSENGDYLYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L      AEV+D +T       F         + G++   +IVG  E D   G +S  
Sbjct: 89  RFLTKRTEIAEVVDPATQQELESIFFGATVTYINSKGEELTVKIVGVDEVDTAKGHISWI 148

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+ARAL+  + GD++ +  P G    EI++V ++
Sbjct: 149 SPVARALLKAKEGDVVQLMTPAGRDELEIVEVRYV 183


>gi|262276837|ref|ZP_06054630.1| transcription elongation factor [alpha proteobacterium HIMB114]
 gi|262223940|gb|EEY74399.1| transcription elongation factor [alpha proteobacterium HIMB114]
          Length = 158

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 103/158 (65%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK P+T  G  KI+ EL  R+   RP+I++AI+EAR++GDL ENAEY AAKE Q LNE 
Sbjct: 1   MDKQPITLSGLQKIRVELDDRKNNTRPKIVQAIAEARSHGDLKENAEYHAAKEEQGLNER 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ELE  I  A VID++     D++ FGAT+++ +  +  +  Y+IVG  EADV++GL+
Sbjct: 61  RIKELETTIATANVIDVTKLKKDDKVIFGATITVKDLETDKESKYKIVGKDEADVKNGLL 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
              SP+ R  IGK  G+   +  P GEK +EI  V +I
Sbjct: 121 FYQSPMGRGFIGKIKGEFAEIKTPSGEKNFEITNVQYI 158


>gi|228469383|ref|ZP_04054397.1| transcription elongation factor GreA [Porphyromonas uenonis 60-3]
 gi|228309067|gb|EEK17697.1| transcription elongation factor GreA [Porphyromonas uenonis 60-3]
          Length = 156

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 96/155 (61%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+D +   ++  + EERP++ + I+EAR  GDLSENAEY AAKE Q   E 
Sbjct: 1   MGYYYMTQEGYDALNNTIKQLEAEERPKVTQQIAEARDKGDLSENAEYDAAKEAQAHLED 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++A L+  +  A V++ S +  D +     V L+ K  G++K+Y IV D EA+ +   +S
Sbjct: 61  KIAMLKAQLGNARVLEPSQIKTDEVQILNHVRLLNKKKGEEKSYYIVSDAEANFKENKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +++PIA+ L+GK++GD+  +  P G   +EIL++ 
Sbjct: 121 VNTPIAKGLLGKKVGDVAEIQVPAGTLVFEILEIT 155


>gi|330813686|ref|YP_004357925.1| transcription elongation factor GreA [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486781|gb|AEA81186.1| transcription elongation factor GreA [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 158

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 103/158 (65%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T +G +KI+ EL  R+   R +I+ AISEAR++GDL ENAEY AAKE Q LNE 
Sbjct: 1   MEKEPITIQGLEKIKSELDDRKHTTRSKIVMAISEARSHGDLKENAEYHAAKEEQGLNEK 60

Query: 62  RMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ELE  I  AEVIDI    + +++ F +T+ + + +   K  Y+IVG  EADV++GL+
Sbjct: 61  RIQELETSIAMAEVIDIRKIPNDNKVIFSSTIIVKDLDGDKKNTYKIVGRDEADVKNGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
              SP+ R  IGK   D + +  P GEK +EIL V +I
Sbjct: 121 YYKSPLGRGFIGKNKEDFVVIETPSGEKNFEILDVKYI 158


>gi|207723992|ref|YP_002254390.1| transcription elongation factor grea (transcript cleavage
           factorgrea) protein [Ralstonia solanacearum MolK2]
 gi|207742902|ref|YP_002259294.1| transcription elongation factor grea (transcript cleavage
           factorgrea) protein [Ralstonia solanacearum IPO1609]
 gi|206589200|emb|CAQ36162.1| transcription elongation factor grea (transcript cleavage
           factorgrea) protein [Ralstonia solanacearum MolK2]
 gi|206594297|emb|CAQ61224.1| transcription elongation factor grea (transcript cleavage
           factorgrea) protein [Ralstonia solanacearum IPO1609]
          Length = 146

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 77/145 (53%), Positives = 105/145 (72%), Gaps = 1/145 (0%)

Query: 15  IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
           +++EL+  + +ERP ++ AI+EARA GDLSENA+Y AAKE Q   EGR+ E+E+ +  A+
Sbjct: 2   LKEELQRLKTKERPAVVTAIAEARAQGDLSENADYDAAKERQGFIEGRILEIESKLAAAQ 61

Query: 75  VIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
           VID  S  +  RI FGAT+ L + +SG    YQIVGD EAD+ +G +SISSPIARALIGK
Sbjct: 62  VIDPASLDADGRIVFGATIDLEDLDSGKPVTYQIVGDDEADLDTGKISISSPIARALIGK 121

Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158
             GD+ +V APGGE+ YE+  V ++
Sbjct: 122 YEGDVATVVAPGGEREYEVRSVKYL 146


>gi|110835318|ref|YP_694177.1| transcription elongation factor GreB [Alcanivorax borkumensis SK2]
 gi|110648429|emb|CAL17905.1| transcription elongation factor GreB [Alcanivorax borkumensis SK2]
          Length = 171

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G+ K+  EL++  +++RP I +++ EA A GD SENAEY   K+     + R+  
Sbjct: 14  YITVEGYHKLNDELQYLWKQKRPEITQSVQEAAAQGDRSENAEYIYGKKQLREIDRRVRF 73

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +    V+D       R+ FGA V L       +  Y++VG  E D   G +SI +P
Sbjct: 74  LSKRLDDMTVVDRVPEDQSRVFFGAWVELENDTGDTE-TYRLVGPDETDAGRGYISIDAP 132

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +ARAL+ K++ D + V  P GE+   I ++ +
Sbjct: 133 LARALLKKQVDDEVEVRTPAGERCLFINRIWY 164


>gi|301050385|ref|ZP_07197272.1| transcription elongation factor GreB [Escherichia coli MS 185-1]
 gi|300297895|gb|EFJ54280.1| transcription elongation factor GreB [Escherichia coli MS 185-1]
          Length = 161

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156


>gi|169632632|ref|YP_001706368.1| transcription elongation factor GreA [Acinetobacter baumannii SDF]
 gi|238688251|sp|B0VSL8|GREA_ACIBS RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|169151424|emb|CAP00158.1| transcription elongation factor, cleaves 3' nucleotide of paused
           mRNA [Acinetobacter baumannii]
          Length = 158

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/146 (40%), Positives = 94/146 (64%), Gaps = 1/146 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + + P+T +G   +++EL+  +  ERPRI +AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQRYPMTPEGKIALEKELQHLKTVERPRITQAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  +  A+VI +       R+ FG TV++   ++ ++  Y+IVGD EAD +   +
Sbjct: 61  RIQDIEGKLGTAQVIAVKDLEQNGRVVFGVTVTIENLDTEERNTYKIVGDDEADFKINKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGG 146
           S++SPIA  L+GK+ GD + +  P G
Sbjct: 121 SVNSPIALGLLGKKEGDEVKITTPQG 146


>gi|288801019|ref|ZP_06406475.1| transcription elongation factor GreA [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288331953|gb|EFC70435.1| transcription elongation factor GreA [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 155

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 91/150 (60%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+  EL+  +  ERP+   AI+EAR  GDLSEN+EY AAKE Q   E ++ +
Sbjct: 3   YMSQEGYDKLVAELKHLESVERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLESKINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           ++  ++ A+++D S +S D +   + V +    +  K  Y IV + EA+++ G ++I++P
Sbjct: 63  IKVSLSEAKIVDTSLLSADAVQIMSKVVMTNLGNNAKMTYTIVSESEANLKEGKLAITTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+ K++GD + +  P G     I  +
Sbjct: 123 IAQGLLNKKVGDEVEIKIPNGTIKLRIDAI 152


>gi|238026489|ref|YP_002910720.1| transcription elongation factor GreB [Burkholderia glumae BGR1]
 gi|237875683|gb|ACR28016.1| Transcription elongation factor [Burkholderia glumae BGR1]
          Length = 186

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 75/154 (48%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL     EERP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLQLIDEERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G++    IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQESTDQVFFGATVDYATEDGEEHTITIVGVDEVDLDRGHVSWV 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+   +GD +++  PGG +  ++L V +
Sbjct: 148 SPIARALLKARIGDTVTLVTPGGPQPVDVLDVRY 181


>gi|119478511|ref|ZP_01618473.1| Transcription elongation factor GreA [marine gamma proteobacterium
           HTCC2143]
 gi|119448492|gb|EAW29740.1| Transcription elongation factor GreA [marine gamma proteobacterium
           HTCC2143]
          Length = 153

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 67/153 (43%), Positives = 106/153 (69%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G   ++ EL   + E+RPRI++ I++AR +GDL ENAEY AA+E Q   EGR+ E+
Sbjct: 1   MTVAGEAAMRAELHRLKSEDRPRIVQDIADAREHGDLKENAEYHAAREQQGFCEGRIQEI 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  ++ + VID++T+    ++ FG TV++V   + ++  Y+IVG+ EA+V +G++S++SP
Sbjct: 61  EGKLSDSIVIDVTTIPSTGKVIFGTTVAIVNCETDEEVTYKIVGEDEANVSAGMISVTSP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IARALIGKE+GD+  V  P G+  YEI +V  +
Sbjct: 121 IARALIGKEVGDVAVVKTPKGDVEYEIDEVSHL 153


>gi|58584571|ref|YP_198144.1| transcription elongation factor, GreA [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58418887|gb|AAW70902.1| Transcription elongation factor, GreA [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 164

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 76/160 (47%), Positives = 112/160 (70%), Gaps = 4/160 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++ K P+T +GF+ IQ EL   ++E+ P II+AIS+AR  GDLSENAEY AA+E     E
Sbjct: 5   IIKKFPITREGFEHIQAELEKLKEEK-PSIIQAISDARDQGDLSENAEYHAARERLGFIE 63

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSL---VEKNSGDKKNYQIVGDQEADVQS 117
           GR+ ELEN ++ AE+I++  +SGD + FGATV+L    + +S  +  Y+IVG+ EADV  
Sbjct: 64  GRIMELENKLSHAEIIEVKNLSGDSVMFGATVTLSMLNDDDSEVEYIYKIVGEYEADVSK 123

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            L+S SSP+  ALIGK++G+ + V  P GEK Y+I+++ +
Sbjct: 124 QLISTSSPLGSALIGKKVGEYVEVTVPSGEKLYKIVKIEF 163


>gi|294675384|ref|YP_003576000.1| transcription elongation factor GreA family protein [Prevotella
           ruminicola 23]
 gi|294473225|gb|ADE82614.1| transcription elongation factor GreA family protein [Prevotella
           ruminicola 23]
          Length = 155

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 56/151 (37%), Positives = 89/151 (58%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+  EL+  +  ERP+   AI+EAR  GDLSEN+EY AAKE Q   E ++ +
Sbjct: 3   YMSQEGYDKLIAELQRLEGVERPKASAAIAEAREKGDLSENSEYDAAKEAQAHLEDKINQ 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I  A+VID S +S D +   + V +    +  K  Y IV + EA+++ G +SI +P
Sbjct: 63  LKMTIAEAKVIDTSRLSTDSVQILSKVEMTNLTNKAKMTYTIVSESEANLREGKISIQTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           IA+ L+  ++GD + V  P G     I ++ 
Sbjct: 123 IAQGLLNHKVGDEVEVKIPRGTIKLRIDKIT 153


>gi|33152720|ref|NP_874073.1| transcription elongation factor GreA [Haemophilus ducreyi 35000HP]
 gi|71152089|sp|Q7VL00|GREA_HAEDU RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|33148944|gb|AAP96462.1| transcription elongation factor [Haemophilus ducreyi 35000HP]
          Length = 158

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 68/157 (43%), Positives = 109/157 (69%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T +G + +++EL + +   RP+II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MKQIPMTVRGAELLREELEFLKNVRRPQIIDAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ E+E  +  A+VID     +  ++ FGATV LV  ++ ++  Y+IVGD EA+++ GL+
Sbjct: 61  RIQEIEGKLGNAQVIDVAKMTNNGKVIFGATVGLVNIDTDEEVTYRIVGDDEANIKEGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIAR L+GK + D +S+  PGG+  ++I+ V +
Sbjct: 121 SVNSPIARGLVGKSVDDSVSIITPGGKVEFDIISVEY 157


>gi|302327915|gb|ADL27116.1| transcription elongation factor GreA [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 155

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/153 (35%), Positives = 84/153 (54%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KI  T + +DK+ ++L   +  ERPR+++ + +ARA GDLSENAEY AAKE     + 
Sbjct: 1   MEKIMFTQEAYDKLVKDLENLKNVERPRVLQELVDARAQGDLSENAEYHAAKERLASIDN 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
                         +     + D I FGAT++     +  +  YQ+V  +EAD  +G +S
Sbjct: 61  IEMPKLQDQLARAQVIAFDANSDTIKFGATITAKNLKTKREIVYQLVSPEEADALNGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
             SPI  AL+GK+ GD + V  P G+  +EI+ 
Sbjct: 121 FKSPIGAALMGKKRGDTVEVVTPKGKNQFEIID 153


>gi|251796519|ref|YP_003011250.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2]
 gi|247544145|gb|ACT01164.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2]
          Length = 158

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 89/154 (57%), Gaps = 2/154 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           ++I +T +G  K++ EL   +  +R  +   +  A +YGDL EN+EY +AK+ Q   E R
Sbjct: 4   NEIILTPEGLKKLEDELEELKTVKRSELAHRLKVAISYGDLKENSEYHSAKDDQAFMETR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + +LE ++  A V +       ++  GA V L +    +K  Y++VG  EADV    +S 
Sbjct: 64  ITQLEKMLKTARVSNSKDT--TKVGVGAIVVLNDIEVAEKIEYRLVGPAEADVFENKISY 121

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +AL+GK +GD ISV+AP G   YE+L++ 
Sbjct: 122 ESPMGQALMGKSVGDTISVDAPIGVIKYELLEIK 155


>gi|331268357|ref|YP_004394849.1| transcription elongation factor GreA [Clostridium botulinum
           BKT015925]
 gi|329124907|gb|AEB74852.1| transcription elongation factor GreA [Clostridium botulinum
           BKT015925]
          Length = 151

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 58/150 (38%), Positives = 93/150 (62%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T++G  K++ EL + +  +R  I + I  A +YGDLSEN+EY  AK  Q   EGR+ ++
Sbjct: 1   MTAEGVKKLEDELEYLKTTKRREITEKIKVALSYGDLSENSEYDEAKNEQAFVEGRIVQI 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           EN++  A VID S +  D ++ GA V + + +  ++ ++ IVG  EAD     +S  SP+
Sbjct: 61  ENMLRNANVIDESEIPKDVVSVGAIVKVKDYDFDEEIDFHIVGSAEADPMENKISNESPV 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
             ALIGK++GDI++V  P G   +EIL++ 
Sbjct: 121 GSALIGKKVGDIVNVPVPDGISKFEILEIR 150


>gi|315644403|ref|ZP_07897543.1| transcription elongation factor GreA [Paenibacillus vortex V453]
 gi|315280280|gb|EFU43572.1| transcription elongation factor GreA [Paenibacillus vortex V453]
          Length = 158

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK + +T  G  K++ EL   +  +R  + + I  A  YGD+SEN+EY+ AK  Q   
Sbjct: 1   MSDKEVILTQDGLKKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A +I+   ++ D I  G TV + +   GD   Y IVG  E+D  +  
Sbjct: 61  EGRIITLEKMLRNARIINNDDINTDIIGVGNTVLVEDLEFGDTMEYTIVGSAESDPLNNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +A+IGK+ G ++ VN P G   Y+I+ + 
Sbjct: 121 ISNESPVGKAIIGKQKGSVVDVNVPAGVIQYKIVDIK 157


>gi|78357555|ref|YP_389004.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219960|gb|ABB39309.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 235

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 66/156 (42%), Positives = 106/156 (67%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP++ +GF+ ++++L   +Q ERP +I+AI EAR  GDLSENA Y AA+E Q + E 
Sbjct: 73  MSSIPISVEGFELVKRDLERLKQ-ERPAVIQAIKEAREEGDLSENAGYDAARERQGMLEA 131

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  +E+ + R  VID+ T+ G+R+ +GAT+ L +  +G+ + Y +VG  E D   G +S
Sbjct: 132 RIGNIESRMARFNVIDMRTLGGERVTYGATIELEDLETGEMRVYTLVGPDETDYVKGSIS 191

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SP+A+A++GKE GD + V+AP G+  YEI+ V +
Sbjct: 192 VLSPVAKAVLGKEEGDEVVVDAPRGKIHYEIVSVSF 227


>gi|187730872|ref|YP_001882083.1| transcription elongation factor GreB [Shigella boydii CDC 3083-94]
 gi|187427864|gb|ACD07138.1| transcription elongation factor GreB [Shigella boydii CDC 3083-94]
          Length = 158

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPAGEASWYVNSIEYV 156


>gi|311277660|ref|YP_003939891.1| transcription elongation factor GreB [Enterobacter cloacae SCF1]
 gi|308746855|gb|ADO46607.1| transcription elongation factor GreB [Enterobacter cloacae SCF1]
          Length = 157

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K+++EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYEKLKKELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   +   K  ++IVG  E   Q   +S
Sbjct: 61  RVRYLTKCLEHLKIVDYSPQQEGKVFFGAWVEIENDDGDIK-RFRIVGYDEIFGQKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+ +V  PGGE T+ +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLATVQTPGGEATWYVNDIEYV 156


>gi|191167876|ref|ZP_03029680.1| transcription elongation factor GreB [Escherichia coli B7A]
 gi|190902049|gb|EDV61794.1| transcription elongation factor GreB [Escherichia coli B7A]
          Length = 158

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPAGETSWYVNAIEYV 156


>gi|28209977|ref|NP_780921.1| transcription elongation factor GreA [Clostridium tetani E88]
 gi|28202412|gb|AAO34858.1| transcription elongation factor greA [Clostridium tetani E88]
          Length = 186

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 89/155 (57%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T +G  K+++EL + +  +R  I + I  A ++GDLSEN+EY  AK  Q   EG
Sbjct: 30  SKKYVMTYEGVKKLEEELEYLKTVKRKEITQKIKVALSFGDLSENSEYDEAKNEQAFVEG 89

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +LEN++  A ++D + M  D +  G+ V + +    D++ + IVG  EAD     +S
Sbjct: 90  RIIQLENMLKNATIVDENEMPADTVNVGSIVKVKDFEFNDEEEFIIVGSAEADPLENKIS 149

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+ +ALIGK+ G+ + V  P G   YEI+ V 
Sbjct: 150 NESPVGKALIGKKAGEKVEVIVPDGISKYEIISVR 184


>gi|229013597|ref|ZP_04170728.1| Transcription elongation factor greA [Bacillus mycoides DSM 2048]
 gi|229062075|ref|ZP_04199400.1| Transcription elongation factor greA [Bacillus cereus AH603]
 gi|229169123|ref|ZP_04296838.1| Transcription elongation factor greA [Bacillus cereus AH621]
 gi|228614351|gb|EEK71461.1| Transcription elongation factor greA [Bacillus cereus AH621]
 gi|228717227|gb|EEL68902.1| Transcription elongation factor greA [Bacillus cereus AH603]
 gi|228747656|gb|EEL97528.1| Transcription elongation factor greA [Bacillus mycoides DSM 2048]
          Length = 175

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++ E+   +   R  +++ I  AR++GDLSEN+EY AAK+ Q  
Sbjct: 18  MATEKTYPMTQEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAF 77

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN+I  A +I+ +      +  G TV   E   GD++ Y IVG  EAD   G
Sbjct: 78  VEGRITQLENMIRNAVIIEDNGEESTVVTLGKTVIFKELPGGDEEAYIIVGSAEADPFEG 137

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 138 RISNDSPIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 175


>gi|254522230|ref|ZP_05134285.1| transcriptional elongation factor [Stenotrophomonas sp. SKA14]
 gi|219719821|gb|EED38346.1| transcriptional elongation factor [Stenotrophomonas sp. SKA14]
          Length = 152

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 72/149 (48%), Positives = 109/149 (73%), Gaps = 1/149 (0%)

Query: 11  GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
           G  K++ EL   +  +RP++I AI+EAR +GDL ENAEY AA+E Q   EGR+ +LE  +
Sbjct: 3   GAQKLRDELDHLKSVKRPKVIAAIAEAREHGDLKENAEYHAAREEQGFIEGRIKQLEGEL 62

Query: 71  TRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
           + AE+ID+S   +G ++ FGA+V+L +  + ++K YQIVGD EAD++ GL++ISSP+ARA
Sbjct: 63  SHAEIIDVSKLNAGSKVVFGASVTLADVETDEEKKYQIVGDLEADIKLGLIAISSPVARA 122

Query: 130 LIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +IGK  GD I ++AP G++ YEI+ V ++
Sbjct: 123 MIGKLEGDSIVIDAPAGQREYEIVSVSYV 151


>gi|206561354|ref|YP_002232119.1| transcription elongation factor GreB [Burkholderia cenocepacia
           J2315]
 gi|198037396|emb|CAR53331.1| transcription elongation factor [Burkholderia cenocepacia J2315]
          Length = 187

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 74/154 (48%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL      ERP +++ +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F       E   G+     IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQENVDQVFFGATVDYETPDGEDHTVTIVGIDEVDLDRGCVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARALI  ++GD +++  P G +  +IL V +
Sbjct: 148 SPVARALIKAKIGDTVTLMTPAGPQPIDILDVRY 181


>gi|326803433|ref|YP_004321251.1| transcription elongation factor GreA [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651692|gb|AEA01875.1| transcription elongation factor GreA [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 159

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M ++  P+T +G ++++ EL   +  +RP +I  I  AR++GDLSEN+EY++AK  Q++ 
Sbjct: 1   MSEQTFPMTVEGKERLEAELEDLKLNKRPEVISRIKVARSFGDLSENSEYESAKNEQSIL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E ++A++EN+I  AE++D   +  D ++ G  V   E   G+++ Y+IVG  EAD   G 
Sbjct: 61  ESQIAKIENMIRYAEIVDPDALGKDTVSIGKRVKFQELPDGEEEEYEIVGKAEADPLGGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA ALIGK++GD + +  PG   +  IL V 
Sbjct: 121 ISNESPIANALIGKKVGDEVEIETPGEAFSVRILAVE 157


>gi|157372858|ref|YP_001480847.1| transcription elongation factor GreB [Serratia proteamaculans 568]
 gi|157324622|gb|ABV43719.1| transcription elongation factor GreB [Serratia proteamaculans 568]
          Length = 157

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+DK++QEL +  +E+RP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MRTPLITREGYDKLKQELDYLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + + +V+D S     ++ FGA V +  ++   K  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCLEQLKVVDHSPQQEGKVFFGAWVVVENEDGEIK-RFRIVGYDEIFGRRDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD  +VN P G+  + + ++ ++
Sbjct: 120 IDSPMARALLKKEVGDSATVNTPAGDALWYVNEIEYV 156


>gi|110807238|ref|YP_690758.1| transcription elongation factor GreB [Shigella flexneri 5 str.
           8401]
 gi|161485871|ref|NP_709179.2| transcription elongation factor GreB [Shigella flexneri 2a str.
           301]
 gi|161486379|ref|NP_839482.2| transcription elongation factor GreB [Shigella flexneri 2a str.
           2457T]
 gi|110616786|gb|ABF05453.1| Transcription elongation factor [Shigella flexneri 5 str. 8401]
 gi|281602756|gb|ADA75740.1| Transcription elongation factor and transcript cleavage factor
           [Shigella flexneri 2002017]
 gi|313647298|gb|EFS11750.1| transcription elongation factor GreB [Shigella flexneri 2a str.
           2457T]
 gi|332749495|gb|EGJ79912.1| transcription elongation factor GreB [Shigella flexneri K-671]
 gi|332750345|gb|EGJ80756.1| transcription elongation factor GreB [Shigella flexneri 4343-70]
 gi|332751378|gb|EGJ81781.1| transcription elongation factor GreB [Shigella flexneri 2747-71]
 gi|332763611|gb|EGJ93850.1| transcription elongation factor GreB [Shigella flexneri 2930-71]
 gi|332996406|gb|EGK16033.1| transcription elongation factor GreB [Shigella flexneri VA-6]
 gi|332996647|gb|EGK16272.1| transcription elongation factor GreB [Shigella flexneri K-272]
 gi|332997483|gb|EGK17099.1| transcription elongation factor GreB [Shigella flexneri K-218]
 gi|333012511|gb|EGK31892.1| transcription elongation factor GreB [Shigella flexneri K-304]
 gi|333013054|gb|EGK32430.1| transcription elongation factor GreB [Shigella flexneri K-227]
          Length = 158

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE  + +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPAGEANWYVNAIEYV 156


>gi|89110604|ref|AP_004384.1| transcription elongation factor [Escherichia coli str. K-12 substr.
           W3110]
 gi|90111587|ref|YP_026216.2| transcript cleavage factor [Escherichia coli str. K-12 substr.
           MG1655]
 gi|157162883|ref|YP_001460201.1| transcription elongation factor GreB [Escherichia coli HS]
 gi|170018358|ref|YP_001723312.1| transcription elongation factor GreB [Escherichia coli ATCC 8739]
 gi|170082923|ref|YP_001732243.1| transcription elongation factor [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188492838|ref|ZP_03000108.1| transcription elongation factor GreB [Escherichia coli 53638]
 gi|193068770|ref|ZP_03049730.1| transcription elongation factor GreB [Escherichia coli E110019]
 gi|194431145|ref|ZP_03063438.1| transcription elongation factor GreB [Shigella dysenteriae 1012]
 gi|194435634|ref|ZP_03067737.1| transcription elongation factor GreB [Escherichia coli 101-1]
 gi|209920862|ref|YP_002294946.1| transcription elongation factor GreB [Escherichia coli SE11]
 gi|218555955|ref|YP_002388868.1| transcription elongation factor GreB [Escherichia coli IAI1]
 gi|238902497|ref|YP_002928293.1| transcription elongation factor [Escherichia coli BW2952]
 gi|253771765|ref|YP_003034596.1| transcription elongation factor GreB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|256020750|ref|ZP_05434615.1| transcription elongation factor GreB [Shigella sp. D9]
 gi|256025866|ref|ZP_05439731.1| transcription elongation factor GreB [Escherichia sp. 4_1_40B]
 gi|301023124|ref|ZP_07186930.1| transcription elongation factor GreB [Escherichia coli MS 196-1]
 gi|312972330|ref|ZP_07786504.1| transcription elongation factor GreB [Escherichia coli 1827-70]
 gi|544419|sp|P30128|GREB_ECOLI RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|1763682|gb|AAB39763.1| GreB [Escherichia coli]
 gi|85676635|dbj|BAE77885.1| transcription elongation factor [Escherichia coli str. K12 substr.
           W3110]
 gi|87082261|gb|AAC76431.2| transcript cleavage factor [Escherichia coli str. K-12 substr.
           MG1655]
 gi|157068563|gb|ABV07818.1| transcription elongation factor GreB [Escherichia coli HS]
 gi|169753286|gb|ACA75985.1| transcription elongation factor GreB [Escherichia coli ATCC 8739]
 gi|169890758|gb|ACB04465.1| transcription elongation factor [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188488037|gb|EDU63140.1| transcription elongation factor GreB [Escherichia coli 53638]
 gi|192957846|gb|EDV88289.1| transcription elongation factor GreB [Escherichia coli E110019]
 gi|194420600|gb|EDX36676.1| transcription elongation factor GreB [Shigella dysenteriae 1012]
 gi|194425177|gb|EDX41161.1| transcription elongation factor GreB [Escherichia coli 101-1]
 gi|209914121|dbj|BAG79195.1| transcription elongation factor GreB [Escherichia coli SE11]
 gi|218362723|emb|CAR00349.1| transcription elongation factor [Escherichia coli IAI1]
 gi|238863678|gb|ACR65676.1| transcription elongation factor [Escherichia coli BW2952]
 gi|253322809|gb|ACT27411.1| transcription elongation factor GreB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260447575|gb|ACX37997.1| transcription elongation factor GreB [Escherichia coli DH1]
 gi|299880978|gb|EFI89189.1| transcription elongation factor GreB [Escherichia coli MS 196-1]
 gi|309703817|emb|CBJ03158.1| transcription elongation factor [Escherichia coli ETEC H10407]
 gi|310334707|gb|EFQ00912.1| transcription elongation factor GreB [Escherichia coli 1827-70]
 gi|315137982|dbj|BAJ45141.1| transcription elongation factor greB [Escherichia coli DH1]
 gi|315614674|gb|EFU95314.1| transcription elongation factor GreB [Escherichia coli 3431]
 gi|320181896|gb|EFW56802.1| Transcription elongation factor GreB [Shigella boydii ATCC 9905]
 gi|320199576|gb|EFW74166.1| Transcription elongation factor GreB [Escherichia coli EC4100B]
 gi|323934604|gb|EGB31004.1| transcription elongation protein GreB [Escherichia coli E1520]
 gi|323939374|gb|EGB35585.1| transcription elongation proteinGreB [Escherichia coli E482]
 gi|323959594|gb|EGB55246.1| transcription elongation proteinGreB [Escherichia coli H489]
 gi|323970004|gb|EGB65279.1| transcription elongation proteinGreB [Escherichia coli TA007]
 gi|324116399|gb|EGC10318.1| transcription elongation proteinGreB [Escherichia coli E1167]
 gi|332085554|gb|EGI90720.1| transcription elongation factor GreB [Shigella boydii 5216-82]
 gi|332085689|gb|EGI90853.1| transcription elongation factor GreB [Shigella dysenteriae 155-74]
 gi|332345358|gb|AEE58692.1| transcription elongation factor GreB [Escherichia coli UMNK88]
          Length = 158

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156


>gi|168180989|ref|ZP_02615653.1| transcription elongation factor GreA [Clostridium botulinum NCTC
           2916]
 gi|226950976|ref|YP_002806067.1| transcription elongation factor GreA [Clostridium botulinum A2 str.
           Kyoto]
 gi|254799555|sp|C1FNC6|GREA_CLOBJ RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|182668066|gb|EDT80045.1| transcription elongation factor GreA [Clostridium botulinum NCTC
           2916]
 gi|226841785|gb|ACO84451.1| transcription elongation factor GreA [Clostridium botulinum A2 str.
           Kyoto]
          Length = 160

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 2/157 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +G  K+++EL + +  +R  I + I  A ++GDLSEN+EY  AK  Q  
Sbjct: 1   MSEAKKYVMTYEGVKKLEEELEFLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN++  A ++D + +  D ++ G+ V + +    ++  Y IVG  EAD  + 
Sbjct: 61  VEGRIIQLENMLKNASIVDENEVPKDIVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNN 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+   LIGK++GDII V  P G   YEIL+V
Sbjct: 121 KISNESPVGHGLIGKKVGDIIEVTVPDGVSKYEILEV 157


>gi|262274892|ref|ZP_06052703.1| transcription elongation factor GreA [Grimontia hollisae CIP
           101886]
 gi|262221455|gb|EEY72769.1| transcription elongation factor GreA [Grimontia hollisae CIP
           101886]
          Length = 157

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 69/158 (43%), Positives = 109/158 (68%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK+P+T +G +++ ++   R  + RP I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MDKVPMTVRG-EQLLRDELDRLLKRRPLITQAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID     +  ++ FGATV+L++ ++ ++  YQIVGD EAD +  L+
Sbjct: 60  QIRDIEYKLSVAQVIDIAKMPNNGKVIFGATVTLIDCHTDEEVTYQIVGDDEADFKKNLI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGKE GD +++  PGG K +EI  V +I
Sbjct: 120 SVNSPIARGLIGKEEGDEVAITVPGGVKEFEIESVKYI 157


>gi|219849234|ref|YP_002463667.1| transcription elongation factor GreA [Chloroflexus aggregans DSM
           9485]
 gi|254799553|sp|B8G358|GREA_CHLAD RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|219543493|gb|ACL25231.1| transcription elongation factor GreA [Chloroflexus aggregans DSM
           9485]
          Length = 157

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T +G  +++ EL      ER +I + I+ A+  GD+SE+ EY+ AK+ Q L 
Sbjct: 1   MTEKPTYLTREGRARLEAELEHLMTVERKQIAERIAAAKELGDISESGEYEDAKKAQALL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+ EL+++++RAE+ID    S   +  G++V++  ++ G ++ + IVG  EA+ + G 
Sbjct: 61  EGRIRELKHLLSRAEIIDEDQASTGEVRIGSSVTVRFEDDGSEETWTIVGSAEANPRQGR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPI  AL+GK + + ++V+ P G     IL+V 
Sbjct: 121 ISNESPIGAALLGKRVRNKVTVHTPSGVMKLTILKVR 157


>gi|51894292|ref|YP_076983.1| transcription elongation factor [Symbiobacterium thermophilum IAM
           14863]
 gi|51857981|dbj|BAD42139.1| transcription elongation factor [Symbiobacterium thermophilum IAM
           14863]
          Length = 157

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + ++  G  +++QEL + +  +R  + + I +AR YGD+SEN+EY+ AK  Q   
Sbjct: 1   MAEKEVLLSLDGLKQLEQELLYLRTVKRMEVAERIKQAREYGDISENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A VID      + +  G+TV L +   GD+  Y IVG  EAD     
Sbjct: 61  EGRILVLEKMLRNARVIDEPVGQQEVVVLGSTVVLRDLEYGDEHTYTIVGTTEADPAHNR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ RA++G+ +G +++V+AP G   YEI+ + 
Sbjct: 121 ISNESPVGRAIMGQRVGTVVAVDAPDGVFKYEIVAIK 157


>gi|331007819|ref|ZP_08330923.1| Transcription elongation factor GreB [gamma proteobacterium
           IMCC1989]
 gi|330418373|gb|EGG92935.1| Transcription elongation factor GreB [gamma proteobacterium
           IMCC1989]
          Length = 168

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 84/153 (54%), Gaps = 1/153 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T++G   +  EL+   + ERP +   + EA   GD SEN +Y   K+     + R+  
Sbjct: 14  YITAEGAAHLTAELKQLWKVERPVVTDTVHEAAKNGDRSENGDYIYGKKRLREIDSRVRF 73

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +    ++D +  + + + FGA V+L++ +  + + YQIVG  E D+    +S+ SP
Sbjct: 74  LTKRLEELTIVDQAPANQNTVYFGAWVTLIDDD-DNTQRYQIVGPDEFDISQQKISMDSP 132

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IA+AL+ K+LGD + +  P G+  + I ++ +I
Sbjct: 133 IAKALLKKQLGDEVLIVTPNGDTLFYIEKIEYI 165


>gi|115350916|ref|YP_772755.1| transcription elongation factor GreB [Burkholderia ambifaria AMMD]
 gi|170698517|ref|ZP_02889588.1| transcription elongation factor GreB [Burkholderia ambifaria
           IOP40-10]
 gi|171315539|ref|ZP_02904775.1| transcription elongation factor GreB [Burkholderia ambifaria MEX-5]
 gi|172059929|ref|YP_001807581.1| transcription elongation factor GreB [Burkholderia ambifaria
           MC40-6]
 gi|115280904|gb|ABI86421.1| transcription elongation factor GreB [Burkholderia ambifaria AMMD]
 gi|170136601|gb|EDT04858.1| transcription elongation factor GreB [Burkholderia ambifaria
           IOP40-10]
 gi|171099376|gb|EDT44114.1| transcription elongation factor GreB [Burkholderia ambifaria MEX-5]
 gi|171992446|gb|ACB63365.1| transcription elongation factor GreB [Burkholderia ambifaria
           MC40-6]
          Length = 187

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 73/154 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL      ERP +++ +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G+     IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQENVDQVFFGATVDYATPDGEDHTITIVGIDEVDLDHGCVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARALI  ++GD +++  P G +  ++L V +
Sbjct: 148 SPVARALIKAKIGDTVTLMTPAGPQPIDVLDVRY 181


>gi|313886047|ref|ZP_07819785.1| transcription elongation factor GreA [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332299382|ref|YP_004441303.1| transcription elongation factor GreA [Porphyromonas asaccharolytica
           DSM 20707]
 gi|312924577|gb|EFR35348.1| transcription elongation factor GreA [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332176445|gb|AEE12135.1| transcription elongation factor GreA [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 156

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 96/155 (61%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+D +   ++  + EERP++ + I+EAR  GDLSENAEY AAKE Q   E 
Sbjct: 1   MGYYYMTQEGYDALNNTIKQLEAEERPKVTQQIAEARDKGDLSENAEYDAAKEAQAHLED 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++A L+  +  A V++ S +  D +     V L+ K  G++K+Y IV D EA+ +   +S
Sbjct: 61  KIAMLKAQLGNARVLEPSQIKTDEVQILNHVRLLNKKKGEEKSYYIVSDAEANFKENKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +++PIA+ L+GK++GDI  +  P G   +EIL++ 
Sbjct: 121 VNTPIAKGLLGKKVGDIAEIQVPAGTLVFEILEIT 155


>gi|108805000|ref|YP_644937.1| transcription elongation factor GreA [Rubrobacter xylanophilus DSM
           9941]
 gi|108766243|gb|ABG05125.1| transcription elongation factor GreA [Rubrobacter xylanophilus DSM
           9941]
          Length = 154

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 92/151 (60%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +GF K+Q+EL++  +  R  + + I +AR +GD+SEN+EY  AK  Q L E R++EL
Sbjct: 1   MTPEGFAKLQEELKYLTEVRRKEVAERIRQAREFGDISENSEYDDAKNEQGLLERRISEL 60

Query: 67  ENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           +  +  A+++D  S+     +  G  V+L     G ++ +QIVG  EAD  SG +S +SP
Sbjct: 61  QRRLRNAKIVDPASSAEEGAVDLGTRVTLRVVGDGRERTFQIVGANEADPASGKLSHASP 120

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           + +AL+ + +G+ + V+ P G   YEI+ V 
Sbjct: 121 VGKALLRRRVGEKVRVSTPRGATEYEIVSVE 151


>gi|241762247|ref|ZP_04760329.1| transcription elongation factor GreA [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753827|ref|YP_003226720.1| transcription elongation factor GreA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283856510|ref|YP_163350.2| transcription elongation factor GreA [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|7387716|sp|O50237|GREA_ZYMMO RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|3820585|gb|AAC70357.1| transcription elongation factor [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241373294|gb|EER62913.1| transcription elongation factor GreA [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258553190|gb|ACV76136.1| transcription elongation factor GreA [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|283775514|gb|AAV90239.2| transcription elongation factor GreA [Zymomonas mobilis subsp.
           mobilis ZM4]
          Length = 158

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 72/156 (46%), Positives = 104/156 (66%), Gaps = 2/156 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KIP+  +G   +  EL      ERP+II AI EARA+GDLSENAEY AAKE Q   E  
Sbjct: 5   EKIPMLIEGQQMLMDELARL-HAERPKIIDAIEEARAHGDLSENAEYHAAKERQGQVEAM 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ++E  ++RA VID  T+SGD++ FGATV L++++      YQIVG  EA+ + G +S 
Sbjct: 64  IGDIEGKLSRALVIDPKTLSGDKVIFGATVHLLDEDDKPV-KYQIVGQTEANAKGGRISY 122

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SP+ RALIG+++ D I V+ P G++ Y I ++ +I
Sbjct: 123 NSPLGRALIGRKVDDEIEVSVPSGDRYYLISKIEFI 158


>gi|88657640|ref|YP_506961.1| transcription elongation factor GreA [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88599097|gb|ABD44566.1| transcription elongation factor GreA [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 162

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 76/163 (46%), Positives = 112/163 (68%), Gaps = 6/163 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  + P+T  GF K++ EL   +  ERP+IIK+ISEAR  GDLSENAEY AA+E Q L E
Sbjct: 1   MNARFPITKNGFAKLELELESLKH-ERPKIIKSISEARELGDLSENAEYHAARERQGLVE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKN----SGDKKNYQIVGDQEADVQ 116
            ++ ELE+  +RAEVID+S +SGD + FGATV++   +    + D+  YQIVG+ EAD+ 
Sbjct: 60  SKIMELESKKSRAEVIDVSNLSGDTVMFGATVTMSIYDEQTGNTDEVVYQIVGEYEADIS 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
             ++SI SP+  +L+GK+ GD++ V  P G+   Y+I+++ +I
Sbjct: 120 KQMISIKSPLVVSLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 162


>gi|153806042|ref|ZP_01958710.1| hypothetical protein BACCAC_00293 [Bacteroides caccae ATCC 43185]
 gi|149130719|gb|EDM21925.1| hypothetical protein BACCAC_00293 [Bacteroides caccae ATCC 43185]
          Length = 176

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 59/150 (39%), Positives = 95/150 (63%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ K+  EL+  +  ERP+I  AI+EAR  GDLSENAEY AAKE Q L E R+ +
Sbjct: 25  YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGLLEMRINK 84

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ +I  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 85  LKTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 144

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+GK++GD+  +  P G+   E++ +
Sbjct: 145 IAQGLLGKKIGDVAEITVPQGKIALEVVNI 174


>gi|187478047|ref|YP_786071.1| transcription elongation factor GreB [Bordetella avium 197N]
 gi|115422633|emb|CAJ49158.1| transcription elongation factor [Bordetella avium 197N]
          Length = 187

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 80/154 (51%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T +G+ +++ EL      ERP +++ +S A + GD SEN +Y   K+     + RM
Sbjct: 28  RNYMTPEGYARLRDELAHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRM 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F     +    SG+ +   IVG  EA+  +G +S  
Sbjct: 88  RFLTKRLDIAEVVDASLQPNRDQIFFGATVVYAGKSGEAQRVSIVGVDEAEPLAGKISWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARALI    GD +++  PGG +  +IL+V +
Sbjct: 148 SPVARALIKAREGDTVTLRTPGGVEALDILEVHY 181


>gi|82545761|ref|YP_409708.1| transcription elongation factor GreB [Shigella boydii Sb227]
 gi|82778777|ref|YP_405126.1| transcription elongation factor GreB [Shigella dysenteriae Sd197]
 gi|110643639|ref|YP_671369.1| transcription elongation factor GreB [Escherichia coli 536]
 gi|117625673|ref|YP_858996.1| transcription elongation factor GreB [Escherichia coli APEC O1]
 gi|157155011|ref|YP_001464863.1| transcription elongation factor GreB [Escherichia coli E24377A]
 gi|161367507|ref|NP_289946.2| transcription elongation factor GreB [Escherichia coli O157:H7
           EDL933]
 gi|161486092|ref|NP_756047.2| transcription elongation factor GreB [Escherichia coli CFT073]
 gi|162139752|ref|NP_312275.2| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           Sakai]
 gi|168747116|ref|ZP_02772138.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753159|ref|ZP_02778166.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168759431|ref|ZP_02784438.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4501]
 gi|168765754|ref|ZP_02790761.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168772702|ref|ZP_02797709.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779490|ref|ZP_02804497.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785211|ref|ZP_02810218.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC869]
 gi|168797177|ref|ZP_02822184.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC508]
 gi|170680405|ref|YP_001745654.1| transcription elongation factor GreB [Escherichia coli SMS-3-5]
 gi|191171514|ref|ZP_03033062.1| transcription elongation factor GreB [Escherichia coli F11]
 gi|193061828|ref|ZP_03042925.1| transcription elongation factor GreB [Escherichia coli E22]
 gi|194426931|ref|ZP_03059483.1| transcription elongation factor GreB [Escherichia coli B171]
 gi|195934895|ref|ZP_03080277.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806096|ref|ZP_03248433.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813018|ref|ZP_03254347.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821026|ref|ZP_03261346.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400461|ref|YP_002272841.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4115]
 gi|215488687|ref|YP_002331118.1| transcription elongation factor GreB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217325218|ref|ZP_03441302.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218550664|ref|YP_002384455.1| transcription elongation factor GreB [Escherichia fergusonii ATCC
           35469]
 gi|218560464|ref|YP_002393377.1| transcription elongation factor GreB [Escherichia coli S88]
 gi|218691683|ref|YP_002399895.1| transcription elongation factor GreB [Escherichia coli ED1a]
 gi|218697089|ref|YP_002404756.1| transcription elongation factor GreB [Escherichia coli 55989]
 gi|218702151|ref|YP_002409780.1| transcription elongation factor GreB [Escherichia coli IAI39]
 gi|218706997|ref|YP_002414516.1| transcription elongation factor GreB [Escherichia coli UMN026]
 gi|254795321|ref|YP_003080158.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           TW14359]
 gi|260846190|ref|YP_003223968.1| transcription elongation factor GreB [Escherichia coli O103:H2 str.
           12009]
 gi|260857513|ref|YP_003231404.1| transcription elongation factor GreB [Escherichia coli O26:H11 str.
           11368]
 gi|260870132|ref|YP_003236534.1| transcription elongation factor GreB [Escherichia coli O111:H- str.
           11128]
 gi|261224687|ref|ZP_05938968.1| transcription elongation factor [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254418|ref|ZP_05946951.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284742|ref|YP_003501560.1| Transcription elongation factor greB [Escherichia coli O55:H7 str.
           CB9615]
 gi|293406984|ref|ZP_06650908.1| greB [Escherichia coli FVEC1412]
 gi|293412823|ref|ZP_06655491.1| transcription elongation factor GreB [Escherichia coli B354]
 gi|293416808|ref|ZP_06659445.1| transcription elongation factor GreB [Escherichia coli B185]
 gi|293453712|ref|ZP_06664131.1| transcription elongation factor GreB [Escherichia coli B088]
 gi|298382726|ref|ZP_06992321.1| transcription elongation factor GreB [Escherichia coli FVEC1302]
 gi|306816256|ref|ZP_07450394.1| transcription elongation factor GreB [Escherichia coli NC101]
 gi|307311930|ref|ZP_07591568.1| GreA/GreB family elongation factor [Escherichia coli W]
 gi|309785849|ref|ZP_07680480.1| transcription elongation factor GreB [Shigella dysenteriae 1617]
 gi|331659695|ref|ZP_08360633.1| transcription elongation factor GreB [Escherichia coli TA206]
 gi|331665011|ref|ZP_08365912.1| transcription elongation factor GreB [Escherichia coli TA143]
 gi|331670228|ref|ZP_08371067.1| transcription elongation factor GreB [Escherichia coli TA271]
 gi|331685046|ref|ZP_08385632.1| transcription elongation factor GreB [Escherichia coli H299]
 gi|54037215|sp|P64274|GREB_ECO57 RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|54041323|sp|P64273|GREB_ECOL6 RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|166007061|pdb|2P4V|A Chain A, Crystal Structure Of The Transcript Cleavage Factor, Greb
           At 2.6a Resolution
 gi|166007062|pdb|2P4V|B Chain B, Crystal Structure Of The Transcript Cleavage Factor, Greb
           At 2.6a Resolution
 gi|166007063|pdb|2P4V|C Chain C, Crystal Structure Of The Transcript Cleavage Factor, Greb
           At 2.6a Resolution
 gi|166007064|pdb|2P4V|D Chain D, Crystal Structure Of The Transcript Cleavage Factor, Greb
           At 2.6a Resolution
 gi|166007065|pdb|2P4V|E Chain E, Crystal Structure Of The Transcript Cleavage Factor, Greb
           At 2.6a Resolution
 gi|166007066|pdb|2P4V|F Chain F, Crystal Structure Of The Transcript Cleavage Factor, Greb
           At 2.6a Resolution
 gi|81242925|gb|ABB63635.1| transcription elongation factor [Shigella dysenteriae Sd197]
 gi|81247172|gb|ABB67880.1| Transcription elongation factor [Shigella boydii Sb227]
 gi|110345231|gb|ABG71468.1| transcription elongation factor GreB [Escherichia coli 536]
 gi|115514797|gb|ABJ02872.1| transcription elongation factor GreB [Escherichia coli APEC O1]
 gi|157077041|gb|ABV16749.1| transcription elongation factor GreB [Escherichia coli E24377A]
 gi|170518123|gb|ACB16301.1| transcription elongation factor GreB [Escherichia coli SMS-3-5]
 gi|187771428|gb|EDU35272.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188018359|gb|EDU56481.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4113]
 gi|189002402|gb|EDU71388.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358929|gb|EDU77348.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364381|gb|EDU82800.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369538|gb|EDU87954.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374281|gb|EDU92697.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC869]
 gi|189380006|gb|EDU98422.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC508]
 gi|190908141|gb|EDV67732.1| transcription elongation factor GreB [Escherichia coli F11]
 gi|192932618|gb|EDV85215.1| transcription elongation factor GreB [Escherichia coli E22]
 gi|194414892|gb|EDX31162.1| transcription elongation factor GreB [Escherichia coli B171]
 gi|208725897|gb|EDZ75498.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734295|gb|EDZ82982.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741149|gb|EDZ88831.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161861|gb|ACI39294.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4115]
 gi|215266759|emb|CAS11199.1| transcription elongation factor [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217321439|gb|EEC29863.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           TW14588]
 gi|218353821|emb|CAV00173.1| transcription elongation factor [Escherichia coli 55989]
 gi|218358205|emb|CAQ90852.1| transcription elongation factor [Escherichia fergusonii ATCC 35469]
 gi|218367233|emb|CAR05007.1| transcription elongation factor [Escherichia coli S88]
 gi|218372137|emb|CAR19999.1| transcription elongation factor [Escherichia coli IAI39]
 gi|218429247|emb|CAR10203.2| transcription elongation factor [Escherichia coli ED1a]
 gi|218434094|emb|CAR15011.1| transcription elongation factor [Escherichia coli UMN026]
 gi|222035108|emb|CAP77853.1| Transcription elongation factor greB [Escherichia coli LF82]
 gi|254594721|gb|ACT74082.1| transcription elongation factor [Escherichia coli O157:H7 str.
           TW14359]
 gi|257756162|dbj|BAI27664.1| transcription elongation factor GreB [Escherichia coli O26:H11 str.
           11368]
 gi|257761337|dbj|BAI32834.1| transcription elongation factor GreB [Escherichia coli O103:H2 str.
           12009]
 gi|257766488|dbj|BAI37983.1| transcription elongation factor GreB [Escherichia coli O111:H- str.
           11128]
 gi|281180438|dbj|BAI56768.1| transcription elongation factor GreB [Escherichia coli SE15]
 gi|284923398|emb|CBG36492.1| transcription elongation factor [Escherichia coli 042]
 gi|290764615|gb|ADD58576.1| Transcription elongation factor greB [Escherichia coli O55:H7 str.
           CB9615]
 gi|291321838|gb|EFE61269.1| transcription elongation factor GreB [Escherichia coli B088]
 gi|291425795|gb|EFE98829.1| greB [Escherichia coli FVEC1412]
 gi|291431384|gb|EFF04369.1| transcription elongation factor GreB [Escherichia coli B185]
 gi|291468470|gb|EFF10963.1| transcription elongation factor GreB [Escherichia coli B354]
 gi|294493288|gb|ADE92044.1| transcription elongation factor GreB [Escherichia coli IHE3034]
 gi|298276562|gb|EFI18080.1| transcription elongation factor GreB [Escherichia coli FVEC1302]
 gi|305850652|gb|EFM51109.1| transcription elongation factor GreB [Escherichia coli NC101]
 gi|306908074|gb|EFN38574.1| GreA/GreB family elongation factor [Escherichia coli W]
 gi|307555492|gb|ADN48267.1| transcription elongation factor and transcript cleavage
           [Escherichia coli ABU 83972]
 gi|307628467|gb|ADN72771.1| transcription elongation factor GreB [Escherichia coli UM146]
 gi|308926969|gb|EFP72445.1| transcription elongation factor GreB [Shigella dysenteriae 1617]
 gi|312947954|gb|ADR28781.1| transcription elongation factor GreB [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315062685|gb|ADT77012.1| transcription elongation factor [Escherichia coli W]
 gi|320175773|gb|EFW50859.1| Transcription elongation factor GreB [Shigella dysenteriae CDC
           74-1112]
 gi|320186724|gb|EFW61447.1| Transcription elongation factor GreB [Shigella flexneri CDC 796-83]
 gi|320191583|gb|EFW66233.1| Transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC1212]
 gi|320197364|gb|EFW71979.1| Transcription elongation factor GreB [Escherichia coli WV_060327]
 gi|320639688|gb|EFX09282.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           G5101]
 gi|320645186|gb|EFX14202.1| transcription elongation factor GreB [Escherichia coli O157:H- str.
           493-89]
 gi|320650497|gb|EFX18963.1| transcription elongation factor GreB [Escherichia coli O157:H- str.
           H 2687]
 gi|320655689|gb|EFX23612.1| transcription elongation factor GreB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661473|gb|EFX28888.1| transcription elongation factor GreB [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320666496|gb|EFX33479.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323154239|gb|EFZ40442.1| transcription elongation factor GreB [Escherichia coli EPECa14]
 gi|323162791|gb|EFZ48628.1| transcription elongation factor GreB [Escherichia coli E128010]
 gi|323174039|gb|EFZ59667.1| transcription elongation factor GreB [Escherichia coli LT-68]
 gi|323179069|gb|EFZ64643.1| transcription elongation factor GreB [Escherichia coli 1180]
 gi|323182866|gb|EFZ68267.1| transcription elongation factor GreB [Escherichia coli 1357]
 gi|323189005|gb|EFZ74289.1| transcription elongation factor GreB [Escherichia coli RN587/1]
 gi|323376727|gb|ADX48995.1| transcription elongation factor GreB [Escherichia coli KO11]
 gi|323944372|gb|EGB40447.1| transcription elongation protein GreB [Escherichia coli H120]
 gi|323950063|gb|EGB45946.1| transcription elongation proteinGreB [Escherichia coli H252]
 gi|323954657|gb|EGB50439.1| transcription elongation proteinGreB [Escherichia coli H263]
 gi|323966219|gb|EGB61655.1| transcription elongation proteinGreB [Escherichia coli M863]
 gi|323974790|gb|EGB69902.1| transcription elongation proteinGreB [Escherichia coli TW10509]
 gi|324111718|gb|EGC05698.1| transcription elongation proteinGreB [Escherichia fergusonii B253]
 gi|326337631|gb|EGD61466.1| Transcription elongation factor GreB [Escherichia coli O157:H7 str.
           1044]
 gi|326344618|gb|EGD68367.1| Transcription elongation factor GreB [Escherichia coli O157:H7 str.
           1125]
 gi|327251041|gb|EGE62734.1| transcription elongation factor GreB [Escherichia coli STEC_7v]
 gi|330909439|gb|EGH37953.1| transcription elongation factor GreB [Escherichia coli AA86]
 gi|331052910|gb|EGI24943.1| transcription elongation factor GreB [Escherichia coli TA206]
 gi|331057521|gb|EGI29507.1| transcription elongation factor GreB [Escherichia coli TA143]
 gi|331062290|gb|EGI34210.1| transcription elongation factor GreB [Escherichia coli TA271]
 gi|331077417|gb|EGI48629.1| transcription elongation factor GreB [Escherichia coli H299]
 gi|332090241|gb|EGI95339.1| transcription elongation factor GreB [Shigella boydii 3594-74]
          Length = 158

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156


>gi|254520541|ref|ZP_05132597.1| transcription elongation factor GreA [Clostridium sp. 7_2_43FAA]
 gi|226914290|gb|EEH99491.1| transcription elongation factor GreA [Clostridium sp. 7_2_43FAA]
          Length = 160

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 91/158 (57%), Gaps = 2/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +G  K++ EL + +  +R  I + I  A  YGDLSEN+EY  AK  Q  
Sbjct: 1   MSETKKFVMTYEGVKKLEDELEFLKSVKRKEITEKIKVALGYGDLSENSEYDEAKNEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN++  A V+D S +  D+++ G  V + +    ++  Y IVG  EAD    
Sbjct: 61  TEGRIIQLENMLKNAVVVDGSEIPTDKVSVGTKVKVKDYEFDEEVEYSIVGSAEADPMEF 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+  AL+GK++G+I+ V  PGG   +EIL + 
Sbjct: 121 KISNESPVGAALLGKKVGEIVEVLVPGGINKFEILGIR 158


>gi|153938788|ref|YP_001392874.1| transcription elongation factor GreA [Clostridium botulinum F str.
           Langeland]
 gi|168183600|ref|ZP_02618264.1| transcription elongation factor GreA [Clostridium botulinum Bf]
 gi|170756932|ref|YP_001783160.1| transcription elongation factor GreA [Clostridium botulinum B1 str.
           Okra]
 gi|170758438|ref|YP_001788860.1| transcription elongation factor GreA [Clostridium botulinum A3 str.
           Loch Maree]
 gi|237796981|ref|YP_002864533.1| transcription elongation factor GreA [Clostridium botulinum Ba4
           str. 657]
 gi|229485765|sp|B1IGJ3|GREA_CLOBK RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|238686691|sp|A7GJB4|GREA_CLOBL RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|238688748|sp|B1KTC2|GREA_CLOBM RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|259647638|sp|C3KVU0|GREA_CLOB6 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|152934684|gb|ABS40182.1| transcription elongation factor GreA [Clostridium botulinum F str.
           Langeland]
 gi|169122144|gb|ACA45980.1| transcription elongation factor GreA [Clostridium botulinum B1 str.
           Okra]
 gi|169405427|gb|ACA53838.1| transcription elongation factor GreA [Clostridium botulinum A3 str.
           Loch Maree]
 gi|182673170|gb|EDT85131.1| transcription elongation factor GreA [Clostridium botulinum Bf]
 gi|229263650|gb|ACQ54683.1| transcription elongation factor GreA [Clostridium botulinum Ba4
           str. 657]
 gi|295320851|gb|ADG01229.1| transcription elongation factor GreA [Clostridium botulinum F str.
           230613]
          Length = 160

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 2/157 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +G  K+++EL + +  +R  I + I  A ++GDLSEN+EY  AK  Q  
Sbjct: 1   MSEAKKYVMTYEGVKKLEEELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN++  A ++D + +  D ++ G+ V + +    ++  Y IVG  EAD  + 
Sbjct: 61  VEGRIIQLENMLKNASIVDENEVPKDIVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNN 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+   LIGK++GDII V  P G   YEIL+V
Sbjct: 121 KISNESPVGHGLIGKKVGDIIEVTVPDGVSKYEILEV 157


>gi|300857282|ref|YP_003782266.1| putative transcription elongation factor [Clostridium ljungdahlii
           DSM 13528]
 gi|300437397|gb|ADK17164.1| predicted transcription elongation factor [Clostridium ljungdahlii
           DSM 13528]
          Length = 151

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 88/150 (58%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  K++ EL + +  +R  I++ I  A ++GDLSEN+EY +AK  Q   EGR+ +L
Sbjct: 1   MTYEGITKLEDELEYLKTAKRREIMEKIKVALSFGDLSENSEYDSAKNEQAFVEGRIVQL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           EN++  A ++D   +    +  G+ V + + +  ++  Y IVG  EAD  +  +S  SP+
Sbjct: 61  ENMLKNATIVDEEEIPPGVVGIGSIVKVRDYDFNEEVEYLIVGSAEADPINNKISNESPV 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            + L+GK+ GDI+ V  P G   YEIL + 
Sbjct: 121 GKGLVGKKAGDIVEVQVPDGVSKYEILSIR 150


>gi|160932785|ref|ZP_02080174.1| hypothetical protein CLOLEP_01626 [Clostridium leptum DSM 753]
 gi|156867859|gb|EDO61231.1| hypothetical protein CLOLEP_01626 [Clostridium leptum DSM 753]
          Length = 158

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 90/154 (58%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             ++ +T +G   ++QEL + + E R  I + I  A ++GDLSEN+EY  AK  Q + E 
Sbjct: 3   AKQVLLTDEGLHNLEQELEFLKTERRKEIAEKIKVALSFGDLSENSEYDEAKNDQAMVEA 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+A++E+++   ++ID   ++ + I  G+ V + +    +   YQIVG  EAD  +G +S
Sbjct: 63  RIADIESMLKNVKIIDQDELTTELIHIGSKVQVKDVEFDEVCTYQIVGSSEADPSNGRIS 122

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+ + L+G ++G+ + +  P G   YEIL +
Sbjct: 123 DESPVGKGLLGHKVGETVEIETPAGVMQYEILGI 156


>gi|253572564|ref|ZP_04849966.1| transcription elongation factor greA [Bacteroides sp. 1_1_6]
 gi|298387790|ref|ZP_06997340.1| transcription elongation factor GreA [Bacteroides sp. 1_1_14]
 gi|251837979|gb|EES66068.1| transcription elongation factor greA [Bacteroides sp. 1_1_6]
 gi|298259395|gb|EFI02269.1| transcription elongation factor GreA [Bacteroides sp. 1_1_14]
          Length = 173

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 59/150 (39%), Positives = 95/150 (63%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ K+  EL+  +  ERP+I  AI+EAR  GDLSENAEY AAKE Q + E R+ +
Sbjct: 22  YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 81

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ +I  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 82  LKTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 141

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+GK++GDI  +  P G+   E++ +
Sbjct: 142 IAQGLLGKKVGDIAEITVPQGKIALEVVNI 171


>gi|107022081|ref|YP_620408.1| transcription elongation factor GreB [Burkholderia cenocepacia AU
           1054]
 gi|116689025|ref|YP_834648.1| transcription elongation factor GreB [Burkholderia cenocepacia
           HI2424]
 gi|170732314|ref|YP_001764261.1| transcription elongation factor GreB [Burkholderia cenocepacia
           MC0-3]
 gi|254246039|ref|ZP_04939360.1| Transcription elongation factor [Burkholderia cenocepacia PC184]
 gi|105892270|gb|ABF75435.1| transcription elongation factor GreB [Burkholderia cenocepacia AU
           1054]
 gi|116647114|gb|ABK07755.1| transcription elongation factor GreB [Burkholderia cenocepacia
           HI2424]
 gi|124870815|gb|EAY62531.1| Transcription elongation factor [Burkholderia cenocepacia PC184]
 gi|169815556|gb|ACA90139.1| transcription elongation factor GreB [Burkholderia cenocepacia
           MC0-3]
          Length = 187

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 74/154 (48%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL      ERP +++ +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F       E   G+     IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQENVDQVFFGATVDYETPDGEDHTVTIVGIDEVDLDRGCVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARALI  ++GD +++  P G +  +IL V +
Sbjct: 148 SPVARALIKAKIGDTVTLMTPAGPQPIDILDVRY 181


>gi|332982218|ref|YP_004463659.1| transcription elongation factor GreA [Mahella australiensis 50-1
           BON]
 gi|332699896|gb|AEE96837.1| transcription elongation factor GreA [Mahella australiensis 50-1
           BON]
          Length = 158

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 94/157 (59%), Gaps = 1/157 (0%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M++K   +T +G +K+++EL + +  +R  I   I +A A+GDLSENAEY  AK  Q   
Sbjct: 1   MINKETLLTVEGIEKLEKELEYLKTVKRREIAAKIKQALAFGDLSENAEYDEAKNEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LEN++  A+VID   ++ D++  G+TV L +   GD + Y IVG  EAD     
Sbjct: 61  EGRIVTLENMLRNAKVIDADEITTDKVTIGSTVVLRDIEMGDDEEYVIVGSAEADPFKHK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +AL+GK  GDI+ +  P G   Y I+ + 
Sbjct: 121 ISNESPVGKALLGKSKGDIVEITVPDGIIRYSIVDIK 157


>gi|68171284|ref|ZP_00544685.1| Prokaryotic transcription elongation factor GreA [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|67999299|gb|EAM85947.1| Prokaryotic transcription elongation factor GreA [Ehrlichia
           chaffeensis str. Sapulpa]
          Length = 166

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/163 (46%), Positives = 112/163 (68%), Gaps = 6/163 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  + P+T  GF K++ EL   +  ERP+IIK+ISEAR  GDLSENAEY AA+E Q L E
Sbjct: 5   MNARFPITKNGFAKLELELESLKH-ERPKIIKSISEARELGDLSENAEYHAARERQGLVE 63

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKN----SGDKKNYQIVGDQEADVQ 116
            ++ ELE+  +RAEVID+S +SGD + FGATV++   +    + D+  YQIVG+ EAD+ 
Sbjct: 64  SKIMELESKKSRAEVIDVSNLSGDTVMFGATVTMSIYDEQTGNTDEVVYQIVGEYEADIS 123

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
             ++SI SP+  +L+GK+ GD++ V  P G+   Y+I+++ +I
Sbjct: 124 KQMISIKSPLVVSLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 166


>gi|212550757|ref|YP_002309074.1| transcription elongation factor GreA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212548995|dbj|BAG83663.1| transcription elongation factor GreA [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 156

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 97/154 (62%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G+DK+ +E+ + + EERP IIK I+EAR  GDLSEN EY AA+E Q++ E 
Sbjct: 1   MAINYMTKGGYDKLLEEIVYLESEERPSIIKQIAEAREKGDLSENVEYNAAREAQSILEL 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++ +L++++    +ID S +  + I     V+L    +G    Y +V + E D+++G +S
Sbjct: 61  KITQLKSLVANTRLIDESHIQTNSIQILNKVTLRNIKNGQTTVYTLVSEAETDLKAGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           I++PI++ LIGK++G+I  +  P G   +EIL +
Sbjct: 121 INTPISKGLIGKKVGEIAEIKTPSGIIYFEILSI 154


>gi|121603719|ref|YP_981048.1| transcription elongation factor GreB [Polaromonas naphthalenivorans
           CJ2]
 gi|120592688|gb|ABM36127.1| transcription elongation factor GreB [Polaromonas naphthalenivorans
           CJ2]
          Length = 183

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 81/155 (52%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+++++ EL      ERP+++  +  A + GD SEN +Y   K+     + R+
Sbjct: 27  KNYITPQGYNRLRVELLDLIDSERPKVVDIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86

Query: 64  AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AE+ +       D++ FGATV+  +     ++   I+G  EA    G +S 
Sbjct: 87  RFLTKRLEIAEISNPCVHHGNDQVFFGATVTYGDDEGL-ERTVTILGVDEAISAMGQISW 145

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+A AL+   +GD +++  P G +  E+L+V +
Sbjct: 146 ISPVASALLKARVGDEVTLVTPQGTQLLEVLKVDY 180


>gi|229822854|ref|ZP_04448924.1| hypothetical protein GCWU000282_00143 [Catonella morbi ATCC 51271]
 gi|229787667|gb|EEP23781.1| hypothetical protein GCWU000282_00143 [Catonella morbi ATCC 51271]
          Length = 159

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 100/157 (63%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K+  +T +G  K++ EL   +  +R  II+ I  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 1   MEEKVYPMTLEGKAKLEAELEDLKVNKRKEIIERIKIARSYGDLSENSEYDAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR++ +E +I  A++ID   ++ D +  G TVS +E    D+++Y IVG  EAD     
Sbjct: 61  EGRISVIEKMIRFAQIIDDRDVADDVVTLGRTVSFIELPGSDEESYTIVGSAEADPLEAK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+A+IGK+LGD+++V  PGG    +I ++ 
Sbjct: 121 ISNDSPIAKAIIGKKLGDVVTVETPGGSFDLKITKIE 157


>gi|156936432|ref|YP_001440348.1| transcription elongation factor GreB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|260599707|ref|YP_003212278.1| transcription elongation factor GreB [Cronobacter turicensis z3032]
 gi|156534686|gb|ABU79512.1| hypothetical protein ESA_04333 [Cronobacter sakazakii ATCC BAA-894]
 gi|260218884|emb|CBA34239.1| Transcription elongation factor greB [Cronobacter turicensis z3032]
          Length = 157

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K+++EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYEKLKKELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   +   K  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEVENDDGDVK-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE GD+ +V  PGGE T+ +  + ++
Sbjct: 120 IDSPMARALLKKEEGDVATVQTPGGEATWYVNAIEYV 156


>gi|125975378|ref|YP_001039288.1| transcription elongation factor GreA [Clostridium thermocellum ATCC
           27405]
 gi|256005475|ref|ZP_05430437.1| transcription elongation factor GreA [Clostridium thermocellum DSM
           2360]
 gi|281419339|ref|ZP_06250354.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20]
 gi|166200659|sp|A3DJG6|GREA_CLOTH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|125715603|gb|ABN54095.1| transcription elongation factor GreA [Clostridium thermocellum ATCC
           27405]
 gi|255990530|gb|EEU00650.1| transcription elongation factor GreA [Clostridium thermocellum DSM
           2360]
 gi|281406959|gb|EFB37222.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20]
 gi|316939493|gb|ADU73527.1| transcription elongation factor GreA [Clostridium thermocellum DSM
           1313]
          Length = 159

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 93/154 (60%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            ++ +T +G  K++QEL   +  +R  + + I +A ++GD+SEN+EY  AK  Q   EGR
Sbjct: 5   KEVVLTYEGLQKLEQELENLKTVKRREVAERIKQALSFGDISENSEYDEAKNEQAYIEGR 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + +LEN++  A+VID   +  D ++ G+ V +++    ++  Y IVG  EAD     +S 
Sbjct: 65  IFQLENMLKNAKVIDEEDIQTDVVSIGSKVKVLDMEFDEEVEYYIVGSTEADPSQYKISN 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +ALIG ++GDI+ V  P G   ++IL++ 
Sbjct: 125 ESPVGKALIGGKIGDIVEVTVPDGVIKFKILEIR 158


>gi|188590469|ref|YP_001919617.1| transcription elongation factor GreA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251779196|ref|ZP_04822116.1| transcription elongation factor GreA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|238689627|sp|B2UXU9|GREA_CLOBA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|188500750|gb|ACD53886.1| transcription elongation factor GreA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243083511|gb|EES49401.1| transcription elongation factor GreA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 160

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 92/158 (58%), Gaps = 2/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  +  +T +G  K++ EL + +  +R  I + I  A  YGDLSEN+EY  AK  Q  
Sbjct: 1   MSEPKQYVMTYEGVKKLEGELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EG++ +LEN +  A V+D S +  D ++ G+ V + + +  ++  Y IVG  EAD  S 
Sbjct: 61  TEGKILQLENKLKNAVVVDESEIPKDIVSVGSKVKVKDYDFDEEVEYSIVGSAEADPMSF 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+ +AL+GK++GDI+ V  P G   +EIL + 
Sbjct: 121 KISNESPVGKALVGKKIGDIVDVVVPDGISKFEILDIQ 158


>gi|322807846|emb|CBZ05421.1| transcription elongation factor GreA [Clostridium botulinum H04402
           065]
          Length = 160

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 2/157 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +G  K+++EL + +  +R  I + I  A ++GDLSEN+EY  AK  Q  
Sbjct: 1   MSEAKKYVMTYEGVKKLEEELEYLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN++  A ++D + +  D ++ G+ V + +    ++  Y IVG  EAD  + 
Sbjct: 61  VEGRIIQLENMLKNASIVDENEVPKDIVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNN 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+   LIGK++GDII V  P G   YEIL+V
Sbjct: 121 KISNESPVGHGLIGKKVGDIIEVTVPDGISKYEILEV 157


>gi|158319500|ref|YP_001512007.1| transcription elongation factor GreA [Alkaliphilus oremlandii
           OhILAs]
 gi|166987608|sp|A8MLU4|GREA_ALKOO RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|158139699|gb|ABW18011.1| transcription elongation factor GreA [Alkaliphilus oremlandii
           OhILAs]
          Length = 159

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 91/158 (57%), Gaps = 2/158 (1%)

Query: 1   MV--DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M+   ++ +T++G  K++ EL   +   R  I + I +A A+GD+SEN+EY  AK  Q  
Sbjct: 1   MMADREVVLTAQGLKKLEDELELLKTVRRKEIAERIKQAIAFGDISENSEYDEAKNEQAQ 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ +LE ++ +A +ID   ++ D ++ G+ V + +    +   Y IVG  EAD    
Sbjct: 61  VEDRINKLETMLRKAVIIDEEDINTDIVSIGSIVQVNDLEFDEIVEYTIVGSTEADPYEL 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+ RAL+G ++GD++ V  P G   YEIL++ 
Sbjct: 121 KISNESPVGRALLGTKVGDVVEVQIPDGVTKYEILKIT 158


>gi|326693573|ref|ZP_08230578.1| transcription elongation factor greA [Leuconostoc argentinum KCTC
           3773]
          Length = 160

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/159 (40%), Positives = 98/159 (61%), Gaps = 3/159 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T++G +K+Q EL      +RP I   I  AR+YGDLSEN+EYQ+AK+ Q  
Sbjct: 1   MSEEKVFPMTAEGREKLQAELEDLISNQRPEITNRIQIARSYGDLSENSEYQSAKDEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  L+ +I  AE+ID +  + D ++ G TV+  E    + + Y IVG  E+D  +G
Sbjct: 61  VEGRILTLKKMIENAEIIDPNATASDEVSLGKTVTFKELPDEEPETYAIVGSTESDPLAG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
            +S  S +A AL+GK++GD ++V  P G+    EIL+V 
Sbjct: 121 KISNESAMAVALLGKKVGDKVAVPLPSGDSIEVEILKVE 159


>gi|283480153|emb|CAY76069.1| Transcription elongation factor greB [Erwinia pyrifoliae DSM 12163]
          Length = 187

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++ ++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 29  MKTKLITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 88

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + +  ++D S     ++ FGA V +   +   K  ++IVG  E   ++  +S
Sbjct: 89  RVRYLTKCLEQLRIVDYSPQQDGKVFFGAWVEVENDDGDIK-RFRIVGYDEIFGRNDYIS 147

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD  +V  P GE  + I  + ++
Sbjct: 148 IDSPMARALLKKEVGDAATVFTPAGEALWYINDISYV 184


>gi|224537713|ref|ZP_03678252.1| hypothetical protein BACCELL_02595 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520636|gb|EEF89741.1| hypothetical protein BACCELL_02595 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 154

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 95/152 (62%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ K+  EL+  +  ERP+I  AI+EAR  GDLSENAEY AAKE Q + E ++ +
Sbjct: 3   YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ II  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 63  LKTIIADAKIIDESKLKTDSVQILNKVELKNIKNGMKMIYTIVSESEANLKEGKISVNTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++GD+  +  P G    E++ + +
Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGMVNLEVVNISF 154


>gi|15896445|ref|NP_349794.1| transcription elongation factor GreA [Clostridium acetobutylicum
           ATCC 824]
 gi|25453001|sp|Q97EB6|GREA_CLOAB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|15026268|gb|AAK81134.1|AE007815_4 Transcription elongation factor, greA [Clostridium acetobutylicum
           ATCC 824]
 gi|325510603|gb|ADZ22239.1| transcription elongation factor GreA [Clostridium acetobutylicum EA
           2018]
          Length = 158

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 91/154 (59%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            K  +T KG  K+++EL + +  +R  I + I  A ++GDLSEN+EY  AK  Q   EGR
Sbjct: 5   KKYVITYKGVKKLEEELEYLKTTKRKEITEKIKVALSFGDLSENSEYDEAKNDQAFVEGR 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +A++EN++  A VID S +  D ++ G+ V + +    ++  + IVG  EAD     +S 
Sbjct: 65  IAQIENMLKNANVIDESELKNDVVSVGSKVMVKDYQFDEEIEFSIVGSAEADPIENKISN 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+  ALIGK++GD I VN P G   Y+IL + 
Sbjct: 125 ESPVGSALIGKKVGDEIEVNVPDGVDKYKILAIK 158


>gi|170766595|ref|ZP_02901048.1| transcription elongation factor GreB [Escherichia albertii TW07627]
 gi|170124033|gb|EDS92964.1| transcription elongation factor GreB [Escherichia albertii TW07627]
          Length = 158

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAIVNTPAGEASWYVNAIEYV 156


>gi|258623151|ref|ZP_05718162.1| transcription elongation factor GreA [Vibrio mimicus VM573]
 gi|258625329|ref|ZP_05720229.1| transcription elongation factor GreA [Vibrio mimicus VM603]
 gi|258582395|gb|EEW07244.1| transcription elongation factor GreA [Vibrio mimicus VM603]
 gi|258584571|gb|EEW09309.1| transcription elongation factor GreA [Vibrio mimicus VM573]
          Length = 158

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/159 (44%), Positives = 117/159 (73%), Gaps = 2/159 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M++K+P+T +G +K+ +E   R  + RP+I +AI+EAR  GDL ENAEY AA+E Q + E
Sbjct: 1   MMEKVPMTVRG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICE 59

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
            ++ ++E  ++ A+VID++ M    ++ FG+TV++++ N+ ++K YQIVGD EAD++SG 
Sbjct: 60  AQIRDIEYKLSVAQVIDVTGMDNSGKVIFGSTVTVIDVNTDEEKTYQIVGDDEADIKSGR 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S++SPIAR LIGK  GD +++  PGG+K +EI +V ++
Sbjct: 120 ISVNSPIARGLIGKFEGDEVAIATPGGDKVFEIDRVEYL 158


>gi|229088223|ref|ZP_04220162.1| Transcription elongation factor greA [Bacillus cereus Rock3-44]
 gi|228695096|gb|EEL48133.1| Transcription elongation factor greA [Bacillus cereus Rock3-44]
          Length = 161

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/152 (39%), Positives = 94/152 (61%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T +G  K++ E+   +   R  +++ I  AR++GDLSEN+EY AAK+ Q   EGR+ 
Sbjct: 10  YPMTLEGKQKLENEVEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAFVEGRIT 69

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LEN+I  A +I+ +      +  G TV+  E   GD++ Y IVG  EAD   G +S  S
Sbjct: 70  QLENMIRNAVIIEDTGEESTVVTLGKTVTFKELPDGDEEAYTIVGSAEADPFEGRISNDS 129

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA++L+GK++G+ +++  PGGE   EI+ V 
Sbjct: 130 PIAKSLLGKQIGEKVAIQTPGGEMQVEIISVK 161


>gi|330718836|ref|ZP_08313436.1| transcription elongation factor GreA [Leuconostoc fallax KCTC 3537]
          Length = 159

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/159 (40%), Positives = 93/159 (58%), Gaps = 3/159 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T +G   ++QEL      +RP I K I  AR+YGDLSEN+EYQ+AK+ Q  
Sbjct: 1   MSEEKTFPMTLEGKTSLEQELDNLIAVQRPEITKRIQIARSYGDLSENSEYQSAKDEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  +  +I  AE+ID++  + D ++ G TV+  E    + + Y IVG  EAD  SG
Sbjct: 61  VEGRIQTIRKMIENAEIIDVADTASDEVSLGKTVTFKELPDEEAETYTIVGSVEADPLSG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
            +S  SP+A ALI  ++GD + V  P G     EIL V 
Sbjct: 121 KISNESPMANALINHKVGDTVDVPLPNGINIKVEILSVK 159


>gi|325299317|ref|YP_004259234.1| transcription elongation factor GreA [Bacteroides salanitronis DSM
           18170]
 gi|324318870|gb|ADY36761.1| transcription elongation factor GreA [Bacteroides salanitronis DSM
           18170]
          Length = 151

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/151 (37%), Positives = 97/151 (64%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           ++ +G+ K+  EL+  +  ERP+++ AI+EAR  GDLSENAEY AAKE Q + E ++ +L
Sbjct: 1   MSEEGYQKLVAELKHLEAVERPKVVAAIAEARDKGDLSENAEYDAAKEAQAMLEMKINQL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  I  A++ID S +  D +   + V L    +G K  Y IV + EA+++ G +S+++PI
Sbjct: 61  KATIGDAKIIDTSKLKADTVQILSRVELKNVKTGMKMAYTIVSETEANLKQGKISVNTPI 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           A+ L+GK++GD+  +  P G+ + E+  + +
Sbjct: 121 AQGLLGKKVGDVAEITIPQGKISLEVTGISF 151


>gi|255693071|ref|ZP_05416746.1| transcription elongation factor GreA [Bacteroides finegoldii DSM
           17565]
 gi|260621111|gb|EEX43982.1| transcription elongation factor GreA [Bacteroides finegoldii DSM
           17565]
          Length = 154

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 96/152 (63%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ K+  EL+  +  ERP+I  AI+EAR  GDLSENAEY AAKE Q + E R+ +
Sbjct: 3   YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ +I  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 63  LKTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++G++  +  P G+   E++ + +
Sbjct: 123 IAQGLLGKKVGEVAEITVPQGKIALEVVNISF 154


>gi|154686872|ref|YP_001422033.1| transcription elongation factor GreA [Bacillus amyloliquefaciens
           FZB42]
 gi|308174431|ref|YP_003921136.1| transcription elongation factor [Bacillus amyloliquefaciens DSM 7]
 gi|166200649|sp|A7Z726|GREA_BACA2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|154352723|gb|ABS74802.1| GreA [Bacillus amyloliquefaciens FZB42]
 gi|307607295|emb|CBI43666.1| transcription elongation factor [Bacillus amyloliquefaciens DSM 7]
          Length = 157

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 101/157 (64%), Gaps = 3/157 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++QEL   +  +R  +++ I  AR++GDLSEN+EY +AKE Q  
Sbjct: 1   MAQEKVFPMTHEGKQKLEQELEQLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  LEN+I  A++I+    S + +  G TVS +E   G++++Y IVG  EAD   G
Sbjct: 61  VEGRITTLENMIRNAKIIEDDGGS-NVVGLGKTVSFIELPDGEEESYTIVGSAEADPFEG 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SPIA++L+G+++ + ++V  PGGE   +I+++
Sbjct: 120 KISNDSPIAKSLLGRKVDEEVTVQTPGGEMLVKIVKI 156


>gi|78222321|ref|YP_384068.1| GreA/GreB family elongation factor [Geobacter metallireducens
           GS-15]
 gi|78193576|gb|ABB31343.1| GreA/GreB family elongation factor [Geobacter metallireducens
           GS-15]
          Length = 161

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 88/158 (55%), Gaps = 2/158 (1%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  +   +T +G  K++ EL W  +EERPR+ + +S+A A GD SENAEY   K+     
Sbjct: 1   MAKQSDYITPEGAKKLRDELAWLWKEERPRVTQGVSDAAAEGDRSENAEYIYGKKRLREI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           + R+  L   +    V++    +  ++ FGA +  +E   GD+  Y++VG  E D   G 
Sbjct: 61  DRRIRFLTQRLDHLTVVEDPPPATGKVFFGAWI-RLETEEGDEVIYRVVGPDETDASKGF 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +SI SP+ +AL+G+  GD + V  P GE  + +L+V +
Sbjct: 120 ISIDSPMGKALLGRNEGDEVPVRRPAGEAVFTVLEVAY 157


>gi|307243775|ref|ZP_07525909.1| transcription elongation factor GreA [Peptostreptococcus stomatis
           DSM 17678]
 gi|306492851|gb|EFM64870.1| transcription elongation factor GreA [Peptostreptococcus stomatis
           DSM 17678]
          Length = 161

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 90/155 (58%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             +I +T +G+DK++ EL   +   R  + + +  A ++GDLSENAEY  AK+ Q   E 
Sbjct: 6   SKEIILTQEGYDKLESELELLKTTRRKEVAERLKVAISFGDLSENAEYDEAKKEQAALEE 65

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +LEN+   A +ID S ++ D I  G+ V + +++  ++  Y IVG  EAD   G +S
Sbjct: 66  RILKLENMTRVAVIIDESNVNLDIITVGSVVKIYDEDFDEELEYTIVGSAEADPYDGKIS 125

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+ +AL+G+  GD++ V  P G    +++ + 
Sbjct: 126 NESPVGKALLGRAKGDVVEVTVPDGIAKLKVVDIK 160


>gi|296131771|ref|YP_003639018.1| GreA/GreB family elongation factor [Thermincola sp. JR]
 gi|296030349|gb|ADG81117.1| GreA/GreB family elongation factor [Thermincola potens JR]
          Length = 158

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 93/156 (59%), Gaps = 1/156 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K + +T  G  K++ EL   +  +R  + + I +A  +GD+SEN+EY+ AK  Q   
Sbjct: 1   MVEKEVILTLDGLKKLEHELEQLKTVKRREVAERIKQAIEFGDISENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A VID   +  D ++ G+TV L +   GD+  Y IVG  EAD  +  
Sbjct: 61  EGRILTLEKMLRNARVIDEGDVHTDVVSIGSTVLLKDLEFGDEIAYTIVGSAEADPSANK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SP+ +AL+G++ G+II VN P G   Y+I+ +
Sbjct: 121 ISNESPVGKALLGQKTGEIIEVNVPAGTLKYQIMGI 156


>gi|288576392|ref|ZP_06394360.1| transcription elongation factor GreB [Neisseria mucosa ATCC 25996]
 gi|288565631|gb|EFC87191.1| transcription elongation factor GreB [Neisseria mucosa ATCC 25996]
          Length = 256

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 72/155 (46%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A + GD SEN +Y   K      + R+
Sbjct: 99  KNYITPVGWQALKDELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 158

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F      + +  G ++  +IVG  E D     +S  
Sbjct: 159 RFLTKRLEAAVVVDPELREATDQVFFGATVGLLRGDGREQTVKIVGVDEIDTAQNKISWI 218

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR LI    GD + +N P G +  EIL V +I
Sbjct: 219 SPLARCLIKAREGDEVILNTPEGREEIEILSVEYI 253


>gi|23015545|ref|ZP_00055318.1| COG0782: Transcription elongation factor [Magnetospirillum
           magnetotacticum MS-1]
          Length = 182

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +  +GF  ++ EL    + ERP++++ +S A   GD SEN +Y   K+     + R+
Sbjct: 27  KNYMRPQGFAALKAELSHLHKVERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRI 86

Query: 64  AELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  A V+D        ++ FGATV+        +    IVG  EAD++ GL+S 
Sbjct: 87  RFLTKRMESAHVVDPDQQKNRDQVFFGATVTYANARDE-EITVTIVGIDEADLERGLISW 145

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+    GD + V  P G +  E++ + +
Sbjct: 146 ISPVARALLKASEGDTVPVRTPSGTEMIEVVAIRY 180


>gi|261867402|ref|YP_003255324.1| transcription elongation factor GreB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412734|gb|ACX82105.1| transcription elongation factor GreB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 160

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G++ + +EL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWNMLDRELKFLWKEERPQVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D S     ++ FGA V L  ++   K+ Y+IVG  E D  +  +
Sbjct: 61  RRVRFLTKRLEVLQIVDYSPKQESKVFFGAWVELENEDGEVKQ-YRIVGCDEFDPANNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK+  D I+V+ P G+    + ++ +
Sbjct: 120 SIDSPVARALIGKQEDDEITVDTPAGKIWLCVNRIWY 156


>gi|76810661|ref|YP_334421.1| transcription elongation factor GreB [Burkholderia pseudomallei
           1710b]
 gi|134280310|ref|ZP_01767021.1| transcription elongation factor GreB [Burkholderia pseudomallei
           305]
 gi|167739719|ref|ZP_02412493.1| transcription elongation factor GreB [Burkholderia pseudomallei 14]
 gi|167825326|ref|ZP_02456797.1| transcription elongation factor GreB [Burkholderia pseudomallei 9]
 gi|167903804|ref|ZP_02491009.1| transcription elongation factor GreB [Burkholderia pseudomallei
           NCTC 13177]
 gi|217421177|ref|ZP_03452682.1| transcription elongation factor GreB [Burkholderia pseudomallei
           576]
 gi|226193760|ref|ZP_03789362.1| transcription elongation factor GreB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813377|ref|YP_002897828.1| transcription elongation factor GreB [Burkholderia pseudomallei
           MSHR346]
 gi|254258154|ref|ZP_04949208.1| transcription elongation factor GreB [Burkholderia pseudomallei
           1710a]
 gi|76580114|gb|ABA49589.1| transcription elongation factor GreB [Burkholderia pseudomallei
           1710b]
 gi|134248317|gb|EBA48400.1| transcription elongation factor GreB [Burkholderia pseudomallei
           305]
 gi|217396589|gb|EEC36606.1| transcription elongation factor GreB [Burkholderia pseudomallei
           576]
 gi|225934065|gb|EEH30050.1| transcription elongation factor GreB [Burkholderia pseudomallei
           Pakistan 9]
 gi|237504521|gb|ACQ96839.1| transcription elongation factor GreB [Burkholderia pseudomallei
           MSHR346]
 gi|254216843|gb|EET06227.1| transcription elongation factor GreB [Burkholderia pseudomallei
           1710a]
          Length = 187

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 73/154 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL     E RP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLHLIDEARPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G++    IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQDGNEHTVTIVGVDEVDLDRGHVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL+   +GD +++  P G +  ++L V +
Sbjct: 148 SPVARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181


>gi|153815947|ref|ZP_01968615.1| hypothetical protein RUMTOR_02192 [Ruminococcus torques ATCC 27756]
 gi|317500711|ref|ZP_07958929.1| transcription elongation factor [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331089814|ref|ZP_08338707.1| transcription elongation factor greA [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846766|gb|EDK23684.1| hypothetical protein RUMTOR_02192 [Ruminococcus torques ATCC 27756]
 gi|316897905|gb|EFV19958.1| transcription elongation factor [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330403511|gb|EGG83069.1| transcription elongation factor greA [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 161

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 90/157 (57%), Gaps = 2/157 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T  G   ++ EL   +  +R  +   I EAR  GDLSENAEY AAK+ Q  
Sbjct: 1   MAEAKKRLLTYAGLKALEDELETLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRD 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ELE I+  AEV+    +  D+I  G TV + +    ++  ++IVG  EA+   G
Sbjct: 61  IEARIEELEGILKNAEVVVEDEVDFDKINVGCTVKVFDITFDEEMEFKIVGSTEANSLVG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+ +ALIGK++GD +SV    GE  Y++L++
Sbjct: 121 KISNESPVGQALIGKKVGDTVSVETQAGEIKYKVLEI 157


>gi|71279513|ref|YP_271605.1| transcription elongation factor GreB [Colwellia psychrerythraea
           34H]
 gi|71145253|gb|AAZ25726.1| transcription elongation factor GreB [Colwellia psychrerythraea
           34H]
          Length = 160

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+D++ +EL++  ++ERP+I +++SEA A GD SENAEY   K      +
Sbjct: 1   MKRSSYITRAGWDRLDKELKFLWKDERPKITRSVSEAAAQGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L        ++        R+ FGA V+L+ ++   +  Y++VG  E DV+ G +
Sbjct: 61  RRVRFLMKRTEDLTIVYPDPQQEGRVFFGAWVTLINED-DIEVVYRLVGPDEWDVKRGEI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+GK + D I VNAP GE+ ++I+ + +
Sbjct: 120 SIDSPMARALLGKAVDDEIVVNAPEGERVFDIVNISY 156


>gi|310765656|gb|ADP10606.1| Transcription elongation factor greB [Erwinia sp. Ejp617]
          Length = 187

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++ ++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 29  MKTKLITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDS 88

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + +  ++D S     ++ FGA V +   +   K  ++IVG  E   ++  +S
Sbjct: 89  RVRYLTKCLEQLRIVDYSPQQDGKVFFGAWVEVENDDGDIK-RFRIVGYDEIFGRNDYIS 147

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD  +V  P GE  + +  + ++
Sbjct: 148 IDSPMARALLKKEVGDAATVFTPAGEALWYVNDISYV 184


>gi|94309804|ref|YP_583014.1| transcription elongation factor GreB [Cupriavidus metallidurans
           CH34]
 gi|93353656|gb|ABF07745.1| Transcription elongation factor [Cupriavidus metallidurans CH34]
          Length = 186

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T+ G+ +++ EL      ERP I++ +S A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYITAAGYKRLRDELMHLIDVERPDIVQIVSWAASNGDRSENGDYLYGKKRMREIDRRI 88

Query: 64  AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   + +AEV+D S     D+I FGATV+   ++   +    IVG  E D+ S  VS 
Sbjct: 89  RFLTRRLDKAEVVDPSMQGDNDQIFFGATVTYANQSGE-ETTITIVGMDEVDLDSNHVSW 147

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SPIA+ALI    GD + +  P G +  +IL+V +
Sbjct: 148 ISPIAKALIKAREGDTVPLRTPAGIEQIDILEVRY 182


>gi|303242488|ref|ZP_07328968.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2]
 gi|302589956|gb|EFL59724.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2]
          Length = 158

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV K + +T +G  K++QEL + +  +R  + + I +A A+GDLSEN+EY  AK  Q   
Sbjct: 1   MVKKEVVLTYEGLQKLEQELEFLKAVKRREVAERIKQALAFGDLSENSEYDEAKNEQAHV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+ +LEN++  A+VID   +  D ++ G+ V++++    ++  Y IVG  EA+     
Sbjct: 61  EGRIVQLENMLKNAKVIDEDEVKTDVVSVGSKVTILDIEFNEEIEYYIVGSAEANPSQFK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  AL+GK+ G ++ VN P G   ++I+ + 
Sbjct: 121 ISNESPVGSALMGKKKGTVVDVNVPDGIVKFKIVNIK 157


>gi|293390854|ref|ZP_06635188.1| transcription elongation factor GreB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951388|gb|EFE01507.1| transcription elongation factor GreB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 160

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G++ + +EL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWNMLDRELKFLWKEERPQVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D S     ++ FGA V L  ++   K+ Y+IVG  E D  +  +
Sbjct: 61  RRVRFLTKRLEVLQIVDYSPKQEGKVFFGAWVELENEDGEVKQ-YRIVGCDEFDPANNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK+  D I+V+ P G+    + ++ +
Sbjct: 120 SIDSPVARALIGKQEDDEITVDTPAGKIWLCVNRIWY 156


>gi|113866980|ref|YP_725469.1| transcription elongation factor GreB [Ralstonia eutropha H16]
 gi|113525756|emb|CAJ92101.1| transcription elongation factor [Ralstonia eutropha H16]
          Length = 187

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 86/155 (55%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T++G+++++ EL      +RP +++ +S A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYITAEGYNRLRNELMQLIDVDRPDVVQIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   + +AEV+D S     D+I FGATV+   +    +    IVG  E D+ S  VS 
Sbjct: 89  RFLTRRLDKAEVVDPSLQGDNDQIFFGATVTYANRAGE-ETTITIVGMDEVDLDSNHVSW 147

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SPIA+ALI    GD +++  P G +  +IL+V +
Sbjct: 148 ISPIAKALIKAREGDTVALRTPAGVEQIDILEVRY 182


>gi|237728725|ref|ZP_04559206.1| transcription elongation factor GreB [Citrobacter sp. 30_2]
 gi|283835801|ref|ZP_06355542.1| hypothetical protein CIT292_10195 [Citrobacter youngae ATCC 29220]
 gi|226909347|gb|EEH95265.1| transcription elongation factor GreB [Citrobacter sp. 30_2]
 gi|291067966|gb|EFE06075.1| transcription elongation factor GreB [Citrobacter youngae ATCC
           29220]
          Length = 157

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   +   +  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGDIR-KFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN PGGE ++ + ++ ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPGGEASWYVNEIEYV 156


>gi|194289080|ref|YP_002004987.1| transcription elongation factor greb [Cupriavidus taiwanensis LMG
           19424]
 gi|193222915|emb|CAQ68920.1| TRANSCRIPTION ELONGATION FACTOR (TRANSCRIPT CLEAVAGE FACTOR)
           [Cupriavidus taiwanensis LMG 19424]
          Length = 187

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 79/154 (51%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T++G+ +++ EL      ERP +++ +S A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYITAEGYARLRNELMQLIDVERPDVVQIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   + +AEV+D S    +   F          SG++    IVG  E D+    VS  
Sbjct: 89  RFLTRRLDKAEVVDPSLQGDNDQIFFGATVTYAHASGEETTITIVGMDEVDLDHNHVSWI 148

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIA+AL+    GD +++  P G +  +IL+V +
Sbjct: 149 SPIAKALLKAREGDTVALRTPAGVEQIDILEVRY 182


>gi|160883671|ref|ZP_02064674.1| hypothetical protein BACOVA_01643 [Bacteroides ovatus ATCC 8483]
 gi|260175216|ref|ZP_05761628.1| transcription elongation factor greA [Bacteroides sp. D2]
 gi|293373408|ref|ZP_06619763.1| putative transcription elongation factor GreA [Bacteroides ovatus
           SD CMC 3f]
 gi|315923447|ref|ZP_07919687.1| transcription elongation factor greA [Bacteroides sp. D2]
 gi|156111084|gb|EDO12829.1| hypothetical protein BACOVA_01643 [Bacteroides ovatus ATCC 8483]
 gi|292631546|gb|EFF50169.1| putative transcription elongation factor GreA [Bacteroides ovatus
           SD CMC 3f]
 gi|313697322|gb|EFS34157.1| transcription elongation factor greA [Bacteroides sp. D2]
          Length = 176

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/150 (38%), Positives = 94/150 (62%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ K+  EL+  +  ERP+I  AI+EAR  GDLSENAEY AAKE Q + E R+ +
Sbjct: 25  YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 84

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 85  LKATIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMIYTIVSESEANLKEGKISVNTP 144

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+GK++GD+  +  P G+   E++ +
Sbjct: 145 IAQGLLGKKVGDVAEITVPQGKIALEVVNI 174


>gi|332528408|ref|ZP_08404400.1| transcription elongation factor [Hylemonella gracilis ATCC 19624]
 gi|332042087|gb|EGI78421.1| transcription elongation factor [Hylemonella gracilis ATCC 19624]
          Length = 185

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 84/155 (54%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL     EERP++++ +  A + GD SEN +Y   K+     + R+
Sbjct: 27  KNYITPAGYARLRAELMQLIDEERPKVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRI 86

Query: 64  AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV D S     D++ FGATV+  +   G ++   I+G  EAD   G VS 
Sbjct: 87  RFLTKRLEIAEVADPSVHHGSDQVFFGATVTYADGA-GVERTITILGIDEADNLRGQVSW 145

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+AR L+   +GD++ +  P G +  E+L+V +
Sbjct: 146 ISPVARTLLKARVGDVLKLVTPAGVEEIEVLEVSY 180


>gi|73542156|ref|YP_296676.1| transcription elongation factor GreB [Ralstonia eutropha JMP134]
 gi|72119569|gb|AAZ61832.1| transcription elongation factor GreB [Ralstonia eutropha JMP134]
          Length = 188

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 85/155 (54%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T+ G+++++ EL      +RP +++ +S A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYITADGYNRLRNELMHLIDVDRPDVVQIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   + +AEV+D S     D+I FGATV+   ++   +    IVG  E D+ +  VS 
Sbjct: 89  RFLTRRLDKAEVVDPSLQGDNDQIFFGATVTYANQSGE-ETTITIVGMDEVDLDTNHVSW 147

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SPIA+ALI    GD +++  P G +  +IL V +
Sbjct: 148 ISPIAKALIKAREGDTVALRTPAGVEQIDILDVSY 182


>gi|163846801|ref|YP_001634845.1| transcription elongation factor GreA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222524620|ref|YP_002569091.1| transcription elongation factor GreA [Chloroflexus sp. Y-400-fl]
 gi|229485761|sp|A9WK05|GREA_CHLAA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799554|sp|B9LBX1|GREA_CHLSY RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|163668090|gb|ABY34456.1| transcription elongation factor GreA [Chloroflexus aurantiacus
           J-10-fl]
 gi|222448499|gb|ACM52765.1| transcription elongation factor GreA [Chloroflexus sp. Y-400-fl]
          Length = 157

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T +G  +++ EL +    ER +I + I+ A+  GD+SE+ EY+ AK+ Q L 
Sbjct: 1   MTEKPTYLTREGRARLEAELEYLTTVERKQIAERIAAAKELGDISESGEYEDAKKAQALL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+ EL+++++RAEVID    S   +  G++V++  ++ G ++ + IVG  EA+ + G 
Sbjct: 61  EGRIRELKHLLSRAEVIDEDQASNGEVRVGSSVTVRFEDDGTEETWTIVGSAEANPRQGR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  AL+GK   + ++V+ P G     IL+V 
Sbjct: 121 ISNESPLGAALLGKRARNKVTVHTPSGVMKLTILKVR 157


>gi|288555392|ref|YP_003427327.1| transcription elongation factor GreA [Bacillus pseudofirmus OF4]
 gi|288546552|gb|ADC50435.1| transcription elongation factor GreA [Bacillus pseudofirmus OF4]
          Length = 158

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 98/157 (62%), Gaps = 2/157 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T  G  K+++EL + + E R  +++ I  AR++GDLSEN+EY +AKE Q  
Sbjct: 1   MAEEKKHYMTEDGKRKLEEELEFLKTERRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+A+LE +I  A +I+    S   ++ G  V  +E   GD++ Y IVG  E+D   G
Sbjct: 61  VEGRIAQLEKMIRNAVMIEEEAGSSHAVSLGKRVKFIELPDGDEEEYTIVGSAESDPAEG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+A++++G+ +GD ++VN P GE   EIL++
Sbjct: 121 KISNDSPMAQSILGRSVGDKVTVNTPAGEMKIEILEI 157


>gi|167895419|ref|ZP_02482821.1| transcription elongation factor GreB [Burkholderia pseudomallei
           7894]
 gi|254181033|ref|ZP_04887631.1| transcription elongation factor GreB [Burkholderia pseudomallei
           1655]
 gi|184211572|gb|EDU08615.1| transcription elongation factor GreB [Burkholderia pseudomallei
           1655]
          Length = 186

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 73/154 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL     E RP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 27  KNYITPAGHKRLRDELLHLIDEARPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 86

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G++    IVG  E D+  G VS  
Sbjct: 87  RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQDGNEHTVTIVGVDEVDLDRGHVSWI 146

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL+   +GD +++  P G +  ++L V +
Sbjct: 147 SPVARALLKARVGDTVTLLTPVGPEPIDVLDVRY 180


>gi|283787960|ref|YP_003367825.1| transcription elongation factor [Citrobacter rodentium ICC168]
 gi|282951414|emb|CBG91113.1| transcription elongation factor [Citrobacter rodentium ICC168]
          Length = 157

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   +   +  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCMEHLKIVDYSPQQEGKVFFGAWVEIENDDGDTR-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156


>gi|15613839|ref|NP_242142.1| transcription elongation factor GreA [Bacillus halodurans C-125]
 gi|20138372|sp|Q9KDD7|GREA_BACHD RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|10173892|dbj|BAB04995.1| transcriptional elongation factor [Bacillus halodurans C-125]
          Length = 158

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 2/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +G  K+++EL + + E R  +++ I  AR++GDLSEN+EY +AKE Q  
Sbjct: 1   MAEEKKHYMTLEGKKKLEEELEYLKTERRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR++++E +I  AE+I+ S    + ++ G TV  VE   G+++ Y IVG  E+D   G
Sbjct: 61  VEGRISQIEKMIRNAEIIEESEGDANVVSLGKTVKFVEIPDGEEEEYTIVGSAESDPFEG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+A++L+G  + D++ VN PGGE   +IL++ 
Sbjct: 121 KISNDSPMAQSLLGHTIDDVVIVNTPGGEMEVKILEIR 158


>gi|330721758|gb|EGG99749.1| Transcription elongation factor GreB [gamma proteobacterium
           IMCC2047]
          Length = 170

 Score =  132 bits (332), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 77/153 (50%), Gaps = 1/153 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T  G  ++Q E       +RP++ +A+SEA A GD  ENAEY   K+     + R+ 
Sbjct: 13  NYITPDGRQRLQDEFDQLWHVKRPQVTQAVSEAAAQGDRPENAEYIYGKKQLREIDSRLR 72

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   +   +V+D       R+ F A V L  +       Y+IVG  E DV    +S+ S
Sbjct: 73  FLSKRLEHLKVVDRLPADQTRLFFCAWVMLENEAGEQ-LEYRIVGPDEFDVHPAYISMDS 131

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P A+AL+ K+ GD + V AP G   YEI+ V +
Sbjct: 132 PTAKALMKKQTGDEVEVVAPSGSVYYEIIAVRY 164


>gi|167581001|ref|ZP_02373875.1| transcription elongation factor GreB [Burkholderia thailandensis
           TXDOH]
          Length = 187

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 73/154 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL     EERP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLHLIDEERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G +    IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQDGIEHTVTIVGIDEVDLDRGHVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+   +GD +++  P G +  ++L V +
Sbjct: 148 SPIARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181


>gi|170695455|ref|ZP_02886600.1| transcription elongation factor GreA [Burkholderia graminis C4D1M]
 gi|170139646|gb|EDT07829.1| transcription elongation factor GreA [Burkholderia graminis C4D1M]
          Length = 141

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/140 (56%), Positives = 100/140 (71%), Gaps = 1/140 (0%)

Query: 20  RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIS 79
           +  +  ERP +I +I+EARA GDLSENAEY AAKE Q   EGR+AE+E+ +  A+VID S
Sbjct: 2   QRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEGRIAEIESKLAGAQVIDPS 61

Query: 80  TMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
            +    R+ FGATV L + +SG    YQIVGD EAD+  GL+SISSPIARALIGK  GD+
Sbjct: 62  QVEADGRVVFGATVELEDLDSGASVKYQIVGDDEADIDHGLISISSPIARALIGKSEGDV 121

Query: 139 ISVNAPGGEKTYEILQVLWI 158
            SV APGG + YEI+ V ++
Sbjct: 122 ASVQAPGGVREYEIIAVSYV 141


>gi|217077586|ref|YP_002335304.1| transcription elongation factor GreA [Thermosipho africanus TCF52B]
 gi|226737011|sp|B7ID86|GREA_THEAB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|217037441|gb|ACJ75963.1| transcription elongation factor GreA [Thermosipho africanus TCF52B]
          Length = 156

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 95/154 (61%), Gaps = 2/154 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           + I +T +G++K++ EL   +Q+    I + I EAR  GDLSEN+EYQ AK  Q     R
Sbjct: 4   ESIYLTKEGYEKLKAELDQLKQKLMFEIAQRIKEARELGDLSENSEYQEAKNEQGRIAAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELEN++++AEVI+   +  + I  G  V +   ++G++K  QIV   EADV +  +S 
Sbjct: 64  INELENMLSKAEVIE--GLDTNVINIGNWVLIKNLDTGEEKTIQIVTPHEADVFNNKISF 121

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SPI R L+GK++G+++ + AP G   Y+IL + 
Sbjct: 122 ESPIGRVLVGKKVGEVVKIKAPKGVFKYQILGIK 155


>gi|238021831|ref|ZP_04602257.1| hypothetical protein GCWU000324_01735 [Kingella oralis ATCC 51147]
 gi|237866445|gb|EEP67487.1| hypothetical protein GCWU000324_01735 [Kingella oralis ATCC 51147]
          Length = 162

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 1/159 (0%)

Query: 1   MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M + K  +T  G   +Q EL     +ERP I++ ++ A + GD SEN +Y   K      
Sbjct: 1   MSEIKNYMTPAGHAALQNELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           + R+  L   +  A V++  T       F A    +E+ +G ++  +IVG+ E D     
Sbjct: 61  DRRIRFLTKRLQDAVVVNPETREPTDQVFFAATVTLERGNGAEQTVRIVGEDEIDAAHNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S  SP+ARALI    GD + +N P G +  EIL V +I
Sbjct: 121 ISWKSPLARALIKAREGDSVWLNTPEGREQIEILAVEYI 159


>gi|312968284|ref|ZP_07782494.1| transcription elongation factor GreB [Escherichia coli 2362-75]
 gi|312287109|gb|EFR15019.1| transcription elongation factor GreB [Escherichia coli 2362-75]
          Length = 158

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K +  A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLVTREGYEKLKQELNYLWREERPEVTKKVIWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156


>gi|294638113|ref|ZP_06716370.1| transcription elongation factor GreB [Edwardsiella tarda ATCC
           23685]
 gi|291088745|gb|EFE21306.1| transcription elongation factor GreB [Edwardsiella tarda ATCC
           23685]
          Length = 158

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+DK++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYDKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   ++  +++D S     ++ FGA V +   +   K  ++IVG  E   ++  +S
Sbjct: 61  RVRYLRKCMSMLKIVDYSPQQDGKVFFGAWVEVENDDGVIK-RFRIVGYDEIFGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+GD  +V  P GE  + I  + +
Sbjct: 120 IDSPMARALLKKEVGDAATVITPSGEALWYINAIDY 155


>gi|53720171|ref|YP_109157.1| transcription elongation factor GreB [Burkholderia pseudomallei
           K96243]
 gi|53726019|ref|YP_103667.1| transcription elongation factor GreB [Burkholderia mallei ATCC
           23344]
 gi|67643934|ref|ZP_00442677.1| transcription elongation factor GreB [Burkholderia mallei GB8 horse
           4]
 gi|121600632|ref|YP_992161.1| transcription elongation factor GreB [Burkholderia mallei SAVP1]
 gi|124385438|ref|YP_001028606.1| transcription elongation factor GreB [Burkholderia mallei NCTC
           10229]
 gi|126440515|ref|YP_001059961.1| transcription elongation factor GreB [Burkholderia pseudomallei
           668]
 gi|126450620|ref|YP_001081495.1| transcription elongation factor GreB [Burkholderia mallei NCTC
           10247]
 gi|126454976|ref|YP_001067253.1| transcription elongation factor GreB [Burkholderia pseudomallei
           1106a]
 gi|166998289|ref|ZP_02264149.1| transcription elongation factor GreB [Burkholderia mallei PRL-20]
 gi|167720736|ref|ZP_02403972.1| transcription elongation factor GreB [Burkholderia pseudomallei
           DM98]
 gi|167816923|ref|ZP_02448603.1| transcription elongation factor GreB [Burkholderia pseudomallei 91]
 gi|167846828|ref|ZP_02472336.1| transcription elongation factor GreB [Burkholderia pseudomallei
           B7210]
 gi|167912070|ref|ZP_02499161.1| transcription elongation factor GreB [Burkholderia pseudomallei
           112]
 gi|167920044|ref|ZP_02507135.1| transcription elongation factor GreB [Burkholderia pseudomallei
           BCC215]
 gi|242316946|ref|ZP_04815962.1| transcription elongation factor GreB [Burkholderia pseudomallei
           1106b]
 gi|254175421|ref|ZP_04882081.1| transcription elongation factor GreB [Burkholderia mallei ATCC
           10399]
 gi|254191879|ref|ZP_04898382.1| transcription elongation factor GreB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254196029|ref|ZP_04902454.1| transcription elongation factor GreB [Burkholderia pseudomallei
           S13]
 gi|254202365|ref|ZP_04908728.1| transcription elongation factor GreB [Burkholderia mallei FMH]
 gi|254207699|ref|ZP_04914049.1| transcription elongation factor GreB [Burkholderia mallei JHU]
 gi|254298847|ref|ZP_04966297.1| transcription elongation factor GreB [Burkholderia pseudomallei
           406e]
 gi|254356401|ref|ZP_04972677.1| transcription elongation factor GreB [Burkholderia mallei
           2002721280]
 gi|52210585|emb|CAH36568.1| transcription elongation factor [Burkholderia pseudomallei K96243]
 gi|52429442|gb|AAU50035.1| transcription elongation factor GreB [Burkholderia mallei ATCC
           23344]
 gi|121229442|gb|ABM51960.1| transcription elongation factor GreB [Burkholderia mallei SAVP1]
 gi|124293458|gb|ABN02727.1| transcription elongation factor GreB [Burkholderia mallei NCTC
           10229]
 gi|126220008|gb|ABN83514.1| transcription elongation factor GreB [Burkholderia pseudomallei
           668]
 gi|126228618|gb|ABN92158.1| transcription elongation factor GreB [Burkholderia pseudomallei
           1106a]
 gi|126243490|gb|ABO06583.1| transcription elongation factor GreB [Burkholderia mallei NCTC
           10247]
 gi|147746612|gb|EDK53689.1| transcription elongation factor GreB [Burkholderia mallei FMH]
 gi|147751593|gb|EDK58660.1| transcription elongation factor GreB [Burkholderia mallei JHU]
 gi|148025398|gb|EDK83552.1| transcription elongation factor GreB [Burkholderia mallei
           2002721280]
 gi|157809034|gb|EDO86204.1| transcription elongation factor GreB [Burkholderia pseudomallei
           406e]
 gi|157939550|gb|EDO95220.1| transcription elongation factor GreB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696465|gb|EDP86435.1| transcription elongation factor GreB [Burkholderia mallei ATCC
           10399]
 gi|169652773|gb|EDS85466.1| transcription elongation factor GreB [Burkholderia pseudomallei
           S13]
 gi|238525403|gb|EEP88831.1| transcription elongation factor GreB [Burkholderia mallei GB8 horse
           4]
 gi|242140185|gb|EES26587.1| transcription elongation factor GreB [Burkholderia pseudomallei
           1106b]
 gi|243065364|gb|EES47550.1| transcription elongation factor GreB [Burkholderia mallei PRL-20]
          Length = 187

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 73/154 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL     E RP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLHLIDEARPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G++    IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQDGNEHTVTIVGVDEVDLDRGHVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL+   +GD +++  P G +  ++L V +
Sbjct: 148 SPVARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181


>gi|303230991|ref|ZP_07317734.1| transcription elongation factor GreA [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514373|gb|EFL56372.1| transcription elongation factor GreA [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 157

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 3/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D  +  +T++G  K++ EL + +   R  + + I  A  YGD+SEN+EY  AK  Q  
Sbjct: 1   MADVKETLLTAEGLKKLEDELAYYKSVRRIEVSQRIKTAIEYGDISENSEYDDAKNEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EG ++ELEN I  A++ID ST   D ++ G+ V++++    D+  Y IVG  EAD  + 
Sbjct: 61  IEGYISELENKINTAKIIDESTKG-DVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNN 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+ +A++GK  GD + V+ P G  T+++L + 
Sbjct: 120 RISNESPVGKAILGKRKGDEVEVSTPDGPVTFKVLAIQ 157


>gi|309794676|ref|ZP_07689098.1| transcription elongation factor GreB [Escherichia coli MS 145-7]
 gi|308121726|gb|EFO58988.1| transcription elongation factor GreB [Escherichia coli MS 145-7]
          Length = 170

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 13  MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 72

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 73  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 131

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ +  + ++
Sbjct: 132 IDSPMARALLKKEVGDLAVVNTPAGETSWYVNAIEYV 168


>gi|294011426|ref|YP_003544886.1| transcription elongation factor GreA [Sphingobium japonicum UT26S]
 gi|292674756|dbj|BAI96274.1| transcription elongation factor GreA [Sphingobium japonicum UT26S]
          Length = 158

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/156 (46%), Positives = 114/156 (73%), Gaps = 2/156 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K+P+   G+DK+ ++LR  +  ERP I+ AI EARA+GDLSENAEY AAKE Q   E  
Sbjct: 5   EKMPMLQMGYDKLNEQLRELKA-ERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEAT 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +A+LE+ ++RA++ID  T+SGD++ FGATV+L++++      YQIVG  EAD + G++S 
Sbjct: 64  IADLEDKLSRAQIIDPRTLSGDKVVFGATVTLLDEDDKPV-KYQIVGQAEADAKVGMISY 122

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SP+ RALIG+++G+ + V+ P G+K Y + ++ +I
Sbjct: 123 NSPLGRALIGRQIGEEVEVSVPSGDKFYLVDKIDFI 158


>gi|307730694|ref|YP_003907918.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
 gi|307585229|gb|ADN58627.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
          Length = 206

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 75/154 (48%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL      ERP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 46  KNYITPAGYRRMRDELLQLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 105

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G++    IVG  E D+  G VS  
Sbjct: 106 RFLTKRLDLAEVVDSSKQENVDQVFFGATVEYATEDGEEHTVTIVGIDEVDLDIGHVSWI 165

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+  ++GD +++  P G +  +IL V +
Sbjct: 166 SPIARALLKGKVGDTVTLYTPAGPQPIDILDVKY 199


>gi|300718779|ref|YP_003743582.1| transcription elongation factor [Erwinia billingiae Eb661]
 gi|299064615|emb|CAX61735.1| Transcription elongation factor [Erwinia billingiae Eb661]
          Length = 159

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+DK++QEL +  +E+RP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTQLITREGYDKLKQELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + +  +++ S     ++ FGA V +       K  ++I G  E   ++  +S
Sbjct: 61  RVRYLTKCLEQLRIVEYSPQQDGKVFFGAWVEIENDAGDVK-RFRIAGYDEIFGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  V  P G+  + ++ + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVPTPVGDAHWYVVAIDYV 156


>gi|255038560|ref|YP_003089181.1| transcription elongation factor GreA [Dyadobacter fermentans DSM
           18053]
 gi|254951316|gb|ACT96016.1| transcription elongation factor GreA [Dyadobacter fermentans DSM
           18053]
          Length = 160

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 98/155 (63%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T +G +K++ EL   + + R  I + I+EAR  GDLSENAEY AAK+ Q ++E
Sbjct: 1   MAKISYYTEEGLNKLRNELNEMKTKGRTEIARQIAEARDKGDLSENAEYDAAKDAQGMHE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+LE I++ A VID S+M   +++  + V +  + +G +  Y +V ++EAD+++G +
Sbjct: 61  MKIAKLEEILSNARVIDESSMDTSQVSVLSKVKIKNRKNGMEVTYTLVSEEEADLKAGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SPI + L+GK++G+   +  P G   +E+L +
Sbjct: 121 SVGSPIGKGLLGKKVGETTEIKVPAGMMEFEVLDI 155


>gi|184155762|ref|YP_001844102.1| transcription elongation factor GreA [Lactobacillus fermentum IFO
           3956]
 gi|227515646|ref|ZP_03945695.1| elongation factor GreA [Lactobacillus fermentum ATCC 14931]
 gi|260663522|ref|ZP_05864412.1| transcription elongation factor GreA [Lactobacillus fermentum
           28-3-CHN]
 gi|238692987|sp|B2GD90|GREA_LACF3 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|183227106|dbj|BAG27622.1| transcription elongation factor GreA [Lactobacillus fermentum IFO
           3956]
 gi|227086076|gb|EEI21388.1| elongation factor GreA [Lactobacillus fermentum ATCC 14931]
 gi|260552063|gb|EEX25116.1| transcription elongation factor GreA [Lactobacillus fermentum
           28-3-CHN]
          Length = 158

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/158 (36%), Positives = 97/158 (61%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T+ G  K++QEL   +   RP +I  I  AR+YGDLSEN+EY++AK+ Q  
Sbjct: 1   MAEEKSFPMTADGKAKLEQELEDLRLVRRPEVINRIKIARSYGDLSENSEYESAKDEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR++++E ++  A +ID   ++ D ++ G  ++  E    + ++Y IVG+ E+D  SG
Sbjct: 61  VEGRISQIETMLQYAVIIDNEDVAADEVSMGREITFQELPDEEPESYTIVGESESDPLSG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+A+ L+G ++GD + +  P G    +IL V 
Sbjct: 121 KISNESPMAKGLLGHKVGDTVEIEIPNGSMKVKILSVK 158


>gi|282881506|ref|ZP_06290176.1| putative transcription elongation factor GreA [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304617|gb|EFA96707.1| putative transcription elongation factor GreA [Prevotella
           timonensis CRIS 5C-B1]
          Length = 154

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 89/152 (58%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             ++ +G+DK+  EL+  +  E PR+  AI+EAR  GDLSEN EY AAK  Q     R+ 
Sbjct: 2   EYMSQEGYDKLVAELKQLETIELPRVRDAIAEARDKGDLSENFEYHAAKREQGRLLSRIR 61

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
             + ++  A VID S +S D++   + V++    +  K  Y+IV   EA+++ G +SI S
Sbjct: 62  FKQKVLEFARVIDTSRLSADKVGLLSKVTITNLGNKAKMTYRIVSAHEANMREGKISIHS 121

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA+AL+ K+ GD ++V  P G  T  I +V 
Sbjct: 122 PIAQALLDKKQGDEVTVRVPAGTITLHIDEVE 153


>gi|311031568|ref|ZP_07709658.1| transcription elongation factor GreA [Bacillus sp. m3-13]
          Length = 157

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 3/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T  G DK+ QEL   +   R  +++ I  AR++GDLSEN+EY +AKE Q  
Sbjct: 1   MAQEKVYPMTQAGKDKLVQELENLKSVRRKEVVERIKIARSFGDLSENSEYDSAKEEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  LE ++  A++I     +      G TV+ VE   G+++ Y IVG  EAD   G
Sbjct: 61  VEGRITLLEQMVRNAKIIQEDKDTDAVG-LGKTVTFVELPDGEEETYTIVGSAEADPFEG 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+  +L+GK + D +++  PGGE   +I+ V 
Sbjct: 120 NISNESPMGSSLMGKRVNDEVTIQTPGGEMNVKIVSVK 157


>gi|29347975|ref|NP_811478.1| transcription elongation factor greA [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29339877|gb|AAO77672.1| transcription elongation factor greA [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 154

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/150 (39%), Positives = 95/150 (63%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ K+  EL+  +  ERP+I  AI+EAR  GDLSENAEY AAKE Q + E R+ +
Sbjct: 3   YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ +I  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 63  LKTVIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+GK++GDI  +  P G+   E++ +
Sbjct: 123 IAQGLLGKKVGDIAEITVPQGKIALEVVNI 152


>gi|307295447|ref|ZP_07575283.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum
           L-1]
 gi|306878486|gb|EFN09706.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum
           L-1]
          Length = 158

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/156 (47%), Positives = 114/156 (73%), Gaps = 2/156 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K+P+   G+DK+  +LR  +  ERP I+ AI EARA+GDLSENAEY AAKE Q   E  
Sbjct: 5   EKMPMLQMGYDKLNAQLRELKA-ERPLIVDAIEEARAHGDLSENAEYHAAKERQGQVEAT 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +A+LE+ ++RA++ID +T+SGD+I FGATV+L++++      YQIVG  EAD + G++S 
Sbjct: 64  IADLEDKLSRAQIIDPTTLSGDKIVFGATVTLLDEDEKPV-KYQIVGQAEADAKVGMISY 122

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SP+ RALIG+++G+ + V+ P G+K Y + ++ +I
Sbjct: 123 NSPLGRALIGRQIGEEVEVSVPSGDKFYLVDKIDFI 158


>gi|24053876|gb|AAN44886.1| transcription elongation factor and transcript cleavage factor
           [Shigella flexneri 2a str. 301]
 gi|30043573|gb|AAP19293.1| transcription elongation factor and transcript cleavage factor
           [Shigella flexneri 2a str. 2457T]
          Length = 170

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 13  MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 72

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 73  RVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 131

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE  + +  + ++
Sbjct: 132 IDSPMARALLKKEVGDLAVVNTPAGEANWYVNAIEYV 168


>gi|293393396|ref|ZP_06637708.1| transcription elongation factor GreB [Serratia odorifera DSM 4582]
 gi|291424133|gb|EFE97350.1| transcription elongation factor GreB [Serratia odorifera DSM 4582]
          Length = 157

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+DK++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MRTQLITREGYDKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + + +++D S     ++ FGA V +   +   K  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCLEQLKIVDYSPQQEGKVFFGAWVEVENDDGDLK-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ K++GD   VN P GE  + + Q+ ++
Sbjct: 120 IDSPMARALLKKQVGDTAMVNTPAGEALWYVNQIEYV 156


>gi|15640654|ref|NP_230283.1| transcription elongation factor GreA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121730110|ref|ZP_01682511.1| transcription elongation factor GreA [Vibrio cholerae V52]
 gi|147675665|ref|YP_001216128.1| transcription elongation factor GreA [Vibrio cholerae O395]
 gi|153217134|ref|ZP_01950898.1| transcription elongation factor GreA [Vibrio cholerae 1587]
 gi|153801763|ref|ZP_01956349.1| transcription elongation factor GreA [Vibrio cholerae MZO-3]
 gi|153823554|ref|ZP_01976221.1| transcription elongation factor GreA [Vibrio cholerae B33]
 gi|153827690|ref|ZP_01980357.1| transcription elongation factor GreA [Vibrio cholerae MZO-2]
 gi|153830955|ref|ZP_01983622.1| transcription elongation factor GreA [Vibrio cholerae 623-39]
 gi|227080815|ref|YP_002809366.1| transcription elongation factor GreA [Vibrio cholerae M66-2]
 gi|229505744|ref|ZP_04395254.1| transcription elongation factor GreA [Vibrio cholerae BX 330286]
 gi|229509223|ref|ZP_04398708.1| transcription elongation factor GreA [Vibrio cholerae B33]
 gi|229512896|ref|ZP_04402363.1| transcription elongation factor GreA [Vibrio cholerae TMA 21]
 gi|229519568|ref|ZP_04409011.1| transcription elongation factor GreA [Vibrio cholerae RC9]
 gi|229520925|ref|ZP_04410347.1| transcription elongation factor GreA [Vibrio cholerae TM 11079-80]
 gi|229530439|ref|ZP_04419827.1| transcription elongation factor GreA [Vibrio cholerae 12129(1)]
 gi|229608855|ref|YP_002879503.1| transcription elongation factor GreA [Vibrio cholerae MJ-1236]
 gi|254292200|ref|ZP_04962968.1| transcription elongation factor GreA [Vibrio cholerae AM-19226]
 gi|297580760|ref|ZP_06942686.1| transcription elongation factor GreA [Vibrio cholerae RC385]
 gi|298500750|ref|ZP_07010553.1| transcription elongation factor GreA [Vibrio cholerae MAK 757]
 gi|9655069|gb|AAF93800.1| transcription elongation factor GreA [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121628145|gb|EAX60677.1| transcription elongation factor GreA [Vibrio cholerae V52]
 gi|124113827|gb|EAY32647.1| transcription elongation factor GreA [Vibrio cholerae 1587]
 gi|124122728|gb|EAY41471.1| transcription elongation factor GreA [Vibrio cholerae MZO-3]
 gi|126518923|gb|EAZ76146.1| transcription elongation factor GreA [Vibrio cholerae B33]
 gi|146317548|gb|ABQ22087.1| transcription elongation factor GreA [Vibrio cholerae O395]
 gi|148873568|gb|EDL71703.1| transcription elongation factor GreA [Vibrio cholerae 623-39]
 gi|149737832|gb|EDM52737.1| transcription elongation factor GreA [Vibrio cholerae MZO-2]
 gi|150421881|gb|EDN13860.1| transcription elongation factor GreA [Vibrio cholerae AM-19226]
 gi|227008703|gb|ACP04915.1| transcription elongation factor GreA [Vibrio cholerae M66-2]
 gi|227012459|gb|ACP08669.1| transcription elongation factor GreA [Vibrio cholerae O395]
 gi|229332212|gb|EEN97700.1| transcription elongation factor GreA [Vibrio cholerae 12129(1)]
 gi|229342158|gb|EEO07154.1| transcription elongation factor GreA [Vibrio cholerae TM 11079-80]
 gi|229344257|gb|EEO09232.1| transcription elongation factor GreA [Vibrio cholerae RC9]
 gi|229350145|gb|EEO15098.1| transcription elongation factor GreA [Vibrio cholerae TMA 21]
 gi|229353795|gb|EEO18731.1| transcription elongation factor GreA [Vibrio cholerae B33]
 gi|229357967|gb|EEO22884.1| transcription elongation factor GreA [Vibrio cholerae BX 330286]
 gi|229371510|gb|ACQ61933.1| transcription elongation factor GreA [Vibrio cholerae MJ-1236]
 gi|297535176|gb|EFH74011.1| transcription elongation factor GreA [Vibrio cholerae RC385]
 gi|297540531|gb|EFH76589.1| transcription elongation factor GreA [Vibrio cholerae MAK 757]
          Length = 158

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/159 (46%), Positives = 117/159 (73%), Gaps = 2/159 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M++K+P+T++G +K+ +E   R  + RP+I +AI+EAR  GDL ENAEY AA+E Q + E
Sbjct: 1   MMEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICE 59

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
            ++ ++E  ++ A+VID++ M    ++ FGATV++++ NS ++K YQIVGD EAD++SG 
Sbjct: 60  AQIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGR 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S++SPIAR LIGK  GD +S+  PGG K +EI +V ++
Sbjct: 120 ISVNSPIARGLIGKFEGDEVSIATPGGNKVFEIDRVEYL 158


>gi|91787228|ref|YP_548180.1| GreA/GreB family elongation factor [Polaromonas sp. JS666]
 gi|91696453|gb|ABE43282.1| GreA/GreB family elongation factor [Polaromonas sp. JS666]
          Length = 190

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 84/155 (54%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+++++ EL      ERP++++ +  A + GD SEN +Y   K+     + R+
Sbjct: 26  KNYITPVGYERLRAELLDLIDNERPKVVEIVHWAASNGDRSENGDYHYGKKRLREIDRRI 85

Query: 64  AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AE+ + S     D++ FGATV+ V+     ++   I+G  EA+   G +S 
Sbjct: 86  RFLTQRLEIAEISNPSIHHGSDQVFFGATVTYVDDRGE-ERTVTILGIDEANSALGQISW 144

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP ARAL+   +GD +++  P G +  E+L+V +
Sbjct: 145 ISPAARALLKSRVGDEVNLVTPQGLQVLEVLKVDY 179


>gi|329901876|ref|ZP_08272963.1| Transcription elongation factor GreB [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548968|gb|EGF33585.1| Transcription elongation factor GreB [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 187

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 77/154 (50%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T  GF ++++EL      +RP ++  +  A + GD SEN +Y   K      + R+
Sbjct: 28  RNYMTPAGFQRMREELLHLIDVDRPEVVHIVHWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D +   G+   F       E ++G++    IVG  E D   G +S  
Sbjct: 88  RFLTKRLDVAEVVDPTIHHGNEQVFFGATVRYENSAGEQHVITIVGIDELDPLHGKISWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARA+    +GD I++  P G +  +IL+V +
Sbjct: 148 SPVARAITKSRVGDTITLKTPSGVEELQILEVTY 181


>gi|312879693|ref|ZP_07739493.1| transcription elongation factor GreA [Aminomonas paucivorans DSM
           12260]
 gi|310782984|gb|EFQ23382.1| transcription elongation factor GreA [Aminomonas paucivorans DSM
           12260]
          Length = 153

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 94/150 (62%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G++K++QEL   + + R  I   + EARA+GDLSENAEY AAKE Q   E R+  L
Sbjct: 2   MTREGYEKLKQELISLRGDGRSEIAAKLEEARAFGDLSENAEYHAAKEEQEKLESRILWL 61

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E  +++  ++++  +    ++ G TVSL + ++  +  Y +VG +EAD ++  +S  SP+
Sbjct: 62  EYQLSKTRIVEVGDLDTSSVSLGTTVSLRDLDAQTQYTYTLVGSEEADPKTNRISSQSPV 121

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A++GK +G+ + V  P G +  ++L++ 
Sbjct: 122 GKAILGKTVGEEVMVRVPKGVRHLKVLEIR 151


>gi|167837497|ref|ZP_02464380.1| transcription elongation factor GreB [Burkholderia thailandensis
           MSMB43]
          Length = 187

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 73/154 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL     EERP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLHLIDEERPDVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G +    IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQDGTEHTVTIVGVDEVDLDRGHVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL+   +GD +++  P G +  ++L V +
Sbjct: 148 SPVARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181


>gi|323527030|ref|YP_004229183.1| transcription elongation factor GreB [Burkholderia sp. CCGE1001]
 gi|323384032|gb|ADX56123.1| transcription elongation factor GreB [Burkholderia sp. CCGE1001]
          Length = 189

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 76/154 (49%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL     EERP +++ +S A + GD SEN +Y   K      + R+
Sbjct: 29  KNYITPAGYRRMRDELLHLIDEERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G++    IVG  E D+  G VS  
Sbjct: 89  RFLTKRLDLAEVVDSSKQENVDQVFFGATVEYATEDGEEHTVTIVGIDEVDLDVGHVSWI 148

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+  ++GD +++  P G +  +IL V +
Sbjct: 149 SPIARALLKAKVGDTVTLYTPAGPQPIDILDVKY 182


>gi|256847484|ref|ZP_05552930.1| transcription elongation factor GreB [Lactobacillus coleohominis
           101-4-CHN]
 gi|256716148|gb|EEU31123.1| transcription elongation factor GreB [Lactobacillus coleohominis
           101-4-CHN]
          Length = 158

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 104/158 (65%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D+   P+T++G +K++QEL   + + RP +IK I  AR+YGDLSEN+EY++AK+ Q  
Sbjct: 1   MADEKTFPMTAEGKEKLEQELEDLRLKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR++++EN++  A +ID   ++ D ++ G +V+  E    + + Y IVG+ E+D  SG
Sbjct: 61  VEGRISQIENMLQYAVIIDNDDVAADEVSMGRSVTFKELPDEEPETYTIVGESESDPLSG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+A+ L+G ++G+ + ++ P G    EI++V 
Sbjct: 121 KISNESPMAKGLLGHKVGEKVDIDIPSGIMHVEIIEVK 158


>gi|254038573|ref|ZP_04872629.1| transcription elongation factor greB [Escherichia sp. 1_1_43]
 gi|300815398|ref|ZP_07095623.1| transcription elongation factor GreB [Escherichia coli MS 107-1]
 gi|300946852|ref|ZP_07161092.1| transcription elongation factor GreB [Escherichia coli MS 116-1]
 gi|300956734|ref|ZP_07169005.1| transcription elongation factor GreB [Escherichia coli MS 175-1]
 gi|301645845|ref|ZP_07245760.1| transcription elongation factor GreB [Escherichia coli MS 146-1]
 gi|332281953|ref|ZP_08394366.1| transcription elongation factor and transcript cleavage [Shigella
           sp. D9]
 gi|606340|gb|AAA58203.1| ORF_o170 [Escherichia coli str. K-12 substr. MG1655]
 gi|226839079|gb|EEH71102.1| transcription elongation factor greB [Escherichia sp. 1_1_43]
 gi|300316490|gb|EFJ66274.1| transcription elongation factor GreB [Escherichia coli MS 175-1]
 gi|300453461|gb|EFK17081.1| transcription elongation factor GreB [Escherichia coli MS 116-1]
 gi|300532290|gb|EFK53352.1| transcription elongation factor GreB [Escherichia coli MS 107-1]
 gi|301075923|gb|EFK90729.1| transcription elongation factor GreB [Escherichia coli MS 146-1]
 gi|324018723|gb|EGB87942.1| transcription elongation factor GreB [Escherichia coli MS 117-3]
 gi|332104305|gb|EGJ07651.1| transcription elongation factor and transcript cleavage [Shigella
           sp. D9]
          Length = 170

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 13  MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 72

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 73  RVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 131

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ +  + ++
Sbjct: 132 IDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 168


>gi|188535334|ref|YP_001909131.1| transcription elongation factor GreB [Erwinia tasmaniensis Et1/99]
 gi|188030376|emb|CAO98267.1| Transcription elongation factor GreB [Erwinia tasmaniensis Et1/99]
          Length = 159

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++ ++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTKLITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + +  ++D S     ++ FGA V +   +   K  ++IVG  E   ++  +S
Sbjct: 61  RVRYLTKCLEQLRIVDYSPQQEGKVFFGAWVEVENDDGDIK-RFRIVGYDEIFGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD  +V  P GE  + +  + +I
Sbjct: 120 IDSPMARALLKKEVGDAATVLTPAGEALWYVNDIRYI 156


>gi|90581398|ref|ZP_01237193.1| transcription elongation factor GreB [Vibrio angustum S14]
 gi|90437375|gb|EAS62571.1| transcription elongation factor GreB [Vibrio angustum S14]
          Length = 160

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K+++EL +  +E+RP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MRTNLVTREGYNKLKKELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +VID S     ++ FGA V +  +    K  ++IVG  E   ++  +S
Sbjct: 61  RVRFLRKRLDVLKVIDYSPQQDGKVFFGAWVEIENEAGETK-TFRIVGPDEIYGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+ D I V  P G+K + I ++ +
Sbjct: 120 IDSPMARALLSKEVDDDIVVTTPLGKKEWFINEISY 155


>gi|254362550|ref|ZP_04978651.1| transcription elongation factor [Mannheimia haemolytica PHL213]
 gi|261493833|ref|ZP_05990347.1| transcription elongation factor [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261495058|ref|ZP_05991525.1| transcription elongation factor [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|153094151|gb|EDN75047.1| transcription elongation factor [Mannheimia haemolytica PHL213]
 gi|261309300|gb|EEY10536.1| transcription elongation factor [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310536|gb|EEY11725.1| transcription elongation factor [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 160

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRSGWQALDQELKFLWREERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V L  +    K+ Y+IVG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEEGEAKQ-YRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D I V  P G+    I ++ +
Sbjct: 120 SIDSPVARALIGKQVDDEIRVETPLGKVLLYINKIWY 156


>gi|295396925|ref|ZP_06807049.1| transcription elongation factor GreA [Aerococcus viridans ATCC
           11563]
 gi|294974859|gb|EFG50562.1| transcription elongation factor GreA [Aerococcus viridans ATCC
           11563]
          Length = 159

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/159 (39%), Positives = 101/159 (63%), Gaps = 1/159 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +++  +T +G +KIQQ+L   +  +R  I++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEEVYPMTQEGLEKIQQDLDELKIVKRKEIVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG++ +LE ++  A++ID + +    ++ G  V+ +E   GD++ Y IVG  EAD   G 
Sbjct: 61  EGQIQKLEKMVRYAKIIDPNEIDEGIVSLGRKVTFIELPDGDEEVYSIVGRAEADPLDGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S  SPIA+ALIGK + D +++  PGG+   +I  V  I
Sbjct: 121 ISNESPIAQALIGKGVNDEVTIETPGGDMVVKITSVDAI 159


>gi|257464600|ref|ZP_05628971.1| transcription elongation factor GreB [Actinobacillus minor 202]
 gi|257450260|gb|EEV24303.1| transcription elongation factor GreB [Actinobacillus minor 202]
          Length = 162

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRAGWQALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V L  +       Y+IVG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEEGE-VAQYRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK   D I+V  P G+  + I ++ +
Sbjct: 120 SIDSPVARALIGKMQDDEITVETPVGKVMWFINKIWY 156


>gi|308068951|ref|YP_003870556.1| transcription elongation factor greA (transcript cleavage factor
           greA) [Paenibacillus polymyxa E681]
 gi|305858230|gb|ADM70018.1| Transcription elongation factor greA (Transcript cleavage factor
           greA) [Paenibacillus polymyxa E681]
          Length = 159

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 94/154 (61%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +++ +T +G  K++ EL+  +  +R  + + +  A +YGDL EN+EY +AK+ Q   E R
Sbjct: 4   EEVLLTKEGLAKLEDELKELKTVKRKELAERLKLAISYGDLKENSEYHSAKDDQAFMETR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  LE ++T+A V+D S +    ++ G+TV L +    +K  Y+IV   EADV    +S 
Sbjct: 64  ILILEKMLTKARVVDESNLDLRTVSIGSTVILNDIEFSEKMEYKIVSPAEADVLDNKISY 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +AL+GKE+G II V+AP     YE+L++ 
Sbjct: 124 ESPLGKALLGKEVGSIIHVDAPMAVIKYELLEIK 157


>gi|295677338|ref|YP_003605862.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
 gi|295437181|gb|ADG16351.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
          Length = 189

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 74/154 (48%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL      ERP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 29  KNYMTPAGHRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G++    IVG  E D+  G VS  
Sbjct: 89  RFLTKRLDLAEVVDSSRQENVDQVFFGATVDYATEDGEEHKVTIVGVDEVDLDIGHVSWI 148

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+  ++GD +++  P G +  +IL V +
Sbjct: 149 SPIARALLKAKVGDTVTLFTPAGPQPIDILDVKY 182


>gi|303228842|ref|ZP_07315655.1| transcription elongation factor GreA [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516462|gb|EFL58391.1| transcription elongation factor GreA [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 157

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 92/158 (58%), Gaps = 3/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D  +  +T++G  K++ EL + +   R  + + I  A  YGD+SEN+EY  AK  Q  
Sbjct: 1   MADVKETLLTAEGLKKLEDELAYYKSVRRIEVSQRIKTAIEYGDISENSEYDDAKNEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EG ++ELEN I  A++ID S    D ++ G+ V++++    D+  Y IVG  EAD  + 
Sbjct: 61  IEGYISELENKINTAKIIDESIKG-DVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNN 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+ +A++GK  GD + V+ P G  T+++L + 
Sbjct: 120 RISNESPVGKAILGKRKGDEVEVSTPDGPVTFKVLAIQ 157


>gi|161525566|ref|YP_001580578.1| transcription elongation factor GreB [Burkholderia multivorans ATCC
           17616]
 gi|189349706|ref|YP_001945334.1| transcription elongation factor GreB [Burkholderia multivorans ATCC
           17616]
 gi|221201206|ref|ZP_03574246.1| transcription elongation factor GreB [Burkholderia multivorans
           CGD2M]
 gi|221206340|ref|ZP_03579353.1| transcription elongation factor GreB [Burkholderia multivorans
           CGD2]
 gi|221213620|ref|ZP_03586594.1| transcription elongation factor GreB [Burkholderia multivorans
           CGD1]
 gi|160342995|gb|ABX16081.1| transcription elongation factor GreB [Burkholderia multivorans ATCC
           17616]
 gi|189333728|dbj|BAG42798.1| transcription elongation factor [Burkholderia multivorans ATCC
           17616]
 gi|221166409|gb|EED98881.1| transcription elongation factor GreB [Burkholderia multivorans
           CGD1]
 gi|221173649|gb|EEE06083.1| transcription elongation factor GreB [Burkholderia multivorans
           CGD2]
 gi|221179056|gb|EEE11463.1| transcription elongation factor GreB [Burkholderia multivorans
           CGD2M]
          Length = 187

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 73/154 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL      ERP +++ +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLKDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G++    IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQENVDQVFFGATVDYATPDGEEHTITIVGIDEVDLDRGCVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARALI   +GD +++  P G +  ++L V +
Sbjct: 148 SPVARALIKARIGDTVTLMTPAGPQPIDVLDVRY 181


>gi|269792851|ref|YP_003317755.1| transcription elongation factor GreA [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100486|gb|ACZ19473.1| transcription elongation factor GreA [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 164

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/153 (36%), Positives = 97/153 (63%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +++ +T +G++K++QEL   + + R  I   + EARA+GDLSENAEY AAKE Q   E R
Sbjct: 9   EQVIMTREGYEKLKQELASLRGDGRSEIASKLEEARAFGDLSENAEYHAAKEEQEKLESR 68

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  LE  +++A+V++ S +    ++ GATV L + ++G+   Y +VG +EAD ++  +S 
Sbjct: 69  IMWLEYQLSKAKVVESSDIDTSTVSLGATVQLRDLDTGNTYTYVLVGSEEADPKANRISA 128

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SP+ +A+IG+  G+ + V  P G +   I ++
Sbjct: 129 QSPVGKAIIGRAEGEEVIVRVPKGTRHLRIERI 161


>gi|148381460|ref|YP_001256001.1| transcription elongation factor GreA [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933740|ref|YP_001385835.1| transcription elongation factor GreA [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937864|ref|YP_001389242.1| transcription elongation factor GreA [Clostridium botulinum A str.
           Hall]
 gi|229485762|sp|A7FZA6|GREA_CLOB1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|229485764|sp|A5I7P5|GREA_CLOBH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|148290944|emb|CAL85080.1| transcription elongation factor [Clostridium botulinum A str. ATCC
           3502]
 gi|152929784|gb|ABS35284.1| transcription elongation factor GreA [Clostridium botulinum A str.
           ATCC 19397]
 gi|152933778|gb|ABS39277.1| transcription elongation factor GreA [Clostridium botulinum A str.
           Hall]
          Length = 160

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 92/157 (58%), Gaps = 2/157 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +G  K+++EL + +  +R  I + I  A ++GDLSEN+EY  AK  Q  
Sbjct: 1   MSEAKKYVMTYEGVKKLEEELEFLKTVKRKEITEKIKVALSFGDLSENSEYDEAKNEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN++  A ++D + +  D ++ G+ V + +    ++  Y IVG  EAD  + 
Sbjct: 61  VEGRIIQLENMLKNASIVDENEVPKDVVSVGSIVKVKDYEFDEEVEYIIVGSAEADPMNN 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+   LIGK+ GDII V  P G   YEIL+V
Sbjct: 121 KISNESPVGHGLIGKKAGDIIEVAVPDGVSKYEILEV 157


>gi|89076063|ref|ZP_01162423.1| transcription elongation factor GreB [Photobacterium sp. SKA34]
 gi|89048215|gb|EAR53797.1| transcription elongation factor GreB [Photobacterium sp. SKA34]
          Length = 160

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K+++EL +  +E+RP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MRTNLVTREGYNKLKKELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +VID S     +I FGA V +  +    K  ++IVG  E   ++  +S
Sbjct: 61  RVRFLRKRLDVLKVIDYSPQQDGKIFFGAWVEIENEAGETK-TFRIVGPDEIYGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+ D I V  P G+K + I ++ +
Sbjct: 120 IDSPMARALLSKEVDDDIVVTTPLGKKEWFINEIRY 155


>gi|134295030|ref|YP_001118765.1| transcription elongation factor GreB [Burkholderia vietnamiensis
           G4]
 gi|134138187|gb|ABO53930.1| transcription elongation factor GreB [Burkholderia vietnamiensis
           G4]
          Length = 187

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 73/154 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL      ERP +++ +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G+     IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQENVDQVFFGATVDYATPDGEDHTVTIVGIDEVDLDRGCVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARALI  ++GD +++  P G +  ++L V +
Sbjct: 148 SPIARALIKAKIGDTVTLMTPAGPQPIDVLDVRY 181


>gi|120556642|ref|YP_960993.1| transcription elongation factor GreB [Marinobacter aquaeolei VT8]
 gi|120326491|gb|ABM20806.1| transcription elongation factor GreB [Marinobacter aquaeolei VT8]
          Length = 171

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 86/152 (56%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G   ++ EL++  + +RP + +A+ EA A GD SENAEY   K+     + R+  
Sbjct: 14  YITPEGEQALRDELQFLWKVKRPEVTQAVREAAALGDRSENAEYIYGKKQLREIDRRVRF 73

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +    V+D       R+ F A V++ +++   ++ Y+IVG  E D++ G +SI+SP
Sbjct: 74  LSKRLDEVSVVDRLPEDRSRVFFAAWVTIEDEDGS-EQEYRIVGADEFDLEKGYLSINSP 132

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +ARALIGK L D +SV  P G K   I  + +
Sbjct: 133 LARALIGKHLDDEVSVRTPEGWKQVVITDIRY 164


>gi|170016629|ref|YP_001727548.1| transcription elongation factor [Leuconostoc citreum KM20]
 gi|238688945|sp|B1MX52|GREA_LEUCK RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|169803486|gb|ACA82104.1| Transcription elongation factor [Leuconostoc citreum KM20]
          Length = 160

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T++G DK+Q EL      +RP I   I  AR+YGDLSEN+EYQ+AK+ Q  
Sbjct: 1   MSEEKVFPMTAEGRDKLQAELEDLITRQRPEITNRIQIARSYGDLSENSEYQSAKDEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  L+ +I  AE+ID +  + D ++ G TV+  E    + + Y IVG  E+D  +G
Sbjct: 61  VEGRILTLKKMIENAEIIDPNATAADVVSLGKTVTFKELPDEEPETYAIVGSTESDPLAG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
            +S  S +A AL+ K++GD +SV  P GE    EIL+V 
Sbjct: 121 KISNESAMAVALLDKKVGDKVSVPLPSGESIDVEILKVE 159


>gi|90416385|ref|ZP_01224317.1| transcription elongation factor GreB [marine gamma proteobacterium
           HTCC2207]
 gi|90332110|gb|EAS47324.1| transcription elongation factor GreB [marine gamma proteobacterium
           HTCC2207]
          Length = 165

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 82/152 (53%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G  K++ E+    + ERP++   + EA   GD SEN +Y   K      + R+  
Sbjct: 14  YITPEGASKMRAEVHQLWKVERPKVTHIVHEAAKNGDRSENGDYIYGKRRLREIDSRVRY 73

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   I  A +++       ++ F A V++ +++SG++  Y++VG  E D     +SI SP
Sbjct: 74  LTKRIEDATIVEDKPRDPSKVFFAAWVTVEDEDSGEEHIYRLVGSDEIDSALNWISIDSP 133

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +ARAL+GK + D ++V  P G++   I ++ +
Sbjct: 134 MARALVGKSIDDEVNVKTPAGDRCLIITEISY 165


>gi|91212881|ref|YP_542867.1| transcription elongation factor GreB [Escherichia coli UTI89]
 gi|227883540|ref|ZP_04001345.1| transcription elongation factor GreB [Escherichia coli 83972]
 gi|237703136|ref|ZP_04533617.1| transcription elongation factor and transcript cleavage
           [Escherichia sp. 3_2_53FAA]
 gi|300822797|ref|ZP_07102933.1| transcription elongation factor GreB [Escherichia coli MS 119-7]
 gi|300898907|ref|ZP_07117206.1| transcription elongation factor GreB [Escherichia coli MS 198-1]
 gi|300926905|ref|ZP_07142670.1| transcription elongation factor GreB [Escherichia coli MS 182-1]
 gi|300937297|ref|ZP_07152138.1| transcription elongation factor GreB [Escherichia coli MS 21-1]
 gi|300985400|ref|ZP_07177423.1| transcription elongation factor GreB [Escherichia coli MS 45-1]
 gi|301019577|ref|ZP_07183737.1| transcription elongation factor GreB [Escherichia coli MS 69-1]
 gi|301329711|ref|ZP_07222460.1| transcription elongation factor GreB [Escherichia coli MS 78-1]
 gi|331649204|ref|ZP_08350290.1| transcription elongation factor GreB [Escherichia coli M605]
 gi|331654983|ref|ZP_08355982.1| transcription elongation factor GreB [Escherichia coli M718]
 gi|331674894|ref|ZP_08375651.1| transcription elongation factor GreB [Escherichia coli TA280]
 gi|331679470|ref|ZP_08380140.1| transcription elongation factor GreB [Escherichia coli H591]
 gi|12518036|gb|AAG58507.1|AE005563_1 transcription elongation factor and transcript cleavage
           [Escherichia coli O157:H7 str. EDL933]
 gi|26110436|gb|AAN82621.1|AE016768_39 Transcription elongation factor greB [Escherichia coli CFT073]
 gi|13363722|dbj|BAB37671.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           Sakai]
 gi|91074455|gb|ABE09336.1| transcription elongation factor and transcript cleavage
           [Escherichia coli UTI89]
 gi|209756508|gb|ACI76566.1| transcription elongation factor GreB [Escherichia coli]
 gi|209756510|gb|ACI76567.1| transcription elongation factor GreB [Escherichia coli]
 gi|209756512|gb|ACI76568.1| transcription elongation factor GreB [Escherichia coli]
 gi|209756514|gb|ACI76569.1| transcription elongation factor GreB [Escherichia coli]
 gi|209756516|gb|ACI76570.1| transcription elongation factor GreB [Escherichia coli]
 gi|226902400|gb|EEH88659.1| transcription elongation factor and transcript cleavage
           [Escherichia sp. 3_2_53FAA]
 gi|227839419|gb|EEJ49885.1| transcription elongation factor GreB [Escherichia coli 83972]
 gi|300357446|gb|EFJ73316.1| transcription elongation factor GreB [Escherichia coli MS 198-1]
 gi|300399165|gb|EFJ82703.1| transcription elongation factor GreB [Escherichia coli MS 69-1]
 gi|300408083|gb|EFJ91621.1| transcription elongation factor GreB [Escherichia coli MS 45-1]
 gi|300417088|gb|EFK00399.1| transcription elongation factor GreB [Escherichia coli MS 182-1]
 gi|300457620|gb|EFK21113.1| transcription elongation factor GreB [Escherichia coli MS 21-1]
 gi|300524563|gb|EFK45632.1| transcription elongation factor GreB [Escherichia coli MS 119-7]
 gi|300844223|gb|EFK71983.1| transcription elongation factor GreB [Escherichia coli MS 78-1]
 gi|315291670|gb|EFU51026.1| transcription elongation factor GreB [Escherichia coli MS 153-1]
 gi|315295897|gb|EFU55210.1| transcription elongation factor GreB [Escherichia coli MS 16-3]
 gi|325498948|gb|EGC96807.1| transcription elongation factor GreB [Escherichia fergusonii
           ECD227]
 gi|331041702|gb|EGI13846.1| transcription elongation factor GreB [Escherichia coli M605]
 gi|331046998|gb|EGI19076.1| transcription elongation factor GreB [Escherichia coli M718]
 gi|331067803|gb|EGI39201.1| transcription elongation factor GreB [Escherichia coli TA280]
 gi|331072642|gb|EGI43967.1| transcription elongation factor GreB [Escherichia coli H591]
          Length = 170

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 13  MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 72

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 73  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 131

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ +  + ++
Sbjct: 132 IDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 168


>gi|167854513|ref|ZP_02477294.1| transcription elongation factor GreB [Haemophilus parasuis 29755]
 gi|167854268|gb|EDS25501.1| transcription elongation factor GreB [Haemophilus parasuis 29755]
          Length = 162

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + QEL++  +EERP++ +A+SEA A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRSGWQALDQELKYLWKEERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V L  +    K+ Y+IVG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYHPSQEGKVFFGAWVELENEEGEIKQ-YRIVGCDEFDPAKQWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D I V  P G+    I ++ +
Sbjct: 120 SIDSPVARALIGKQIDDEIQVETPAGKVMLYINKIWY 156


>gi|74313909|ref|YP_312328.1| transcription elongation factor GreB [Shigella sonnei Ss046]
 gi|73857386|gb|AAZ90093.1| Transcription elongation factor [Shigella sonnei Ss046]
 gi|323164968|gb|EFZ50759.1| transcription elongation factor GreB [Shigella sonnei 53G]
          Length = 158

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   ++++ S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCMENLKIVNYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156


>gi|320160999|ref|YP_004174223.1| transcription elongation factor GreA [Anaerolinea thermophila
           UNI-1]
 gi|319994852|dbj|BAJ63623.1| transcription elongation factor GreA [Anaerolinea thermophila
           UNI-1]
          Length = 155

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 90/156 (57%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +   +T+ G  ++Q+EL + +   R  + K +  A   GDLSENA+Y  AKE Q   E
Sbjct: 1   MAEIHYLTADGLRRLQEELEYLKGPAREELSKRLRFAIQQGDLSENADYIQAKEEQGFLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL  I+    +I+ +    D +  GA V++ E+    +  YQ+VG +EAD +   +
Sbjct: 61  GRILELTQILNNYVLIEENNNHKDVVNLGAKVTIQEEGFEPE-TYQVVGPKEADPKKNRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPI +ALIG+ +G++++   P G+ T++IL + 
Sbjct: 120 SHESPIGKALIGRGVGEVVTAETPTGKITFKILSIE 155


>gi|313677277|ref|YP_004055273.1| transcription elongation factor grea [Marivirga tractuosa DSM 4126]
 gi|312943975|gb|ADR23165.1| transcription elongation factor GreA [Marivirga tractuosa DSM 4126]
          Length = 157

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 93/155 (60%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T +G  K+++EL   +  ERP+    I+EAR  GDLSENAEY AAKE Q L E
Sbjct: 1   MSKVSYYTEEGLRKMKEELHHLKTVERPKASADIAEARDKGDLSENAEYDAAKEAQGLLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++ +LE ++  A VI  S +   ++       +  K +G +  Y +V ++EA+++ G +
Sbjct: 61  MKINKLETVVANARVIKESDVDTSKVGLLTKAKIKNKKNGMEVTYTMVSEEEANLKEGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SI SPI + ++GK++G+I  V+AP G+  +EIL +
Sbjct: 121 SIKSPIGKGIMGKKVGEIAEVDAPAGKMEFEILDI 155


>gi|284035974|ref|YP_003385904.1| transcription elongation factor GreA [Spirosoma linguale DSM 74]
 gi|283815267|gb|ADB37105.1| transcription elongation factor GreA [Spirosoma linguale DSM 74]
          Length = 157

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 98/155 (63%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M      T +G ++++ EL   + + R  I + I+EAR  GDLSENAEY AAK+ Q L+E
Sbjct: 1   MAKISYYTEEGLNRLKAELVELKTKGRAAIARQIAEARDKGDLSENAEYDAAKDAQGLHE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++++LE +++ A V+D ST+   +++  + V +  K SG +  Y +V ++EAD+++G +
Sbjct: 61  LKISKLEEVLSNARVLDESTIDASQVSVLSKVKIKNKKSGAEMLYILVSEEEADLKTGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SPI + L+GK +GD   +  P G   +E++++
Sbjct: 121 SVGSPIGKGLLGKRVGDTAEIKVPAGVLEFEVMEI 155


>gi|312795407|ref|YP_004028329.1| transcription elongation factor greB [Burkholderia rhizoxinica HKI
           454]
 gi|312167182|emb|CBW74185.1| Transcription elongation factor greB [Burkholderia rhizoxinica HKI
           454]
          Length = 186

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 76/154 (49%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+ +++ EL      ERP +++ +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYMTPEGYRRLKDELLQLIDVERPEVVRMVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F         + G +    IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDSSRQENTDQVFFGATVHYATSDGAENQITIVGVDEVDLDRGRVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+   +GD + ++ PGG +  +IL V +
Sbjct: 148 SPIARALLKARIGDTVPLHTPGGIEQIDILDVHY 181


>gi|254163334|ref|YP_003046442.1| transcription elongation factor GreB [Escherichia coli B str.
           REL606]
 gi|297517135|ref|ZP_06935521.1| transcription elongation factor GreB [Escherichia coli OP50]
 gi|242378929|emb|CAQ33727.1| transcription elongation factor GreB [Escherichia coli BL21(DE3)]
 gi|253975235|gb|ACT40906.1| transcription elongation factor GreB [Escherichia coli B str.
           REL606]
 gi|253979391|gb|ACT45061.1| transcription elongation factor GreB [Escherichia coli BL21(DE3)]
          Length = 158

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++KI+QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLVTREGYEKIKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 156


>gi|83720256|ref|YP_442130.1| transcription elongation factor GreB [Burkholderia thailandensis
           E264]
 gi|167619078|ref|ZP_02387709.1| transcription elongation factor GreB [Burkholderia thailandensis
           Bt4]
 gi|83654081|gb|ABC38144.1| transcription elongation factor GreB [Burkholderia thailandensis
           E264]
          Length = 187

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 72/154 (46%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL     E RP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G +    IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQDGIEHTVTIVGIDEVDLDRGHVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+   +GD +++  P G +  ++L V +
Sbjct: 148 SPIARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181


>gi|163802294|ref|ZP_02196188.1| transcription elongation factor GreA [Vibrio sp. AND4]
 gi|159173823|gb|EDP58637.1| transcription elongation factor GreA [Vibrio sp. AND4]
          Length = 157

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 114/158 (72%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+TS+G +++ +    R  + RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTSRG-EQLLRTELERLLKLRPQISQAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++TM    ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60  QIRDIEFKLSVAQVIDVTTMDNTGKVIFGSTVTLIDCDTEEEKTYQIVGDDEADIKAGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR LIGK  GD + +  PGG K +EI  V +I
Sbjct: 120 SVSSPIARGLIGKMEGDEVVIQTPGGAKDFEIDSVEYI 157


>gi|124267908|ref|YP_001021912.1| transcription elongation factor [Methylibium petroleiphilum PM1]
 gi|124260683|gb|ABM95677.1| transcription elongation factor [Methylibium petroleiphilum PM1]
          Length = 213

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 76/154 (49%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  GF +++ EL     +ERP++++ +S A   GD SEN +Y   K+     + R+
Sbjct: 55  KNYITPAGFARLRAELMQLLDDERPKVVETVSWAAKNGDRSENGDYLYGKKRLREIDRRI 114

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV D S   G    F           G ++   I G  EAD     VS  
Sbjct: 115 RFLTKRLEIAEVADPSVHRGSDQVFFGATVTYAAPDGVERTITIKGIDEADNLQAEVSWI 174

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL+   +GD +++  P G +T E+++V +
Sbjct: 175 SPVARALLKARVGDEVTLLTPQGPQTIEVIEVRY 208


>gi|49081530|gb|AAT50165.1| PA2859 [synthetic construct]
          Length = 169

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL       RP++ +A+SEA A GD SENAEY   K++    + R+  L
Sbjct: 15  ITPEGAARLRAELHELWHVRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +   +V+       +R+ FGA V+L +++      Y+IVG  E D+++  +SI SP+
Sbjct: 75  RKRLENLKVVGERPADPNRVYFGAWVTLEDEDGEQ-ARYRIVGPDELDLRNNQISIDSPL 133

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+GKEL   + V  P GEK + ++++ +
Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEIEY 164


>gi|296111138|ref|YP_003621519.1| transcription elongation factor GreA [Leuconostoc kimchii IMSNU
           11154]
 gi|295832669|gb|ADG40550.1| transcription elongation factor GreA [Leuconostoc kimchii IMSNU
           11154]
          Length = 160

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/159 (42%), Positives = 99/159 (62%), Gaps = 3/159 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T++G DK+Q EL      +RP I   I  AR+YGDLSEN+EYQ+AK+ Q  
Sbjct: 1   MSEEKVFPMTAEGRDKLQTELEDLITRQRPEITTRIQIARSYGDLSENSEYQSAKDEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  L+ +I  AE+ID +  + D ++ G TV+  E    + + Y IVG  E+D  SG
Sbjct: 61  VEGRIQTLKKMIENAEIIDPNATAADEVSLGKTVTFKELPDEEAETYAIVGSTESDPLSG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
            +S  S +A ALIGK++GD ++V  P G+  T EIL+V 
Sbjct: 121 KISNESAMAVALIGKKVGDKVAVPLPSGDNITVEILKVE 159


>gi|269140621|ref|YP_003297322.1| transcription elongation factor [Edwardsiella tarda EIB202]
 gi|267986282|gb|ACY86111.1| transcription elongation factor [Edwardsiella tarda EIB202]
 gi|304560408|gb|ADM43072.1| Transcription elongation factor GreB [Edwardsiella tarda FL6-60]
          Length = 158

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYEKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   ++  +++D S     ++ FGA V +  +    K  ++IVG  E   ++  +S
Sbjct: 61  RVRYLRKCMSILKIVDYSPQQDGKVFFGAWVEVENERGDIK-RFRIVGYDEIFGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD  +V  P G+  + +  + ++
Sbjct: 120 IDSPMARALLKKEVGDAATVATPQGDAEWYVNAIDYV 156


>gi|324009407|gb|EGB78626.1| transcription elongation factor GreB [Escherichia coli MS 57-2]
          Length = 170

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 13  MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 72

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 73  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 131

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P G  ++ +  + ++
Sbjct: 132 IDSPMARALLKKEVGDLAVVNTPAGGASWYVNAIEYV 168


>gi|209519140|ref|ZP_03267945.1| transcription elongation factor GreB [Burkholderia sp. H160]
 gi|209500440|gb|EEA00491.1| transcription elongation factor GreB [Burkholderia sp. H160]
          Length = 189

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 74/154 (48%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL      ERP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 29  KNYMTPAGHRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G++    IVG  E D+  G VS  
Sbjct: 89  RFLTKRLDLAEVVDSSRQENVDQVFFGATVDYATEDGEEHKVTIVGIDEVDLDIGHVSWI 148

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+  ++GD +++  P G +  +IL V +
Sbjct: 149 SPIARALLKAKVGDTVTLFTPAGPQPIDILDVKY 182


>gi|199597193|ref|ZP_03210625.1| Transcription elongation factor [Lactobacillus rhamnosus HN001]
 gi|229552515|ref|ZP_04441240.1| elongation factor GreA [Lactobacillus rhamnosus LMS2-1]
 gi|258508708|ref|YP_003171459.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG]
 gi|258539888|ref|YP_003174387.1| transcription elongation factor GreA [Lactobacillus rhamnosus Lc
           705]
 gi|199591997|gb|EDZ00072.1| Transcription elongation factor [Lactobacillus rhamnosus HN001]
 gi|229314067|gb|EEN80040.1| elongation factor GreA [Lactobacillus rhamnosus LMS2-1]
 gi|257148635|emb|CAR87608.1| Transcription elongation factor greA [Lactobacillus rhamnosus GG]
 gi|257151564|emb|CAR90536.1| Transcription elongation factor greA [Lactobacillus rhamnosus Lc
           705]
 gi|259650015|dbj|BAI42177.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG]
          Length = 156

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 64/157 (40%), Positives = 105/157 (66%), Gaps = 3/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK  P+T++G  K++ EL   + ++RP +I+ I  AR +GDLSEN+EY+AAK+ Q+  
Sbjct: 1   MADKSYPMTAEGKKKLENELEELKTKKRPEVIERIKVARGFGDLSENSEYEAAKDEQSTL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+  ++ ++  AE+ID   ++ + ++ G  V+  E   GD++ Y+IVG  EAD  +G 
Sbjct: 61  ENRIVTIQTMLRYAEIIDAKAVAKNEVSIGKKVTFEED--GDEETYEIVGAAEADAFNGK 118

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ LIG+++GD +++N PGGE T +I +V 
Sbjct: 119 ISNESPIAQGLIGRKVGDQVTINTPGGEMTVKITKVE 155


>gi|83644091|ref|YP_432526.1| transcription elongation factor [Hahella chejuensis KCTC 2396]
 gi|83632134|gb|ABC28101.1| Transcription elongation factor [Hahella chejuensis KCTC 2396]
          Length = 158

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 110/158 (69%), Gaps = 1/158 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KIP+T  G   +++EL   +  +RPR+I AI+EAR +GDL ENAEY AA+E Q+  EG
Sbjct: 1   MSKIPMTKAGEQALREELNRLKTVDRPRVITAIAEAREHGDLKENAEYHAAREQQSFIEG 60

Query: 62  RMAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+AE+E+ ++ +++ID  S  +  ++ FG TV+++  ++ D  +YQIVGD EAD++ G +
Sbjct: 61  RIAEIESKLSMSQIIDLTSIENTGKVIFGVTVNIINLDTDDVSSYQIVGDDEADIKKGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIARALIGK +GD++ V  P G   YEI  V  +
Sbjct: 121 SVSSPIARALIGKTVGDVVVVQVPSGMVEYEIDGVQHL 158


>gi|330815852|ref|YP_004359557.1| Transcription elongation factor [Burkholderia gladioli BSR3]
 gi|327368245|gb|AEA59601.1| Transcription elongation factor [Burkholderia gladioli BSR3]
          Length = 186

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 73/154 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL     EERP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLHLIDEERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G+     IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQESADQVFFGATVDYATEDGEDHTITIVGVDEVDLDHGHVSWV 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+   +GD +++  P G +  ++L V +
Sbjct: 148 SPIARALLKARIGDTVTLMTPAGPQPIDVLDVRY 181


>gi|167563692|ref|ZP_02356608.1| transcription elongation factor GreB [Burkholderia oklahomensis
           EO147]
 gi|167570842|ref|ZP_02363716.1| transcription elongation factor GreB [Burkholderia oklahomensis
           C6786]
          Length = 187

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 72/154 (46%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL     E RP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G +    IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQDGTEHTVTIVGVDEVDLDRGHVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL+   +GD +++  P G +  ++L V +
Sbjct: 148 SPVARALLKARVGDTVTLLTPVGPEPIDVLDVRY 181


>gi|85708556|ref|ZP_01039622.1| transcription elongation factor [Erythrobacter sp. NAP1]
 gi|85690090|gb|EAQ30093.1| transcription elongation factor [Erythrobacter sp. NAP1]
          Length = 158

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 76/157 (48%), Positives = 115/157 (73%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+ ++G++++  +L+  + EERPRI+ AI EARA+GDLSENAEY AAKE Q   E 
Sbjct: 4   MEKVPMLAEGYERLTTDLKALR-EERPRIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++ +LE  I+RA++ID  T+SGDRI FGATV+L++++      YQIVG+ EAD   G +S
Sbjct: 63  QIGDLEGKISRAQIIDPKTLSGDRIIFGATVTLLDEDDKP-IKYQIVGETEADAAKGRIS 121

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            SSP+ARA+IGK++ + I V  P G+K Y + ++ +I
Sbjct: 122 YSSPLARAMIGKQVEEEIEVTVPSGDKFYLVEKIEFI 158


>gi|288957371|ref|YP_003447712.1| transcription elongation factor [Azospirillum sp. B510]
 gi|288909679|dbj|BAI71168.1| transcription elongation factor [Azospirillum sp. B510]
          Length = 183

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 75/154 (48%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  GF ++Q+ELR   + ERP++++ +S A   GD SEN +Y   K+     + R+
Sbjct: 28  KNYMTPPGFQRMQEELRHLLRVERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V++          F        +  G +    IVG  E D   G VS  
Sbjct: 88  RFLNKRLESAVVVNPQDQKNREQVFFGATVTYAREDGSENTVTIVGADEVDPDRGHVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+    GD++ V  P G +  E+L++ +
Sbjct: 148 SPIARALLKAREGDMVDVRTPAGMEQVEVLEIRY 181


>gi|304405775|ref|ZP_07387433.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus
           YK9]
 gi|304345018|gb|EFM10854.1| GreA/GreB family elongation factor [Paenibacillus curdlanolyticus
           YK9]
          Length = 158

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK + +T  G  K+++EL   +  +R  + + I  A  YGD+SEN+EY+ AK  Q   
Sbjct: 1   MGDKEVILTQDGLRKLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A +I+   +  + ++ G+TVS+ +   GD  +Y IVG  E+D  +  
Sbjct: 61  EGRIITLEKMLRNARIINNDEIDTETVSIGSTVSVEDLEFGDTVDYTIVGTAESDPLNNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +A++GK++G  + V+ P G   Y+IL++ 
Sbjct: 121 ISNESPVGKAILGKKVGATVEVSVPAGVIQYKILEIK 157


>gi|238921494|ref|YP_002935009.1| transcription elongation factor GreB [Edwardsiella ictaluri 93-146]
 gi|238871063|gb|ACR70774.1| transcription elongation factor GreB [Edwardsiella ictaluri 93-146]
          Length = 158

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYEKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   ++  +++D +     ++ FGA V +  +    K  ++IVG  E   ++  +S
Sbjct: 61  RVRYLRKCMSILKIVDYAPQQNGKVFFGAWVEVENERGDIK-RFRIVGYDEIFGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD  +V  P G+  + +  + ++
Sbjct: 120 IDSPMARALLKKEVGDAATVATPQGDAEWYVNAINYV 156


>gi|302876582|ref|YP_003845215.1| transcription elongation factor GreA [Clostridium cellulovorans
           743B]
 gi|307687257|ref|ZP_07629703.1| transcription elongation factor GreA [Clostridium cellulovorans
           743B]
 gi|302579439|gb|ADL53451.1| transcription elongation factor GreA [Clostridium cellulovorans
           743B]
          Length = 158

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 89/155 (57%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T +G  K++ EL + +   R  I + I  A ++GDLSEN+EY  AK  Q   EG
Sbjct: 3   SKKYVMTYEGLKKLEDELEFLKTVRRNDIKEKIKVALSFGDLSENSEYDEAKNEQAFVEG 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++A+LE ++ +  V+D + + GD +  G  V + + +SGD   Y IVG  EAD     +S
Sbjct: 63  KIAQLEAMLKKVTVVDETDIQGDIVGIGTKVKVKDIDSGDVDVYSIVGSAEADPLEFKIS 122

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+ +A++GK++G+ + V  P G    EIL++ 
Sbjct: 123 HESPVGKAMLGKKVGETVDVAVPDGTIKLEILEIT 157


>gi|253987638|ref|YP_003038994.1| transcription elongation factor GreB [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253779088|emb|CAQ82248.1| transcription elongation factor greb (transcript cleavage facto
           greb) [Photorhabdus asymbiotica]
          Length = 157

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K+++EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTKLITREGYNKLKKELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +     +D S     ++ FGA V +       K  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKSLEELRCVDYSPQQDGKVFFGAWVEIENAQGEIK-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD + V+ P GE  + + ++ ++
Sbjct: 120 IDSPMARALLKKEVGDSVIVHTPTGEVMWYVNEIEYV 156


>gi|167758613|ref|ZP_02430740.1| hypothetical protein CLOSCI_00953 [Clostridium scindens ATCC 35704]
 gi|167663809|gb|EDS07939.1| hypothetical protein CLOSCI_00953 [Clostridium scindens ATCC 35704]
          Length = 160

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 86/154 (55%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T  G   ++ EL   +  +R  + + I EAR  GDLSENAEY AAK+ Q   E 
Sbjct: 3   AKKRLLTYAGLKALEDELENLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEA 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I+  AEV+    +  ++I  G TV + +K   ++  ++IVG  EA+   G +S
Sbjct: 63  RIEELEGILKNAEVVVEDEVDYNKINVGCTVKVFDKTFDEEMEFKIVGSTEANSLEGKIS 122

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+ +ALIG ++GD + V    G   YE+L +
Sbjct: 123 NESPVGQALIGCKVGDTVEVETQAGIMEYEVLNI 156


>gi|299147539|ref|ZP_07040603.1| transcription elongation factor GreA [Bacteroides sp. 3_1_23]
 gi|298514326|gb|EFI38211.1| transcription elongation factor GreA [Bacteroides sp. 3_1_23]
          Length = 154

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/150 (38%), Positives = 95/150 (63%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+ K+  EL+  +  ERP+I  AI+EAR  GDLSENAEY AAKE Q + E R+ +
Sbjct: 3   YMSEEGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMRINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I  A++ID S +  D +   + V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 63  LKATIADAKIIDESKLKTDSVQILSKVELKNVKNGMKMIYTIVSESEANLKEGKISVNTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+GK++GD+  +  P G+   E++ +
Sbjct: 123 IAQGLLGKKVGDVAEITVPQGKIALEVVNI 152


>gi|270264441|ref|ZP_06192707.1| transcription elongation factor GreB [Serratia odorifera 4Rx13]
 gi|270041577|gb|EFA14675.1| transcription elongation factor GreB [Serratia odorifera 4Rx13]
          Length = 157

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+D ++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MRTQLITREGYDNLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + + +++D S     ++ FGA V +  +N   K  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCLEQLKIVDYSPQQEGKVFFGAWVEVENENGECK-RFRIVGYDEIFGRRDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD  +VN P G+  + + ++ ++
Sbjct: 120 IDSPMARALLKKEVGDAATVNTPVGDALWYVNEIEYV 156


>gi|78065582|ref|YP_368351.1| transcription elongation factor GreB [Burkholderia sp. 383]
 gi|77966327|gb|ABB07707.1| transcription elongation factor GreB [Burkholderia sp. 383]
          Length = 187

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 73/154 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL      ERP +++ +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F       E   G+     IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQENVDQVFFGATVDYETPDGEDHTITIVGIDEVDLDHGCVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARALI  ++GD + +  P G +  ++L V +
Sbjct: 148 SPVARALIKAKIGDTVMLMTPAGPQPIDVLDVRY 181


>gi|301302284|ref|ZP_07208416.1| transcription elongation factor GreB [Escherichia coli MS 124-1]
 gi|300842447|gb|EFK70207.1| transcription elongation factor GreB [Escherichia coli MS 124-1]
 gi|315255996|gb|EFU35964.1| transcription elongation factor GreB [Escherichia coli MS 85-1]
          Length = 170

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 13  MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 72

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 73  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFDRKDYIS 131

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ +  + ++
Sbjct: 132 IDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 168


>gi|15598055|ref|NP_251549.1| transcription elongation factor GreB [Pseudomonas aeruginosa PAO1]
 gi|107102408|ref|ZP_01366326.1| hypothetical protein PaerPA_01003470 [Pseudomonas aeruginosa PACS2]
 gi|116050862|ref|YP_790315.1| transcription elongation factor GreB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218890942|ref|YP_002439808.1| transcription elongation factor GreB [Pseudomonas aeruginosa
           LESB58]
 gi|254235846|ref|ZP_04929169.1| transcription elongation factor GreB [Pseudomonas aeruginosa C3719]
 gi|296388654|ref|ZP_06878129.1| transcription elongation factor GreB [Pseudomonas aeruginosa PAb1]
 gi|313108005|ref|ZP_07794172.1| transcription elongation factor GreB [Pseudomonas aeruginosa 39016]
 gi|25453010|sp|Q9HZY5|GREB_PSEAE RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|9948947|gb|AAG06247.1|AE004712_7 transcription elongation factor GreB [Pseudomonas aeruginosa PAO1]
 gi|115586083|gb|ABJ12098.1| transcription elongation factor GreB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126167777|gb|EAZ53288.1| transcription elongation factor GreB [Pseudomonas aeruginosa C3719]
 gi|218771167|emb|CAW26932.1| transcription elongation factor GreB [Pseudomonas aeruginosa
           LESB58]
 gi|310880674|gb|EFQ39268.1| transcription elongation factor GreB [Pseudomonas aeruginosa 39016]
          Length = 168

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL       RP++ +A+SEA A GD SENAEY   K++    + R+  L
Sbjct: 15  ITPEGAARLRAELHELWHVRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +   +V+       +R+ FGA V+L +++      Y+IVG  E D+++  +SI SP+
Sbjct: 75  RKRLENLKVVGERPADPNRVYFGAWVTLEDEDGEQ-ARYRIVGPDELDLRNNQISIDSPL 133

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+GKEL   + V  P GEK + ++++ +
Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEIEY 164


>gi|302871282|ref|YP_003839918.1| GreA/GreB family elongation factor [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574141|gb|ADL41932.1| GreA/GreB family elongation factor [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 162

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 93/152 (61%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  ++ + ++K  +EL   +  +R  + + I  AR++GDLSEN+EY  AK  Q   E R+
Sbjct: 9   KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAAVEERI 68

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           A LE +I  A++ID   +S D +  G  V +   ++GD   Y IVG +EAD  +  +S  
Sbjct: 69  AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDVFEYSIVGSKEADPLNFKISDE 128

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+ +AL+GK++GD++ VN P G+  Y+IL++
Sbjct: 129 SPVGKALVGKKVGDVVEVNVPAGKFRYKILEI 160


>gi|315634956|ref|ZP_07890237.1| transcription elongation factor GreB [Aggregatibacter segnis ATCC
           33393]
 gi|315476218|gb|EFU66969.1| transcription elongation factor GreB [Aggregatibacter segnis ATCC
           33393]
          Length = 160

 Score =  131 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G++ + +EL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 2   MAKSNYITRQGWNVLDRELKFLWKEERPQVTQAVSDAAALGDRSENAEYIYGKRRLREID 61

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D S     ++ FGA V L  ++   K+ Y+IVG  E D     +
Sbjct: 62  RRVRFLTKRLEVLQIVDYSPKQEGKVFFGAWVELENEDGEVKQ-YRIVGCDEFDPAKNWI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGKE  D I+V  P G+    + ++ +
Sbjct: 121 SIDSPVARALIGKEEDDEITVETPSGKIQLYVNRIWY 157


>gi|259910054|ref|YP_002650410.1| transcription elongation factor GreB [Erwinia pyrifoliae Ep1/96]
 gi|224965676|emb|CAX57208.1| Transcription elongation factor [Erwinia pyrifoliae Ep1/96]
          Length = 159

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++ ++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTKLITREGYNLLKQELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + +  ++D S     ++ FGA V +   +   K  ++IVG  E   ++  +S
Sbjct: 61  RVRYLTKCLEQLRIVDYSPQQDGKVFFGAWVEVENDDGDIK-RFRIVGYDEIFGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD  +V  P GE  + I  + ++
Sbjct: 120 IDSPMARALLKKEVGDAATVFTPAGEALWYINDISYV 156


>gi|116495149|ref|YP_806883.1| transcription elongation factor [Lactobacillus casei ATCC 334]
 gi|191638657|ref|YP_001987823.1| Transcription elongation factor GreA (Transcriptcleavage factor
           GreA) [Lactobacillus casei BL23]
 gi|227534836|ref|ZP_03964885.1| elongation factor GreA [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239632029|ref|ZP_04675060.1| transcription elongation factor [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301066713|ref|YP_003788736.1| transcription elongation factor [Lactobacillus casei str. Zhang]
 gi|116105299|gb|ABJ70441.1| transcription elongation factor GreA [Lactobacillus casei ATCC 334]
 gi|190712959|emb|CAQ66965.1| Transcription elongation factor GreA (Transcriptcleavage factor
           GreA) [Lactobacillus casei BL23]
 gi|227187592|gb|EEI67659.1| elongation factor GreA [Lactobacillus paracasei subsp. paracasei
           ATCC 25302]
 gi|239526494|gb|EEQ65495.1| transcription elongation factor [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300439120|gb|ADK18886.1| Transcription elongation factor [Lactobacillus casei str. Zhang]
 gi|327382699|gb|AEA54175.1| Elongation factor GreA [Lactobacillus casei LC2W]
 gi|327385886|gb|AEA57360.1| Elongation factor GreA [Lactobacillus casei BD-II]
          Length = 156

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 103/157 (65%), Gaps = 3/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK  P+T++G  K++ EL   + ++RP +I  I  AR +GDLSEN+EY+AAK+ Q+  
Sbjct: 1   MADKSYPMTAEGKKKLEDELEELKTKKRPEVIDRIKVARGFGDLSENSEYEAAKDEQSTL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+  ++ ++  AE+ID   ++ + ++ G  V+  E   GD++ Y+IVG  EAD  +G 
Sbjct: 61  ENRIVTIQTMLRYAEIIDSKAVAKNEVSLGKKVTFEED--GDEETYEIVGAAEADAFNGK 118

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ LIG+++GD ++++ PGGE   +I +V 
Sbjct: 119 ISNESPIAQGLIGRKVGDKVTISTPGGEMKIKITKVE 155


>gi|116617590|ref|YP_817961.1| transcription elongation factor GreA [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
 gi|122272209|sp|Q03YY4|GREA_LEUMM RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|116096437|gb|ABJ61588.1| transcription elongation factor GreA [Leuconostoc mesenteroides
           subsp. mesenteroides ATCC 8293]
          Length = 160

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/159 (42%), Positives = 100/159 (62%), Gaps = 3/159 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T++G DK+Q EL      +RP I K I  AR+YGDLSEN+EYQ+AK+ Q  
Sbjct: 1   MSEEKTYPMTAEGRDKLQLELEDLIANQRPEITKRIQIARSYGDLSENSEYQSAKDEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  L+N+I  AE+ID +  + D ++ G TV+  E  + + + Y IVG  EAD  +G
Sbjct: 61  VEGRIQTLKNMIDNAEIIDSNATAKDEVSLGKTVTFKELPNEEPETYAIVGSVEADPLAG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
            +S  SP+A ALIGK++G+ ++V  P G     EI+ V 
Sbjct: 121 KISNESPMANALIGKKVGETVAVPLPNGISIDVEIINVT 159


>gi|210623236|ref|ZP_03293675.1| hypothetical protein CLOHIR_01625 [Clostridium hiranonis DSM 13275]
 gi|210153773|gb|EEA84779.1| hypothetical protein CLOHIR_01625 [Clostridium hiranonis DSM 13275]
          Length = 159

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/153 (36%), Positives = 91/153 (59%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            +I +T +GFDK++ EL   +   R  + + +  A +YGDLSENAEY  AK+ Q   E +
Sbjct: 5   KEILLTQEGFDKLEAELEELKIVGRKDVAEKLKVAISYGDLSENAEYDEAKKEQAELEEK 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ++EN+I +A +ID  ++   ++  G+ V L + +  ++  Y IVG  EAD  +G +S 
Sbjct: 65  ILKIENMIRKATIIDEESIDLSKVTAGSIVKLYDYDFEEEVTYTIVGSTEADPFAGKISN 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SPI +A++GK  GD + V  P G   Y+IL +
Sbjct: 125 ESPIGKAILGKSEGDEVEVQVPDGVVKYKILSI 157


>gi|240949386|ref|ZP_04753727.1| transcription elongation factor GreB [Actinobacillus minor NM305]
 gi|240296135|gb|EER46791.1| transcription elongation factor GreB [Actinobacillus minor NM305]
          Length = 162

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRDGWQALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V L  +       Y+IVG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEEGE-VAQYRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK   D I+V  P G+  + I ++ +
Sbjct: 120 SIDSPVARALIGKMQDDEITVETPIGKVMWFINKIWY 156


>gi|327480631|gb|AEA83941.1| transcription elongation factor GreB [Pseudomonas stutzeri DSM
           4166]
          Length = 165

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/151 (32%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL       RP++ +++SEA A GD SENAEY   K++    + R+  L
Sbjct: 15  ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              + + +V+       +++ FGA V+L +++      Y+IVG  E D++ G++SI SP+
Sbjct: 75  TKRLEKLKVVSERPGDPNKVYFGAWVTLEDEDGAQ-ARYRIVGPDELDLRQGMISIDSPL 133

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+GK L   + V  P G K + ++ + +
Sbjct: 134 ARALVGKALDAEVQVQTPTGTKLWYVVAIDY 164


>gi|226324188|ref|ZP_03799706.1| hypothetical protein COPCOM_01967 [Coprococcus comes ATCC 27758]
 gi|225207737|gb|EEG90091.1| hypothetical protein COPCOM_01967 [Coprococcus comes ATCC 27758]
          Length = 160

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 89/154 (57%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T  G  K++ EL   +  +R  +   I EAR  GDLSENAEY AAK+ Q   E 
Sbjct: 3   AKKTLLTYTGLKKLEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEA 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I+  AEV+    +  D I  G TV + +K   ++  +Q+VG  EA+   G +S
Sbjct: 63  RIEELEKILKNAEVVVEDDVDLDTINIGCTVDVYDKEFEEEIVFQLVGSTEANSLEGKIS 122

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+ +ALIGK++GD+++V    G   YE+L++
Sbjct: 123 NESPVGKALIGKKVGDVVAVETQAGVIEYEVLKI 156


>gi|292489910|ref|YP_003532800.1| transcription elongation factor greB [Erwinia amylovora CFBP1430]
 gi|292900946|ref|YP_003540315.1| transcription elongation factor [Erwinia amylovora ATCC 49946]
 gi|291200794|emb|CBJ47928.1| transcription elongation factor [Erwinia amylovora ATCC 49946]
 gi|291555347|emb|CBA23711.1| Transcription elongation factor greB [Erwinia amylovora CFBP1430]
 gi|312174094|emb|CBX82347.1| Transcription elongation factor greB [Erwinia amylovora ATCC
           BAA-2158]
          Length = 159

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++ ++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTKLITREGYNLLKQELDFLWREERPEVTKKVAWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + +  ++D S     ++ FGA V +   +   K  ++IVG  E   ++  +S
Sbjct: 61  RIRYLTKCLEQLRIVDYSPQQDGKVFFGAWVEVENDDGDIK-RFRIVGYDEIFGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD  +V  P GE  + +  + ++
Sbjct: 120 IDSPMARALLKKEVGDAATVFTPAGEALWYVNAISYV 156


>gi|254457427|ref|ZP_05070855.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD
           1]
 gi|207086219|gb|EDZ63503.1| GreA/GreB family elongation factor [Campylobacterales bacterium GD
           1]
          Length = 174

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 102/154 (66%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K P++ +G+D + +E ++  + E+P+  +    A A GD SENA+Y AAKE     + R+
Sbjct: 2   KEPMSIEGYDLLVEEFKFLLEVEKPKTAEEKLVAAAQGDRSENADYHAAKEKLRFIDKRL 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L ++I ++++ID S+   ++++FG+TV ++  ++ +++ Y + G  E++ + GL+S+ 
Sbjct: 62  FYLNSMIQKSQIIDPSSYEHNKVSFGSTVKILNIDTDEEETYTLCGVLESEPEHGLISVH 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIA+ALIGKE+ D   +N P G+K YEIL++ +
Sbjct: 122 SPIAKALIGKEVEDEFKINLPMGKKEYEILEIEY 155


>gi|227530498|ref|ZP_03960547.1| elongation factor GreA [Lactobacillus vaginalis ATCC 49540]
 gi|227349603|gb|EEJ39894.1| elongation factor GreA [Lactobacillus vaginalis ATCC 49540]
          Length = 158

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 102/158 (64%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T +G  K++QEL   + + RP +IK I  AR+YGDLSEN+EY++AK+ Q  
Sbjct: 1   MAEEKTFPMTLEGKQKLEQELEDLKMKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR++++EN++  AE+ID   +  D ++ G  V++ E    + ++YQIVG+ E+D  +G
Sbjct: 61  VEGRISQIENMLQYAEIIDNDDVDKDEVSMGRKVTIKELPDEEPESYQIVGESESDPFNG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+A+ L+G ++G+ + +  P G    +IL V 
Sbjct: 121 KISNESPMAKGLLGHKVGEEVEIEIPNGTMKVKILSVE 158


>gi|189465343|ref|ZP_03014128.1| hypothetical protein BACINT_01691 [Bacteroides intestinalis DSM
           17393]
 gi|189437617|gb|EDV06602.1| hypothetical protein BACINT_01691 [Bacteroides intestinalis DSM
           17393]
          Length = 154

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 94/152 (61%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++  G+ K+  EL+  +  ERP+I  AI+EAR  GDLSENAEY AAKE Q + E ++ +
Sbjct: 3   YMSEDGYKKLMAELKELETVERPKISAAIAEARDKGDLSENAEYDAAKEAQGMLEMKINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ II  A++ID S +  D +     V L    +G K  Y IV + EA+++ G +S+++P
Sbjct: 63  LKTIIADAKIIDESKLKTDSVQILNKVELKNVKNGMKMTYTIVSESEANLKEGKISVNTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++G++  +  P G    E++ + +
Sbjct: 123 IAQGLLGKKVGEVAEIKVPQGMVNLEVMNISF 154


>gi|163792651|ref|ZP_02186628.1| Transcription elongation factor [alpha proteobacterium BAL199]
 gi|159182356|gb|EDP66865.1| Transcription elongation factor [alpha proteobacterium BAL199]
          Length = 185

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 92/155 (59%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +GF  ++ ELR  ++ ERP++++ +S A   GD SEN +Y   K+     + R+
Sbjct: 29  KNYITPRGFQAMRDELRQLRRVERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D     + D++ FGATV+  ++   +++  +IVG  EAD++ G VS 
Sbjct: 89  RFLLKRLEIAEVVDPAQQKNHDQVFFGATVTYADEQ-DNERTVRIVGVDEADLERGEVSW 147

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +PIARAL+  + GD++ +  P G +  E++++ +
Sbjct: 148 IAPIARALLKAQEGDVVELRTPAGPQNIEVVRIAY 182


>gi|317494411|ref|ZP_07952825.1| transcription elongation factor GreB [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917661|gb|EFV39006.1| transcription elongation factor GreB [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 158

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 87/156 (55%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTQLITRGGYEKLKQELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + +  ++D S     ++ FGA V +       K  ++IVG  E   Q   +S
Sbjct: 61  RVRYLTKCLEQLRIVDYSPQQDGKVFFGAWVEVENDEGTIK-RFRIVGYDEIFGQKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+GD ++V  P GE  + + ++ +
Sbjct: 120 IDSPMARALLKKEVGDAVTVMTPAGEAVWYVNEIEY 155


>gi|307721519|ref|YP_003892659.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM
           16294]
 gi|306979612|gb|ADN09647.1| transcription elongation factor GreA [Sulfurimonas autotrophica DSM
           16294]
          Length = 174

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 97/154 (62%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K P++ +G+DK+ +E ++  + E+P++      A A GD SENA+YQAAKE     + R+
Sbjct: 2   KEPMSIEGYDKLIEEFKYLLEVEKPKVAHEKLVAAALGDRSENADYQAAKEKLRFIDKRL 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L  +I  + +ID S     ++AFG++V+LV  ++ D++ Y I G  E++ ++GL+SI 
Sbjct: 62  FYLNKMIQSSHIIDPSLHEHKQVAFGSSVTLVNIDTEDEEIYTICGVLESEPENGLISIH 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+A+A++GK+ GD   +  P   K YEI ++ +
Sbjct: 122 SPLAKAMLGKKEGDEFKIQLPNALKEYEIQKIKY 155


>gi|323490029|ref|ZP_08095250.1| transcription elongation factor GreA [Planococcus donghaensis
           MPA1U2]
 gi|323396325|gb|EGA89150.1| transcription elongation factor GreA [Planococcus donghaensis
           MPA1U2]
          Length = 158

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 101/157 (64%), Gaps = 2/157 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T+ G  K++ EL + +  +R  +++ I  AR +GDLSENAEY +AKE Q  
Sbjct: 1   MANEKQFPMTAAGKQKLEDELDFLKTIKRKEVVERIKIARDFGDLSENAEYDSAKEDQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR++ LE++I  A +I+ + ++ D +  G TV+ +E   GD+++Y IVG  EAD   G
Sbjct: 61  VEGRISTLESMIRNAVIINENELNKDIVRLGTTVTFIEVPDGDQESYTIVGSAEADPLEG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SPIA+++IG+ +G+ + V  PGGE   +IL +
Sbjct: 121 RISNDSPIAKSMIGRTIGEHVKVLTPGGEMEIKILSI 157


>gi|260913554|ref|ZP_05920031.1| transcription elongation factor GreB [Pasteurella dagmatis ATCC
           43325]
 gi|260632330|gb|EEX50504.1| transcription elongation factor GreB [Pasteurella dagmatis ATCC
           43325]
          Length = 164

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV    +T  G++ + QEL++  ++ERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 6   MVKSNYITRTGWNALDQELKFLWKDERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 65

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V+L  +    +K Y+IVG  E D     +
Sbjct: 66  RRVRFLMKRLEVLQIVDYNPKQEGKVFFGAWVALENEEGE-EKQYRIVGCDEFDPAKNWI 124

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK + D I VN P G   + + ++ +
Sbjct: 125 SIDSPVARALIGKAVDDEIKVNTPSGVVIFYVNRIWY 161


>gi|126726046|ref|ZP_01741888.1| transcription elongation factor GreA [Rhodobacterales bacterium
           HTCC2150]
 gi|126705250|gb|EBA04341.1| transcription elongation factor GreA [Rhodobacterales bacterium
           HTCC2150]
          Length = 156

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 76/156 (48%), Positives = 113/156 (72%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++KIP+T  GF  ++ EL+  +  ERP II AI+EAR +GDLSENAEY +A+E  +  EG
Sbjct: 1   MEKIPLTRGGFTALEAELKNLKTVERPAIIAAIAEAREHGDLSENAEYHSAREKHSFIEG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE II+ AEVID        I FGATV++V++++ ++K YQIVG+ EA+++ G ++
Sbjct: 61  RVKELEAIISLAEVIDP-VGMTGAIKFGATVTIVDEDTDEEKTYQIVGEHEANIEQGKLN 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SP++R LIGKE GD + V  PGG ++YEIL++ +
Sbjct: 120 LKSPLSRGLIGKEEGDSVEVKTPGGTRSYEILKIDF 155


>gi|227432544|ref|ZP_03914528.1| elongation factor GreA [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
 gi|227351722|gb|EEJ41964.1| elongation factor GreA [Leuconostoc mesenteroides subsp. cremoris
           ATCC 19254]
          Length = 160

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/159 (42%), Positives = 100/159 (62%), Gaps = 3/159 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T++G DK+Q EL      +RP I K I  AR+YGDLSEN+EYQ+AK+ Q  
Sbjct: 1   MSEEKIYPMTAEGRDKLQFELEDLIANQRPEITKRIQIARSYGDLSENSEYQSAKDEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  L+N+I  AE+ID +  + D ++ G TV+  E  + + + Y IVG  EAD  +G
Sbjct: 61  VEGRIQTLKNMIDNAEIIDSNATAKDEVSLGKTVTFKELPNEEPETYAIVGSVEADPLAG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
            +S  SP+A ALIGK++G+ ++V  P G     EI+ V 
Sbjct: 121 KISNESPMANALIGKKVGETVAVPLPNGISIDVEIINVT 159


>gi|121535049|ref|ZP_01666866.1| transcription elongation factor GreA [Thermosinus carboxydivorans
           Nor1]
 gi|121306299|gb|EAX47224.1| transcription elongation factor GreA [Thermosinus carboxydivorans
           Nor1]
          Length = 159

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T  G  KI+Q+L   +   R  + + I +A  +GD+SEN+EY+ AK  Q   
Sbjct: 1   MAEKQTILTVDGLKKIEQKLEHLKSVRRREVAERIKQAIEFGDISENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG +  LE ++  A+VID   +S D +  G+TV L +   GD+  Y +VG  EAD     
Sbjct: 61  EGEILTLEKMLRNAKVIDEGEISTDTVTIGSTVVLKDLEFGDELEYTLVGSAEADPMEFK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +A++G+++G ++ VN P G   Y+IL++ 
Sbjct: 121 ISNESPVGQAIMGQKVGSVVEVNVPAGILKYKILEIK 157


>gi|332295594|ref|YP_004437517.1| transcription elongation factor GreA [Thermodesulfobium narugense
           DSM 14796]
 gi|332178697|gb|AEE14386.1| transcription elongation factor GreA [Thermodesulfobium narugense
           DSM 14796]
          Length = 159

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M + I +T +G+D+++ EL + +  +   I + I EA+ + +   N EY+ AK  Q +  
Sbjct: 1   MKEIINLTQEGYDRLKNELEYLRDVKLKEISERIQEAKDFAEDFGNLEYEEAKSEQAMVL 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ ELE  ++ A +ID   +   R+  G  V + + N    K Y I+   EAD  +G +
Sbjct: 61  ARVNELEAQLSNARIIDKDKIEISRVGIGCKVVVKDLNKKTIKEYTILEPIEADPVNGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           S  SP+ +AL GK++GD ++V+ PGG     +++ + 
Sbjct: 121 SFQSPVGKALFGKQVGDEVTVHTPGGQTIKLKVVSIE 157


>gi|228476529|ref|ZP_04061219.1| transcription elongation factor GreA [Streptococcus salivarius
           SK126]
 gi|228251950|gb|EEK10996.1| transcription elongation factor GreA [Streptococcus salivarius
           SK126]
          Length = 160

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T    ++++ EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYVMTQAEKEQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG++  LE  I  AE++D   ++ D +A G TV + E  + DK  Y IVG   AD+ SG 
Sbjct: 61  EGQIQILETKIRYAEIVDSDAVANDEVAIGKTVVVQEVGTNDKDTYHIVGAAGADIFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK++GD +++ +P G  + EIL V 
Sbjct: 121 ISNESPIAQALIGKKVGDKVAIESPAGSYSVEILSVE 157


>gi|56417186|ref|YP_154260.1| transcription elongation factor greA [Anaplasma marginale str. St.
           Maries]
 gi|222475551|ref|YP_002563968.1| transcription elongation factor greA (greA) [Anaplasma marginale
           str. Florida]
 gi|254995354|ref|ZP_05277544.1| transcription elongation factor greA (greA) [Anaplasma marginale
           str. Mississippi]
 gi|255003541|ref|ZP_05278505.1| transcription elongation factor greA (greA) [Anaplasma marginale
           str. Puerto Rico]
 gi|56388418|gb|AAV87005.1| transcription elongation factor greA [Anaplasma marginale str. St.
           Maries]
 gi|222419689|gb|ACM49712.1| transcription elongation factor greA (greA) [Anaplasma marginale
           str. Florida]
          Length = 174

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 72/162 (44%), Positives = 107/162 (66%), Gaps = 6/162 (3%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             + P+T +GF K++ EL   +  ERP+IIK+IS+AR  GDLSENAEY AA+E Q L E 
Sbjct: 14  TTRFPITRRGFQKLEAELEALKS-ERPKIIKSISDARELGDLSENAEYHAARERQGLVES 72

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN----YQIVGDQEADVQS 117
           ++ ELE+  +RAEVID+S +SGD + FGATV++   +          YQIVG+ EADV  
Sbjct: 73  KIMELESKRSRAEVIDVSELSGDTVMFGATVTVSVYDEQTDSTGVMQYQIVGEYEADVSK 132

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
            ++SI SP+  +L+G+  GD + V  P G+   Y+I+++ ++
Sbjct: 133 NMISIKSPLVLSLLGRREGDSVEVKTPRGDYKIYQIMKIEFV 174


>gi|15603315|ref|NP_246389.1| transcription elongation factor GreB [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|13431537|sp|P57802|GREB_PASMU RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|12721829|gb|AAK03534.1| GreB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 158

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G++ + QEL++  ++ERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRSGWNALDQELKFLWKDERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V+L  +    +K+Y+IVG  E D     +
Sbjct: 61  RRVRFLTKRLEVLQIVDYHPKQEGKVFFGAWVALENEAGE-EKHYRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK + D I V  P G     I Q+ +
Sbjct: 120 SIDSPVARALIGKSIDDEIKVETPSGLVILYINQIWY 156


>gi|190575306|ref|YP_001973151.1| transcription elongation factor GreB [Stenotrophomonas maltophilia
           K279a]
 gi|190013228|emb|CAQ46862.1| putative transcription elongation factor [Stenotrophomonas
           maltophilia K279a]
          Length = 168

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 83/151 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G  +++ EL    +  RP ++KA++ A A GD SENAEY   K+     + R+  L
Sbjct: 15  ITASGHARLKAELDDLWRVRRPEVVKALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+D +      + FGA V L   +SG+   Y+IVG  E D   G +SI SP+
Sbjct: 75  TKRLESLRVVDTTPTDPLAVFFGAWVELENVDSGETSRYRIVGPDETDAGLGWISIDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+ K L D  SV  PGG+ T+ ++ V +
Sbjct: 135 ARALLKKRLDDEFSVELPGGQFTFAVISVEY 165


>gi|312128202|ref|YP_003993076.1| grea/greb family elongation factor [Caldicellulosiruptor
           hydrothermalis 108]
 gi|312793713|ref|YP_004026636.1| transcription elongation factor grea [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312877911|ref|ZP_07737855.1| transcription elongation factor GreA [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311778221|gb|ADQ07707.1| GreA/GreB family elongation factor [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311795303|gb|EFR11688.1| transcription elongation factor GreA [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312180853|gb|ADQ41023.1| transcription elongation factor GreA [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 162

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 93/152 (61%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  ++ + ++K  +EL   +  +R  + + I  AR++GDLSEN+EY  AK  Q   E R+
Sbjct: 9   KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAALEERI 68

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           A LE +I  A++ID   +S D +  G  V +   ++GD   Y IVG +EAD  +  +S  
Sbjct: 69  AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDVFEYSIVGSKEADPLNFKISDE 128

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+ +AL+GK++GD++ V+ P G+  Y+IL++
Sbjct: 129 SPVGKALMGKKVGDVVEVSVPAGKFRYKILEI 160


>gi|259046507|ref|ZP_05736908.1| transcription elongation factor GreA [Granulicatella adiacens ATCC
           49175]
 gi|259036672|gb|EEW37927.1| transcription elongation factor GreA [Granulicatella adiacens ATCC
           49175]
          Length = 159

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K+ P+T +G  K++ EL   +  +R  I++ I  AR+YGDLSEN+EY++AK+ Q   
Sbjct: 1   MTEKVFPMTLEGKAKLEAELEELKVVKRKEIVERIKIARSYGDLSENSEYESAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR++ LE +I  AE+ID + +  D ++ G  V+ +E   GD++ Y IVG  EA+   G 
Sbjct: 61  EGRISTLEKMIRFAEIIDDNNVEKDIVSLGRKVTFIELPDGDEETYTIVGSAEANPIEGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ +IGK+L + + +  PGGE    I+ + 
Sbjct: 121 ISNDSPIAKGIIGKKLNEEVVIPTPGGEMKIRIIDIQ 157


>gi|269797572|ref|YP_003311472.1| transcription elongation factor GreA [Veillonella parvula DSM 2008]
 gi|282850020|ref|ZP_06259402.1| transcription elongation factor GreA [Veillonella parvula ATCC
           17745]
 gi|294793385|ref|ZP_06758530.1| transcription elongation factor GreA [Veillonella sp. 6_1_27]
 gi|294795204|ref|ZP_06760338.1| transcription elongation factor GreA [Veillonella sp. 3_1_44]
 gi|269094201|gb|ACZ24192.1| transcription elongation factor GreA [Veillonella parvula DSM 2008]
 gi|282580209|gb|EFB85610.1| transcription elongation factor GreA [Veillonella parvula ATCC
           17745]
 gi|294453996|gb|EFG22371.1| transcription elongation factor GreA [Veillonella sp. 3_1_44]
 gi|294455816|gb|EFG24181.1| transcription elongation factor GreA [Veillonella sp. 6_1_27]
          Length = 157

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 92/158 (58%), Gaps = 3/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D  +  +T++G  K+++EL + +   R  + + I  A  YGD+SEN+EY  AK  Q  
Sbjct: 1   MADVKETLLTAEGLKKLEEELAYYKSVRRIEVSERIKTAIEYGDISENSEYDDAKNEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EG + ELEN I  A++ID S    D ++ G+ V++++    D+  Y IVG  EAD  + 
Sbjct: 61  IEGHIVELENKINTAKIIDESVKG-DVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNN 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+ +A++GK  GD + V+ P G  T+++L + 
Sbjct: 120 RISNESPVGKAILGKRKGDEVEVSTPDGPVTFKVLAIQ 157


>gi|229825233|ref|ZP_04451302.1| hypothetical protein GCWU000182_00585 [Abiotrophia defectiva ATCC
           49176]
 gi|229790605|gb|EEP26719.1| hypothetical protein GCWU000182_00585 [Abiotrophia defectiva ATCC
           49176]
          Length = 178

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 88/155 (56%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++ K  +T +G  ++++EL   +   R  I + I EAR  GDLSENAEY AAK+ Q   E
Sbjct: 22  IMTKNVMTYEGLQELEKELEHLKVNRRREIAEKIKEAREQGDLSENAEYDAAKDEQRDIE 81

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ E+E I+  AEV          +  G+T +L++    ++  Y++VG  EA+   G +
Sbjct: 82  ARIEEIEKILKNAEVFLEEDAEKGTVNLGSTFTLLDMEYDEEIVYKLVGATEANSLEGKI 141

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SP+ RAL G + GDI+ V  P G   Y+++++
Sbjct: 142 SNESPVGRALKGAKEGDIVEVETPAGTLQYKVIKI 176


>gi|254428022|ref|ZP_05041729.1| transcription elongation factor GreB [Alcanivorax sp. DG881]
 gi|196194191|gb|EDX89150.1| transcription elongation factor GreB [Alcanivorax sp. DG881]
          Length = 165

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G+ K+  EL++  +E+RP + +A+ EA A GD SENAEY   K+     + R+  
Sbjct: 14  YITVEGYHKLNDELQYLWKEKRPVVTQAVQEAAAQGDRSENAEYIYGKKQLREIDRRVRF 73

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +    V+D       RI FGA V L E   G  + Y++VG  E D   G +SI +P
Sbjct: 74  LSKRLDDMTVVDRVPEDQSRIFFGAWVEL-ETEDGGTETYRLVGPDETDAGRGYISIDAP 132

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +ARAL+ K++ D ++V  P GE+   I ++ +
Sbjct: 133 LARALLKKQVDDEVAVRTPAGERCLFINRIWY 164


>gi|325524704|gb|EGD02693.1| transcription elongation factor GreB [Burkholderia sp. TJI49]
          Length = 187

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 72/154 (46%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL      ERP +++ +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLNLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G+     IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQENVDQVFFGATVDYATPDGEDHTITIVGIDEVDLDRGCVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARALI   +GD +++  P G +  ++L V +
Sbjct: 148 SPVARALIKARIGDTVTLMTPAGPQPIDVLDVRY 181


>gi|119471395|ref|ZP_01613867.1| transcription elongation factor and transcript cleavage
           [Alteromonadales bacterium TW-7]
 gi|119445671|gb|EAW26955.1| transcription elongation factor and transcript cleavage
           [Alteromonadales bacterium TW-7]
          Length = 160

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 81/156 (51%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+ ++QQE       +RP + K +S A + GD SENA+YQ  K L    + 
Sbjct: 1   MKTNLITREGYLQLQQEHDHLWNVKRPEVTKIVSWAASLGDRSENADYQYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   I    +ID S +   ++ FGA V +  +    K  ++IVG  E   +   +S
Sbjct: 61  RVRYLRKRIPDLNIIDYSPVQDGKVFFGAWVEIENEQGDIK-KFRIVGPDEIYDRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALI K++ D   V  P G+K + I  + +
Sbjct: 120 IDSPMARALIKKQVDDDFEVMTPQGKKEWYINSIEY 155


>gi|303252629|ref|ZP_07338792.1| transcription elongation factor GreB [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307247388|ref|ZP_07529435.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307260861|ref|ZP_07542547.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|302648597|gb|EFL78790.1| transcription elongation factor GreB [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306856085|gb|EFM88241.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306869428|gb|EFN01219.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 162

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + QEL++  ++ERP++ +A+SEA A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRGGWQALDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V L  +    K+ Y+IVG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEQGETKQ-YRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGKE+ D I V+ P G+    I ++ +
Sbjct: 120 SIDSPVARALIGKEVDDEIKVDTPLGKSLLYINKIWY 156


>gi|189502128|ref|YP_001957845.1| hypothetical protein Aasi_0733 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|238692311|sp|B3ESB4|GREA_AMOA5 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|189497569|gb|ACE06116.1| hypothetical protein Aasi_0733 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 157

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++K+   T +G  +++ EL   + E R ++ + +SEAR  GDLSENAEY AAKE Q + E
Sbjct: 1   MEKVSYYTEEGLQRLKGELTQLKSEGRAKVAEQLSEARDKGDLSENAEYDAAKEAQEILE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+A+LE ++  A VI+   ++   ++  + V +  K  G    Y +V ++EAD++ G +
Sbjct: 61  RRIAKLEELMINARVINKDNINTSAVSILSKVKIKNKKLGKVSTYTMVSEEEADLKEGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SPI + L+GK+ G++  V AP G+  +EIL + +
Sbjct: 121 SIESPIGKGLLGKKAGEVAIVEAPAGKIEFEILDISF 157


>gi|205374243|ref|ZP_03227042.1| transcription elongation factor GreA [Bacillus coahuilensis m4-4]
          Length = 158

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 96/156 (61%), Gaps = 1/156 (0%)

Query: 2   VDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
            +K+  +T  G +K++ EL   +  +R  +++ I  AR++GDLSEN+EY +AKE Q   E
Sbjct: 3   TEKVYPMTQAGKEKLENELEQLKTVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVE 62

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+  LE +I  A++I    M+ D +  G TV+ VE   G++++Y IVG  EAD   G +
Sbjct: 63  GRIVTLEAMIRNAKIIQEDEMNSDTVTLGKTVTFVELPDGEEESYTIVGSAEADPFEGKI 122

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPIA++L+G+++ D +S+  PGGE    I  + 
Sbjct: 123 SNDSPIAKSLMGRKVEDEVSIQTPGGEMQVRITGIK 158


>gi|146307584|ref|YP_001188049.1| transcription elongation factor GreB [Pseudomonas mendocina ymp]
 gi|145575785|gb|ABP85317.1| transcription elongation factor GreB [Pseudomonas mendocina ymp]
          Length = 165

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 91/151 (60%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL       RP++ +++SEA A GD SENAEY   K++    + R+  L
Sbjct: 15  ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              + + +V+       +++ FGA V++ +++      Y+IVG  E D++ GL+SI SP+
Sbjct: 75  TKRLEKLKVVSDRPSDPNKVYFGAWVTIEDEDGEQ-SRYRIVGPDELDLKQGLISIDSPL 133

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+GK L   + V++P GEKT  I+++ +
Sbjct: 134 ARALVGKPLDAEVRVHSPSGEKTCYIVEIEY 164


>gi|37197158|dbj|BAC92999.1| transcription elongation factor [Vibrio vulnificus YJ016]
          Length = 185

 Score =  130 bits (326), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 2/152 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G++K++QEL +  +E RP I + +S A + GD SENA+Y   K L    + R+  L
Sbjct: 31  ITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDRRVRFL 90

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLVSISSP 125
              +   +++D +     ++ FGA V +  +       ++IVG +E      G +SI SP
Sbjct: 91  SKFLPEVKIVDYAPQQEGKVFFGAWVEIENEAGE-VMKFRIVGPEEIYGDAKGYISIDSP 149

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +ARAL+ KE+ D + V  P G K + I  + +
Sbjct: 150 MARALLKKEVDDEVQVPTPSGIKEWFINSIEY 181


>gi|254521999|ref|ZP_05134054.1| transcription elongation factor GreB [Stenotrophomonas sp. SKA14]
 gi|219719590|gb|EED38115.1| transcription elongation factor GreB [Stenotrophomonas sp. SKA14]
          Length = 168

 Score =  130 bits (326), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 56/151 (37%), Positives = 83/151 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G  +++ EL    +  RP ++KA++ A A GD SENAEY   K+     + R+  L
Sbjct: 15  ITAAGHARLKAELDELWRVRRPEVVKALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+D +      + FGA V L   +SGD   Y+IVG  E D   G +SI SP+
Sbjct: 75  TKRLEALRVVDTTPTDPQAVFFGAWVDLENVDSGDTSRYRIVGPDETDAGLGWISIDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+ K L D  SV  PGG+ T+ ++ V +
Sbjct: 135 ARALLKKRLDDEFSVELPGGQFTFAVIGVEY 165


>gi|269958421|ref|YP_003328208.1| transcription elongation factor GreA [Anaplasma centrale str.
           Israel]
 gi|269848250|gb|ACZ48894.1| transcription elongation factor GreA [Anaplasma centrale str.
           Israel]
          Length = 166

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 71/162 (43%), Positives = 108/162 (66%), Gaps = 6/162 (3%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             + P+T +GF K++ EL   +  ERP+IIK+IS+AR  GDLSENAEY AA+E Q L E 
Sbjct: 6   TTRFPITRRGFQKLEAELEALKS-ERPKIIKSISDARELGDLSENAEYHAARERQGLVES 64

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN----YQIVGDQEADVQS 117
           ++ ELE+  +RAEVID+S +SGD + FGATV++   +          YQIVG+ EAD+  
Sbjct: 65  KIMELESKRSRAEVIDVSELSGDTVMFGATVTVSVYDEQADSTGIMRYQIVGEYEADISK 124

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
            ++SI SP+  +L+G++ GD + V  P G+   Y+I+++ ++
Sbjct: 125 NMISIKSPLVLSLLGRKEGDTVEVKTPRGDYKIYQIIKIEFV 166


>gi|289432606|ref|YP_003462479.1| GreA/GreB family elongation factor [Dehalococcoides sp. GT]
 gi|288946326|gb|ADC74023.1| GreA/GreB family elongation factor [Dehalococcoides sp. GT]
          Length = 266

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 1/155 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KIP+T+ G+ K++ EL   +  +R  +I+ +  A    D+ ENA Y AAKE +   EGR
Sbjct: 112 EKIPMTASGYKKLEDELGILK-VKRIAVIEEMRLAALDKDMRENAPYHAAKEQRGQIEGR 170

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E+ +  AEV + +  +  ++  G TV L +  +G++  Y +V  +E +   G +S 
Sbjct: 171 IKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRISA 230

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SSPI +AL  +  GD I +  P G   Y I  + +
Sbjct: 231 SSPIGKALFNRSKGDNIEIEVPSGTLQYVIEDISF 265


>gi|42523662|ref|NP_969042.1| transcription elongation factor GreA [Bdellovibrio bacteriovorus
           HD100]
 gi|39575869|emb|CAE80035.1| transcription elongation factor GreA [Bdellovibrio bacteriovorus
           HD100]
          Length = 162

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 77/155 (49%), Positives = 108/155 (69%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           DK+P+T +G   +  EL+    EERP +I AI EARA GD+SENAEY+AAKE Q + EGR
Sbjct: 7   DKLPMTIRGKALLDAELKKLLLEERPSVILAIEEARAQGDISENAEYEAAKERQAMIEGR 66

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +AE++  +  A+VID + +  DRI FGA V +V+  S +   YQIVG  EADV+ G++SI
Sbjct: 67  IAEIQGKLAGADVIDTAQIKADRIVFGAFVKIVDTESEETFQYQIVGVDEADVKKGMISI 126

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARALIGK+  D ++V +P G+K +EI+   +
Sbjct: 127 LSPLARALIGKKDSDTVTVQSPKGDKEFEIISFEY 161


>gi|255004667|ref|ZP_05279468.1| transcription elongation factor greA (greA) [Anaplasma marginale
           str. Virginia]
          Length = 172

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 72/162 (44%), Positives = 107/162 (66%), Gaps = 6/162 (3%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             + P+T +GF K++ EL   +  ERP+IIK+IS+AR  GDLSENAEY AA+E Q L E 
Sbjct: 12  TTRFPITRRGFQKLEAELEALKS-ERPKIIKSISDARELGDLSENAEYHAARERQGLVES 70

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN----YQIVGDQEADVQS 117
           ++ ELE+  +RAEVID+S +SGD + FGATV++   +          YQIVG+ EADV  
Sbjct: 71  KIMELESKRSRAEVIDVSELSGDTVMFGATVTVSVYDEQTDSTGVMQYQIVGEYEADVSK 130

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
            ++SI SP+  +L+G+  GD + V  P G+   Y+I+++ ++
Sbjct: 131 NMISIKSPLVLSLLGRREGDSVEVKTPRGDYKIYQIMKIEFV 172


>gi|187925055|ref|YP_001896697.1| transcription elongation factor GreB [Burkholderia phytofirmans
           PsJN]
 gi|187716249|gb|ACD17473.1| transcription elongation factor GreB [Burkholderia phytofirmans
           PsJN]
          Length = 189

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 74/154 (48%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL      +RP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 29  KNYITPAGYRRMRDELLHLIDVDRPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G+     IVG  E D+  G VS  
Sbjct: 89  RFLTKRLDLAEVVDSSKQENVDQVFFGATVEYATQDGETHIVTIVGIDEVDLDIGHVSWI 148

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+  ++GD +++  P G +  +IL V +
Sbjct: 149 SPIARALLKAKVGDTVTLYTPAGPQPIDILDVKY 182


>gi|304310877|ref|YP_003810475.1| Transcription elongation factor [gamma proteobacterium HdN1]
 gi|301796610|emb|CBL44822.1| Transcription elongation factor [gamma proteobacterium HdN1]
          Length = 158

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 89/156 (57%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +D   +T +G+ ++QQEL     +ERP++ K +  A + GD SENA+YQ  K+     + 
Sbjct: 1   MDTNVITPEGYTELQQELDELWYKERPKVTKLVQWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + +  V++ +++   ++ FGA V LV+ +   + +++IVG  E   +   VS
Sbjct: 61  RVRFLRGRLGKLRVVEYNSVQEGKVYFGAWVGLVDVD-DQRLSFRIVGPDEIYGKKNYVS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +++PI RA +GK  GD I+V  P   K +EI  + +
Sbjct: 120 VNAPIVRACLGKSEGDEITVRTPEATKEWEIESIEY 155


>gi|300690932|ref|YP_003751927.1| transcription elongation factor (transcript cleavage factor)
           [Ralstonia solanacearum PSI07]
 gi|299077992|emb|CBJ50633.1| Transcription elongation factor (Transcript cleavage factor)
           [Ralstonia solanacearum PSI07]
          Length = 187

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL      ERP ++  +S A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYITPAGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   I +AEV+D S     D+I FGATV+   ++ GD+    IVG  E D++ G VS 
Sbjct: 89  RFLTRRIEKAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLEKGHVSW 147

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SPIARALI    GD +++  P G +  +IL V +
Sbjct: 148 ISPIARALIKAREGDTVALRTPTGVEQIDILAVTY 182


>gi|32034733|ref|ZP_00134864.1| COG0782: Transcription elongation factor [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126207870|ref|YP_001053095.1| transcription elongation factor GreB [Actinobacillus
           pleuropneumoniae L20]
 gi|126096662|gb|ABN73490.1| transcription elongation factor GreB [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 162

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + QEL++  ++ERP++ +A+SEA A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRSGWQALDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V L  +    K+ Y+IVG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEQGETKQ-YRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+ SP+ARALIGKE+ D I V+ P G+    I ++ +
Sbjct: 120 SLDSPVARALIGKEVDDEIKVDTPLGKSLLYINKIWY 156


>gi|325265886|ref|ZP_08132572.1| transcription elongation factor GreB [Kingella denitrificans ATCC
           33394]
 gi|324982524|gb|EGC18150.1| transcription elongation factor GreB [Kingella denitrificans ATCC
           33394]
          Length = 163

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 2/159 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D  K  +T  G  ++Q EL     +ERP I++ ++ A   GD SEN +Y   K     
Sbjct: 1   MTDTPKNYLTPAGHRRLQDELYQLVHKERPEIVQVVNWAAGNGDRSENGDYLYGKRRMRE 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            + R+  L   +  A V+D  T       F A    +E+  G ++  +IVG+ E D   G
Sbjct: 61  IDRRIRFLTQRLANACVVDPETREATDQVFFAATVTLERGDGSEQVVRIVGEDEIDSAKG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +S  SP+ARALI    GDI+ +N P G +T EIL V +
Sbjct: 121 KISWKSPLARALIKACDGDIVRLNTPEGTETIEILAVEY 159


>gi|270308083|ref|YP_003330141.1| transcription elongation factor [Dehalococcoides sp. VS]
 gi|270153975|gb|ACZ61813.1| transcription elongation factor [Dehalococcoides sp. VS]
          Length = 265

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 85/155 (54%), Gaps = 1/155 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KIP+T+ G+ K++ EL   +  +R  +I+ +  A    D+ ENA Y AAKE +   EGR
Sbjct: 112 EKIPMTASGYKKLEDELSTLKG-KRIEVIEEMRLAAMDKDMRENAPYHAAKEQRGQIEGR 170

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E+ +  AEV + +  +  ++  G TV L +  +G+   Y +V  +E +   G +S 
Sbjct: 171 IKEIEHELKYAEVSEYTDNNTSKVNMGNTVKLRDLKNGECCTYTLVSPKEIEPLKGKISA 230

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SSPI +A+  +  G+ I +  P G   Y I  + +
Sbjct: 231 SSPIGKAVFNRNKGEQIEIEVPSGTLQYIIEDISF 265


>gi|297566642|ref|YP_003685614.1| transcription elongation factor GreA [Meiothermus silvanus DSM
           9946]
 gi|296851091|gb|ADH64106.1| transcription elongation factor GreA [Meiothermus silvanus DSM
           9946]
          Length = 159

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 91/153 (59%), Gaps = 1/153 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           + +T++G  ++Q EL   +  +R  I  A  +A   GDL ENA Y  A+  Q  N+ R++
Sbjct: 7   VYLTAEGLKRLQDELTTLKTVKRQEIAAAFEQAIEEGDLRENAGYDEARRAQWDNDRRIS 66

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE+I+ RA V++    +   +  G +V L E ++G + +  IVG  EADV +G +S  S
Sbjct: 67  ELESILARAVVVEAGNGTPLEVGLGVSVEL-ETDTGARMSLTIVGSHEADVFNGKISNES 125

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+ + L+GK++GD +   +P G ++Y I+++ +
Sbjct: 126 PMGQRLMGKKVGDRVEYPSPKGVQSYTIVELSY 158


>gi|167586480|ref|ZP_02378868.1| transcription elongation factor GreB [Burkholderia ubonensis Bu]
          Length = 187

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 74/154 (48%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL      ERP +++ +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLNLIDAERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G++    IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDIAEVVDASRQENTDQVFFGATVDYATPDGEEHTITIVGIDEVDLDHGHVSWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL+  ++GD +++  P G +  ++L V +
Sbjct: 148 SPVARALLKAKIGDTVTLMTPAGPQPIDVLDVHY 181


>gi|297616355|ref|YP_003701514.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144192|gb|ADI00949.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 158

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K I +T +G  K++ EL   +   R  +   I +A  +GD++EN+EY+ AK  Q   
Sbjct: 1   MSEKEIILTKEGLKKLEDELEHLKSVRRKEVASRIKQAIEFGDITENSEYEDAKNEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE  +  A +I+   +  D ++ G+ V L++  +G +  + +V   E+D +   
Sbjct: 61  EGRILCLEKTLRNARLIEDDDIHTDVVSLGSRVRLLDIATGKEITFTVVASAESDPKQSK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ RA+IGK +   + V  P G KTY I+ + 
Sbjct: 121 ISDESPVGRAIIGKPINSEVEVAVPAGTKTYRIVSIE 157


>gi|325923368|ref|ZP_08185038.1| transcription elongation factor GreB [Xanthomonas gardneri ATCC
           19865]
 gi|325546138|gb|EGD17322.1| transcription elongation factor GreB [Xanthomonas gardneri ATCC
           19865]
          Length = 187

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 81/151 (53%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G  +++ EL    +  RP +++A++ A A GD SENAEY   K+     + R+  L
Sbjct: 34  ITPDGHARLKAELEDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 93

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+D +      + FGA V L + +SGD  +Y++VG  E D   G +SI SP+
Sbjct: 94  SKRLEALRVVDTAPTDPRAVFFGAQVELEDADSGDLLHYRVVGPDETDAGRGWISIDSPL 153

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+ K + D      P G+ T+ ++ V +
Sbjct: 154 ARALLKKRVDDEFEAQLPSGKYTFVVVSVDY 184


>gi|301155419|emb|CBW14885.1| transcription elongation factor [Haemophilus parainfluenzae T3T1]
          Length = 158

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V L ++    K+ Y++VG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEDEEGEVKQ-YRLVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK + D I V  P G+    + ++ +
Sbjct: 120 SIDSPVARALIGKGVDDEIHVETPSGKVVLYVNRIWY 156


>gi|325576611|ref|ZP_08147329.1| transcription elongation factor GreB [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325161174|gb|EGC73289.1| transcription elongation factor GreB [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 158

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V L ++    K+ Y++VG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELEDEEGEVKQ-YRLVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D I V  P G+    + ++ +
Sbjct: 120 SIDSPVARALIGKDVDDEIHVETPSGKVVLYVNRIWY 156


>gi|288925501|ref|ZP_06419434.1| transcription elongation factor GreA [Prevotella buccae D17]
 gi|315606633|ref|ZP_07881644.1| transcription elongation factor GreA [Prevotella buccae ATCC 33574]
 gi|288337717|gb|EFC76070.1| transcription elongation factor GreA [Prevotella buccae D17]
 gi|315251643|gb|EFU31621.1| transcription elongation factor GreA [Prevotella buccae ATCC 33574]
          Length = 155

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 90/151 (59%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+  EL+  +  ERP+   AI+EAR  GDLSEN+EY AAKE Q   E ++  
Sbjct: 3   YMSQEGYDKLVAELKRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINR 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           ++  I  A+++D S +S D +   +TV +    +  K  Y IV + EA+++ G +SI +P
Sbjct: 63  MKTTIAEAKIVDTSRLSADAVQILSTVEMTNMGNKAKMTYTIVSESEANLKEGKISIKTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           IA+ L+ K++GD+  +  P G     I ++ 
Sbjct: 123 IAQGLLNKKVGDVAEIKIPSGTIKLRIDKIT 153


>gi|311747108|ref|ZP_07720893.1| transcription elongation factor GreB [Algoriphagus sp. PR1]
 gi|126578813|gb|EAZ82977.1| transcription elongation factor GreB [Algoriphagus sp. PR1]
          Length = 171

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 12/169 (7%)

Query: 1   MVDKIP------------VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
           M  KIP            +TS+G  K+++E     + ERP +   ++ A + GD SENA+
Sbjct: 1   MRRKIPESTLPKLNRSQLITSEGLQKLKEEHDHLWRVERPDVTAKVAWAASLGDRSENAD 60

Query: 49  YQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV 108
           Y   K+     + R+  L   I   +VI+       ++ FGA V +  +  G K  ++IV
Sbjct: 61  YHYNKKRLREIDNRLRYLRKCIDDFKVIEYHPNQEGKVNFGAWVEIKNEKKGLKNRFRIV 120

Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           G +E       +S+ SP+A++L+GK +GD + V+   G+  ++IL++ +
Sbjct: 121 GYEELIGNKNYISMDSPMAKSLLGKAVGDEVIVSTKLGDFVWKILKIEY 169


>gi|220927851|ref|YP_002504760.1| transcription elongation factor GreA [Clostridium cellulolyticum
           H10]
 gi|219998179|gb|ACL74780.1| transcription elongation factor GreA [Clostridium cellulolyticum
           H10]
          Length = 158

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 89/154 (57%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             ++ +T +G  K+++EL + +  +R  + + I +A ++GD+SEN+EY  AK  Q   EG
Sbjct: 3   AKEVVLTYEGLKKLEEELEFLRGTKRKEVAERIKQALSFGDISENSEYDEAKNEQAQVEG 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +LE+++  A +ID   ++ D ++ G+ V + +    ++  Y IVG  EA+     +S
Sbjct: 63  RIVQLESMLKHARIIDEDEVNTDVVSIGSKVRIFDIEFDEEVEYLIVGSTEANPLKSKIS 122

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+  ALIG   G+ + V  P G   ++IL++
Sbjct: 123 NESPVGAALIGHTKGETVEVQVPDGVLKFKILEI 156


>gi|222528673|ref|YP_002572555.1| transcription elongation factor GreA [Caldicellulosiruptor bescii
           DSM 6725]
 gi|312623018|ref|YP_004024631.1| transcription elongation factor grea [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|222455520|gb|ACM59782.1| transcription elongation factor GreA [Caldicellulosiruptor bescii
           DSM 6725]
 gi|312203485|gb|ADQ46812.1| transcription elongation factor GreA [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 162

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/152 (36%), Positives = 93/152 (61%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  ++ + ++K  +EL   +  +R  + + I  AR++GDLSEN+EY  AK  Q   E R+
Sbjct: 9   KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAALEERI 68

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           A LE +I  A++ID   +S D +  G  V +   ++GD   Y IVG +EAD  +  +S  
Sbjct: 69  AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDIFEYSIVGSKEADPLNFKISDE 128

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+ +AL+GK++GD++ V+ P G+  Y+IL++
Sbjct: 129 SPVGKALMGKKVGDVVEVSVPAGKFRYKILEI 160


>gi|241663543|ref|YP_002981903.1| transcription elongation factor GreB [Ralstonia pickettii 12D]
 gi|240865570|gb|ACS63231.1| transcription elongation factor GreB [Ralstonia pickettii 12D]
          Length = 187

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+++++ EL      ERP ++  +S A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYITPAGYERLRSELMHLIDTERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   I +AEV+D S     D+I FGATV+   +    +    IVG  E D+  G VS 
Sbjct: 89  RFLTRRIEKAEVVDASLQGDNDQIFFGATVTYANQRGE-ETTITIVGTDEVDLDIGHVSW 147

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SPIARALI    GD + +  P G +  +IL+V +
Sbjct: 148 ISPIARALIKAREGDTVPLRTPTGVEQIDILEVKY 182


>gi|145631751|ref|ZP_01787512.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
 gi|144982612|gb|EDJ90158.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
          Length = 158

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V L  +    K+ Y+IVG  E       +
Sbjct: 61  RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEEGETKQ-YRIVGCDEFSPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK L D + V  P G  T  I ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156


>gi|291533674|emb|CBL06787.1| transcription elongation factor GreA [Megamonas hypermegale
           ART12/1]
          Length = 178

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK + +T +G  K++++L + +   R  +   +  A A GDLSEN+EY  AK  Q   
Sbjct: 1   MADKRVVLTEEGLKKLEEKLEYLKSVRRLEVADRLKAAIALGDLSENSEYDDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG +  LE+ I  +E+I     + D +  G TV + +    + + Y IVG  EAD   G 
Sbjct: 61  EGEILTLESQIRNSEIIKADDSNKDVVHLGNTVVIKDMEYDEDETYTIVGSTEADTTEGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  A++GK +G ++ V  P G   Y+I+++ 
Sbjct: 121 ISNESPVGMAILGKTVGTVVQVKVPAGTLEYKIVEIK 157


>gi|147669340|ref|YP_001214158.1| transcription elongation factor GreA [Dehalococcoides sp. BAV1]
 gi|146270288|gb|ABQ17280.1| transcription elongation factor GreA [Dehalococcoides sp. BAV1]
          Length = 266

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 1/155 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KIP+T+ G+ K++ EL   +  +R  +I+ +  A    D+ ENA Y AAKE +   EGR
Sbjct: 112 EKIPMTASGYKKLEDELCILK-VKRIAVIEEMRLAALDKDMRENAPYHAAKEQRGQIEGR 170

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E+ +  AEV + +  +  ++  G TV L +  +G++  Y +V  +E +   G +S 
Sbjct: 171 IKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRISA 230

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SSPI +AL  +  GD I +  P G   Y I  + +
Sbjct: 231 SSPIGKALFNRSKGDNIEIEVPSGTLQYVIEDISF 265


>gi|187929352|ref|YP_001899839.1| transcription elongation factor GreB [Ralstonia pickettii 12J]
 gi|309781794|ref|ZP_07676527.1| transcription elongation factor GreB [Ralstonia sp. 5_7_47FAA]
 gi|187726242|gb|ACD27407.1| transcription elongation factor GreB [Ralstonia pickettii 12J]
 gi|308919435|gb|EFP65099.1| transcription elongation factor GreB [Ralstonia sp. 5_7_47FAA]
          Length = 187

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+++++ EL      ERP ++  +S A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYITPAGYERLRTELMHLIDTERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   I +AEV+D S     D+I FGATV+   +    +K   IVG  E D+  G VS 
Sbjct: 89  RFLTRRIEKAEVVDASLQGDNDQIFFGATVTYANQRGE-EKTITIVGMDEVDLDIGHVSW 147

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SPIARALI   +GD + +  P G +  +IL+V +
Sbjct: 148 ISPIARALIKARVGDTVPLRTPTGVEQIDILEVKY 182


>gi|153853505|ref|ZP_01994885.1| hypothetical protein DORLON_00874 [Dorea longicatena DSM 13814]
 gi|149753660|gb|EDM63591.1| hypothetical protein DORLON_00874 [Dorea longicatena DSM 13814]
          Length = 160

 Score =  129 bits (325), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 88/154 (57%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T  G   ++ EL   +  +R  I + I EAR  GDLSENAEY AAK+ Q   E 
Sbjct: 3   AKKKLLTYAGLKALEDELENLKVVKRREIAQKIKEAREQGDLSENAEYDAAKDEQRDIEA 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I+  AEV+    +  D+I  G TV + +    ++  +++VG  EA+   G +S
Sbjct: 63  RIEELEAILKNAEVVVEDEVDFDKINIGCTVKVFDITFDEEMEFKLVGSTEANSLEGKIS 122

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+ +AL+GK++GD+++V    G   Y++L +
Sbjct: 123 NESPVGQALMGKQIGDVVTVETQAGVMEYKVLDI 156


>gi|332652694|ref|ZP_08418439.1| transcription elongation factor GreA [Ruminococcaceae bacterium
           D16]
 gi|332517840|gb|EGJ47443.1| transcription elongation factor GreA [Ruminococcaceae bacterium
           D16]
          Length = 157

 Score =  129 bits (325), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 96/156 (61%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +  +T +   ++Q EL + +      + + I EAR++GDLSEN+EY  AK  Q    
Sbjct: 1   MAKEYKLTPQRLQELQDELVYLKTVREKEVAELIKEARSFGDLSENSEYDEAKTEQGKLY 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+AE+E I++   VID S   G+ +  G+TV++++K   ++  Y+IVG QEAD  +G++
Sbjct: 61  SRIAEVEEILSNYVVIDESDDGGNYVRIGSTVTVLDKEFDEELVYKIVGSQEADPMNGVI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SP  RAL+GK +GD + V+AP G   Y++L+V 
Sbjct: 121 SEDSPFGRALLGKNVGDDVVVDAPAGSVEYKLLKVE 156


>gi|237748857|ref|ZP_04579337.1| transcription elongation factor and transcript cleavage
           [Oxalobacter formigenes OXCC13]
 gi|229380219|gb|EEO30310.1| transcription elongation factor and transcript cleavage
           [Oxalobacter formigenes OXCC13]
          Length = 184

 Score =  129 bits (325), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 74/154 (48%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G   ++ EL     +ERP++++ +S A + GD SEN +Y   K      + R+
Sbjct: 27  KNYITPAGLKSLKDELLSLIDKERPQVVQIVSWAASNGDRSENGDYIYGKRRLREIDRRI 86

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   I  AE  D S   G+   F       E+  G++    IVG  E D   G +S  
Sbjct: 87  RFLIKRIEAAEEFDPSIHYGNDQIFFGATVTYEREDGEENTITIVGIDEFDPLEGRISWI 146

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+A+ LI    GD ++++ P G +   IL+V +
Sbjct: 147 SPMAKTLIKAREGDTVTLHTPAGIEELVILEVNY 180


>gi|300931063|ref|ZP_07146417.1| transcription elongation factor GreB [Escherichia coli MS 187-1]
 gi|300461083|gb|EFK24576.1| transcription elongation factor GreB [Escherichia coli MS 187-1]
          Length = 170

 Score =  129 bits (325), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++KI+QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 13  MKTPLVTREGYEKIKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 72

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 73  RVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 131

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ +  + ++
Sbjct: 132 IDSPMARALLKKEVGDLAVVNTPAGEASWYVNAIEYV 168


>gi|116627175|ref|YP_819794.1| transcription elongation factor GreA [Streptococcus thermophilus
           LMD-9]
 gi|122268222|sp|Q03MH4|GREA_STRTD RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|116100452|gb|ABJ65598.1| transcription elongation factor GreA [Streptococcus thermophilus
           LMD-9]
          Length = 160

 Score =  129 bits (325), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T     +++ EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYVMTLAEKKQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG++  LE  I  AE++D   ++ D +A G TV + E  + DK  Y IVG   AD+ SG 
Sbjct: 61  EGQIQILETKIRYAEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK++GD +++ +P G  + EIL V 
Sbjct: 121 ISNESPIAQALIGKKVGDKVAIESPAGSYSVEILSVE 157


>gi|229846659|ref|ZP_04466767.1| transcription elongation factor GreB [Haemophilus influenzae
           7P49H1]
 gi|229810752|gb|EEP46470.1| transcription elongation factor GreB [Haemophilus influenzae
           7P49H1]
 gi|309972280|gb|ADO95481.1| Transcription elongation factor GreB [Haemophilus influenzae R2846]
          Length = 162

 Score =  129 bits (325), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G++++ QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWNELDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V L  +    K+ Y+IVG  E       +
Sbjct: 61  RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEEGEIKQ-YRIVGCDEFAPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK L D + V  P G  T  I ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156


>gi|152997778|ref|YP_001342613.1| transcription elongation factor GreB [Marinomonas sp. MWYL1]
 gi|150838702|gb|ABR72678.1| transcription elongation factor GreB [Marinomonas sp. MWYL1]
          Length = 196

 Score =  129 bits (325), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G   +  EL++  +E+RP + + + EA A GD SENAEY   K+     + R+  
Sbjct: 41  YITQEGAQALLAELKYLWKEKRPAVTETVREAAAQGDRSENAEYIYGKKQLREIDRRVRY 100

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  +    V+D      +R+ FGA V+L ++    K  Y+IVG  E D  S  +SI SP
Sbjct: 101 LEKRLEVCTVVDRFPSDQERVFFGAWVTLEDEAGNLK-EYRIVGPDELDHHSSYISIDSP 159

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +ARAL+ K+ GD + +   GGEKTY I  V +
Sbjct: 160 VARALLKKQEGDEVVIRLAGGEKTYIIDAVEY 191


>gi|260886921|ref|ZP_05898184.1| transcription elongation factor GreA [Selenomonas sputigena ATCC
           35185]
 gi|330839288|ref|YP_004413868.1| transcription elongation factor GreA [Selenomonas sputigena ATCC
           35185]
 gi|260863350|gb|EEX77850.1| transcription elongation factor GreA [Selenomonas sputigena ATCC
           35185]
 gi|329747052|gb|AEC00409.1| transcription elongation factor GreA [Selenomonas sputigena ATCC
           35185]
          Length = 156

 Score =  129 bits (325), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T +G+ K+Q++L + +   R  + + +  A A GDLSEN+EY  AK  Q   
Sbjct: 1   MAEKRVMLTEEGYKKLQEKLDYLKSVRRIEVSERLKAAIALGDLSENSEYDDAKNEQAFL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG + +LE  I  +++I     S      G+TV + +    +++ Y +VG  EAD     
Sbjct: 61  EGEILDLEAKIRNSDIIQGGASSDTV-QMGSTVVVKDVEFDEQETYTLVGSAEADPTEFK 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  A+IGK++GD + V+AP G   YE++++ 
Sbjct: 120 ISNESPVGAAIIGKKVGDRVDVHAPAGIIQYEVVEIK 156


>gi|323343448|ref|ZP_08083675.1| transcription elongation factor GreA [Prevotella oralis ATCC 33269]
 gi|323095267|gb|EFZ37841.1| transcription elongation factor GreA [Prevotella oralis ATCC 33269]
          Length = 155

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/151 (37%), Positives = 90/151 (59%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+  ELR  +  ERP+   AI+EAR  GDLSEN+EY AAKE Q   E ++  
Sbjct: 3   YMSQEGYDKLVAELRQLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINR 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I  A+++D S +S D +   + V +    +  K +Y IV + EAD++ G +SI +P
Sbjct: 63  LKLTIAEAKIVDTSRLSTDAVQILSKVDMTNMTTKSKMSYTIVSESEADLKQGKISIKTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           IA+ L+ K++GD + +  P G     I ++ 
Sbjct: 123 IAQGLLNKKVGDEVEIKIPRGVIRLRIDKIT 153


>gi|165975847|ref|YP_001651440.1| transcription elongation factor GreB [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307256431|ref|ZP_07538213.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|165875948|gb|ABY68996.1| transcription elongation factor [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|306865061|gb|EFM96962.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 162

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + QEL++  ++ERP++ +A+SEA A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V L  +    K+ Y+IVG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEQGETKQ-YRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGKE+ D I V+ P G+    I ++ +
Sbjct: 120 SIDSPVARALIGKEVDDEIKVDTPLGKSLLYINKIWY 156


>gi|207723815|ref|YP_002254213.1| transcription elongation factor (transcript cleavage factor)
           protein [Ralstonia solanacearum MolK2]
 gi|206589020|emb|CAQ35982.1| transcription elongation factor (transcript cleavage factor)
           protein [Ralstonia solanacearum MolK2]
          Length = 187

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL      ERP ++  +S A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYITPTGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   I RAEV+D S     D+I FGATV+   ++ GD+    IVG  E D+  G VS 
Sbjct: 89  RFLTRRIERAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLDKGYVSW 147

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SPIARALI    GD +++  P G    +IL V +
Sbjct: 148 ISPIARALIKAREGDTVALRTPTGVAQIDILAVTY 182


>gi|55820339|ref|YP_138781.1| transcription elongation factor GreA [Streptococcus thermophilus
           LMG 18311]
 gi|55822230|ref|YP_140671.1| transcription elongation factor GreA [Streptococcus thermophilus
           CNRZ1066]
 gi|81559864|sp|Q5M1J6|GREA_STRT1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|81561040|sp|Q5M638|GREA_STRT2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|55736324|gb|AAV59966.1| transcription elongation factor [Streptococcus thermophilus LMG
           18311]
 gi|55738215|gb|AAV61856.1| transcription elongation factor [Streptococcus thermophilus
           CNRZ1066]
 gi|312277654|gb|ADQ62311.1| Transcription elongation factor greA [Streptococcus thermophilus
           ND03]
          Length = 160

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T     +++ EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYVMTLAEKKQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG++  LE  I  AE++D   ++ D +A G TV + E  + DK  Y IVG   AD+ SG 
Sbjct: 61  EGQIQILETKIRYAEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK++GD +++ +P G  + EIL V 
Sbjct: 121 ISNESPIAQALIGKKVGDKVAIESPAGSYSVEILSVE 157


>gi|83748900|ref|ZP_00945911.1| GreB [Ralstonia solanacearum UW551]
 gi|207743760|ref|YP_002260152.1| transcription elongation factor (transcript cleavage factor)
           protein [Ralstonia solanacearum IPO1609]
 gi|300703579|ref|YP_003745181.1| transcription elongation factor (transcript cleavage factor)
           [Ralstonia solanacearum CFBP2957]
 gi|83724466|gb|EAP71633.1| GreB [Ralstonia solanacearum UW551]
 gi|206595159|emb|CAQ62086.1| transcription elongation factor (transcript cleavage factor)
           protein [Ralstonia solanacearum IPO1609]
 gi|299071242|emb|CBJ42560.1| Transcription elongation factor (Transcript cleavage factor)
           [Ralstonia solanacearum CFBP2957]
          Length = 187

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL      ERP ++  +S A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYITPTGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   I RAEV+D S     D+I FGATV+   ++ GD+    IVG  E D+  G VS 
Sbjct: 89  RFLTRRIERAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLDKGYVSW 147

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SPIARALI    GD +++  P G    +IL V +
Sbjct: 148 ISPIARALIKAREGDTVALRTPTGVAQIDILAVTY 182


>gi|317505048|ref|ZP_07962995.1| transcription elongation factor GreA [Prevotella salivae DSM 15606]
 gi|315663826|gb|EFV03546.1| transcription elongation factor GreA [Prevotella salivae DSM 15606]
          Length = 156

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 92/150 (61%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+  EL+  +  ERP+   AI+EAR  GDLSEN+EY AAKE Q   E ++ +
Sbjct: 3   YMSQEGYDKLVAELKRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLESKINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           ++  I  A+++D+S +S D +   + V +   ++  K  Y IV + EA+++ G +SI +P
Sbjct: 63  MKLDIAEAKIVDVSRLSADAVQIMSKVEMTNMSNKSKMVYTIVSESEANLKQGKISIKTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+  ++GD++ V  P G     I ++
Sbjct: 123 IAQGLLNHKVGDVVEVQIPRGIIKLRIDKI 152


>gi|299066253|emb|CBJ37437.1| Transcription elongation factor (Transcript cleavage factor)
           [Ralstonia solanacearum CMR15]
          Length = 187

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL      ERP ++  +S A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYITPAGYTRLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   I RAEV+D S     D+I FGATV+   +  GD+    IVG  E D+  G VS 
Sbjct: 89  RFLTRRIERAEVVDASLQGDNDQIFFGATVTYANQG-GDETTITIVGMDEVDLDKGQVSW 147

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SPIARALI    GD +++  P G ++ +IL V +
Sbjct: 148 ISPIARALIKAREGDTVALRTPTGVESIDILAVTY 182


>gi|190571574|ref|YP_001975932.1| transcription elongation factor GreA [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213018976|ref|ZP_03334783.1| transcription elongation factor GreA [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190357846|emb|CAQ55302.1| transcription elongation factor GreA [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995085|gb|EEB55726.1| transcription elongation factor GreA [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 164

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/160 (45%), Positives = 111/160 (69%), Gaps = 4/160 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           +V+K P+T +GF+ +Q EL   ++E+ P II+AIS+AR  GDLSENAEY AA+E  +  E
Sbjct: 5   IVNKFPITREGFESMQVELEKLKEEK-PSIIQAISDARDQGDLSENAEYHAARERLSFIE 63

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLV---EKNSGDKKNYQIVGDQEADVQS 117
           GR+ E+E+ ++ AEVI++  +SGD + FGATV++    + NS  +  Y+IVG  EAD   
Sbjct: 64  GRIIEVESKLSHAEVIEVKNLSGDTVMFGATVTVSMLGDDNSEIEYVYKIVGGYEADASK 123

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            L+S  SP+  ALIGK++G+ + V  P GEK Y+I+++ +
Sbjct: 124 QLISTDSPLGSALIGKKVGEYVEVIVPNGEKLYKIVKIEF 163


>gi|113461635|ref|YP_719704.1| transcription elongation factor GreB [Haemophilus somnus 129PT]
 gi|112823678|gb|ABI25767.1| transcription elongation factor GreB [Haemophilus somnus 129PT]
          Length = 158

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G++ + QEL++  ++ERP+I +A+S+A A GD SENAEY   K      +
Sbjct: 1   MPKSNYITRSGWNILDQELKYLWKDERPKITQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V+L ++    +K Y+IVG  E D     +
Sbjct: 61  RRVRFLMKRLEVLQIVDYNPKQEGKVFFGAWVALEDEQGE-EKQYRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGKE+ D I V  P G  +  I ++ +
Sbjct: 120 SIDSPVARALIGKEVDDEIKVATPSGIVSLYINKIWY 156


>gi|330808345|ref|YP_004352807.1| GreA-GreB family transcriptional regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327376453|gb|AEA67803.1| putative Transcription factor, GreA-GreB family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 165

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ E        RP++ +A+SEA A GD SENAEY   K++    + R+  L
Sbjct: 15  ITPEGEARMRAEFHELWHVRRPQVTQAVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +   +V+       +++ FGA V++ +++ G +  Y+IVG  E D++  L+SI SP+
Sbjct: 75  TKRLEALKVVSEKPSDPNKVYFGAWVTVEDED-GKESRYRIVGPDELDLKQNLISIDSPL 133

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARALIGK L   +SV  P GEK   I+ + +
Sbjct: 134 ARALIGKALDAEVSVQTPTGEKRVYIVDIAY 164


>gi|169335600|ref|ZP_02862793.1| hypothetical protein ANASTE_02015 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258338|gb|EDS72304.1| hypothetical protein ANASTE_02015 [Anaerofustis stercorihominis DSM
           17244]
          Length = 157

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK + ++ KG+ +++++L + +  +R  +   I  AR +GDLSENAEY  AK+ Q   
Sbjct: 1   MADKEVILSKKGYKELEEKLNYLKDVKRHEVASKIKAAREFGDLSENAEYDEAKQEQGFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG + E+E  +  A + D +  +   ++ G+ V + + +  ++  Y IVG +E D+ +  
Sbjct: 61  EGEIREIEYKLKNAVIFDDANKASGVVSLGSDVKVYDTDFDEEVVYTIVGSEEVDLDNNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPI  AL+GK++G+I  V  P G    +IL+V 
Sbjct: 121 ISNESPIGSALLGKKVGEIAKVQVPDGIVDLKILEVK 157


>gi|15644454|ref|NP_229506.1| transcription elongation factor GreA [Thermotoga maritima MSB8]
 gi|7387720|sp|Q9X232|GREA_THEMA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|4982283|gb|AAD36773.1|AE001810_12 transcription elongation factor, greA/greB family [Thermotoga
           maritima MSB8]
          Length = 156

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+ +T +G++K+++EL   +++    I + I EAR  GDLSEN+EY+AAK  Q     
Sbjct: 1   MKKVRLTREGYEKLKKELEDLKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ E+E I++ AE+I+ S  S +    G  V +   ++G++  ++IV  QEAD  +  +S
Sbjct: 61  RIMEIEQILSNAEIIEDSEESDEVT-LGKWVVIKNLDTGEEHKFRIVTPQEADFFAQKLS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+ ++L+G+++GD++ V AP G + Y+++ V
Sbjct: 120 SDSPLGKSLLGRKVGDVVKVKAPSGVQRYQVIAV 153


>gi|238922488|ref|YP_002936001.1| transcription elongation factor GreA [Eubacterium rectale ATCC
           33656]
 gi|238874160|gb|ACR73867.1| transcription elongation factor GreA [Eubacterium rectale ATCC
           33656]
          Length = 185

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 92/154 (59%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            K  +T  G  K++ EL   +  +R  + + I EAR  GDLSENAEY AAK+ Q   E R
Sbjct: 27  KKNILTYAGLKKLEDELEQLKVVKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEAR 86

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E I+  AEV+    +  D+I+ G  + +++    ++  Y+IVG  EA+   G +S 
Sbjct: 87  IEEIEKILKNAEVVVEEEVDLDKISIGCKIRILDCEFDEELEYKIVGSTEANSLKGKISN 146

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +AL+GK++GD ++V    GE TY++L++ 
Sbjct: 147 ESPVGKALLGKKVGDTVTVETQVGELTYKVLEIQ 180


>gi|261341905|ref|ZP_05969763.1| transcription elongation factor GreB [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315808|gb|EFC54746.1| transcription elongation factor GreB [Enterobacter cancerogenus
           ATCC 35316]
          Length = 157

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K+++E+ +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + GD   ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCLEHLKIVDYSPQQEGKVFFGAWVEIENDD-GDTLRFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  V  PGGE ++ + ++ ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVQTPGGEASWYVNEIEYV 156


>gi|304440038|ref|ZP_07399931.1| transcription elongation factor GreA [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371530|gb|EFM25143.1| transcription elongation factor GreA [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 164

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 90/155 (58%), Gaps = 1/155 (0%)

Query: 2   VDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++K I  T +G +KI+ E+ + +   R  + + I  A  YGDLSEN+EY  AK  Q   E
Sbjct: 8   MEKDIFFTPEGLEKIENEIEFLKTVRRKEVAERIKIALGYGDLSENSEYDEAKNEQAQVE 67

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ +LEN++  A VI+   ++ + +  G+TVS+ + NS  +  Y IVG  E+    G +
Sbjct: 68  ERIVKLENMVRNAVVIESDDLNTEIVNIGSTVSVKDINSDKESTYTIVGSAESSPLEGKI 127

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SP+   LIGK++GD++ +  P G  T EI+ +
Sbjct: 128 SNESPVGSGLIGKKIGDVVDIEVPKGTITLEIMNI 162


>gi|303249748|ref|ZP_07335952.1| transcription elongation factor GreB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251936|ref|ZP_07533837.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651315|gb|EFL81467.1| transcription elongation factor GreB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860628|gb|EFM92640.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 162

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + QEL++  ++ERP++ +A+SEA A GD SENAEY   K      +
Sbjct: 1   MTKSNYITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V L  +    K+ Y+IVG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEQGETKQ-YRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGKE+ D I V+ P G+    I ++ +
Sbjct: 120 SIDSPVARALIGKEVDDEIKVDTPLGKSLLYINKIWY 156


>gi|145635344|ref|ZP_01791046.1| transcription elongation factor GreB [Haemophilus influenzae
           PittAA]
 gi|145637929|ref|ZP_01793571.1| transcription elongation factor GreB [Haemophilus influenzae
           PittHH]
 gi|145267350|gb|EDK07352.1| transcription elongation factor GreB [Haemophilus influenzae
           PittAA]
 gi|145268869|gb|EDK08830.1| transcription elongation factor GreB [Haemophilus influenzae
           PittHH]
          Length = 162

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V L  +    K+ Y+IVG  E       +
Sbjct: 61  RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEEGEIKQ-YRIVGCDEFAPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK L D + V  P G  T  I ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156


>gi|253690269|ref|YP_003019459.1| transcription elongation factor GreB [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251756847|gb|ACT14923.1| transcription elongation factor GreB [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 163

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+DK++ E       +RP I K +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTNLITREGYDKLRAEHDHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-QSGLV 120
           R+  L   +T  +++D S      + FGA V +  +    K   +IVG  E        +
Sbjct: 61  RVRYLRKCLTELKIVDYSPQQDGSVFFGAWVEIENEQGDVK-RLRIVGPDEIYGDNKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI SP+ARA++ K + +  +VN P G + + +  + ++
Sbjct: 120 SIDSPMARAMLKKAVDEEFTVNTPDGPREWFVNSIDYV 157


>gi|262163952|ref|ZP_06031691.1| transcription elongation factor GreA [Vibrio mimicus VM223]
 gi|262172290|ref|ZP_06039968.1| transcription elongation factor GreA [Vibrio mimicus MB-451]
 gi|261893366|gb|EEY39352.1| transcription elongation factor GreA [Vibrio mimicus MB-451]
 gi|262027480|gb|EEY46146.1| transcription elongation factor GreA [Vibrio mimicus VM223]
          Length = 157

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/158 (44%), Positives = 116/158 (73%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G +K+ +E   R  + RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTVRG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M    ++ FG+TV++++ N+ ++K YQIVGD EAD++SG +
Sbjct: 60  QIRDIEYKLSVAQVIDVTGMDNSGKVIFGSTVTVIDVNTDEEKTYQIVGDDEADIKSGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK  GD +++  PGG+K +EI +V ++
Sbjct: 120 SVNSPIARGLIGKFEGDEVAIATPGGDKVFEIDRVEYL 157


>gi|71906765|ref|YP_284352.1| transcription elongation factor GreB [Dechloromonas aromatica RCB]
 gi|71846386|gb|AAZ45882.1| transcription elongation factor GreB [Dechloromonas aromatica RCB]
          Length = 185

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 76/154 (49%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T  G D+++ EL    + ERP +++ +S A + GD SEN +Y   K      + R+
Sbjct: 28  RNYITPAGHDRLKSELEHLVKRERPHVVEIVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEVID      +   F      +   +G    Y IVG  E DV  G +S  
Sbjct: 88  RFLTKRLDVAEVIDPLRQGDNDQIFFGATVTIAGINGVANTYTIVGVDETDVSRGRISWI 147

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARALI    GD I   +P G +  +IL+V++
Sbjct: 148 SPLARALIKSREGDSIRFQSPLGVREIDILEVVY 181


>gi|327395566|dbj|BAK12988.1| transcription elongation factor GreB [Pantoea ananatis AJ13355]
          Length = 158

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 83/157 (52%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +GF+ ++ EL    +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MRTRLITREGFNTLKAELDHLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   I +  ++D S     ++ FGA V +   +   K  ++IVG  E   +   +S
Sbjct: 61  RVRYLSKSIEQLRIVDYSPQQDGKVFFGAWVEVENDDGDVK-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ K +GD   V  P G   + + ++ ++
Sbjct: 120 IDSPMARALLKKAVGDAAVVETPAGPACWYVNEISYV 156


>gi|325928883|ref|ZP_08190046.1| transcription elongation factor GreB [Xanthomonas perforans 91-118]
 gi|325540744|gb|EGD12323.1| transcription elongation factor GreB [Xanthomonas perforans 91-118]
          Length = 198

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 84/152 (55%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL    +  RP +++A++ A A GD SENAEY   K+     + R+  L
Sbjct: 45  ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 104

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+D +    + + FGA V L + +SG+   Y+IVG  E D   G +SI SP+
Sbjct: 105 SKRLEALRVVDTAPTDANAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 164

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ARAL+ K + D    + P G+ T+ ++ V ++
Sbjct: 165 ARALLKKRVDDEFDAHLPAGKHTFVVVSVQYV 196


>gi|322373858|ref|ZP_08048393.1| transcription elongation factor GreA [Streptococcus sp. C150]
 gi|321277230|gb|EFX54300.1| transcription elongation factor GreA [Streptococcus sp. C150]
          Length = 160

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T    ++++ EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYVMTLAEKEQLEAELEEYKLVRRPEVVERIKVARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG++  LE  I  AE++D   ++ D +A G TV + E  + DK  Y IVG   AD+ SG 
Sbjct: 61  EGQIQILETKIRYAEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK++GD +++ +P G  + EIL V 
Sbjct: 121 ISNESPIAQALIGKKVGDKVAIESPAGSYSVEILSVE 157


>gi|260582727|ref|ZP_05850514.1| transcription elongation factor GreB [Haemophilus influenzae NT127]
 gi|260094177|gb|EEW78078.1| transcription elongation factor GreB [Haemophilus influenzae NT127]
          Length = 162

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V L  +    K+ Y+IVG  E       +
Sbjct: 61  RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEEGETKQ-YRIVGCDEFSPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK L D + V  P G  T  + ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156


>gi|146282377|ref|YP_001172530.1| transcription elongation factor GreB [Pseudomonas stutzeri A1501]
 gi|145570582|gb|ABP79688.1| transcription elongation factor GreB [Pseudomonas stutzeri A1501]
          Length = 172

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/151 (32%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL       RP++ +++SEA A GD SENAEY   K++    + R+  L
Sbjct: 22  ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 81

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              + + +V+       +++ FGA V+L +++      Y+IVG  E D++ G++SI SP+
Sbjct: 82  TKRLEKLKVVRERPSDPNKVYFGAWVTLEDEDGEQ-ARYRIVGPDELDLRQGMISIDSPL 140

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+GK L   + V  P G K + ++ + +
Sbjct: 141 ARALVGKALDAEVQVQTPTGTKLWYVVAIDY 171


>gi|77460238|ref|YP_349745.1| transcription elongation factor GreB [Pseudomonas fluorescens
           Pf0-1]
 gi|77384241|gb|ABA75754.1| transcription elongation factor [Pseudomonas fluorescens Pf0-1]
          Length = 165

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 89/151 (58%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL       RP++ +++SEA A GD SENAEY   K++    + R+  L
Sbjct: 15  ITPEGEARMRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  ++V+       +++ FGA V++ +++ G +  Y+IVG  E D++ GL+SI SP+
Sbjct: 75  TKRLEASKVVSEKPSDPNKVYFGAWVTIEDED-GKQSRYRIVGPDELDLKLGLISIDSPL 133

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARALIGK L   + V  P GE+   I+ + +
Sbjct: 134 ARALIGKALDAEVRVQTPTGEQFVYIVAIEY 164


>gi|78048442|ref|YP_364617.1| transcription elongation factor GreB [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036872|emb|CAJ24565.1| transcription elongation factor [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 168

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 84/152 (55%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL    +  RP +++A++ A A GD SENAEY   K+     + R+  L
Sbjct: 15  ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+D +    + + FGA V L + +SG+   Y+IVG  E D   G +SI SP+
Sbjct: 75  SKRLEALRVVDTAPTDANAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ARAL+ K + D    + P G+ T+ ++ V ++
Sbjct: 135 ARALLKKRVDDEFDAHLPAGKHTFVVVSVQYV 166


>gi|291526253|emb|CBK91840.1| transcription elongation factor GreA [Eubacterium rectale DSM
           17629]
 gi|291526764|emb|CBK92350.1| transcription elongation factor GreA [Eubacterium rectale M104/1]
          Length = 162

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 92/154 (59%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            K  +T  G  K++ EL   +  +R  + + I EAR  GDLSENAEY AAK+ Q   E R
Sbjct: 4   KKNILTYAGLKKLEDELEQLKVVKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E I+  AEV+    +  D+I+ G  + +++    ++  Y+IVG  EA+   G +S 
Sbjct: 64  IEEIEKILKNAEVVVEEEVDLDKISIGCKIRILDCEFDEELEYKIVGSTEANSLKGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +AL+GK++GD ++V    GE TY++L++ 
Sbjct: 124 ESPVGKALLGKKVGDTVTVETQVGELTYKVLEIQ 157


>gi|260583976|ref|ZP_05851724.1| transcription elongation factor GreA [Granulicatella elegans ATCC
           700633]
 gi|260158602|gb|EEW93670.1| transcription elongation factor GreA [Granulicatella elegans ATCC
           700633]
          Length = 159

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K+  +T +G  K++ EL   +  +R  I++ I  AR+YGDLSEN+EY++AK+ Q   
Sbjct: 1   MTEKLYPMTLEGKAKLEAELEELKVVKRKEIVERIKIARSYGDLSENSEYESAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE +I  AE+ID + +  D ++ G  ++ +E   G++++Y IVG  EA+   G 
Sbjct: 61  EGRITTLEKMIRFAEIIDDNNVEKDVVSLGRKITFIELPDGEEESYTIVGSAEANPIEGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ +IGK+L D + +  PGG+   +I ++ 
Sbjct: 121 ISNDSPIAKGIIGKKLNDEVVIQTPGGDMKVKITKIE 157


>gi|298373336|ref|ZP_06983325.1| transcription elongation factor GreA [Bacteroidetes oral taxon 274
           str. F0058]
 gi|298274388|gb|EFI15940.1| transcription elongation factor GreA [Bacteroidetes oral taxon 274
           str. F0058]
          Length = 156

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 91/154 (59%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  + +T  G+ K+  E+   +  +R  I   I+EAR  GDLSENAEY AAKE Q + E 
Sbjct: 1   MAVVYMTEDGYKKLADEIAQMEAVDRKAISAQIAEARDKGDLSENAEYDAAKEAQGMLEM 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++A+++  +  A +ID S +  D +    TV +    +  +  Y +V + EA+++ G ++
Sbjct: 61  KIAQMKETLANARIIDESKLKTDSVQILNTVRVKNLANKQEMTYTLVSENEANIREGKLA 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           I++PI + L+GK++G++  +N P G   +E++ +
Sbjct: 121 INTPIGKGLLGKKIGEVAEINVPAGLMRFEVVSI 154


>gi|241764061|ref|ZP_04762099.1| transcription elongation factor GreB [Acidovorax delafieldii 2AN]
 gi|241366592|gb|EER61073.1| transcription elongation factor GreB [Acidovorax delafieldii 2AN]
          Length = 187

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T++G+ ++++EL      ERP+++  +  A + GD SEN +Y   K+     + R+
Sbjct: 27  KNYMTAQGYARLREELLELIDTERPKMVDIVHWAASNGDRSENGDYLYGKKRLREIDRRI 86

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D S     D++ FGATV+ +E   G ++   I+G  EAD + G VS 
Sbjct: 87  RFLTKRLEIAEVVDPSLHDGSDQVFFGATVTYLENG-GTERTITILGIDEADSRQGQVSW 145

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+   +GD IS+ +PGG    E+L V +
Sbjct: 146 MSPVARALLKSRVGDEISMGSPGGVLLLEVLNVRY 180


>gi|145640545|ref|ZP_01796129.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
 gi|145642261|ref|ZP_01797826.1| transcription elongation factor GreB [Haemophilus influenzae R3021]
 gi|145273017|gb|EDK12898.1| transcription elongation factor GreB [Haemophilus influenzae
           22.4-21]
 gi|145275131|gb|EDK14993.1| transcription elongation factor GreB [Haemophilus influenzae
           22.4-21]
          Length = 162

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  +EERP++ +A+S+A A GD SENAEY  +K      +
Sbjct: 1   MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYSKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V L  +    K+ Y+IVG  E       +
Sbjct: 61  RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEEGETKQ-YRIVGCDEFAPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK L D + V  P G  T  I ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156


>gi|134298052|ref|YP_001111548.1| transcription elongation factor GreA [Desulfotomaculum reducens
           MI-1]
 gi|134050752|gb|ABO48723.1| transcription elongation factor GreA [Desulfotomaculum reducens
           MI-1]
          Length = 158

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 1/156 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T  G  +++ EL   +  +R ++ + I +A  +GD+SEN+EY+ AK  Q   
Sbjct: 1   MKEKDVMLTVTGLKQLEDELEQLKTVKRRQVAERIKQAIEFGDISENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A++ID   +  + ++ G+ V L +   GD+  Y IVG  EAD  +  
Sbjct: 61  EGRILTLEKMLRNAKIIDDENLDNEVVSLGSKVILKDLEFGDELEYSIVGSVEADPDANK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SP+ RA++G+  G ++ VN P G   YEI+ +
Sbjct: 121 ISNESPVGRAILGQSKGSVVEVNVPAGILKYEIVDI 156


>gi|282880637|ref|ZP_06289343.1| putative transcription elongation factor GreA [Prevotella
           timonensis CRIS 5C-B1]
 gi|281305532|gb|EFA97586.1| putative transcription elongation factor GreA [Prevotella
           timonensis CRIS 5C-B1]
          Length = 155

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 89/150 (59%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+D +  EL   +  ERP+   AI+EAR  GDLSEN+EY AAKE Q   E ++ +
Sbjct: 3   YMSQEGYDNLVAELNRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           ++  I  A+++D+S +S + +   + V +    +  K  Y IV + EAD+++G +SI +P
Sbjct: 63  MKLTIAEAKIVDVSRLSANMVQILSKVEMTNLKTKSKMTYTIVSESEADLKAGKISIKTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+ K++GD + +  P G     I  +
Sbjct: 123 IAQGLLNKKVGDEVEIKIPAGTIHLRIDNI 152


>gi|296105101|ref|YP_003615247.1| transcription elongation factor GreB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295059560|gb|ADF64298.1| transcription elongation factor GreB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 157

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K+++E+ +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G+   ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDD-GNTLRFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  V  P GE ++ + ++ ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVQTPAGEASWYVNEITYV 156


>gi|251793288|ref|YP_003008016.1| transcription elongation factor GreB [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534683|gb|ACS97929.1| transcription elongation factor GreB [Aggregatibacter aphrophilus
           NJ8700]
          Length = 159

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G++ + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWNVLDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D S     +I FGA V L  ++   K+ Y++VG  E D     +
Sbjct: 61  RRVRFLTKRLEVLQIVDYSPKQEGKIFFGAWVELENEDGEVKQ-YRLVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGKE  D I+V+ P G+    + ++ +
Sbjct: 120 SIDSPVARALIGKEEEDEITVDTPSGKIQLYVNRIWY 156


>gi|312864022|ref|ZP_07724258.1| transcription elongation factor GreA [Streptococcus vestibularis
           F0396]
 gi|322517498|ref|ZP_08070370.1| transcription elongation factor GreA [Streptococcus vestibularis
           ATCC 49124]
 gi|311100435|gb|EFQ58642.1| transcription elongation factor GreA [Streptococcus vestibularis
           F0396]
 gi|322123874|gb|EFX95437.1| transcription elongation factor GreA [Streptococcus vestibularis
           ATCC 49124]
          Length = 160

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T    ++++ EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYVMTLAEKEQLEAELEEYKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG++  LE  I  AE++D   ++ D +A G TV + E  + DK  Y IVG   AD+ SG 
Sbjct: 61  EGQIQILETKIRYAEIVDSDAVANDEVAIGKTVVVQEVGTSDKDTYHIVGAAGADIFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK++GD +++ +P G  + EIL V 
Sbjct: 121 ISNESPIAQALIGKKVGDKVAIESPAGSYSVEILSVE 157


>gi|59710728|ref|YP_203504.1| transcription elongation factor GreB [Vibrio fischeri ES114]
 gi|59478829|gb|AAW84616.1| transcription elongation factor [Vibrio fischeri ES114]
          Length = 157

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +GF+K+Q EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTNLITREGFNKLQDELTFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + + +V+D S     +I FGA V +  +  GD  +++IVG  E   ++  +S
Sbjct: 61  RVRYLRKRLDQVKVVDYSPQQDGKIFFGAFVEIENEQ-GDTLSFRIVGPDEIFGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALI KE+ + + V  P G+K + +  + +
Sbjct: 120 IDSPMARALIKKEVDEDVIVKTPDGDKEWFVNSIRY 155


>gi|145638522|ref|ZP_01794131.1| transcription elongation factor GreB [Haemophilus influenzae
           PittII]
 gi|145272117|gb|EDK12025.1| transcription elongation factor GreB [Haemophilus influenzae
           PittII]
 gi|309750026|gb|ADO80010.1| Transcription elongation factor GreB [Haemophilus influenzae R2866]
          Length = 162

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V L  +    K+ Y+IVG  E       +
Sbjct: 61  RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEEGEIKQ-YRIVGCDEFAPPKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK L D + V+ P G  T  + ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVDTPSGFITLYVNKIWY 156


>gi|189424976|ref|YP_001952153.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ]
 gi|189421235|gb|ACD95633.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ]
          Length = 157

 Score =  129 bits (323), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 87/154 (56%), Gaps = 1/154 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +TS+G  ++Q E  +  + ERP++++ +S+A A GD SENAEY   K+     + ++ 
Sbjct: 3   NLITSQGLKRLQDEFEYLWRVERPKVVQGVSDAAAEGDRSENAEYIYGKKRLREIDRKLK 62

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +L   +   E+      +  R++FG  VS  +   G+   YQ+ G  E DV+ G++SI S
Sbjct: 63  QLGGRLKVLEIAPAPPQNPVRVSFGCWVSYEDLE-GNSYCYQLGGPDEFDVKQGVISIDS 121

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           P+ +AL+ +++ D +++  PGG+    I ++  I
Sbjct: 122 PVGQALLHRQVDDEVTIRRPGGDLVVYITEIRTI 155


>gi|197333913|ref|YP_002154890.1| transcription elongation factor GreB [Vibrio fischeri MJ11]
 gi|197315403|gb|ACH64850.1| transcription elongation factor GreB [Vibrio fischeri MJ11]
          Length = 155

 Score =  129 bits (323), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 90/156 (57%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +GF+K+Q EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTNLITREGFNKLQDELTFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + + +V+D S     +I FGA V +  +  GD  +++IVG  E   ++  +S
Sbjct: 61  RVRYLRKRLDQVKVVDYSPQQDGKIFFGAFVEIENEQ-GDTLSFRIVGPDEIFGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALI KE+ + + V  P G+K + +  + +
Sbjct: 120 IDSPMARALIKKEVDEDVIVKTPDGDKEWFVNSIKY 155


>gi|284043142|ref|YP_003393482.1| transcription elongation factor GreA [Conexibacter woesei DSM
           14684]
 gi|283947363|gb|ADB50107.1| transcription elongation factor GreA [Conexibacter woesei DSM
           14684]
          Length = 161

 Score =  129 bits (323), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   + +T  G  K++ EL     E+R  +   I EAR +GD+SENAEY  AK  Q + E
Sbjct: 1   MPKDVILTPDGLAKLKSELEHLSTEKRREVAARIKEAREFGDISENAEYDDAKNEQAMLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+LE  +  A VID  ++  D +  G++V + +  SG    Y IVG  EA+     +
Sbjct: 61  SKIAQLEEKLRAATVIDSRSVGTDVVGIGSSVQVADSQSGKSDTYVIVGSAEANPAERKL 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155
           S  SP+ +ALIG++ G+  +V  P G+ +   I ++
Sbjct: 121 SNESPVGKALIGRKAGETATVQLPNGKQRELRITKI 156


>gi|281421109|ref|ZP_06252108.1| transcription elongation factor GreA [Prevotella copri DSM 18205]
 gi|281404644|gb|EFB35324.1| transcription elongation factor GreA [Prevotella copri DSM 18205]
          Length = 155

 Score =  129 bits (323), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 88/152 (57%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+  EL+     ERP+   AI+EAR  GDLSEN+EY AAKE Q   E ++  
Sbjct: 3   YMSQEGYDKLVAELKQLVSVERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINR 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I  A++ID   +S D +   + V +    +  K  Y IV + EA+++ G +SI +P
Sbjct: 63  LKLTIAEAKIIDTKQLSTDSVQIMSKVEMTNMANKAKMTYTIVSESEANLKEGKISIKTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+ K++G++  +  P G     I ++ +
Sbjct: 123 IAQGLLNKKVGEVAEIKIPRGTINLRIDKISF 154


>gi|322830974|ref|YP_004211001.1| transcription elongation factor GreB [Rahnella sp. Y9602]
 gi|321166175|gb|ADW71874.1| transcription elongation factor GreB [Rahnella sp. Y9602]
          Length = 157

 Score =  129 bits (323), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+DK++ EL +  ++ERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTKLITREGYDKLKTELDFLWRDERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + +  ++D S     ++ FGA V +   +   K  ++IVG  E   +   +S
Sbjct: 61  RIRYLTKCMEQLRIVDYSPQQDGKVFFGAWVEVENDDGDIK-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+GD + V  P G+ T+ + ++ +
Sbjct: 120 IDSPMARALLKKEVGDSLVVTTPVGDATWYVNEIDY 155


>gi|194366636|ref|YP_002029246.1| transcription elongation factor GreB [Stenotrophomonas maltophilia
           R551-3]
 gi|194349440|gb|ACF52563.1| transcription elongation factor GreB [Stenotrophomonas maltophilia
           R551-3]
          Length = 168

 Score =  129 bits (323), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 80/151 (52%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G  +++ EL    +  RP ++KA++ A A GD SENAEY   K+     + R+  L
Sbjct: 15  ITASGHARLKAELDELWRVRRPEVVKALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+D +      + FGA V L   +SG    Y+IVG  E D   G +SI SP+
Sbjct: 75  TKRLESLRVVDTTPTDPQAVFFGAWVELENVDSGQTSRYRIVGPDETDAGLGWISIDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+ K L D  SV  P G  T+ ++ V +
Sbjct: 135 ARALLKKRLDDEFSVELPSGPHTFAVIGVEY 165


>gi|152989359|ref|YP_001347666.1| transcription elongation factor GreB [Pseudomonas aeruginosa PA7]
 gi|150964517|gb|ABR86542.1| transcription elongation factor GreB [Pseudomonas aeruginosa PA7]
          Length = 168

 Score =  129 bits (323), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 88/151 (58%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL       RP++ +A+SEA A GD SENAEY   K++    + R+  L
Sbjct: 15  ITPEGAARLRAELHELWHVRRPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +   +V+       +R+ FGA V+L +++      Y+IVG  E D+++  +SI SP+
Sbjct: 75  RKRLENLKVVGERPADANRVYFGAWVTLEDEDGEQ-ARYRIVGPDELDLRNNQISIDSPL 133

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+GKEL   + V  P GEK + ++++ +
Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEIDY 164


>gi|56415418|ref|YP_152493.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197364348|ref|YP_002143985.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56129675|gb|AAV79181.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095825|emb|CAR61398.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 157

 Score =  129 bits (323), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++ ++QEL +   EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYETLKQELNYLWHEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + GD   ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GDTLKFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE  + +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPVGEANWYVNAIEYV 156


>gi|17546871|ref|NP_520273.1| transcription elongation factor GreB [Ralstonia solanacearum
           GMI1000]
 gi|17429171|emb|CAD15859.1| probable transcription elongation factor (transcript cleavage
           factor) protein [Ralstonia solanacearum GMI1000]
          Length = 187

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL      ERP ++  +S A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYITPAGYARLRTELMHLIDVERPEVVGIVSWAASNGDRSENGDYLYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   I RAEV+D S     D+I FGATV+   ++ GD+    IVG  E D+  G VS 
Sbjct: 89  RFLTRRIERAEVVDASLQGDNDQIFFGATVTYANQD-GDETTITIVGMDEVDLDKGQVSW 147

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SPIARALI    GD +++  P G +  +IL V +
Sbjct: 148 ISPIARALIKAREGDTVALRTPTGVEPIDILAVTY 182


>gi|302878073|ref|YP_003846637.1| transcription elongation factor GreB [Gallionella capsiferriformans
           ES-2]
 gi|302580862|gb|ADL54873.1| transcription elongation factor GreB [Gallionella capsiferriformans
           ES-2]
          Length = 178

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 2/156 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  K+Q EL    + ERP ++  I+ A + GD SEN +Y   K      + R+
Sbjct: 21  KNYITPGGHQKLQTELEQLWKVERPVLVNTITWAASNGDRSENGDYIYGKRRLREIDRRV 80

Query: 64  AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   + +AEV+D +   + +++ FGATV++     G +  Y IVG  EAD+  G +S 
Sbjct: 81  RFLHKRLEQAEVVDPAKRGACEQVFFGATVTVG-HEDGSEATYAIVGVDEADLTRGHISW 139

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            SP+AR L+    GD+  +  P G    E+L+V ++
Sbjct: 140 VSPLARTLLKLHEGDVARLMTPAGIVELEVLRVCYL 175


>gi|147676597|ref|YP_001210812.1| transcription elongation factor [Pelotomaculum thermopropionicum
           SI]
 gi|146272694|dbj|BAF58443.1| transcription elongation factor [Pelotomaculum thermopropionicum
           SI]
          Length = 158

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 91/156 (58%), Gaps = 1/156 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T  G  K++ EL   +  +R  + + I +A  +GD++EN+EY+ AK  Q   
Sbjct: 1   MKEKEVILTVNGLKKLESELELLKSVKRREVAERIKQAIEFGDITENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A++ID   +  + ++ G+TV L +   GD+  Y IVG  EAD  +  
Sbjct: 61  EGRILTLEKMLRNAKIIDDENIGTEVVSIGSTVLLKDLECGDEYKYTIVGSAEADPGANK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SP+ RA++G+  G ++ V  P G+  Y+I+ +
Sbjct: 121 ISNESPVGRAILGQPKGSVVEVTVPAGQLKYQIIDI 156


>gi|170288918|ref|YP_001739156.1| transcription elongation factor GreA [Thermotoga sp. RQ2]
 gi|238688841|sp|B1LAX5|GREA_THESQ RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|170176421|gb|ACB09473.1| transcription elongation factor GreA [Thermotoga sp. RQ2]
          Length = 156

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 99/154 (64%), Gaps = 1/154 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+ +T +G++K+++EL   +++    I + I EAR  GDLSEN+EY+AAK  Q     
Sbjct: 1   MKKVRLTREGYEKLKKELEDLKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ E+E I++ AE+I+ S  + D I  G  V +   ++G++  ++IV  QEAD  +  +S
Sbjct: 61  RIMEIEQILSNAEIIEDSEEN-DEITLGKWVVIRNLDTGEEHKFRIVTPQEADFFAQKLS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+ ++L+G+++GD++ V AP G + Y+++ V
Sbjct: 120 SDSPLGKSLLGRKVGDVVKVKAPSGVQRYQVIAV 153


>gi|144898302|emb|CAM75166.1| Prokaryotic transcription elongation factor GreA/GreB
           [Magnetospirillum gryphiswaldense MSR-1]
          Length = 180

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  VT +G   + +EL    + ERPRI++ +S A   GD SEN +Y   K+     + R+
Sbjct: 24  KNYVTPQGHRALIEELDQLWRVERPRIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRV 83

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   I  +EV+         R+ FGATV+  E++   ++   +VG  EAD+  G VS 
Sbjct: 84  RFLRKRIENSEVVAPELQTDRSRVYFGATVTYAEEDGA-ERKVTLVGVDEADINHGKVSW 142

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            SP+ARAL+  E+GD + + +P G +  E++ + ++
Sbjct: 143 VSPVARALLRAEVGDTVIIRSPTGRREIEVVAIEYL 178


>gi|331701536|ref|YP_004398495.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128879|gb|AEB73432.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL
           B-30929]
          Length = 157

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +   P+T+ G DK++ EL   +  +RP++++ I  AR+YGDLSEN+EY++AK+ Q++ 
Sbjct: 1   MAEDTYPMTADGRDKLKAELEDLKVNQRPKVVERIKIARSYGDLSENSEYESAKDEQSML 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+  +E+++  A++ID +    D +  G  V+  E    D + YQIVG  EAD  SG 
Sbjct: 61  ESRITTIEHMLQYAQIIDSNDSDKDEVTVGKKVTFQELPDEDPETYQIVGAAEADPMSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ LIG  L + +++  P G    +I +V 
Sbjct: 121 ISNDSPIAKGLIGHRLNEEVNIPIPAGTMKVKITKVE 157


>gi|289550623|ref|YP_003471527.1| Transcription elongation factor GreA [Staphylococcus lugdunensis
           HKU09-01]
 gi|315658118|ref|ZP_07910990.1| transcription elongation factor GreA [Staphylococcus lugdunensis
           M23590]
 gi|289180155|gb|ADC87400.1| Transcription elongation factor GreA [Staphylococcus lugdunensis
           HKU09-01]
 gi|315496447|gb|EFU84770.1| transcription elongation factor GreA [Staphylococcus lugdunensis
           M23590]
          Length = 158

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 96/155 (61%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +G+D ++QEL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 5   KQYPMTQEGYDNLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E+++  A +I+ +  + + +  G TV+ VE    ++++YQIVG  EAD   G +S 
Sbjct: 65  IQRIEHMLRYALIIEDTGDN-NVVQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPG-GEKTYEILQVL 156
            SP+A++LIGK L D + V  P  GE   +I+ + 
Sbjct: 124 ESPMAKSLIGKGLNDEVRVQLPNGGEIRVKIVDIK 158


>gi|172058075|ref|YP_001814535.1| transcription elongation factor GreA [Exiguobacterium sibiricum
           255-15]
 gi|171990596|gb|ACB61518.1| transcription elongation factor GreA [Exiguobacterium sibiricum
           255-15]
          Length = 157

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T +G   ++ EL   +   R  +++ I  AR++GDLSENAEY +AKE Q + 
Sbjct: 1   MAEKQYYMTLEGKANVENELNELKSVRRKEVVENIKIARSFGDLSENAEYDSAKEEQAMV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+A+LE ++    +I         +  G TV+ +     +++ Y IVG  EAD  +G 
Sbjct: 61  EGRIAQLEEMLRNVAIISEDEKDISVVGIGTTVTFLILEDNEEETYTIVGSAEADPFTGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA++L G  +G+ +SV APGG+   +I  + 
Sbjct: 121 ISNESPIAKSLFGHSVGEQVSVQAPGGDFAVKITSIK 157


>gi|332975157|gb|EGK12059.1| transcription elongation factor GreA [Desmospora sp. 8437]
          Length = 158

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 92/157 (58%), Gaps = 2/157 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  K  + +T +G  K++ EL   + + R  +   + EA A GDLSENAEY AAKE Q  
Sbjct: 1   MAQKKEVLLTEEGLAKVKDELELYRTKRRQDVANRLKEAIAQGDLSENAEYDAAKEEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+  LEN++  A++ID  T + + ++ GA V++ E   GD++ Y IVG  E+D  SG
Sbjct: 61  VESRIMTLENMVRNAKIIDQDTQNKNFVSVGAKVTIQELPDGDEETYTIVGSAESDPISG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SPI   LIGK  G+ I V AP G   ++I+ +
Sbjct: 121 KISNESPIGAELIGKREGETIKVPAPSGTLEFKIISI 157


>gi|291619237|ref|YP_003521979.1| GreB [Pantoea ananatis LMG 20103]
 gi|291154267|gb|ADD78851.1| GreB [Pantoea ananatis LMG 20103]
          Length = 158

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +GF+ ++ EL    +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MRTRLITREGFNTLKAELDHLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + +  ++D S     ++ FGA V +       K  ++IVG  E   +   +S
Sbjct: 61  RVRYLSKSLEQLRIVDYSPQQDGKVFFGAWVEVENDEGDVK-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ K +GD   V  P G   + + ++ ++
Sbjct: 120 IDSPMARALLKKAVGDAAVVETPAGPACWYVNEISYV 156


>gi|254850868|ref|ZP_05240218.1| transcription elongation factor GreA [Vibrio cholerae MO10]
 gi|255744149|ref|ZP_05418102.1| transcription elongation factor GreA [Vibrio cholera CIRS 101]
 gi|262155723|ref|ZP_06028847.1| transcription elongation factor GreA [Vibrio cholerae INDRE 91/1]
 gi|262169934|ref|ZP_06037624.1| transcription elongation factor GreA [Vibrio cholerae RC27]
 gi|25453014|sp|Q9KU89|GREA_VIBCH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254846573|gb|EET24987.1| transcription elongation factor GreA [Vibrio cholerae MO10]
 gi|255738089|gb|EET93481.1| transcription elongation factor GreA [Vibrio cholera CIRS 101]
 gi|262021668|gb|EEY40379.1| transcription elongation factor GreA [Vibrio cholerae RC27]
 gi|262030434|gb|EEY49074.1| transcription elongation factor GreA [Vibrio cholerae INDRE 91/1]
 gi|327483437|gb|AEA77844.1| Transcription elongation factor GreA [Vibrio cholerae LMA3894-4]
          Length = 157

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 116/158 (73%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T++G +K+ +E   R  + RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M    ++ FGATV++++ NS ++K YQIVGD EAD++SG +
Sbjct: 60  QIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK  GD +S+  PGG K +EI +V ++
Sbjct: 120 SVNSPIARGLIGKFEGDEVSIATPGGNKVFEIDRVEYL 157


>gi|195940962|ref|ZP_03086344.1| transcription elongation factor GreB [Escherichia coli O157:H7 str.
           EC4024]
          Length = 157

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K+++E+ +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDD-GQTLRFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  V  P GE ++ + ++ ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVQTPAGEASWYVNEIEYV 156


>gi|209965876|ref|YP_002298791.1| transcription elongation factor GreB [Rhodospirillum centenum SW]
 gi|209959342|gb|ACI99978.1| transcription elongation factor GreB [Rhodospirillum centenum SW]
          Length = 180

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 81/154 (52%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T +GF ++Q+ELR   + ERP++++ ++ A   GD SEN +Y   K+     + R+
Sbjct: 22  RNYMTPEGFRRMQEELRSLLRVERPKVVEVVAWAAGNGDRSENGDYIYGKKRLREIDRRI 81

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F        +  G ++   IVG  EAD+  G VS  
Sbjct: 82  RFLSKRLENAEVVDASRQPRRDQVFFGATVTYAREDGTERTVTIVGIDEADMDQGKVSWI 141

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+    GD++++  P G +  E++ + +
Sbjct: 142 SPIARALLKAREGDLVTLRTPQGPEEIEVVAIAY 175


>gi|58582894|ref|YP_201910.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427488|gb|AAW76525.1| transcription elongation factor and transcript cleavage
           [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 188

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 83/151 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL    +  RP +++A++ A A GD SENAEY   K+     + R+  L
Sbjct: 35  ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 94

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+D +    + + FGA V L + +SG+   Y+IVG  E D   G +SI SP+
Sbjct: 95  SKRLEALRVVDTAPTDPNAVFFGAQVDLEDADSGELLRYRIVGPDETDAGRGWISIDSPL 154

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+ K + D    + P G+ T+ ++ V +
Sbjct: 155 ARALLKKRVDDEFDAHLPAGKHTFVVVSVDY 185


>gi|88607617|ref|YP_505838.1| transcription elongation factor GreA [Anaplasma phagocytophilum HZ]
 gi|88598680|gb|ABD44150.1| transcription elongation factor GreA [Anaplasma phagocytophilum HZ]
          Length = 166

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/162 (45%), Positives = 107/162 (66%), Gaps = 6/162 (3%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             + P+T  G+ K++ EL   +  ERP+IIK+IS+AR  GDLSENAEY AA+E Q L E 
Sbjct: 6   TTRFPITKGGYQKLESELEALKS-ERPKIIKSISDARELGDLSENAEYHAARERQGLVES 64

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVS----LVEKNSGDKKNYQIVGDQEADVQS 117
           ++ ELE+  +RAEVI++S +SGD + FGATV+      + ++  +  YQIVG+ EADV  
Sbjct: 65  KIMELESKKSRAEVIEVSELSGDTVMFGATVTVSVYDEQSDTTSEVKYQIVGEYEADVSK 124

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
            ++SI SP+  AL+GK  GD + +  P G+   Y+I +V +I
Sbjct: 125 NMISIKSPLVLALLGKREGDSVELKTPRGDYKVYQINKVEFI 166


>gi|222099868|ref|YP_002534436.1| Transcription elongation factor greA [Thermotoga neapolitana DSM
           4359]
 gi|254799574|sp|B9K7Y7|GREA_THENN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|221572258|gb|ACM23070.1| Transcription elongation factor greA [Thermotoga neapolitana DSM
           4359]
          Length = 156

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 100/155 (64%), Gaps = 1/155 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+ +T +G++K++QEL   +++    I + I EAR  GDLSEN+EY+AAK  Q     
Sbjct: 1   MKKVRLTREGYEKLKQELEELKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ E+E I++ AE+I+ S    +    G  V++   ++G++  ++IV  QEAD  +  +S
Sbjct: 61  RIMEIEQILSNAEIIEDSEEGDEVT-LGKWVTIRNLDTGEEHKFRIVTPQEADFFAQKLS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+ ++L+G+++GDI+ V APGG + Y++++V 
Sbjct: 120 ADSPLGKSLLGRKVGDIVKVKAPGGVQRYQVVEVT 154


>gi|261414657|ref|YP_003248340.1| transcription elongation factor GreA [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371113|gb|ACX73858.1| transcription elongation factor GreA [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 151

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/147 (35%), Positives = 80/147 (54%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           T + +DK+ ++L   +  ERPR+++ + +ARA GDLSENAEY AAKE     +       
Sbjct: 3   TQEAYDKLVKDLENLKNVERPRVLQELVDARAQGDLSENAEYHAAKERLASIDNIEMPKL 62

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
                   +     + D I FGAT++     +  +  YQ+V  +EAD  +G +S  SPI 
Sbjct: 63  QDQLARAQVIAFDANSDTIKFGATITAKNLKTKREIVYQLVSPEEADALNGKISFKSPIG 122

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQ 154
            AL+GK+ GD + V  P G+  +EI+ 
Sbjct: 123 AALMGKKRGDTVEVVTPKGKNQFEIID 149


>gi|16762784|ref|NP_458401.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29144271|ref|NP_807613.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62182005|ref|YP_218422.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161616543|ref|YP_001590508.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167549293|ref|ZP_02343052.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168232640|ref|ZP_02657698.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168235096|ref|ZP_02660154.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168260773|ref|ZP_02682746.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465229|ref|ZP_02699121.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168818685|ref|ZP_02830685.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443767|ref|YP_002042754.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194471051|ref|ZP_03077035.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194738363|ref|YP_002116445.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249725|ref|YP_002148426.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198242185|ref|YP_002217462.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200387248|ref|ZP_03213860.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204928487|ref|ZP_03219686.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|207858743|ref|YP_002245394.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213417934|ref|ZP_03351023.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213426886|ref|ZP_03359636.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213582289|ref|ZP_03364115.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213610173|ref|ZP_03369999.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213647809|ref|ZP_03377862.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213852069|ref|ZP_03381601.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224585297|ref|YP_002639096.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238910491|ref|ZP_04654328.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289807151|ref|ZP_06537780.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
 gi|289824835|ref|ZP_06544278.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25452995|sp|Q8Z217|GREB_SALTI RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|25321439|pir||AC0998 transcription elongation factor GreB greB [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16505090|emb|CAD08111.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139908|gb|AAO71473.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62129638|gb|AAX67341.1| transcription elongation factor and transcript cleavage [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161365907|gb|ABX69675.1| hypothetical protein SPAB_04359 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402430|gb|ACF62652.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194457415|gb|EDX46254.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194713865|gb|ACF93086.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195632511|gb|EDX50995.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197213428|gb|ACH50825.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197291264|gb|EDY30616.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197936701|gb|ACH74034.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199604346|gb|EDZ02891.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321920|gb|EDZ07118.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205325500|gb|EDZ13339.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205333162|gb|EDZ19926.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205344627|gb|EDZ31391.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350295|gb|EDZ36926.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710546|emb|CAR34904.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224469825|gb|ACN47655.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|320087918|emb|CBY97680.1| Transcription elongation factor greA Transcript cleavage factor
           greA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|322614123|gb|EFY11059.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618015|gb|EFY14908.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625371|gb|EFY22197.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629836|gb|EFY26609.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322632275|gb|EFY29026.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322636374|gb|EFY33081.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322643230|gb|EFY39799.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644768|gb|EFY41304.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651207|gb|EFY47591.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654925|gb|EFY51240.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322659182|gb|EFY55434.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322663117|gb|EFY59321.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668603|gb|EFY64756.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674593|gb|EFY70686.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678201|gb|EFY74262.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682542|gb|EFY78563.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684255|gb|EFY80261.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716493|gb|EFZ08064.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323192190|gb|EFZ77422.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196384|gb|EFZ81536.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201815|gb|EFZ86878.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206357|gb|EFZ91318.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211950|gb|EFZ96777.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216856|gb|EGA01579.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323222255|gb|EGA06638.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224269|gb|EGA08558.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323228198|gb|EGA12329.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233535|gb|EGA17628.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237003|gb|EGA21070.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323243782|gb|EGA27798.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323245976|gb|EGA29963.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323250752|gb|EGA34630.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255763|gb|EGA39513.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261379|gb|EGA44965.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267648|gb|EGA51130.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268529|gb|EGA51996.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326625243|gb|EGE31588.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 157

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++ ++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + GD   ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GDTLKFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE  + +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPVGEANWYVNAIEYV 156


>gi|229845698|ref|ZP_04465821.1| transcription elongation factor GreB [Haemophilus influenzae
           6P18H1]
 gi|229811384|gb|EEP47090.1| transcription elongation factor GreB [Haemophilus influenzae
           6P18H1]
          Length = 162

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V L  +    K+ Y+IVG  E       +
Sbjct: 61  RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEEGETKQ-YRIVGCDEFAPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK L D + V  P G  T  + ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156


>gi|219872157|ref|YP_002476532.1| transcription elongation factor GreB [Haemophilus parasuis SH0165]
 gi|219692361|gb|ACL33584.1| transcription elongation factor GreB [Haemophilus parasuis SH0165]
          Length = 159

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + QEL++  ++ERP++ +A+SEA A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRSGWQVLDQELKYLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V L  +    K+ Y+IVG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYHPTQEGKVFFGAWVELENEEGEIKQ-YRIVGCDEFDPAKQWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D I V  P G+ T  I ++ +
Sbjct: 120 SIDSPVARALIGKQIDDEIQVETPVGKVTLYINKIWY 156


>gi|313894662|ref|ZP_07828225.1| transcription elongation factor GreA [Veillonella sp. oral taxon
           158 str. F0412]
 gi|313440852|gb|EFR59281.1| transcription elongation factor GreA [Veillonella sp. oral taxon
           158 str. F0412]
          Length = 157

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 90/158 (56%), Gaps = 3/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D  +  +T+ G  K+++EL + +   R  + + I  A  YGD+SEN+EY  AK  Q  
Sbjct: 1   MADVKETLLTADGLKKLEEELAYYKSVRRIEVSERIKTAIEYGDISENSEYDDAKNEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EG + ELEN I  A++ID S    D ++ G+ V +++    D+  Y IVG  EAD  + 
Sbjct: 61  IEGHIVELENKINTAKIIDESVKG-DVVSVGSKVIVLDTMYNDELEYVIVGSSEADPFNN 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+ +A++GK  GD + V+ P G  T+++L + 
Sbjct: 120 RISNESPVGKAILGKRKGDEVEVSTPDGPVTFKVLAIQ 157


>gi|146313451|ref|YP_001178525.1| transcription elongation factor GreB [Enterobacter sp. 638]
 gi|145320327|gb|ABP62474.1| transcription elongation factor GreB [Enterobacter sp. 638]
          Length = 157

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K+++E+ +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYEKLKKEMDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +    ++D S     ++ FGA V +   +   K  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCLEYLRIVDYSPQQEGKVFFGAWVEIENDDGDTK-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  V  P GE ++ + ++ ++
Sbjct: 120 IDSPMARALLKKEVGDLAIVQTPSGEASWYVNEIEYV 156


>gi|16766791|ref|NP_462406.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167990706|ref|ZP_02571805.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168241643|ref|ZP_02666575.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194447454|ref|YP_002047527.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197264550|ref|ZP_03164624.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|25452998|sp|Q8ZLJ2|GREB_SALTY RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|16422062|gb|AAL22365.1| transcription elongation factor and transcript cleavage [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|194405758|gb|ACF65977.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197242805|gb|EDY25425.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205330768|gb|EDZ17532.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205338738|gb|EDZ25502.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|261248658|emb|CBG26496.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995723|gb|ACY90608.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160046|emb|CBW19565.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914527|dbj|BAJ38501.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321226553|gb|EFX51603.1| Transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323131862|gb|ADX19292.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990355|gb|AEF09338.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 157

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++ ++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + GD+  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GDRLKFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE  + +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPVGEANWYVNAIEYV 156


>gi|124515276|gb|EAY56786.1| putative transcription elongation factor GreA [Leptospirillum
           rubarum]
 gi|206601580|gb|EDZ38063.1| Putative transcription elongation factor GreA [Leptospirillum sp.
           Group II '5-way CG']
          Length = 160

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 105/156 (67%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++++P+T  G++K+++EL   + EERP+ I+ I+EARA+GDLSENAEY AAKE Q     
Sbjct: 1   MNQVPMTKAGYEKLKEELEKLKHEERPKNIQDIAEARAHGDLSENAEYHAAKERQGFINS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE  I  A V+  +     RI FGATV LV  +S ++K Y +VG +EAD+++G +S
Sbjct: 61  RIKELEAKIASAIVVSSAHQDHSRITFGATVRLVPLDSKEEKRYTLVGQEEADLKAGRIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SP+ +ALIG   G+ +++  P GE  Y I ++ +
Sbjct: 121 VHSPVGKALIGHSEGETVTIRVPAGEVQYTIAEIFY 156


>gi|82702992|ref|YP_412558.1| transcription elongation factor GreB [Nitrosospira multiformis ATCC
           25196]
 gi|82411057|gb|ABB75166.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC
           25196]
          Length = 213

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 85/156 (54%), Gaps = 3/156 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G  ++  E  W    ERP++   +S A A GD SENA+Y   K+     + R+
Sbjct: 31  KNYITPEGHKRLMDEFLWLMNRERPQVTATVSWAAANGDRSENADYIYGKKRLREIDRRI 90

Query: 64  AELENIITRAEVIDISTMSGD--RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
             L   +  AE+ID S    D  RI FGATV+ + +    +K   IVG  E D   G +S
Sbjct: 91  RFLTRRLDMAEIIDPSMPREDESRIFFGATVTYINEKGE-EKIVSIVGVNEIDTTRGYIS 149

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SP+AR L+    GD+++++APGG +  EIL+V +
Sbjct: 150 WVSPLARTLLKAREGDVVTLHAPGGTEELEILEVRY 185


>gi|148270136|ref|YP_001244596.1| transcription elongation factor GreA [Thermotoga petrophila RKU-1]
 gi|281412522|ref|YP_003346601.1| GreA/GreB family elongation factor [Thermotoga naphthophila RKU-10]
 gi|166201192|sp|A5ILE7|GREA_THEP1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|147735680|gb|ABQ47020.1| transcription elongation factor GreA [Thermotoga petrophila RKU-1]
 gi|281373625|gb|ADA67187.1| GreA/GreB family elongation factor [Thermotoga naphthophila RKU-10]
          Length = 156

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 98/154 (63%), Gaps = 1/154 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+ +T +G++K+++EL   +++    I + I EAR  GDLSEN+EY+AAK  Q     
Sbjct: 1   MKKVRLTREGYEKLKKELEDLKRKFMYEISERIKEARELGDLSENSEYEAAKNEQGRVGS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ E+E I++ AE+I+ S  S +    G  V +   ++G++  ++IV  QEAD  +  +S
Sbjct: 61  RIMEIEQILSNAEIIEDSEESDEVT-LGKWVVIKNLDTGEEHKFRIVTPQEADFFAQKLS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+ ++L+G+++GD++ V AP G + Y+++ V
Sbjct: 120 SDSPLGKSLLGRKVGDVVKVKAPSGVQRYQVMAV 153


>gi|254468751|ref|ZP_05082157.1| transcription elongation factor GreB [beta proteobacterium KB13]
 gi|207087561|gb|EDZ64844.1| transcription elongation factor GreB [beta proteobacterium KB13]
          Length = 160

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 91/159 (57%), Gaps = 2/159 (1%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M ++   +T  GF  +++EL    + +RPR++K +S A + GD SEN +Y   K+     
Sbjct: 1   MSEQSSYLTKNGFIYLREELNHLLKVDRPRVVKDVSWAASNGDRSENGDYIYGKKRLRQI 60

Query: 60  EGRMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           + R+  L  +I  +++ID     + D++ FGATV     +       QIVG  E D +  
Sbjct: 61  DSRVKYLLTVIEDSKIIDPLEQENKDKVFFGATVEYENLDKNQINKIQIVGVPEVDPKEN 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +S  SP+++A++GK++G+I+S  +P G+K  EI+ +++
Sbjct: 121 KISWLSPLSKAILGKQVGEIVSYESPSGQKEIEIMSIIY 159


>gi|260655320|ref|ZP_05860808.1| transcription elongation factor GreA [Jonquetella anthropi E3_33
           E1]
 gi|260629768|gb|EEX47962.1| transcription elongation factor GreA [Jonquetella anthropi E3_33
           E1]
          Length = 152

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 62/152 (40%), Positives = 97/152 (63%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+D +  EL   + EER RI K I EAR++GDLSENAEY AAK+ Q+  EG++  L
Sbjct: 1   MTRQGYDALMAELIHLRSEERYRIAKRIEEARSFGDLSENAEYAAAKDEQSKLEGKIQSL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E  + RAEV+D S++ G  IA G  V+L+++    +  Y IV  +EA+ + G +S +SP+
Sbjct: 61  EYQLNRAEVVDSSSLDGSLIAVGTQVTLMDQTYRKQFVYSIVNSKEANPKEGRISSASPV 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            RA++ +  GD + V  P G +  ++L++  I
Sbjct: 121 GRAILNRHKGDEVIVKTPKGIRKLKVLKIDVI 152


>gi|330503584|ref|YP_004380453.1| transcription elongation factor GreB [Pseudomonas mendocina NK-01]
 gi|328917870|gb|AEB58701.1| transcription elongation factor GreB [Pseudomonas mendocina NK-01]
          Length = 165

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 92/151 (60%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL       RP++ +++SEA A GD SENAEY   K++    + R+  L
Sbjct: 15  ITPEGEARLRAELHELWHVRRPQVTQSVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              + + +V+       +++ FGA V++ +++      Y+IVG  E D++ GL+SI SP+
Sbjct: 75  TKRLEKLKVVSEKPSDPNKVYFGAWVTIEDEDGEQ-SRYRIVGPDELDLKQGLISIDSPL 133

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+GKEL   + V++P GEKT  I+++ +
Sbjct: 134 ARALVGKELDAEVRVHSPSGEKTCYIVEIGY 164


>gi|307249608|ref|ZP_07531594.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858306|gb|EFM90376.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 162

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + QEL++  ++ERP++  A+SEA A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRSGWQTLDQELKFLWKDERPKVTHAVSEAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V L  +    K+ Y+IVG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEQGETKQ-YRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGKE+ D I V+ P G+    I ++ +
Sbjct: 120 SIDSPVARALIGKEVDDEIKVDTPLGKSLLYINKIWY 156


>gi|238019652|ref|ZP_04600078.1| hypothetical protein VEIDISOL_01526 [Veillonella dispar ATCC 17748]
 gi|237863693|gb|EEP64983.1| hypothetical protein VEIDISOL_01526 [Veillonella dispar ATCC 17748]
          Length = 157

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 92/158 (58%), Gaps = 3/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D  +  +T++G  K+++EL + +   R  + + I  A  YGD+SEN+EY  AK  Q  
Sbjct: 1   MADVKETLLTAEGLKKLEEELMYYKSVRRIEVSERIKTAIEYGDISENSEYDDAKNEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EG + ELEN I  A++ID S    D ++ G+ V++++    D+  Y IVG  EAD  + 
Sbjct: 61  IEGHIVELENKINTAKIIDESVKG-DVVSVGSKVTVLDTMYNDELEYVIVGSSEADPFNN 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+ +A++GK  GD + V+ P G  T+++L + 
Sbjct: 120 RISNESPVGKAILGKRKGDEVEVSTPDGPVTFKVLAIQ 157


>gi|37524231|ref|NP_927575.1| transcription elongation factor GreB [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36783654|emb|CAE12506.1| Transcription elongation factor (transcript cleavage factor)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 157

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K+++EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTKLITREGYNKLKEELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +     +D S     R+ FGA V +       K  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKSLEELRCVDYSPQQDGRVFFGAWVEIENDQGEIK-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+GD   V+ P G+  + + ++ +
Sbjct: 120 IDSPMARALLKKEVGDSAIVHTPTGKVLWYVNEIEY 155


>gi|323703648|ref|ZP_08115290.1| GreA/GreB family elongation factor [Desulfotomaculum nigrificans
           DSM 574]
 gi|323531363|gb|EGB21260.1| GreA/GreB family elongation factor [Desulfotomaculum nigrificans
           DSM 574]
          Length = 158

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 91/156 (58%), Gaps = 1/156 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T  G  ++++EL   +  +R ++ + I +A  +GD+SEN+EY+ AK  Q   
Sbjct: 1   MKEKDVMLTVTGLKQLEEELEQLKTVKRRQVAERIKQAIEFGDISENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A++ID   +  + ++ G+ V L +   GD+  Y IVG  EAD     
Sbjct: 61  EGRILTLEKMLRNAKIIDDENLGNEVVSLGSKVRLKDLEFGDEFEYTIVGSVEADPDKNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SP+ +A++G+  G I+ V+ P G   YEIL +
Sbjct: 121 ISNESPVGKAILGQPKGSIVEVSVPAGVLKYEILDI 156


>gi|16272512|ref|NP_438726.1| transcription elongation factor GreB [Haemophilus influenzae Rd
           KW20]
 gi|260581015|ref|ZP_05848838.1| transcription elongation factor GreB [Haemophilus influenzae RdAW]
 gi|1170017|sp|P43882|GREB_HAEIN RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|1573556|gb|AAC22227.1| transcription elongation factor (greB) [Haemophilus influenzae Rd
           KW20]
 gi|260092374|gb|EEW76314.1| transcription elongation factor GreB [Haemophilus influenzae RdAW]
          Length = 158

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V L  +    K+ Y+IVG  E       +
Sbjct: 61  RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEEGETKQ-YRIVGCDEFAPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK L D + V  P G  T  + ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156


>gi|227329053|ref|ZP_03833077.1| transcription elongation factor GreB [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 158

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+DK++ E       +RP I K +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTNLITREGYDKLRAEHDHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-QSGLV 120
           R+  L   +T  +++D S      + FGA V +  +    K   +IVG  E        +
Sbjct: 61  RVRYLRKCLTELKIVDYSPQQDGSVFFGAWVEIENEQGDVK-RLRIVGPDEIYGDNKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI SP+ARA++ K + +  +VN P G + + +  + ++
Sbjct: 120 SIDSPMARAMLKKAVDEEFTVNTPDGPREWFVNSIDYV 157


>gi|157148990|ref|YP_001456309.1| transcription elongation factor GreB [Citrobacter koseri ATCC
           BAA-895]
 gi|157086195|gb|ABV15873.1| hypothetical protein CKO_04828 [Citrobacter koseri ATCC BAA-895]
          Length = 157

 Score =  128 bits (321), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++ EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYEKLKHELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +       +  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDEGDIR-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  V+ P GE ++ + ++ ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVHTPAGEASWYVNEIEYV 156


>gi|258513604|ref|YP_003189826.1| transcription elongation factor GreA [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257777309|gb|ACV61203.1| transcription elongation factor GreA [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 158

 Score =  128 bits (321), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 87/156 (55%), Gaps = 1/156 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T  G   +++EL   +   R  I   I +A  +GD+SEN+EY+ AK  Q   
Sbjct: 1   MKEKEVILTVAGLKNLEEELEQLKSVRRREIAARIKQAIEFGDISENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A++ID   +  + +  G+ V L +   GD+  Y IVG  EAD  +  
Sbjct: 61  EGRILTLEKMLRNAKIIDDENIDIEAVHIGSKVLLKDLEFGDEFEYTIVGSVEADPGASK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SP+ +A++GK  G ++ VN P G   YEI+ +
Sbjct: 121 ISNESPVGKAILGKPKGSVVEVNVPAGILKYEIMDI 156


>gi|225026969|ref|ZP_03716161.1| hypothetical protein EUBHAL_01225 [Eubacterium hallii DSM 3353]
 gi|224955705|gb|EEG36914.1| hypothetical protein EUBHAL_01225 [Eubacterium hallii DSM 3353]
          Length = 160

 Score =  128 bits (321), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/154 (40%), Positives = 93/154 (60%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +TS+G   ++ EL+  +  +R  I + I EAR  GDLSENAEY AAK+ Q   E 
Sbjct: 4   AKKHILTSQGMQALEDELQDLKVVKRKEIAQKIKEAREQGDLSENAEYDAAKDEQRSMEA 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE II  AEVID S    D ++ G+TV   ++   ++  Y+IVG  E+D+  GL+S
Sbjct: 64  RIEELEKIIKNAEVIDESAYDKDTVSIGSTVKFYDEEFDEELEYRIVGSTESDILKGLIS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+ + LIG ++G+ + V +P G   Y+IL +
Sbjct: 124 NESPLGKGLIGAKIGETVQVESPDGFSRYKILGI 157


>gi|295696559|ref|YP_003589797.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912]
 gi|295412161|gb|ADG06653.1| GreA/GreB family elongation factor [Bacillus tusciae DSM 2912]
          Length = 158

 Score =  128 bits (321), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 89/151 (58%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G  K+++EL W + E+R  + + +  AR+YGDLSEN+EY AAKE Q   E R+ +
Sbjct: 8   YMTEEGLRKLKEELEWLKTEKRAEVKERLKIARSYGDLSENSEYDAAKEEQAFVESRILQ 67

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE+ I RA++I         ++ G+TV++ E   G ++ Y IVG  EAD     +S  SP
Sbjct: 68  LEDQIRRAKIIREEDRVEGVVSIGSTVTIRELPDGPEETYTIVGTAEADPGKFRISNESP 127

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           I   L+G+  G+ + +  P GE  + ILQ+ 
Sbjct: 128 IGAGLLGRRAGEEVGIQTPAGEILFRILQIR 158


>gi|116623798|ref|YP_825954.1| transcription elongation factor GreB [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116226960|gb|ABJ85669.1| transcription elongation factor GreB [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 227

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 5/158 (3%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  ++++E R+    ERP + K ++ A + GD SENA+YQ  K      +GR+
Sbjct: 44  KNYITPDGLQRLKEEHRFLLTRERPAVTKVVAWAASNGDRSENADYQYGKRRLRQIDGRI 103

Query: 64  AELENIITRAEVIDISTMS----GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
             L   I  AEV+D           R  FGATV       G ++   IVG  E D+    
Sbjct: 104 RFLTKRIDAAEVVDPERPRAGQAATRAFFGATVHYANAA-GTERVVSIVGTDEVDLNRNH 162

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +S  SP+ RAL+    GD + + APGG +   +L+V +
Sbjct: 163 ISWVSPLGRALMKSAAGDRVVLQAPGGTEHLVVLKVCY 200


>gi|300919309|ref|ZP_07135822.1| transcription elongation factor GreB [Escherichia coli MS 115-1]
 gi|300413604|gb|EFJ96914.1| transcription elongation factor GreB [Escherichia coli MS 115-1]
          Length = 153

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 88/154 (57%), Gaps = 1/154 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCLENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           I SP+ARAL+ KE+GD+  VN P GE ++ +  +
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPAGEASWYVNAI 153


>gi|85710775|ref|ZP_01041836.1| GreB [Idiomarina baltica OS145]
 gi|85695179|gb|EAQ33116.1| GreB [Idiomarina baltica OS145]
          Length = 169

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +GFD +Q+EL    + ER   ++ +S A + GD SENA+Y+  K+     + 
Sbjct: 1   MKTNLITRRGFDMLQRELNQLWRVERRETVEKVSWAASLGDRSENADYKYNKQKLRRIDS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + + +V+D S     ++ FGA V + ++    +  +QIVG  E      +VS
Sbjct: 61  RIRYLTKRLDQLKVVDYSPQQDGQVFFGAFVEIEDEQGTIR-RFQIVGPDEIYDSKDVVS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I +P+ARAL+ K + D ++V  P GE+ + I ++ +
Sbjct: 120 IDAPMARALLKKHVDDEVTVVTPKGEQCWFINKIQY 155


>gi|329297354|ref|ZP_08254690.1| transcription elongation factor GreB [Plautia stali symbiont]
          Length = 211

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 86/159 (54%), Gaps = 3/159 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++ E      E+RP I + +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTQLITREGYNKLRAEHDHLWNEKRPEITRIVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGL 119
           R+  L   +   +++D +     ++ FGA V +  +    K  ++IVG  E   D     
Sbjct: 61  RVRYLRKCLAELKIVDYAPQQEGKVFFGAWVEVENEQGDVK-RFRIVGPDEIYGDTVKDY 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SI SP+ARALI KE+ + ++VN P G+K + + ++ ++
Sbjct: 120 ISIDSPMARALIKKEVDEEVTVNTPEGQKVWFVNRIEYV 158


>gi|145633475|ref|ZP_01789204.1| transcription elongation factor GreB [Haemophilus influenzae 3655]
 gi|144985844|gb|EDJ92452.1| transcription elongation factor GreB [Haemophilus influenzae 3655]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V L  +    K+ Y+IVG  E       +
Sbjct: 61  RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEEGETKQ-YRIVGCDEFAPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK L D + V  P G  T  + ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156


>gi|148553320|ref|YP_001260902.1| transcription elongation factor GreB [Sphingomonas wittichii RW1]
 gi|148498510|gb|ABQ66764.1| transcription elongation factor GreB [Sphingomonas wittichii RW1]
          Length = 163

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 5/161 (3%)

Query: 1   MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M  +     +T  GF  ++         ERP +++ IS A   GD SEN +Y   ++   
Sbjct: 1   MSSQPPPNYITPAGFAAMRARYDHLFGTERPALVEVISWAAGNGDRSENGDYIYGRKKLR 60

Query: 58  LNEGRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
             +  +A L   +  A+V+D +      ++ FGATV++V+++   ++   +VG  EAD  
Sbjct: 61  EIDRELAYLSRRMKAAKVVDPARQAERGKVFFGATVTVVDED-DVERTVTLVGADEADAG 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SG +S  SP+ARAL G  +GD+  V  PGG++  EIL + +
Sbjct: 120 SGRISWLSPLARALRGAAVGDVRRVALPGGDREQEILSIRY 160


>gi|320162389|ref|YP_004175614.1| transcription elongation factor GreA [Anaerolinea thermophila
           UNI-1]
 gi|319996243|dbj|BAJ65014.1| transcription elongation factor GreA [Anaerolinea thermophila
           UNI-1]
          Length = 155

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 93/156 (59%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+ K+Q+EL + + ++R  I + + EA   G+L ENAEY+AAK  Q   E
Sbjct: 1   MPTTPFLTREGYAKLQEELEYLRTKKREEIAQRLHEAMEGGELIENAEYEAAKNEQAFVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE ++  A++I+     G+ +  G+ V++ E+ +  +  Y IVG  EA+   G +
Sbjct: 61  GRIKELEYLLASAKIIEEGGTHGNVVQVGSRVTIQEEGAEPEV-YTIVGAAEANPVLGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SP+ +ALIGK+ GD + V+AP G     IL+V 
Sbjct: 120 SNESPLGKALIGKKAGDNVQVDAPQGSFRVTILKVE 155


>gi|304397825|ref|ZP_07379701.1| GreA/GreB family elongation factor [Pantoea sp. aB]
 gi|304354536|gb|EFM18907.1| GreA/GreB family elongation factor [Pantoea sp. aB]
          Length = 157

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +GFDK++ EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTRLITREGFDKLKAELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + +  ++D S     ++ FGA V +       K  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKSLEQLRIVDYSPQQDGKVFFGAWVEIENDEGDLK-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+GD  +V  P G   + +  + +
Sbjct: 120 IDSPMARALLKKEVGDAATVETPVGPALWYVNAIDY 155


>gi|197301310|ref|ZP_03166395.1| hypothetical protein RUMLAC_00041 [Ruminococcus lactaris ATCC
           29176]
 gi|197299628|gb|EDY34143.1| hypothetical protein RUMLAC_00041 [Ruminococcus lactaris ATCC
           29176]
          Length = 160

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 2/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T  G   ++ EL   +  +R  +   I EAR  GDLSENAEY AAK+ Q  
Sbjct: 1   MAEAKKRLLTYAGLKALEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRD 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ELE I+  AEV+    +  D+I  G TV + +    ++  ++IVG  EA+   G
Sbjct: 61  IEARIEELEAILKNAEVVVEDEVDLDKINVGCTVKVFDITFDEEMEFKIVGSTEANSLEG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+ +AL+GK++ D++ V    G   Y++L + 
Sbjct: 121 KISNESPVGQALMGKKVNDVVDVETQAGVIQYKVLDIQ 158


>gi|170718655|ref|YP_001783851.1| transcription elongation factor GreB [Haemophilus somnus 2336]
 gi|168826784|gb|ACA32155.1| transcription elongation factor GreB [Haemophilus somnus 2336]
          Length = 158

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G++ + QEL++  ++ERP+I +A+S+A A GD SENAEY   K      +
Sbjct: 1   MPKSNYITRSGWNILDQELKYLWKDERPKITQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V+L ++    +K Y+IVG  E D     +
Sbjct: 61  RRVRFLMKRLEVLQIVDYNPKQEGKVFFGAWVALEDEQGE-EKQYRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGKE+ D I V  P G  +  I ++ +
Sbjct: 120 SIDSPVARALIGKEVDDEIKVATPSGIVSLYINRIWY 156


>gi|148827761|ref|YP_001292514.1| transcription elongation factor GreB [Haemophilus influenzae
           PittGG]
 gi|148719003|gb|ABR00131.1| transcription elongation factor GreB [Haemophilus influenzae
           PittGG]
          Length = 158

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V L  +    K+ Y+IVG  E       +
Sbjct: 61  RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEEGEIKQ-YRIVGCDEFAPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK L D + V  P G  T  + ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYVNKIWY 156


>gi|190149679|ref|YP_001968204.1| transcription elongation factor GreB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307245216|ref|ZP_07527307.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307262987|ref|ZP_07544609.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914810|gb|ACE61062.1| transcription elongation factor GreB [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306853860|gb|EFM86074.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306871613|gb|EFN03335.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 162

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + QEL++  ++ERP++ +A+SEA A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V L  +    K+ Y+IVG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEQGETKQ-YRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGKE  D I V+ P G+    I ++ +
Sbjct: 120 SIDSPVARALIGKEADDEIKVDTPLGKSLLYINKIWY 156


>gi|332528000|ref|ZP_08404034.1| transcription elongation factor GreB [Rubrivivax benzoatilyticus
           JA2]
 gi|332112574|gb|EGJ12367.1| transcription elongation factor GreB [Rubrivivax benzoatilyticus
           JA2]
          Length = 193

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T +G+  +++EL      ERP+I++ +S A   GD SEN +Y   K+     + R+
Sbjct: 30  RNYMTPQGWRMLREELMTLLDVERPKIVETVSWAAKNGDRSENGDYLYGKKRLREIDRRI 89

Query: 64  AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV D S     D++ FGATV+        ++   I G  EAD   G VS 
Sbjct: 90  RFLTKRLDIAEVADPSAHHGSDQVFFGATVTYANAKGE-ERTITIKGIDEADNLKGEVSW 148

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +PIARAL+    GD + +  PGG +T E+++V +
Sbjct: 149 VAPIARALLKSREGDEVQLMTPGGLETIEVVEVRY 183


>gi|281421867|ref|ZP_06252866.1| transcription elongation factor GreA [Prevotella copri DSM 18205]
 gi|281404109|gb|EFB34789.1| transcription elongation factor GreA [Prevotella copri DSM 18205]
          Length = 154

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 83/152 (54%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             ++ +G+D++  EL+     E P +  AI+EAR  GDLSEN EY AAK  Q     R++
Sbjct: 2   EYMSQEGYDELVAELQHMVNVELPAVRDAIAEARDKGDLSENFEYHAAKREQGKLLSRIS 61

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
             + ++  A VID S +  D +   + + +    +    NY IV   EAD+ SG +SI S
Sbjct: 62  FKQKVLENARVIDKSRLKSDTVGLLSKIKITNLANKCSMNYTIVNPHEADLHSGKISIKS 121

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           PIA+AL+GK+ G+ + V  P G   + +  V 
Sbjct: 122 PIAKALLGKKAGEEVMVKVPAGLLKFRLDSVE 153


>gi|121634487|ref|YP_974732.1| transcription elongation factor GreB [Neisseria meningitidis FAM18]
 gi|304388016|ref|ZP_07370187.1| transcription elongation factor GreB [Neisseria meningitidis ATCC
           13091]
 gi|313668831|ref|YP_004049115.1| transcription elongation factor [Neisseria lactamica ST-640]
 gi|120866193|emb|CAM09933.1| putative transcription elongation factor [Neisseria meningitidis
           FAM18]
 gi|254670524|emb|CBA06313.1| Transcription elongation factor [Neisseria meningitidis alpha153]
 gi|254673612|emb|CBA09140.1| Transcription elongation factor [Neisseria meningitidis alpha275]
 gi|304337964|gb|EFM04103.1| transcription elongation factor GreB [Neisseria meningitidis ATCC
           13091]
 gi|308388876|gb|ADO31196.1| putative transcription elongation factor [Neisseria meningitidis
           alpha710]
 gi|313006293|emb|CBN87756.1| putative transcription elongation factor [Neisseria lactamica
           020-06]
 gi|325127803|gb|EGC50711.1| transcription elongation factor GreB [Neisseria meningitidis N1568]
 gi|325129850|gb|EGC52657.1| transcription elongation factor GreB [Neisseria meningitidis
           OX99.30304]
 gi|325131857|gb|EGC54557.1| transcription elongation factor GreB [Neisseria meningitidis M6190]
 gi|325133796|gb|EGC56452.1| transcription elongation factor GreB [Neisseria meningitidis
           M13399]
 gi|325136088|gb|EGC58698.1| transcription elongation factor GreB [Neisseria meningitidis M0579]
 gi|325137907|gb|EGC60482.1| transcription elongation factor GreB [Neisseria meningitidis
           ES14902]
 gi|325141938|gb|EGC64378.1| transcription elongation factor GreB [Neisseria meningitidis
           961-5945]
 gi|325143923|gb|EGC66233.1| transcription elongation factor GreB [Neisseria meningitidis
           M01-240013]
 gi|325203776|gb|ADY99229.1| transcription elongation factor GreB [Neisseria meningitidis
           M01-240355]
 gi|325206467|gb|ADZ01920.1| transcription elongation factor GreB [Neisseria meningitidis
           M04-240196]
 gi|325207735|gb|ADZ03187.1| transcription elongation factor GreB [Neisseria meningitidis
           NZ-05/33]
          Length = 163

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 71/155 (45%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A   GD SEN +Y   K      + R+
Sbjct: 6   KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F      + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLESAVVVDPELREATDQVFFGATVGLLRGDGREQTVKIVGIDEIDTAQNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR LI    GD + +N P G +  EIL V +I
Sbjct: 126 SPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160


>gi|51891618|ref|YP_074309.1| transcription elongation factor [Symbiobacterium thermophilum IAM
           14863]
 gi|51855307|dbj|BAD39465.1| transcription elongation factor [Symbiobacterium thermophilum IAM
           14863]
          Length = 160

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 91/154 (59%), Gaps = 2/154 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           + ++ +G  ++Q+EL + +  +R  + + + EAR+YGDLSEN+EY  A+  Q   EGR+A
Sbjct: 7   VVLSPEGLQQLQEELDYLRNVKRKEVAERLKEARSYGDLSENSEYDDARNEQAFVEGRIA 66

Query: 65  ELENIITRAEVIDISTMSGD--RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
            LEN +  A ++D S    +  +I  G+TV L +   GD   Y IVG  EAD     +S 
Sbjct: 67  MLENTLRNAVIMDESEDEAEAGKIRLGSTVVLKDLEYGDLLEYTIVGTVEADPAKNKISN 126

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +A++G+  G+++ V AP G   YEI+ V 
Sbjct: 127 ESPVGKAIMGRTKGEVVVVEAPAGRIEYEIVDVK 160


>gi|332533239|ref|ZP_08409106.1| transcription elongation factor GreB [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037318|gb|EGI73773.1| transcription elongation factor GreB [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 159

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G+ ++QQE       +RP + K +S A + GD SENA+YQ  K L    + 
Sbjct: 1   MKTNLVTREGYLQLQQEHDQLWNVKRPEVTKIVSWAASLGDRSENADYQYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   I   ++ID S +   ++ FGA V +  +    K  ++IVG  E   +   +S
Sbjct: 61  RVRYLRKRIPDLKIIDYSPVQDGKVFFGAWVEIENEEGEVK-KFRIVGPDEIYDRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALI K++ D   V  P G+K + +  + +
Sbjct: 120 IDSPMARALIKKQVDDEFEVTTPQGKKQWYVNSIDY 155


>gi|150392207|ref|YP_001322256.1| transcription elongation factor GreA [Alkaliphilus metalliredigens
           QYMF]
 gi|149952069|gb|ABR50597.1| transcription elongation factor GreA [Alkaliphilus metalliredigens
           QYMF]
          Length = 158

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T++G  KI+ +L   +   R  +   I +A A+GDLSEN+EY  AK  Q   
Sbjct: 1   MTEKEVLLTAQGLKKIEDDLEQLKTVRRREVAGRIKQAIAFGDLSENSEYDEAKNEQAQV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A+LEN++ +A VID S +S D ++ G TV + +    +   Y IVG  EAD     
Sbjct: 61  EERIAKLENMLRKARVIDESEISSDVVSIGTTVEVKDLEYDEIVEYTIVGSAEADPYELR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ R L+G+++G+++ +  P G   Y++L++ 
Sbjct: 121 ISNESPVGRTLLGRKVGEVVDIQIPDGVTQYKVLKIT 157


>gi|83313517|ref|YP_423781.1| transcription elongation factor GreB [Magnetospirillum magneticum
           AMB-1]
 gi|82948358|dbj|BAE53222.1| Transcription elongation factor [Magnetospirillum magneticum AMB-1]
          Length = 182

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 80/155 (51%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +  +GF  ++ EL    + ERP++++ +S A   GD SEN +Y   K+     + R+
Sbjct: 27  KNYMRPQGFAALKAELSHLHKIERPKVVEVVSWAAGNGDRSENGDYLYGKKRLREIDRRI 86

Query: 64  AELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  A V+D       D+I FGATV+        +    IVG  EAD++ GL+S 
Sbjct: 87  RFLTKRMESAHVVDPEQQKKRDQIFFGATVTYANARDE-EITVTIVGIDEADLEKGLISW 145

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+    GD + V  P G +  E++ + +
Sbjct: 146 ISPVARALLKAAEGDSVPVRTPSGVEMIEVVAISY 180


>gi|326203392|ref|ZP_08193257.1| transcription elongation factor GreA [Clostridium papyrosolvens DSM
           2782]
 gi|325986650|gb|EGD47481.1| transcription elongation factor GreA [Clostridium papyrosolvens DSM
           2782]
          Length = 158

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 88/154 (57%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             ++ +T +G  K+++EL + +  +R  + + I +A ++GD+SEN+EY  AK  Q   EG
Sbjct: 3   AKEVVLTYEGLKKLEEELEFLRGTKRKEVAERIKQALSFGDISENSEYDEAKNEQAQVEG 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +LE+++  A +ID   ++ D ++ G+ V + +    ++  Y IVG  EA+     +S
Sbjct: 63  RIVQLESMLKHARIIDEDEVNTDVVSLGSKVKIYDIEFDEEVEYLIVGSTEANPLKSKIS 122

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+  ALIG    + + V  P G   ++IL++
Sbjct: 123 NESPVGAALIGHSKDETVEVQVPDGVLKFKILEI 156


>gi|149917972|ref|ZP_01906466.1| transcription elongation factor GreB [Plesiocystis pacifica SIR-1]
 gi|149821238|gb|EDM80642.1| transcription elongation factor GreB [Plesiocystis pacifica SIR-1]
          Length = 164

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 2/151 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G+ K++ EL    + ERPR+   ++ A A GD SENAEYQ  K      + R+  L
Sbjct: 8   ITPFGYAKLKAELEELWKVERPRVTDEVAAAAALGDRSENAEYQYGKRRLREIDRRVRWL 67

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+  +     ++ FGA V++ ++    K  +Q+VG  E DV+ G +S++SP 
Sbjct: 68  NKRLKELTVVRGAPAD-GKVHFGAWVTVEDEAGEQK-RWQLVGSDEFDVKDGKISVNSPF 125

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            RAL+G+E+GD + V  P G+    IL + +
Sbjct: 126 GRALLGREVGDDVEVQRPKGDLELVILAIDY 156


>gi|84624754|ref|YP_452126.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188577733|ref|YP_001914662.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84368694|dbj|BAE69852.1| Transcription elongation factor greB [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188522185|gb|ACD60130.1| transcription elongation factor GreB [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 83/151 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL    +  RP +++A++ A A GD SENAEY   K+     + R+  L
Sbjct: 15  ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+D +    + + FGA V L + +SG+   Y+IVG  E D   G +SI SP+
Sbjct: 75  SKRLEALRVVDTAPTDPNAVFFGAQVDLEDADSGELLRYRIVGPDETDAGRGWISIDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+ K + D    + P G+ T+ ++ V +
Sbjct: 135 ARALLKKRVDDEFDAHLPAGKHTFVVVSVDY 165


>gi|313115332|ref|ZP_07800807.1| transcription elongation factor GreA [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622363|gb|EFQ05843.1| transcription elongation factor GreA [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 161

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 90/158 (56%), Gaps = 1/158 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +I +++ G   +Q+EL + +   R  + + I EAR++GDLSEN+EY  AK  Q L E
Sbjct: 1   MAQEIKMSAAGLKAMQEELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ ELE +I  A +ID S +S D ++ G  V+++     + + Y IVG  EAD  +G +
Sbjct: 61  NRITELEQMIKNAVIIDESELSVDNVSVGTHVTILMTGEDENEEYDIVGRTEADPLNGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           S  SP+  AL+GK +GD   V  P G    Y +L +  
Sbjct: 121 SDESPVGHALLGKAVGDKAEVLLPTGHTVEYTVLNITH 158


>gi|83643478|ref|YP_431913.1| transcription elongation factor GreB [Hahella chejuensis KCTC 2396]
 gi|83631521|gb|ABC27488.1| transcription elongation factor GreB [Hahella chejuensis KCTC 2396]
          Length = 167

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 90/152 (59%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +TS+G   +++EL++  + +RP + KA+SEA A GD SENAEY   K+     + R+  
Sbjct: 14  YITSEGERVLREELQYLWKVKRPEVTKAVSEAAAMGDRSENAEYIYGKKQLREIDRRVRY 73

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +   +V+D       R+ FGA V+L ++  GD+  Y+IVG  E   Q G +S+ SP
Sbjct: 74  LTKRLDELKVVDRPPEDQSRVYFGAWVTLEDEE-GDEHRYRIVGSDEIGAQKGYISVDSP 132

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +A+AL+ K++ D   V  P G K+Y ++++ +
Sbjct: 133 MAKALLKKQVDDEAIVTTPSGRKSYFVIEIEY 164


>gi|333029629|ref|ZP_08457690.1| transcription elongation factor GreA [Bacteroides coprosuis DSM
           18011]
 gi|332740226|gb|EGJ70708.1| transcription elongation factor GreA [Bacteroides coprosuis DSM
           18011]
          Length = 154

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/150 (40%), Positives = 94/150 (62%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++  G++ + +ELR  +  +RP I + I+EAR  GDLSENAEY AAKE Q + E ++  
Sbjct: 3   YMSESGYNDLMEELRELETVQRPEISRQIAEARDKGDLSENAEYDAAKEAQGMLEMKINR 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ II  A +ID S +S D +    TV L    +G K  Y IV + EAD++ G +++S+P
Sbjct: 63  LKLIIADARIIDESKLSTDSVQILNTVELKNVKNGKKMKYTIVSESEADLRKGKIAVSTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+GK++GD+  +  P G  T E++ +
Sbjct: 123 IAQGLLGKKVGDVAEIKVPQGMITLEVVDI 152


>gi|262340920|ref|YP_003283775.1| transcription elongation factor GreA [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272257|gb|ACY40165.1| transcription elongation factor GreA [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 160

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 98/158 (62%), Gaps = 2/158 (1%)

Query: 2   VDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++K   +T +G  K+Q+E+   +  ERP+I   I+EAR  GDLSENAEY A KE Q   E
Sbjct: 1   MEKFEYITKEGLKKLQKEIERLENIERPKISMQIAEARDKGDLSENAEYDAIKEAQGFLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             +A+L+  ++ A +ID + ++  R++  +TV +     G ++ Y +V + EAD++SG +
Sbjct: 61  MNIAKLKKKLSNARIIDGTQINRTRVSILSTVRVKNLTYGGEQIYTLVPEGEADLKSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           SI++PI+  L+GK++G I  +  P      YEIL++ +
Sbjct: 121 SINTPISTGLLGKQVGQIAHIKLPNKMILDYEILEIAF 158


>gi|308188422|ref|YP_003932553.1| Transcription elongation factor greB [Pantoea vagans C9-1]
 gi|308058932|gb|ADO11104.1| Transcription elongation factor greB [Pantoea vagans C9-1]
          Length = 157

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +GFDK++ EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTRLITREGFDKLKAELDYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + +  ++D S     ++ FGA V +       K  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKSLEQLRIVDYSPQQDGKVFFGAWVEIENDEGDLK-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+GD  +V  P G   + +  + +
Sbjct: 120 IDSPMARALLKKEVGDAATVETPLGPALWYVNAIDY 155


>gi|327439572|dbj|BAK15937.1| transcription elongation factor [Solibacillus silvestris StLB046]
          Length = 161

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/162 (37%), Positives = 95/162 (58%), Gaps = 7/162 (4%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T  G  K++ EL   +  +RP +++ I  AR++GDLSEN+EY +AKE Q  
Sbjct: 1   MSNEKQYPMTLDGKQKLEDELNTLKTVKRPEVVERIKVARSFGDLSENSEYDSAKEEQGF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS----GDKKNYQIVGDQEAD 114
            EGR++ +E ++  A +I     S   I+ G TV+  E  +      +++Y IVG  EAD
Sbjct: 61  VEGRISLIEQMLRNAVIITEDETSNT-ISLGKTVTFDELINGKRANFEESYTIVGSAEAD 119

Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
              G +S  SPIA+AL+GK + D++ +  PGGE    IL+V 
Sbjct: 120 PMEGKISNDSPIAKALMGKHVDDVVKLTTPGGEMEVIILEVK 161


>gi|251794119|ref|YP_003008850.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2]
 gi|247541745|gb|ACS98763.1| transcription elongation factor GreA [Paenibacillus sp. JDR-2]
          Length = 158

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK I +T  G  K+++EL   +  +R  + + I  A  YGD+SEN+EY+ AK  Q   
Sbjct: 1   MSDKEIILTQDGLKKLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A +I+   +  D ++ G+ V++ +   GD   Y IVG  E+D     
Sbjct: 61  EGRIITLEKMLRNARIINNDEIDTDTVSIGSVVTVEDLEFGDTMEYAIVGSAESDPLRNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +A++GK+ G ++ V+ P G   Y+I+ + 
Sbjct: 121 ISNESPVGKAILGKKRGTVVDVSVPAGIIQYKIVDIK 157


>gi|226944394|ref|YP_002799467.1| transcription elongation factor GreB [Azotobacter vinelandii DJ]
 gi|226719321|gb|ACO78492.1| transcription elongation factor protein [Azotobacter vinelandii DJ]
          Length = 165

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 89/151 (58%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL       RP++ +A+SEA A GD SENAEY   K++    + R+  L
Sbjct: 15  ITPEGEARLRAELHELWHVRRPQVTQAVSEAAAQGDRSENAEYTYGKKMLREIDSRVRFL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              + + +V+       +++ FGA V+L +++      Y+IVG  E D++  L+SI +P+
Sbjct: 75  TKRLEKLQVVGERPADLNKVYFGAWVTLEDEDGEQV-RYRIVGPDELDLKQNLISIDAPL 133

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+GKEL   + V  P GEKT+ ++ + +
Sbjct: 134 ARALVGKELDAEVRVPTPTGEKTWYLVAIDY 164


>gi|262401668|ref|ZP_06078234.1| transcription elongation factor GreA [Vibrio sp. RC586]
 gi|262352085|gb|EEZ01215.1| transcription elongation factor GreA [Vibrio sp. RC586]
          Length = 157

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 72/158 (45%), Positives = 118/158 (74%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T++G +K+ +E   R  + RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++TM  + ++ FGATV++++ N+ ++K YQIVGD EAD++SG +
Sbjct: 60  QIRDIEYKLSVAQVIDVTTMENNGKVIFGATVTVIDVNTDEEKTYQIVGDDEADIKSGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK  GD +++  PGG K +EI +V ++
Sbjct: 120 SVNSPIARGLIGKLEGDEVAIATPGGNKDFEIDRVEYL 157


>gi|150021255|ref|YP_001306609.1| transcription elongation factor GreA [Thermosipho melanesiensis
           BI429]
 gi|166201184|sp|A6LMS3|GREA_THEM4 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|149793776|gb|ABR31224.1| transcription elongation factor GreA [Thermosipho melanesiensis
           BI429]
          Length = 156

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/154 (38%), Positives = 94/154 (61%), Gaps = 2/154 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           + I +T +G++K++ EL   +Q+    I + I EAR  GDLSEN+EYQ AK  Q     R
Sbjct: 4   EVIYLTKEGYEKLKTELDNLKQKLMFEIAERIKEARELGDLSENSEYQEAKNEQGRIAAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELEN++++AEVI+   +  + I  G  V +    +G++K  QIV   EADV +  +S 
Sbjct: 64  INELENMLSKAEVIE--GLDTNVINIGNWVIIKNLETGEEKTIQIVTPHEADVFNNKISF 121

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SPI R L+GK++G+++ + AP G   Y+IL + 
Sbjct: 122 ESPIGRILVGKKVGEVVKIKAPKGVFKYQILGIK 155


>gi|227112177|ref|ZP_03825833.1| transcription elongation factor GreB [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 159

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+DK++ E       +RP I K +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTNLITREGYDKLRAEHDHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-QSGLV 120
           R+  L   +T  +++D S      + FGA V +  +    K   +IVG  E        +
Sbjct: 61  RVRYLRKCLTELKIVDYSPQQDGSVFFGAWVEIENEQGEVK-RLRIVGPDEIYGDNKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI SP+ARA++ K + +  +VN P G + + +  + ++
Sbjct: 120 SIDSPMARAMLKKAVDEEFTVNTPDGPREWFVNSIDYV 157


>gi|253576833|ref|ZP_04854158.1| transcription elongation factor GreA [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251843700|gb|EES71723.1| transcription elongation factor GreA [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 158

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK + +T  G  ++++EL   +  +R  + + I  A  YGD+SEN+EY+ AK  Q   
Sbjct: 1   MSDKEVILTQDGLKRLEEELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A +I+   +  D ++ G+ V++ +   GD   Y IVG  E+D     
Sbjct: 61  EGRIITLEKMLRNARIINNDEIDTDTVSIGSIVTVEDLEFGDTMEYAIVGTAESDPMQNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +A++GK+ G I+ VN P G   Y+I+ + 
Sbjct: 121 ISNESPVGKAILGKKKGAIVDVNVPAGVIQYKIVDIK 157


>gi|319897915|ref|YP_004136112.1| transcription elongation factor [Haemophilus influenzae F3031]
 gi|317433421|emb|CBY81802.1| transcription elongation factor [Haemophilus influenzae F3031]
          Length = 158

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 83/157 (52%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWLVLDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V L  +       Y+IVG  E       +
Sbjct: 61  RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEEGE-TNQYRIVGCDEFAPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK L D + V  P G  T  I ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156


>gi|52426263|ref|YP_089400.1| transcription elongation factor GreB [Mannheimia succiniciproducens
           MBEL55E]
 gi|52308315|gb|AAU38815.1| GreA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 158

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G++ + QEL++  ++ERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRAGWNVLDQELKYLWKDERPKVTQAVSDAAAMGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA + L  ++   K+ Y+IVG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYNPKQEGKVFFGAWIELENESGEIKQ-YRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK++ D + V  P G+    +  + +
Sbjct: 120 SIDSPVARALIGKQIDDEVRVETPAGKVLLYVNNIWY 156


>gi|21243461|ref|NP_643043.1| transcription elongation factor GreB [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|25452986|sp|Q8PJ11|GREB_XANAC RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|21109017|gb|AAM37579.1| transcription elongation factor and transcript cleavage
           [Xanthomonas axonopodis pv. citri str. 306]
          Length = 168

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 82/151 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL    +  RP +++A++ A A GD SENAEY   K+     + R+  L
Sbjct: 15  ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+D +    + + FGA V L +  SG+   Y+IVG  E D   G +SI SP+
Sbjct: 75  SKRLEALRVVDTAPTDANAVFFGAQVELEDAGSGELLRYRIVGPDETDAGRGWISIDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+ K + D    + P G+ T+ ++ V +
Sbjct: 135 ARALLKKRVDDEFDAHLPAGKHTFVVVSVDY 165


>gi|288933209|ref|YP_003437268.1| GreA/GreB family elongation factor [Klebsiella variicola At-22]
 gi|290512013|ref|ZP_06551381.1| transcription elongation factor GreB [Klebsiella sp. 1_1_55]
 gi|288887938|gb|ADC56256.1| GreA/GreB family elongation factor [Klebsiella variicola At-22]
 gi|289775803|gb|EFD83803.1| transcription elongation factor GreB [Klebsiella sp. 1_1_55]
          Length = 157

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++QE+ +  ++ERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYEKLKQEMDYLWRQERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + + +++D S     ++ FGA V +       K  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCLEQLKIVDYSPQQEGKVFFGAWVEIENDEGDTK-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ + ++ ++
Sbjct: 120 IDSPMARALLKKEVGDLAIVNTPAGEASWYVNEIEYV 156


>gi|161505931|ref|YP_001573043.1| transcription elongation factor GreB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867278|gb|ABX23901.1| hypothetical protein SARI_04112 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 157

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++ ++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D +     ++ FGA V +   + GD   ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCMENLKIVDYAPQQEGKVFFGAWVEIENDD-GDTLKFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE  + +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPVGEANWYVNAIEYV 156


>gi|326318293|ref|YP_004235965.1| transcription elongation factor GreB [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375129|gb|ADX47398.1| transcription elongation factor GreB [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 189

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/155 (33%), Positives = 83/155 (53%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL      ERP++++ +  A + GD SEN +Y   K+     + R+
Sbjct: 30  KNYMTPAGYARLRSELLELMDNERPKVVEVVHWAASNGDRSENGDYLYGKKRLREIDRRI 89

Query: 64  AELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D S     D++ FGATV+ V+     ++   I+G  E D     VS 
Sbjct: 90  RFLTKRLDMAEVVDPSLHHGSDQVFFGATVTYVDDL-DVERTVTILGIDEVDSSQSQVSW 148

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+    GD + +  PGG +T EIL+V +
Sbjct: 149 VSPVARALLKAREGDEVRLGTPGGLRTLEILRVEY 183


>gi|161869630|ref|YP_001598797.1| transcription elongation factor GreB [Neisseria meningitidis
           053442]
 gi|296314716|ref|ZP_06864657.1| transcription elongation factor GreB [Neisseria polysaccharea ATCC
           43768]
 gi|161595183|gb|ABX72843.1| transcription elongation factor [Neisseria meningitidis 053442]
 gi|296838551|gb|EFH22489.1| transcription elongation factor GreB [Neisseria polysaccharea ATCC
           43768]
          Length = 163

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 71/155 (45%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A   GD SEN +Y   K      + R+
Sbjct: 6   KNYITPAGWQALKDELYRLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F      + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLESAVVVDPELREATDQVFFGATVGLLRGDGREQTVKIVGIDEIDTAQNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR LI    GD + +N P G +  EIL V +I
Sbjct: 126 SPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160


>gi|83589023|ref|YP_429032.1| GreA/GreB family elongation factor [Moorella thermoacetica ATCC
           39073]
 gi|83571937|gb|ABC18489.1| GreA/GreB family elongation factor [Moorella thermoacetica ATCC
           39073]
          Length = 160

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 92/156 (58%), Gaps = 1/156 (0%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T+ G  K+++EL + +  +R  + + + +A  +GD+SEN+EY+ AK  Q   
Sbjct: 1   MAEKETLLTANGLKKLEEELEYLKTVKRQEVAERLKQAIEFGDISENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE  +  A+VI  S +  D ++ G+ V+L + + G++  Y+IVG  EAD     
Sbjct: 61  EGRILTLEKKLRNAKVIVASEVPDDVVSLGSRVTLKDLDEGEEIQYEIVGSMEADPAENR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SP+ +AL+G   G+ +++  P G   Y+IL +
Sbjct: 121 ISNESPVGKALLGHHTGETVTIQVPAGNLRYQILNI 156


>gi|157363383|ref|YP_001470150.1| transcription elongation factor GreA [Thermotoga lettingae TMO]
 gi|157313987|gb|ABV33086.1| transcription elongation factor GreA [Thermotoga lettingae TMO]
          Length = 163

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 98/157 (62%), Gaps = 4/157 (2%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  K  I +T +G+++++QEL   +Q+    I + I EAR  GDLSEN EY  AK  Q  
Sbjct: 1   MNKKNVIYLTKEGYEELKQELDSLKQKLMYEISERIKEARELGDLSENTEYDEAKNEQGR 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
              R+ ELE I+  +E+I+      ++I+ G+ V +   N+G++++ ++V  QEAD+ S 
Sbjct: 61  IGSRITELEQILNNSEIIE--NTDSNQISVGSYVIIKNLNTGEERSVRLVNPQEADIFSN 118

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S+ SP+ RAL+G+++G+++ + AP G   YEIL +
Sbjct: 119 KISVDSPVGRALMGRKVGEVVKLKAPAGSVRYEILGI 155


>gi|261823310|ref|YP_003261416.1| transcription elongation factor GreB [Pectobacterium wasabiae
           WPP163]
 gi|261607323|gb|ACX89809.1| transcription elongation factor GreB [Pectobacterium wasabiae
           WPP163]
          Length = 159

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+DK++ E       +RP I K +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTNLITREGYDKLRAEHEHLWNVKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +T  +++D S      + FGA V +  +    K   +IVG  E        +
Sbjct: 61  RVRYLRKCLTELKIVDYSPQQDGSVFFGAWVEIENEQGDVK-RLRIVGPDEIYGDSKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI SP+ARA++ K + +  +VN P G + + +  + ++
Sbjct: 120 SIDSPMARAMLKKAVDEEFTVNTPDGPREWFVNAIDYV 157


>gi|261377902|ref|ZP_05982475.1| transcription elongation factor GreB [Neisseria cinerea ATCC 14685]
 gi|269145757|gb|EEZ72175.1| transcription elongation factor GreB [Neisseria cinerea ATCC 14685]
          Length = 163

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 72/155 (46%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A   GD SEN +Y   K      + R+
Sbjct: 6   KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F +    + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLEAAVVVDPELREATDQVFFSATVGLLRGDGREQTVKIVGVDEIDTAQNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR LI    GD + +N P G +  EIL V +I
Sbjct: 126 SPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160


>gi|119776641|ref|YP_929381.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
 gi|119769141|gb|ABM01712.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
          Length = 165

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/158 (34%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T KG++ + +EL++  +E RP I   + EA A GD SENA+Y   K L    
Sbjct: 1   MTEKAHLITRKGWEALDKELKYLWKEYRPEITLKVQEAAAQGDRSENADYTYNKRLLRQI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           + R+  L   +   +++D S     ++ FGA V L          Y+IVG  E D + G 
Sbjct: 61  DSRVRYLIKRLEVLKIVDYSPQQEGKVFFGAWVELENDEGA-VVRYRIVGKDEIDTKKGY 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ++I SP+ARALIGK++ D + V  P G K + I ++ +
Sbjct: 120 ITIDSPMARALIGKQVDDEVVVQTPSGRKEWFINEIRY 157


>gi|59800713|ref|YP_207425.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA
           1090]
 gi|194097981|ref|YP_002001029.1| transcription elongation factor GreB [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998449|ref|ZP_04718373.1| transcription elongation factor GreB [Neisseria gonorrhoeae 35/02]
 gi|240013574|ref|ZP_04720487.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI18]
 gi|240016013|ref|ZP_04722553.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA6140]
 gi|240080154|ref|ZP_04724697.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA19]
 gi|240112368|ref|ZP_04726858.1| transcription elongation factor GreB [Neisseria gonorrhoeae MS11]
 gi|240115108|ref|ZP_04729170.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID18]
 gi|240117391|ref|ZP_04731453.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID1]
 gi|240120643|ref|ZP_04733605.1| transcription elongation factor GreB [Neisseria gonorrhoeae
           PID24-1]
 gi|240122948|ref|ZP_04735904.1| transcription elongation factor GreB [Neisseria gonorrhoeae PID332]
 gi|240125199|ref|ZP_04738085.1| transcription elongation factor GreB [Neisseria gonorrhoeae
           SK-92-679]
 gi|240127654|ref|ZP_04740315.1| transcription elongation factor GreB [Neisseria gonorrhoeae
           SK-93-1035]
 gi|254493169|ref|ZP_05106340.1| transcription elongation factor greB [Neisseria gonorrhoeae 1291]
 gi|260441075|ref|ZP_05794891.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI2]
 gi|268594310|ref|ZP_06128477.1| transcription elongation factor GreB [Neisseria gonorrhoeae 35/02]
 gi|268596305|ref|ZP_06130472.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA19]
 gi|268598428|ref|ZP_06132595.1| transcription elongation factor greB [Neisseria gonorrhoeae MS11]
 gi|268600782|ref|ZP_06134949.1| transcription elongation factor greB [Neisseria gonorrhoeae PID18]
 gi|268603087|ref|ZP_06137254.1| transcription elongation factor greB [Neisseria gonorrhoeae PID1]
 gi|268681568|ref|ZP_06148430.1| transcription elongation factor greB [Neisseria gonorrhoeae PID332]
 gi|268683796|ref|ZP_06150658.1| transcription elongation factor greB [Neisseria gonorrhoeae
           SK-92-679]
 gi|268686038|ref|ZP_06152900.1| transcription elongation factor greB [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291044409|ref|ZP_06570118.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI2]
 gi|293399588|ref|ZP_06643741.1| transcription elongation factor GreB [Neisseria gonorrhoeae F62]
 gi|59717608|gb|AAW89013.1| putative transcription elongation [Neisseria gonorrhoeae FA 1090]
 gi|193933271|gb|ACF29095.1| transcription elongation factor GreB [Neisseria gonorrhoeae
           NCCP11945]
 gi|226512209|gb|EEH61554.1| transcription elongation factor greB [Neisseria gonorrhoeae 1291]
 gi|268547699|gb|EEZ43117.1| transcription elongation factor GreB [Neisseria gonorrhoeae 35/02]
 gi|268550093|gb|EEZ45112.1| transcription elongation factor GreB [Neisseria gonorrhoeae FA19]
 gi|268582559|gb|EEZ47235.1| transcription elongation factor greB [Neisseria gonorrhoeae MS11]
 gi|268584913|gb|EEZ49589.1| transcription elongation factor greB [Neisseria gonorrhoeae PID18]
 gi|268587218|gb|EEZ51894.1| transcription elongation factor greB [Neisseria gonorrhoeae PID1]
 gi|268621852|gb|EEZ54252.1| transcription elongation factor greB [Neisseria gonorrhoeae PID332]
 gi|268624080|gb|EEZ56480.1| transcription elongation factor greB [Neisseria gonorrhoeae
           SK-92-679]
 gi|268626322|gb|EEZ58722.1| transcription elongation factor greB [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291011303|gb|EFE03299.1| transcription elongation factor GreB [Neisseria gonorrhoeae DGI2]
 gi|291610157|gb|EFF39279.1| transcription elongation factor GreB [Neisseria gonorrhoeae F62]
 gi|317163732|gb|ADV07273.1| transcription elongation factor GreB [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 163

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 71/155 (45%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A   GD SEN +Y   K      + R+
Sbjct: 6   KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F      + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLEAAVVVDPELREATDQVFFGATVGLLRGDGREQTVKIVGVDEIDTAQNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR LI    GD + +N P G +  EIL V +I
Sbjct: 126 SPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160


>gi|218767812|ref|YP_002342324.1| transcription elongation factor GreB [Neisseria meningitidis Z2491]
 gi|34222639|sp|Q9JVD0|GREB_NEIMA RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|121051820|emb|CAM08126.1| putative transcription elongation factor [Neisseria meningitidis
           Z2491]
 gi|319410062|emb|CBY90396.1| transcription elongation factor GreB (transcript cleavage factor
           GreB) [Neisseria meningitidis WUE 2594]
          Length = 163

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 71/155 (45%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A   GD SEN +Y   K      + R+
Sbjct: 6   KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F      + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLEAAVVVDPELREATDQVFFGATVGLLRGDGREQTVKIVGIDEIDTAQNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR LI    GD + +N P G +  EIL V +I
Sbjct: 126 SPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160


>gi|307254163|ref|ZP_07536008.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258626|ref|ZP_07540361.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306862863|gb|EFM94812.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867283|gb|EFM99136.1| Transcription elongation factor greB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 162

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + QEL++  ++ERP++ +A+SEA A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ FGA V L  +    K+ Y+IVG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYHPKQEGKVFFGAWVELENEQGETKQ-YRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGKE  D I V+ P G+    I ++ +
Sbjct: 120 SIDSPVARALIGKEADDEIKVDTPLGKSLLYINKIWY 156


>gi|310829433|ref|YP_003961790.1| GreA/GreB family elongation factor [Eubacterium limosum KIST612]
 gi|308741167|gb|ADO38827.1| GreA/GreB family elongation factor [Eubacterium limosum KIST612]
          Length = 161

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 91/154 (59%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +++ +T +G D +++ L + +  +R  +   I  AR YGDLSENAEY  AK  Q   EG 
Sbjct: 7   EELVMTQEGLDNLKKRLEYLKTVKRYEVAARIKTAREYGDLSENAEYDEAKSEQGFVEGE 66

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           ++ELE  I + +VID + +  + +  G+ V + +   GD + Y+IVG  E+D+    +S 
Sbjct: 67  ISELEAKIKKVKVIDDNDIHTEDVGVGSIVKVKDLEFGDTEEYKIVGSAESDIAQNKLSN 126

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ R LIG ++G ++++  P GE  YEIL + 
Sbjct: 127 ESPVGRGLIGAKVGQVVTIPIPDGEVQYEILDIR 160


>gi|294625096|ref|ZP_06703742.1| transcription elongation factor GreB [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664556|ref|ZP_06729899.1| transcription elongation factor GreB [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292600605|gb|EFF44696.1| transcription elongation factor GreB [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292605664|gb|EFF48972.1| transcription elongation factor GreB [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 168

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 83/151 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL    +  RP +++A++ A A GD SENAEY   K+     + R+  L
Sbjct: 15  ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+D +    + + FGA V L + +SG+   Y+IVG  E D   G +SI SP+
Sbjct: 75  SKRLEALRVVDTAPTDANAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+ K + D    + P G+ T+ ++ V +
Sbjct: 135 ARALLKKRVDDEFDAHLPAGKHTFVVVSVDY 165


>gi|261212255|ref|ZP_05926541.1| transcription elongation factor GreA [Vibrio sp. RC341]
 gi|260838863|gb|EEX65514.1| transcription elongation factor GreA [Vibrio sp. RC341]
          Length = 157

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 73/158 (46%), Positives = 117/158 (74%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G +K+ +E   R  + RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTLRG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++TM  + ++ FGATV+L++ N+ ++K YQIVGD EAD++SG +
Sbjct: 60  QIRDIEYKLSVAQVIDVTTMENNGKVIFGATVTLIDVNTDEEKTYQIVGDDEADIKSGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S++SPIAR LIGK  GD +++  PGG K +EI +V ++
Sbjct: 120 SVNSPIARGLIGKMEGDEVAIVTPGGNKDFEIDRVEYL 157


>gi|152972284|ref|YP_001337430.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238896873|ref|YP_002921618.1| transcription elongation factor GreB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262045242|ref|ZP_06018268.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330012470|ref|ZP_08307384.1| transcription elongation factor GreB [Klebsiella sp. MS 92-3]
 gi|150957133|gb|ABR79163.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549200|dbj|BAH65551.1| transcription elongation factor [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259037452|gb|EEW38697.1| transcription elongation factor GreB [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328533821|gb|EGF60500.1| transcription elongation factor GreB [Klebsiella sp. MS 92-3]
          Length = 157

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 91/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++QE+ +  ++ERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYEKLKQEMDYLWRQERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + + +++D S     ++ FGA V +       K  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCLEQLKIVDYSPQQEGKVFFGAWVEIENDEGDIK-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ + ++ ++
Sbjct: 120 IDSPMARALLKKEVGDLAIVNTPAGEASWYVNEIEYV 156


>gi|127514564|ref|YP_001095761.1| transcription elongation factor GreB [Shewanella loihica PV-4]
 gi|126639859|gb|ABO25502.1| transcription elongation factor GreB [Shewanella loihica PV-4]
          Length = 160

 Score =  127 bits (319), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 89/156 (57%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  + +T +G+  + +EL++  +E RP I K + EA A GD SENA+Y   K L    + 
Sbjct: 1   MKAMLITREGWQALDRELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V L ++       Y+IVG  E D + G ++
Sbjct: 61  RVRYLVKRVEDLQIVDYSPQQEGKVFFGAWVELEDETGKIV-RYRIVGKDELDTKLGYIT 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALIGK++ D + VN P G+K + + ++ +
Sbjct: 120 IDSPMARALIGKQVDDEVVVNTPAGKKEWYVNKIQY 155


>gi|293115788|ref|ZP_05793017.2| transcription elongation factor GreA [Butyrivibrio crossotus DSM
           2876]
 gi|292808216|gb|EFF67421.1| transcription elongation factor GreA [Butyrivibrio crossotus DSM
           2876]
          Length = 165

 Score =  127 bits (319), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 87/157 (55%), Gaps = 2/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T +G  K++ EL+  +   R  + + I EAR  GDLSENAEY AAK+ Q   
Sbjct: 8   MAEKKNLMTYEGLKKLEDELQDLKVNRRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 67

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ E+E I+  AEV D    +   I  G+TV++ +    ++  +++VG  EA      
Sbjct: 68  EARIEEIEKILKNAEVADDEFGA-GVINLGSTVTVYDCEFDEELVFKLVGSTEAKSLENK 126

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  +P+ +ALIGK  GD + V  P G   Y+++ V 
Sbjct: 127 ISNEAPLGKALIGKVAGDEVEVETPSGIMKYKVINVT 163


>gi|260771182|ref|ZP_05880109.1| transcription elongation factor GreA [Vibrio furnissii CIP 102972]
 gi|260613779|gb|EEX38971.1| transcription elongation factor GreA [Vibrio furnissii CIP 102972]
 gi|315179211|gb|ADT86125.1| transcription elongation factor GreA [Vibrio furnissii NCTC 11218]
          Length = 157

 Score =  127 bits (319), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 71/158 (44%), Positives = 116/158 (73%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G +K+ ++   R  + RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTVRG-EKLLRDELDRLLKLRPKISEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M    +I FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60  QIRDIEFKLSVAQVIDVTKMDNSGKIIFGSTVTLIDVDTDEEKTYQIVGDDEADIKAGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR LIGK  GD ++++ PGGEK +EI  V ++
Sbjct: 120 SVSSPIARGLIGKMEGDEVTISTPGGEKVFEIDHVDYV 157


>gi|319775510|ref|YP_004137998.1| transcription elongation factor [Haemophilus influenzae F3047]
 gi|329122448|ref|ZP_08251035.1| transcription elongation factor GreB [Haemophilus aegyptius ATCC
           11116]
 gi|317450101|emb|CBY86315.1| transcription elongation factor [Haemophilus influenzae F3047]
 gi|327473730|gb|EGF19149.1| transcription elongation factor GreB [Haemophilus aegyptius ATCC
           11116]
          Length = 162

 Score =  127 bits (319), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  +EER ++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWLALDQELKFLWKEERSKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V L  +    K+ Y+IVG  E       +
Sbjct: 61  RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEEGETKQ-YRIVGCDEFAPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK L D + V  P G  T  I ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156


>gi|254241524|ref|ZP_04934846.1| transcription elongation factor GreB [Pseudomonas aeruginosa 2192]
 gi|126194902|gb|EAZ58965.1| transcription elongation factor GreB [Pseudomonas aeruginosa 2192]
          Length = 168

 Score =  127 bits (319), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL        P++ +A+SEA A GD SENAEY   K++    + R+  L
Sbjct: 15  ITPEGAARLRAELHELWHVRCPQVTQAVSEAAALGDRSENAEYIYGKKMLREIDSRVRFL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +   +V+       +R+ FGA V+L +++      Y+IVG  E D+++  +SI SP+
Sbjct: 75  RKRLENLKVVGERPADPNRVYFGAWVTLEDEDGEQ-ARYRIVGPDELDLRNNQISIDSPL 133

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+GKEL   + V  P GEK + ++++ +
Sbjct: 134 ARALVGKELDAEVLVRTPAGEKLWFVVEIEY 164


>gi|255657691|ref|ZP_05403100.1| transcription elongation factor GreA [Mitsuokella multacida DSM
           20544]
 gi|260849878|gb|EEX69885.1| transcription elongation factor GreA [Mitsuokella multacida DSM
           20544]
          Length = 156

 Score =  127 bits (319), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 90/157 (57%), Gaps = 3/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK + +T +G++K+ ++L + +  +R  I + +  A A GDLSEN+EY  AK  Q   
Sbjct: 1   MADKQVMLTEEGYNKLVEKLNYLKSVKRIEIAQRLKAAIALGDLSENSEYDDAKNEQAFL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG + +L   I  + +I       D +  G+ V++ +   GD++ + +VG  EAD   G 
Sbjct: 61  EGEIQDLTAKIRNSHIIKAGAG--DVVQMGSKVTVKDIEFGDEETFMLVGSTEADPDEGK 118

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +AL+G++ G +I V+AP G   YEIL + 
Sbjct: 119 ISNESPLGQALLGQKSGSVIDVHAPAGIIKYEILDIK 155


>gi|319943395|ref|ZP_08017677.1| transcription elongation factor GreB [Lautropia mirabilis ATCC
           51599]
 gi|319743210|gb|EFV95615.1| transcription elongation factor GreB [Lautropia mirabilis ATCC
           51599]
          Length = 186

 Score =  127 bits (319), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL      ERP +++ +S A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYITRAGYQALRDELSHLLDVERPEVVQVVSWAASNGDRSENGDYLYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   I RAEV++ S     D++ FGATV+  E + G ++  QIVG  E D  +G +S 
Sbjct: 89  RFLIRRIDRAEVVEPSAHHGNDQVFFGATVTYSEPD-GTERRVQIVGVDETDPLAGKISW 147

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARALI    GD +S+  P G     I  V +
Sbjct: 148 VSPVARALIKAREGDEVSLMTPQGRMELLIESVEY 182


>gi|15676587|ref|NP_273731.1| transcription elongation factor GreB [Neisseria meningitidis MC58]
 gi|34222642|sp|Q9K0C5|GREB_NEIMB RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|7225917|gb|AAF41107.1| transcription elongation factor GreB [Neisseria meningitidis MC58]
 gi|316983663|gb|EFV62644.1| transcription elongation factor GreB [Neisseria meningitidis
           H44/76]
 gi|325139932|gb|EGC62462.1| transcription elongation factor GreB [Neisseria meningitidis CU385]
 gi|325200625|gb|ADY96080.1| transcription elongation factor GreB [Neisseria meningitidis
           H44/76]
          Length = 163

 Score =  127 bits (319), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 72/155 (46%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A   GD SEN +Y   K      + R+
Sbjct: 6   KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F      + ++ G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLEAAVVVDPELREATDQVFFGATVGLLRDDGREQTVKIVGIDEIDTAQNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR LI    GD + +N P G +  EIL V +I
Sbjct: 126 SPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160


>gi|325202515|gb|ADY97969.1| transcription elongation factor GreB [Neisseria meningitidis
           M01-240149]
          Length = 163

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 71/155 (45%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A   GD SEN +Y   K      + R+
Sbjct: 6   KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F      + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLEAAVVVDPELREATDQVFFGATVGLLRGDGREQTVKIVGIDEIDTAQNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR LI    GD + +N P G +  EIL V +I
Sbjct: 126 SPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160


>gi|309792630|ref|ZP_07687091.1| transcription elongation factor GreA [Oscillochloris trichoides
           DG6]
 gi|308225352|gb|EFO79119.1| transcription elongation factor GreA [Oscillochloris trichoides
           DG6]
          Length = 157

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK   +T  G  K++ EL      ER  + + I+ A+  GD+SE+ EY+ AK+ Q L 
Sbjct: 1   MTDKPTYLTRDGRAKLEAELEELTTVERKHVAERIAAAKELGDISESGEYEDAKKSQALL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+ EL++I++RAE+ID    S   +  G++V++  +   +++ + IVG  EA+ + G 
Sbjct: 61  EGRIRELKHILSRAELIDEDAHSTGEVRVGSSVTVRLEEDNEEETWTIVGSAEANPRQGR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPI  AL+GK     ++V  P G     IL+V 
Sbjct: 121 ISNESPIGAALLGKRARSKVTVQTPSGVMKLTILKVK 157


>gi|320157698|ref|YP_004190077.1| transcription elongation factor GreB [Vibrio vulnificus MO6-24/O]
 gi|319933010|gb|ADV87874.1| transcription elongation factor GreB [Vibrio vulnificus MO6-24/O]
          Length = 160

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++QEL +  +E RP I + +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKMITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +   +++D +     ++ FGA V +  +       ++IVG +E      G +
Sbjct: 61  RVRFLSKFLPEVKIVDYAPQQEGKVFFGAWVEIENEAGE-VMKFRIVGPEEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+ D + V  P G K + I  + +
Sbjct: 120 SIDSPMARALLKKEVDDEVQVPTPSGIKEWFINSIEY 156


>gi|325662823|ref|ZP_08151392.1| hypothetical protein HMPREF0490_02132 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086546|ref|ZP_08335624.1| hypothetical protein HMPREF0987_01927 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470875|gb|EGC74104.1| hypothetical protein HMPREF0490_02132 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330410379|gb|EGG89811.1| hypothetical protein HMPREF0987_01927 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 160

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK   +T  G   +++EL   +  +R  +   I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MADKKTILTYAGLKALEEELENLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ E+E I+  AEV+    +  D+I  G +V + +K   ++  ++IVG  EA+   G 
Sbjct: 61  EARIEEIEKILKNAEVVVEDEVDFDKINIGCSVLVYDKEFDEEIQFKIVGSTEANSLQGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +AL+GK++GD I V    G   Y++L++ 
Sbjct: 121 ISNESPVGQALLGKKVGDEIQVETQAGVMEYKVLKIE 157


>gi|218133837|ref|ZP_03462641.1| hypothetical protein BACPEC_01726 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991212|gb|EEC57218.1| hypothetical protein BACPEC_01726 [Bacteroides pectinophilus ATCC
           43243]
          Length = 160

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 61/157 (38%), Positives = 91/157 (57%), Gaps = 2/157 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           MV+  K  +T  G  +++ EL+  +   R  + + + EARA GDLSENAEY AAK+ Q  
Sbjct: 1   MVENKKNILTYTGLKQLEDELQQLKVVRRQEVAEKLKEARAQGDLSENAEYDAAKDEQRD 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ELENI+  AEV+  + +  D+I  G  V L +    ++  + IVG  EA+    
Sbjct: 61  IEARIEELENILKNAEVVVETEVDSDKINIGCIVKLFDFEFDEELEFSIVGSTEANSLKN 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+  ALIGK++GD+I V    GE  Y++L +
Sbjct: 121 KISNESPLGSALIGKKVGDVIKVETQMGEVEYKVLSI 157


>gi|68249169|ref|YP_248281.1| transcription elongation factor GreB [Haemophilus influenzae
           86-028NP]
 gi|148825152|ref|YP_001289905.1| transcription elongation factor GreB [Haemophilus influenzae
           PittEE]
 gi|68057368|gb|AAX87621.1| transcription elongation factor GreB [Haemophilus influenzae
           86-028NP]
 gi|148715312|gb|ABQ97522.1| transcription elongation factor GreB [Haemophilus influenzae
           PittEE]
          Length = 158

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWLVLDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V L  +    K+ Y+IVG  E       +
Sbjct: 61  RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEEGEIKQ-YRIVGCDEFAPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALIGK L D + V  P G  T  I ++ +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 156


>gi|153005528|ref|YP_001379853.1| transcription elongation factor GreB [Anaeromyxobacter sp. Fw109-5]
 gi|152029101|gb|ABS26869.1| transcription elongation factor GreB [Anaeromyxobacter sp. Fw109-5]
          Length = 169

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +GF ++  E       +RP+I+  +  A A GD SENAEY   K+     +
Sbjct: 8   MTKPRYITPEGFRRLASEHERIWSVDRPKIVAEVEAAAALGDRSENAEYVYGKKKLRELD 67

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V+D       R  FGA V++ +     +  +++VG  E DV +GL+
Sbjct: 68  RRLRFLSERMDALTVVDPRPHPHGRAFFGAWVTIEDDEGEAR-TFRLVGPDEFDVAAGLI 126

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+ +P+ RAL+GK+ GD +    P GE    I+ V W
Sbjct: 127 SVEAPLGRALLGKQEGDTVLFLRPAGEAELTIMAVRW 163


>gi|77361754|ref|YP_341329.1| transcription elongation factor and transcript cleavage
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876665|emb|CAI87887.1| transcription elongation factor and transcript cleavage
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 159

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+ ++QQE       +RP I K +S A + GD SENA+YQ  K L    + 
Sbjct: 1   MKTNLITREGYLQLQQEHTHLWNVKRPEITKIVSWAASLGDRSENADYQYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   I   ++ID S +   ++ FGA V +  +    K  ++IVG  E   +   +S
Sbjct: 61  RVRYLRKRIPDLKIIDYSPVQDGKVFFGAWVEIENEQGETK-KFKIVGPDEIYERKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ K++ D   V  P G+K + +  + +
Sbjct: 120 IDSPMARALLKKQVDDEFDVITPQGKKQWYVNSISY 155


>gi|261380528|ref|ZP_05985101.1| transcription elongation factor GreB [Neisseria subflava NJ9703]
 gi|284796784|gb|EFC52131.1| transcription elongation factor GreB [Neisseria subflava NJ9703]
          Length = 163

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 74/155 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A + GD SEN +Y   K      + R+
Sbjct: 6   KNYITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F +    + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLEAAVVVDPEAREATDQVFFSATVGLLRGDGREQTVKIVGVDEIDTAKNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR+LI    GD + +N P G +  EIL V +I
Sbjct: 126 SPLARSLIKAREGDEVVLNTPEGREVIEILSVEYI 160


>gi|166030714|ref|ZP_02233543.1| hypothetical protein DORFOR_00388 [Dorea formicigenerans ATCC
           27755]
 gi|166029506|gb|EDR48263.1| hypothetical protein DORFOR_00388 [Dorea formicigenerans ATCC
           27755]
          Length = 160

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 84/155 (54%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T  G   +++EL   +  +R  +   I EAR  GDLSENAEY AAK+ Q   E 
Sbjct: 3   AKKKLLTYAGLKALEEELENLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEA 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I+  AEV+    +  D+I  G TV   +    ++  +++VG  EA+   G +S
Sbjct: 63  RIEELEAILKNAEVVVEDEVDFDKINVGCTVKAYDITFDEEIEFKLVGSTEANSLEGKIS 122

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+  ALIGK +GD++ V    G   Y++L + 
Sbjct: 123 NESPVGHALIGKTIGDVVEVETQAGVMQYKVLDIT 157


>gi|238917593|ref|YP_002931110.1| transcription elongation factor GreA [Eubacterium eligens ATCC
           27750]
 gi|238872953|gb|ACR72663.1| transcription elongation factor GreA [Eubacterium eligens ATCC
           27750]
          Length = 158

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 84/156 (53%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +K  +T KG+D+    L   +   R  + + + EAR  GDLSENAEY AAK+ Q   E
Sbjct: 1   MAEKQFLTKKGYDERVARLEELKVVRRKEVAQKLKEAREQGDLSENAEYDAAKDEQRDIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             +AELE I+   EVI  +  + D +   + V L +    +   Y IVG  EAD  +  +
Sbjct: 61  TEIAELEAILANCEVIQDNDKNKDVVKMESVVVLHDVEIDEDIEYTIVGSSEADSLNNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SP+  ALIGK+ GD + V AP GE  Y ++ V 
Sbjct: 121 SNESPLGAALIGKKKGDTVKVEAPVGEIEYTVVSVK 156


>gi|206575923|ref|YP_002236222.1| transcription elongation factor GreB [Klebsiella pneumoniae 342]
 gi|206564981|gb|ACI06757.1| transcription elongation factor GreB [Klebsiella pneumoniae 342]
          Length = 157

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++QE+ +  + ERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYEKLKQEMDYLWRHERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + + +++D S     ++ FGA V +       K  ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCLEQLKIVDYSPQQEGKVFFGAWVEIENDEGDTK-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE ++ + ++ ++
Sbjct: 120 IDSPMARALLKKEVGDLAIVNTPAGEASWYVNEIEYV 156


>gi|296160041|ref|ZP_06842861.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
 gi|295889787|gb|EFG69585.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
          Length = 189

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 73/154 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL      ERP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 29  KNYITPAGYRRMRDELLHLIDVERPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AE++D S        F           G+     IVG  E D+    VS  
Sbjct: 89  RFLTKRLDLAEIVDSSKQENVDQVFFGATVEYATEDGEVHTVTIVGIDEVDLDIAHVSWI 148

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+  ++GD +++  P G +  +IL V +
Sbjct: 149 SPIARALLKAKIGDTVTLYTPAGPQPIDILDVKY 182


>gi|161486671|ref|NP_933028.2| transcription elongation factor GreB [Vibrio vulnificus YJ016]
 gi|60392329|sp|Q7MPX6|GREB_VIBVY RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
          Length = 160

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++QEL +  +E RP I + +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKMITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +   +++D +     ++ FGA V +  +       ++IVG +E      G +
Sbjct: 61  RVRFLSKFLPEVKIVDYAPQQEGKVFFGAWVEIENEAGE-VMKFRIVGPEEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+ D + V  P G K + I  + +
Sbjct: 120 SIDSPMARALLKKEVDDEVQVPTPSGIKEWFINSIEY 156


>gi|294668892|ref|ZP_06733982.1| transcription elongation factor GreB [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309189|gb|EFE50432.1| transcription elongation factor GreB [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 162

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 1/159 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M D    +T  G+  ++ EL     +ERP I++ ++ A + GD SEN +Y   K      
Sbjct: 1   MSDTPNYITPAGWRSLKDELYRLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           + R+  L   +  A+V+D  T       F      + + +G ++  +IVG  E D     
Sbjct: 61  DRRIRFLTKRLEAAQVVDPETREATDQIFFGATVTLLRGNGSEQTVKIVGIDEIDTAQNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S  SP+AR LI    GD +S+N P G +  EIL+V ++
Sbjct: 121 ISWISPLARCLIKAREGDEVSLNTPEGREDIEILEVAYV 159


>gi|312134579|ref|YP_004001917.1| grea/greb family elongation factor [Caldicellulosiruptor owensensis
           OL]
 gi|311774630|gb|ADQ04117.1| GreA/GreB family elongation factor [Caldicellulosiruptor owensensis
           OL]
          Length = 162

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 92/152 (60%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  ++ + ++K  +EL   +  +R  + + I  AR++GDLSEN+EY  AK  Q   E R+
Sbjct: 9   KYQLSREAYEKYLKELENLKTVKRKEVAEKIKVARSFGDLSENSEYDEAKAEQAALEERI 68

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           A LE +I  A++ID   +S D +  G  V +   ++GD   Y IVG +E+D  +  +S  
Sbjct: 69  AYLEQLINNAKIIDKDEVSTDFVGIGTNVKIQNLDTGDIVEYSIVGSKESDPLNFKISDE 128

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+ +AL+GK++GD++ V  P G+  Y+IL++
Sbjct: 129 SPVGKALMGKKVGDVVEVIVPAGKFRYKILEI 160


>gi|319638512|ref|ZP_07993274.1| transcription elongation factor greB [Neisseria mucosa C102]
 gi|317400261|gb|EFV80920.1| transcription elongation factor greB [Neisseria mucosa C102]
          Length = 163

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 74/155 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A + GD SEN +Y   K      + R+
Sbjct: 6   KNYITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F      + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLEAAVVVDPEAREATDQIFFGATVGLLRGDGREQTVKIVGVDEIDTAKNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR+LI    GD + +N P G++  EIL V +I
Sbjct: 126 SPLARSLIKAREGDEVVLNTPEGQEVIEILSVEYI 160


>gi|209693811|ref|YP_002261739.1| transcription elongation factor GreB [Aliivibrio salmonicida
           LFI1238]
 gi|208007762|emb|CAQ77881.1| transcription elongation factor GreB [Aliivibrio salmonicida
           LFI1238]
          Length = 155

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +GF+K+Q EL +  +E+RP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTNLITREGFNKLQDELTFLWKEDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + + +V+D S     ++ FGA V +  +  GD  +++IVG  E   +   +S
Sbjct: 61  RVRYLRKRLDQVKVVDYSPQQDGKVFFGAFVVIENEQ-GDTLSFRIVGPDEIFGRHDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALI KE+ +   V  P G+K + +  + +
Sbjct: 120 IDSPMARALIKKEVDEEAIVKTPEGDKEWFVNSIKY 155


>gi|319787549|ref|YP_004147024.1| transcription elongation factor GreB [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466061|gb|ADV27793.1| transcription elongation factor GreB [Pseudoxanthomonas suwonensis
           11-1]
          Length = 166

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 83/151 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G D+++ EL    + +RP ++KA++ A A GD SENAEY   K+     + R+  L
Sbjct: 15  ITRAGHDRLKAELDDLWRVQRPEVVKALAAAAAEGDRSENAEYTYRKKQLAGIDRRVRYL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V++ +    + + FGA V L   ++G+   Y+IVG  E D   G +SI SP+
Sbjct: 75  SKRLPALRVVETAPSDPEAVFFGAWVELERIDTGELARYRIVGPDETDAALGHISIDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+ K + D + V  PGG   + ++ V +
Sbjct: 135 ARALLRKRIDDEVEVQLPGGPARFVVVDVSY 165


>gi|146294891|ref|YP_001185315.1| transcription elongation factor GreB [Shewanella putrefaciens
           CN-32]
 gi|145566581|gb|ABP77516.1| transcription elongation factor GreB [Shewanella putrefaciens
           CN-32]
          Length = 160

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +GFDK+  EL +  +E RP I K ++ A + GD SENA+Y+  K L    + 
Sbjct: 1   MKTNLITREGFDKLNAELNYLWREYRPEITKKVAWAASLGDRSENADYKENKRLLRQIDS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   I   ++++ S     ++ FGA V +       K  ++IVG  E   ++  +S
Sbjct: 61  RVRYLRKRIEAVKIVEYSPQQDGKVFFGAWVQIENDAGEIKS-FRIVGPDEIYGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I +P+ARAL+ KE+ D + V+ P GE T+ +  + +
Sbjct: 120 IDAPMARALLKKEVDDEVVVSTPLGEHTWYVNSISY 155


>gi|118581707|ref|YP_902957.1| transcription elongation factor GreB [Pelobacter propionicus DSM
           2379]
 gi|118504417|gb|ABL00900.1| transcription elongation factor GreB [Pelobacter propionicus DSM
           2379]
          Length = 157

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 84/151 (55%), Gaps = 2/151 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T++G  K++ E  +  + ERP++++ +S+A A GD SENAEY   K+     + ++ 
Sbjct: 3   NLITAEGLKKLEAEFDYLWRVERPKVVRGVSDAAAEGDRSENAEYIYGKKRLREIDRKLK 62

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L + +   +V  +         FG  VS  +++   +  YQ+VG  E DV SG +SI S
Sbjct: 63  HLGSRLKLLKVRSLPAKPESVG-FGCWVSYEDEDGAGRC-YQLVGPDEFDVSSGRISIDS 120

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+ +AL+GK + D ++++ P G+ T  I  +
Sbjct: 121 PVGQALLGKRVDDEVTISRPNGDLTVYITAI 151


>gi|126701179|ref|YP_001090076.1| transcription elongation factor GreA [Clostridium difficile 630]
 gi|254977179|ref|ZP_05273651.1| transcription elongation factor [Clostridium difficile QCD-66c26]
 gi|255094509|ref|ZP_05323987.1| transcription elongation factor [Clostridium difficile CIP 107932]
 gi|255102765|ref|ZP_05331742.1| transcription elongation factor [Clostridium difficile QCD-63q42]
 gi|255308586|ref|ZP_05352757.1| transcription elongation factor [Clostridium difficile ATCC 43255]
 gi|255316260|ref|ZP_05357843.1| transcription elongation factor [Clostridium difficile QCD-76w55]
 gi|255518921|ref|ZP_05386597.1| transcription elongation factor [Clostridium difficile QCD-97b34]
 gi|255652100|ref|ZP_05399002.1| transcription elongation factor [Clostridium difficile QCD-37x79]
 gi|255657503|ref|ZP_05402912.1| transcription elongation factor [Clostridium difficile QCD-23m63]
 gi|260685073|ref|YP_003216358.1| transcription elongation factor GreA [Clostridium difficile CD196]
 gi|260688731|ref|YP_003219865.1| transcription elongation factor GreA [Clostridium difficile R20291]
 gi|296452825|ref|ZP_06894512.1| transcription elongation factor GreA [Clostridium difficile NAP08]
 gi|296879923|ref|ZP_06903895.1| transcription elongation factor GreA [Clostridium difficile NAP07]
 gi|306521834|ref|ZP_07408181.1| transcription elongation factor GreA [Clostridium difficile
           QCD-32g58]
 gi|123066490|sp|Q181F4|GREA_CLOD6 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|115252616|emb|CAJ70459.1| Transcription elongation factor greA (Transcript cleavage factor
           GreA) [Clostridium difficile]
 gi|260211236|emb|CBA66757.1| transcription elongation factor grea [Clostridium difficile CD196]
 gi|260214748|emb|CBE07439.1| transcription elongation factor grea [Clostridium difficile R20291]
 gi|296258373|gb|EFH05281.1| transcription elongation factor GreA [Clostridium difficile NAP08]
 gi|296429037|gb|EFH14912.1| transcription elongation factor GreA [Clostridium difficile NAP07]
          Length = 159

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 91/154 (59%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            +  +T +G+DK+++EL   +  +R  + + I  A ++GDLSENAEY  AK+ Q   E R
Sbjct: 5   KEFLLTQEGYDKLEEELENLKVVKRKEVAERIKVAISFGDLSENAEYDEAKKEQAQVEER 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + +LEN++ +A +ID S +  + +  G+ V + +    ++  Y IVG  EAD   G +S 
Sbjct: 65  ILKLENMVRKAVIIDESKIDLNVVTIGSIVKVKDLEFDEEVEYTIVGSTEADPYDGKISN 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +AL+G+   +++ V  P G   +EIL++ 
Sbjct: 125 ESPVGKALLGRAAKEVVEVQVPDGVAKFEILEIR 158


>gi|332828969|gb|EGK01647.1| hypothetical protein HMPREF9455_02058 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 155

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 95/154 (61%), Gaps = 1/154 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G+ K+++E+   +  ERP I K I+EAR  GDLSENAEY AAKE Q L E 
Sbjct: 1   MAITYMTEDGYKKLKEEISALES-ERPAISKQIAEARDKGDLSENAEYDAAKEAQGLLEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++A+++N++  A +I+   +  D +     V++    +  +  Y +V + EA+++   ++
Sbjct: 60  KIAQMKNLLANARIINEEAIGIDVVQILNKVTIRNTKNNQQMTYTLVAESEANLKENKIA 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S+P+A+ L+GK++GD+  +  P G  ++EI+ +
Sbjct: 120 VSTPVAQGLMGKKVGDVAEIKVPSGMMSFEIVNI 153


>gi|327539251|gb|EGF25874.1| transcription elongation factor GreA [Rhodopirellula baltica WH47]
          Length = 153

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 55/151 (36%), Positives = 98/151 (64%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G++KI+ E+   + EE P I++ I+EAR  GDL ENAEY A +E Q +   ++ EL
Sbjct: 1   MTREGYNKIKAEINRMENEEMPMIVQKIAEAREEGDLKENAEYHAQRENQGMLMAKINEL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
            + I RA +ID+S++  D + FG TV++ +   GD++ + +VG  + D  SG + ++SP 
Sbjct: 61  RDKIARASIIDVSSLPKDEVVFGCTVTVEDVAYGDEEQFTLVGAGDEDYDSGKILVTSPF 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            + L+GK++G+   V+ P G+  ++IL++ +
Sbjct: 121 GQGLVGKKVGETAEVDVPAGKLKFKILKIEF 151


>gi|91784882|ref|YP_560088.1| transcription elongation factor GreB [Burkholderia xenovorans
           LB400]
 gi|91688836|gb|ABE32036.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400]
          Length = 189

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 73/154 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL      ERP +++ +S A + GD SEN +Y   K      + R+
Sbjct: 29  KNYITPAGYRRMRDELLHLIDVERPEVVRLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AE++D S        F           G+     IVG  E D+    VS  
Sbjct: 89  RFLTKRLDLAEIVDSSKQENVDQVFFGATVEYATEDGEVHTVTIVGIDEVDLDIAHVSWI 148

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+  ++GD +++  P G +  +IL V +
Sbjct: 149 SPIARALLKAKIGDTVTLYTPAGPQPIDILDVKY 182


>gi|325197909|gb|ADY93365.1| transcription elongation factor GreB [Neisseria meningitidis G2136]
          Length = 163

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 70/155 (45%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A   GD SEN  Y   K      + R+
Sbjct: 6   KNYITPAGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGNYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F      + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLESAVVVDPELREATDQVFFGATVGLLRGDGREQTVKIVGIDEIDTAQNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR LI    GD + +N P G +  EIL V +I
Sbjct: 126 SPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160


>gi|261400370|ref|ZP_05986495.1| transcription elongation factor GreB [Neisseria lactamica ATCC
           23970]
 gi|269209803|gb|EEZ76258.1| transcription elongation factor GreB [Neisseria lactamica ATCC
           23970]
          Length = 163

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 71/155 (45%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A   GD SEN +Y   K      + R+
Sbjct: 6   KNYITPTGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F      + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLEAAVVVDPELREATDQVFFGATVGLLRGDGREQTVKIVGIDEIDTAQNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR LI    GD + +N P G +  EIL V +I
Sbjct: 126 SPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160


>gi|241895036|ref|ZP_04782332.1| elongation factor GreA [Weissella paramesenteroides ATCC 33313]
 gi|241871754|gb|EER75505.1| elongation factor GreA [Weissella paramesenteroides ATCC 33313]
          Length = 161

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 66/159 (41%), Positives = 95/159 (59%), Gaps = 3/159 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T +G  KI++EL     E R  I   I  AR++GDLSEN+EY +AK+ Q  
Sbjct: 1   MAEEKTFPMTLEGKAKIEEELNTLITETRSEITGRIQLARSFGDLSENSEYASAKDEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  L+N++  AE+ID S ++ D +A G  V+  E    + ++Y IVG  EA+   G
Sbjct: 61  VEGRIKTLQNMLDNAEIIDSSEIADDEVAVGKKVTFKELPDEEPESYSIVGAVEANPSEG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
            +S  SPIA ALIG ++GD +SV  P G +   EIL V 
Sbjct: 121 KISNESPIAAALIGHKVGDTVSVTLPNGFDMEIEILSVE 159


>gi|56551614|ref|YP_162453.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241761261|ref|ZP_04759349.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260752794|ref|YP_003225687.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|56543188|gb|AAV89342.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241374168|gb|EER63665.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552157|gb|ACV75103.1| transcription elongation factor GreB [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 165

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 50/160 (31%), Positives = 88/160 (55%), Gaps = 4/160 (2%)

Query: 1   MVDKI--PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  K    +T +G +K+++        ERP+I++ +S A   GD SEN +Y   ++    
Sbjct: 1   MTTKNPNYITPQGLEKLKERYHHLMNTERPKIVEIVSWAAGNGDRSENGDYIYGRKKMRE 60

Query: 59  NEGRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
            +  ++ L   +  A V+D S      ++ FGATV++ +++   ++   +VG+ EAD   
Sbjct: 61  IDRELSWLSRRLKAARVVDPSAVEDRSKVWFGATVTIADEDDNQRQ-VALVGEDEADASQ 119

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           G +S  SP+ARAL G  LGD+  V  P GEK +E++++ +
Sbjct: 120 GRISWKSPLARALRGAALGDLRIVRLPAGEKEWEVIEIGY 159


>gi|227510504|ref|ZP_03940553.1| transcription elongation factor GreA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227513513|ref|ZP_03943562.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC
           11577]
 gi|227524655|ref|ZP_03954704.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC
           8290]
 gi|227083386|gb|EEI18698.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC
           11577]
 gi|227088139|gb|EEI23451.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC
           8290]
 gi|227190156|gb|EEI70223.1| transcription elongation factor GreA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 158

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 99/158 (62%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T++G DK+Q+EL   +  +RP++++ I  AR+YGDLSEN+EY++AK+ Q++
Sbjct: 1   MAEQESYPMTAEGRDKLQKELEDLKVNQRPKVVERIKIARSYGDLSENSEYESAKDEQSM 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+  +E++I  A++ID      D +  G  V+  E    + + Y IVG  EAD  SG
Sbjct: 61  LESRITTIEHMIQYAQIIDSHDSDKDEVTVGKAVTFKELPDEEPETYTIVGAAEADPMSG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA+ L+G  L + + ++ P G+   +IL+V 
Sbjct: 121 KISNDSPIAKGLLGHRLNEEVVIHIPAGDMKVKILEVK 158


>gi|149184452|ref|ZP_01862770.1| transcription elongation factor [Erythrobacter sp. SD-21]
 gi|148831772|gb|EDL50205.1| transcription elongation factor [Erythrobacter sp. SD-21]
          Length = 155

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 76/157 (48%), Positives = 114/157 (72%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK+P+ ++G++K+  +L+  +  ERPRI+ AI EARA+GDLSENAEY AAKE Q   E 
Sbjct: 1   MDKVPMLAEGYEKLTADLKVLRA-ERPRIVDAIEEARAHGDLSENAEYHAAKERQGQVEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            + +LE+ I+RA++ID +T+SGD++ FGATV+L++++      YQIVG  EAD   G +S
Sbjct: 60  MIGDLEDKISRAQIIDPTTLSGDKVIFGATVTLLDEDDKPV-KYQIVGQTEADASKGRIS 118

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            +SPIARALIGK++ + + V  P G+K Y I ++ +I
Sbjct: 119 YTSPIARALIGKQVEEEVEVTVPSGDKFYLIDKIEFI 155


>gi|254513872|ref|ZP_05125933.1| transcription elongation factor GreB [gamma proteobacterium NOR5-3]
 gi|219676115|gb|EED32480.1| transcription elongation factor GreB [gamma proteobacterium NOR5-3]
          Length = 167

 Score =  126 bits (317), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 81/151 (53%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G  +++ EL    ++ERP +  A+ +A   GD SEN +Y   K+     + R+  +
Sbjct: 15  ITAAGEARLRAELDNLWRKERPVVALAVQDAAKNGDRSENGDYIYGKKRLREIDSRVRFI 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +   +V+  +     RI FGATV + +      +   I+G  E +   G VSI SPI
Sbjct: 75  SKRLESLQVVRETPSDTSRIFFGATVEVED-QHAVIQTITILGPDEFESSRGEVSIDSPI 133

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           AR L+GK +GD + + +PGGE+  E+L + +
Sbjct: 134 ARVLLGKSVGDSVRLESPGGERELEVLDIRY 164


>gi|313889156|ref|ZP_07822812.1| transcription elongation factor GreA [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312844896|gb|EFR32301.1| transcription elongation factor GreA [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 157

 Score =  126 bits (317), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 86/156 (55%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   I  T +G +KI+ E+ + +   R  + + I  A  YGDLSEN+EY  AK  Q   E
Sbjct: 1   MEKDIFFTPEGLEKIENEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+A+LE ++  A++ID   ++ D +  G+ V + E ++ ++  Y IVG  EAD   G +
Sbjct: 61  ERIAKLEMMVRNAKIIDEKDLNTDVVNIGSNVKVRELDTMEEDEYTIVGSAEADPLEGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SP+   LIG  +GD++ V  P G   YEI  + 
Sbjct: 121 SNESPVGSKLIGNRVGDVVEVEVPDGIIKYEICGIT 156


>gi|254507342|ref|ZP_05119478.1| transcription elongation factor GreB [Vibrio parahaemolyticus 16]
 gi|219549802|gb|EED26791.1| transcription elongation factor GreB [Vibrio parahaemolyticus 16]
          Length = 160

 Score =  126 bits (317), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 89/157 (56%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +GFD++++EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTNLITREGFDRLKKELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   + + +V+D S     ++ FGA V +  ++   K  ++IVG  E      G +
Sbjct: 61  RVRYLRKRLEQVKVVDYSPQQEGKVFFGAWVEIENEDGDVKS-FRIVGPDEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+ D  SV  P G K + + ++ +
Sbjct: 120 SIDSPMARALLKKEVDDEFSVKTPDGFKDWFVNRIDY 156


>gi|88706726|ref|ZP_01104428.1| Transcription elongation factor greB [Congregibacter litoralis
           KT71]
 gi|88699047|gb|EAQ96164.1| Transcription elongation factor greB [Congregibacter litoralis
           KT71]
          Length = 185

 Score =  126 bits (317), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 83/152 (54%), Gaps = 1/152 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G  +++ EL    ++ERP +  A+ +A   GD SEN +Y   K+     + R+  +
Sbjct: 15  ITAAGEARLRAELDRLWRQERPVVALAVQDAAKNGDRSENGDYIYGKKRLREIDSRVRFI 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +   +V+        RI FGATV + +      +  +I+G  E +   G VSI +PI
Sbjct: 75  SKRLEVLQVVREPPTDRTRIFFGATVEVED-QHAVSRTIRILGPDEFESSRGEVSIDAPI 133

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ARAL+GK +GD +++ +PGG +  E+L V ++
Sbjct: 134 ARALLGKSVGDCVNLESPGGLRELEVLAVSYL 165


>gi|56478200|ref|YP_159789.1| transcription elongation factor GreB [Aromatoleum aromaticum EbN1]
 gi|56314243|emb|CAI08888.1| transcription elongation factor [Aromatoleum aromaticum EbN1]
          Length = 186

 Score =  126 bits (317), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 91/158 (57%), Gaps = 3/158 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G++ +++EL    + ERP++++ ++ A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYMTRRGYESLRRELDHLVRIERPKMVETVAWAASNGDRSENGDYIYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDI-STMSGDRIAFGAT--VSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             L   I  AEV+D       D++ FGAT  +  V+ +   ++ +QIVG  EAD  +G +
Sbjct: 89  RFLIKRIESAEVVDPADQREIDQVFFGATVSIVDVDSDDDSEQIWQIVGVDEADAGAGRI 148

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S  SP+ARAL+    GD++   +P G +  E++++ ++
Sbjct: 149 SWISPLARALLKAREGDVVRFMSPAGPREIEVVEIRYV 186


>gi|154505278|ref|ZP_02042016.1| hypothetical protein RUMGNA_02792 [Ruminococcus gnavus ATCC 29149]
 gi|153794476|gb|EDN76896.1| hypothetical protein RUMGNA_02792 [Ruminococcus gnavus ATCC 29149]
          Length = 161

 Score =  126 bits (317), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 2/157 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T  G   ++ EL   +  +R  +   I EAR  GDLSENAEY AAK+ Q  
Sbjct: 1   MAEAKKRLLTYAGLKALEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRD 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ELE I+  AEV+    +  D+I  G  V + +    ++  + IVG  E +   G
Sbjct: 61  IEARIEELEGILKNAEVVVEDEVDLDKINVGCKVKVFDITFDEEMEFNIVGSTEVNSLEG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+ +AL+GK++GD + V    G   Y++L +
Sbjct: 121 KISNESPVGQALMGKKVGDTVDVETQAGVIQYKVLDI 157


>gi|296533019|ref|ZP_06895667.1| transcription elongation factor GreB [Roseomonas cervicalis ATCC
           49957]
 gi|296266648|gb|EFH12625.1| transcription elongation factor GreB [Roseomonas cervicalis ATCC
           49957]
          Length = 174

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 78/153 (50%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T  G   +Q+ELR    EERP++++ +S A + GD SENA+YQ  K      + R+ 
Sbjct: 20  FYMTPSGQAALQEELRALWSEERPKVVEIVSWAASLGDRSENADYQYGKRRLREIDRRVR 79

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   + R +V+D +  +     F        +    + +  IVG  EAD   G +S  S
Sbjct: 80  FLRKRLERVQVVDPAAQTRRDQVFFGASVTYAREDDSEVSVTIVGIDEADADRGRISWVS 139

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+ARAL+   +GD++ +  P G +  E+L + +
Sbjct: 140 PVARALLKARIGDLVRIRTPAGPEEVEVLAITY 172


>gi|313205435|ref|YP_004044092.1| transcription elongation factor grea [Paludibacter propionicigenes
           WB4]
 gi|312444751|gb|ADQ81107.1| transcription elongation factor GreA [Paludibacter propionicigenes
           WB4]
          Length = 151

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 54/149 (36%), Positives = 95/149 (63%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T++G+ K+ +EL   +  +RP I K I EAR  GDLSENAEY AAKE Q + E R++ L
Sbjct: 1   MTAEGYRKLVEELNELESVQRPAISKQIGEARDKGDLSENAEYDAAKEAQGMLEMRISNL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +++I  A +ID S ++ + +     V +    +    +Y IV + EA+ + G +S+++PI
Sbjct: 61  KDMIASARMIDESKINTNEVQILTRVKIKNTKTNQLMSYMIVSESEANFKEGKLSVTTPI 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
           A+ L+GK++G+  +V+ P G   +E++++
Sbjct: 121 AKGLLGKKVGERATVSVPSGMLEFEVMEI 149


>gi|326792442|ref|YP_004310263.1| transcription elongation factor GreA [Clostridium lentocellum DSM
           5427]
 gi|326543206|gb|ADZ85065.1| transcription elongation factor GreA [Clostridium lentocellum DSM
           5427]
          Length = 158

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  K + +T +G  K++ EL   +   R  + + + EARA GDLSENAEY AAKE Q   
Sbjct: 1   MSSKSVLLTYEGIKKLEAELENLKTTRRNDVAEKLKEARAQGDLSENAEYDAAKEEQAEI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ ELE ++  A VI+    + + +  G TV L +    ++ +Y IVG  EAD  +G 
Sbjct: 61  EVRIVELETMLKNAVVIEAEEGAVEIVKPGYTVRLYDHTFEEEVDYLIVGSTEADPVNGR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  AL+ + +GDI+ V    G   YEIL + 
Sbjct: 121 ISNESPVGAALMNRRVGDIVEVETSEGVDKYEILGIT 157


>gi|302388756|ref|YP_003824577.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM
           16646]
 gi|302199384|gb|ADL06954.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM
           16646]
          Length = 158

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 90/154 (58%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            ++ +T +G  K+++EL + +  +R  +   I +A ++GDLSEN+EY  AK  Q   EG+
Sbjct: 4   KEVVLTQEGLRKLEKELEYLKSVKRKEVADRIKQAISFGDLSENSEYDEAKNEQAFVEGK 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +A LE  +  A+VID + +S + +  G+ V + + ++ +   Y IV   EA+     +S 
Sbjct: 64  IAMLEEKLRNAKVIDDADISTETVTLGSKVLIRDLDTEEAIEYTIVSSAEANPIDFKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +AL+G + GD+I ++ P G+  Y + ++ 
Sbjct: 124 ESPVGKALMGAKKGDVIEISVPAGQVRYRVEEIK 157


>gi|323141548|ref|ZP_08076433.1| transcription elongation factor GreA [Phascolarctobacterium sp. YIT
           12067]
 gi|322413960|gb|EFY04794.1| transcription elongation factor GreA [Phascolarctobacterium sp. YIT
           12067]
          Length = 158

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 2/158 (1%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  K   +T++G  K+++EL  R+ E R  I++ + EARA GDLSEN+EY  AKE Q  N
Sbjct: 1   MASKETILTAEGLRKLKEELAQRKGEIREEIVERLKEARAQGDLSENSEYDQAKEDQGKN 60

Query: 60  EGRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           EGR+ ELE +I  A +ID S + +   ++ G+TV L +  +GD++ Y IVG  EAD    
Sbjct: 61  EGRILELEQMIKTATIIDDSASKAAGIVSLGSTVLLKDVETGDEETYTIVGTTEADPFEN 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+  A++G ++ D++    P GE +YEI+++ 
Sbjct: 121 RISNESPVGAAILGCKVHDVVVTKTPVGELSYEIVEIK 158


>gi|166712646|ref|ZP_02243853.1| transcription elongation factor GreB [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 200

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 83/151 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL    +  RP +++A++ A A GD SENAEY   K+     + R+  L
Sbjct: 45  ITPEGHARLKAELDDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 104

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+D +    + + FGA V L + +SG+   Y+IVG  E D   G +SI SP+
Sbjct: 105 SKRLEALRVVDTAPTEPNAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 164

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+ K + D    + P G+ T+ ++ V +
Sbjct: 165 ARALLKKRVDDEFDAHLPAGKHTFVVVSVHY 195


>gi|205354873|ref|YP_002228674.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205274654|emb|CAR39708.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326630019|gb|EGE36362.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 157

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++ ++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ F A V +   + GD   ++IVG  E   +   +S
Sbjct: 61  RVRYLTKCMENLKIVDYSPQQEGKVFFSAWVEIENDD-GDTLKFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           I SP+ARAL+ KE+GD+  VN P GE  + +  + ++
Sbjct: 120 IDSPMARALLKKEVGDLAVVNTPVGEANWYVNAIEYV 156


>gi|288928758|ref|ZP_06422604.1| transcription elongation factor GreA [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288329742|gb|EFC68327.1| transcription elongation factor GreA [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 154

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 90/151 (59%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G++K+  ELR  +  ERP+   AI+EAR  GDLSEN+EY AAKE Q   E ++ +
Sbjct: 3   YMSQEGYEKLVAELRRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I  A+++D S +S D +   + V +    +  K  Y IV + EA+++ G ++I++P
Sbjct: 63  LKVAINEAKIVDTSRLSSDAVQILSKVQMTNLTTKAKMTYTIVSESEANLKEGKIAITTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           IA+ L+ K+ GD + +  P G     I ++ 
Sbjct: 123 IAQGLLNKKEGDEVEITIPRGTIKLRIDKIT 153


>gi|284048763|ref|YP_003399102.1| GreA/GreB family elongation factor [Acidaminococcus fermentans DSM
           20731]
 gi|283952984|gb|ADB47787.1| GreA/GreB family elongation factor [Acidaminococcus fermentans DSM
           20731]
          Length = 172

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 96/157 (61%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M ++  +T +G  K++ EL + + E+R ++ + +  A +YGD+SEN+EY  AK  Q   E
Sbjct: 1   MAEQTILTEEGLKKLEDELDYLRSEKRQQVAERLKVAISYGDISENSEYDDAKNEQAFVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-- 118
           GR+  LEN+I  A++I  + ++ + ++ G  V + +  + D++ Y +VG  EAD  +   
Sbjct: 61  GRILTLENMIRNAQIIKDTDITKNVVSLGCKVKIEDMETHDQEEYTVVGTTEADPMAEPP 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+ +A++G+++G ++ V  P GE  Y+I+ V
Sbjct: 121 RISNESPVGKAILGQKVGAVVKVTTPIGELDYKIVAV 157


>gi|261250558|ref|ZP_05943133.1| transcription elongation factor GreB [Vibrio orientalis CIP 102891]
 gi|260939127|gb|EEX95114.1| transcription elongation factor GreB [Vibrio orientalis CIP 102891]
          Length = 158

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+D++++EL +  +E+RP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTNLITREGYDRLKKELDFLWREDRPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   + + +V+D S     ++ FGA V +  ++   K  ++IVG  E      G +
Sbjct: 61  RVRYLRKRLEQVKVVDYSPQQEGKVFFGAWVEIENEDGDTKA-FRIVGPDEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+ D  SV  P G K + +  + +
Sbjct: 120 SIDSPMARALLKKEVDDEFSVKTPEGFKEWFVNSIRY 156


>gi|258647783|ref|ZP_05735252.1| transcription elongation factor GreA [Prevotella tannerae ATCC
           51259]
 gi|260852234|gb|EEX72103.1| transcription elongation factor GreA [Prevotella tannerae ATCC
           51259]
          Length = 177

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 91/150 (60%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G+DK+   L   +  ERP    AI+EAR  GDLSEN+EY AAKE Q + E ++++
Sbjct: 26  YMTQEGYDKMVARLHHMEAVERPAASAAIAEARDKGDLSENSEYDAAKEAQGMLEMKISQ 85

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I  A++ID S ++ + +   +TV++    +G    Y IV + EA+++ G +S  +P
Sbjct: 86  LKEAIATAKIIDTSKLNNETVQILSTVAMKNLKTGMVMTYTIVSESEANIREGKISSQTP 145

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+G ++GD++ V  P G    EI  +
Sbjct: 146 IAQGLLGHKVGDVVEVKIPQGLIQLEIQSI 175


>gi|86159099|ref|YP_465884.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775610|gb|ABC82447.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 163

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +GF ++  E      E+RPRI+  +  A A GD SENAEY   K+     + R+  
Sbjct: 7   YITPEGFRRLAAEHTRIWTEQRPRIVAEVEAAAALGDRSENAEYIYGKKKLRELDRRLRF 66

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +    V++       R  FGA V++ E+  G ++ Y++VG  E DV +GL+S+ +P
Sbjct: 67  LSEKMDSLSVVEPRAHPDGRAFFGAWVTV-EQEDGQERRYRLVGPDEFDVSAGLISVDAP 125

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + RAL+GK  GD++ V+ P G   + +++V W
Sbjct: 126 LGRALLGKREGDVVVVHRPAGMVEFTVVEVSW 157


>gi|323143848|ref|ZP_08078514.1| transcription elongation factor GreB [Succinatimonas hippei YIT
           12066]
 gi|322416366|gb|EFY07034.1| transcription elongation factor GreB [Succinatimonas hippei YIT
           12066]
          Length = 207

 Score =  126 bits (316), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 86/157 (54%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++ K  +T +G+D + QEL +   E+RP + + +S A + GD SENA+YQ  K L    +
Sbjct: 3   IMGKPYITREGYDLLHQELDYLWLEKRPDVTQKVSWAASLGDRSENADYQYNKRLLAQID 62

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +V++ +     ++ FGA V +   +       +IVG  E   ++  +
Sbjct: 63  RRIRYLRGCMNNLQVVEYNHQQDGKVFFGAYVEIEADDDESLMQVRIVGGDEIFGRTNYI 122

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+ SP+A+AL+GK  GD  SV+ P G + + I ++ +
Sbjct: 123 SVDSPMAKALLGKAEGDDASVHTPKGARIWYINRIAY 159


>gi|262273560|ref|ZP_06051374.1| transcription elongation factor GreB [Grimontia hollisae CIP
           101886]
 gi|262222538|gb|EEY73849.1| transcription elongation factor GreB [Grimontia hollisae CIP
           101886]
          Length = 161

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 84/157 (53%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     VT +G++K++QEL +   E RP I K +S A + GD SENA+Y   K L    +
Sbjct: 1   MKKTDLVTREGYNKLKQELDYLWNERRPEITKIVSWAASLGDRSENADYTYNKRLLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    VID S     ++ FGA V +   + GD  +++IVG  E   +   +
Sbjct: 61  RRVRYLRKRLEVLRVIDYSPQQDGKVFFGAWVDVENDD-GDTLSFRIVGPDEIYGRKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALI KE+ D   V  P G K + + ++ +
Sbjct: 120 SIDSPMARALIKKEVDDEAVVATPEGPKVWYVNRIRY 156


>gi|294788550|ref|ZP_06753792.1| transcription elongation factor GreB [Simonsiella muelleri ATCC
           29453]
 gi|294483427|gb|EFG31112.1| transcription elongation factor GreB [Simonsiella muelleri ATCC
           29453]
          Length = 162

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 82/159 (51%), Gaps = 1/159 (0%)

Query: 1   MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M D K  +T +G   +QQEL     +ERP I++ ++ A + GD SEN +Y   K      
Sbjct: 1   MSDVKYYMTPQGHQTLQQELYQLVHKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           + R+  L   +  A VID  T       F +    +E+++G ++  +IVG+ E D     
Sbjct: 61  DRRIRFLTKRLENALVIDPETREFTDQIFFSATVTIERSNGVEQTVKIVGEDEIDATKNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S  SP+ARALI    GD + +N P G +  +IL V +I
Sbjct: 121 ISWKSPLARALIKAREGDRVWLNVPNGREAIDILVVEYI 159


>gi|254804573|ref|YP_003082794.1| Transcription elongation factor [Neisseria meningitidis alpha14]
 gi|254668115|emb|CBA04682.1| Transcription elongation factor [Neisseria meningitidis alpha14]
          Length = 163

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 72/155 (46%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A   GD SEN +Y   K      + R+
Sbjct: 6   KNYITPAGWQALKNELYRLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A VID          F +    + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLEAAVVIDPELREATDQVFFSATVGLLRGDGREQTVKIVGIDEIDTAQNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR LI    GD + +N P G +  EIL V +I
Sbjct: 126 SPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160


>gi|161501839|ref|NP_759835.2| transcription elongation factor GreB [Vibrio vulnificus CMCP6]
 gi|31340138|sp|Q8DDU7|GREB_VIBVU RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|319999141|gb|AAO09362.2| transcription elongation factor GreB [Vibrio vulnificus CMCP6]
          Length = 160

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++QEL +  +E RP I + +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKMITREGYNKLKQELDYLWKEHRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +   +++D +     ++ FGA V +  +       ++IVG +E      G +
Sbjct: 61  RVRFLSKFLPEVKIVDYAPQQEGKVFFGAWVEIENEAGE-VMKFRIVGPEEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+ D + V  P G K + I  + +
Sbjct: 120 SIDSPMARALLKKEVDDEVQVPTPSGIKEWFINSIEY 156


>gi|320539828|ref|ZP_08039487.1| transcription elongation factor [Serratia symbiotica str. Tucson]
 gi|320030014|gb|EFW12034.1| transcription elongation factor [Serratia symbiotica str. Tucson]
          Length = 157

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+ K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTQLITRQGYSKLKQELDYLWREERPEVTKKVACAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + + +VI+ +     ++ FGA V +   N   K  ++IVG  E   +   +S
Sbjct: 61  RVRYLAQCLEQLKVINYAPQQEGKVFFGAWVEVENDNGDVK-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I +P+ARAL+ KE+GD   VN P GE  + I ++ +
Sbjct: 120 IDAPMARALLKKEVGDTAIVNTPQGEAWWHINKIEY 155


>gi|114049374|ref|YP_739924.1| transcription elongation factor GreB [Shewanella sp. MR-7]
 gi|113890816|gb|ABI44867.1| transcription elongation factor GreB [Shewanella sp. MR-7]
          Length = 161

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 2/158 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  K   +T +GF+K+  EL    +E RP I K ++ A + GD SENA+Y+  K L    
Sbjct: 1   MTLKTNLITREGFEKLNAELNHLWREYRPEITKKVAWAASLGDRSENADYKENKRLLRQI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           + R+  L   I   +V++ S     ++ FGA V +   +   K  ++IVG  E   ++  
Sbjct: 61  DSRVRYLRKRIEAVKVVEYSPQQDGKVFFGAWVQIENDDGDIKS-FRIVGPDEIYGRNDY 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +SI +P+ARAL+ K + D + V  P GE+ + +  + +
Sbjct: 120 ISIDAPMARALLKKAVDDEVIVQTPVGEQMWYVNSISY 157


>gi|225075604|ref|ZP_03718803.1| hypothetical protein NEIFLAOT_00620 [Neisseria flavescens
           NRL30031/H210]
 gi|224953026|gb|EEG34235.1| hypothetical protein NEIFLAOT_00620 [Neisseria flavescens
           NRL30031/H210]
          Length = 163

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 74/155 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A + GD SEN +Y   K      + R+
Sbjct: 6   KNYITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F +    + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLEAAVVVDPEAREATDQVFFSATVGLLRGDGREQTVKIVGVDEIDTAKNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR+LI    GD + ++ P G +  EIL V +I
Sbjct: 126 SPLARSLIKAREGDEVVLDTPEGREVIEILSVEYI 160


>gi|251787893|ref|YP_003002614.1| transcription elongation factor GreB [Dickeya zeae Ech1591]
 gi|247536514|gb|ACT05135.1| transcription elongation factor GreB [Dickeya zeae Ech1591]
          Length = 160

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++ + QEL +  +E RP I + ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTDLITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +    V+D S     ++ FGA V +  ++   K  ++IVG  E   +   +S
Sbjct: 61  RVRYLRKRLQVVRVVDYSPQQDGKVFFGAWVEVENEDGDIKC-FRIVGPDEIYGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I +P+ARAL+ K + +   V+ P G K + + ++ +
Sbjct: 120 IDAPMARALLKKAVDEEAVVSTPAGPKVWYVNKIDY 155


>gi|225569857|ref|ZP_03778882.1| hypothetical protein CLOHYLEM_05951 [Clostridium hylemonae DSM
           15053]
 gi|225161327|gb|EEG73946.1| hypothetical protein CLOHYLEM_05951 [Clostridium hylemonae DSM
           15053]
          Length = 160

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 87/154 (56%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T  G   ++ EL   +  +R  +   I EAR  GDLSENAEY AAK+ Q   E 
Sbjct: 3   AKKKLLTYAGLKALEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEA 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE I+  AEV+    +  D+I  G  V + +K   ++  ++IVG  EA+   G +S
Sbjct: 63  RIEELEGILKNAEVVVEDEVDFDKINVGCAVKVFDKTFDEEMEFKIVGSTEANSLEGKIS 122

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+ +AL+GK++GD + V    GE  Y++L++
Sbjct: 123 NESPVGQALMGKKVGDTVKVETQAGEMAYKVLEI 156


>gi|241759774|ref|ZP_04757874.1| transcription elongation factor GreB [Neisseria flavescens SK114]
 gi|241319782|gb|EER56178.1| transcription elongation factor GreB [Neisseria flavescens SK114]
          Length = 163

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 74/155 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A + GD SEN +Y   K      + R+
Sbjct: 6   KNYITPTGWQALKDELYHLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F +    + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLEAAVVVDPEAREATDQIFFSATVGLLRGDGREQTVKIVGVDEIDTAKNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR+LI    GD + ++ P G +  EIL V +I
Sbjct: 126 SPLARSLIKAREGDEVVLDTPEGREVIEILSVEYI 160


>gi|148976494|ref|ZP_01813190.1| transcription elongation factor GreB [Vibrionales bacterium SWAT-3]
 gi|145964070|gb|EDK29327.1| transcription elongation factor GreB [Vibrionales bacterium SWAT-3]
          Length = 160

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+++++ E      E+RP I K ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITREGYNRLKAEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +    ++D S     ++ FGA V +   +   K  ++IVG +E      G +
Sbjct: 61  RVRFLRKFLPDVTIVDYSPQQEGKVFFGAWVEIENDDGEIK-KFRIVGPEEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+ D  +V  P G+K + I  + +
Sbjct: 120 SIDSPMARALLKKEVDDEFTVKTPEGDKEWFINSIRY 156


>gi|332972986|gb|EGK10926.1| transcription elongation factor GreB [Kingella kingae ATCC 23330]
          Length = 168

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 2/160 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D  K  +T  G  ++Q EL     +ERP I + ++ A + GD SEN +Y   K     
Sbjct: 6   MTDTPKNYITPTGHRRLQDELYQLVHKERPEIAQIVNWAASNGDRSENGDYLYGKRRMCE 65

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            + R+  L   +  A V++  T       F A    +E+ +G ++  +IVG+ E D   G
Sbjct: 66  IDRRIRFLTKRLEHALVVNPETREPTDQIFFAATVTLERGNGAEQVVKIVGEDEIDSAQG 125

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            +S  SP+AR LI    GD + +N P G +  EIL V +I
Sbjct: 126 KISWKSPLARVLIKAREGDTVWLNTPDGREQIEILIVEYI 165


>gi|89901919|ref|YP_524390.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118]
 gi|89346656|gb|ABD70859.1| GreA/GreB family elongation factor [Rhodoferax ferrireducens T118]
          Length = 187

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 76/154 (49%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+ +++ EL      +RP++++A+  A + GD SEN +Y   K+     + R+
Sbjct: 29  KNYITPQGYARLRGELLDLIDNQRPQVVEAVYWAASNGDRSENGDYIYGKKRLREIDRRI 88

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A+V D +   G    F        + +G  ++  I+G  EAD   G VS  
Sbjct: 89  RFLTQRLEIAQVTDPALHHGSEQIFFGAHVTYVEAAGTARSVTILGIDEADSALGQVSWV 148

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIAR L+   +GD + +  P G    E++ V +
Sbjct: 149 SPIARTLLQARVGDELQLLTPVGRVEIEVIGVDY 182


>gi|332185240|ref|ZP_08386989.1| transcription elongation factor GreB [Sphingomonas sp. S17]
 gi|332014964|gb|EGI57020.1| transcription elongation factor GreB [Sphingomonas sp. S17]
          Length = 160

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 85/158 (53%), Gaps = 2/158 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  ++QE       ERP+++  I+ A   GD SEN +Y   ++     +
Sbjct: 1   MDRPNYITPAGYAALRQEYEALFAVERPKLVDTIAWAAGNGDRSENGDYIYGRKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
            R+  L   +  A+VID +      ++ FGATV++ +++  +++   +VGD EAD   G 
Sbjct: 61  RRLGWLSKRMKAAKVIDPARQEDRSKVWFGATVTIADED-DNERVLTLVGDDEADAGQGR 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           V  ++P+ RAL G  +GD+  V  P GE+ YE++ + +
Sbjct: 120 VGWNAPLVRALRGAAIGDLRRVVLPAGEREYEVIAITY 157


>gi|156740036|ref|YP_001430165.1| transcription elongation factor GreA [Roseiflexus castenholzii DSM
           13941]
 gi|229485906|sp|A7NFC5|GREA_ROSCS RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|156231364|gb|ABU56147.1| transcription elongation factor GreA [Roseiflexus castenholzii DSM
           13941]
          Length = 157

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 82/157 (52%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK   +T  G  +++ EL     + R  I + I+ A+  GD+SE+ EY+ AK  Q   
Sbjct: 1   MSDKPAYLTRDGRARLEAELEELVTKGRKEIAERINAAKELGDISESGEYEDAKNQQAHL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+ E+++I+ RA++ID    S   +  G+ V++      +++ + IVG  EA    G 
Sbjct: 61  EGRIREIKSILARAQIIDEENGSNHEVRIGSRVTVRIDGEHEEETWTIVGSTEAKPSEGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPI  AL+GK     ++V  P G     IL + 
Sbjct: 121 ISNESPIGAALLGKRPSQQVTVETPSGTMKLTILNIQ 157


>gi|94497870|ref|ZP_01304436.1| transcription elongation factor [Sphingomonas sp. SKA58]
 gi|94422759|gb|EAT07794.1| transcription elongation factor [Sphingomonas sp. SKA58]
          Length = 161

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 84/154 (54%), Gaps = 2/154 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T +GF K++ +       ERP I++ +S A   GD SEN +Y   ++     +G++ 
Sbjct: 7   NYITPEGFAKLRADYDHLLGVERPSIVEVVSWAAGNGDRSENGDYLYGRKRMREIDGQLK 66

Query: 65  ELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            L   +  A+V+D        R+ FGATV++ +++   +    +VG+ E DV +G +   
Sbjct: 67  RLSKKMKDAKVVDPWQQPDKSRVYFGATVTIADEDDNHR-TVTLVGNDETDVDAGRIGWG 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL G  +GD+  V  P GE+ YE++ + +
Sbjct: 126 SPIARALRGAAVGDLRRVMLPAGEREYEVMAIRY 159


>gi|289663189|ref|ZP_06484770.1| transcription elongation factor GreB [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289669412|ref|ZP_06490487.1| transcription elongation factor GreB [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 167

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 82/151 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL    +  RP +++A++ A A GD SENAEY   K+     + R+  L
Sbjct: 15  ITPEGHARLKAELEDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+D +    + + FGA V L + +SG+   Y+IVG  E D   G +SI SP+
Sbjct: 75  SKRLEALRVVDTAPTDPNAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+ K + D      P G+ T+ ++ V +
Sbjct: 135 ARALLKKRVDDEFDAQLPAGKHTFVVMSVHY 165


>gi|57234441|ref|YP_181502.1| transcription elongation factor GreA [Dehalococcoides ethenogenes
           195]
 gi|123759708|sp|Q3Z8E7|GREA_DEHE1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|57224889|gb|AAW39946.1| transcription elongation factor GreA [Dehalococcoides ethenogenes
           195]
          Length = 156

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV+KIP+T+ G+ K++ EL   +  +R  +I+ +  A    D+ ENA Y AAKE +   E
Sbjct: 1   MVEKIPMTASGYKKLEDELSTLK-VKRIDVIEEMRLAAMDKDMRENAPYHAAKEQRGQIE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ E+E+ +  A+V + +  +  ++  G+TV L +  +G+   Y +V  +E +   G +
Sbjct: 60  GRIKEIEHELKYADVSEYTDTNTSKVNMGSTVKLRDPKNGECCTYTLVSPKEIEPLKGKI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S SSPI +A+  +  G+ I +  P G   Y I  + +
Sbjct: 120 SASSPIGKAVFNRNKGEQIEIEVPSGTLQYIIEDISF 156


>gi|242237779|ref|YP_002985960.1| transcription elongation factor GreB [Dickeya dadantii Ech703]
 gi|242129836|gb|ACS84138.1| transcription elongation factor GreB [Dickeya dadantii Ech703]
          Length = 160

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++ + QEL +  +E RP I + ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTDLITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +    V+D S     ++ FGA V +  +    K  ++IVG  E   +   +S
Sbjct: 61  RVRYLRKRLQIVRVVDYSPQQEGKVFFGAWVEVENEAGDIK-RFRIVGPDEIYGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I +P+ARAL+ K + + + VN P G + + + ++ +
Sbjct: 120 IDAPMARALLKKTVDEDVVVNTPAGPRVWYVNKIDY 155


>gi|309378808|emb|CBX22634.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 163

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 71/155 (45%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A   GD SEN +Y   K      + R+
Sbjct: 6   KNYITPTGWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F      + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLEAAVVVDPELREATDQVFFGATVGLLRGDGREQTVKIVGIDEIDTAQNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR LI    GD + +N P G +  EIL V ++
Sbjct: 126 SPLARCLIKAREGDEVVLNTPEGREEIEILSVEYV 160


>gi|313906158|ref|ZP_07839506.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6]
 gi|313468997|gb|EFR64351.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6]
          Length = 161

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 93/158 (58%), Gaps = 2/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T  G   ++ EL   Q  +R  I + + EARA GDLSENAEY AAK+ Q  
Sbjct: 1   MAEPKKTIMTYAGLKALESELEDLQVNKRKEIAEKLKEARAQGDLSENAEYDAAKDEQAQ 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ E+ENI+  A+V+       + +  G  + +++K   ++  +QIVG  EA+   G
Sbjct: 61  IEARIEEIENILKNADVVVEEEADSNTVNVGCKIKVLDKTYDEELEFQIVGSTEANSLKG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+ RAL+G E+GD++++  P G++ YEIL + 
Sbjct: 121 KISNESPVGRALLGHEIGDVVTIETPAGDEQYEILVIE 158


>gi|78045034|ref|YP_361163.1| transcription elongation factor GreA [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997149|gb|ABB16048.1| transcription elongation factor GreA [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 157

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T +G  K++QEL   +  +R  + + I +A  +GD+SEN+EY+ AK  Q   
Sbjct: 1   MKEKEVILTREGLKKLEQELEELKSVKRREVAERIKQAIEFGDISENSEYEDAKNAQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A++I+      D +  G+ V L +   G  + Y +VG  EAD  +  
Sbjct: 61  EGRIITLEKMLRNAKIIENDQQK-DVVTLGSKVVLKDLEYGVVEEYYLVGSAEADPSANK 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SP+  A++GK+ G ++ V  P G   YEI+ +
Sbjct: 120 ISNESPVGSAILGKKKGTVVEVKVPAGTLKYEIVDI 155


>gi|298369204|ref|ZP_06980522.1| transcription elongation factor GreB [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298283207|gb|EFI24694.1| transcription elongation factor GreB [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 163

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 71/155 (45%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A   GD SEN +Y   K      + R+
Sbjct: 6   KNYITPVGWQALKDELYRLVHKERPEIVQVVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F      + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLEAAVVVDPEQREPTEQVFFGATVCLLRGDGSEQTVRIVGADEIDTAQNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR LI    GD + +N P G +  EIL V +I
Sbjct: 126 SPLARCLIKAREGDEVVLNGPEGREEIEILSVEYI 160


>gi|145628952|ref|ZP_01784752.1| transcription elongation factor GreB [Haemophilus influenzae
           22.1-21]
 gi|144979422|gb|EDJ89108.1| transcription elongation factor GreB [Haemophilus influenzae
           22.1-21]
          Length = 156

 Score =  126 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 83/154 (53%), Gaps = 1/154 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G+  + QEL++  +EERP++ +A+S+A A GD SENAEY   K      +
Sbjct: 1   MAKSNYITRQGWLALDQELKFLWKEERPKVTQAVSDAAALGDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D +     ++ FGA V L  +    K+ Y+IVG  E       +
Sbjct: 61  RRVRFLTKRLEVLQIVDYNPKQEGKVFFGAWVELENEEGETKQ-YRIVGCDEFAPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           SI SP+ARALIGK L D + V  P G  T  I +
Sbjct: 120 SIDSPVARALIGKTLDDEVRVETPSGFITLYINK 153


>gi|145589258|ref|YP_001155855.1| transcription elongation factor GreB [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047664|gb|ABP34291.1| transcription elongation factor GreB [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 166

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 84/166 (50%), Gaps = 8/166 (4%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +K  +T  G ++I+ EL      +RP ++K +  A + GD SEN +Y   K+     +
Sbjct: 1   MEEKNYITPVGHERIKTELLQLLNLDRPEVVKVVHWAASNGDRSENGDYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDIS-----TMSGDRIAFGATVSLVE---KNSGDKKNYQIVGDQE 112
            R+  L   +  A V+D S         ++I FGATV+       ++G +    IVG  E
Sbjct: 61  RRIRFLNQRLEFAVVVDNSARKSGDQDAEQIFFGATVTYSPLKGADAGKEITITIVGVDE 120

Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            D++   VS  SPIA+ALI   LGD + +  P G    EIL+V ++
Sbjct: 121 VDLEKNHVSWVSPIAKALIKARLGDCVKIQTPTGPTEIEILEVQYL 166


>gi|325916905|ref|ZP_08179150.1| transcription elongation factor GreB [Xanthomonas vesicatoria ATCC
           35937]
 gi|325536851|gb|EGD08602.1| transcription elongation factor GreB [Xanthomonas vesicatoria ATCC
           35937]
          Length = 167

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 82/151 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL    +  RP +++A++ A A GD SENAEY   K+     + R+  L
Sbjct: 15  ITPEGHSRLKVELEDLWRVRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+D +    + + FGA V L + +SG+   Y+IVG  E D   G +SI SP+
Sbjct: 75  SKRLEALRVVDTAPTDPNAVFFGAQVELEDADSGELLRYRIVGPDETDAVLGWISIDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+ K + D      P G+ T+ ++ V +
Sbjct: 135 ARALLKKRVDDEFEAQLPAGKHTFVVVSVDY 165


>gi|291613395|ref|YP_003523552.1| transcription elongation factor GreB [Sideroxydans lithotrophicus
           ES-1]
 gi|291583507|gb|ADE11165.1| transcription elongation factor GreB [Sideroxydans lithotrophicus
           ES-1]
          Length = 186

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 83/155 (53%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G+ ++++E       ERP +++ +S A + GD SEN +Y   K+     + R+
Sbjct: 28  KNYITPEGYRRLKEEYMQLLDVERPALVQTVSWAASNGDRSENGDYIYGKKRLREIDRRL 87

Query: 64  AELENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  ++VID +     +++ FGATV++   + G ++ Y IVG  EA+   G +S 
Sbjct: 88  RFLAKRLENSQVIDPAQRQGCEQVFFGATVTVC-HSDGTERTYSIVGIDEANASKGHISW 146

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+AR L+     D + +  P G +   +++V +
Sbjct: 147 VSPLARTLLKARADDAVILQLPEGVEELVVIEVSY 181


>gi|84386352|ref|ZP_00989380.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
 gi|84378776|gb|EAP95631.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
          Length = 165

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 80/157 (50%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    ++ +G++K++ E      E+RP I K ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLISREGYNKLKAEHDHLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +    ++D S     ++ FGA V +  +    K  ++IVG +E      G +
Sbjct: 61  RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIENQAGDVK-KFRIVGPEEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+ D   V  P G K + I  + +
Sbjct: 120 SIDSPMARALLKKEVDDEFEVKTPDGVKEWYINSITY 156


>gi|260910637|ref|ZP_05917297.1| transcription elongation factor GreA [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260635237|gb|EEX53267.1| transcription elongation factor GreA [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 154

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 91/151 (60%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G++K+  ELR  +  ERP+   AI++AR  GDLSEN+EY AAKE Q   E ++ +
Sbjct: 3   YMSQEGYEKLVAELRRLESIERPKASAAIADARDKGDLSENSEYDAAKEAQAHLEDKINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I  A+++D S +S D +   + V +    +  K +Y IV + EA+++ G ++I++P
Sbjct: 63  LKVAINEAKIVDTSRLSTDAVQILSKVDMTNLTTKAKMSYTIVSESEANLKEGKIAITTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           IA+ L+ K+ GD + +  P G     I ++ 
Sbjct: 123 IAQGLLNKKEGDEVEITIPRGTIKLRIDKIT 153


>gi|120596941|ref|YP_961515.1| transcription elongation factor GreB [Shewanella sp. W3-18-1]
 gi|120557034|gb|ABM22961.1| transcription elongation factor GreB [Shewanella sp. W3-18-1]
 gi|319424532|gb|ADV52606.1| GreA/GreB family elongation factor [Shewanella putrefaciens 200]
          Length = 167

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+  + +EL++  +E RP+I   + EA A GD SENA+Y   K L    + 
Sbjct: 1   MKAHLITRQGWLALDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     +I FGA   L       +  Y+IVG  E D + G ++
Sbjct: 61  RVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELENDAGE-RVRYRIVGKDELDTKLGYIT 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALIGK++ D + V  P G K + I ++ +
Sbjct: 120 IDSPMARALIGKQVDDEVVVQTPSGPKEWYINEIRY 155


>gi|255068272|ref|ZP_05320127.1| transcription elongation factor GreB [Neisseria sicca ATCC 29256]
 gi|255047464|gb|EET42928.1| transcription elongation factor GreB [Neisseria sicca ATCC 29256]
          Length = 163

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 72/155 (46%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+  ++ EL     +ERP I++ ++ A + GD SEN +Y   K      + R+
Sbjct: 6   KNYITPVGWQALKDELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDHRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V++          F      + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLEAAVVVNPELREATDQVFFGATVGLLRGDGREQTVKIVGVDEIDTAQNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR LI    GD + +N P G +  EIL V +I
Sbjct: 126 SPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160


>gi|307132913|ref|YP_003884929.1| transcription elongation factor GreB [Dickeya dadantii 3937]
 gi|306530442|gb|ADN00373.1| Transcription elongation factor GreB [Dickeya dadantii 3937]
          Length = 166

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++ + QEL +  +E RP I + ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTDLITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +    V+D S     ++ FGA V +  ++   K  ++IVG  E   +   +S
Sbjct: 61  RVRYLRKRLQVVRVVDYSPQQDGKVFFGAWVEVENEDGDVK-RFRIVGPDEIYGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I +P+ARAL+ K + +   VN P G K + + ++ +
Sbjct: 120 IDAPMARALLKKAVDEEAVVNTPTGPKVWYVNKIDY 155


>gi|282878396|ref|ZP_06287184.1| putative transcription elongation factor GreA [Prevotella buccalis
           ATCC 35310]
 gi|281299474|gb|EFA91855.1| putative transcription elongation factor GreA [Prevotella buccalis
           ATCC 35310]
          Length = 155

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 89/151 (58%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+D +  EL   +  ERP+   AI+EAR  GDLSEN+EY AAKE Q   E ++ +
Sbjct: 3   YMSQEGYDNLVAELTRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           ++  I  A+++D+S +S D +   + V +    +  K  Y IV + EAD+++G +SI +P
Sbjct: 63  MKLTIAEAKIVDVSRLSADTVQILSKVEMTNMKTKSKMVYTIVSESEADLKAGKISIKTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           IA+ L+ K+ GD + +  P G     I ++ 
Sbjct: 123 IAQGLLNKKEGDEVDIKIPAGTIKLRIDKIT 153


>gi|229496616|ref|ZP_04390330.1| transcription elongation factor GreA [Porphyromonas endodontalis
           ATCC 35406]
 gi|229316513|gb|EEN82432.1| transcription elongation factor GreA [Porphyromonas endodontalis
           ATCC 35406]
          Length = 156

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 93/154 (60%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++   +T  GFD++  E+   ++EERP I +AI+EAR  GDLSENAEY AA+E Q L E 
Sbjct: 1   MEYHYMTQDGFDRLMDEISRLEREERPAIAQAIAEARDKGDLSENAEYDAAREAQGLLEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++++L+       +ID ST+   ++     V +   +      Y IV + +A+ +   +S
Sbjct: 61  KISQLKTQAANTRIIDESTIDTSKVQLLTKVKVKRLDDNSIIEYTIVPEIDANFKERKLS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +++PIAR LIGK++G+I  V  P G   +EIL++
Sbjct: 121 VTAPIARGLIGKKVGEIAEVQVPIGLLRFEILEI 154


>gi|146295865|ref|YP_001179636.1| transcription elongation factor GreA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409441|gb|ABP66445.1| transcription elongation factor GreA [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 162

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 91/152 (59%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  ++ + ++K  +EL   +  +R  + + I  AR++GDLSEN+EY  AK  Q   E R+
Sbjct: 9   KFQLSREAYEKYLKELENLKTVKRKEVAEKIKIARSFGDLSENSEYDEAKAEQAALEERI 68

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           A LE +I  A++ID   +S D +  G  V +   ++G+   Y IVG +EA+     +S  
Sbjct: 69  AYLEKLINNAKIIDKDEVSTDFVGIGTNVKIQNVDTGEIVEYSIVGSKEANPFEFKISDE 128

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+ +ALIGK++G+++ V  P G+  Y+IL++
Sbjct: 129 SPVGKALIGKKVGEVVEVTVPAGKFRYKILEI 160


>gi|326793978|ref|YP_004311798.1| transcription elongation factor GreB [Marinomonas mediterranea
           MMB-1]
 gi|326544742|gb|ADZ89962.1| transcription elongation factor GreB [Marinomonas mediterranea
           MMB-1]
          Length = 181

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G DK+  EL++  +E+RP + + +S+A   GD SENAEY   K+     + R+  
Sbjct: 28  YLTKEGADKLLAELKYLWKEKRPAVTQTVSDAAKQGDRSENAEYIYGKKQLREIDRRVRY 87

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  +    V+D +     RI FGA V+L  ++   +  ++IVG  E D  S  +SI SP
Sbjct: 88  LEKRLDHCTVVDRAPNDVSRIFFGAWVTLEHEDGKLE-TFRIVGPDELDHHSDYISIDSP 146

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +A+AL+ KE GD +++    GEK Y I  V +
Sbjct: 147 VAKALLKKEEGDEVTIRRAEGEKLYYIDSVEY 178


>gi|291563891|emb|CBL42707.1| transcription elongation factor GreA [butyrate-producing bacterium
           SS3/4]
          Length = 160

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK   +T  G  K + EL+  +   R  I + I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MADKKHILTYAGLKKYEDELQDLKVNRRREIAQKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ ELE ++  AEV+    ++ D+I  G  V + + +  ++  +++VG  EA+     
Sbjct: 61  ELRIEELEKLLKNAEVVVEDEVNLDKINVGCIVKVYDVDFDEEMEFKLVGSTEANSLENK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  ALIGK +GD++ V    G   Y++L + 
Sbjct: 121 ISNESPVGHALIGKRVGDVVDVETQSGVIQYKVLDIK 157


>gi|312898247|ref|ZP_07757638.1| transcription elongation factor GreA [Megasphaera micronuciformis
           F0359]
 gi|310620744|gb|EFQ04313.1| transcription elongation factor GreA [Megasphaera micronuciformis
           F0359]
          Length = 161

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 90/157 (57%), Gaps = 4/157 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M ++  +T+ G +K+++EL   +   R  + + I EA A GDLSEN+EY  AK  Q   E
Sbjct: 1   MSNETLITADGLEKLKEELNELKSVRRIAVSQRIKEAIALGDLSENSEYDDAKNEQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELEN I  A++I+ ST    ++  G+ V L +  + ++  Y +VG  EAD  +  +
Sbjct: 61  GRIVELENKIRTAKIIEESTDDVAKVRLGSKVILEDVETKERFEYTVVGTAEADPFNNRI 120

Query: 121 SISSPIARALIGKELGDI----ISVNAPGGEKTYEIL 153
           S  SP+  A++G+ +       +SV AP GE  Y+IL
Sbjct: 121 SNESPVGAAILGQNVDKENPVIVSVKAPAGEVQYKIL 157


>gi|255994119|ref|ZP_05427254.1| transcription elongation factor GreA [Eubacterium saphenum ATCC
           49989]
 gi|255993787|gb|EEU03876.1| transcription elongation factor GreA [Eubacterium saphenum ATCC
           49989]
          Length = 158

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M + + +T KG ++ Q+E        R  +   I EA AYGDLSEN+EY AAK  Q   E
Sbjct: 1   MSETVFLTQKGLEEKQKEYDELVGVRRKEVADRIKEATAYGDLSENSEYDAAKNEQAELE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R++ LE+++   E+ID +   GD +  G  V L       ++ Y+IVG  EAD  + L+
Sbjct: 61  ERISVLEDMLNNYEIIDSNAAKGDVVDLGLNVHLKNITKKKEETYRIVGSAEADPFNNLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
           S  SPI + L+  ++G+ +S++ P G    Y+IL++
Sbjct: 121 SNESPIGKGLLKHKVGETVSIDIPSGKTVKYKILKI 156


>gi|170724521|ref|YP_001758547.1| transcription elongation factor GreB [Shewanella woodyi ATCC 51908]
 gi|169809868|gb|ACA84452.1| transcription elongation factor GreB [Shewanella woodyi ATCC 51908]
          Length = 161

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 87/156 (55%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  + +T KG+  + +EL++  +E RP I K + EA A GD SENA+Y   K L    + 
Sbjct: 1   MTAMLITRKGWQALDKELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +    ++D S     ++ FGA V L  ++    + Y+IVG  E D + G ++
Sbjct: 61  RVRYLVKRVEDLTIVDYSPQQEGKVFFGAWVELENESGDVVQ-YRIVGKDELDTKLGYIT 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALIGK++ D + V  P G K + + ++ +
Sbjct: 120 IDSPMARALIGKQVDDEVVVKTPSGAKEWYVNKIQY 155


>gi|34498839|ref|NP_903054.1| transcription elongation factor GreB [Chromobacterium violaceum
           ATCC 12472]
 gi|34104691|gb|AAQ61048.1| transcription elongation factor [Chromobacterium violaceum ATCC
           12472]
          Length = 184

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 79/157 (50%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T  G+ +++ EL      ERP I++ ++ A + GD SEN +Y   K      + 
Sbjct: 25  STKNYITPMGWQRLKDELYHLVNRERPEIVQVVNWAASNGDRSENGDYLYGKRRLREIDR 84

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +  AEV+D          F +   L+++  G ++   IVG  E D+Q G +S
Sbjct: 85  RIRFLTKRLEIAEVVDPEAREATDQVFFSATVLIQRGDGSEQRLSIVGVDEIDLQRGRIS 144

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
             SPIARAL+    GD +    P G++  E+L+V ++
Sbjct: 145 WISPIARALLKSREGDTVLFRGPDGDEDIEVLEVSYV 181


>gi|89892964|ref|YP_516451.1| hypothetical protein DSY0218 [Desulfitobacterium hafniense Y51]
 gi|219666231|ref|YP_002456666.1| transcription elongation factor GreA [Desulfitobacterium hafniense
           DCB-2]
 gi|89332412|dbj|BAE82007.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219536491|gb|ACL18230.1| transcription elongation factor GreA [Desulfitobacterium hafniense
           DCB-2]
          Length = 156

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 2/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T +G  +++ EL   +  +R  + + I +A  +GD+SEN+EY  AK  Q   
Sbjct: 1   MAEKEVILTIEGLKRLEDELETLKTVKRREVAERIKQAIEFGDISENSEYDDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A VID      + +A G TV L +K  G+++ Y IVG  EAD  S  
Sbjct: 61  EGRIITLEKMLRNARVID-DLEGSEVVALGTTVILKDKEFGEEEEYTIVGSAEADPGSNK 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +A++G+  G ++ +N P G   YEI+ + 
Sbjct: 120 ISNESPVGKAVLGQPKGTVVEINVPAGILYYEIVDIR 156


>gi|266624959|ref|ZP_06117894.1| transcription elongation factor GreA [Clostridium hathewayi DSM
           13479]
 gi|288863148|gb|EFC95446.1| transcription elongation factor GreA [Clostridium hathewayi DSM
           13479]
          Length = 160

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK   +T +G  + + EL+  +  +R  + + I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MADKKNILTYEGLKRYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ ELE ++  AEV+    +  D+I  G  V + + +  ++  ++IVG  EA+     
Sbjct: 61  ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKVYDVDEDEEMEFKIVGSTEANSLQNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +AL+GK+ GD++ V    G   Y++L++ 
Sbjct: 121 ISNESPVGQALMGKKAGDVVDVETQAGVIQYKVLEIQ 157


>gi|85060298|ref|YP_456000.1| transcription elongation factor GreB [Sodalis glossinidius str.
           'morsitans']
 gi|84780818|dbj|BAE75595.1| transcription elongation factor GreB [Sodalis glossinidius str.
           'morsitans']
          Length = 155

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 79/156 (50%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+ ++Q EL    +  RP I + ++ A + GD SENA+Y   K++    + 
Sbjct: 1   MKTNLITRQGYQELQDELDHLWKRYRPEITEKVAWAASLGDRSENADYHYNKKILREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L  ++  A V+D S     RI FGA V +       K  ++I G  E       +S
Sbjct: 61  RVRYLRRVLKEARVVDYSPQQEGRIFFGAWVEVENAEGETK-RFRIAGPDEIYKHKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALI K + D   V  PGG +T+ I  + +
Sbjct: 120 IDSPMARALIKKAVDDEAEVVTPGGHRTWYINAISY 155


>gi|323494580|ref|ZP_08099684.1| transcription elongation factor [Vibrio brasiliensis LMG 20546]
 gi|323311183|gb|EGA64343.1| transcription elongation factor [Vibrio brasiliensis LMG 20546]
          Length = 159

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 88/157 (56%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+D++++EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTNLITREGYDRLKRELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   + + +V+D S     ++ FGA V +  +    K  ++IVG  E      G +
Sbjct: 61  RVRYLRKRLEQVKVVDYSPQQEGKVFFGAWVEIENEAGEIKS-FRIVGPDEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+ D  SV  P G K + + Q+ +
Sbjct: 120 SIDSPMARALLKKEVDDEFSVKTPDGYKEWFVNQIRY 156


>gi|300727402|ref|ZP_07060811.1| transcription elongation factor GreA [Prevotella bryantii B14]
 gi|299775282|gb|EFI71881.1| transcription elongation factor GreA [Prevotella bryantii B14]
          Length = 155

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 93/150 (62%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+  EL++ +  ERP+   AI+EA   GDLSEN+EY AAKE Q   E ++ +
Sbjct: 3   YMSQEGYDKLVAELKYLESVERPKASAAIAEAADKGDLSENSEYDAAKENQAHLEAKINQ 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           ++  I++A+++D+S +S D +    TV +    +  K  Y IV + EAD++SG +SI +P
Sbjct: 63  IKMTISQAKIVDMSRLSADAVQIMTTVEMTNLGNNAKMKYTIVSESEADLKSGKISIKTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+ K++GD   +  P G     I ++
Sbjct: 123 IAQGLLNKKVGDTAEIKIPRGTIHLRIDKI 152


>gi|257440517|ref|ZP_05616272.1| transcription elongation factor GreA [Faecalibacterium prausnitzii
           A2-165]
 gi|257197021|gb|EEU95305.1| transcription elongation factor GreA [Faecalibacterium prausnitzii
           A2-165]
          Length = 161

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 1/158 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +I +++ G   +Q EL + +   R  + + I EAR++GDLSEN+EY  AK  Q L E
Sbjct: 1   MAQEIKMSASGLKAMQDELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ ELE ++  A +ID S +S D +A G  VS+      + + Y IVG  EAD  +G +
Sbjct: 61  NRITELEQMVKNAVIIDESELSVDSVAVGTHVSIKMIGDDEAEEYDIVGRTEADPINGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           S  SP+  AL+GK +G+   V  P G+   YE+L +  
Sbjct: 121 SDESPVGHALLGKAVGEKAEVLLPSGQIVEYEVLAITH 158


>gi|160944698|ref|ZP_02091925.1| hypothetical protein FAEPRAM212_02212 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443882|gb|EDP20886.1| hypothetical protein FAEPRAM212_02212 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104346|emb|CBL01890.1| transcription elongation factor GreA [Faecalibacterium prausnitzii
           SL3/3]
          Length = 161

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 1/158 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +I +++ G   +Q+EL + +   R  + + I EAR++GDLSEN+EY  AK  Q L E
Sbjct: 1   MAQEIKMSAAGLKAMQEELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ ELE  I  A +ID S +S D ++ G  V++ E    + + Y IVG  EAD  +G +
Sbjct: 61  NRITELEQTIKNAVIIDESELSVDNVSVGTHVTIRETGEDEAEEYDIVGRTEADAFNGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           S  SP+  AL+GK +GD   V  P G    Y +L +  
Sbjct: 121 SDESPVGHALMGKAVGDKAEVLLPTGQTVVYTVLAITH 158


>gi|50123038|ref|YP_052205.1| transcription elongation factor GreB [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613564|emb|CAG77015.1| transcription elongation factor [Pectobacterium atrosepticum
           SCRI1043]
          Length = 159

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+DK++ E       +RP I K +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTNLITREGYDKLRAEHEHLWNIKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +   +++D S      + FGA + +  +    K   +IVG  E        +
Sbjct: 61  RVRYLRKCLAELKIVDYSPQQDGSVFFGAWIEIENEQGDVK-RLRIVGPDEIYGDSKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI SP+ARA++ K + +  +VN P G + + I  + ++
Sbjct: 120 SIDSPMARAMLKKAVDEEFTVNTPDGPREWFINAIDYV 157


>gi|329894420|ref|ZP_08270267.1| Transcription elongation factor GreB [gamma proteobacterium
           IMCC3088]
 gi|328923067|gb|EGG30391.1| Transcription elongation factor GreB [gamma proteobacterium
           IMCC3088]
          Length = 171

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 82/152 (53%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T+ G   ++ EL    + ERP++  A+ EA   GD SEN +Y   K+     + R+  
Sbjct: 14  YITAAGAAALKSELDELWRVERPKVTDAVREAAKNGDRSENGDYIYGKKRLREIDSRVRY 73

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +   +V+  +    DRI FGA+V+L E++    +   IVG  E D ++G +SI +P
Sbjct: 74  LTKRLESLKVVSAAPSEPDRIFFGASVTLEEEDGSL-QTLHIVGADEIDPKTGKISIDAP 132

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I+RAL+GK + D I   AP G +   ++ V +
Sbjct: 133 ISRALLGKRIDDEIEYQAPAGRQVRYVIDVNY 164


>gi|37680902|ref|NP_935511.1| transcription elongation factor GreA [Vibrio vulnificus YJ016]
 gi|37199652|dbj|BAC95482.1| transcription elongation factor [Vibrio vulnificus YJ016]
          Length = 165

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 115/157 (73%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T++G +++ ++   R  + RP I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 9   MEKVPMTARG-EQLLRKELERLLKRRPLITEAIAEARELGDLKENAEYHAAREEQGICEA 67

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID+S M  + ++ FGATV+L++ ++ ++K YQIVGD EAD++SG +
Sbjct: 68  QIRDIEYKLSVAQVIDVSKMENNGKVIFGATVTLIDCDTEEEKTYQIVGDDEADIKSGRI 127

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIAR LIGK  GD ++++ PGG K +EI  V +
Sbjct: 128 SVNSPIARGLIGKMEGDEVAISTPGGMKDFEIDSVEY 164


>gi|304383994|ref|ZP_07366450.1| transcription elongation factor GreA [Prevotella marshii DSM 16973]
 gi|304334886|gb|EFM01160.1| transcription elongation factor GreA [Prevotella marshii DSM 16973]
          Length = 202

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 93/150 (62%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+  EL+  +  ERP+I  AI+EAR  GDLSEN+EY+AAKE Q   E R+ +
Sbjct: 50  YMSQEGYDKMIAELQRLEAVERPKISAAIAEARDKGDLSENSEYEAAKEAQAHLEDRINK 109

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           ++  I  A+++D S +S + +   + V +    +  K  Y IV + EA+++ G ++I++P
Sbjct: 110 MKRTIAEAKIVDTSRLSNEAVQILSKVEMTNLGNKAKMTYTIVSENEANLKEGKIAITTP 169

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+ K++GD + +  P G     I ++
Sbjct: 170 IAQGLLNKKVGDEVEIAIPRGTIKLRIDKI 199


>gi|186475439|ref|YP_001856909.1| transcription elongation factor GreB [Burkholderia phymatum STM815]
 gi|184191898|gb|ACC69863.1| transcription elongation factor GreB [Burkholderia phymatum STM815]
          Length = 190

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 76/154 (49%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ +++ EL     E RP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 29  KNYITPAGYRRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 88

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   I  AEV++ S        F           G+    +IVG  E ++  G VS  
Sbjct: 89  RFLTKRIDLAEVVNSSRQENTDQVFFGATVDYATEDGETHTVRIVGIDEVNLDEGHVSWI 148

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARAL+  ++GD ++++ P G +  ++L V +
Sbjct: 149 SPIARALLKAKVGDQVTLHTPAGPQPIDVLDVRY 182


>gi|329121808|ref|ZP_08250424.1| transcription elongation factor GreA [Dialister micraerophilus DSM
           19965]
 gi|327468081|gb|EGF13569.1| transcription elongation factor GreA [Dialister micraerophilus DSM
           19965]
          Length = 162

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 1/154 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +  VT +G +K+Q+EL   + ++R  + + + EA + GDLSEN+EY  AK  Q+  EG
Sbjct: 4   MQRTLVTREGLEKMQKELDELRSKKRGEVAQRLKEAISMGDLSENSEYDDAKNEQSFVEG 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE  I  A +I      G R+   +TV++ + + G ++   IVG  E+D   G +S
Sbjct: 64  RILELETKIRTAVLIS-QKKKGGRVDLASTVTIQDMSDGSEETVTIVGSTESDPFEGKIS 122

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP  RAL+G +LGDI+ V+AP G   Y+I  +
Sbjct: 123 NESPAGRALMGSKLGDIVEVDAPTGIIKYKITGI 156


>gi|218708218|ref|YP_002415839.1| transcription elongation factor GreB [Vibrio splendidus LGP32]
 gi|218321237|emb|CAV17187.1| Transcription elongation factor greB [Vibrio splendidus LGP32]
          Length = 160

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++ E      E+RP I K ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITREGYNKLKAEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +    ++D S     ++ FGA V +   +   K  ++IVG +E      G +
Sbjct: 61  RVRFLRKFLPDVTIVDYSPQQEGKVFFGAWVEIENDDGEIK-KFRIVGPEEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+ D  +V  P G+K + I  + +
Sbjct: 120 SIDSPMARALLKKEVDDEFTVTTPEGDKEWFINSIRY 156


>gi|332798250|ref|YP_004459749.1| transcription elongation factor GreA [Tepidanaerobacter sp. Re1]
 gi|332695985|gb|AEE90442.1| transcription elongation factor GreA [Tepidanaerobacter sp. Re1]
          Length = 158

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 91/156 (58%), Gaps = 1/156 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  K + +T +G  K+++EL + +  +R  I   I +A  +GD+SEN+EY  AK  Q   
Sbjct: 1   MAKKEVVLTQEGLKKMEEELEYLKSVKRREIAARIKQAIDFGDISENSEYDEAKNEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+A LE  +  A++ID   +S D ++ G+ V L + ++GD   Y IVG  EA+     
Sbjct: 61  EGRIALLEEKLRNAKLIDEVDISTDVVSVGSKVKLKDLDTGDIFEYMIVGSAEANPIENK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SP+  ALIG++ G I+ V+ P G   YEI+ +
Sbjct: 121 ISNESPVGNALIGEKKGSIVEVSVPAGIIKYEIMDI 156


>gi|148654263|ref|YP_001274468.1| transcription elongation factor GreA [Roseiflexus sp. RS-1]
 gi|229485907|sp|A5UPG5|GREA_ROSS1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|148566373|gb|ABQ88518.1| transcription elongation factor GreA [Roseiflexus sp. RS-1]
          Length = 157

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK   +T  G  +++ EL     + R  I + I+ A+  GD+SE+ EY+ AK  Q   
Sbjct: 1   MSDKPAYLTRDGRARLEAELEELVTKGRKEIAERINAAKELGDISESGEYEDAKNQQAHL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+ E+++I+ RA++ID        +  G+ V++       ++ + IVG  EA    G 
Sbjct: 61  EGRIREIKSILARAQIIDEENGDNHEVRIGSRVTVRIDGEDGEETWTIVGSTEAKPSEGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPI  AL+GK     ++V  P G     I+ + 
Sbjct: 121 ISNESPIGSALLGKRPRQKVTVETPSGTMKLTIVDIQ 157


>gi|261749563|ref|YP_003257249.1| transcription elongation factor [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497656|gb|ACX84106.1| transcription elongation factor [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 162

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 60/160 (37%), Positives = 98/160 (61%), Gaps = 4/160 (2%)

Query: 2   VDKI---PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           ++K     +T +G  K+QQE+   +  ERP+I   I+EAR  GDLSENAEY A KE Q  
Sbjct: 1   MEKEKFEYITKEGLKKLQQEIERLENIERPKISMQIAEARDKGDLSENAEYDAIKEAQEF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E  +A+L+  ++ A +ID S ++  R++  +TV +     G ++ Y +V + EAD++SG
Sbjct: 61  LEMNIAKLKKKLSNARIIDGSQINRTRVSILSTVRVKNLTYGGEQIYTLVPEGEADLKSG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
            +SI++PI+  L+GK++G I  +  P      YEIL++ +
Sbjct: 121 KISINTPISTGLLGKQVGQIAHIKLPNKMILDYEILEIAF 160


>gi|325261221|ref|ZP_08127959.1| transcription elongation factor GreA [Clostridium sp. D5]
 gi|324032675|gb|EGB93952.1| transcription elongation factor GreA [Clostridium sp. D5]
          Length = 161

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 90/157 (57%), Gaps = 2/157 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T  G   ++ EL   +  +R  +   I EAR  GDLSENAEY AAK+ Q  
Sbjct: 1   MAEAKKRLLTYAGLKSLEDELENLKVVKRKEVAAKIKEAREQGDLSENAEYDAAKDEQRD 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ELE+I+  AEV+    +  D+I  G  V + +    ++ +++IVG  EA+   G
Sbjct: 61  IEARIEELESILKNAEVVVEDEVDFDKINVGCKVKVFDITYDEEMDFKIVGSTEANSLEG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+ +AL+G++ GD++ V    G+  Y++L++
Sbjct: 121 KISNESPVGQALMGRKTGDLVEVETQAGQIQYKVLEI 157


>gi|229829708|ref|ZP_04455777.1| hypothetical protein GCWU000342_01805 [Shuttleworthia satelles DSM
           14600]
 gi|229791697|gb|EEP27811.1| hypothetical protein GCWU000342_01805 [Shuttleworthia satelles DSM
           14600]
          Length = 160

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 3/159 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +G  K++ EL   +  +R    + I+EAR  GDLSENAEY+AAKE Q  
Sbjct: 1   MAEAKKNLMTYEGLQKLEAELEDLKTNKRKANSRDIAEAREQGDLSENAEYEAAKEEQRQ 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ E+  I+  AE+ D   +    +  G+TV+L++    ++  Y+IVG  E +   G
Sbjct: 61  IENRINEITKILKNAEIAD-DIVDKSIVNIGSTVTLLDLEYDEELTYKIVGSTEVNSLGG 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +S  SP+  A++  + G+ ++V    G   Y+IL +  
Sbjct: 120 KISNESPVGAAILHHKAGETVTVETEAGSFKYKILSISH 158


>gi|332638064|ref|ZP_08416927.1| transcription elongation factor GreA [Weissella cibaria KACC 11862]
          Length = 161

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/158 (39%), Positives = 93/158 (58%), Gaps = 3/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T +G  KI++EL     E R  I   I  AR++GDLSEN+EYQ+AK+ Q  
Sbjct: 1   MAEEKTFPMTVEGKAKIEEELNTLITETRAEITGRIQIARSFGDLSENSEYQSAKDEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  L+N++  A +ID S ++ D ++ G  V+  E    + + Y IVG  EA+   G
Sbjct: 61  VEGRINTLQNMLDNAVIIDSSEIADDEVSVGKKVTFKELPDEEPETYAIVGAVEANPLEG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
            +S  SPIA AL+GK++GD + V  P G     EI+ V
Sbjct: 121 KISNESPIAVALMGKKVGDQVEVPLPNGASMDVEIMAV 158


>gi|46198565|ref|YP_004232.1| transcription elongation factor greA [Thermus thermophilus HB27]
 gi|55980591|ref|YP_143888.1| transcription elongation factor GreA [Thermus thermophilus HB8]
 gi|18034649|gb|AAL57613.1|AF456236_1 transcription cleavage factor GreA [Thermus thermophilus]
 gi|46196187|gb|AAS80605.1| transcription elongation factor greA [Thermus thermophilus HB27]
 gi|55772004|dbj|BAD70445.1| transcription elongation factor GreA [Thermus thermophilus HB8]
          Length = 155

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 93/156 (59%), Gaps = 3/156 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   + +T +G+ ++Q+EL   +  +R  I     +A   GDL ENA Y  A+     NE
Sbjct: 1   MKKPVYLTPEGYRRLQEELNHLKTVKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+A+LE++++RA +++    S D++A G  V L E  +G++ +  IVG  EAD+ SG +
Sbjct: 61  ARIAQLEDLLSRAVIVE--NGSFDQVALGCQVEL-ETETGERLSLAIVGSHEADIFSGKI 117

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SP+ +AL+GK++GD++ +    G + Y IL++ 
Sbjct: 118 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEIK 153


>gi|313892199|ref|ZP_07825792.1| transcription elongation factor GreA [Dialister microaerophilus
           UPII 345-E]
 gi|313119337|gb|EFR42536.1| transcription elongation factor GreA [Dialister microaerophilus
           UPII 345-E]
          Length = 162

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 91/154 (59%), Gaps = 1/154 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +  VT +G +K+Q+EL   + ++R  + + + EA + GDLSEN+EY  AK  Q+  EG
Sbjct: 4   MQRTLVTREGLEKMQRELDELRSKKRGEVAQRLKEAISMGDLSENSEYDDAKNEQSFVEG 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE  I  A +I      G R+   +TV++ + + G ++   IVG  E+D   G +S
Sbjct: 64  RILELETKIRTAVLIS-QKKKGGRVDLASTVTIQDMSDGSEETVTIVGSTESDPFEGKIS 122

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP  RAL+G +LGDI+ V+AP G   Y+I  +
Sbjct: 123 NESPAGRALMGSKLGDIVEVDAPTGIIKYKITGI 156


>gi|285017768|ref|YP_003375479.1| transcription elongation factor greb (transcript cleavage factor
           greb) protein [Xanthomonas albilineans GPE PC73]
 gi|283472986|emb|CBA15491.1| probable transcription elongation factor greb (transcript cleavage
           factor greb) protein [Xanthomonas albilineans]
          Length = 168

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 83/151 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL    +  RP +++A++ A A GD SENAEY   K+     + R+  L
Sbjct: 15  ITPEGHARLKAELDDLWRLRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+  +      + FGA ++L + +SG+ + Y+IVG  E D   G +SI SP+
Sbjct: 75  SKRLEALRVVADAPSDPQAVFFGARIALEDVDSGELRRYRIVGPDETDAARGWISIDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+ K + D +    PGG  ++ ++ V +
Sbjct: 135 ARALLKKRIDDEVEAQLPGGRHSFVVVAVEY 165


>gi|145300940|ref|YP_001143781.1| transcription elongation factor GreB [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142853712|gb|ABO92033.1| transcription elongation factor GreB [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 157

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 84/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K+++EL +  +EERP   + ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTKLITREGYNKLKEELDFLWREERPETTRKVAWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +    ++D +     ++ FGA V +  +    K  ++IVG  E   +   +S
Sbjct: 61  RVRYLRKCLEELGIVDYAPAQEGKVFFGAWVEVENEEGDTK-RFRIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+GD   V  P G+  + I  + +
Sbjct: 120 IDSPMARALLKKEVGDEAIVPTPVGDACWYINDISY 155


>gi|302385514|ref|YP_003821336.1| GreA/GreB family elongation factor [Clostridium saccharolyticum
           WM1]
 gi|302196142|gb|ADL03713.1| GreA/GreB family elongation factor [Clostridium saccharolyticum
           WM1]
          Length = 160

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 88/154 (57%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            K  +T +G  K + EL+  +  +R  + + I EAR  GDLSENAEY AAK+ Q   E R
Sbjct: 4   KKNILTYEGLKKYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIELR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELE ++  AEV+    +  D+I  G  V + + +  ++  ++IVG  EA+     +S 
Sbjct: 64  IEELEKLLKNAEVVVEDEIDLDKINIGCKVKVYDVDEDEEMEFKIVGSTEANSLQNKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+  ALIG+++GD++ V    G   Y++L++ 
Sbjct: 124 ESPVGHALIGRKVGDVVDVETQSGVIQYKVLEIQ 157


>gi|153833935|ref|ZP_01986602.1| transcription elongation factor GreB [Vibrio harveyi HY01]
 gi|148869773|gb|EDL68750.1| transcription elongation factor GreB [Vibrio harveyi HY01]
          Length = 161

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+++++ EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTNLITREGYNRLKTELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   + + +++D S     ++ FGA V +  +    K  ++IVG  E      G +
Sbjct: 61  RVRYLRKRLEQVKMVDYSPQQEGKVFFGAWVEIENEAGDVKN-FRIVGPDEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+ D  +V  P G K + I  + +
Sbjct: 120 SIDSPMARALLKKEVDDEFAVRTPEGYKEWFINSIRY 156


>gi|21231994|ref|NP_637911.1| transcription elongation factor GreB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767879|ref|YP_242641.1| transcription elongation factor GreB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|25452985|sp|Q8P7P8|GREB_XANCP RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|21113729|gb|AAM41835.1| transcription elongation factor and transcript cleavage
           [Xanthomonas campestris pv. campestris str. ATCC 33913]
 gi|66573211|gb|AAY48621.1| transcription elongation factor and transcript cleavage
           [Xanthomonas campestris pv. campestris str. 8004]
          Length = 168

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 81/151 (53%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL    +  RP +++A++ A A GD SENAEY   K+     + R+  L
Sbjct: 15  ITPEGHARLKAELDELWRLRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+D +      + FGA V L + +SG+   Y+IVG  E D   G +SI SP+
Sbjct: 75  SKRLEALRVVDTAPTDPQAVFFGAQVELEDADSGELLRYRIVGPDETDAGRGWISIDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+ K + D      P G+ T+ ++ V +
Sbjct: 135 ARALLKKRVDDEFEAQLPSGKHTFVVVVVEY 165


>gi|167629420|ref|YP_001679919.1| transcription elongation factor grea [Heliobacterium modesticaldum
           Ice1]
 gi|167592160|gb|ABZ83908.1| transcription elongation factor grea [Heliobacterium modesticaldum
           Ice1]
          Length = 160

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 90/156 (57%), Gaps = 1/156 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T++G  K+++EL + +  +R ++ + I +A  YGD+SEN+EY+ AK  Q   
Sbjct: 1   MEEKQVMLTAEGLKKLEEELEFLKSHKRGQVAERIKQAIDYGDISENSEYEDAKNEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A++I+      + +  GA V L +     +  Y IVG  EAD     
Sbjct: 61  EGRIITLEKMLRNAKLIEGGEGETNVVTIGARVLLKDLEDDSEFEYTIVGSAEADPSQSK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SP+ +AL+G+  G ++ V  P G+  YEI+ +
Sbjct: 121 ISNVSPVGKALLGQPKGAVVEVQVPMGKIKYEIVDI 156


>gi|262369479|ref|ZP_06062807.1| transcription elongation factor and transcript cleavage
           [Acinetobacter johnsonii SH046]
 gi|262315547|gb|EEY96586.1| transcription elongation factor and transcript cleavage
           [Acinetobacter johnsonii SH046]
          Length = 157

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 83/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++  +T++G+ ++Q EL    ++ERP I K +S A + GD SENA+Y   K      + 
Sbjct: 1   MNRKLLTAEGYQRLQDELNDLVRKERPEITKIVSWAASLGDRSENADYIYNKRKLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L  +   A  ++ S     +  FGA V L          ++IVGD E   +   +S
Sbjct: 61  RIRYLTKLFEVAYKVEYSPEQDGKAYFGAWVELENDEGEII-KFRIVGDDEIYGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SPIA+A +GK + D I V+ P G+K + I ++ +
Sbjct: 120 LQSPIAKACLGKSVDDEIQVHTPTGKKNWYIAKIFY 155


>gi|255318589|ref|ZP_05359822.1| transcription elongation factor GreB [Acinetobacter radioresistens
           SK82]
 gi|262378815|ref|ZP_06071972.1| transcription elongation factor GreB [Acinetobacter radioresistens
           SH164]
 gi|255304581|gb|EET83765.1| transcription elongation factor GreB [Acinetobacter radioresistens
           SK82]
 gi|262300100|gb|EEY88012.1| transcription elongation factor GreB [Acinetobacter radioresistens
           SH164]
          Length = 159

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 79/156 (50%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G D++  EL+    EERP I K ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MKSNLITRAGHDRLVAELQQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +    ++D S     R+ FGA V +  +    K    +  D+  D     +S
Sbjct: 61  RVRYLGKRLEELRIVDHSPEQDGRVYFGAWVDIENEYGEQKTLRIVGVDEIYDHHPQHIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ K++ D I V  P G+K + I  + +
Sbjct: 121 IDSPMARALLSKQVNDEIEVMTPSGKKQWYINAIRY 156


>gi|329119869|ref|ZP_08248543.1| transcription elongation factor GreB [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464025|gb|EGF10336.1| transcription elongation factor GreB [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 190

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 73/154 (47%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T  G+  ++ EL     +ERP I++ ++ A + GD SEN +Y   K      + R+ 
Sbjct: 34  NYITPAGWQALKDELYSLVNKERPEIVQVVNWAASNGDRSENGDYLYGKRRMREIDRRIR 93

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   +  A+VID  T       F      + + +G ++   IVG  E D     +S  S
Sbjct: 94  FLTKRLEAAQVIDPETREATDQVFFGATVTLLRGNGSEQVVSIVGIDETDAARNKISWIS 153

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           P+AR LI    GD + +  P G +  EIL+V +I
Sbjct: 154 PLARCLIKAREGDAVVLRTPEGREDIEILEVAYI 187


>gi|302189947|ref|ZP_07266620.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           syringae 642]
          Length = 157

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 88/158 (55%), Gaps = 2/158 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T  G + +++EL +  +E RP I + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKI-ITRDGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V+  S     R+ FGA V +  +    K  ++IVG  E   ++  +
Sbjct: 60  RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIENEAGDLK-KFRIVGYDEIYGRNDYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI SP+ARAL+ KE+GD + VN P GEK + +  + ++
Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIDYV 156


>gi|103487218|ref|YP_616779.1| transcription elongation factor GreB [Sphingopyxis alaskensis
           RB2256]
 gi|98977295|gb|ABF53446.1| transcription elongation factor GreB [Sphingopyxis alaskensis
           RB2256]
          Length = 160

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 2/154 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             ++  GF  ++ E      +ERP++++ IS A   GD SEN +Y   ++     + R+ 
Sbjct: 7   NIISPAGFAALRAEYDALLGDERPKLVEVISWAAGNGDRSENGDYIYGRKRLREIDRRLG 66

Query: 65  ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            L   +  A V+D +      RI FGATV L + +   ++   +VGD EA+  SG +  +
Sbjct: 67  FLARRMKAARVVDPAQQPDKSRIWFGATVELADDDDA-RRTVTLVGDDEAEAGSGRIGWN 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL G  +GD+ +V  P G K +E++ + +
Sbjct: 126 SPLARALRGAAVGDLRTVQLPAGPKLWEVIAIRY 159


>gi|163802255|ref|ZP_02196150.1| transcription elongation factor GreB [Vibrio sp. AND4]
 gi|159174060|gb|EDP58870.1| transcription elongation factor GreB [Vibrio sp. AND4]
          Length = 161

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++ E      E+RP I K ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITREGYNKLKAEHDHLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +   +++D S     ++ FGA V +  +    K+ ++IVG +E      G +
Sbjct: 61  RVRFLRKFLPEVKIVDYSPQQEGKVFFGAWVEIENEAGDVKQ-FRIVGPEEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI SP+ARAL+ KE+ D I+V  P G+K + I  + ++
Sbjct: 120 SIDSPMARALLKKEVDDEITVRTPEGDKEWFINSITYM 157


>gi|260774750|ref|ZP_05883653.1| transcription elongation factor GreB [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609312|gb|EEX35464.1| transcription elongation factor GreB [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 158

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 87/157 (55%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +GFD++++EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTNLITREGFDRLKKELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD-VQSGLV 120
           R+  L   + + +V+D +     ++ FGA V +  +    K  ++IVG  E        +
Sbjct: 61  RVRYLRKRLEQVKVVDYAPQQEGKVFFGAWVEVENEAGEVK-KFRIVGPDEIYGGAKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+ D  SV  P GEK + +  + +
Sbjct: 120 SIDSPMARALLKKEVDDEFSVKTPEGEKEWFVNSICY 156


>gi|258646084|ref|ZP_05733553.1| transcription elongation factor GreA [Dialister invisus DSM 15470]
 gi|260403459|gb|EEW97006.1| transcription elongation factor GreA [Dialister invisus DSM 15470]
          Length = 160

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VT +G +K+Q+EL   + + R  + + + EA A GDLSEN+EY  AK  Q+  EGR+ EL
Sbjct: 9   VTKEGLEKLQKELDELRTKTRGEVAQRLKEAIAMGDLSENSEYDDAKNQQSFVEGRIKEL 68

Query: 67  ENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  I  AE+ID        R+  G TV++       ++  +IVG  E+D   G +S  SP
Sbjct: 69  EQQIRTAEIIDSGKKGRKSRVDVGMTVTIEALEDHVEETVKIVGSTESDPFEGKISNESP 128

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           + RAL+G + GDI+   AP G   Y+++++ 
Sbjct: 129 VGRALMGAKAGDIVEAEAPSGVVKYKVIKIK 159


>gi|94499115|ref|ZP_01305653.1| transcription elongation factor GreB [Oceanobacter sp. RED65]
 gi|94428747|gb|EAT13719.1| transcription elongation factor GreB [Oceanobacter sp. RED65]
          Length = 163

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T +G   ++ EL +  + ERP++ + + +A A GD SENAEY   K+     +
Sbjct: 1   MSKADLITPEGEQTLKDELDYLWRTERPKVTQQVKDAAALGDRSENAEYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   + +  V+        ++ F A + +  +  G    Y+IVG  E D +   +
Sbjct: 61  RRVRFLSKRLEKLTVVRDKPADQTKVFFSAWIQIENEQ-GQVHIYRIVGPDEIDHRPEYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI+SP+A+AL+GK+ GD ++V  P G     + +V +
Sbjct: 120 SINSPVAKALLGKQAGDDVAVQTPKGLSELYLDKVSY 156


>gi|90412689|ref|ZP_01220690.1| transcription elongation factor GreB [Photobacterium profundum
           3TCK]
 gi|90326264|gb|EAS42683.1| transcription elongation factor GreB [Photobacterium profundum
           3TCK]
          Length = 156

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+DK+++EL +  +EERP I K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTNLITREGYDKLKKELDFLWREERPEITKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +V+D S     ++ FGA V +  + +  K  ++IVG  E   ++  +S
Sbjct: 61  RVRYLRKRLEVVKVVDYSPQQDGKVFFGAFVEIENEEAEQK-TFRIVGPDEIYGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+ +   V  P G+K + +  + +
Sbjct: 120 IDSPMARALLKKEVDEEFEVVTPQGKKLWFVNTIRY 155


>gi|108758975|ref|YP_631387.1| transcription elongation factor GreB [Myxococcus xanthus DK 1622]
 gi|108462855|gb|ABF88040.1| transcription elongation factor GreB [Myxococcus xanthus DK 1622]
          Length = 176

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 77/154 (50%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T  G +++ +EL     EERP++   +S A A GD SENAEY   K+     + R+
Sbjct: 22  RRYLTRAGAERLHRELVHLLNEERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRRL 81

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L+  +  A ++  +  +     F      +E   G +  YQIVG  E D   G +S+ 
Sbjct: 82  RFLQKRLDTATIVTPAEQTDRSRVFFGATVSLEDEDGGRSTYQIVGSDEIDASGGRISVE 141

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ RAL+ K +GD + V  P G+    ++ + +
Sbjct: 142 SPMGRALLRKAVGDSVEVRRPRGDIELTVVDIRY 175


>gi|27365048|ref|NP_760576.1| transcription elongation factor GreA [Vibrio vulnificus CMCP6]
 gi|320155431|ref|YP_004187810.1| transcription elongation factor GreA [Vibrio vulnificus MO6-24/O]
 gi|31076695|sp|Q8DBW9|GREA_VIBVU RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|27361194|gb|AAO10103.1| Transcription elongation factor GreA [Vibrio vulnificus CMCP6]
 gi|319930743|gb|ADV85607.1| transcription elongation factor GreA [Vibrio vulnificus MO6-24/O]
          Length = 157

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 115/157 (73%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T++G +++ ++   R  + RP I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTARG-EQLLRKELERLLKRRPLITEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID+S M  + ++ FGATV+L++ ++ ++K YQIVGD EAD++SG +
Sbjct: 60  QIRDIEYKLSVAQVIDVSKMENNGKVIFGATVTLIDCDTEEEKTYQIVGDDEADIKSGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S++SPIAR LIGK  GD ++++ PGG K +EI  V +
Sbjct: 120 SVNSPIARGLIGKMEGDEVAISTPGGMKDFEIDSVEY 156


>gi|325274307|ref|ZP_08140416.1| transcription elongation factor GreB [Pseudomonas sp. TJI-51]
 gi|324100565|gb|EGB98302.1| transcription elongation factor GreB [Pseudomonas sp. TJI-51]
          Length = 157

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +TS+G   +++EL    +  RP I + ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MSTNIITSEGHAALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +V+  S     ++ FGA V +   +      ++IVG  E   ++  +S
Sbjct: 61  RVRYLRKRLEDVKVVAYSPEQEGKVFFGAWVEIENDDGE-TMKFRIVGYDEIYGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ K+ GD + V+ P GE T+ +  + +
Sbjct: 120 IDSPMARALLKKQEGDEVLVHTPTGEATWYVNSISY 155


>gi|328474225|gb|EGF45030.1| transcription elongation factor GreA [Vibrio parahaemolyticus
           10329]
          Length = 152

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/145 (43%), Positives = 103/145 (71%), Gaps = 2/145 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G   ++ EL    +  RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTLRGEQMLRTELERLLK-LRPQISEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M    ++ FG+TV+L++ ++ ++K YQIVGD EAD+++G +
Sbjct: 60  QIRDIEYKLSVAQVIDVTKMENTGKVIFGSTVTLIDVDTDEEKTYQIVGDDEADIKAGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPG 145
           S+SSPIAR LIGK  GD +++  P 
Sbjct: 120 SVSSPIARGLIGKMEGDEVAIQTPA 144


>gi|331091969|ref|ZP_08340801.1| hypothetical protein HMPREF9477_01444 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330402868|gb|EGG82435.1| hypothetical protein HMPREF9477_01444 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 160

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK   +T  G  K+++EL   +  +R  +   I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MADKKTILTYAGLKKLEEELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ ELE I+  AEV+    +  D+I+ G TV++ +    ++  ++IVG  EA+   G 
Sbjct: 61  EARIEELEKILKNAEVVVEDEVDLDKISIGCTVTVYDNEFEEEIEFKIVGSTEANSLEGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +ALIG+++ D++ V    G   Y++L++ 
Sbjct: 121 ISNESPVGKALIGRKVDDVVEVETQAGVMEYKVLKIE 157


>gi|148548662|ref|YP_001268764.1| transcription elongation factor GreB [Pseudomonas putida F1]
 gi|148512720|gb|ABQ79580.1| transcription elongation factor GreB [Pseudomonas putida F1]
          Length = 162

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T++G + +++EL    +  RP I + ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MSTNIITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +V+  S     R+ FGA V +   +      ++IVG  E   ++  +S
Sbjct: 61  RVRYLRKRLEDVKVVAYSPEQEGRVFFGAWVEIENDDGE-TMKFRIVGYDEIYGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE GD + V+ P GE T+ +  + +
Sbjct: 120 IDSPMARALLKKEEGDEVVVHTPTGEATWYVSSIRY 155


>gi|229524693|ref|ZP_04414098.1| transcription elongation factor GreB [Vibrio cholerae bv. albensis
           VL426]
 gi|229338274|gb|EEO03291.1| transcription elongation factor GreB [Vibrio cholerae bv. albensis
           VL426]
          Length = 161

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G++K++QEL +  +E+RP I + +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L  ++   +++D S     ++ FGA V +  +    K  ++IVG +E        +
Sbjct: 61  RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIENEAGDVK-KFRIVGPEEIYGDAKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ K++ +   V  P G K + I  + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVQTPTGIKEWFINSIEY 156


>gi|156972942|ref|YP_001443849.1| transcription elongation factor [Vibrio harveyi ATCC BAA-1116]
 gi|156524536|gb|ABU69622.1| hypothetical protein VIBHAR_00620 [Vibrio harveyi ATCC BAA-1116]
          Length = 161

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+++++ EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTNLITREGYNRLKTELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   + + +V+D S     ++ FGA V +  +    K  ++IVG  E      G +
Sbjct: 61  RVRYLRKRLEQVKVVDYSPKQEGKVFFGAWVEIENEAGDVKN-FRIVGPDEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+ D  +V  P G K + I  + +
Sbjct: 120 SIDSPMARALLKKEVDDEFAVRTPEGYKEWFINSIRY 156


>gi|299535716|ref|ZP_07049037.1| transcription elongation factor GreA [Lysinibacillus fusiformis
           ZC1]
 gi|298728916|gb|EFI69470.1| transcription elongation factor GreA [Lysinibacillus fusiformis
           ZC1]
          Length = 162

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 94/158 (59%), Gaps = 4/158 (2%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T++G  K+++EL   + E R  I++ I  AR +GDLSENAEY +AKE Q   EGR
Sbjct: 5   KQYPMTAEGKRKLEEELVKLETETRKEIVERIKIARDFGDLSENAEYDSAKEEQAFLEGR 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVE----KNSGDKKNYQIVGDQEADVQSG 118
           ++ L+++I  A +I         ++ G TV+ VE    K S D+++Y IVG  EAD    
Sbjct: 65  ISTLKSMIRNAVIISEDETDNSVVSLGKTVTFVEIINGKPSTDEESYTIVGSAEADPMEF 124

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA+ L+G+  G+ + V  PGGE   +IL + 
Sbjct: 125 RISNESPIAKGLLGRAEGEEVVVQTPGGEMKVKILSIK 162


>gi|323497027|ref|ZP_08102050.1| transcription elongation factor [Vibrio sinaloensis DSM 21326]
 gi|323317871|gb|EGA70859.1| transcription elongation factor [Vibrio sinaloensis DSM 21326]
          Length = 160

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 88/157 (56%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +GFD++++EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTNLITREGFDRLKKELDFLWKEERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   + + +V+D +     ++ FGA V +  +    K  ++IVG  E      G +
Sbjct: 61  RVRYLRKRLEQVKVVDYAPQQEGKVFFGAWVEIENEAGEVKS-FRIVGPDEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+ D  SV  P G K + + ++ +
Sbjct: 120 SIDSPMARALLKKEVDDEFSVKTPEGYKEWFVNRISY 156


>gi|288803422|ref|ZP_06408854.1| transcription elongation factor GreA [Prevotella melaninogenica
           D18]
 gi|302345970|ref|YP_003814323.1| transcription elongation factor GreA [Prevotella melaninogenica
           ATCC 25845]
 gi|288334032|gb|EFC72475.1| transcription elongation factor GreA [Prevotella melaninogenica
           D18]
 gi|302149498|gb|ADK95760.1| transcription elongation factor GreA [Prevotella melaninogenica
           ATCC 25845]
          Length = 156

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 94/150 (62%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+  +L++ +  ERP+   AI+EA   GDLSEN+EY AAKE Q   E R+AE
Sbjct: 3   YMSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAE 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  + +A+++D+S +S D +   +TV +    +  K  Y IV + EA+++   +SI +P
Sbjct: 63  LKMTVAQAKIVDVSRLSTDAVQIMSTVEMTNVKTNAKMKYTIVSETEANLKQNKISIKTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+ K++GD + +  P G  T  I ++
Sbjct: 123 IAQGLLNKKVGDEVEITIPRGTITLRIDKI 152


>gi|259503587|ref|ZP_05746489.1| transcription elongation factor GreA [Lactobacillus antri DSM
           16041]
 gi|259168460|gb|EEW52955.1| transcription elongation factor GreA [Lactobacillus antri DSM
           16041]
          Length = 158

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 99/157 (63%), Gaps = 2/157 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T +G  K++ EL   + + RP +IK I  AR+YGDLSEN+EY++AK+ Q +
Sbjct: 1   MAEEKTFPMTLEGKQKLEDELEEYKMKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAM 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+A++EN++  AE+ID   +  D ++ G +V+  E    + + Y IVG+ E+D  +G
Sbjct: 61  VESRIAQIENMLQYAEIIDNEDVDKDEVSMGRSVTFKELPDEEPETYSIVGESESDPLNG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+A+ L+G ++G+ + +  P G    +IL V
Sbjct: 121 KISNESPMAKGLLGHKIGEEVEIEIPNGTMKVKILDV 157


>gi|153002701|ref|YP_001368382.1| transcription elongation factor GreB [Shewanella baltica OS185]
 gi|160877437|ref|YP_001556753.1| transcription elongation factor GreB [Shewanella baltica OS195]
 gi|217975274|ref|YP_002360025.1| transcription elongation factor GreB [Shewanella baltica OS223]
 gi|304412250|ref|ZP_07393858.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
 gi|307306034|ref|ZP_07585779.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
 gi|151367319|gb|ABS10319.1| transcription elongation factor GreB [Shewanella baltica OS185]
 gi|160862959|gb|ABX51493.1| transcription elongation factor GreB [Shewanella baltica OS195]
 gi|217500409|gb|ACK48602.1| transcription elongation factor GreB [Shewanella baltica OS223]
 gi|304349285|gb|EFM13695.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
 gi|306910907|gb|EFN41334.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
 gi|315269639|gb|ADT96492.1| transcription elongation factor GreB [Shewanella baltica OS678]
          Length = 167

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+  + +EL++  +E RP+I   + EA A GD SENA+Y   K L    +G
Sbjct: 1   MKAHLITRQGWQTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     +I FGA   L  +  GD+  Y+IVG  E D + G ++
Sbjct: 61  RVRYLVKRLEELKIVDYSPQQEGKIFFGAWFELENEA-GDRVRYRIVGKDELDTKLGYIT 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALIGK++ D + V  P G K + I Q+ +
Sbjct: 120 IDSPMARALIGKQVDDEVVVQTPSGPKEWYINQIRY 155


>gi|291460291|ref|ZP_06599681.1| transcription elongation factor GreA [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291417046|gb|EFE90765.1| transcription elongation factor GreA [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 162

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/158 (36%), Positives = 81/158 (51%), Gaps = 4/158 (2%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T  G +K + EL   +   R  I   I EAR  GDLSENAEY AAK+ Q  
Sbjct: 1   MAEGKKNLLTRAGLNKYEAELHDLKVNRRQEIAGKIKEAREQGDLSENAEYDAAKDEQRE 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ +LE ++  AEV+D +      I  G  V L++K   ++  Y IVG  EA+   G
Sbjct: 61  IEERIVQLELLLKNAEVVDDTEE--GSINIGCHVKLLDKEFDEEVEYTIVGSTEANSLQG 118

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+ +AL+    GD + V    G   + +L V 
Sbjct: 119 KISNESPVGKALLHHREGDTVEVETQNGVLQFTVLSVE 156


>gi|126172390|ref|YP_001048539.1| transcription elongation factor GreB [Shewanella baltica OS155]
 gi|125995595|gb|ABN59670.1| transcription elongation factor GreB [Shewanella baltica OS155]
          Length = 169

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+  + +EL++  +E RP+I   + EA A GD SENA+Y   K L    +G
Sbjct: 3   MKAHLITRQGWQTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDG 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     +I FGA   L  +  GD+  Y+IVG  E D + G ++
Sbjct: 63  RVRYLVKRLEELKIVDYSPQQEGKIFFGAWFELENEA-GDRVRYRIVGKDELDTKLGYIT 121

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALIGK++ D + V  P G K + I Q+ +
Sbjct: 122 IDSPMARALIGKQVDDEVVVQTPSGPKEWYINQIRY 157


>gi|332185724|ref|ZP_08387471.1| transcription elongation factor GreA domain protein [Sphingomonas
           sp. S17]
 gi|332014082|gb|EGI56140.1| transcription elongation factor GreA domain protein [Sphingomonas
           sp. S17]
          Length = 158

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 72/156 (46%), Positives = 114/156 (73%), Gaps = 2/156 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K+P+  +G+DK+ Q+LR  + EERP+I+ AI EARA+GDLSENAEY AAKE Q   E  
Sbjct: 5   EKMPMLQEGYDKLTQDLRRLK-EERPQIVDAIEEARAHGDLSENAEYHAAKERQGQIEAS 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +A++E+ ++RA++ID   +SGD+I FGATV+L++++      YQIVG  EAD ++G +S 
Sbjct: 64  IADIEDKLSRAQIIDPKDLSGDKIVFGATVTLLDEDDKPV-KYQIVGQTEADAKTGRISY 122

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SP+ RALIG+++ + + V  P G++ Y + ++ +I
Sbjct: 123 NSPLGRALIGRKVEEEVEVTVPSGDRYYLVSKIEFI 158


>gi|281425411|ref|ZP_06256324.1| transcription elongation factor GreA [Prevotella oris F0302]
 gi|299141561|ref|ZP_07034697.1| transcription elongation factor GreA [Prevotella oris C735]
 gi|281400404|gb|EFB31235.1| transcription elongation factor GreA [Prevotella oris F0302]
 gi|298576897|gb|EFI48767.1| transcription elongation factor GreA [Prevotella oris C735]
          Length = 156

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 89/150 (59%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+D +  EL+  +  ERP+   AI+EAR  GDLSEN+EY AAKE Q   E ++ +
Sbjct: 3   YMSQEGYDNLVAELQRLESIERPKASAAIAEARDKGDLSENSEYDAAKEAQAHLEDKINK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           ++  I  A+++D+S +S D +   + V +    +  K  Y IV + EA+++ G +SI +P
Sbjct: 63  MKVSIAEAKIVDLSRLSTDAVQIMSKVEMTNMGTKAKMVYTIVSESEANLKQGKISIKTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+  + G+I+ V  P G     I ++
Sbjct: 123 IAQGLLNHKEGEIVEVKIPRGTIKLRIDKI 152


>gi|260771823|ref|ZP_05880741.1| transcription elongation factor GreA [Vibrio metschnikovii CIP
           69.14]
 gi|260613115|gb|EEX38316.1| transcription elongation factor GreA [Vibrio metschnikovii CIP
           69.14]
          Length = 157

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 68/158 (43%), Positives = 115/158 (72%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G +K+ ++   R  + RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTVRG-EKLLRDELERLLKLRPKITQAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID     +  ++ FG+TVSL++ ++ ++K YQIVGD EA++++G +
Sbjct: 60  QIRDIEYKLSVAQVIDIAKIENTGKVIFGSTVSLIDVDTDEEKRYQIVGDDEAEIKAGRI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR LIGK  GD ++++ PGG+K +EI +V ++
Sbjct: 120 SVSSPIARGLIGKMEGDEVTISTPGGDKVFEIDKVDYL 157


>gi|104781028|ref|YP_607526.1| transcription elongation factor GreB [Pseudomonas entomophila L48]
 gi|95110015|emb|CAK14720.1| transcription elongation factor and transcript cleavage
           [Pseudomonas entomophila L48]
          Length = 157

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T++G + +++EL    +  RP I + ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MSTNIITTEGHEALKKELDHLWRVYRPEITQKVTWAASLGDRSENADYQYNKKLLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +V+  S     ++ FGA V +     GD+  ++IVG  E   ++  +S
Sbjct: 61  RVRYLRKRLEDVKVVSYSPQQEGKVFFGAWVEIENDE-GDQLKFRIVGYDEIHGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE GD + V+ P GE T+ +  + +
Sbjct: 120 IDSPMARALLKKEEGDEVVVHTPTGEATWYVNTISY 155


>gi|73748580|ref|YP_307819.1| transcription elongation factor GreA [Dehalococcoides sp. CBDB1]
 gi|73660296|emb|CAI82903.1| transcription elongation factor GreA [Dehalococcoides sp. CBDB1]
          Length = 170

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 86/155 (55%), Gaps = 1/155 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KIP+T+ G+ K++ EL   +  +R  +I+ +  A    D+ ENA Y AAKE +   EGR
Sbjct: 16  EKIPMTASGYKKLEDELGILK-VKRIAVIEEMRLAALDKDMRENAPYHAAKEQRGQIEGR 74

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E+ +  AEV + +  +  ++  G TV L +  +G++  Y +V  +E +   G +S 
Sbjct: 75  IKEIEHELKHAEVSEYTDNNTSKVNMGNTVKLRDLKNGEQCIYTLVSPKEIEPLKGRISA 134

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SSPI +AL  +  GD I +  P G   Y I  + +
Sbjct: 135 SSPIGKALFNRSKGDNIEIEVPSGTLQYVIEDISF 169


>gi|313499599|gb|ADR60965.1| GreB [Pseudomonas putida BIRD-1]
          Length = 162

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T++G + +++EL    +  RP I + ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MSTNIITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +V+  S     ++ FGA V +          ++IVG  E   ++  +S
Sbjct: 61  RVRYLRKRLEDVKVVAYSPEQEGKVFFGAWVEIENDEGE-TMKFRIVGYDEIYGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE GD + V+ P GE T+ +  + +
Sbjct: 120 IDSPMARALLKKEEGDEVVVHTPTGEATWYVSSIRY 155


>gi|301628310|ref|XP_002943300.1| PREDICTED: transcription elongation factor greB-like [Xenopus
           (Silurana) tropicalis]
          Length = 154

 Score =  123 bits (309), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 81/152 (53%), Gaps = 2/152 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G + ++ EL    + ERP+++  +S A   GD SEN +Y   K+     + R+  L
Sbjct: 1   MTPAGLESLRSELNHLSRSERPKVVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRIRFL 60

Query: 67  ENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
              I  A+V+D +   G +R+ FGATV+   +    ++   +VG  EAD++   +S  SP
Sbjct: 61  TKRIESAKVVDPAEQQGLERVFFGATVTYANQRDE-ERTVTLVGVDEADMEQSKISWRSP 119

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +ARAL    +GD + +  P G +  E++ + +
Sbjct: 120 VARALFKAGIGDEVLLRTPAGTERLEVIAIAY 151


>gi|320353912|ref|YP_004195251.1| transcription elongation factor GreA [Desulfobulbus propionicus DSM
           2032]
 gi|320122414|gb|ADW17960.1| transcription elongation factor GreA [Desulfobulbus propionicus DSM
           2032]
          Length = 161

 Score =  123 bits (309), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 72/156 (46%), Positives = 111/156 (71%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV +IP++  G  ++++EL   ++ ERP I+KAI  ARA+GDLSENAEY AAKE Q+L E
Sbjct: 1   MVVRIPMSLTGNRQLREELERLERVERPEIVKAIEVARAHGDLSENAEYHAAKERQSLVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL++ + RAEVID S +S +R  FG  V+L++  +  +  YQ++G +EADV+ G +
Sbjct: 61  GRILELKDKLGRAEVIDCSKVSTNRAVFGTVVTLMDLTTEVEVTYQLLGPEEADVKKGSI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S+ SP+ +AL+GKE+GD +    PGG + +E++ + 
Sbjct: 121 SVLSPLGQALLGKEIGDEVVTKTPGGMREFEVIDIT 156


>gi|149177265|ref|ZP_01855871.1| transcription elongation factor greA [Planctomyces maris DSM 8797]
 gi|148843979|gb|EDL58336.1| transcription elongation factor greA [Planctomyces maris DSM 8797]
          Length = 158

 Score =  123 bits (309), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 93/157 (59%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +D+ P+T +G+DK+++E+R  + +  P I + I++ARA GDL EN EY A +E Q + + 
Sbjct: 1   MDRHPITQEGYDKLREEIRHLESDVMPEIAEKIADARAEGDLKENTEYHAQREAQGMTQA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD--VQSGL 119
           ++ +L++ +    + D STM    + FG+ V++   + G  + Y+ VG  E D   +   
Sbjct: 61  KINQLKSKLANCYIADKSTMPKGVVTFGSIVTVKNLDDGLDEKYEFVGPGEEDYLGEVMK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +  SSP+A  L+ K++GD + V  P G   +E++Q+ 
Sbjct: 121 ILTSSPLAEGLLNKKVGDKVEVEVPSGTLKFEVIQIE 157


>gi|18034645|gb|AAL57611.1|AF456234_1 transcription cleavage factor GreA [Thermus aquaticus]
          Length = 156

 Score =  123 bits (309), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   + +T +GF ++Q+EL   +  +R  I     +A   GDL ENA Y  A+     NE
Sbjct: 1   MKKPVYLTPEGFRRLQEELNHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+A+LE+++ RA V++ +         G  V L E  SG++ +  IVG  EAD+ SG +
Sbjct: 61  ARIAQLEDLLARAVVVEGNGSYDQVA-LGCQVEL-ETESGERLSLAIVGSHEADIFSGKI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SP+ +AL+GK++GD++ +    G + Y IL++ 
Sbjct: 119 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEIK 154


>gi|320450471|ref|YP_004202567.1| transcription cleavage factor GreA [Thermus scotoductus SA-01]
 gi|320150640|gb|ADW22018.1| transcription cleavage factor GreA [Thermus scotoductus SA-01]
          Length = 156

 Score =  123 bits (309), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   + +T +GF ++Q+EL   +  +R  I     +A   GDL ENA Y  A+     NE
Sbjct: 1   MKKPVYLTPEGFRRLQEELHHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+A+LE+++ RA V++ +         G  V L E  SG++ +  IVG  EAD+ SG +
Sbjct: 61  ARIAQLEDLLARAVVVEGNGSYDQVA-LGCQVEL-ETESGERLSLAIVGSHEADIFSGKI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SP+ +AL+GK++GD++ +    G + Y IL++ 
Sbjct: 119 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEIK 154


>gi|225389819|ref|ZP_03759543.1| hypothetical protein CLOSTASPAR_03567 [Clostridium asparagiforme
           DSM 15981]
 gi|225044129|gb|EEG54375.1| hypothetical protein CLOSTASPAR_03567 [Clostridium asparagiforme
           DSM 15981]
          Length = 160

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK   +T  G  + + EL+  +  +R  + + I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MADKKHILTYAGLKQYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ ELE ++  AEV+    +  D+I  G  V L++    ++  Y IVG  EA+     
Sbjct: 61  ELRIEELEKLLKNAEVVVEDEIDTDKINIGCKVKLLDVEFDEEMEYFIVGSTEANSLQNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  AL+GK +G+ + V    G   Y++L + 
Sbjct: 121 ISNESPVGHALLGKGVGETVDVETQAGTIQYKVLNIQ 157


>gi|325288417|ref|YP_004264598.1| transcription elongation factor GreA [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324963818|gb|ADY54597.1| transcription elongation factor GreA [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 156

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T  G  K++ EL   +   R  + + I +A  +GD+SEN+EY  AK  Q   
Sbjct: 1   MPEKEVILTLDGLKKLEDELENLKTHRRKEVAERIKQAIEFGDISENSEYDDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE I+  A VID      D ++ G+TV L +   G+ + Y IVG  EAD     
Sbjct: 61  EGRIITLEKILRNARVID-DNEERDFVSLGSTVLLKDIEFGETEEYTIVGSAEADPAGNK 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +A++G+  G ++ VN P G   YEI+ + 
Sbjct: 120 ISNESPVGKAVLGQAKGSVVEVNVPAGILRYEIMDIR 156


>gi|291541638|emb|CBL14748.1| transcription elongation factor GreA [Ruminococcus bromii L2-63]
          Length = 160

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/158 (34%), Positives = 94/158 (59%), Gaps = 3/158 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  K   +T++G   +++EL   +  +R  I + I  AR+YGDLSEN+EY  AK  Q + 
Sbjct: 1   MAAKPTMLTAEGLKNLEEELAELKNVKRKEIAEKIKVARSYGDLSENSEYDDAKNEQAIM 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV--GDQEADVQS 117
           E R+A +E+I+  A++ID S  S D++   + V++    +  +  Y+IV  G  E +   
Sbjct: 61  EARIATIESILKTAQIIDESETSNDKVHLTSVVTIEMVGTDRQMTYKIVGSGSNETNPAQ 120

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           G +S  SP+ +AL+ + +GD++ V  PGG K ++IL++
Sbjct: 121 GKISDESPVGKALMDRCVGDVVEVETPGGVKAFKILEI 158


>gi|218295530|ref|ZP_03496343.1| transcription elongation factor GreA [Thermus aquaticus Y51MC23]
 gi|218244162|gb|EED10688.1| transcription elongation factor GreA [Thermus aquaticus Y51MC23]
          Length = 156

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   + +T +GF ++Q+EL   +  +R  I     +A   GDL ENA Y  A+     NE
Sbjct: 1   MKKPVYLTPEGFRRLQEELNHLKTTKRQEISADFEQALEEGDLRENAGYDEARRAMWQNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+A+LE+++ RA +++ +         G  V L E  SG++ +  IVG  EAD+ SG +
Sbjct: 61  ARIAQLEDLLARAVIVEGNGSYDQVA-LGCQVEL-ETESGERLSLAIVGSHEADIFSGKI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SP+ +AL+GK++GD++ +    G + Y IL++ 
Sbjct: 119 SDESPLGQALLGKKVGDVVEIRGKKGAQVYTILEIK 154


>gi|290969240|ref|ZP_06560765.1| transcription elongation factor GreA [Megasphaera genomosp. type_1
           str. 28L]
 gi|290780746|gb|EFD93349.1| transcription elongation factor GreA [Megasphaera genomosp. type_1
           str. 28L]
          Length = 161

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 4/157 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +  +T +G  K++ EL   +   R  + K I EA A GDLSEN+EY  AK  Q   E
Sbjct: 1   MNTETLITQEGLQKLKDELNELKSVRRITVSKRIQEAIALGDLSENSEYDDAKNEQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+AELE  I  A++I  +  S  ++  G+ V L +  +G++ +Y +VG  EAD  +  +
Sbjct: 61  GRIAELEGKIRTAKIIQAADDSAAKVRLGSHVVLEDVETGERFDYTVVGTAEADPFNNKI 120

Query: 121 SISSPIARALIGKELGD----IISVNAPGGEKTYEIL 153
           S  SP+ +A++G+ +      +++V AP GE  Y IL
Sbjct: 121 SNESPVGKAILGQLISQQEPVVVTVKAPAGELQYRIL 157


>gi|327485185|gb|AEA79592.1| Transcription elongation factor GreB [Vibrio cholerae LMA3894-4]
          Length = 169

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G++K++QEL +  +E+RP I + +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L  ++   +++D S     ++ FGA V +  +    K  ++IVG +E        +
Sbjct: 61  RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIENEAGDVK-KFRIVGPEEIYGDAKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ K++ +   V+ P G K + I  + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPTGIKEWFINSIEY 156


>gi|254480189|ref|ZP_05093437.1| transcription elongation factor GreB [marine gamma proteobacterium
           HTCC2148]
 gi|214039751|gb|EEB80410.1| transcription elongation factor GreB [marine gamma proteobacterium
           HTCC2148]
          Length = 165

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G   ++ EL    + ERP I   + EA   GD SEN +Y   K      + R+  
Sbjct: 14  YITPEGEKALRDELHQLWKVERPVITNTVHEAAKNGDRSENGDYIYGKRRLREIDSRVRF 73

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +   EV++ S     +I FGA V+L E   G +  ++IVG  E ++++G +S+ SP
Sbjct: 74  LNKRLDELEVVERSPDDTSKIRFGAWVTL-ETEDGQEHRWRIVGPDEFELKTGKLSMDSP 132

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +AR+++GK L D + V +P GE+ Y ++ + +
Sbjct: 133 MARSMLGKGLDDEVVVQSPSGEQVYYVVGIEY 164


>gi|322514598|ref|ZP_08067631.1| transcription elongation factor GreB [Actinobacillus ureae ATCC
           25976]
 gi|322119537|gb|EFX91624.1| transcription elongation factor GreB [Actinobacillus ureae ATCC
           25976]
          Length = 162

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 84/157 (53%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G+  + QEL++  ++ERP++ +A+SEA A  D SENAEY   K      +
Sbjct: 1   MAKSNYITRSGWQTLDQELKFLWKDERPKVTQAVSEAAALDDRSENAEYIYGKRRLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +   +++D       ++ F A V L  +    K+ Y+IVG  E D     +
Sbjct: 61  RRVRFLSKRLEVLQIVDYHPKQEGKVFFRAWVELENEQGETKQ-YRIVGCDEFDPAKNWI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+AR+LIGKE+ D I V+ P G+    I ++ +
Sbjct: 120 SIDSPVARSLIGKEVDDEIKVDTPLGKSLLYINKIWY 156


>gi|167032925|ref|YP_001668156.1| transcription elongation factor GreB [Pseudomonas putida GB-1]
 gi|166859413|gb|ABY97820.1| transcription elongation factor GreB [Pseudomonas putida GB-1]
          Length = 156

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T++G + +++EL    +  RP I + ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MSTNIITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +V+  S     ++ FGA V +          ++IVG  E   ++  +S
Sbjct: 61  RVRYLRKRLEDVKVVAYSPQQEGKVFFGAWVEIENDEGE-TMKFRIVGYDEIYGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE GD + V+ P GE T+ +  + +
Sbjct: 120 IDSPMARALLKKEEGDEVVVHTPTGEATWYVNSISY 155


>gi|26989039|ref|NP_744464.1| transcription elongation factor GreB [Pseudomonas putida KT2440]
 gi|37999626|sp|Q88KH5|GREB_PSEPK RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|24983864|gb|AAN67928.1|AE016425_5 transcription elongation factor GreB [Pseudomonas putida KT2440]
          Length = 162

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 83/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T++G + +++EL    +  RP I + ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MSTNIITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +V+  S     ++ FGA V +          ++IVG  E   ++  +S
Sbjct: 61  RVRYLRKRLEDVKVVAYSPEQEGKVFFGAWVEIENDEGE-TMKFRIVGYDEIYGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE GD + V+ P GE T+ +  + +
Sbjct: 120 IDSPMARALLKKEEGDEVVVHTPTGEATWYVSSIRY 155


>gi|295102173|emb|CBK99718.1| transcription elongation factor GreA [Faecalibacterium prausnitzii
           L2-6]
          Length = 161

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 90/158 (56%), Gaps = 1/158 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +I +++ G   +Q+EL + +   R  + + I EAR++GDLSEN+EY  AK  Q L E
Sbjct: 1   MAQEIKMSAAGLKAMQEELEYLKTVRRKELAEEIKEARSHGDLSENSEYDEAKNTQGLVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ ELE +I  A VID S +S + ++ G  V++  +   + + Y IVG  EAD  +G +
Sbjct: 61  NRITELEQMIKNAVVIDESELSVESVSVGTHVTIQMEGEDEVEEYDIVGRTEADPLNGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           S  SP+  AL+ K +GD   V  P G    Y++L +  
Sbjct: 121 SDESPVGHALLEKAVGDTAEVLLPTGLTVNYKVLGITH 158


>gi|262376606|ref|ZP_06069834.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145]
 gi|262308316|gb|EEY89451.1| transcription elongation factor GreB [Acinetobacter lwoffii SH145]
          Length = 164

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 81/156 (51%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G DK+  EL+    EERP I K ++ A + GD SENA+YQ  K++    + 
Sbjct: 1   MKSNLITRAGHDKLVAELKNLWHEERPEITKKVNWAASLGDRSENADYQYNKQILRKIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   ++ID S     ++ FGA V +  +    K    +  D+  D     +S
Sbjct: 61  RVRYLGKRLEELKIIDFSPEQEGKVYFGAWVEIENEEGEQKTLRIVGVDEIYDHHPQHIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ISSP+ARAL+GK++ D   V  P G+K + I  + +
Sbjct: 121 ISSPMARALLGKQVDDEAEVLTPSGKKLWFINSIRY 156


>gi|262190726|ref|ZP_06048956.1| transcription elongation factor GreB [Vibrio cholerae CT 5369-93]
 gi|262033403|gb|EEY51911.1| transcription elongation factor GreB [Vibrio cholerae CT 5369-93]
          Length = 161

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G++K++QEL +  +E+RP I + +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L  ++   +++D S     ++ FGA V +  +    K  ++IVG +E        +
Sbjct: 61  RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIENEAGDVK-KFRIVGPEEIYGDAKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ K++ +   V  P G K + I  + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVQTPTGMKEWFINSIEY 156


>gi|225181739|ref|ZP_03735178.1| transcription elongation factor GreA [Dethiobacter alkaliphilus AHT
           1]
 gi|225167610|gb|EEG76422.1| transcription elongation factor GreA [Dethiobacter alkaliphilus AHT
           1]
          Length = 156

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 88/154 (57%), Gaps = 1/154 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             ++ +T  G +K+++EL + +  +R  +   I  A ++GD+SEN+EY+ AK  Q   EG
Sbjct: 3   SKEVILTQGGLEKLEKELDYLKSTKRREVADRIKTAISFGDISENSEYEDAKNEQAFIEG 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  LE ++   ++I+  T S      G+TV L +    +   Y IVG  EA+     +S
Sbjct: 63  RIITLEKMLRNVKLINEETDSETVS-VGSTVILKDLEFDEDFEYTIVGSAEANPAENKIS 121

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+ +A++GK+L D++ V+ P G   Y+I+++
Sbjct: 122 NESPVGKAILGKKLNDVVEVSVPAGILKYQIVKI 155


>gi|188990994|ref|YP_001903004.1| transcription elongation factor GreB [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732754|emb|CAP50948.1| greB [Xanthomonas campestris pv. campestris]
          Length = 168

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 82/151 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G  +++ EL    +  RP +++A++ A A GD SENAEY   K+     + R+  L
Sbjct: 15  ITPEGHARLKAELDELWRLRRPEVVRALAAAAAEGDRSENAEYTYRKKQLGEIDRRVRYL 74

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +    V+D +      + FGA + L + +SG+   Y+IVG  E D  SG +SI SP+
Sbjct: 75  SKRLEALRVVDTAPTDPQAVFFGAQIELEDADSGELLRYRIVGPDETDAGSGWISIDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARAL+ K + D      P G+ T+ ++ V +
Sbjct: 135 ARALLKKRVDDEFEAQLPSGKHTFVVVVVEY 165


>gi|312870533|ref|ZP_07730651.1| transcription elongation factor GreA [Lactobacillus oris
           PB013-T2-3]
 gi|311093930|gb|EFQ52256.1| transcription elongation factor GreA [Lactobacillus oris
           PB013-T2-3]
          Length = 158

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 99/157 (63%), Gaps = 2/157 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T +G  K++ EL   + + RP +IK I  AR+YGDLSEN+EY++AK+ Q +
Sbjct: 1   MAEEKTFPMTLEGKQKLEDELEEYKMKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAM 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+A++EN++  AE+ID   +  D ++ G +V+  E    + + Y IVG+ E+D  SG
Sbjct: 61  VESRIAQIENMLQYAEIIDNEDVDKDEVSMGRSVTFKELPDEEPETYSIVGESESDPLSG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+A+ L+G ++G+ + +  P G    +IL V
Sbjct: 121 KISNESPMAKGLLGHKIGEEVEIEIPSGTMKVKILDV 157


>gi|291295486|ref|YP_003506884.1| transcription elongation factor GreA [Meiothermus ruber DSM 1279]
 gi|290470445|gb|ADD27864.1| transcription elongation factor GreA [Meiothermus ruber DSM 1279]
          Length = 159

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 55/159 (34%), Positives = 97/159 (61%), Gaps = 3/159 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M DK  + +T++G  +++QEL + + E+  +I + +  A A GDL ENA Y  A+     
Sbjct: 1   MADKKPVYLTAEGKARLEQELAYLKTEKMQQIAEEMGRAIAEGDLRENAGYDEARRAMWQ 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           N  R+AELE+I++R ++++        +  G TV  +E  +G + +  +VG  EADV SG
Sbjct: 61  NNSRIAELEDILSRVQIVESGNGIPTEVQIGVTV-ALETATGQRMSVTMVGSHEADVFSG 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +S  SP+ +AL+GK++GD + V  P G +TY ++++++
Sbjct: 120 KISNESPLGQALMGKKVGDEVQVKGPKGSQTYVVVELVY 158


>gi|50085861|ref|YP_047371.1| transcription elongation factor and transcript cleavage
           [Acinetobacter sp. ADP1]
 gi|49531837|emb|CAG69549.1| transcription elongation factor and transcript cleavage
           [Acinetobacter sp. ADP1]
          Length = 157

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++  +T++G+ ++Q EL    ++ERP I K +S A + GD SENA+Y   K      + 
Sbjct: 1   MNRKLLTAEGYQRLQDELNDLVRKERPEITKIVSWAASLGDRSENADYIYNKRKLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L  +   A  ++ S     +  FGA V L          ++IVGD+E   +   +S
Sbjct: 61  RIRYLTKLFEVAHKVEYSPEQDGKAYFGAWVELENDEGEII-KFRIVGDEEIYGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SPIA+A +GK + D I V  P G+K + I Q+ +
Sbjct: 120 LQSPIAKACLGKSVDDEIQVQTPTGKKIWYICQINY 155


>gi|294138934|ref|YP_003554912.1| transcription elongation factor GreB [Shewanella violacea DSS12]
 gi|293325403|dbj|BAJ00134.1| transcription elongation factor GreB [Shewanella violacea DSS12]
          Length = 161

 Score =  123 bits (308), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  + +T KG+  + +EL++  +E RP I K + EA A GD SENA+Y   K L    +G
Sbjct: 1   MKALLITRKGWQALDKELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V L  +     + Y+IVG  E D + G ++
Sbjct: 61  RVRYLVKRVEELKIVDYSPQQEGKVFFGAWVELENEAGEVVQ-YRIVGKDELDTKLGYIT 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP++RALIGK++ D I V  P G K + + ++ +
Sbjct: 120 IDSPMSRALIGKQVDDEIVVQTPSGAKEWYVNKIQY 155


>gi|149189239|ref|ZP_01867526.1| transcription elongation factor GreB [Vibrio shilonii AK1]
 gi|148836993|gb|EDL53943.1| transcription elongation factor GreB [Vibrio shilonii AK1]
          Length = 161

 Score =  123 bits (308), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 82/157 (52%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++QE  +   E RP + K ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITREGYNKLKQEHDYLWNERRPEVTKIVTWAASLGDRSENADYTFNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +    ++D S     ++ FGA V +  +       ++IVG +E      G +
Sbjct: 61  RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIENEEGETMH-FRIVGPEEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ K++ D + V  P G+K + I  + +
Sbjct: 120 SIDSPMARALLKKQVDDEVVVKTPQGDKEWFINSITY 156


>gi|126653894|ref|ZP_01725741.1| transcription elongation factor GreA [Bacillus sp. B14905]
 gi|126589619|gb|EAZ83758.1| transcription elongation factor GreA [Bacillus sp. B14905]
          Length = 162

 Score =  123 bits (308), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 95/158 (60%), Gaps = 4/158 (2%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T++G  K+++EL   + E R  I++ I  AR +GDLSENAEY +AKE Q   EGR
Sbjct: 5   KQYPMTAEGKRKLEEELVKLETETRKEIVERIKIARDFGDLSENAEYDSAKEEQAFLEGR 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVE----KNSGDKKNYQIVGDQEADVQSG 118
           ++ L+++I  A +I         ++ G TV+ VE    K S D+++Y IVG  EAD    
Sbjct: 65  ISTLKSMIRNAVIISEDETDNSVVSLGKTVTFVEIINGKPSTDEESYTIVGSAEADPMEF 124

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA+ L+G+  G+ ++V  PGGE   +I+ + 
Sbjct: 125 RISNESPIAKGLLGRAEGEEVAVQTPGGEMKVKIVSIK 162


>gi|86146554|ref|ZP_01064876.1| transcription elongation factor GreB [Vibrio sp. MED222]
 gi|85835611|gb|EAQ53747.1| transcription elongation factor GreB [Vibrio sp. MED222]
          Length = 160

 Score =  123 bits (308), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++ E      E+RP I K ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITREGYNKLKAEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +    ++D S     ++ FGA V +   +   K  ++IVG +E      G +
Sbjct: 61  RVRFLRKFLPDVTIVDYSPQQEGKVFFGAWVEIENDDGEIK-KFRIVGPEEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE  D  +V  P G+K + I  + +
Sbjct: 120 SIDSPMARALLKKETDDEFTVTTPEGDKEWFINSIRY 156


>gi|330827878|ref|YP_004390830.1| transcription elongation factor GreB [Aeromonas veronii B565]
 gi|328803014|gb|AEB48213.1| transcription elongation factor GreB [Aeromonas veronii B565]
          Length = 157

 Score =  123 bits (308), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K+++EL +  ++ERP + + ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTKLITREGYNKLKEELDFLWRQERPEVTRKVAWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +    ++D +     ++ FGA V +  +    K  ++IVG  E   +   +S
Sbjct: 61  RVRYLRKCLEELGIVDYAPAQEGKVFFGAWVEVENEEGETK-RFRIVGYDEIFERKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+GD   V  P G+  + I ++ +
Sbjct: 120 IDSPMARALLKKEVGDEAIVRTPVGDVCWYINEISY 155


>gi|153802191|ref|ZP_01956777.1| transcription elongation factor GreB [Vibrio cholerae MZO-3]
 gi|124122265|gb|EAY41008.1| transcription elongation factor GreB [Vibrio cholerae MZO-3]
          Length = 161

 Score =  123 bits (308), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G++K++QEL +  +E+RP I + +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L  ++   +++D S     ++ FGA V +  +    K  ++IVG +E        +
Sbjct: 61  RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIENEAGDVK-KFRIVGPEEIYGDAKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ K++ +   V+ P G K + I  + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPTGIKEWFINSIEY 156


>gi|315127991|ref|YP_004069994.1| transcription elongation factor GreB [Pseudoalteromonas sp. SM9913]
 gi|315016505|gb|ADT69843.1| transcription elongation factor GreB [Pseudoalteromonas sp. SM9913]
          Length = 156

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 83/151 (54%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G DK+ +EL +  ++ RP I K ++ A + GD S+NA+Y+  K L    + R+  L
Sbjct: 6   ITREGLDKLNKELNYLWRDYRPEITKKVAWAASLGDRSDNADYKENKRLLRQIDSRIRFL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              I   +VID S     ++ FGA V +   +   K  ++IVG  E   ++  +SI SP+
Sbjct: 66  RKRIEAVKVIDYSPQQAGKVFFGAWVEIENDDGETKA-FRIVGPDEIYGRNDYISIDSPM 124

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ARA++ KE+ D   V  P G K + I ++ +
Sbjct: 125 ARAMLKKEVDDEFQVKTPVGVKEWFINKIEY 155


>gi|270158321|ref|ZP_06186978.1| transcription elongation factor GreB [Legionella longbeachae
           D-4968]
 gi|289163433|ref|YP_003453571.1| transcription elongation factor [Legionella longbeachae NSW150]
 gi|269990346|gb|EEZ96600.1| transcription elongation factor GreB [Legionella longbeachae
           D-4968]
 gi|288856606|emb|CBJ10413.1| transcription elongation factor [Legionella longbeachae NSW150]
          Length = 181

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 73/155 (47%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  GF  +Q ELR     ERP I+K +S A + GD SEN +Y   K+     + R+
Sbjct: 26  KNYMTPNGFAMLQAELRNLISNERPEIVKVVSWAASNGDRSENGDYIYGKKRLREIDRRI 85

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A+++D     G    F          +G+    +IVG  EAD+  G +S  
Sbjct: 86  RYLTKRLESAQIVDPKLQVGLTQVFFGATVQYINENGESHCVKIVGLDEADINEGKISWV 145

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+A+ L+  ++GD  ++     E    +  + +I
Sbjct: 146 SPLAKTLLKAKVGDHRTLRVGDKECHLTVTHISYI 180


>gi|303236653|ref|ZP_07323234.1| transcription elongation factor GreA [Prevotella disiens
           FB035-09AN]
 gi|302483157|gb|EFL46171.1| transcription elongation factor GreA [Prevotella disiens
           FB035-09AN]
          Length = 156

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 92/150 (61%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+D +  EL+  +  ERP+   AI+EA   GDLSEN+EY AAKE Q   E R+ E
Sbjct: 3   YMSQEGYDNLVAELQHLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQAHLETRINE 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           ++  I +A+++D+S +S + +   +TV +    +  K  Y IV + EA+++ G +SI +P
Sbjct: 63  MKMTIAQAKIVDMSRLSNEAVQIMSTVEMTNLGNNSKMKYTIVSESEANLKLGKISIKTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+ K++GD + +  P G+    + ++
Sbjct: 123 IAQGLLNKKVGDEVEIEIPRGKIKLRVDKI 152


>gi|260588922|ref|ZP_05854835.1| transcription elongation factor GreA [Blautia hansenii DSM 20583]
 gi|260540701|gb|EEX21270.1| transcription elongation factor GreA [Blautia hansenii DSM 20583]
          Length = 181

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 87/154 (56%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            K  +T  G  K+++EL   +  +R  + + I EAR  GDLSENAEY AAK+ Q   E R
Sbjct: 25  KKTLLTYAGLTKLEEELHDLKVNKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEAR 84

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E I+  AEV+    +  D+I+ G  V + +    ++  ++IVG  EA+   G +S 
Sbjct: 85  IEEIEKILKNAEVVVEDEVDLDKISVGCKVKVYDVEFEEEMEFKIVGSTEANSLEGKISN 144

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +ALIG   GD +SV  P G   Y+IL + 
Sbjct: 145 ESPVGKALIGARKGDTVSVEMPAGVMEYKILGIE 178


>gi|239626631|ref|ZP_04669662.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516777|gb|EEQ56643.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 160

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK   +T  G  + + EL+  +  +R  + + I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MADKKHILTYAGLKQYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ ELE ++  AEV+    +  D+I  G  V L++    ++  + IVG  EA+     
Sbjct: 61  ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKLLDVEYDEEMEFYIVGSTEANSLQNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ RALIGK +GD + V    G+  Y++L++ 
Sbjct: 121 ISNESPVGRALIGKVVGDCVEVETQAGDIQYKVLEIQ 157


>gi|116332834|ref|YP_794361.1| transcription elongation factor GreA [Lactobacillus brevis ATCC
           367]
 gi|116098181|gb|ABJ63330.1| transcription elongation factor GreA [Lactobacillus brevis ATCC
           367]
          Length = 160

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 86/152 (56%), Gaps = 3/152 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T+ G+  +Q ++   +  +RP  I  ++EARA+GDLSENAEY AAK      E ++ 
Sbjct: 8   NPITAAGYQDLQAKIAALEA-DRPEKIAILAEARAHGDLSENAEYSAAKRDLRHLESQLR 66

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+V+  S    D +  G  V++   +  ++  YQ+VG QEAD+ +G ++  S
Sbjct: 67  FYTKQLQYAKVVAPSNS--DVVDLGKWVTVTFLDDHEQATYQLVGTQEADLAAGKITRVS 124

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+ +AL+G   GD ++++AP      +I QV 
Sbjct: 125 PLGKALLGHHPGDTVTISAPHANYRVKINQVQ 156


>gi|157373311|ref|YP_001471911.1| transcription elongation factor GreB [Shewanella sediminis HAW-EB3]
 gi|157315685|gb|ABV34783.1| transcription elongation factor GreB [Shewanella sediminis HAW-EB3]
          Length = 163

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 87/156 (55%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  + +T KG+  + +EL++  +E RP I K + EA A GD SENA+Y   K L    + 
Sbjct: 1   MKAMLITRKGWQALDKELKYLWKEYRPEITKKVQEAAAQGDRSENADYTYNKRLLRQIDS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA + L  +     + Y+IVG  E D + G ++
Sbjct: 61  RVRYLVKRVEELQIVDYSPQQEGKVFFGAWIELENEAGEIVQ-YRIVGKDELDTKLGYIT 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALIGK++ D + V  P G K + I ++ +
Sbjct: 120 IDSPMARALIGKQVDDEVVVPTPLGPKEWYINKIQY 155


>gi|153825544|ref|ZP_01978211.1| transcription elongation factor GreB [Vibrio cholerae MZO-2]
 gi|254285910|ref|ZP_04960872.1| transcription elongation factor GreB [Vibrio cholerae AM-19226]
 gi|149740829|gb|EDM54920.1| transcription elongation factor GreB [Vibrio cholerae MZO-2]
 gi|150424092|gb|EDN16031.1| transcription elongation factor GreB [Vibrio cholerae AM-19226]
          Length = 160

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G++K++QEL +  +E+RP I + +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L  ++   +++D S     ++ FGA V +  +    K  ++IVG +E        +
Sbjct: 61  RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIENEAGDVK-KFRIVGPEEIYGDAKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ K++ +   V  P G K + I  + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVQTPTGMKEWFINSIEY 156


>gi|261392938|emb|CAX50523.1| transcription elongation factor GreB (transcript cleavage factor
           GreB) [Neisseria meningitidis 8013]
          Length = 163

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 70/155 (45%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T   +  ++ EL     +ERP I++ ++ A   GD SEN +Y   K      + R+
Sbjct: 6   KNYITPARWQALKDELYQLVNKERPEIVQIVNWAAGNGDRSENGDYLYGKRRMREIDRRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A V+D          F      + +  G ++  +IVG  E D     +S  
Sbjct: 66  RFLTKRLEAAVVVDPELREATDQVFFGATVGLLRGDGREQTVKIVGIDEIDTAQNKISWI 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+AR LI    GD + +N P G +  EIL V +I
Sbjct: 126 SPLARCLIKAREGDEVVLNTPEGREEIEILSVEYI 160


>gi|300907452|ref|ZP_07125097.1| transcription elongation factor GreB [Escherichia coli MS 84-1]
 gi|300400790|gb|EFJ84328.1| transcription elongation factor GreB [Escherichia coli MS 84-1]
          Length = 162

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 87/151 (57%), Gaps = 1/151 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 13  MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 72

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 73  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFDRKDYIS 131

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEI 152
           I SP+ARAL+ KE+GD+  VN P GE ++ +
Sbjct: 132 IDSPMARALLKKEVGDLAVVNTPAGEASWYV 162


>gi|291520199|emb|CBK75420.1| transcription elongation factor GreA [Butyrivibrio fibrisolvens
           16/4]
          Length = 159

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/153 (36%), Positives = 88/153 (57%), Gaps = 1/153 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T++G   ++ EL   +  +R  + + I EAR  GDLSENAEY AAK+ Q   E 
Sbjct: 3   AKKNLLTAEGLRVLEDELEDLKVNKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDIEA 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ E+E I+  AEV+     + + I  G TV+L++    ++  Y+IVG  EA+   G +S
Sbjct: 63  RIEEIEKILKNAEVVTDEHDTKN-INIGWTVTLLDVEFDEEVEYKIVGSTEANSLKGKIS 121

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
             SP+ +A++G + GD ++V    GE  Y+IL 
Sbjct: 122 NESPVGKAILGHKKGDTVTVETEAGEFQYKILA 154


>gi|294013274|ref|YP_003546734.1| transcription elongation factor GreB [Sphingobium japonicum UT26S]
 gi|292676604|dbj|BAI98122.1| transcription elongation factor GreB [Sphingobium japonicum UT26S]
          Length = 161

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 87/154 (56%), Gaps = 2/154 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T +GF K++ E       ERP+I++ +S A   GD SEN +Y   ++     +G++ 
Sbjct: 7   NYITPEGFAKLRAEYDQLLGVERPKIVEVVSWAAGNGDRSENGDYLYGRKRMREIDGQLK 66

Query: 65  ELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            L   +  A+V+D        ++ FGATV++ +++   ++   +VG+ E +  +G +  S
Sbjct: 67  RLSRKMKDAKVVDPRQQPDKSKVYFGATVTIADEDDK-RRTVTLVGNDETEASAGRIGWS 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +PIARAL G  +GD+  V  P GEK YE++++ +
Sbjct: 126 TPIARALRGAAVGDLRRVMLPAGEKEYEVMEIRY 159


>gi|317049903|ref|YP_004117551.1| GreA/GreB family elongation factor [Pantoea sp. At-9b]
 gi|316951520|gb|ADU70995.1| GreA/GreB family elongation factor [Pantoea sp. At-9b]
          Length = 167

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 2/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++ E      E+RP I K +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTQLITREGYNKLRAEHDHLWNEKRPEITKIVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +   +++D +     ++ FGA V +  +    K  ++IVG  E   +    +
Sbjct: 61  RVRYLRKCLAELKIVDYAPQQEGKVFFGAWVEVENEQGEVK-RFRIVGPDEIYGEVKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI SP+ARALI KE+ D ++VN P G+K + + ++ ++
Sbjct: 120 SIDSPMARALIKKEVDDEVTVNTPEGQKLWFVNRIEYV 157


>gi|326798984|ref|YP_004316803.1| transcription elongation factor GreA [Sphingobacterium sp. 21]
 gi|326549748|gb|ADZ78133.1| transcription elongation factor GreA [Sphingobacterium sp. 21]
          Length = 157

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/155 (40%), Positives = 99/155 (63%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D    + +G +K+++EL++ + E R  I +AI+EAR  GDLSENAEY AAKE Q L+E
Sbjct: 1   MADVTYYSKEGLEKLKEELQYLKTEGRAAIARAIAEARDKGDLSENAEYDAAKEAQGLHE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A+LE ++  A +ID S +   ++   + V L    +G    YQ+V + EAD++SG +
Sbjct: 61  AKIAKLEEVLANARLIDESKLDVTKVLALSIVKLKNTKNGAIMTYQLVSETEADLKSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S+ SPIA+ L+GK +GD   +  P G+   EIL++
Sbjct: 121 SVKSPIAQGLLGKSVGDKAEIEVPAGKIELEILEI 155


>gi|54307404|ref|YP_128424.1| transcription elongation factor GreB [Photobacterium profundum SS9]
 gi|46911824|emb|CAG18622.1| putative transcription elongation factor GreB [Photobacterium
           profundum SS9]
          Length = 156

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+DK+++EL +  +EERP I K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTNLITREGYDKLKKELDFLWREERPEITKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +V+D S     ++ FGA V +  + +  K  ++IVG  E   ++  +S
Sbjct: 61  RVRYLRKRLEIVKVVDYSPQQDGKVFFGAFVEIENEEAEQKA-FRIVGPDEIYGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+ +   V  P G+K + +  + +
Sbjct: 120 IDSPMARALLKKEVDEEFEVVTPQGKKLWFVNTIRY 155


>gi|114328469|ref|YP_745626.1| transcription elongation factor greB [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316643|gb|ABI62703.1| transcription elongation factor greB [Granulibacter bethesdensis
           CGDNIH1]
          Length = 169

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 2/154 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T  G  ++  EL+   +EERP+I++ +S A   GD SEN +Y   K+     + R+ 
Sbjct: 13  FYMTPVGHAQMVAELKQLMREERPKIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRVR 72

Query: 65  ELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            L   +  A VID +T    DRI FGATV+ +       +   IVG  EAD+  G +S+ 
Sbjct: 73  FLTKRLENAVVIDPATQPHKDRIYFGATVTYINAADETVQ-VTIVGADEADMALGRISLL 131

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+A+AL+G   GD ++V  P   +  +IL V +
Sbjct: 132 SPVAKALLGASKGDEVTVITPVKTEILDILDVDY 165


>gi|225572778|ref|ZP_03781533.1| hypothetical protein RUMHYD_00969 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039835|gb|EEG50081.1| hypothetical protein RUMHYD_00969 [Blautia hydrogenotrophica DSM
           10507]
          Length = 160

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 88/154 (57%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            K  +T  G   +++EL   +  +R  + + I EAR  GDLSENAEY AAK+ Q   E R
Sbjct: 4   KKNLLTYAGLKNLEEELHDLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E I+  AEV+    +  D+I+ G  V L +    ++  ++IVG  EA+   G +S 
Sbjct: 64  IEEIEKILKNAEVVVEDEVDLDKISVGCKVKLYDYEYEEEIEFKIVGSTEANSLQGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +ALIG ++ D++ V  P G   Y++L++ 
Sbjct: 124 ESPVGKALIGAKVDDVVKVEMPAGMVEYKVLEIQ 157


>gi|291551193|emb|CBL27455.1| transcription elongation factor GreA [Ruminococcus torques L2-14]
          Length = 160

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 2/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T  G   I+ EL   +  +R  +   I EAR  GDLSENAEY AAK+ Q  
Sbjct: 1   MAEAKKRLLTYAGLKAIEDELENLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRD 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ELE I+  AEV+    +  ++I  G  V + +    ++  ++IVG  EA+   G
Sbjct: 61  IEARIEELEAILKNAEVVVEDEVDLNKINVGCAVKVYDITFDEEMEFKIVGSTEANSLEG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+  ALIGK++ D++ V    G   Y++L + 
Sbjct: 121 KISNESPVGHALIGKKINDVVDVETQAGVIQYKVLDIK 158


>gi|261417196|ref|YP_003250879.1| GreA/GreB family elongation factor [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261373652|gb|ACX76397.1| GreA/GreB family elongation factor [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 169

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 89/154 (57%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  ++ +GF+K + E    +  ERP +I  +  A A GD SENA Y   +      + R+
Sbjct: 16  KHLISKEGFEKFKAEWEHLKYVERPAMINQVQAAAAEGDRSENAAYTYGRMRVREIDRRL 75

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            EL+ I+  A++++ +      I FGATV +++K +  +K Y IVGD+E D   G +S+ 
Sbjct: 76  RELDRILDGAQIVENAATKDGSIRFGATVKMIDKKTKREKIYSIVGDKEIDPLQGRISMK 135

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPI  AL GK+ GD + V AP G+  YEIL+V +
Sbjct: 136 SPIGEALQGKKAGDTVEVQAPRGKIVYEILEVNY 169


>gi|126664880|ref|ZP_01735864.1| Transcription elongation factor [Marinobacter sp. ELB17]
 gi|126631206|gb|EBA01820.1| Transcription elongation factor [Marinobacter sp. ELB17]
          Length = 153

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/142 (42%), Positives = 100/142 (70%), Gaps = 1/142 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G  +++ EL+  + E+RPR+I +I+ AR +GDL ENAEY AA++ Q+  EGR+ E+
Sbjct: 1   MTTLGEARLRAELQKLKSEDRPRVIASIATAREHGDLKENAEYHAARDQQSFIEGRIQEI 60

Query: 67  ENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E  +  A+VID++T+    ++ FG TV L+  ++  +  YQIVG+ EAD++ G +S+SSP
Sbjct: 61  EGKLGGAQVIDVTTIENTGKVIFGTTVHLLNTDTDKQVVYQIVGEDEADIKDGKISVSSP 120

Query: 126 IARALIGKELGDIISVNAPGGE 147
           IARAL+G+  G+++++  P G 
Sbjct: 121 IARALVGRRAGEVVAIRVPSGT 142


>gi|229525286|ref|ZP_04414691.1| transcription elongation factor GreA [Vibrio cholerae bv. albensis
           VL426]
 gi|229338867|gb|EEO03884.1| transcription elongation factor GreA [Vibrio cholerae bv. albensis
           VL426]
          Length = 150

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/151 (47%), Positives = 111/151 (73%), Gaps = 2/151 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M++K+P+T++G +K+ +E   R  + RP+I +AI+EAR  GDL ENAEY AA+E Q + E
Sbjct: 1   MMEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICE 59

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
            ++ ++E  ++ A+VID++ M    ++ FGATV++++ NS ++K YQIVGD EAD++SG 
Sbjct: 60  AQIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGR 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTY 150
           +S++SPIAR LIGK  GD +S+  PGG K Y
Sbjct: 120 ISVNSPIARGLIGKFEGDEVSIATPGGNKVY 150


>gi|189485414|ref|YP_001956355.1| transcription elongation factor GreA [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287373|dbj|BAG13894.1| transcription elongation factor GreA [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 158

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 90/154 (58%), Gaps = 2/154 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +I +T +G  K+ +EL   Q+ + P I   I+ AR +GDL ENAEY AAKE       
Sbjct: 1   MSEIYLTREGRKKLIKELNELQKRK-PLIQDEIASAREHGDLRENAEYCAAKETLANLIR 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ EL + I  A++I+   +  D++  G TV++ ++   D   Y IV  +EAD  +  +S
Sbjct: 60  RIMELTSKIACAKIIEEQNIDSDKVFIGVTVTIKDEYGAD-YQYAIVDLEEADPVANRIS 118

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           I SP+A+ L+G   G+ ++V  P G+  ++IL++
Sbjct: 119 IQSPLAQGLLGHTAGETVAVELPAGKTKFKILKI 152


>gi|117620745|ref|YP_854834.1| transcription elongation factor GreB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562152|gb|ABK39100.1| transcription elongation factor GreB [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 157

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++QEL +  +EERP   + ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTKLITREGYNKLKQELDFLWREERPETTRKVAWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +    ++D S     ++ FGA V +  +    K  ++IVG  E   +   +S
Sbjct: 61  RVRYLRKCLEELGIVDYSPAQEGKVFFGAWVEVENEEGETK-RFRIVGYDEIFERKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+GD   V  P G+  + I ++ +
Sbjct: 120 IDSPMARALLKKEVGDEAIVRTPVGDACWYINEISY 155


>gi|262278089|ref|ZP_06055874.1| transcription elongation factor and transcript cleavage
           [Acinetobacter calcoaceticus RUH2202]
 gi|262258440|gb|EEY77173.1| transcription elongation factor and transcript cleavage
           [Acinetobacter calcoaceticus RUH2202]
          Length = 164

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 82/156 (52%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G DK+  EL+    EERP I K ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   ++ID S     ++ FGA V +  +    K    +  D+  D     +S
Sbjct: 61  RVRYLGKRLEELKIIDYSPEQAGKVYFGAWVEIENEEGEQKTLRIVGIDEIYDHHPQHIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+GKE+ D I V+ P G+K + I  + +
Sbjct: 121 IESPMARALLGKEVDDEIEVHTPSGKKLWYINTIRY 156


>gi|163748836|ref|ZP_02156088.1| transcription elongation factor GreB [Shewanella benthica KT99]
 gi|161331610|gb|EDQ02415.1| transcription elongation factor GreB [Shewanella benthica KT99]
          Length = 161

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 89/156 (57%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  + +T KG+  + +EL++  +E RP+I K + EA A GD SENA+Y   K L    +G
Sbjct: 1   MKALLITRKGWQALDKELKYLWKEYRPQITKKVQEAAAQGDRSENADYTYNKRLLRQIDG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA + L  +     + Y+IVG  E D + G ++
Sbjct: 61  RVRYLVKRVEELKIVDYSPQQEGKVFFGAWIELENEAGDVVQ-YRIVGKDELDTKLGYIT 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALIGK++ D I V  P G K + + ++ +
Sbjct: 120 IDSPMARALIGKQVDDDIVVQTPSGSKEWYVNKIQY 155


>gi|269836289|ref|YP_003318517.1| transcription elongation factor GreA [Sphaerobacter thermophilus
           DSM 20745]
 gi|269785552|gb|ACZ37695.1| transcription elongation factor GreA [Sphaerobacter thermophilus
           DSM 20745]
          Length = 157

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 84/155 (54%), Gaps = 3/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           ++IP+T +G   +Q EL       R  I +A+  AR  GDL ENA Y AAK  Q   EGR
Sbjct: 4   ERIPITKEGLKALQDELDDLVNRRRVEIAQALQAAREEGDLRENAGYDAAKHDQAFIEGR 63

Query: 63  MAELENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           + E+E+I+ RAEVID +     R +  G+TV++  +  G ++ Y IVG  EA   +G +S
Sbjct: 64  IREIEDILRRAEVIDEAPNGDARVVRLGSTVTI--EIDGAQETYTIVGAVEAKPAAGRIS 121

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP  RAL+G   G+ + +  P       I+ V 
Sbjct: 122 NESPFGRALLGHREGEEVEIQTPAAVLHARIVNVE 156


>gi|149184390|ref|ZP_01862708.1| transcription elongation factor [Erythrobacter sp. SD-21]
 gi|148831710|gb|EDL50143.1| transcription elongation factor [Erythrobacter sp. SD-21]
          Length = 159

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 2/154 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T  G+  ++        +ERP I++ +S A   GD SEN +Y   ++     +  + 
Sbjct: 6   NPITPAGYAAMKARYDHLLGKERPEIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRELG 65

Query: 65  ELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            L   +  A VI  S      R  FGATV+L +++  ++K   +VGD E D  +G +  S
Sbjct: 66  HLARRMKAARVIVPSDQPDKSRAFFGATVTLADED-DNEKTVTLVGDDEQDASAGRIGWS 124

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL G  +GD+ +V  PGGE+ +EI+ + +
Sbjct: 125 SPLARALKGAGVGDLRTVRLPGGEREWEIVSIDY 158


>gi|167768162|ref|ZP_02440215.1| hypothetical protein CLOSS21_02718 [Clostridium sp. SS2/1]
 gi|317499617|ref|ZP_07957879.1| transcription elongation factor GreA [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167709686|gb|EDS20265.1| hypothetical protein CLOSS21_02718 [Clostridium sp. SS2/1]
 gi|291560188|emb|CBL38988.1| transcription elongation factor GreA [butyrate-producing bacterium
           SSC/2]
 gi|316893092|gb|EFV15312.1| transcription elongation factor GreA [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 159

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 84/158 (53%), Gaps = 3/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T  G   ++ EL+  +   R  I + I EAR  GDLSENAEY AAK+ Q  
Sbjct: 1   MAEAKKNILTPDGLKALEDELQELKVVRRKEIAQKIKEAREQGDLSENAEYDAAKDEQRD 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ E+E I+  A VID        I+ G  V L +   G +  Y IVG  EAD+   
Sbjct: 61  MEARIEEIEKILKNAVVIDEKFEK-GVISLGCHVLLEDITLGKEVTYHIVGSTEADILQN 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  +PI RAL+GK++GD++SV        + ++ V 
Sbjct: 120 KISNEAPIGRALLGKKIGDVVSVEGINQVNDFRVIDVQ 157


>gi|212637544|ref|YP_002314069.1| transcription elongation factor and transcript cleavage [Shewanella
           piezotolerans WP3]
 gi|212559028|gb|ACJ31482.1| Transcription elongation factor and transcript cleavage [Shewanella
           piezotolerans WP3]
          Length = 160

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 88/156 (56%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +GFDK+Q+EL +  +E RP I K +S A + GD SENA+Y   K+     + 
Sbjct: 1   MRTNIVTREGFDKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKKKLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   I   +V+D S     ++ FGA V +   +   K++++IVG  E   ++  +S
Sbjct: 61  RVRYLRKTIENVQVVDYSPAQEGKVFFGAWVEIENDDGE-KRSFKIVGYDEIFGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+AR L+ KE+ D   ++ P GE+ + I ++ +
Sbjct: 120 IDSPMARGLLKKEVDDEAVIHTPAGEQVWYINRISY 155


>gi|66045305|ref|YP_235146.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           syringae B728a]
 gi|63256012|gb|AAY37108.1| Prokaryotic transcription elongation factor GreB [Pseudomonas
           syringae pv. syringae B728a]
 gi|330899247|gb|EGH30666.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330944671|gb|EGH46613.1| transcription elongation factor GreB [Pseudomonas syringae pv. pisi
           str. 1704B]
 gi|330973780|gb|EGH73846.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           aceris str. M302273PT]
 gi|330977558|gb|EGH77502.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 157

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T  G + +++EL +  +E RP I + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKI-ITRDGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V+  S     R+ FGA V +  +    K  ++IVG  E   ++  +
Sbjct: 60  RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIENEAGDLK-KFRIVGYDEIYGRNDYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+GD + VN P GEK + +  + +
Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIDY 155


>gi|330993418|ref|ZP_08317353.1| Transcription elongation factor greB [Gluconacetobacter sp. SXCC-1]
 gi|329759448|gb|EGG75957.1| Transcription elongation factor greB [Gluconacetobacter sp. SXCC-1]
          Length = 178

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 84/153 (54%), Gaps = 2/153 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            VT  G   ++ EL    ++ERP+I++ +S A   GD SEN +YQ  K      + R+  
Sbjct: 23  YVTPAGIAVMRAELNALLRDERPKIVEIVSWAAGNGDRSENGDYQYGKRRLREIDRRIRF 82

Query: 66  LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           L   I  A V+D +      R+ FGATV+ V     +++   I+G  EAD+ +G +S+ S
Sbjct: 83  LTKRIDNAVVVDPAAQPQRGRVFFGATVTYV-TERDEERTVTILGVDEADMAAGQISLVS 141

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+ARAL+   +GD + +  P GE+  E+L + +
Sbjct: 142 PVARALMRAAVGDEVRLATPRGEEMIEVLAISY 174


>gi|116493088|ref|YP_804823.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC
           25745]
 gi|116103238|gb|ABJ68381.1| transcription elongation factor GreA [Pediococcus pentosaceus ATCC
           25745]
          Length = 154

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/151 (39%), Positives = 90/151 (59%), Gaps = 3/151 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           +P+T  G+ KI QE+   +Q  RP +IKA+++ARA GDLSENAEY AAK      EGR+ 
Sbjct: 6   VPMTPSGYAKINQEIDDLKQT-RPALIKALADARALGDLSENAEYSAAKRDLRRMEGRLR 64

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L+  I+ +++I     +  +I  G+ V +   +  D+  Y+IVG  EADV +  +S  S
Sbjct: 65  YLQRQISYSKII--QNTNHSKIDLGSIVKMRFVDDHDEITYEIVGKHEADVVNNKISFQS 122

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+  AL+  +  DI+ V AP  +   EIL++
Sbjct: 123 PLGSALMHHKTHDIVLVTAPDEQYQVEILEI 153


>gi|289673217|ref|ZP_06494107.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           syringae FF5]
          Length = 157

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T  G   +++EL +  +E RP I + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKI-ITRDGHQALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V+  S     R+ FGA V +  +    K  ++IVG  E   ++  +
Sbjct: 60  RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIENEAGDLK-KFRIVGYDEIYGRNDYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+GD + VN P GEK + +  + +
Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIDY 155


>gi|261367899|ref|ZP_05980782.1| transcription elongation factor GreA [Subdoligranulum variabile DSM
           15176]
 gi|282570711|gb|EFB76246.1| transcription elongation factor GreA [Subdoligranulum variabile DSM
           15176]
          Length = 162

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 90/158 (56%), Gaps = 3/158 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  ++ VT +G+ K++Q+L   +  +R  +   I  AR YGDLSENAEY AAKE Q + E
Sbjct: 1   MAKEVVVTREGYKKLEQDLNELRTVKRKEVADKIKVARGYGDLSENAEYDAAKEEQAIVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVE--KNSGDKKNYQIVGDQEADVQSG 118
            R+A+LE  +  A +ID S +S D ++ G  V ++    +  + + Y I G  EAD+   
Sbjct: 61  ARIADLEATLKVARIIDDSELSNDTVSIGMRVKILAEGDDPDEAEEYDITGSTEADMNLN 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155
            +S  SP+  ALIG + GD + V  P G    Y++L V
Sbjct: 121 RISDESPVGAALIGHKAGDEVDVTLPNGSIIVYKVLAV 158


>gi|220917962|ref|YP_002493266.1| transcription elongation factor GreB [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219955816|gb|ACL66200.1| transcription elongation factor GreB [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 163

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +GF ++  E      E RPRI+  +  A A GD SENAEY   K+     + R+  
Sbjct: 7   YITPEGFRRLAAEHARIWTELRPRIVAEVEAAAALGDRSENAEYIYGKKKLRELDRRLRF 66

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +    V++       R  FGA V++ E+  G  +  ++VG  E DV +GL+S+ +P
Sbjct: 67  LSEKMDSLSVVEPRAHPDGRAFFGAWVTV-EQEDGQARRVRLVGPDEFDVAAGLISVDAP 125

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + RAL+GK  GD++ V+ P G     +++V W
Sbjct: 126 LGRALLGKREGDVVVVHRPAGMVELTVVEVSW 157


>gi|15642709|ref|NP_232342.1| transcription elongation factor GreB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121586617|ref|ZP_01676402.1| transcription elongation factor GreB [Vibrio cholerae 2740-80]
 gi|121726717|ref|ZP_01679942.1| transcription elongation factor GreB [Vibrio cholerae V52]
 gi|147675721|ref|YP_001218203.1| transcription elongation factor GreB [Vibrio cholerae O395]
 gi|153817456|ref|ZP_01970123.1| transcription elongation factor GreB [Vibrio cholerae NCTC 8457]
 gi|153821253|ref|ZP_01973920.1| transcription elongation factor GreB [Vibrio cholerae B33]
 gi|227082829|ref|YP_002811380.1| transcription elongation factor GreB [Vibrio cholerae M66-2]
 gi|229507237|ref|ZP_04396742.1| transcription elongation factor GreB [Vibrio cholerae BX 330286]
 gi|229509842|ref|ZP_04399323.1| transcription elongation factor GreB [Vibrio cholerae B33]
 gi|229516963|ref|ZP_04406409.1| transcription elongation factor GreB [Vibrio cholerae RC9]
 gi|229606743|ref|YP_002877391.1| transcription elongation factor GreB [Vibrio cholerae MJ-1236]
 gi|254851252|ref|ZP_05240602.1| transcription elongation factor GreB [Vibrio cholerae MO10]
 gi|255744327|ref|ZP_05418279.1| transcription elongation factor GreB [Vibrio cholera CIRS 101]
 gi|262158563|ref|ZP_06029678.1| transcription elongation factor GreB [Vibrio cholerae INDRE 91/1]
 gi|262170043|ref|ZP_06037732.1| transcription elongation factor GreB [Vibrio cholerae RC27]
 gi|298500470|ref|ZP_07010274.1| transcription elongation factor GreB [Vibrio cholerae MAK 757]
 gi|25453013|sp|Q9KNL7|GREB_VIBCH RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|9657312|gb|AAF95855.1| transcription elongation factor GreB [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121549176|gb|EAX59209.1| transcription elongation factor GreB [Vibrio cholerae 2740-80]
 gi|121630878|gb|EAX63260.1| transcription elongation factor GreB [Vibrio cholerae V52]
 gi|126512042|gb|EAZ74636.1| transcription elongation factor GreB [Vibrio cholerae NCTC 8457]
 gi|126521185|gb|EAZ78408.1| transcription elongation factor GreB [Vibrio cholerae B33]
 gi|146317604|gb|ABQ22143.1| transcription elongation factor GreB [Vibrio cholerae O395]
 gi|227010717|gb|ACP06929.1| transcription elongation factor GreB [Vibrio cholerae M66-2]
 gi|227014601|gb|ACP10811.1| transcription elongation factor GreB [Vibrio cholerae O395]
 gi|229346026|gb|EEO10998.1| transcription elongation factor GreB [Vibrio cholerae RC9]
 gi|229353316|gb|EEO18255.1| transcription elongation factor GreB [Vibrio cholerae B33]
 gi|229354742|gb|EEO19663.1| transcription elongation factor GreB [Vibrio cholerae BX 330286]
 gi|229369398|gb|ACQ59821.1| transcription elongation factor GreB [Vibrio cholerae MJ-1236]
 gi|254846957|gb|EET25371.1| transcription elongation factor GreB [Vibrio cholerae MO10]
 gi|255737852|gb|EET93245.1| transcription elongation factor GreB [Vibrio cholera CIRS 101]
 gi|262021451|gb|EEY40163.1| transcription elongation factor GreB [Vibrio cholerae RC27]
 gi|262029724|gb|EEY48373.1| transcription elongation factor GreB [Vibrio cholerae INDRE 91/1]
 gi|297540639|gb|EFH76696.1| transcription elongation factor GreB [Vibrio cholerae MAK 757]
          Length = 161

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G++K++QEL +  +E+RP I + +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L  ++   +++D S     ++ FGA V +  +    K  ++IVG +E        +
Sbjct: 61  RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIENEAGEVK-KFRIVGPEEIYGDAKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ K++ +   V+ P G K + I  + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPTGIKEWFINSIEY 156


>gi|50364917|ref|YP_053342.1| transcription elongation factor [Mesoplasma florum L1]
 gi|81391980|sp|Q6F215|GREA_MESFL RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|50363473|gb|AAT75458.1| transcription elongation factor [Mesoplasma florum L1]
          Length = 156

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 96/155 (61%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +I +T +G ++++ EL+   +  RP++I+ + EAR  GDLSENA+Y AA+  Q   E
Sbjct: 1   MAKEIILTQEGIEELKHELKHLLEVVRPQVIEELVEARNQGDLSENADYDAARNRQAEVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ ELE +I++A++I+ S+ +   I  G+ V  +  N+   +  +IVG  EAD   GL+
Sbjct: 61  ARIKELETMISKAKLIEDSSTTDGAIKIGSKVKFIMLNTKQTREVKIVGAVEADPFKGLI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SPIA+A++GK++G+ + V       + EI +V
Sbjct: 121 SNESPIAKAILGKKVGESVEVKDINAPYSIEIKEV 155


>gi|170720942|ref|YP_001748630.1| transcription elongation factor GreB [Pseudomonas putida W619]
 gi|169758945|gb|ACA72261.1| transcription elongation factor GreB [Pseudomonas putida W619]
          Length = 157

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 84/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T++G + +++EL    +  RP I + ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MSTNIITTEGHEALKKELDHLWRVYRPEITQKVAWAASLGDRSENADYQYNKKLLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +V+  S     ++ FGA V +   +      ++IVG  E   ++  +S
Sbjct: 61  RVRYLRKRLEDVKVVAYSPQQEGKVFFGAWVEIENDDGE-TLKFRIVGYDEIYGRNDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE GD + V+ P GE T+ +  + +
Sbjct: 120 IDSPMARALLKKEKGDEVVVHTPTGEATWYVSSISY 155


>gi|293609918|ref|ZP_06692220.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828370|gb|EFF86733.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 164

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 82/156 (52%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G DK+  EL+    EERP I K ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +  +    K    +  D+  D     +S
Sbjct: 61  RVRYLGKRLEELKIVDYSPEQDGKVYFGAWVEIENEEGEQKTLRIVGIDEIYDHHPQHIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+GKE+ D I V+ P G+K + I  + +
Sbjct: 121 IESPMARALLGKEVDDEIEVHTPSGKKLWYINTIRY 156


>gi|153828361|ref|ZP_01981028.1| transcription elongation factor GreB [Vibrio cholerae 623-39]
 gi|229513643|ref|ZP_04403107.1| transcription elongation factor GreB [Vibrio cholerae TMA 21]
 gi|229521789|ref|ZP_04411207.1| transcription elongation factor GreB [Vibrio cholerae TM 11079-80]
 gi|229527359|ref|ZP_04416751.1| transcription elongation factor GreB [Vibrio cholerae 12129(1)]
 gi|261211278|ref|ZP_05925567.1| transcription elongation factor GreB [Vibrio sp. RC341]
 gi|262166724|ref|ZP_06034461.1| transcription elongation factor GreB [Vibrio mimicus VM223]
 gi|148876191|gb|EDL74326.1| transcription elongation factor GreB [Vibrio cholerae 623-39]
 gi|229334991|gb|EEO00476.1| transcription elongation factor GreB [Vibrio cholerae 12129(1)]
 gi|229341383|gb|EEO06387.1| transcription elongation factor GreB [Vibrio cholerae TM 11079-80]
 gi|229349520|gb|EEO14476.1| transcription elongation factor GreB [Vibrio cholerae TMA 21]
 gi|260839779|gb|EEX66390.1| transcription elongation factor GreB [Vibrio sp. RC341]
 gi|262026440|gb|EEY45108.1| transcription elongation factor GreB [Vibrio mimicus VM223]
          Length = 160

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G++K++QEL +  +E+RP I + +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L  ++   +++D S     ++ FGA V +  +    K  ++IVG +E        +
Sbjct: 61  RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIENEAGDVK-KFRIVGPEEIYGDAKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ K++ +   V+ P G K + I  + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPTGMKEWFINSIEY 156


>gi|297581551|ref|ZP_06943474.1| transcription elongation factor GreB [Vibrio cholerae RC385]
 gi|297534389|gb|EFH73227.1| transcription elongation factor GreB [Vibrio cholerae RC385]
          Length = 160

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 84/157 (53%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G++K++QEL +  +E+RP I + +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L  ++   +++D S     ++ FGA V +  +    K  ++IVG +E        +
Sbjct: 61  RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIENEAGEVK-KFRIVGPEEIYGDAKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ K++ +   V  P G K + I  + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVQTPTGMKEWFINSIEY 156


>gi|126664546|ref|ZP_01735530.1| transcription elongation factor GreB [Marinobacter sp. ELB17]
 gi|126630872|gb|EBA01486.1| transcription elongation factor GreB [Marinobacter sp. ELB17]
          Length = 157

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+D +QQEL    + ERP + + ++ A   GD SENA+YQ  K+     + 
Sbjct: 1   MKTNLITREGYDLLQQELDQLWRHERPEVTRKVTWAAGLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L       +V+  S     ++ FGA +SL++++      ++IVG  E   ++   S
Sbjct: 61  RVRYLRKRFEELKVVAYSPEQEGKVFFGAWISLLDEDDKP-LTFRIVGPDEIYGRNDYAS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + +P+ RA + KE+GD + V  P GEKT+ I  + +
Sbjct: 120 VDAPLVRACLKKEVGDEVVVILPAGEKTWLIETIRY 155


>gi|117922445|ref|YP_871637.1| transcription elongation factor GreB [Shewanella sp. ANA-3]
 gi|117614777|gb|ABK50231.1| transcription elongation factor GreB [Shewanella sp. ANA-3]
          Length = 167

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+  + +EL++  +E RP+I   + EA A GD SENA+Y   K L    + 
Sbjct: 1   MKAHLITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     +I FGA   L  +       Y+IVG  E D + G ++
Sbjct: 61  RVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELENEAGECV-RYRIVGKDELDTKLGYIT 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALIGK++ D + V  P G K + I  + +
Sbjct: 120 IDSPMARALIGKQVDDEVVVQTPSGPKEWYINDIRY 155


>gi|224826318|ref|ZP_03699420.1| transcription elongation factor GreB [Lutiella nitroferrum 2002]
 gi|224601419|gb|EEG07600.1| transcription elongation factor GreB [Lutiella nitroferrum 2002]
          Length = 185

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 78/156 (50%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T +G+ +++ EL      ERP ++  ++ A + GD SEN +Y   K      + 
Sbjct: 26  ATKNYLTPQGWQRLKNELYHLVHRERPEMVNVVNWAASNGDRSENGDYLYGKRRLREIDR 85

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +  AEV+D  T       F +   L+ +  G ++  +IVG  E D+  G +S
Sbjct: 86  RIRFLTKRLEIAEVVDPETRETTDQIFFSATVLILRGDGSEQLLRIVGVDEIDLPRGHIS 145

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIAR LI    GD +    P GE+T E+L+V +
Sbjct: 146 WISPIARCLIKAREGDEVVFRGPDGEETIEVLEVRY 181


>gi|28869465|ref|NP_792084.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213968119|ref|ZP_03396264.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tomato T1]
 gi|301383559|ref|ZP_07231977.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tomato Max13]
 gi|302058446|ref|ZP_07249987.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tomato K40]
 gi|302133441|ref|ZP_07259431.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|37999581|sp|Q883T5|GREB_PSESM RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|28852706|gb|AAO55779.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213927099|gb|EEB60649.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tomato T1]
 gi|330875597|gb|EGH09746.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|331016245|gb|EGH96301.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 157

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 88/157 (56%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T  G + +++EL +  +E RP I + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKI-ITQGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V+  S     R+ FGA V +  +    K  +++VG  E   ++  +
Sbjct: 60  RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIENEAGDLK-KFRVVGYDEIYGRNDYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+GD + VN P GEK + +  +++
Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIVY 155


>gi|182420076|ref|ZP_02951310.1| transcription elongation factor GreA [Clostridium butyricum 5521]
 gi|237669518|ref|ZP_04529498.1| transcription elongation factor GreA [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376113|gb|EDT73700.1| transcription elongation factor GreA [Clostridium butyricum 5521]
 gi|237654962|gb|EEP52522.1| transcription elongation factor GreA [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 161

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 90/158 (56%), Gaps = 3/158 (1%)

Query: 1   MVD---KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M +   +  +T +G  K++ EL + +  +R  I + I  A  YGDLSEN+EY  AK  Q 
Sbjct: 1   MSENKKQYVMTYEGVKKLENELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQA 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
             EGR+  LEN++  A V+D S +  D ++ G+ V + +    ++  Y IVG  EAD  +
Sbjct: 61  FTEGRIVTLENMLKNAVVVDESEIPKDVVSVGSKVKVKDYEFDEEVEYSIVGSAEADPMN 120

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             +S  SP+  ALIGK++G+I+ V  P G   +EIL +
Sbjct: 121 FKISNESPVGSALIGKKIGEIVEVQIPDGVNKFEILGI 158


>gi|110005071|emb|CAK99401.1| probable transcription elongation factor grea protein [Spiroplasma
           citri]
          Length = 156

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/156 (36%), Positives = 87/156 (55%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M ++I +T +G   +++EL       RP +I+ + EARA GDLSENA+Y AA+  Q   E
Sbjct: 1   MNEEILLTKEGIKDLKEELDNLINVIRPEVIEELKEARAQGDLSENADYDAARNRQAEVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ E+E+++T+A+ I         I  G+TV+        K   +IVG  EA+     +
Sbjct: 61  GRIKEIESLLTKAKEIKEVKSKTGIIKLGSTVTFTNLLINKKYELKIVGAVEANPFENTI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPIA+A+IGK+ GD+I +         +IL V 
Sbjct: 121 SNESPIAKAIIGKKAGDLIEIKGIQEPYKVKILTVE 156


>gi|299769038|ref|YP_003731064.1| transcription elongation factor GreB [Acinetobacter sp. DR1]
 gi|298699126|gb|ADI89691.1| transcription elongation factor GreB [Acinetobacter sp. DR1]
          Length = 164

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 82/156 (52%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G DK+  EL+    EERP I K ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   ++ID +     ++ FGA V +  +    K    +  D+  D     +S
Sbjct: 61  RVRYLGKRLEELKIIDYAPEQDGKVYFGAWVEIENEEGEQKTLRIVGIDEIYDHHPQHIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+GKE+ D I V+ P G+K + I  + +
Sbjct: 121 IESPMARALLGKEVDDEIEVHTPSGKKLWYINTIRY 156


>gi|253580948|ref|ZP_04858210.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847790|gb|EES75758.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 160

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 86/154 (55%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            K  +T  G  K+++EL   +  +R  + + I EAR  GDLSENAEY AAK+ Q   E R
Sbjct: 4   KKNLLTYAGLKKLEEELHDLKVVKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E I+  AEV+    +  D+I+ G  V + +    +    +IVG  EA+   G +S 
Sbjct: 64  IEEIEKILKNAEVVVEDEVDLDKISVGCKVKVHDFEFEEDIELKIVGSTEANSLEGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +ALIG   GD++ V  P G   Y++L++ 
Sbjct: 124 ESPVGKALIGAHTGDVVEVEMPAGIMKYKVLEIQ 157


>gi|90020882|ref|YP_526709.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40]
 gi|89950482|gb|ABD80497.1| GreA/GreB family elongation factor [Saccharophagus degradans 2-40]
          Length = 157

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 76/156 (48%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G   ++ EL    + ERP + K +S A + GD SENA+YQ  K+     + 
Sbjct: 1   MRTPLITPQGLKDLKAELDELWRVERPEVTKKVSWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   I   +V++       ++ FGA V +          ++IVG  E   +   +S
Sbjct: 61  RVRYLRKCIENLKVVEYHPDQEGKVFFGAWVEVENDEGE-VLTFRIVGYDEIFNRKNYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I +P+ARAL+ KE+ D   V    G+ T+ I  + +
Sbjct: 120 IDAPMARALLKKEVDDEAVVRTEAGKTTWYINAIRY 155


>gi|28378269|ref|NP_785161.1| transcription elongation factor GreA [Lactobacillus plantarum
           WCFS1]
 gi|254556476|ref|YP_003062893.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1]
 gi|300767199|ref|ZP_07077111.1| transcription elongation factor GreA [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308180418|ref|YP_003924546.1| transcription elongation factor GreA [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|38257515|sp|Q88WQ9|GREA2_LACPL RecName: Full=Transcription elongation factor greA 2; AltName:
           Full=Transcript cleavage factor greA 2
 gi|28271104|emb|CAD64009.1| transcription elongation factor GreA [Lactobacillus plantarum
           WCFS1]
 gi|254045403|gb|ACT62196.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1]
 gi|300495018|gb|EFK30174.1| transcription elongation factor GreA [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|308045909|gb|ADN98452.1| transcription elongation factor GreA [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 160

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 95/158 (60%), Gaps = 2/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +    P+T +G  K+++EL   +  +RP II  I  AR+YGDLSEN+EY++AK  Q+L
Sbjct: 1   MAEDKTYPMTEEGKVKLEKELEDLRINQRPEIINRIKIARSYGDLSENSEYESAKNEQSL 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+  +E+++  AE+ID   +    ++ G  V+  E    + ++Y IVG  EAD   G
Sbjct: 61  LENRIKTVEHMLQYAEIIDSDKIDETEVSVGKIVTFKELPDEEPESYTIVGAAEADPMVG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA+ LIG  + + +++N P G  T +IL+V 
Sbjct: 121 KISNDSPIAKGLIGHHVDEEVAINIPAGTMTVKILKVE 158


>gi|330958996|gb|EGH59256.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 157

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T  G + +++EL +  +E RP I + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKI-ITRDGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V+  S     R+  GA V +  +    K  ++IVG  E   ++  +
Sbjct: 60  RRVRYLRKRLEDMRVVSYSPEQEGRVFLGAWVEIENEAGDLK-KFRIVGYDEIYGRNDYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+GD + VN P GEK + +  +++
Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIVY 155


>gi|260770789|ref|ZP_05879718.1| transcription elongation factor GreB [Vibrio furnissii CIP 102972]
 gi|260614026|gb|EEX39216.1| transcription elongation factor GreB [Vibrio furnissii CIP 102972]
 gi|315178831|gb|ADT85745.1| transcription elongation factor GreB [Vibrio furnissii NCTC 11218]
          Length = 161

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 3/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K+++E  +   E RP + K ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITREGYEKLKKEHDYLWHERRPEVTKIVTWAASLGDRSENADYTFNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGL 119
           R+  L  ++   +++D S     ++ FGA V +       K  ++IVG +E   D     
Sbjct: 61  RVRFLRKLLPELKIVDYSPQQEGKVFFGAWVEIENSAGDVK-RFRIVGPEEIYGDDVKEY 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +SI SP+ARAL+ KE+ D   V  P GEK + I ++ +
Sbjct: 120 ISIDSPMARALLKKEVDDEFVVRTPSGEKEWFINRIEY 157


>gi|258510226|ref|YP_003183660.1| transcription elongation factor GreA [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257476952|gb|ACV57271.1| transcription elongation factor GreA [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 158

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 94/157 (59%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK + +T +G  K+++EL   +  +R  + + I  A +YGD+SEN+EY+ AK  Q   
Sbjct: 1   MADKEVLLTPEGLRKLEEELELLKSVKRREVAERIKVAISYGDISENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE  +  A VI+   +  + ++ G+TV +++ +  ++  Y IVG  EA+     
Sbjct: 61  EGRIMTLEKQLRNARVINEDEVDTNVVSIGSTVKVLDLDLDEEVEYTIVGSAEANPAENK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +AL+GK++G I+ VN P G   ++IL++ 
Sbjct: 121 ISNESPVGKALLGKQIGSIVEVNVPAGVIKFKILEIK 157


>gi|212696520|ref|ZP_03304648.1| hypothetical protein ANHYDRO_01058 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325849676|ref|ZP_08170879.1| transcription elongation factor GreA [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|212676456|gb|EEB36063.1| hypothetical protein ANHYDRO_01058 [Anaerococcus hydrogenalis DSM
           7454]
 gi|325480017|gb|EGC83095.1| transcription elongation factor GreA [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 157

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 91/158 (57%), Gaps = 3/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  ++ ++ +   K+Q EL + + + RP I + I EAR++GDLSENA+Y  AK  Q  
Sbjct: 1   MTEQKEVILSKEYLQKLQDELEYLKTKRRPEIAEKIKEARSFGDLSENADYDEAKNEQGE 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+A++E++I  A+  + ST   +    G+ V + ++   +   Y+IVG  E++   G
Sbjct: 61  VESRIAKVEDMIRHAKTFEDSTNKDEVS-VGSKVLIHDEEFDEDFEYKIVGTAESNPLEG 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+  ALIGK+ GD + V  P G+  Y I ++ 
Sbjct: 120 FISNESPVGEALIGKKKGDKVEVATPNGKCYYTIKEIR 157


>gi|227498561|ref|ZP_03928705.1| GreA/GreB family elongation factor [Acidaminococcus sp. D21]
 gi|226904017|gb|EEH89935.1| GreA/GreB family elongation factor [Acidaminococcus sp. D21]
          Length = 173

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 96/158 (60%), Gaps = 3/158 (1%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M ++   +T +G  K++ EL + + E+R ++ + +  A +YGD+SEN+EY  AK  Q   
Sbjct: 1   MAEQETILTEEGLKKLEDELDYLRSEKRQQVAERLKVAISYGDISENSEYDDAKNEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG- 118
           EGR+  LE +I  A+VI  S ++   ++ G+ V++ +  + +++ Y +VG  EAD  +  
Sbjct: 61  EGRILTLEKMIRNAKVIKDSEINKKVVSLGSQVTIKDMETEEEEEYTVVGTTEADPMADP 120

Query: 119 -LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             +S  SP+ +A++G+++G +  V  P GE +Y+I+ +
Sbjct: 121 PRISNESPVGKAILGQKVGSVCKVPTPAGELSYKIVSI 158


>gi|256544717|ref|ZP_05472089.1| transcription elongation factor GreA [Anaerococcus vaginalis ATCC
           51170]
 gi|256399606|gb|EEU13211.1| transcription elongation factor GreA [Anaerococcus vaginalis ATCC
           51170]
          Length = 157

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 3/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  ++ ++ +   K+Q EL + + + RP I + I EAR++GDLSENA+Y  AK  Q  
Sbjct: 1   MTEQKEVILSKEYLQKLQDELEYLKTKRRPEIAEKIKEARSFGDLSENADYDEAKNEQGE 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+A++E++I  A+  + ST   +    G+ V + ++   +   Y+IVG  E++   G
Sbjct: 61  VESRIAKVEDMIRHAKTFEDSTNKDEVS-VGSKVLIHDEEFDEDLEYKIVGTAESNPLEG 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+  AL+GK+ GD + V  P G+  Y I ++ 
Sbjct: 120 FISNESPVGEALLGKKKGDKVEVVTPNGKCYYTIKEIR 157


>gi|269959400|ref|ZP_06173783.1| Transcription elongation factor greB [Vibrio harveyi 1DA3]
 gi|269835837|gb|EEZ89913.1| Transcription elongation factor greB [Vibrio harveyi 1DA3]
          Length = 161

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+++++ EL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTNLITREGYNRLKTELDFLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   + + +V+D S     ++ FGA V +  +    K  ++IVG  E      G +
Sbjct: 61  RVRYLRKRLEQVKVVDYSPQQEGKVFFGAWVEIENEAGDVKN-FRIVGPDEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+ D  +V  P G K + +  + +
Sbjct: 120 SIDSPMARALLKKEVDDEFAVRTPEGYKEWFLNSIRY 156


>gi|226941107|ref|YP_002796181.1| transcription elongation factor GreB [Laribacter hongkongensis
           HLHK9]
 gi|226716034|gb|ACO75172.1| GreB [Laribacter hongkongensis HLHK9]
          Length = 185

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 73/156 (46%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T  G+ +++ EL      ERP + + ++ A   GD SEN +Y   K      + 
Sbjct: 26  STKNYLTPAGWQRMKDELYRLVNHERPEVTQVVNWAAGNGDRSENGDYIYGKRRLREIDR 85

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +  AEV+D          F     ++ +  G ++   IVG  E D+  G +S
Sbjct: 86  RIRFLTKRLEIAEVVDPERREATDQVFFGATVVMLRGDGSEQTVSIVGVDELDLSRGHIS 145

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIAR L+    GD++    P GE+  EIL+V +
Sbjct: 146 WISPIARTLLKAREGDVVWFRGPDGEEEIEILEVRY 181


>gi|160881677|ref|YP_001560645.1| transcription elongation factor GreA [Clostridium phytofermentans
           ISDg]
 gi|254799557|sp|A9KIP3|GREA_CLOPH RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|160430343|gb|ABX43906.1| transcription elongation factor GreA [Clostridium phytofermentans
           ISDg]
          Length = 160

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T +G  +++ EL+  +  +R  + + I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MAEKKNILTYEGLKQLEDELQDLKVNKRKEVSQKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ E++ I+  AEV+    +  D +  G  V +++    D+  Y+IVG  EA+   G 
Sbjct: 61  EARIEEIDKILKNAEVVVEDEVDVDTVNIGCLVRILDMEFNDELEYKIVGSTEANSLKGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +ALIG    D+I +   G    Y++L++ 
Sbjct: 121 ISNESPVGKALIGARKDDVIEIEINGNSFKYKVLEIQ 157


>gi|271502327|ref|YP_003335353.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
 gi|270345882|gb|ACZ78647.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
          Length = 160

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++ + QEL +  +E RP I + ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTDLITREGYEALHQELNYLWKERRPEITEKVAWAASLGDRSENADYLYNKRLLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +    V+D S     ++ FGA    VE   G+ K ++IVG  E   +   +S
Sbjct: 61  RVRYLRKRLQVVRVVDYSPQQDGKVFFGAW-VEVENEEGEVKRFRIVGPDEIYGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I +P+ARAL+ K + +   V  P G + + + ++ +
Sbjct: 120 IDAPMARALLKKAVDEEAVVTTPTGPRVWYVNKIDY 155


>gi|325123157|gb|ADY82680.1| transcription elongation factor GreB [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 164

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 83/156 (53%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    ++  G DK+  EL+    EERP I K ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MKSNLISRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +  +    K    +  D+  D     +S
Sbjct: 61  RVRYLGKRLEELKIVDYSPEQDGKVYFGAWVEIENEEGEQKTLRIVGIDEIYDHHPQHIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+GKE+ D I V+ P G+K + I ++ +
Sbjct: 121 IESPMARALLGKEVDDEIEVHTPSGKKLWYINKIRY 156


>gi|258620411|ref|ZP_05715449.1| Transcription elongation factor greB [Vibrio mimicus VM573]
 gi|258626042|ref|ZP_05720898.1| Transcription elongation factor greB [Vibrio mimicus VM603]
 gi|262170353|ref|ZP_06038031.1| transcription elongation factor GreB [Vibrio mimicus MB-451]
 gi|262402001|ref|ZP_06078566.1| transcription elongation factor GreB [Vibrio sp. RC586]
 gi|258581693|gb|EEW06586.1| Transcription elongation factor greB [Vibrio mimicus VM603]
 gi|258587290|gb|EEW12001.1| Transcription elongation factor greB [Vibrio mimicus VM573]
 gi|261891429|gb|EEY37415.1| transcription elongation factor GreB [Vibrio mimicus MB-451]
 gi|262351973|gb|EEZ01104.1| transcription elongation factor GreB [Vibrio sp. RC586]
          Length = 160

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G++K++QEL +  +E+RP I + +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L  ++   +++D S     ++ FGA V +  +    K  ++IVG +E        +
Sbjct: 61  RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIENEAGEVK-KFRIVGPEEIYGDAKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ K++ +   V+ P G K + I  + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPTGMKEWFINSIEY 156


>gi|331002785|ref|ZP_08326299.1| hypothetical protein HMPREF0491_01161 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413274|gb|EGG92642.1| hypothetical protein HMPREF0491_01161 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 160

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T +G   +++EL+  +  +R  I + I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MAEKKHILTYEGLKNLEEELQDLKVNKRKEIAEKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ +LEN++  AEV+    +  D I  G  V +++K+  D+ +++IVG  EAD  +G 
Sbjct: 61  EARIEQLENLLKNAEVVVEDEVDLDTIGIGCMVKILDKDFDDELDFKIVGSTEADSLAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +AL+GK +G+   V    G   Y +L++ 
Sbjct: 121 ISNESPLGKALLGKRIGETAVVETQAGVSEYMVLEIQ 157


>gi|88798240|ref|ZP_01113826.1| transcription elongation factor GreB [Reinekea sp. MED297]
 gi|88779016|gb|EAR10205.1| transcription elongation factor GreB [Reinekea sp. MED297]
          Length = 170

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 84/152 (55%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G  +++ EL    + ERPR+ + +S+A   GD SENAEY   K+     + R+  
Sbjct: 14  YITPEGEARMRAELHELWKVERPRVTQEVSDAAKQGDRSENAEYIYGKKRLRQIDSRVRF 73

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + + +V+        R+ FGA V +V+++   +  ++IVG  E DV    +S+ SP
Sbjct: 74  LTKRLEKLQVVHARPDDQSRVFFGAWVRVVDEDESPRV-FRIVGTDEFDVDPRYISVDSP 132

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +ARAL+ K++ D + V  P GE  Y + Q+ +
Sbjct: 133 MARALLKKQVDDEVIVRLPDGEAVYYVDQISY 164


>gi|317495734|ref|ZP_07954099.1| transcription elongation factor GreA [Gemella moribillum M424]
 gi|316914187|gb|EFV35668.1| transcription elongation factor GreA [Gemella moribillum M424]
          Length = 162

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 97/156 (62%), Gaps = 4/156 (2%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T +G+DK+ +EL   ++ +RP +I+ I  AR++GDLSEN+EY AAK+ Q   E R+
Sbjct: 8   EYQMTQEGYDKLVEELEHYKKVKRPEVIEKIKVARSFGDLSENSEYDAAKDEQGFIEQRI 67

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            E+E +I  A +I++   S   I  G TV+  E  +G  + Y+IVG  EA+     +S  
Sbjct: 68  LEMEQMIRYAVIIELDEKS-SAIRLGNTVTYQELPNGATETYKIVGSAEANPFEFKISND 126

Query: 124 SPIARALIGKELGDIISVNAPGG---EKTYEILQVL 156
           SP+A+AL+GKE+GD++ V+ P G       ++L+V 
Sbjct: 127 SPVAQALLGKEVGDVVKVSLPTGPEDSMDIKVLEVE 162


>gi|154249834|ref|YP_001410659.1| transcription elongation factor GreA [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153770|gb|ABS61002.1| transcription elongation factor GreA [Fervidobacterium nodosum
           Rt17-B1]
          Length = 156

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 89/154 (57%), Gaps = 1/154 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+ +T +G++ +++EL   +++    I + I  AR  GDLSEN+EYQ AK  Q     
Sbjct: 1   MEKVKLTKEGYELLKKELDELKRQLMFEIPERIKAARELGDLSENSEYQEAKNEQGRIAS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE ++  AE+I  ++ S      G  V L   ++G++   Q+V  QEAD+ +  +S
Sbjct: 61  RINELEQMLMNAEIITEASNSSTV-NLGDWVILKNLDTGEEMKIQLVNPQEADIFANKIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           I SP+ R + G + G  + + AP G   Y+++++
Sbjct: 120 IESPLGRGVNGAKKGQTVKIKAPKGIVKYQVIEI 153


>gi|116515169|ref|YP_802798.1| hypothetical protein BCc_237 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285435|sp|Q057J4|GREA_BUCCC RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|116257023|gb|ABJ90705.1| transcription elongation factor [Buchnera aphidicola str. Cc
           (Cinara cedri)]
          Length = 159

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/159 (44%), Positives = 108/159 (67%), Gaps = 1/159 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +KIP+T +GF+K++ EL+  +   RP I+KAI+ AR  GDL ENAEY +A+E Q+  E
Sbjct: 1   MFNKIPMTLRGFNKLKSELKKLKYITRPCIVKAIANARQLGDLKENAEYHSAREEQSFCE 60

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
            R+ E+EN + RA++IDI+ +     + FG+TV++++ ++ +   Y IVGD EA+ +   
Sbjct: 61  NRICEIENKLLRAQIIDITKIPFKGIVIFGSTVTVLQISTSNIFVYTIVGDDEANYKEFS 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +SI SP++RALIGK+  DII VN P G   Y I ++ +I
Sbjct: 121 ISIHSPMSRALIGKKKNDIIKVNTPTGYIKYIIKKIEYI 159


>gi|169836893|ref|ZP_02870081.1| transcription elongation factor GreA [candidate division TM7
           single-cell isolate TM7a]
          Length = 151

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 87/156 (55%), Gaps = 6/156 (3%)

Query: 2   VDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++K+  +T  G ++++ EL   +   R  I + I+EAR YGDLSENAEY AA+E Q + E
Sbjct: 1   MNKVYQITEAGKNELKDELETLKG-RRGEIAEKIAEARDYGDLSENAEYDAAREEQGIVE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+AE+ENI+  A +I      G     G    +          Y +VG  EAD   G V
Sbjct: 60  TRIAEIENILQNAAII----TGGVSGQVGLGSVVELMTGSKTAVYTVVGPVEADPLEGKV 115

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  SPI  AL+GK++ DI+ +N P G+  Y+I+ + 
Sbjct: 116 SNESPIGAALMGKKVDDIVEINTPKGKLEYKIISIK 151


>gi|332665125|ref|YP_004447913.1| transcription elongation factor GreA [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332333939|gb|AEE51040.1| transcription elongation factor GreA [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 156

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 93/154 (60%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +GF+++  EL   +   R    +AI+EAR  GDLSENAEY AAKE Q L E 
Sbjct: 1   MTINYLTKEGFERLTGELDDMKTRGRAEAARAIAEAREKGDLSENAEYDAAKEAQGLLEL 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +LE  +  A V+D S +   ++   A V+++   +  K  YQ+V + EAD+++  VS
Sbjct: 61  RINDLEKQLANARVLDASEVDTSKVTVLAKVTIMNTKNKAKITYQLVSESEADLKAKKVS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +SSP+ + L+GK +G+  +V  P G+  ++I+ +
Sbjct: 121 VSSPMGQGLLGKTIGETATVRTPNGDMQFKIVDI 154


>gi|308066908|ref|YP_003868513.1| transcription elongation factor greA (transcript cleavage factor
           greA) [Paenibacillus polymyxa E681]
 gi|310639545|ref|YP_003944303.1| transcription elongation factor [Paenibacillus polymyxa SC2]
 gi|305856187|gb|ADM67975.1| Transcription elongation factor greA (Transcript cleavage factor
           greA) [Paenibacillus polymyxa E681]
 gi|309244495|gb|ADO54062.1| Transcription elongation factor [Paenibacillus polymyxa SC2]
          Length = 158

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK + +T +G  K++ EL   +  +R  + + I  A  YGD+SEN+EY+ AK  Q   
Sbjct: 1   MSDKEVILTQEGLRKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A +I+   +  D +  GATV++ +   GD   Y IVG  E+D     
Sbjct: 61  EGRVITLEKMLRNARIINSDEIDTDVVGVGATVTVEDLEFGDITEYAIVGSAESDPLQNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +A++GK+ G ++ V  P G   Y+I+ + 
Sbjct: 121 ISNESPVGKAILGKKKGTVVDVTVPAGVIQYKIVDIK 157


>gi|227518219|ref|ZP_03948268.1| transcription elongation factor GreA [Enterococcus faecalis TX0104]
 gi|227554362|ref|ZP_03984409.1| transcription elongation factor GreA [Enterococcus faecalis HH22]
 gi|229547587|ref|ZP_04436312.1| transcription elongation factor GreA [Enterococcus faecalis TX1322]
 gi|229548206|ref|ZP_04436931.1| transcription elongation factor GreA [Enterococcus faecalis ATCC
           29200]
 gi|293382163|ref|ZP_06628106.1| transcription elongation factor GreA [Enterococcus faecalis R712]
 gi|293388526|ref|ZP_06633030.1| transcription elongation factor GreA [Enterococcus faecalis S613]
 gi|307268839|ref|ZP_07550206.1| transcription elongation factor GreA [Enterococcus faecalis TX4248]
 gi|307272673|ref|ZP_07553921.1| transcription elongation factor GreA [Enterococcus faecalis TX0855]
 gi|307275101|ref|ZP_07556255.1| transcription elongation factor GreA [Enterococcus faecalis TX2134]
 gi|307278545|ref|ZP_07559617.1| transcription elongation factor GreA [Enterococcus faecalis TX0860]
 gi|307287391|ref|ZP_07567450.1| transcription elongation factor GreA [Enterococcus faecalis TX0109]
 gi|307290828|ref|ZP_07570722.1| transcription elongation factor GreA [Enterococcus faecalis TX0411]
 gi|312900390|ref|ZP_07759700.1| transcription elongation factor GreA [Enterococcus faecalis TX0470]
 gi|312902920|ref|ZP_07762117.1| transcription elongation factor GreA [Enterococcus faecalis TX0635]
 gi|312905741|ref|ZP_07764763.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO
           512]
 gi|312909063|ref|ZP_07767923.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO
           516]
 gi|312952203|ref|ZP_07771081.1| transcription elongation factor GreA [Enterococcus faecalis TX0102]
 gi|227074315|gb|EEI12278.1| transcription elongation factor GreA [Enterococcus faecalis TX0104]
 gi|227176508|gb|EEI57480.1| transcription elongation factor GreA [Enterococcus faecalis HH22]
 gi|229306685|gb|EEN72681.1| transcription elongation factor GreA [Enterococcus faecalis ATCC
           29200]
 gi|229307277|gb|EEN73264.1| transcription elongation factor GreA [Enterococcus faecalis TX1322]
 gi|291080446|gb|EFE17810.1| transcription elongation factor GreA [Enterococcus faecalis R712]
 gi|291082130|gb|EFE19093.1| transcription elongation factor GreA [Enterococcus faecalis S613]
 gi|306498137|gb|EFM67660.1| transcription elongation factor GreA [Enterococcus faecalis TX0411]
 gi|306501564|gb|EFM70860.1| transcription elongation factor GreA [Enterococcus faecalis TX0109]
 gi|306504782|gb|EFM73980.1| transcription elongation factor GreA [Enterococcus faecalis TX0860]
 gi|306508219|gb|EFM77335.1| transcription elongation factor GreA [Enterococcus faecalis TX2134]
 gi|306510668|gb|EFM79690.1| transcription elongation factor GreA [Enterococcus faecalis TX0855]
 gi|306514843|gb|EFM83391.1| transcription elongation factor GreA [Enterococcus faecalis TX4248]
 gi|310628220|gb|EFQ11503.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO
           512]
 gi|310629859|gb|EFQ13142.1| transcription elongation factor GreA [Enterococcus faecalis TX0102]
 gi|310633692|gb|EFQ16975.1| transcription elongation factor GreA [Enterococcus faecalis TX0635]
 gi|311290625|gb|EFQ69181.1| transcription elongation factor GreA [Enterococcus faecalis DAPTO
           516]
 gi|311292480|gb|EFQ71036.1| transcription elongation factor GreA [Enterococcus faecalis TX0470]
 gi|315028152|gb|EFT40084.1| transcription elongation factor GreA [Enterococcus faecalis TX2137]
 gi|315030868|gb|EFT42800.1| transcription elongation factor GreA [Enterococcus faecalis TX4000]
 gi|315032284|gb|EFT44216.1| transcription elongation factor GreA [Enterococcus faecalis TX0017]
 gi|315036236|gb|EFT48168.1| transcription elongation factor GreA [Enterococcus faecalis TX0027]
 gi|315145421|gb|EFT89437.1| transcription elongation factor GreA [Enterococcus faecalis TX2141]
 gi|315148786|gb|EFT92802.1| transcription elongation factor GreA [Enterococcus faecalis TX4244]
 gi|315151674|gb|EFT95690.1| transcription elongation factor GreA [Enterococcus faecalis TX0012]
 gi|315154526|gb|EFT98542.1| transcription elongation factor GreA [Enterococcus faecalis TX0031]
 gi|315156395|gb|EFU00412.1| transcription elongation factor GreA [Enterococcus faecalis TX0043]
 gi|315160114|gb|EFU04131.1| transcription elongation factor GreA [Enterococcus faecalis TX0312]
 gi|315163267|gb|EFU07284.1| transcription elongation factor GreA [Enterococcus faecalis TX0645]
 gi|315165929|gb|EFU09946.1| transcription elongation factor GreA [Enterococcus faecalis TX1302]
 gi|315169337|gb|EFU13354.1| transcription elongation factor GreA [Enterococcus faecalis TX1341]
 gi|315171809|gb|EFU15826.1| transcription elongation factor GreA [Enterococcus faecalis TX1342]
 gi|315174754|gb|EFU18771.1| transcription elongation factor GreA [Enterococcus faecalis TX1346]
 gi|315576267|gb|EFU88458.1| transcription elongation factor GreA [Enterococcus faecalis
           TX0309B]
 gi|315578907|gb|EFU91098.1| transcription elongation factor GreA [Enterococcus faecalis TX0630]
 gi|315582758|gb|EFU94949.1| transcription elongation factor GreA [Enterococcus faecalis
           TX0309A]
 gi|327536067|gb|AEA94901.1| transcription elongation factor GreA [Enterococcus faecalis OG1RF]
 gi|329573310|gb|EGG54923.1| transcription elongation factor GreA [Enterococcus faecalis TX1467]
          Length = 188

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 105/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K+  +T +G +K++QEL   +  +R  I++ I  AR++GDLSEN+EY++AK+ Q   
Sbjct: 30  MVEKVYPMTLEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV 89

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LEN+I  AE+ID   +  D ++ G TV+  E   G+++ Y IVG  EAD  SG 
Sbjct: 90  EGRITTLENMIRFAEIIDNDGVDQDEVSIGKTVTFQELPDGEEEEYTIVGSAEADPFSGK 149

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK+LGD + +  PGG+ T +I +V 
Sbjct: 150 ISNDSPIAQALIGKQLGDQVIIATPGGDMTVKITKVE 186


>gi|154499802|ref|ZP_02037840.1| hypothetical protein BACCAP_03459 [Bacteroides capillosus ATCC
           29799]
 gi|150271400|gb|EDM98657.1| hypothetical protein BACCAP_03459 [Bacteroides capillosus ATCC
           29799]
          Length = 157

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 89/155 (57%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +  ++ + + +++ EL + +      +   I EAR++GDLSEN+EY  AK  Q    
Sbjct: 1   MAKEFKLSPERWKELKDELVYLKTVREKEVADQIKEARSFGDLSENSEYDEAKNEQGKLY 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+AE+ENI+    VI+     G  +  G+ + +++    ++ +Y++VG QEAD  +G +
Sbjct: 61  SRIAEVENILENCVVIEEEIHDGKTVRLGSKLKVLDVEFNEELDYEVVGSQEADPMNGRI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SP  RAL+GK +G+ + V AP G   Y++L +
Sbjct: 121 SEDSPFGRALLGKSVGEDVVVEAPAGALHYKVLSI 155


>gi|85374381|ref|YP_458443.1| transcription elongation factor [Erythrobacter litoralis HTCC2594]
 gi|84787464|gb|ABC63646.1| transcription elongation factor [Erythrobacter litoralis HTCC2594]
          Length = 159

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 83/153 (54%), Gaps = 2/153 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T  G+  ++         ERP I++ +S A   GD SEN +Y   ++     +  +A 
Sbjct: 7   PITPGGYAALKARYDRLLGTERPEIVEIVSWAAGNGDRSENGDYIYGRKRMREIDRELAH 66

Query: 66  LENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           L   +  A VI+ S     DR  FGAT++L +++   K    +VGD E D  +G +  SS
Sbjct: 67  LARRMKHARVIEPSEQPDKDRAFFGATLTLADEDDARK-TVTLVGDDEQDASAGKIGWSS 125

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+ARAL G  +GD+ +V+ P GE+ +E++ + +
Sbjct: 126 PLARALRGARVGDLRTVHLPSGEREWEVMAIAY 158


>gi|168830125|gb|ACA34353.1| transcription elongation factor [Paenibacillus polymyxa]
          Length = 165

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK + +T +G  K++ EL   +  +R  + + I  A  YGD+SEN+EY+ AK  Q   
Sbjct: 8   MSDKEVILTQEGLRKLEDELENLKSVKRREVAERIKVAIGYGDISENSEYEDAKNEQAFI 67

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE ++  A +I+   +  D +  GATV++ +   GD   Y IVG  E+D     
Sbjct: 68  EGRVITLEKMLRNARIINSDEIDTDVVGVGATVTVEDLEFGDITEYAIVGSAESDPLQNK 127

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +A++GK+ G ++ V  P G   Y+I+ + 
Sbjct: 128 ISNESPVGKAILGKKKGTVVDVTVPAGVIQYKIVDIK 164


>gi|167622182|ref|YP_001672476.1| transcription elongation factor GreB [Shewanella halifaxensis
           HAW-EB4]
 gi|167352204|gb|ABZ74817.1| transcription elongation factor GreB [Shewanella halifaxensis
           HAW-EB4]
          Length = 159

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +GF+K+Q+EL +  +E RP I K +S A + GD SENA+Y   K+     + 
Sbjct: 1   MRTAIVTREGFEKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKKKLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +V+D S     ++ FGA V +   + G+K  ++IVG  E   +   +S
Sbjct: 61  RVRYLRKTLENVQVVDYSPAQEGKVFFGAWVEIENDD-GNKLQFKIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+AR L+ KE+ D   +  P GE+ + I ++ +
Sbjct: 120 IDSPMARGLLKKEVDDEAVIKTPTGEQVWYINRISY 155


>gi|331083388|ref|ZP_08332500.1| transcription elongation factor greA [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404081|gb|EGG83629.1| transcription elongation factor greA [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 160

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 87/154 (56%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            K  +T  G  K+++EL   +  +R  + + I EAR  GDLSENAEY AAK+ Q   E R
Sbjct: 4   KKTLLTYAGLTKLEEELHDLKVNKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E I+  AEV+    +  D+I+ G  V + +    ++  ++IVG  EA+   G +S 
Sbjct: 64  IEEIEKILKNAEVVVEDEVDLDKISVGCKVKVYDVEFEEEMEFKIVGSTEANSLEGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +ALIG   GD +SV  P G   Y+IL + 
Sbjct: 124 ESPVGKALIGARKGDTVSVEMPAGVMEYKILGIE 157


>gi|328952713|ref|YP_004370047.1| GreA/GreB family elongation factor [Desulfobacca acetoxidans DSM
           11109]
 gi|328453037|gb|AEB08866.1| GreA/GreB family elongation factor [Desulfobacca acetoxidans DSM
           11109]
          Length = 159

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 94/155 (60%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+ +T +G+ K+ +EL+  ++  RPRI++ + EA A G L +N +Y  A+  Q   + 
Sbjct: 1   MPKVILTQEGYRKLLRELKHLRRIVRPRILEDVMEAAADGRLEKNDQYWEARSRQVQVDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++  L+ II ++EV+  S ++  ++ F   V +    + +   + +V   EADV+ G +S
Sbjct: 61  QIHHLQEIIAQSEVLVGSNLTASQVRFNCRVKICNVITQEISIFHLVSSIEADVRQGHLS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           I SP+ +AL+GK++G+ I  N PGG + Y++L++ 
Sbjct: 121 IESPLGQALLGKKVGERIGFNPPGGPRWYQVLEIQ 155


>gi|87199462|ref|YP_496719.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87135143|gb|ABD25885.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 182

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 80/153 (52%), Gaps = 2/153 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T  GF  ++         ERP I++ +S A   GD SEN +Y   ++     +  +A 
Sbjct: 28  PITPAGFAALRARYDHLLGTERPAIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRELAF 87

Query: 66  LENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           L   +  + V+D +      R+ FGATV + +++   K    +VGD E D   GL+  S+
Sbjct: 88  LARRMKASRVVDPARQEDRSRVLFGATVEIADEDDNRKV-LTLVGDDEQDASKGLIGWSA 146

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           PIA+AL G  +GD+  V  P G+K +EI+ + +
Sbjct: 147 PIAKALRGSRVGDLRIVRLPSGQKEWEIMAISY 179


>gi|116625760|ref|YP_827916.1| GreA/GreB family elongation factor [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116228922|gb|ABJ87631.1| GreA/GreB family elongation factor [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 164

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 56/146 (38%), Positives = 88/146 (60%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
            K+Q E+   + E    + K I +AR +GDL ENAEY AAK+ Q     R+ +L++ + +
Sbjct: 6   KKLQDEITALEYELHVDLPKEILKARLHGDLKENAEYHAAKDRQGFVSARLGQLKSRLGQ 65

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
             +ID + +  D+   G+TV +++  S  +  Y +V  +EAD  +G VS +SPI RAL+G
Sbjct: 66  LAMIDFTKIPRDKAGLGSTVVVLDVKSDQEITYHLVTSEEADAPNGKVSTTSPIGRALLG 125

Query: 133 KELGDIISVNAPGGEKTYEILQVLWI 158
           K +GD + V +PGG K  EIL++  I
Sbjct: 126 KTVGDEVKVMSPGGVKELEILKLTTI 151


>gi|330998037|ref|ZP_08321868.1| transcription elongation factor GreA [Paraprevotella xylaniphila
           YIT 11841]
 gi|329569338|gb|EGG51118.1| transcription elongation factor GreA [Paraprevotella xylaniphila
           YIT 11841]
          Length = 155

 Score =  121 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 92/152 (60%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+  +L+  +  ERP    AI+EAR  GDLSEN+EY AAKE Q + E ++ +
Sbjct: 3   YMSQEGYDKLVAQLKEMETIERPAASAAIAEARDKGDLSENSEYDAAKEHQAMLEMKINQ 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ +I  A++ID S +  D +   + V +    +  K  Y IV + EA+++ G +S+ +P
Sbjct: 63  LKAVIGDAKIIDTSKLKADTVQILSKVEMRNVKNNMKMTYTIVSETEANLKEGKISVQTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++GD+  +  P G    EI  + +
Sbjct: 123 IAQGLLGKKVGDVAEIKIPHGTVQLEITNISF 154


>gi|167769661|ref|ZP_02441714.1| hypothetical protein ANACOL_00995 [Anaerotruncus colihominis DSM
           17241]
 gi|167668022|gb|EDS12152.1| hypothetical protein ANACOL_00995 [Anaerotruncus colihominis DSM
           17241]
          Length = 151

 Score =  121 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 86/149 (57%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+D +++EL   +   R  I + I  AR +GDLSEN+EY  AK  Q + E R+ +L
Sbjct: 1   MTQEGYDALKKELNELKSVTRGEISEKIRVARGFGDLSENSEYDEAKNEQAVVEARIKKL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E+ +   ++I+   +S D ++ G+ V +++ +  ++  Y I    E+      +S  SP+
Sbjct: 61  EDQLKHVKIIERDQISTDVVSVGSRVKILDMDYDEEMVYTIASSVESHNDLESISDESPV 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
            + LIG ++GD++ ++AP      +IL++
Sbjct: 121 GKGLIGHKVGDVVEIHAPAAVLKLKILEI 149


>gi|301299802|ref|ZP_07206044.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300852615|gb|EFK80257.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 157

 Score =  121 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 5/157 (3%)

Query: 2   VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           + KI    +T  G+ +I+ E+   +  +RP  IK + EARA GDLSENAEY AAK     
Sbjct: 1   MPKIYFQKMTPNGYKQIEDEIEQLKL-DRPAKIKQLQEARALGDLSENAEYSAAKRDLRH 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+  L   +  AE+I         I    T+   +  +  +  YQIVG QE +V   
Sbjct: 60  LESRLRYLNKQLQYAEIITPKNADSVDIGTTVTIQFDDDENDLE-TYQIVGKQEVNVDDN 118

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SPI +A++ K++G   +V AP G  T +I+ +
Sbjct: 119 KISFVSPIGKAIMHKKVGHTATVVAPAGSYTVKIISI 155


>gi|70731632|ref|YP_261373.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5]
 gi|68345931|gb|AAY93537.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5]
          Length = 157

 Score =  121 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 91/158 (57%), Gaps = 2/158 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K+ +T  G+D ++QEL +  +E+RP I + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKL-ITQDGYDALKQELDYLWREKRPDITQKVTWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  +   +   +V+  +     R+ FGA V +  + +  K  ++IVG  E  ++   +
Sbjct: 60  RRVRYIRKRLEDMKVVSYAPEQEGRVFFGAWVEVENEAAEIK-RFRIVGYDEIYLRKDYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI SP+ARAL+ KE+GD   V+ P GE  + I Q+ ++
Sbjct: 119 SIDSPMARALLKKEVGDEAVVHTPAGETCWWINQIDYV 156


>gi|315652680|ref|ZP_07905655.1| transcription elongation factor GreA [Eubacterium saburreum DSM
           3986]
 gi|315485058|gb|EFU75465.1| transcription elongation factor GreA [Eubacterium saburreum DSM
           3986]
          Length = 160

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 92/157 (58%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T +G   +++EL+  +  +R  I   I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MAEKKHILTYEGLKNLEEELQDLKVNKRKEIAGKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ +LE ++  AEV+    +  D I  G  V +++K+  ++ +++IVG  EAD  +G 
Sbjct: 61  EARIEQLEALLKNAEVVVEDEVDLDTIGIGCKVKILDKDFDEELDFKIVGSTEADSLAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ +AL+GK++G+   V    G   Y +L++ 
Sbjct: 121 ISNESPLGKALLGKKIGETAEVETQAGVSEYMVLEIQ 157


>gi|113972137|ref|YP_735930.1| transcription elongation factor GreB [Shewanella sp. MR-4]
 gi|113886821|gb|ABI40873.1| transcription elongation factor GreB [Shewanella sp. MR-4]
          Length = 167

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+  + +EL++  +E RP+I   + EA A GD SENA+Y   K L    + 
Sbjct: 1   MKAHLITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     +I FGA   L  +    +  Y+IVG  E D + G ++
Sbjct: 61  RVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELENEAGE-RVRYRIVGKDELDTKLGYIT 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALIGK++ D + V  P G K + I  + +
Sbjct: 120 IDSPMARALIGKQVDDEVVVQTPSGPKEWYINDIRY 155


>gi|302672112|ref|YP_003832072.1| transcription elongation factor GreA/GreB1 [Butyrivibrio
           proteoclasticus B316]
 gi|302396585|gb|ADL35490.1| transcription elongation factor GreA/GreB1 [Butyrivibrio
           proteoclasticus B316]
          Length = 161

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 84/154 (54%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            K  +T +G  K + EL   +  +R  + + I EAR  GDLSENAEY AAK+ Q   E R
Sbjct: 4   KKNILTYEGLKKYEDELHELKVVKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  LE I+  AEV+    +  ++I+ G  V + +    ++  Y+IVG  EA+   G +S 
Sbjct: 64  IEALEKILKNAEVVVEEDVDLNKISIGCKVKIKDLEFDEELEYKIVGSSEANSLKGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +ALIG + G  +SV    G   Y++L + 
Sbjct: 124 ESPVGKALIGAKKGQTVSVETQAGVIKYKVLSIE 157


>gi|153813031|ref|ZP_01965699.1| hypothetical protein RUMOBE_03439 [Ruminococcus obeum ATCC 29174]
 gi|149830833|gb|EDM85923.1| hypothetical protein RUMOBE_03439 [Ruminococcus obeum ATCC 29174]
          Length = 160

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 83/154 (53%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            K  +T  G  K++ EL   +  +R  +   I EAR  GDLSENAEY AAK+ Q   E R
Sbjct: 4   KKNLLTYAGLKKLEDELHDLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E I+  AEV+    +  D+I  G  V + +    +    +IVG  EA+   G +S 
Sbjct: 64  IEEIEKILKNAEVVVEDEVDLDKINVGCKVKVHDYEFDEDMELKIVGSTEANSLEGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +ALIG   GD++ V  P G   Y++L++ 
Sbjct: 124 ESPVGKALIGAHTGDVVDVEMPMGIMKYKVLEIQ 157


>gi|284046269|ref|YP_003396609.1| transcription elongation factor GreA [Conexibacter woesei DSM
           14684]
 gi|283950490|gb|ADB53234.1| transcription elongation factor GreA [Conexibacter woesei DSM
           14684]
          Length = 154

 Score =  120 bits (301), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 80/155 (51%), Gaps = 3/155 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D   +T +G D ++ EL   +   R  I   I  AR +GDL ENAEY AAKE Q   E
Sbjct: 1   MTDGYAITQEGLDALRAELEQLETVARREIAARIRTAREWGDLKENAEYHAAKEDQAHLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ +L      A V + S+       FG+TV +  +  G    Y +VG  EA  + G +
Sbjct: 61  TRILKLRERERNATVTEASSDVDIVA-FGSTVEV--ETGGKNARYTLVGAAEASARDGKL 117

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SI SP+ARALIG   G+ + V  P G +   +++V
Sbjct: 118 SIESPVARALIGARAGEDVQVQTPSGARILRVVRV 152


>gi|257869644|ref|ZP_05649297.1| prokaryotic transcription elongation factor GreA [Enterococcus
           gallinarum EG2]
 gi|257803808|gb|EEV32630.1| prokaryotic transcription elongation factor GreA [Enterococcus
           gallinarum EG2]
          Length = 159

 Score =  120 bits (301), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 106/157 (67%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K+  +T +G +K++QEL   +  +R  II+ I  AR++GDLSEN+EY++AK+ Q   
Sbjct: 1   MVEKVYPMTLEGKEKLEQELEELKTVKRGEIIERIKVARSFGDLSENSEYESAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LEN+I  AE+ID   +  D ++ G TV+ +E   GD++ Y IVG  EAD  SG 
Sbjct: 61  EGRITTLENMIRFAEIIDNEGVDNDEVSIGKTVTFIELPDGDEEEYTIVGSAEADPFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIARALIGK++ D ++++ PGG+   +I +V 
Sbjct: 121 ISNDSPIARALIGKKINDEVTISTPGGDMLVKITEVK 157


>gi|119478768|ref|ZP_01618607.1| transcription elongation factor GreB [marine gamma proteobacterium
           HTCC2143]
 gi|119448347|gb|EAW29602.1| transcription elongation factor GreB [marine gamma proteobacterium
           HTCC2143]
          Length = 167

 Score =  120 bits (301), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 80/152 (52%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G   ++ E+    + ERP +   + EA   GD SEN +Y   K      + R+  
Sbjct: 14  YITPEGEKALRAEVYQLWKIERPEVTAVVHEAAKNGDRSENGDYIYGKRRMREIDSRVRF 73

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +   E++D +    D I FGA V++ ++    K++Y+IVG  E D+ S  +S+ SP
Sbjct: 74  LTKRLDSVEIVDRTPADKDIIYFGAWVTVEDEAES-KQSYRIVGPDEFDLASNKLSMDSP 132

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +A+AL+GK + D I    P G++   I +V +
Sbjct: 133 LAKALLGKRVEDEILFKTPEGQRELYISEVWY 164


>gi|157963827|ref|YP_001503861.1| transcription elongation factor GreB [Shewanella pealeana ATCC
           700345]
 gi|157848827|gb|ABV89326.1| transcription elongation factor GreB [Shewanella pealeana ATCC
           700345]
          Length = 159

 Score =  120 bits (301), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +GF+K+Q+EL +  +E RP I K +S A + GD SENA+Y   K      + 
Sbjct: 1   MRTAIVTREGFEKLQKELNYLWREHRPEITKIVSWAASLGDRSENADYTFNKRKLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +V+D S     ++ FGA V +   + G+K  ++IVG  E   +   +S
Sbjct: 61  RVRYLRKTLENVQVVDYSPAQEGKVFFGAWVEIENDD-GNKLAFKIVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+AR L+ KE+ D   +  P GE+ + I ++ +
Sbjct: 120 IDSPMARGLLKKEVDDEAVIKTPTGEQVWYINRISY 155


>gi|295110734|emb|CBL24687.1| transcription elongation factor GreA [Ruminococcus obeum A2-162]
          Length = 160

 Score =  120 bits (301), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 86/154 (55%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            K  +T  G  K++ EL   +  +R  + + I EAR  GDLSENAEY AAK+ Q   E R
Sbjct: 4   KKNLLTYAGLKKLEDELHDLKVVKRKEVAEKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E I+  AEV+    +  DRI+ G  V + +    ++   ++VG  EA+   G +S 
Sbjct: 64  IEEIEKILKNAEVVVEDEVDLDRISVGCKVKVYDYEFEEEMELKLVGSTEANSLEGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +ALIG   GD++ V  P G   Y++L++ 
Sbjct: 124 ESPVGKALIGAHTGDVVEVEMPMGIMKYKVLEIQ 157


>gi|291166186|gb|EFE28232.1| transcription elongation factor GreA [Filifactor alocis ATCC 35896]
          Length = 161

 Score =  120 bits (301), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 88/154 (57%), Gaps = 2/154 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           ++  +T  G+ KI++EL + +   R  + + I  A ++GD+SENAEY  AK  Q   E R
Sbjct: 9   EEALITQSGYQKIEEELEYLKATRRLEVAERIKVALSFGDISENAEYDEAKNEQAQLEER 68

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +++LENI+  A ++D S +  D +  G+ V L  +   ++  Y IVG  E+D  S  +S 
Sbjct: 69  ISKLENILRTAVIVDESKLEHDVVNIGSWVKLDYEGEIEE--YTIVGSAESDPSSSKISN 126

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +PI +AL+G+  G+ I V  P G    +IL+V 
Sbjct: 127 EAPIGKALMGRREGESIEVQVPNGVVNIKILEVR 160


>gi|24376104|ref|NP_720147.1| transcription elongation factor GreB [Shewanella oneidensis MR-1]
 gi|24351133|gb|AAN57591.1|AE015894_11 transcription elongation factor GreB [Shewanella oneidensis MR-1]
          Length = 167

 Score =  120 bits (301), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 84/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+  + +EL++  +E RP+I   + EA A GD SENA+Y   K L    + 
Sbjct: 1   MKAHLITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADYTYNKRLLRQIDS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     +I FGA   L       +  Y+IVG  E D + G ++
Sbjct: 61  RVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELENDAGE-RVRYRIVGKDELDTKLGYIT 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALIGK++ D + V  P G K + I ++ +
Sbjct: 120 IDSPMARALIGKQVDDEVVVQTPSGPKAWYINEIRY 155


>gi|217976361|ref|YP_002360508.1| transcription elongation factor GreB [Methylocella silvestris BL2]
 gi|217501737|gb|ACK49146.1| transcription elongation factor GreB [Methylocella silvestris BL2]
          Length = 181

 Score =  120 bits (301), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 81/155 (52%), Gaps = 2/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +G  ++Q E     + ERP+I++ ++ A   GD SEN +Y   K      + RM
Sbjct: 28  KNYITPEGLRRMQDEFDRLHRIERPKIVETVTWAAGNGDRSENGDYIYGKRRLREIDRRM 87

Query: 64  AELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   +  AEV+D +   + DR+ FGA V      +  K   +IVG  EA  +   VS 
Sbjct: 88  RFLRKRMEIAEVVDPARQTNRDRVFFGAKVEYRNARNEMK-TLRIVGVDEARSELSEVSW 146

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SPIA++L+  E GD++ V  P G +  EI+++ +
Sbjct: 147 ISPIAKSLLKAEEGDVVEVKTPKGTERIEIVKISY 181


>gi|160939909|ref|ZP_02087256.1| hypothetical protein CLOBOL_04800 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437343|gb|EDP15108.1| hypothetical protein CLOBOL_04800 [Clostridium bolteae ATCC
           BAA-613]
          Length = 160

 Score =  120 bits (301), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK   +T  G  + + EL+  +  +R  + + I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MADKKHILTYAGLKQYEDELQNLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ ELE ++  AEV+    +  D+I  G  V L++    ++  + IVG  EA+     
Sbjct: 61  ELRIEELEKLLKNAEVVVEDEIDLDKINIGCKVKLLDVEYDEEMEFYIVGSTEANSLQNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+ RALIGK +G+ + V    G+  Y++L++ 
Sbjct: 121 ISNESPVGRALIGKVVGECVDVETQAGDIQYKVLEIQ 157


>gi|330965418|gb|EGH65678.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 157

 Score =  120 bits (301), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 87/157 (55%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T  G + +++EL +  +E RP I + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKI-ITQGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V+  S     R+ FGA V +  +    K  +++VG  E   ++  +
Sbjct: 60  RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIENEAGDLK-KFRVVGYDEIYGRNDYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE GD + VN P GEK + +  +++
Sbjct: 119 SIDSPMARALLKKEAGDEVLVNTPEGEKLWFVNSIVY 155


>gi|291520868|emb|CBK79161.1| transcription elongation factor GreA [Coprococcus catus GD/7]
          Length = 160

 Score =  120 bits (301), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T  G   ++ EL   +  +R  + + I EAR  GDLSENAEY AAK+ Q  
Sbjct: 1   MAETKKNIMTFAGLRALEDELFDLKVYKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRD 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ELE ++   EV+    +  D +  G+ V L +    ++  Y IVG  EAD  +G
Sbjct: 61  IEARIEELEKLLKNVEVVGQDEVDADTVGIGSRVKLYDVEMDEEVEYTIVGSTEADALNG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+  ALIG ++G+ I V    G+  ++IL++
Sbjct: 121 KISNESPVGAALIGSKVGETIVVETISGDLEFKILEI 157


>gi|282859825|ref|ZP_06268919.1| putative transcription elongation factor GreA [Prevotella bivia
           JCVIHMP010]
 gi|282587445|gb|EFB92656.1| putative transcription elongation factor GreA [Prevotella bivia
           JCVIHMP010]
          Length = 156

 Score =  120 bits (301), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 92/150 (61%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+ ++L+  +  ERP+   AI+EA   GDLSEN+EY AAKE Q   E ++ E
Sbjct: 3   YMSQEGYDKLVEDLKQLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEAKILE 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           ++  +  A+++D S +S D +   +TV +   ++  K  Y IV + EA+++ G +SI +P
Sbjct: 63  MKMTLAEAKIVDTSRLSTDAVQIMSTVEMTNVDNQTKMKYTIVSETEANIKQGKISIKTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+ K++GD+  +  P G     I ++
Sbjct: 123 IAQGLLNKKVGDVAEITIPRGTIKLRIDKI 152


>gi|299144545|ref|ZP_07037624.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298517633|gb|EFI41373.1| transcription elongation factor GreA [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 158

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 55/156 (35%), Positives = 92/156 (58%), Gaps = 1/156 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K I  T++G +KI+ E+ + +   R  + + I  A  YGDLSEN+EY  AK  Q   
Sbjct: 1   MVEKDIFFTAEGLEKIESEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ +LE ++  A+VI  + ++ D +  G+TV + + + G+++ + IVG  EAD   G 
Sbjct: 61  EERIVKLETMVRNAKVISETDLNTDVVNIGSTVKVKDLSDGEEEEFLIVGSAEADPLEGR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SP+   LIG ++G++  V  P G   YE++ +
Sbjct: 121 ISNESPVGGKLIGLKIGEVAEVEVPDGIIKYEVVGI 156


>gi|302327668|gb|ADL26869.1| transcription elongation factor, GreA/GreB family [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 155

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 58/154 (37%), Positives = 89/154 (57%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  ++ +GF+K + E    +  ERP +I  +  A A GD SENA Y   +      + R+
Sbjct: 2   KHLISKEGFEKFKAEWEHLKYVERPAMINQVQAAAAEGDRSENAAYTYGRMRVREIDRRL 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            EL+ I+  A++++ +      I FGATV +++K +  +K Y IVGD+E D   G +S+ 
Sbjct: 62  RELDRILDGAQIVENAATKDGSIRFGATVKMIDKKTKREKIYSIVGDKEIDPLQGRISMK 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPI  AL GK+ GD + V AP G+  YEIL+V +
Sbjct: 122 SPIGEALQGKKAGDTVEVQAPRGKIVYEILEVNY 155


>gi|94971605|ref|YP_593653.1| GreA/GreB family elongation factor [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553655|gb|ABF43579.1| GreA/GreB family elongation factor [Candidatus Koribacter
           versatilis Ellin345]
          Length = 212

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 77/158 (48%), Gaps = 5/158 (3%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G ++++ E R+    ERP +++ +  A   GD S+NA+Y+  K      +GR+
Sbjct: 19  KNYITPGGLERLKDEHRFLLTRERPAVVEVVQWAAGNGDRSDNADYRYGKRRLRQIDGRI 78

Query: 64  AELENIITRAEVIDISTMSG----DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
             L   I  AE++D           R  FGATV       G ++   IVG  E D+    
Sbjct: 79  RFLSKRIEAAELVDPERPRTGQAATRAFFGATVRYENAA-GVERVVSIVGVDEVDLSRNH 137

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +S  SP+ RAL     GD + + APGG +   +L+V +
Sbjct: 138 ISWMSPLGRALTKSAEGDSVVLKAPGGTEELTVLEVRY 175


>gi|145309060|gb|ABP57740.1| transcription elongation factor GreB [Chromobacterium violaceum]
          Length = 190

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 78/156 (50%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T  G+ +++ EL      ERP +++ ++ A + GD SEN +Y   K      + 
Sbjct: 31  STKNYITPGGWQRLKDELYHLVNRERPEMVQVVNWAASNGDRSENGDYLYGKRRLREIDR 90

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +  AEV+D  T       F +   L+E+  G ++  +IVG  E D+  G +S
Sbjct: 91  RIRFLTKRLEIAEVVDPETREATDQVFFSATVLIERGDGSEQLLRIVGVDEIDLARGHIS 150

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SPIAR L+    GD +    P G++  E+L+V +
Sbjct: 151 WISPIARTLLKAREGDSVLFRGPDGDEDIEVLEVRY 186


>gi|270291043|ref|ZP_06197266.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4]
 gi|304385319|ref|ZP_07367664.1| transcription elongation factor GreA [Pediococcus acidilactici DSM
           20284]
 gi|270280439|gb|EFA26274.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4]
 gi|304328526|gb|EFL95747.1| transcription elongation factor GreA [Pediococcus acidilactici DSM
           20284]
          Length = 154

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/151 (40%), Positives = 89/151 (58%), Gaps = 3/151 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           +P+T  G+ KIQQE+   ++  RP +IKA+++ARA GDLSENAEY AAK      EGR+ 
Sbjct: 6   VPMTKTGYQKIQQEIADLKKT-RPGLIKALADARALGDLSENAEYSAAKRDLRRMEGRLR 64

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE  I  +++++       +I  G+ V+L   +      Y+IVG  EADV    VS  S
Sbjct: 65  YLERQINYSKIVE--NTDRTKIDLGSNVTLRFLDDDFTVTYEIVGKHEADVAQQKVSYQS 122

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+  AL+   L D+++VNAP  +   EIL +
Sbjct: 123 PLGAALLHHHLHDVVTVNAPDEQYQVEILAI 153


>gi|239997048|ref|ZP_04717572.1| transcription elongation factor GreB [Alteromonas macleodii ATCC
           27126]
          Length = 161

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 83/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T KG+ K++QEL +  +EERP I + ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITRKGYLKLKQELDFLWREERPEITRKVTWAASLGDRSENADYQYNKKKLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +V+D  +    ++ FGA V +  +  G     ++VG  E   +   +S
Sbjct: 61  RVRYLRKCLENLKVVDYDSQQEGKVFFGAWVEIENEA-GKVMELRLVGYDEIFGRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+GKE  D   V    G K + I ++ +
Sbjct: 120 IDSPMARALLGKEEDDEFVVKTETGTKEWWINRIWY 155


>gi|169830348|ref|YP_001716330.1| transcription elongation factor GreA [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637192|gb|ACA58698.1| transcription elongation factor GreA [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 163

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 90/150 (60%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G  K+++EL + +  +R  + + I +A  +GD+++++EY+ AK  Q   EGR+  L
Sbjct: 10  LTVAGLRKLERELEYLKMVKRREVAERIKQAIEFGDITDSSEYEDAKNEQAFIEGRIITL 69

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E  +  A+VID   +  + +  G+TV L + N G++  Y IVG  E+D +S  +S  SP+
Sbjct: 70  EKALRNAKVIDAEDVGTEEVGIGSTVRLKDLNGGEELQYTIVGSMESDPRSNKISDESPV 129

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            RA++G+ +G+I+ +  P G   Y+I+ + 
Sbjct: 130 GRAMLGQRVGNIVEIQVPAGTLKYQIIDIT 159


>gi|257486310|ref|ZP_05640351.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|298486552|ref|ZP_07004612.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159029|gb|EFI00090.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|330888219|gb|EGH20880.1| transcription elongation factor GreB [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330988435|gb|EGH86538.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331010600|gb|EGH90656.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 157

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T  G + +++EL +  +E RP I + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKI-ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V+  S     R+ FGA V +  +    K  ++IVG  E   ++  +
Sbjct: 60  RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIENEAGDLK-KFRIVGYDEIYGRNDYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE GD + VN P GEK + +  + +
Sbjct: 119 SIDSPMARALLKKEEGDEVLVNTPEGEKLWFVNSIDY 155


>gi|330951745|gb|EGH52005.1| transcription elongation factor GreB [Pseudomonas syringae Cit 7]
          Length = 157

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T  G + +++EL +  +E RP I + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKI-ITRDGHEALKKELDYLGREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V+  S     R+ FGA V +  +    K  ++IVG  E   ++  +
Sbjct: 60  RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIENEAGDLK-KFRIVGYDEIYGRNDYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+GD + VN P GEK + +  + +
Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIDY 155


>gi|254283435|ref|ZP_04958403.1| transcription elongation factor GreB [gamma proteobacterium
           NOR51-B]
 gi|219679638|gb|EED35987.1| transcription elongation factor GreB [gamma proteobacterium
           NOR51-B]
          Length = 168

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G   ++ EL+   +EERP +  A+  A   GD SEN +Y   K+     + R+  
Sbjct: 14  YITPEGEAALRAELQALWKEERPVVTAAVQAAAGNGDRSENGDYIYGKKRLREIDSRVRF 73

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +    V+        +  FGA V L   +   +  +++VG  E D+Q+G +S  SP
Sbjct: 74  LRKRLEELTVVRDPPSDRGKAYFGAWVDLENPDGE-RVTWRVVGPDEFDLQAGKLSCDSP 132

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + RAL+GK +   I++++P G++ + +L V +
Sbjct: 133 LGRALLGKPIDSEITIDSPSGDQYWYLLDVRY 164


>gi|300214037|gb|ADJ78453.1| Transcription elongation factor [Lactobacillus salivarius CECT
           5713]
          Length = 157

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 5/157 (3%)

Query: 2   VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           + KI    +T  G+ +I+ E+   +  +RP  IK + EARA GDLSENAEY AAK     
Sbjct: 1   MPKIYFQKMTPNGYKQIEDEIEQLKL-DRPAKIKQLQEARALGDLSENAEYSAAKRDLRH 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+  L   +  AE+I         I    T+   +  +  +  YQIVG QE +V   
Sbjct: 60  LESRLRYLNKQLQYAEIITPKNADSVDIGTTVTIQFDDDENDLE-TYQIVGKQEVNVDDN 118

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SPI +A++ K++G   +V AP G  T +I+ +
Sbjct: 119 KISFVSPIGKAIMHKKVGHTATVVAPTGSYTVKIISI 155


>gi|28896926|ref|NP_796531.1| transcription elongation factor GreB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837875|ref|ZP_01990542.1| transcription elongation factor GreB [Vibrio parahaemolyticus
           AQ3810]
 gi|260365887|ref|ZP_05778381.1| transcription elongation factor GreB [Vibrio parahaemolyticus
           K5030]
 gi|260877826|ref|ZP_05890181.1| transcription elongation factor GreB [Vibrio parahaemolyticus
           AN-5034]
 gi|260895525|ref|ZP_05904021.1| transcription elongation factor GreB [Vibrio parahaemolyticus
           Peru-466]
 gi|260902549|ref|ZP_05910944.1| transcription elongation factor GreB [Vibrio parahaemolyticus
           AQ4037]
 gi|31076677|sp|Q87TB8|GREB_VIBPA RecName: Full=Transcription elongation factor greB; AltName:
           Full=Transcript cleavage factor greB
 gi|28805134|dbj|BAC58415.1| transcription elongation factor GreB [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748738|gb|EDM59583.1| transcription elongation factor GreB [Vibrio parahaemolyticus
           AQ3810]
 gi|308088536|gb|EFO38231.1| transcription elongation factor GreB [Vibrio parahaemolyticus
           Peru-466]
 gi|308089794|gb|EFO39489.1| transcription elongation factor GreB [Vibrio parahaemolyticus
           AN-5034]
 gi|308109683|gb|EFO47223.1| transcription elongation factor GreB [Vibrio parahaemolyticus
           AQ4037]
 gi|308113424|gb|EFO50964.1| transcription elongation factor GreB [Vibrio parahaemolyticus
           K5030]
 gi|328471701|gb|EGF42578.1| transcription elongation factor GreB [Vibrio parahaemolyticus
           10329]
          Length = 163

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 83/157 (52%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++QE  +   E+RP I K ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITREGYNKLKQEHDYLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +    ++D S     ++ FGA V +  +    K  ++IVG +E        +
Sbjct: 61  RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIENEAGDVK-KFRIVGPEEIYGDAKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARA++ K++ +  +V  P G+K + I  + +
Sbjct: 120 SIDSPMARAMLKKQVDEEFTVRTPEGDKEWFINSIEY 156


>gi|169829310|ref|YP_001699468.1| transcription elongation factor GreA [Lysinibacillus sphaericus
           C3-41]
 gi|168993798|gb|ACA41338.1| Transcription elongation factor greA (Transcript cleavage factor
           greA) [Lysinibacillus sphaericus C3-41]
          Length = 154

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 59/154 (38%), Positives = 93/154 (60%), Gaps = 4/154 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T++G  K+++EL   + E R  I++ I  AR +GDLSENAEY +AKE Q   EGR++ L
Sbjct: 1   MTAEGKRKLEEELVKLETETRKEIVERIKIARDFGDLSENAEYDSAKEEQAFLEGRISTL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVE----KNSGDKKNYQIVGDQEADVQSGLVSI 122
           +++I  A +I         ++ G TV+ VE    K S ++++Y IVG  EAD     +S 
Sbjct: 61  KSMIRNAVIISEDETDNSVVSLGKTVTFVEIINGKPSTEEESYTIVGSAEADPMEFRISN 120

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SPIA+ L+G+  G+ ++V  PGGE   +I+ + 
Sbjct: 121 ESPIAKGLLGRAEGEEVAVQTPGGEMKVKIVSIK 154


>gi|307295011|ref|ZP_07574853.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum
           L-1]
 gi|306879485|gb|EFN10703.1| GreA/GreB family elongation factor [Sphingobium chlorophenolicum
           L-1]
          Length = 160

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 87/154 (56%), Gaps = 2/154 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T +GF K++ E       ERP+I++ +S A   GD SEN +Y   ++     +G++ 
Sbjct: 6   NYITPEGFAKLRAEYDQLLGHERPKIVEVVSWAAGNGDRSENGDYLYGRKRMREIDGQLK 65

Query: 65  ELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            L   +  A+V+D        ++ FGATV++ +++   ++   +VG+ E +  +G +  S
Sbjct: 66  RLSRKMKDAKVVDPRQQPDKSKVYFGATVTIADEDDK-RRTVTLVGNDETEASAGRIGWS 124

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +PIARAL G  +GD+  V  P GEK YE++++ +
Sbjct: 125 TPIARALRGAAVGDLRRVILPAGEKEYEVMEIRY 158


>gi|90961105|ref|YP_535021.1| transcription elongation factor GreA [Lactobacillus salivarius
           UCC118]
 gi|90820299|gb|ABD98938.1| Transcription elongation factor [Lactobacillus salivarius UCC118]
          Length = 157

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 5/157 (3%)

Query: 2   VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           + KI    +T  G+ +I+ E+   +  +RP  IK + EARA GDLSENAEY AAK     
Sbjct: 1   MPKIYFQKMTPNGYKQIEDEIEQLKL-DRPAKIKQLQEARALGDLSENAEYSAAKRDLRH 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+  L   +  AE+I         I    T+   +  +  +  YQIVG QE +V   
Sbjct: 60  LESRLRYLNKQLQYAEIITPKNADSVDIGTTVTIQFDDDENDLE-TYQIVGKQEVNVDDN 118

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SPI +A++ K++G   +V AP G  T +I+ +
Sbjct: 119 KISFVSPIGKAIMHKKVGHTATVIAPAGSYTVKIISI 155


>gi|225619028|ref|YP_002720254.1| transcription elongation factor GreA [Brachyspira hyodysenteriae
           WA1]
 gi|225213847|gb|ACN82581.1| transcription elongation factor GreA [Brachyspira hyodysenteriae
           WA1]
          Length = 154

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 57/150 (38%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T +G+DK + +L   +  E   +   I+EAR  GDL ENAEY AAKE Q L   ++++
Sbjct: 4   PITKEGYDKAKSKLADLKA-EFETLPAIIAEAREKGDLKENAEYHAAKEKQGLLNAQISK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE+ +   E+ID + +  D + FG  V + +K+      Y+IVG+ EAD+    ++I +P
Sbjct: 63  LESDLAGCEIIDPANLDKDTVTFGKRVKVKDKSRNAVFEYRIVGELEADMSKNEITIVTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+GK++GD++++  P G+K  EIL++
Sbjct: 123 IAKGLLGKKIGDVVTIKVPAGDKVLEILEI 152


>gi|78776745|ref|YP_393060.1| GreA/GreB family elongation factor [Sulfurimonas denitrificans DSM
           1251]
 gi|78497285|gb|ABB43825.1| GreA/GreB family elongation factor [Sulfurimonas denitrificans DSM
           1251]
          Length = 174

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 97/154 (62%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           + P++ +G+D + +E ++  + E+P+  +    A A GD SENA+YQAAKE     + R+
Sbjct: 2   QEPMSIEGYDVLIEEFKFLLEVEKPKTAQEKLVAAALGDRSENADYQAAKEKLRHIDKRL 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L  +I +A +ID ST+   +++FG++V +++  S  ++ Y I G  E++ ++GL+SI 
Sbjct: 62  FYLNAMIQKAHIIDPSTLLHTKVSFGSSVRILDLESDKEEVYTICGVLESEPENGLISIH 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+A+ ++GK + D   +  P  +K YEIL++ +
Sbjct: 122 SPLAQVMLGKRVSDEFKIQLPLMKKEYEILEIYY 155


>gi|153212566|ref|ZP_01948313.1| transcription elongation factor GreB [Vibrio cholerae 1587]
 gi|124116437|gb|EAY35257.1| transcription elongation factor GreB [Vibrio cholerae 1587]
          Length = 160

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G++K++QEL +  +E+RP I + +S A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENADYTYNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L  ++   +++D S     ++ FGA V +  +    K  ++IVG +E        +
Sbjct: 61  RVRFLSKLLPELKIVDYSPQQEGKVFFGAWVEIENEAGEVK-KFRIVGPEEIYGDAKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ K++ +   V+ P G K + I  + +
Sbjct: 120 SIDSPMARALLKKQVDEEFQVHTPMGMKEWFINSIEY 156


>gi|332143379|ref|YP_004429117.1| transcription elongation factor GreB [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553401|gb|AEB00120.1| transcription elongation factor GreB [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 161

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T KG+ K++QEL +  +EERP I + ++ A + GD SENA+YQ  K+     + 
Sbjct: 1   MKTPLITRKGYLKLKQELDFLWREERPEITRKVTWAASLGDRSENADYQYNKKKLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +V+D       ++ FGA V +  +  G     ++VG  E   +   +S
Sbjct: 61  RVRYLRKCLENLKVVDYDPQQEGKVFFGAWVEIENEA-GKVMELRLVGYDEIFGRRDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARALIGKE  D   V    G K + I ++ +
Sbjct: 120 IDSPMARALIGKEEDDEFVVKTETGTKEWWINRIWY 155


>gi|307565015|ref|ZP_07627532.1| putative transcription elongation factor GreA [Prevotella amnii
           CRIS 21A-A]
 gi|307346328|gb|EFN91648.1| putative transcription elongation factor GreA [Prevotella amnii
           CRIS 21A-A]
          Length = 156

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 92/150 (61%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+ ++L+  +  ERP+   AI+EA   GDLSEN+EY AAKE Q   E ++ E
Sbjct: 3   YMSQEGYDKLVEDLKQLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEAKILE 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           ++  +  A+++D S +S + +   +TV +   ++  K  Y IV + EA+++ G +SI +P
Sbjct: 63  MKKTLAEAKIVDTSRLSTEAVQILSTVEMTNIDNQTKMTYTIVSETEANIKQGKISIKTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+ K++GDI  +  P G     I ++
Sbjct: 123 IAQGLLNKKVGDIAEITIPRGTIKLRIDKI 152


>gi|227892405|ref|ZP_04010210.1| transcription elongation factor GreA [Lactobacillus salivarius ATCC
           11741]
 gi|227865812|gb|EEJ73233.1| transcription elongation factor GreA [Lactobacillus salivarius ATCC
           11741]
          Length = 157

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 82/157 (52%), Gaps = 5/157 (3%)

Query: 2   VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           + KI    +T  G+ +I+ E+   +  +RP  IK + EARA GDLSENAEY AAK     
Sbjct: 1   MPKIYFQKMTPNGYKQIEDEIEQLKL-DRPAKIKQLQEARALGDLSENAEYSAAKRDLRH 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+  L   +  AE+I         I    T+   +  +  +  YQIVG QE +V   
Sbjct: 60  LESRLRYLNKQLQYAEIITPKNADSVDIGTTVTIQFDDDENDLE-TYQIVGKQEVNVDDN 118

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SPI +A++ K++G   ++ AP G  T +I+ +
Sbjct: 119 KISFVSPIGKAIMHKKVGHTATIVAPAGSYTVKIISI 155


>gi|238926931|ref|ZP_04658691.1| elongation factor GreA [Selenomonas flueggei ATCC 43531]
 gi|238885165|gb|EEQ48803.1| elongation factor GreA [Selenomonas flueggei ATCC 43531]
          Length = 156

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 3/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T  G++K+ ++L + +   R  I + +  A A GDLSEN+EY  AK  Q   
Sbjct: 1   MAEKKVMLTEDGYNKLVEKLNYLKSVRRIEIAERLKAAIALGDLSENSEYDDAKNEQAFL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG + ELEN I  +++I         +  G+ V++ +    +++ + IVG  EAD   G 
Sbjct: 61  EGEIQELENKIRNSDIIKAGDG--KTVTMGSRVTVKDLEFDEEETFLIVGSTEADPDEGK 118

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  AL+G+++G  I+VNAP G   Y+I+ + 
Sbjct: 119 ISNESPLGEALLGQKIGRTINVNAPAGVIQYKIIDIK 155


>gi|310658260|ref|YP_003935981.1| transcription elongation factor [Clostridium sticklandii DSM 519]
 gi|308825038|emb|CBH21076.1| transcription elongation factor [Clostridium sticklandii]
          Length = 164

 Score =  120 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/158 (35%), Positives = 88/158 (55%), Gaps = 4/158 (2%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            +I +T +GF KI+ EL   +   R  + + I  A ++GD+SEN+EY  AK  Q   E R
Sbjct: 6   KEILLTEEGFKKIEDELELLKTVRRKEVAERIKVAISFGDISENSEYDEAKNEQAQLEER 65

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEK----NSGDKKNYQIVGDQEADVQSG 118
           + +LENI+  A +ID S++  + +  G+ V +  K    +  ++  Y IVG  EAD    
Sbjct: 66  ILKLENILRVAVIIDESSIDTNLVTVGSVVKIEFKDALTDEVEEDEYTIVGSAEADPSES 125

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPI +AL+G+ +GD I V  P G    +IL++ 
Sbjct: 126 KISNESPIGKALLGRVVGDEIDVQVPDGISKIKILEIR 163


>gi|71734764|ref|YP_274255.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555317|gb|AAZ34528.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320329094|gb|EFW85092.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 157

 Score =  120 bits (300), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T  G + +++EL +  +E RP I + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKI-ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V+  S     R+ FGA V +  +    K  ++IVG  E   ++  +
Sbjct: 60  RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIENEAGDLK-KFRIVGYDEIYGRNDYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE GD + VN P GEK + +  +++
Sbjct: 119 SIDSPMARALLKKEEGDEVLVNTPEGEKLWFVNSIVY 155


>gi|291530006|emb|CBK95591.1| transcription elongation factor GreA [Eubacterium siraeum 70/3]
          Length = 156

 Score =  119 bits (299), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 94/155 (60%), Gaps = 1/155 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +  +TS+G   +++ L   +   R  I + I  A ++GDLSEN+EY  AK  Q + E
Sbjct: 1   MATQTTLTSQGLKDLEERLEHLKSVTRKEIAEKIKVALSFGDLSENSEYDEAKNEQGIVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             +AE+E  +  A+V+D   +S + +  G TV + +++ G K  + +VG +E D+++  +
Sbjct: 61  AEIAEIEATLKNAKVVDEDELSTEHVNIGNTVVIEDES-GKKIKFFLVGSKEVDMKAMKI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SPI +A IGK+LG+ +SV AP G K Y+I+++
Sbjct: 120 SDESPIGKACIGKKLGEEVSVEAPAGVKKYKIVEI 154


>gi|260593365|ref|ZP_05858823.1| transcription elongation factor GreA [Prevotella veroralis F0319]
 gi|260534641|gb|EEX17258.1| transcription elongation factor GreA [Prevotella veroralis F0319]
          Length = 156

 Score =  119 bits (299), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 93/150 (62%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+  +L++ +  ERP+   AI+EA   GDLSEN+EY AAKE Q   E R+AE
Sbjct: 3   YMSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAE 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           ++  + +A+++D+S +S + +   +TV +    +  K  Y IV + EA+++   +SI +P
Sbjct: 63  MKMTVAQAKIVDVSRLSTEAVQIMSTVEMTNVKTKAKMKYTIVSETEANLKQNKISIKTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+ K++GD + +  P G     I ++
Sbjct: 123 IAQGLLNKKVGDEVEITIPRGTIKLRIDKI 152


>gi|237797206|ref|ZP_04585667.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020056|gb|EGI00113.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 157

 Score =  119 bits (299), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T  G + +++EL +  +E RP I + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKI-ITRDGHEALKKELDYLWREHRPDITRKVTWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V+  S     R+ FGA V +  +    K  ++IVG  E   ++  +
Sbjct: 60  RRVRYLRKRLEDMRVVLYSPEQEGRVFFGAWVEIENEEGDLK-KFRIVGYDEIYGRNDYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+GD + VN P GEK + +  +++
Sbjct: 119 SIDSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIVY 155


>gi|312882877|ref|ZP_07742609.1| transcription elongation factor GreB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369396|gb|EFP96916.1| transcription elongation factor GreB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 162

 Score =  119 bits (299), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 79/157 (50%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++ E  +   E RP + K ++ A   GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITREGYNKLKAEHDYLWHERRPEVTKIVTWAAGLGDRSENADYTFNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +    ++D S     ++ FGA V +       K  ++IVG +E        +
Sbjct: 61  RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIENDAGDTK-KFRIVGPEEIYGDAKEYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE+ D   V+ P GEK + I  + +
Sbjct: 120 SIDSPMARALLKKEVDDEFVVHTPEGEKEWFINAISY 156


>gi|239618392|ref|YP_002941714.1| transcription elongation factor GreA [Kosmotoga olearia TBF 19.5.1]
 gi|239507223|gb|ACR80710.1| transcription elongation factor GreA [Kosmotoga olearia TBF 19.5.1]
          Length = 158

 Score =  119 bits (299), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 85/157 (54%), Gaps = 3/157 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  K  I +T +G++ ++ EL   +++    + + I EAR  GDLSEN+EY  AK  Q  
Sbjct: 1   MSKKNVIYLTKEGYENLKNELNTLRKKLMYEVAERIKEARELGDLSENSEYDEAKNEQGK 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            + R+ ELE I+  AE+I+    +   +  GA V L    + ++   +IV  QEAD+   
Sbjct: 61  IDSRIKELEYILDNAEIIEDDGDN-SVVKLGAKVRLRNLKTNEEIEIRIVNSQEADIFEN 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SPI +A++ + + D + V  P G   Y+I+ +
Sbjct: 120 KISADSPIGKAVLERSVDDEVVVRTPSGIIKYKIITI 156


>gi|325109310|ref|YP_004270378.1| transcription elongation factor GreA [Planctomyces brasiliensis DSM
           5305]
 gi|324969578|gb|ADY60356.1| transcription elongation factor GreA [Planctomyces brasiliensis DSM
           5305]
          Length = 160

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 90/157 (57%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +++ P+T +G +K+  E++  +    P I   ++EAR  GDL ENAEY   +E Q + + 
Sbjct: 1   MERQPITRQGHEKLLAEIKHIETVILPEINTRLAEARDEGDLKENAEYHGQREQQGMAQA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--L 119
           ++  L+  +    ++D + M    + FG+TV++ +    D++ Y+ VG  E D       
Sbjct: 61  KVNLLKTKLANCYIVDKADMPKGVVTFGSTVTVKDLKWDDEEAYEFVGPGEEDYDCEPMK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +  SSP+A+A+ GK++GD ++V+ P G +  EI+++ 
Sbjct: 121 ILTSSPLAKAMEGKKVGDKVAVDTPQGVRELEIVKIQ 157


>gi|283851364|ref|ZP_06368646.1| transcription elongation factor GreA [Desulfovibrio sp. FW1012B]
 gi|283573314|gb|EFC21292.1| transcription elongation factor GreA [Desulfovibrio sp. FW1012B]
          Length = 162

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/156 (44%), Positives = 103/156 (66%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++ IP+T +GF +  +    R ++ERP II AI EAR  GDL ENA Y+AA+E Q + E 
Sbjct: 1   MESIPITVEGFRR-LERELERLKKERPAIILAIKEAREEGDLRENAGYEAARERQGMLEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  +E+ + R  VID+ST+ GD++ FGATV + + ++GD K Y ++G  EA+   G +S
Sbjct: 60  RINFIESRMPRFNVIDLSTLGGDQVIFGATVEIEDVDTGDIKKYTLLGPDEAEPSKGSIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+  AL+GK  GD I V+AP G+  YEI+ + +
Sbjct: 120 ILSPVGLALLGKYEGDEIVVDAPRGKINYEIVSITF 155


>gi|227873285|ref|ZP_03991550.1| transcription elongation factor GreA [Oribacterium sinus F0268]
 gi|227840852|gb|EEJ51217.1| transcription elongation factor GreA [Oribacterium sinus F0268]
          Length = 161

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 4/158 (2%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T  G +K++ EL   +  +R  I + I EAR  GDLSENAEY AAK+ Q  
Sbjct: 1   MAEEKKNLLTRAGLNKLESELHNLKVNKRQEIAEKIKEAREQGDLSENAEYDAAKDEQRE 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+  +E+++  AEV+D +      I  G  V L +K   ++  Y IVG  EA+   G
Sbjct: 61  IEERIVAIESLLKNAEVVDDAEE--GTINIGCKVKLFDKEFDEEVEYMIVGSTEANSLQG 118

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+  AL+   +GD ++V    G   Y++L V 
Sbjct: 119 KISNESPVGMALLRHRVGDEVTVETQAGVLEYKVLSVE 156


>gi|325268494|ref|ZP_08135124.1| transcription elongation factor GreA [Prevotella multiformis DSM
           16608]
 gi|324989022|gb|EGC20975.1| transcription elongation factor GreA [Prevotella multiformis DSM
           16608]
          Length = 169

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 92/151 (60%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+  +L++ +  ERP+   AI+EA   GDLSEN+EY AAKE Q   E R+AE
Sbjct: 16  YMSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAE 75

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           ++  + +A+++D+S +S D +   +TV +    +  K  Y IV + EA+++   +SI +P
Sbjct: 76  MKMTVAQAKIVDVSRLSTDAVQIMSTVEMTNVKTHAKMKYTIVSETEANLKQNKISIKTP 135

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +A+ L+ K++GD + +  P G     I  + 
Sbjct: 136 VAQGLLNKKVGDEVDIKIPRGTIRLRIDNIT 166


>gi|283795848|ref|ZP_06345001.1| transcription elongation factor GreA [Clostridium sp. M62/1]
 gi|291076479|gb|EFE13843.1| transcription elongation factor GreA [Clostridium sp. M62/1]
 gi|295091062|emb|CBK77169.1| transcription elongation factor GreA [Clostridium cf.
           saccharolyticum K10]
          Length = 160

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK   +T  G  + + EL+  +  +R  I + I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MADKKHILTYTGLKQYEDELQDLKVNKRQEIAQKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ +LE ++  AEV+    +  ++I  G  V L++    ++  ++IVG  EA+     
Sbjct: 61  EARIEQLEKLLKNAEVVVEEEIDLEKINIGCRVKLLDVEEDEEMEFKIVGSTEANSLQNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  AL+GK++GD++ V    G   Y++L++ 
Sbjct: 121 ISNESPVGHALLGKKVGDVVDVETQAGMIQYKVLEIQ 157


>gi|260771984|ref|ZP_05880901.1| transcription elongation factor GreB [Vibrio metschnikovii CIP
           69.14]
 gi|260612851|gb|EEX38053.1| transcription elongation factor GreB [Vibrio metschnikovii CIP
           69.14]
          Length = 158

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G++K++QE      E+RP I K ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITRAGYEKLKQEHDHLWHEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L  ++   +++D S     ++ FGA V +  +    K   +IVG +E        +
Sbjct: 61  RVRYLRKLLPELKIVDYSPQQEGKVFFGAWVEIENEAGEMK-TLRIVGPEEIYGDAKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ K++ + ++V  P G+K + I  + +
Sbjct: 120 SIDSPMARALLKKQVDEEVTVKTPTGDKLWFINAIRY 156


>gi|322421115|ref|YP_004200338.1| GreA/GreB family elongation factor [Geobacter sp. M18]
 gi|320127502|gb|ADW15062.1| GreA/GreB family elongation factor [Geobacter sp. M18]
          Length = 157

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 85/150 (56%), Gaps = 2/150 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           ++++G  ++Q+   +  ++ERPR++K +++A A GD SENAEY  +K+     +  +  L
Sbjct: 5   ISAEGRKRLQERYDFLWEKERPRMVKNMADAAAEGDRSENAEYIYSKKRLREIDRELRHL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
            + +   +V+           FG  V+  ++  G ++ YQ+VG  E DV  G +S+ SP+
Sbjct: 65  GDRLKVLKVVYPPLNPASVS-FGCWVTYEDEEGG-ERCYQLVGPDEFDVSLGKISVDSPV 122

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +AL+GK++ D +++  P G+    IL V 
Sbjct: 123 GKALLGKKVDDEVTIRRPAGDLAVTILAVT 152


>gi|29377378|ref|NP_816532.1| transcription elongation factor GreA [Enterococcus faecalis V583]
 gi|255970856|ref|ZP_05421442.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis T1]
 gi|255974431|ref|ZP_05425017.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis T2]
 gi|256618301|ref|ZP_05475147.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis ATCC 4200]
 gi|256761231|ref|ZP_05501811.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis T3]
 gi|256852494|ref|ZP_05557870.1| transcription elongation factor GreA [Enterococcus faecalis T8]
 gi|256958150|ref|ZP_05562321.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis DS5]
 gi|256960296|ref|ZP_05564467.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis Merz96]
 gi|256962732|ref|ZP_05566903.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis HIP11704]
 gi|257077423|ref|ZP_05571784.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis JH1]
 gi|257080712|ref|ZP_05575073.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis E1Sol]
 gi|257083386|ref|ZP_05577747.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis Fly1]
 gi|257088056|ref|ZP_05582417.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis D6]
 gi|257091135|ref|ZP_05585496.1| prokaryotic transcription elongation factor greA [Enterococcus
           faecalis CH188]
 gi|257417082|ref|ZP_05594076.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis AR01/DG]
 gi|257417796|ref|ZP_05594790.1| transcription elongation factor greA [Enterococcus faecalis T11]
 gi|257420586|ref|ZP_05597576.1| transcription elongation factor greA [Enterococcus faecalis X98]
 gi|294779657|ref|ZP_06745048.1| transcription elongation factor GreA [Enterococcus faecalis PC1.1]
 gi|300860921|ref|ZP_07107008.1| transcription elongation factor GreA [Enterococcus faecalis TUSoD
           Ef11]
 gi|29344845|gb|AAO82602.1| transcription elongation factor GreA [Enterococcus faecalis V583]
 gi|255961874|gb|EET94350.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis T1]
 gi|255967303|gb|EET97925.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis T2]
 gi|256597828|gb|EEU17004.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis ATCC 4200]
 gi|256682482|gb|EEU22177.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis T3]
 gi|256712348|gb|EEU27380.1| transcription elongation factor GreA [Enterococcus faecalis T8]
 gi|256948646|gb|EEU65278.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis DS5]
 gi|256950792|gb|EEU67424.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis Merz96]
 gi|256953228|gb|EEU69860.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis HIP11704]
 gi|256985453|gb|EEU72755.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis JH1]
 gi|256988742|gb|EEU76044.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis E1Sol]
 gi|256991416|gb|EEU78718.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis Fly1]
 gi|256996086|gb|EEU83388.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis D6]
 gi|256999947|gb|EEU86467.1| prokaryotic transcription elongation factor greA [Enterococcus
           faecalis CH188]
 gi|257158910|gb|EEU88870.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecalis ARO1/DG]
 gi|257159624|gb|EEU89584.1| transcription elongation factor greA [Enterococcus faecalis T11]
 gi|257162410|gb|EEU92370.1| transcription elongation factor greA [Enterococcus faecalis X98]
 gi|294453314|gb|EFG21725.1| transcription elongation factor GreA [Enterococcus faecalis PC1.1]
 gi|295114290|emb|CBL32927.1| transcription elongation factor GreA [Enterococcus sp. 7L76]
 gi|300849960|gb|EFK77710.1| transcription elongation factor GreA [Enterococcus faecalis TUSoD
           Ef11]
 gi|323478879|gb|ADX78318.1| transcription elongation factor greA [Enterococcus faecalis 62]
          Length = 159

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/157 (44%), Positives = 105/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K+  +T +G +K++QEL   +  +R  I++ I  AR++GDLSEN+EY++AK+ Q   
Sbjct: 1   MVEKVYPMTLEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LEN+I  AE+ID   +  D ++ G TV+  E   G+++ Y IVG  EAD  SG 
Sbjct: 61  EGRITTLENMIRFAEIIDNDGVDQDEVSIGKTVTFQELPDGEEEEYTIVGSAEADPFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK+LGD + +  PGG+ T +I +V 
Sbjct: 121 ISNDSPIAQALIGKQLGDQVIIATPGGDMTVKITKVE 157


>gi|225024039|ref|ZP_03713231.1| hypothetical protein EIKCOROL_00906 [Eikenella corrodens ATCC
           23834]
 gi|224943064|gb|EEG24273.1| hypothetical protein EIKCOROL_00906 [Eikenella corrodens ATCC
           23834]
          Length = 163

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 44/154 (28%), Positives = 76/154 (49%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T  G+  ++ EL     +ERP I++ ++ A + GD SEN +Y   K      + R+ 
Sbjct: 7   NYITPVGWQALKDELYQLVNKERPEIVQIVNWAASNGDRSENGDYLYGKRRMREIDRRIR 66

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   +  A+V+D  T       F      + + +G+++  +IVG  E D     +S +S
Sbjct: 67  FLTKRLEAAQVVDPETREATDQIFFGATVELLRGNGEEQTVRIVGVDEIDTARHKISWTS 126

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           P+ARAL+    GD I  + P G +  E+L V ++
Sbjct: 127 PLARALLKAREGDEIVFHGPEGREEIEVLSVAYV 160


>gi|295093556|emb|CBK82647.1| transcription elongation factor GreA [Coprococcus sp. ART55/1]
          Length = 161

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   VT  G  KI++EL+  +  +R  I   I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MAEKKNVVTYSGLKKIEEELQNLKVNKRREIAAKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ +LE ++   EV+D   +    +  G  V + +    +K  Y IVG  +AD+ +  
Sbjct: 61  EARIEQLEAMLKNIEVVDEDEVDTGVVGIGCKVVVYDYEFDEKIEYDIVGSSQADIMNNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  AL G ++G+ + V AP GE  Y +L + 
Sbjct: 121 ISDESPVGMALKGAKVGEEVLVEAPDGEFKYRVLDIK 157


>gi|26553820|ref|NP_757754.1| transcription elongation factor GreA [Mycoplasma penetrans HF-2]
 gi|26453827|dbj|BAC44158.1| transcription elongation factor GreA [Mycoplasma penetrans HF-2]
          Length = 161

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 87/158 (55%), Gaps = 3/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T  G  ++++EL++     RP IIK I EAR  GDLSENA+Y AAK  Q   E 
Sbjct: 3   AKKNLMTESGKKELEKELKYLIDVRRPEIIKQIQEAREQGDLSENADYDAAKNFQAQIES 62

Query: 62  RMAELENIITRAEVIDI---STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           R+ E++NI+   ++I     S  +  ++  GATV++ + + G+   Y+IVG  E+D    
Sbjct: 63  RIKEIQNILNNTKIIKEEKSSGSNEKKVHVGATVTIKDYSDGESHTYKIVGPIESDPSQN 122

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S   P+A+ ++GK++G+   V         +++ + 
Sbjct: 123 KISNECPLAKCIMGKKVGEESYVKGIDHPYKVKVVDIT 160


>gi|291547775|emb|CBL20883.1| transcription elongation factor GreA [Ruminococcus sp. SR1/5]
          Length = 161

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 83/155 (53%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T  G  K++ EL   +  +R  +   I EAR  GDLSENAEY AAK+ Q   E 
Sbjct: 4   AKKNLLTYAGLRKLEDELHDLKVVKRKEVAGKIKEAREQGDLSENAEYDAAKDEQRDIEA 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ E+E I+  AEV+    +  DRI+ G  V + +    +    +IVG  EA+   G +S
Sbjct: 64  RIEEIEKILKNAEVVVEDEVDLDRISVGCKVKVHDYEFEEDMELKIVGSTEANSLEGKIS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+ +ALIG    DI+ V  P G   Y++L++ 
Sbjct: 124 NESPVGKALIGAHTNDIVEVEMPSGIMKYKVLEIQ 158


>gi|306821055|ref|ZP_07454673.1| transcription elongation factor GreA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550891|gb|EFM38864.1| transcription elongation factor GreA [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 165

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 3/155 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           I +T +G++ I++EL   +   R  +   + EAR++GDLSENAEY  AK  Q   E R+A
Sbjct: 9   ILLTKEGYENIEKELDELKSVRRKEVSDKLKEARSFGDLSENAEYDEAKNEQAQLEERIA 68

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN---YQIVGDQEADVQSGLVS 121
           +LEN++ +A +I  + +  + +  G  V +  K    +     Y IVG  E++   G +S
Sbjct: 69  KLENMLRKAVIISETDLKMNIVNLGTQVKVSIKYPDGEVEEEDYTIVGSAESNPAEGKIS 128

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SPI +ALIG + G  I V  P G    +I+ + 
Sbjct: 129 NDSPIGKALIGAKKGQKIDVQVPDGIAKIKIVSIE 163


>gi|239503414|ref|ZP_04662724.1| transcription elongation factor GreB [Acinetobacter baumannii
           AB900]
          Length = 164

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 81/156 (51%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G DK+  EL+    EERP I K ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +  +    K    +  D+  D     +S
Sbjct: 61  RVRYLGKRLEELKIVDYSPEQEGKVYFGAWVDIENEEGQQKTLRIVGVDEIYDHHPQHIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+ D + V+ P G+K + I  + +
Sbjct: 121 IESPMARALLSKEVDDEVEVHTPLGKKLWYINAIRY 156


>gi|296125308|ref|YP_003632560.1| transcription elongation factor GreA [Brachyspira murdochii DSM
           12563]
 gi|296017124|gb|ADG70361.1| transcription elongation factor GreA [Brachyspira murdochii DSM
           12563]
          Length = 154

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/150 (38%), Positives = 95/150 (63%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T +G+DK++ +L   +  E   +   I+EAR  GDL ENAEY AAKE Q L   ++++
Sbjct: 4   PITKEGYDKVKAKLAELKA-EFETLPAIIAEAREKGDLKENAEYHAAKEKQGLLNAQISK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  +   E+ID S++  + + FG  V + +KN      Y+IVG+ EAD+    ++I +P
Sbjct: 63  LEGDLAGCEIIDPSSLDKNTVTFGKRVKVKDKNRNAVFEYRIVGELEADMSKNEITIVTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+ K++GD++++  P G+K  EIL++
Sbjct: 123 IAKGLLAKKVGDVVTIKVPAGDKVLEILEI 152


>gi|254461545|ref|ZP_05074961.1| transcription elongation factor GreA [Rhodobacterales bacterium
           HTCC2083]
 gi|206678134|gb|EDZ42621.1| transcription elongation factor GreA [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 151

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/152 (49%), Positives = 113/152 (74%), Gaps = 1/152 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G   ++ EL+  +  ERP II AI+EAR +GDLSENAEY +A+E  +  EGR+  L
Sbjct: 1   MTKSGHTAVEVELKNLKTVERPAIIAAIAEAREHGDLSENAEYHSAREKHSFIEGRVKLL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E I++ A VID +T++   I FGAT++LV++++ ++K +QIVG+ EA+V++GL++I SPI
Sbjct: 61  EGILSLAAVIDPATLN-GTIKFGATITLVDEDTDEEKTWQIVGEHEANVEAGLLNIKSPI 119

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ARALIGK+ GD + V  PGG K+YE+L++ +I
Sbjct: 120 ARALIGKDEGDSVEVRTPGGSKSYEVLKIEFI 151


>gi|326387218|ref|ZP_08208828.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326208399|gb|EGD59206.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 161

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 2/154 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
            P+T  G   ++         ERP+I++ +S A   GD SEN +Y   ++     +  ++
Sbjct: 6   NPITPAGMAALRARYDHLLGTERPQIVEIVSWAAGNGDRSENGDYLYGRKRMREIDRELS 65

Query: 65  ELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            L   +  A VID       +R+ FGATV + +++  +++   +VGD E D   GL+   
Sbjct: 66  HLARRMKAARVIDPVQQQERERVLFGATVEIADED-DNRRTLTLVGDDEQDAGKGLIGWG 124

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +PIARAL G  +GD+  V  PGGEK +EI+ + +
Sbjct: 125 APIARALRGARVGDLRRVRLPGGEKEWEIMTISY 158


>gi|259500870|ref|ZP_05743772.1| transcription elongation factor GreA [Lactobacillus iners DSM
           13335]
 gi|302190677|ref|ZP_07266931.1| transcription elongation factor GreA [Lactobacillus iners AB-1]
 gi|309803670|ref|ZP_07697760.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Lactobacillus iners LactinV 11V1-d]
 gi|309805761|ref|ZP_07699798.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Lactobacillus iners LactinV 09V1-c]
 gi|312874748|ref|ZP_07734767.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Lactobacillus iners LEAF 2053A-b]
 gi|315654050|ref|ZP_07906966.1| transcription elongation factor GreA [Lactobacillus iners ATCC
           55195]
 gi|325912329|ref|ZP_08174726.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Lactobacillus iners UPII 143-D]
 gi|259167564|gb|EEW52059.1| transcription elongation factor GreA [Lactobacillus iners DSM
           13335]
 gi|308164268|gb|EFO66525.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Lactobacillus iners LactinV 11V1-d]
 gi|308164881|gb|EFO67127.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Lactobacillus iners LactinV 09V1-c]
 gi|311089493|gb|EFQ47918.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Lactobacillus iners LEAF 2053A-b]
 gi|315488746|gb|EFU78392.1| transcription elongation factor GreA [Lactobacillus iners ATCC
           55195]
 gi|325475988|gb|EGC79157.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Lactobacillus iners UPII 143-D]
          Length = 153

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ KI+ E+   ++ +RPR IK + EAR+ GDLSEN+EY  AK      + R+  L
Sbjct: 7   MTPEGYKKIETEIAELKK-DRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQSRLRFL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  A++  +   +   I  G+ V +  ++  + + Y IVG  EADV    +S  SP+
Sbjct: 66  NKQLQYAQI--VQKNNDGVIDLGSQVEIQFEDEVEIEPYTIVGTLEADVIDNKISFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
             AL+ K+ GD++ VNAP G     I+ V 
Sbjct: 124 GAALMHKKAGDLVKVNAPAGSYQVRIISVK 153


>gi|332881700|ref|ZP_08449348.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680339|gb|EGJ53288.1| transcription elongation factor GreA [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 155

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/152 (35%), Positives = 92/152 (60%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+  +L+  +  ERP    AI+EAR  GDLSEN+EY AAKE Q + E ++ +
Sbjct: 3   YMSQEGYDKLVAQLKEMETIERPAASAAIAEARDKGDLSENSEYDAAKEHQAMLEMKINQ 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ +I  A++ID S +  D +   + V +    +  K  Y IV + EA+++ G +S+ +P
Sbjct: 63  LKAVIGDAKIIDTSKLKADTVQILSKVEMRNVKNNMKMAYTIVSETEANLKEGKISVQTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           IA+ L+GK++GD+  +  P G    EI  + +
Sbjct: 123 IAQGLLGKKVGDVAEIKIPHGTVQLEITNISF 154


>gi|257867772|ref|ZP_05647425.1| prokaryotic transcription elongation factor GreA [Enterococcus
           casseliflavus EC30]
 gi|257874099|ref|ZP_05653752.1| prokaryotic transcription elongation factor GreA [Enterococcus
           casseliflavus EC10]
 gi|257876660|ref|ZP_05656313.1| prokaryotic transcription elongation factor GreA [Enterococcus
           casseliflavus EC20]
 gi|325571033|ref|ZP_08146605.1| transcription elongation factor GreA [Enterococcus casseliflavus
           ATCC 12755]
 gi|257801855|gb|EEV30758.1| prokaryotic transcription elongation factor GreA [Enterococcus
           casseliflavus EC30]
 gi|257808263|gb|EEV37085.1| prokaryotic transcription elongation factor GreA [Enterococcus
           casseliflavus EC10]
 gi|257810826|gb|EEV39646.1| prokaryotic transcription elongation factor GreA [Enterococcus
           casseliflavus EC20]
 gi|325156118|gb|EGC68304.1| transcription elongation factor GreA [Enterococcus casseliflavus
           ATCC 12755]
          Length = 159

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/157 (45%), Positives = 104/157 (66%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K+  +T +G +K++QEL   +  +R  II+ I  AR++GDLSEN+EY++AK+ Q   
Sbjct: 1   MVEKVYPMTLEGKEKLEQELEELKTVKRGEIIERIKVARSFGDLSENSEYESAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LEN+I  AE+ID   +  D ++ G TV  VE   GD++ Y IVG  EAD  SG 
Sbjct: 61  EGRITTLENMIRFAEIIDNEGVDSDEVSIGKTVIFVELPDGDEEEYMIVGSAEADPFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIARALIGK++ D ++++ PGG+    I +V 
Sbjct: 121 ISNDSPIARALIGKKVNDEVTISTPGGDMQVRITEVK 157


>gi|88861075|ref|ZP_01135710.1| transcription elongation factor GreB [Pseudoalteromonas tunicata
           D2]
 gi|88817003|gb|EAR26823.1| transcription elongation factor GreB [Pseudoalteromonas tunicata
           D2]
          Length = 160

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 85/157 (54%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  + +T +G++K++QE  +  +E+RP + K ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTMLITFEGYNKLKQEHDYLWKEQRPEVTKIVTWAASLGDRSENADYTFNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L  I+   +++  S     ++ FGA V +   +   K    +  ++        +S
Sbjct: 61  RVRYLRKIMPDLKIVYYSPEQEGKVFFGAWVEIENDDGDIKNLRIVGPEEIYGDSKNYIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + SP+ARALI KE+ D + V  P GEKT+ I ++ ++
Sbjct: 121 VDSPMARALIKKEVDDEVIVKTPEGEKTWYINKITYV 157


>gi|15672618|ref|NP_266792.1| transcription elongation factor [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281491116|ref|YP_003353096.1| transcription elongation factor GreA [Lactococcus lactis subsp.
           lactis KF147]
 gi|13878507|sp|Q9CHT2|GREA_LACLA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|12723539|gb|AAK04734.1|AE006296_8 transcription elongation factor GreA [Lactococcus lactis subsp.
           lactis Il1403]
 gi|281374866|gb|ADA64385.1| Transcription elongation factor GreA [Lactococcus lactis subsp.
           lactis KF147]
 gi|326406137|gb|ADZ63208.1| transcription elongation factor GreA [Lactococcus lactis subsp.
           lactis CV56]
          Length = 156

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/155 (46%), Positives = 105/155 (67%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M    P+T +G DK++ EL   +  +RP +I  I  AR+YGDLSEN+EY+AAK+ Q   E
Sbjct: 1   MEKTFPMTQEGLDKLKLELENLKLVKRPEVIDRIKVARSYGDLSENSEYEAAKDEQAFIE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR++ +E +I  AE++D + ++ D +A G  V+ VE    D+++YQIVG  EAD  SG +
Sbjct: 61  GRISTVETMIRYAEIVDNAKIAKDEVALGKNVTFVEVGETDEESYQIVGTAEADPFSGKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SPIAR LIGK++GDI++V  P GE T +I++V
Sbjct: 121 SNESPIARVLIGKKVGDIVNVPLPVGEMTVKIVKV 155


>gi|256821719|ref|YP_003145682.1| transcription elongation factor GreB [Kangiella koreensis DSM
           16069]
 gi|256795258|gb|ACV25914.1| transcription elongation factor GreB [Kangiella koreensis DSM
           16069]
          Length = 162

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T+ G  +++ EL +  +  RP + +AI+ A A GD SENAEY   K+     +
Sbjct: 1   MPRSNLITAAGAVRLRNELAYLWKTLRPEVTRAINAAAAEGDRSENAEYIYRKKQLREID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L+       VI+ +    D+I FGA VSL ++N G +  Y++VG  E D +   +
Sbjct: 61  RRVRYLQKRTADLRVIEHTPQEKDKIFFGAQVSLEDEN-GQEIIYRLVGSDEFDHKPHYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ K++ D + +  P GEK + I+ + +
Sbjct: 120 SIDSPMARALLKKQIDDEVKLRLPDGEKLFWIMGIEY 156


>gi|289422572|ref|ZP_06424415.1| transcription elongation factor GreA [Peptostreptococcus anaerobius
           653-L]
 gi|289157144|gb|EFD05766.1| transcription elongation factor GreA [Peptostreptococcus anaerobius
           653-L]
          Length = 161

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 96/155 (61%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             +I +T +GFDK+++EL   +   R  + + +  A ++GDLSENAEY  AK+ Q   E 
Sbjct: 6   SKEIILTQEGFDKLEEELELLKTTRRKEVAERLKVAISFGDLSENAEYDEAKKEQAALEE 65

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +LEN++ +A +ID S++  D I  G+ V + +++  ++  Y IVG  EAD  +G +S
Sbjct: 66  RIIKLENMVRKAVIIDESSVDLDVITIGSIVRIYDEDFDEEVEYSIVGSAEADPYNGKIS 125

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+ ++L+G ++GD++ VN P G    ++L + 
Sbjct: 126 NESPVGKSLLGSKIGDVVEVNVPDGIIKLKVLDIK 160


>gi|262392646|ref|YP_003284500.1| transcription elongation factor GreB [Vibrio sp. Ex25]
 gi|262336240|gb|ACY50035.1| transcription elongation factor GreB [Vibrio sp. Ex25]
          Length = 163

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++QE  +   E+RP I K ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITREGYNKLKQEHDYLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +    ++D S     ++ FGA V +  +    K  ++IVG +E        +
Sbjct: 61  RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIENEAGEVK-KFRIVGPEEIYGDAKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARA++ K++ +  +V  P GEK + I  + +
Sbjct: 120 SIDSPMARAMLKKQVDEEFTVRTPEGEKEWFINSIEY 156


>gi|91224988|ref|ZP_01260247.1| transcription elongation factor GreB [Vibrio alginolyticus 12G01]
 gi|269965882|ref|ZP_06179975.1| Transcription elongation factor greB [Vibrio alginolyticus 40B]
 gi|91190234|gb|EAS76504.1| transcription elongation factor GreB [Vibrio alginolyticus 12G01]
 gi|269829435|gb|EEZ83676.1| Transcription elongation factor greB [Vibrio alginolyticus 40B]
          Length = 163

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 83/157 (52%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++QE  +   E+RP I K ++ A + GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITREGYNKLKQEHDYLWNEKRPEITKIVTWAASLGDRSENADYTFNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L   +    ++D S     ++ FGA V +  +    K  ++IVG +E        +
Sbjct: 61  RVRFLRKFLPEVTIVDYSPQQEGKVFFGAWVEIENEAGEVK-KFRIVGPEEIYGDAKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARA++ K++ +  +V  P GEK + I  + +
Sbjct: 120 SIDSPMARAMLKKQVDEEFTVRTPEGEKEWFINSIEY 156


>gi|56459393|ref|YP_154674.1| GreB [Idiomarina loihiensis L2TR]
 gi|56178403|gb|AAV81125.1| GreB [Idiomarina loihiensis L2TR]
          Length = 159

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 84/156 (53%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G++K+QQEL    + ER   ++ +S A + GD SENA+Y+  K+     +G
Sbjct: 1   MKTNLITLGGYEKLQQELEHLWRVERRETVEKVSWAASLGDRSENADYKYNKQKLRKIDG 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   + + +V+  S     ++ FGA V + ++    +  +QIVG  E   +   VS
Sbjct: 61  RIRYLTKRLEQVKVVYYSPQQDGKVFFGAWVEIEDEEENVRA-FQIVGPDEIYDRKDAVS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ K++ D   V    G +T+ I ++ +
Sbjct: 120 IDSPMARALLKKQVDDEAEVTTQQGTRTWFINKISY 155


>gi|332308523|ref|YP_004436374.1| transcription elongation factor GreB [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175852|gb|AEE25106.1| transcription elongation factor GreB [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 158

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 82/157 (52%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+ K+  E      ++RP I K ++ A + GD SENA+YQ  K      + 
Sbjct: 1   MKTKLITPEGYKKLNDEHDELWLKQRPEITKIVTWAASLGDRSENADYQYNKRKLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L  ++   ++++ S     ++ FGA V +       K+ ++IVG +E      G +
Sbjct: 61  RVRYLRKLLPELQIVNYSPQQAGKVFFGAWVEIENDEGETKQ-FRIVGPEEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALI KE+ D+ SV  P G K + I  + +
Sbjct: 120 SIDSPMARALIKKEVDDVASVKTPTGYKDWYITSIEY 156


>gi|89095170|ref|ZP_01168094.1| transcription elongation factor GreB [Oceanospirillum sp. MED92]
 gi|89080528|gb|EAR59776.1| transcription elongation factor GreB [Oceanospirillum sp. MED92]
          Length = 169

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 90/155 (58%), Gaps = 4/155 (2%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T++G+ ++  EL++  + +RP + +++ EA A GD SENAEY   K+     + R+  
Sbjct: 14  YITAEGYKRLNDELKYLWKVKRPEVTQSVKEAAAQGDRSENAEYIYGKKQLREIDRRVRY 73

Query: 66  LENIITRAEVID--ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           L   +    V+D   +    D + FGA V+L+++    +K ++IVG  E   ++  +S+ 
Sbjct: 74  LSKRLEDMVVVDRAPTPDKQDTVFFGAWVTLLDEE-ELEKRFRIVGPDEIGDEADYISVD 132

Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           SP+AR ++ K+LGD + +  P G E  YEIL++ +
Sbjct: 133 SPLARLILKKQLGDEVCLEKPDGSEAWYEILRIEY 167


>gi|304436291|ref|ZP_07396269.1| transcription elongation factor GreA [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370696|gb|EFM24343.1| transcription elongation factor GreA [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 156

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 88/157 (56%), Gaps = 3/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T  G++K+ ++L + +   R  I + +  A A GDLSEN+EY  AK  Q   
Sbjct: 1   MAEKKVMLTEDGYNKLVEKLNYLKSVRRIEIAERLKAAIALGDLSENSEYDDAKNEQAFL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG + ELEN I  +++I         +  G+ V + +    +++ + IVG  EAD   G 
Sbjct: 61  EGEIQELENKIRNSDIIKAGDG--KTVTMGSRVMVKDLEFDEEETFLIVGSTEADPDEGK 118

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  AL+G+++G  I+VNAP G   Y+I+ + 
Sbjct: 119 ISNESPLGEALLGQKIGRTINVNAPAGVIQYKIIDIK 155


>gi|167751089|ref|ZP_02423216.1| hypothetical protein EUBSIR_02074 [Eubacterium siraeum DSM 15702]
 gi|167656007|gb|EDS00137.1| hypothetical protein EUBSIR_02074 [Eubacterium siraeum DSM 15702]
          Length = 156

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 94/155 (60%), Gaps = 1/155 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +  +TS+G   +++ L   +   R  I + I  A ++GDLSEN+EY  AK  Q + E
Sbjct: 1   MATQTTLTSQGLKDLEERLEHLKSVTRKEIAEKIKVALSFGDLSENSEYDEAKNEQGIVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             +AE+E  +  A+V+D   +S + +  G TV + +++ G K  + +VG +E D+++  +
Sbjct: 61  AEIAEIEATLKNAKVVDEDELSTEHVNIGNTVVIEDES-GKKIKFFLVGSKEVDMKAMKI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SPI +A IG++LG+ +SV AP G K Y+I+++
Sbjct: 120 SDESPIGKACIGRKLGEEVSVEAPAGVKKYKIVEI 154


>gi|309805958|ref|ZP_07699985.1| transcription elongation factor GreA [Lactobacillus iners LactinV
           03V1-b]
 gi|309808528|ref|ZP_07702427.1| transcription elongation factor GreA [Lactobacillus iners LactinV
           01V1-a]
 gi|312871258|ref|ZP_07731356.1| transcription elongation factor GreA [Lactobacillus iners LEAF
           3008A-a]
 gi|312872694|ref|ZP_07732759.1| transcription elongation factor GreA [Lactobacillus iners LEAF
           2062A-h1]
 gi|325912492|ref|ZP_08174882.1| transcription elongation factor GreA [Lactobacillus iners UPII
           60-B]
 gi|308167640|gb|EFO69792.1| transcription elongation factor GreA [Lactobacillus iners LactinV
           03V1-b]
 gi|308168356|gb|EFO70475.1| transcription elongation factor GreA [Lactobacillus iners LactinV
           01V1-a]
 gi|311091736|gb|EFQ50115.1| transcription elongation factor GreA [Lactobacillus iners LEAF
           2062A-h1]
 gi|311093272|gb|EFQ51618.1| transcription elongation factor GreA [Lactobacillus iners LEAF
           3008A-a]
 gi|325478165|gb|EGC81287.1| transcription elongation factor GreA [Lactobacillus iners UPII
           60-B]
          Length = 153

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ KI+ E+   ++ +RPR IK + EAR+ GDLSEN+EY  AK      + R+  L
Sbjct: 7   MTPEGYKKIETEIAELKK-DRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQSRLRFL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  A++  +   +   +  G+ V +  ++  + + Y IVG  EADV    +S  SP+
Sbjct: 66  NKQLQYAQI--VQKNNDGVVDLGSQVEIQFEDEEEIEPYTIVGTLEADVIDNKISFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
             AL+ K+ GD++ VNAP G     I+ V 
Sbjct: 124 GAALMHKKAGDLVKVNAPAGSYQVRIISVK 153


>gi|87122832|ref|ZP_01078703.1| transcription elongation factor GreB [Marinomonas sp. MED121]
 gi|86161884|gb|EAQ63178.1| transcription elongation factor GreB [Marinomonas sp. MED121]
          Length = 168

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 83/152 (54%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G  K+  EL++  +E+RP++ +++ EA A GD SENAEY   K+     + R+  
Sbjct: 14  YITKEGAQKLTTELKYLWKEKRPQVTESVREAAAQGDRSENAEYIYGKKQLREIDRRVRY 73

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  +    V+D        I FGA V+L + +   K  ++IVG  E D  S  +SI SP
Sbjct: 74  LEKRLEAFTVVDRLPEDQLSIYFGAWVTLEDDDENTKY-FRIVGPDELDHDSRYISIDSP 132

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +A+AL+ K+ GD I +    G   Y I +V +
Sbjct: 133 MAKALLKKQEGDEIELKLVTGIVNYIIDKVEY 164


>gi|126642687|ref|YP_001085671.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
           17978]
 gi|169794997|ref|YP_001712790.1| transcription elongation factor and transcript cleavage
           [Acinetobacter baumannii AYE]
 gi|184159217|ref|YP_001847556.1| transcription elongation factor [Acinetobacter baumannii ACICU]
 gi|213158338|ref|YP_002320389.1| transcription elongation factor GreB [Acinetobacter baumannii
           AB0057]
 gi|215482547|ref|YP_002324737.1| transcription elongation factor GreB [Acinetobacter baumannii
           AB307-0294]
 gi|260556477|ref|ZP_05828695.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
           19606]
 gi|301346025|ref|ZP_07226766.1| transcription elongation factor GreB [Acinetobacter baumannii
           AB056]
 gi|301511853|ref|ZP_07237090.1| transcription elongation factor GreB [Acinetobacter baumannii
           AB058]
 gi|301594320|ref|ZP_07239328.1| transcription elongation factor GreB [Acinetobacter baumannii
           AB059]
 gi|332855917|ref|ZP_08436091.1| transcription elongation factor GreB [Acinetobacter baumannii
           6013150]
 gi|332867120|ref|ZP_08437399.1| transcription elongation factor GreB [Acinetobacter baumannii
           6013113]
 gi|332876188|ref|ZP_08443967.1| transcription elongation factor GreB [Acinetobacter baumannii
           6014059]
 gi|126388571|gb|ABO13069.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
           17978]
 gi|169147924|emb|CAM85787.1| transcription elongation factor and transcript cleavage
           [Acinetobacter baumannii AYE]
 gi|183210811|gb|ACC58209.1| Transcription elongation factor [Acinetobacter baumannii ACICU]
 gi|213057498|gb|ACJ42400.1| transcription elongation factor GreB [Acinetobacter baumannii
           AB0057]
 gi|213986627|gb|ACJ56926.1| transcription elongation factor GreB [Acinetobacter baumannii
           AB307-0294]
 gi|260409736|gb|EEX03036.1| transcription elongation factor GreB [Acinetobacter baumannii ATCC
           19606]
 gi|322509131|gb|ADX04585.1| Transcription elongation factor GreB [Acinetobacter baumannii
           1656-2]
 gi|323519159|gb|ADX93540.1| transcription elongation factor [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332727236|gb|EGJ58685.1| transcription elongation factor GreB [Acinetobacter baumannii
           6013150]
 gi|332734193|gb|EGJ65323.1| transcription elongation factor GreB [Acinetobacter baumannii
           6013113]
 gi|332735622|gb|EGJ66670.1| transcription elongation factor GreB [Acinetobacter baumannii
           6014059]
          Length = 164

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 81/156 (51%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G DK+  EL+    EERP I K ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +  +    K    +  D+  D     +S
Sbjct: 61  RVRYLGKRLEELKIVDYSPEQEGKVYFGAWVDIENEEGEQKTLRIVGVDEIYDHHPQHIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ KE+ D + V+ P G+K + I  + +
Sbjct: 121 IESPMARALLSKEVDDEVEVHTPLGKKLWYINAIRY 156


>gi|310820881|ref|YP_003953239.1| transcription elongation factor GreB [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393953|gb|ADO71412.1| Transcription elongation factor GreB [Stigmatella aurantiaca
           DW4/3-1]
          Length = 178

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 2/157 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            +  +T  G +++ +EL      ERP++   +S A A GD SENAEY   K+     + R
Sbjct: 23  QRRYLTRLGAERMHRELLRLLNVERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRR 82

Query: 63  MAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           +  L+  +  A ++  +  +   R+ FGATV+L +++      YQIVG  E D Q G +S
Sbjct: 83  IRFLQKRLDTATIVTPAEQTDQGRVYFGATVTLEDEDGVQT-TYQIVGSDEIDTQGGRIS 141

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + SPI +AL+ K +GD + V  P GE    I+ + ++
Sbjct: 142 VESPIGKALLRKAVGDSVEVMRPRGEIELTIVAIAYM 178


>gi|260549248|ref|ZP_05823468.1| transcription elongation factor and transcript cleavage
           [Acinetobacter sp. RUH2624]
 gi|260407654|gb|EEX01127.1| transcription elongation factor and transcript cleavage
           [Acinetobacter sp. RUH2624]
          Length = 164

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/156 (30%), Positives = 81/156 (51%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G DK+  EL+    EERP I K ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MKSNLITRSGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D +     ++ FGA V +  +    K    +  D+  D     +S
Sbjct: 61  RVRYLGKRLEELKIVDYAPEQEGKVYFGAWVEIENEEGEQKTLRIVGIDEIYDHHPQHIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ K++ D + V+ P G+K + I  + +
Sbjct: 121 IESPMARALLSKQVDDEVEVHTPLGKKLWYINAIRY 156


>gi|269217202|ref|ZP_06161056.1| transcription elongation factor GreA [Slackia exigua ATCC 700122]
 gi|269129339|gb|EEZ60424.1| transcription elongation factor GreA [Slackia exigua ATCC 700122]
          Length = 161

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 95/158 (60%), Gaps = 4/158 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M ++I +T +G  K+++EL + + E+R  + + I  AR +GD+SEN+EY  AK  Q L E
Sbjct: 7   MANEIVLTPEGKQKLEEELHFLETEKRAEVGERIRVAREFGDISENSEYDDAKNEQGLME 66

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+A++ +I++ A +++    S +R+  G+TV++     G ++ + IVG  EADV SG +
Sbjct: 67  ARIAQINDILSNAVLVEAPKRS-NRVNIGSTVTV--DMGGRERVFTIVGAAEADVSSGKI 123

Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           S  SP+  AL+G + GD  +   P G     +I+++  
Sbjct: 124 SNESPVGAALLGGKKGDHFTAEGPTGRVIEMDIVKIEH 161


>gi|291544387|emb|CBL17496.1| transcription elongation factor GreA [Ruminococcus sp. 18P13]
          Length = 156

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 90/154 (58%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K  ++ +G++K++Q+L +     R  + + + EAR++GDLSENAEY  AK  Q + E 
Sbjct: 1   MAKKQMSREGYEKLEQKLSYLITVRRAEVAQKLKEARSFGDLSENAEYDEAKNEQGILEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +AEL+  +  AE+++   +S D I  G+ + +    +   +  QIVG  EA+ + G +S
Sbjct: 61  EIAELQITLENAEIVEDDNISVDEIGMGSIIEIRRVGTDKIERLQIVGTNEANFKEGKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SPI ++ + K +GD   V AP GE  +E++ +
Sbjct: 121 DESPIGKSALKKRVGDTFLVEAPAGELEFEVVAI 154


>gi|309809127|ref|ZP_07703000.1| transcription elongation factor GreA [Lactobacillus iners SPIN
           2503V10-D]
 gi|308170572|gb|EFO72592.1| transcription elongation factor GreA [Lactobacillus iners SPIN
           2503V10-D]
          Length = 153

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ KI+ E+   ++ +RPR IK + EAR+ GDLSEN+EY  AK      + R+  L
Sbjct: 7   MTPEGYKKIETEIAELKK-DRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQSRLRFL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  A++  +   +   I  G+ V +  ++  + + Y IVG  EADV    +S  SP+
Sbjct: 66  NKQLQYAQI--VQKNNDGVIDLGSQVEIQFEDEEEIEPYTIVGTLEADVIDNKISFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
             AL+ K+ GD++ VNAP G     I+ V 
Sbjct: 124 GAALMHKKAGDLVKVNAPAGSYQVRIISVK 153


>gi|192360004|ref|YP_001981507.1| transcription elongation factor GreB [Cellvibrio japonicus Ueda107]
 gi|190686169|gb|ACE83847.1| transcription elongation factor GreB [Cellvibrio japonicus Ueda107]
          Length = 157

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +GFD +Q+EL    + ERP + K +S A + GD SENA+YQ  K+     + 
Sbjct: 1   MRTPLITRQGFDDLQKELDELWRVERPDVTKKVSWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +V++       ++ FGA V +     G    +++VG  E   +   +S
Sbjct: 61  RVRYLRKCLENLKVVEYRPEQEGKVFFGAWVEVENDE-GKTLTFRVVGYDEIFNRKDYIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ K + D   V    G  T+ I  + +
Sbjct: 120 IDSPMARALLKKAVDDEAIVATEAGTVTWYINSIWY 155


>gi|312866104|ref|ZP_07726325.1| transcription elongation factor GreA [Streptococcus downei F0415]
 gi|311098508|gb|EFQ56731.1| transcription elongation factor GreA [Streptococcus downei F0415]
          Length = 160

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    ++++QEL   +   RP +I+ I  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 1   MAEKTYPMTQAEKEQLEQELEDLKLVRRPEVIERIKIARSYGDLSENSEYDAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG++  +E  I  AE+ID   ++ D +A G TV + E  + D+  Y IVG   ADV +G 
Sbjct: 61  EGQIQIIETKIRYAEIIDSDAVASDEVAIGKTVVVQEVGTKDQDTYSIVGAAGADVFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK++GD  ++ +P G    EI+ V 
Sbjct: 121 ISNESPIAQALIGKKVGDKTTIESPAGSYDVEIVSVE 157


>gi|255281437|ref|ZP_05345992.1| transcription elongation factor GreA [Bryantella formatexigens DSM
           14469]
 gi|255267925|gb|EET61130.1| transcription elongation factor GreA [Bryantella formatexigens DSM
           14469]
          Length = 159

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 81/154 (52%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            K  +T  G   ++ E+   +   R  +   I EAR  GDLSENAEY AAK+ Q   E R
Sbjct: 4   KKNLLTYSGLKALEDEMHDLKVVRRKEVAAKIKEAREQGDLSENAEYDAAKDEQRDIEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E I+  AEV+    +  ++I  G TV L ++   ++  YQIVG  EA+   G +S 
Sbjct: 64  IEEIEKILKNAEVVVEDDVDLNKINVGCTVKLFDEEYEEEIEYQIVGSTEANSLMGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +ALIG  +G  I V    G   Y +L + 
Sbjct: 124 ESPVGKALIGASIGQEIEVETQVGVCKYRVLGIQ 157


>gi|241888529|ref|ZP_04775837.1| transcription elongation factor GreA [Gemella haemolysans ATCC
           10379]
 gi|241864796|gb|EER69170.1| transcription elongation factor GreA [Gemella haemolysans ATCC
           10379]
          Length = 162

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 93/156 (59%), Gaps = 4/156 (2%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T +G+DK+ +EL   ++ +RP +I+ I  AR++GDLSEN+EY AAK+ Q   E R+
Sbjct: 8   EYQMTQEGYDKLVEELEHYKKVKRPEVIEKIKIARSFGDLSENSEYDAAKDEQGFIEQRI 67

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            E+E +I  A +I++   S   I  G  V+  E   G  + Y+IVG  EA+     +S  
Sbjct: 68  LEMEQMIRYAVIIELDGKS-STIRLGNKVTYQELPDGLTETYKIVGSAEANPFEFKISNE 126

Query: 124 SPIARALIGKELGDIISVNAPGG---EKTYEILQVL 156
           SP+A+AL+GKE+GD+  V+ P G       +IL V 
Sbjct: 127 SPVAQALLGKEVGDVAKVSLPTGPEDSMDIKILAVE 162


>gi|227499306|ref|ZP_03929418.1| transcription elongation factor [Anaerococcus tetradius ATCC 35098]
 gi|227218657|gb|EEI83891.1| transcription elongation factor [Anaerococcus tetradius ATCC 35098]
          Length = 157

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 96/158 (60%), Gaps = 3/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  ++ ++ +  +K++ EL + + ++RP I + I  AR++GDLSENA+Y  AK  Q  
Sbjct: 1   MTENKEVILSKEYLEKLEDELEYLKTKKRPEIAEKIKIARSFGDLSENADYDEAKNEQGE 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+A++E++I  A+ I++   S +    G TV++ ++   ++ +Y+IVG  E++   G
Sbjct: 61  IESRIAKVEDMIRNAKTIEVKENSDEVG-VGNTVTVYDEEFDEEFDYKIVGTAESNPLEG 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+  ALIGK++ + + V+ P G+  + I  + 
Sbjct: 120 FISNESPVGAALIGKKVNERVEVSTPNGKMYFVIKNIK 157


>gi|312874044|ref|ZP_07734079.1| transcription elongation factor GreA [Lactobacillus iners LEAF
           2052A-d]
 gi|329920936|ref|ZP_08277485.1| transcription elongation factor GreA [Lactobacillus iners SPIN
           1401G]
 gi|311090384|gb|EFQ48793.1| transcription elongation factor GreA [Lactobacillus iners LEAF
           2052A-d]
 gi|328935501|gb|EGG31972.1| transcription elongation factor GreA [Lactobacillus iners SPIN
           1401G]
          Length = 153

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ KI+ E+   ++ +RPR IK + EAR+ GDLSEN+EY  AK      + R+  L
Sbjct: 7   MTPEGYKKIETEIAELKK-DRPRRIKILQEARSLGDLSENSEYTEAKRDLGHLQSRLRFL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  A++  +   +   I  G+ V +  ++  + + Y IVG  EADV    +S  SP+
Sbjct: 66  NKQLQYAQI--VQKNNDGMIDLGSQVEIQFEDEVEIEPYTIVGTLEADVIDNKISFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
             AL+ K+ GD++ VNAP G     I+ V 
Sbjct: 124 GAALMHKKAGDLVKVNAPAGSYQVRIISVK 153


>gi|254786831|ref|YP_003074260.1| transcription elongation factor GreB [Teredinibacter turnerae
           T7901]
 gi|237686835|gb|ACR14099.1| transcription elongation factor GreB [Teredinibacter turnerae
           T7901]
          Length = 172

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 82/156 (52%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G  K++ EL +  + ERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 17  MSTPLITEEGLTKLKSELDYLWRTERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 76

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   I   +V+  +      + FG+ V +  +   +K   +IVG  E   +   +S
Sbjct: 77  RVRYLRKRIDSLKVVRYAKEQEGSVYFGSWVKIENEAGENK-ELRIVGYDEIFGEKNYIS 135

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+A+AL+ K++GD   V    GE  +EI+++ +
Sbjct: 136 IDSPMAKALLRKKVGDEAIVKTEVGEFCWEIMEISY 171


>gi|317055778|ref|YP_004104245.1| transcription elongation factor GreA [Ruminococcus albus 7]
 gi|315448047|gb|ADU21611.1| transcription elongation factor GreA [Ruminococcus albus 7]
          Length = 158

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/150 (36%), Positives = 88/150 (58%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           V+  G++K+ +E  +    +R  + + + EAR++GDLSENAEY  AK  Q + E R+ EL
Sbjct: 7   VSKAGYNKLVEEKEYLVTVKRKEVAQKLKEARSFGDLSENAEYDEAKNEQAILESRINEL 66

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E +I+ A V+D   +S   +  G+ V L +    + +  QIVG  E+D  +G +S  SPI
Sbjct: 67  EILISNATVVDDDEISVHEVGVGSYVKLKDLEFDEIETLQIVGSTESDPDNGKISDESPI 126

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A +  ++GDI  V AP G   +E+L++ 
Sbjct: 127 GKAALHMKVGDIFEVEAPAGMIKFEVLEIT 156


>gi|197117113|ref|YP_002137540.1| transcription elongation factor GreA/GreB domain-containing protein
           [Geobacter bemidjiensis Bem]
 gi|197086473|gb|ACH37744.1| transcription elongation factor GreA/GreB domain protein [Geobacter
           bemidjiensis Bem]
          Length = 158

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 85/149 (57%), Gaps = 2/149 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           ++++G  ++Q+   +  + ERPR++K +++A A GD SENAEY  +K+     +  +  L
Sbjct: 6   ISAEGRKRLQERYDFLWETERPRMVKNMADAAAEGDRSENAEYIYSKKRLREIDRELRHL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
            + +   +V+           FG  VS  ++    ++ YQ+VG  E DV +G +S+ SP+
Sbjct: 66  GDRLKVVKVVYPPLNPSTVS-FGCWVSYEDEEGE-ERCYQLVGPDEFDVTAGKISVDSPV 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
            +AL+G+++ D I++  P G+ T  I+ +
Sbjct: 124 GKALLGRKVDDEITIKRPAGDLTVTIVAI 152


>gi|91202565|emb|CAJ72204.1| hypothetical protein kustd1459 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 741

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 83/154 (53%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KI VT  G++K ++EL      +     + + EA + GDL ENAEYQAA+E Q     +
Sbjct: 585 NKIYVTKHGYEKQKKELDNIMNIQFAENARDLGEAISRGDLRENAEYQAAREKQAQLIEK 644

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
              L+  + +   I+  T+  + ++ G  V++  K+    + Y ++G  +AD+   ++S 
Sbjct: 645 AERLKADLQKIVFIEPYTVKTNIVSPGTKVTIKNKDKETTETYTLLGPWDADIDKNIISY 704

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SPI + L+ K+ G+ +++  P  E   +I+++ 
Sbjct: 705 LSPIGKGLLNKKTGETVTIQLPENEIVCDIIKIE 738


>gi|313895523|ref|ZP_07829079.1| transcription elongation factor GreA [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975649|gb|EFR41108.1| transcription elongation factor GreA [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 156

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 89/157 (56%), Gaps = 3/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T  G++K+ ++L + +   R  + + +  A A GDLSEN+EY  AK  Q   
Sbjct: 1   MTEKKVMLTEDGYNKLVEKLNYLKSVRRIEVAERLKAAIALGDLSENSEYDDAKNEQAFL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG + ELEN I  +++I         +  G+ V++ +    + + + IVG  EAD   G 
Sbjct: 61  EGEIQELENKIRNSDIIKAGDG--KSVTIGSRVTVKDLEFDEDETFLIVGSTEADPDEGK 118

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  AL+G+++G +I+V+AP G   Y+I+ + 
Sbjct: 119 ISNESPLGMALLGQKIGKVINVSAPAGMIRYKIVDIK 155


>gi|325860400|ref|ZP_08173512.1| transcription elongation factor GreA [Prevotella denticola CRIS
           18C-A]
 gi|327312605|ref|YP_004328042.1| transcription elongation factor GreA [Prevotella denticola F0289]
 gi|325482058|gb|EGC85079.1| transcription elongation factor GreA [Prevotella denticola CRIS
           18C-A]
 gi|326944307|gb|AEA20192.1| transcription elongation factor GreA [Prevotella denticola F0289]
          Length = 153

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 94/150 (62%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           ++ +G+DK+  +L++ +  ERP+   AI+EA   GDLSEN+EY AAKE Q   E R+AE+
Sbjct: 1   MSQEGYDKLVADLQYLESVERPKASAAIAEAADKGDLSENSEYDAAKEAQRHLEARIAEM 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  + +A+++D+S +S + +   +TV + +  +  K  Y IV + EA+++   +SI +PI
Sbjct: 61  KMTVAQAKIVDLSRLSTEAVQIMSTVEMTDVKTKAKMKYTIVSETEANLKQNKISIKTPI 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
           A+ L+ K++GD + +  P G     I ++ 
Sbjct: 121 AQGLLNKKVGDEVEITIPRGTIKLRIDKIT 150


>gi|313665187|ref|YP_004047058.1| transcription elongation factor GreA [Mycoplasma leachii PG50]
 gi|312949485|gb|ADR24081.1| putative transcription elongation factor GreA [Mycoplasma leachii
           PG50]
          Length = 157

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +I +T +G ++++ EL+   +  RP++I+ + EAR  GDLSENA+Y AA+  Q   E
Sbjct: 1   MSKEIILTQEGLEELKAELKNLLEVTRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
            R+ E+E +I RA+VID S       +  G+TV  +       K  +IVG  EAD  S L
Sbjct: 61  ARIKEVETLINRAKVIDDSKTHSTGEVKIGSTVEFLSSLDHKTKEIKIVGAIEADPFSRL 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+A++GK++GD + +          I  + 
Sbjct: 121 ISNESPIAKAILGKKIGDTVEIKDILKPYKITIKSIK 157


>gi|325479434|gb|EGC82530.1| transcription elongation factor GreA [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 157

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 95/158 (60%), Gaps = 3/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  ++ ++ +  +K++ EL + + ++RP I + I  AR++GDLSENA+Y  AK  Q  
Sbjct: 1   MTENKEVILSKEYLEKLEDELEYLKTKKRPEIAEKIKVARSFGDLSENADYDEAKNEQGE 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+A++E++I  A+ I+++  S +    G TV++ ++   +   Y+IVG  E++   G
Sbjct: 61  VESRIAKVEDMIRNAKTIEVNENSDEVG-VGNTVTVYDEEFDEDLEYKIVGTAESNPLEG 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+  ALIGK++ + + V+ P G+  + I  + 
Sbjct: 120 FISNESPVGAALIGKKVNERVEVSTPNGKMYFVIKNIK 157


>gi|296282663|ref|ZP_06860661.1| transcription elongation factor GreB [Citromicrobium bathyomarinum
           JL354]
          Length = 165

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 2/158 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M    P+T  G+  ++          RP I++ +S A   GD SEN +Y   ++     +
Sbjct: 1   MKGDNPITPAGYSAMKARYDHLLGTARPEIVETVSWAAGNGDRSENGDYLYGRKKMREID 60

Query: 61  GRMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
             +A L   +  A VID     + DR+ FGATV+LV+++   +K   +VG+ EA+   G 
Sbjct: 61  RELAHLARRMKSARVIDPADQPNRDRVFFGATVTLVDED-DREKVLTLVGNDEAEASEGR 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +   SP+ARAL G E+GD+  V  P G + +E+L++ +
Sbjct: 120 IGWGSPMARALRGAEVGDLRMVKGPTGLREWEVLKISY 157


>gi|109896438|ref|YP_659693.1| transcription elongation factor GreB [Pseudoalteromonas atlantica
           T6c]
 gi|109698719|gb|ABG38639.1| transcription elongation factor GreB [Pseudoalteromonas atlantica
           T6c]
          Length = 158

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G+ K+  E      ++RP I K ++ A + GD SENA+YQ  K      + 
Sbjct: 1   MKTKLITPEGYKKLNDEHDELWLKQRPEITKIVTWAASLGDRSENADYQYNKRKLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLV 120
           R+  L  ++   ++++ S     ++ FGA V +       K+ ++IVG +E      G +
Sbjct: 61  RVRYLRKLLPELQIVNYSPQQAGKVFFGAWVEIENDEGETKQ-FRIVGPEEIYGDAKGYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARALI KE+ D+ SV  P G K + +  + +
Sbjct: 120 SIDSPMARALIKKEVDDVASVKTPTGYKDWYVTSIEY 156


>gi|312194554|ref|YP_004014615.1| GreA/GreB family elongation factor [Frankia sp. EuI1c]
 gi|311225890|gb|ADP78745.1| GreA/GreB family elongation factor [Frankia sp. EuI1c]
          Length = 160

 Score =  117 bits (294), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 2/156 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +  +T + +D+++ EL +     R  +   I  AR  GDL EN  Y AAKE Q   E
Sbjct: 1   MTQQTWLTQEAYDRLRSELDYLTTTGRTELANKIEAAREEGDLKENGGYHAAKEEQGKQE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ +L +++  A+V + +  +      G  V +  +   + + + I   ++      + 
Sbjct: 61  ARIRQLNDLLRDAKVGEAAAST-GVAGPGTVVEVRFQGDKETEKFLIGSREDHSAPIDVF 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
           S +SP+  A+ G + GD ++   P G   + EI+ V
Sbjct: 120 SPASPLGGAVTGHKAGDKVTYTLPNGRNASVEIVSV 155


>gi|227890813|ref|ZP_04008618.1| transcription elongation factor [Lactobacillus salivarius ATCC
           11741]
 gi|301301189|ref|ZP_07207345.1| transcription elongation factor GreA [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|227867222|gb|EEJ74643.1| transcription elongation factor [Lactobacillus salivarius ATCC
           11741]
 gi|300851188|gb|EFK78916.1| transcription elongation factor GreA [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 156

 Score =  117 bits (294), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 101/157 (64%), Gaps = 2/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +G +K++QEL   +  +R  II+ I  AR++GDLSEN+EY++AK+ Q   
Sbjct: 1   MAEKTFPMTLEGKEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFM 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ E++N++  AE+ID  ++  + +A G TV+  E +   +  YQIVG  EAD   G 
Sbjct: 61  EARIKEIQNMLNHAEIIDNKSIDENEVAVGKTVTFQEDDDEPE-TYQIVGAAEADPFEGK 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA  LIG +LGD++S++ PGG    +I+ V 
Sbjct: 120 ISNESPIASGLIGHKLGDVVSIDTPGGTMQVKIIDVK 156


>gi|83319925|ref|YP_424238.1| transcription elongation factor GreA [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|123740058|sp|Q2SSM5|GREA_MYCCT RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|83283811|gb|ABC01743.1| transcription elongation factor GreA [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 157

 Score =  117 bits (294), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +I +T +G ++++ EL+   +  RP++I+ + EAR  GDLSENA+Y AA+  Q   E
Sbjct: 1   MSKEIILTQEGLEELKAELKNLLEVTRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
            R+ E+E +I RA+VID S       +  G+TV  +       K  +IVG  EAD  S L
Sbjct: 61  ARIKEVETLINRAKVIDNSKTHSTGEVKIGSTVEFLSSLDHKTKEIKIVGAIEADPFSRL 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+A++GK++GD + +          I  + 
Sbjct: 121 ISNESPIAKAILGKKIGDTVEIKDILKPYKITIKSIK 157


>gi|42560844|ref|NP_975295.1| transcription elongation factor GreA [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|81400735|sp|Q6MTU9|GREA_MYCMS RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|42492340|emb|CAE76937.1| transcription elongation factor [Mycoplasma mycoides subsp.
           mycoides SC str. PG1]
 gi|301321466|gb|ADK70109.1| putative transcription elongation factor GreA [Mycoplasma mycoides
           subsp. mycoides SC str. Gladysdale]
          Length = 157

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +I +T +G ++++ EL+   +  RP++I+ + EAR  GDLSENA+Y AA+  Q   E
Sbjct: 1   MSKEIILTQEGLEELKAELKHLLKVVRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
            R+ E+E +I RA+VID S       +  G+TV  V       K  +IVG  EAD  S L
Sbjct: 61  ARIKEVETLINRAKVIDDSKTHSTGEVKIGSTVQFVSSLDNKLKEIKIVGAIEADPFSNL 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+A+IGK++   + +          I  + 
Sbjct: 121 ISNESPIAKAIIGKKVNTTVEIKDISKPYKITIKSIK 157


>gi|300871555|ref|YP_003786428.1| GreA/GreB family elongation factor [Brachyspira pilosicoli 95/1000]
 gi|300689256|gb|ADK31927.1| GreA/GreB family elongation factor [Brachyspira pilosicoli 95/1000]
          Length = 154

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/150 (39%), Positives = 99/150 (66%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P+T +G+DK++++L   +  E   +   I+EAR  GDL ENAEY AA+E Q L + ++++
Sbjct: 4   PITKEGYDKVKEKLSELKA-EFDTLPAIIAEAREKGDLKENAEYHAAREKQGLLQAQISK 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE+ +   E++D S M+ D + FG  V + +KNS     Y+IVG+ EAD+    ++I +P
Sbjct: 63  LESDLAVCEIVDPSKMNKDIVTFGKRVKVKDKNSNAVSEYRIVGELEADMSKNEITIVTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IAR L+ K++GD++++  P G+K  EIL++
Sbjct: 123 IARGLLTKKVGDVVTIKVPAGDKVLEILEI 152


>gi|163815694|ref|ZP_02207066.1| hypothetical protein COPEUT_01875 [Coprococcus eutactus ATCC 27759]
 gi|158448999|gb|EDP25994.1| hypothetical protein COPEUT_01875 [Coprococcus eutactus ATCC 27759]
          Length = 161

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 86/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   VT  G  KI++EL+  +  +R  I   I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MAEKKNVVTYSGLKKIEEELQDLKVNKRREIAAKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ +LE ++   EV+D   +    +  G  V + +    ++  Y IVG  +AD+ +  
Sbjct: 61  EARIEQLEAMLKNIEVVDEDEVDTGVVGIGCKVIVYDYEYDEEIEYDIVGSSQADIMNNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  AL G ++G+ + V AP GE  Y +L + 
Sbjct: 121 ISDESPVGMALKGAKVGEEVLVEAPDGEFKYRVLDIK 157


>gi|90961794|ref|YP_535710.1| transcription elongation factor [Lactobacillus salivarius UCC118]
 gi|90820988|gb|ABD99627.1| Transcription elongation factor [Lactobacillus salivarius UCC118]
          Length = 156

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 101/157 (64%), Gaps = 2/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +G +K++QEL   +  +R  II+ I  AR++GDLSEN+EY++AK+ Q   
Sbjct: 1   MAEKTFPMTLEGKEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFM 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ E++N++  AE+ID  ++  + +A G TV+  E +   +  YQIVG  EAD   G 
Sbjct: 61  EARIKEIQNMLNHAEIIDNKSIDENEVAVGKTVTFQEDDDEPE-TYQIVGAAEADPFEGK 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA  LIG +LGD++S++ PGG    +I+ V 
Sbjct: 120 ISNESPIASGLIGHKLGDVVSIDTPGGTMRVKIIDVK 156


>gi|329769158|ref|ZP_08260578.1| transcription elongation factor greA [Gemella sanguinis M325]
 gi|328839377|gb|EGF88955.1| transcription elongation factor greA [Gemella sanguinis M325]
          Length = 162

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 60/156 (38%), Positives = 96/156 (61%), Gaps = 4/156 (2%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T +G+D++ +EL   ++ +RP +I+ I  AR++GDLSEN+EY AAK+ Q   E R+
Sbjct: 8   EYQMTQEGYDQLVEELEHYKKVKRPEVIEKIKVARSFGDLSENSEYDAAKDEQGFIEQRI 67

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            E+E +I  A +I++   S   I  G TV+  E  +G  + Y+IVG  EA+     +S  
Sbjct: 68  LEMEQMIRYAVIIELDEKS-SAIRLGNTVTYQELPNGATETYKIVGSAEANPFEYKISNE 126

Query: 124 SPIARALIGKELGDIISVNAPGG---EKTYEILQVL 156
           SP+A+AL+GKE+GD+  V+ P G       +IL+V 
Sbjct: 127 SPVAQALLGKEVGDVAKVSLPTGPEDSMEIKILEVE 162


>gi|253699374|ref|YP_003020563.1| GreA/GreB family elongation factor [Geobacter sp. M21]
 gi|251774224|gb|ACT16805.1| GreA/GreB family elongation factor [Geobacter sp. M21]
          Length = 158

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 84/149 (56%), Gaps = 2/149 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           ++++G  ++Q+   +  + ERPR++K +++A A GD SENAEY  +K+     +  +  L
Sbjct: 6   ISAEGRKRLQERYDFLWETERPRMVKNMADAAAEGDRSENAEYIYSKKRLREIDRELRHL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
            + +   +V+           FG  V+  ++    ++ YQ+VG  E DV +G +S+ SP+
Sbjct: 66  GDRLKVVKVVYPPLNPSTVS-FGCWVTYEDEEGE-ERCYQLVGPDEFDVTAGKISVDSPV 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
            +AL+G+++ D I++  P G+    I+ +
Sbjct: 124 GKALLGRKVDDEITIKRPAGDLAVTIVAI 152


>gi|256420286|ref|YP_003120939.1| transcription elongation factor GreA [Chitinophaga pinensis DSM
           2588]
 gi|256035194|gb|ACU58738.1| transcription elongation factor GreA [Chitinophaga pinensis DSM
           2588]
          Length = 157

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/156 (33%), Positives = 95/156 (60%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     VT +  D++++EL + + + R  I +AI+EAR  GDL ENAEY AAKE Q ++E
Sbjct: 1   MSGINYVTKETLDQMREELSFLKTKGRAEIARAIAEAREKGDLKENAEYDAAKEAQGMHE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A LE+ I  A +++  ++   +++    V++    +     YQ+V ++EAD++   +
Sbjct: 61  AKVAILESAIATARIVEADSIDTSKVSILCKVTITNMANKKTVTYQLVSEKEADLKLNKI 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S++SPI + L+GK +G+I  V+AP G   ++I  + 
Sbjct: 121 SVTSPIGKGLLGKAVGEIADVHAPNGSLKFKIENIT 156


>gi|114565687|ref|YP_752841.1| GreA/GreB family elongation factor [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|122319142|sp|Q0B0N4|GREA_SYNWW RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|114336622|gb|ABI67470.1| GreA/GreB family elongation factor [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 159

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 94/158 (59%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++  + +T +G +K++ EL   +  +R  + + I +A A+GD++EN+EY+ AK  Q  
Sbjct: 1   MAEEKEVVLTKEGLEKLENELEHLKSVKREEVAERIKQAIAFGDITENSEYEDAKNEQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  LE  + +A +++   +  D ++ G+ ++L E  SG +    +V   E+ ++ G
Sbjct: 61  IEGRIISLEKTLKKARLMEDEDIRTDVVSLGSRITLKEMKSGREVTVTLVSSVESKLKDG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+ +A++GK++   +SV AP G   Y+I++V 
Sbjct: 121 KISDESPVGKAIMGKKVKSTVSVEAPAGTIKYKIIKVE 158


>gi|227486472|ref|ZP_03916788.1| transcription elongation factor [Anaerococcus lactolyticus ATCC
           51172]
 gi|227235653|gb|EEI85668.1| transcription elongation factor [Anaerococcus lactolyticus ATCC
           51172]
          Length = 157

 Score =  117 bits (293), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 3/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +K  + +T +  +K++ EL + + ++RP + + I  AR++GDLSENA+Y  AK  Q  
Sbjct: 1   MTEKKEVILTKEKLEKLEDELEYLKTKKRPEMAEKIKIARSFGDLSENADYDEAKNEQGE 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ++E++I  A+ I++   S      G TV L ++   +   Y+IVG  E++   G
Sbjct: 61  VESRIMKIEDMIRNAKTIEVDENSDTVG-VGNTVCLYDEEFEEDVEYKIVGTAESNPLEG 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+  A+IG ++ D + V  P G+  + I  + 
Sbjct: 120 YISNESPVGEAIIGHKINDRVEVETPNGKMYFVIKNIK 157


>gi|332686024|ref|YP_004455798.1| transcription elongation factor GreA [Melissococcus plutonius ATCC
           35311]
 gi|332370033|dbj|BAK20989.1| transcription elongation factor GreA [Melissococcus plutonius ATCC
           35311]
          Length = 157

 Score =  117 bits (293), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/156 (43%), Positives = 104/156 (66%), Gaps = 1/156 (0%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K+ P+T +G +K++QEL   +  +R  I++ I  AR++GDLSEN+EY++AK+ Q   
Sbjct: 1   MVEKVFPMTQEGKEKLEQELEELKTIKRKEIVERIKIARSFGDLSENSEYESAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LEN+I  A++ID   +  D I+ G TV   E   G+++ Y IVG  EAD  SG 
Sbjct: 61  EGRITTLENMIRFAQIIDNDGVDEDEISIGKTVVFTELPDGEEEEYTIVGSAEADPFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SPIA+ALIGK LG+ + +  PGG+   ++++V
Sbjct: 121 ISNDSPIAQALIGKHLGEEVIIETPGGDMKVKVIRV 156


>gi|329767531|ref|ZP_08259054.1| transcription elongation factor greA [Gemella haemolysans M341]
 gi|328835865|gb|EGF85587.1| transcription elongation factor greA [Gemella haemolysans M341]
          Length = 162

 Score =  117 bits (293), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 61/156 (39%), Positives = 95/156 (60%), Gaps = 4/156 (2%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T +G+DK+ +EL + ++ +RP +I+ I  AR++GDLSEN+EY AAK+ Q   E R+
Sbjct: 8   EYQMTQEGYDKLVEELEYYKKVKRPEVIEKIKIARSFGDLSENSEYDAAKDEQGFIEQRI 67

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            E+E +I  A +I++   S   I  G TV+  E   G  + Y+IVG  EA+     +S  
Sbjct: 68  LEMEQMIRYAVIIELDEKS-SAIRLGNTVTYQELPDGLTETYKIVGSAEANPFEYKISNE 126

Query: 124 SPIARALIGKELGDIISVNAPGG---EKTYEILQVL 156
           SP+A+AL+GKE+GD+  V+ P G       +IL V 
Sbjct: 127 SPVAQALLGKEVGDVAKVSLPTGPEDSMDIKILAVE 162


>gi|300813174|ref|ZP_07093548.1| transcription elongation factor GreA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|313124166|ref|YP_004034425.1| transcription elongation factor [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|300495832|gb|EFK30980.1| transcription elongation factor GreA [Lactobacillus delbrueckii
           subsp. bulgaricus PB2003/044-T3-4]
 gi|312280729|gb|ADQ61448.1| Transcription elongation factor [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 162

 Score =  117 bits (293), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 94/154 (61%), Gaps = 1/154 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +KI  +T++G  ++++EL+  +  +RP+I++ +  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 1   MPEKIYEMTAEGKKQLEEELQNLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+  +   +  A ++D   +  D ++ G TV++ E    + + Y+IVG  ++D   G 
Sbjct: 61  EERIDAVSEQLKYAVIVDTDAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
           +S  SPI +AL+G + G+ + +N      +Y+++
Sbjct: 121 ISNESPIGKALLGHKKGETVKINVDSANVSYDVV 154


>gi|323485861|ref|ZP_08091196.1| transcription elongation factor [Clostridium symbiosum WAL-14163]
 gi|323693200|ref|ZP_08107418.1| transcription elongation factor [Clostridium symbiosum WAL-14673]
 gi|323400849|gb|EGA93212.1| transcription elongation factor [Clostridium symbiosum WAL-14163]
 gi|323502683|gb|EGB18527.1| transcription elongation factor [Clostridium symbiosum WAL-14673]
          Length = 160

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T  G  + + EL+  +  +R  I + I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MAEKKNILTYAGLKQYEDELQDLKVNKRREIAQKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+  LE ++  AEV+    +  D+I+ G  V L++    ++  ++IVG  EA+     
Sbjct: 61  EARIEALEKLLKNAEVVVEDEIDLDKISVGCKVKLLDVEEDEEMEFKIVGSTEANSLQNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  AL+GK+ G+ + V    G   Y+IL++ 
Sbjct: 121 ISNESPVGHALLGKKEGETVQVETQAGMIHYKILEIQ 157


>gi|301167994|emb|CBW27580.1| transcription elongation factor [Bacteriovorax marinus SJ]
          Length = 154

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 90/151 (59%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T K FD++  E+    + ERP+  + I+ A   GD SENA+Y   K+     + R+  L
Sbjct: 1   MTPKCFDELSAEMENLLKVERPKTTQIIAWAAGNGDRSENADYIYGKKRLREIDRRLRFL 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  +  +EVID   MS +++ F ATV++ ++ +  K  Y IVG  E +V  G +S  SPI
Sbjct: 61  KKRLDDSEVIDPLKMSSEKVQFSATVTVEDEEAEVKV-YSIVGIDEVEVSKGKISWRSPI 119

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            RAL+GKE+ DI+S++AP G    EIL++ +
Sbjct: 120 GRALLGKEVEDIVSIDAPNGSFELEILKIEY 150


>gi|320324941|gb|EFW81013.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 157

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 87/157 (55%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T  G + +++EL +  +E RP I + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKI-ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V+  S     R+ FGA V +  +    K  ++IVG  E   ++  +
Sbjct: 60  RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIENEAGDLK-KFRIVGYDEIYGRNDYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE GD + VN P GEK + +  +++
Sbjct: 119 SIDSPMARALLKKEEGDEVLVNMPEGEKLWFVNSIVY 155


>gi|158312680|ref|YP_001505188.1| transcription elongation factor GreA [Frankia sp. EAN1pec]
 gi|158108085|gb|ABW10282.1| transcription elongation factor GreA [Frankia sp. EAN1pec]
          Length = 161

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +  +T + +++++ EL +     R  I   I  AR  GDL EN  Y AAKE Q   E
Sbjct: 1   MTQQTWLTQEAYNRLRSELDYLTGTWRTEIAAKIEAAREEGDLKENGGYHAAKEEQGKQE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ +L +++  A V   S+ +      G  V +      + + + I   ++      + 
Sbjct: 61  ARIRQLMDLLRDARVGQASSAASGEAGPGTIVEIRFPGEKETERFLIGSREDHSASIEVF 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155
           S +SP+  A+ G + GD +    P G   T EI+ V
Sbjct: 121 SPASPLGGAVTGHKAGDTVKYTLPNGRPATVEIVSV 156


>gi|291556889|emb|CBL34006.1| transcription elongation factor GreA [Eubacterium siraeum V10Sc8a]
          Length = 156

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/155 (34%), Positives = 93/155 (60%), Gaps = 1/155 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +  +TS+G   +++ L   +   R  I + I  A ++GDLSEN+EY  AK  Q + E
Sbjct: 1   MATQTTLTSQGLKDLEERLEHLKSVTRKEIAEKIKVALSFGDLSENSEYDEAKNEQGIVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             +AE+E  +  A+V+D   +S + +  G TV + +++ G K  + +VG +E D+++  +
Sbjct: 61  AEIAEIEATLKNAKVVDEDELSTEHVNIGNTVVIEDES-GKKIKFFLVGSKEVDMKAMKI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SPI +A IG++LG+ + V AP G K Y+I+++
Sbjct: 120 SDESPIGKACIGRKLGEEVLVEAPAGVKKYKIVEI 154


>gi|257066134|ref|YP_003152390.1| transcription elongation factor GreA [Anaerococcus prevotii DSM
           20548]
 gi|256798014|gb|ACV28669.1| transcription elongation factor GreA [Anaerococcus prevotii DSM
           20548]
          Length = 157

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 94/158 (59%), Gaps = 3/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  ++ ++ +  +K++ EL + + ++RP I + I  AR++GDLSENA+Y  AK  Q  
Sbjct: 1   MTENKEVILSKEYLEKLEDELEYLKTKKRPEIAEKIKVARSFGDLSENADYDEAKNEQGE 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+A++E++I  A+ I++   S +    G TV++ ++   +   Y+IVG  E++   G
Sbjct: 61  VESRIAKVEDMIRNAKTIEVIENSDEVG-VGNTVTVYDEEFDEDLEYKIVGTAESNPLEG 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+  ALIGK++ + + V+ P G+  + I  + 
Sbjct: 120 FISNESPVGAALIGKKVDERVEVSTPNGKMYFVIKNIK 157


>gi|297626874|ref|YP_003688637.1| Transcription elongation factor GreA [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922639|emb|CBL57216.1| Transcription elongation factor GreA [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 167

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 81/163 (49%), Gaps = 7/163 (4%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M DK  I +T   + K+Q+EL + + E R  I K I  A+A GDLSEN  Y AA+E Q  
Sbjct: 1   MSDKQTIWMTQDAYTKLQEELDYLKGEGRSLIAKKIGAAKAEGDLSENGGYHAAREEQGQ 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY----QIVGDQEAD 114
            E R+ +LE ++  AEV +      +  A        + +  D   +    + +   +  
Sbjct: 61  QELRIRQLEQMLQHAEVGEPQGAPDEVTAGSTVTVAYDGDPDDTDVFLLGSREMMGVDKS 120

Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           V + + S  SP+  A++G+  GD +   AP G E + +I++V 
Sbjct: 121 VDTQVFSPQSPLGAAVLGRSAGDTVEYQAPNGREVSVKIMKVE 163


>gi|315925853|ref|ZP_07922059.1| transcription elongation factor GreA [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620817|gb|EFV00792.1| transcription elongation factor GreA [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 165

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 87/155 (56%), Gaps = 4/155 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +++ VT +G +K++ EL   +   R  +I+ +  AR YGDLSEN+EY  AK  Q+  E
Sbjct: 13  MSEEMIVTQEGLEKMKAELEQLKTVTRYEVIEKLRTARGYGDLSENSEYDEAKNEQSFVE 72

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ ELE+ I   +V++        I     V      +G    YQIVG  EA+++ G +
Sbjct: 73  GRIKELEHQIHHVKVVEEVQTDVVGIGSYVKV----ATAGKNLEYQIVGSAEANIKEGKL 128

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S +SP+   L+G + GD++ +  P G  TYEIL +
Sbjct: 129 SNASPVGEGLMGCQAGDVVEIEVPRGVVTYEILDI 163


>gi|300214537|gb|ADJ78953.1| Transcription elongation factor [Lactobacillus salivarius CECT
           5713]
          Length = 156

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 101/157 (64%), Gaps = 2/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +G +K++QEL   +  +R  II+ I  AR++GDLSEN+EY++AK+ Q   
Sbjct: 1   MAEKTFPMTLEGKEKLEQELEELRTTKRAEIIERIKIARSFGDLSENSEYESAKDEQAFM 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ E++N++  AE+ID  ++  + +A G TV+  E +   +  YQIVG  EAD   G 
Sbjct: 61  EARIKEIQNMLNHAEIIDNKSIDENEVAVGKTVTFQEDDDEPE-TYQIVGAAEADPFEGK 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA  LIG +LGDI+S++ PGG    +I+ V 
Sbjct: 120 ISNESPIASGLIGHKLGDIVSIDTPGGTMQVKIIDVK 156


>gi|323341649|ref|ZP_08081882.1| transcription elongation factor GreA [Erysipelothrix rhusiopathiae
           ATCC 19414]
 gi|322464074|gb|EFY09267.1| transcription elongation factor GreA [Erysipelothrix rhusiopathiae
           ATCC 19414]
          Length = 156

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 56/156 (35%), Positives = 93/156 (59%), Gaps = 2/156 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M ++IPVT  G D++ +ELR   + ERP +I+ +  ARA GDLSENA+Y AA++ Q   E
Sbjct: 1   MTERIPVTQAGLDELNRELRQLIEVERPEVIEDLKAARAQGDLSENADYDAARDRQARVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
            R+ E+E  +T+ E+ID       +    GATV++ +     ++ + IVG  EAD ++G 
Sbjct: 61  ARIREIEATLTKVEIIDGDKAKKHKTVGLGATVTIYDMEMEIEETFSIVGSVEADPENGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SP+A+A+   + GD++ V         ++L++
Sbjct: 121 LSNVSPLAQAMNEAKEGDVVEVQV-DEPYEVKVLKI 155


>gi|221633065|ref|YP_002522290.1| transcription elongation factor greA [Thermomicrobium roseum DSM
           5159]
 gi|254799575|sp|B9L0L0|GREA_THERP RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|221157000|gb|ACM06127.1| transcription elongation factor greA [Thermomicrobium roseum DSM
           5159]
          Length = 156

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 3/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           ++IP+T +G + ++QE  +  +  RP I + I EAR +GD+ ENA Y AAK  Q   EGR
Sbjct: 4   ERIPITREGLEALRQEYEYLVKHRRPEIARVIQEAREHGDIRENAAYDAAKHDQAFIEGR 63

Query: 63  MAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           + E+E ++ R E+I+  +      +  G+TV++  +  G+ + Y IVG  EA   +G +S
Sbjct: 64  IREIEELLKRVELIEQPTDGDRSVVRVGSTVTI--EIDGEIETYTIVGAIEAKPSAGRIS 121

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+ RAL+G   G+I+ +  P G     I++V 
Sbjct: 122 NESPVGRALLGHRAGEIVPIETPNGTLMARIIEVQ 156


>gi|312959745|ref|ZP_07774261.1| transcription elongation factor GreB [Pseudomonas fluorescens WH6]
 gi|311285911|gb|EFQ64476.1| transcription elongation factor GreB [Pseudomonas fluorescens WH6]
          Length = 157

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 84/158 (53%), Gaps = 2/158 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K+ +T +G + +++EL +  +E+RP   + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKL-ITKEGHEALKKELDYLWREKRPDTTRKVTWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V++       ++ FGA V +  +    K  ++IVG  E   +   +
Sbjct: 60  RRVRYLRKRLEDMRVVEYMPEQEGKVFFGAWVDIENEKGETK-RFRIVGYDEIYDRMDYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI SP+ARAL+ KE+ D   V  P GE  + I  + ++
Sbjct: 119 SIDSPMARALLRKEVDDEAIVQTPNGEVCWWITGIEYV 156


>gi|325678470|ref|ZP_08158086.1| transcription elongation factor GreA [Ruminococcus albus 8]
 gi|324109838|gb|EGC04038.1| transcription elongation factor GreA [Ruminococcus albus 8]
          Length = 158

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 87/150 (58%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           V+  G+ K+ +E  +    +R  + + + EAR++GDLSENAEY  AK  Q + E R+ EL
Sbjct: 7   VSKAGYAKLVEEKEYLVTVKRKEVAQKLKEARSFGDLSENAEYDEAKNEQAILESRINEL 66

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E +I+ A V+D   +S   I  G+ V L +    + +  QIVG  E+D  +G +S  SPI
Sbjct: 67  EILISNATVVDDDEVSVHEIGVGSYVKLKDLELDEVETLQIVGSTESDPDNGKISDESPI 126

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A +  ++GDI  V AP G   +E+L++ 
Sbjct: 127 GKAAMHMKVGDIFEVEAPAGMIKFEVLEIT 156


>gi|255671638|gb|ACU26399.1| transcription elongation factor [uncultured bacterium
           HF186_25m_30B18]
 gi|255671676|gb|ACU26436.1| transcription elongation factor [uncultured bacterium
           HF186_75m_14K15]
 gi|255671727|gb|ACU26485.1| transcription elongation factor [uncultured bacterium
           HF186_25m_13D19]
          Length = 163

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 84/155 (54%), Gaps = 1/155 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +GF++++ E       ERP I+  ++ A A GD SENAEY   K+     + R+
Sbjct: 5   KNYITPRGFNRLRAEHDQLWFVERPHIVDEVARAAAMGDRSENAEYIYGKKRLREIDRRL 64

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +   E++D +   G+RI FGATV+L     G +K   +VG  E +V    +S  
Sbjct: 65  RWLNKRLDMTEIVDPAIDRGERIFFGATVTLG-YMDGTEKQVALVGVDEIEVDKQRISWR 123

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SP+ R LIGK  GD +++N  G     EIL+V ++
Sbjct: 124 SPLGRLLIGKSEGDEVTLNHAGEVTPIEILEVAYL 158


>gi|224542870|ref|ZP_03683409.1| hypothetical protein CATMIT_02064 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524200|gb|EEF93305.1| hypothetical protein CATMIT_02064 [Catenibacterium mitsuokai DSM
           15897]
          Length = 162

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 51/160 (31%), Positives = 91/160 (56%), Gaps = 4/160 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K+ ++ +GF+K++ E       ERP +I+ I  AR+ GDLSENA+Y AA++ Q   E
Sbjct: 4   MDKKVQISREGFEKLKAERENLINVERPAVIEEIKLARSQGDLSENADYDAARDKQARIE 63

Query: 61  GRMAELENIITRAEVI-DISTMSGDRIAFGATVSLVE--KNSGDKKNYQIVGDQEADVQS 117
            R+ ELE ++  A +I     +    +  GATV++++  + + +   + I+G  E D   
Sbjct: 64  ERIKELEVMMQNAVIIGSDVKVDTHVVNLGATVTVLDLSEENPEPDTFTILGSTETDPLH 123

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           G +S  SP+A+AL+  ++GD+++V         EI+ + +
Sbjct: 124 GKISNESPLAKALMTHKIGDVVTVGV-AKPYDVEIVDIKY 162


>gi|167745534|ref|ZP_02417661.1| hypothetical protein ANACAC_00225 [Anaerostipes caccae DSM 14662]
 gi|317472902|ref|ZP_07932208.1| transcription elongation factor GreA [Anaerostipes sp. 3_2_56FAA]
 gi|167655255|gb|EDR99384.1| hypothetical protein ANACAC_00225 [Anaerostipes caccae DSM 14662]
 gi|316899622|gb|EFV21630.1| transcription elongation factor GreA [Anaerostipes sp. 3_2_56FAA]
          Length = 159

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 3/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +G   ++ EL+  +  +R  + + I EAR  GDLSENAEY AAK+ Q  
Sbjct: 1   MAEAKKNILTQEGLKTLEDELQDLKVVKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRD 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ELE I+  AEVID        I+ G  V L +    ++  Y IVG  EAD+ + 
Sbjct: 61  IEARIEELEQILKNAEVIDEE-FQHGVISLGCLVKLEDLTFKEEVTYHIVGSTEADILNN 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  +PI +AL+G ++GD++ V   G    Y++L V 
Sbjct: 120 KISNEAPIGKALLGAKIGDVVEVEGVGQVNQYKVLDVK 157


>gi|319942272|ref|ZP_08016587.1| transcription elongation factor GreB [Sutterella wadsworthensis
           3_1_45B]
 gi|319804145|gb|EFW01045.1| transcription elongation factor GreB [Sutterella wadsworthensis
           3_1_45B]
          Length = 185

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 6/160 (3%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T   + ++  E       ERP ++  ++ A + GD SEN +Y   K+     + R+
Sbjct: 19  KNYMTPACYRRLLDEREHLVNVERPDVVNVVAWAASNGDRSENGDYLYGKKRLREIDRRI 78

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   I  AEV+D +        F     L     G+++  +IVG  EAD + G VS  
Sbjct: 79  RFLNKRIESAEVVDPAVHPETDQVFFGATVLYCNQRGEERKIRIVGIDEADAEHGDVSWI 138

Query: 124 SPIARALIGKELGDIISVNA------PGGEKTYEILQVLW 157
           SPIAR  + +  GD + +        P G  T EIL+V +
Sbjct: 139 SPIARVFLRRHEGDEVKLPTPATSTHPAGVDTLEILEVTY 178


>gi|289643503|ref|ZP_06475621.1| transcription elongation factor GreA [Frankia symbiont of Datisca
           glomerata]
 gi|289506687|gb|EFD27668.1| transcription elongation factor GreA [Frankia symbiont of Datisca
           glomerata]
          Length = 160

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 66/157 (42%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +  +T + +D++++EL       R  I   I  AR  GDL EN  Y AAKE Q   E
Sbjct: 1   MSQQTWLTQEAYDRLREELDHLTGTGRVEIANKIEAAREEGDLKENGGYHAAKEEQGKLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ +L +++  A V             G  V +      + + + I   ++      + 
Sbjct: 61  SRIRQLTDLLRDARVGQAPQFD-GAAGPGTVVEVRFPGDDETERFLIGSREDHSTSLEVY 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
           S  SP+  A+ G   GD ++   P G   T  I+ V 
Sbjct: 120 SAQSPLGGAVSGHRAGDTVTYTLPNGRSATVRIVTVE 156


>gi|223986210|ref|ZP_03636228.1| hypothetical protein HOLDEFILI_03538 [Holdemania filiformis DSM
           12042]
 gi|223961824|gb|EEF66318.1| hypothetical protein HOLDEFILI_03538 [Holdemania filiformis DSM
           12042]
          Length = 156

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 84/154 (54%), Gaps = 1/154 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           DKI VT +G +++++E        R  +I+ +  ARA GDLSENA+Y AA++ Q   E R
Sbjct: 4   DKIYVTQEGLEELKKEQENLIHVVRQEVIEDLKAARAQGDLSENADYDAARDRQAQVEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELE ++   E+ID    S      G+TV + E ++     + IVG  EAD  +G +S 
Sbjct: 64  IRELEVMLNNIEIIDDKQGSVRVAKIGSTVKIEELDTHQIDEFTIVGSVEADPLNGKLSN 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +P+A A++  ++G  + V         +IL++ 
Sbjct: 124 VTPLAEAILEHKVGQTVEVLV-DEPYQVKILEIR 156


>gi|12045138|ref|NP_072949.1| transcription elongation factor GreA [Mycoplasma genitalium G37]
 gi|255660457|ref|ZP_05405866.1| transcription elongation factor GreA [Mycoplasma genitalium G37]
 gi|1346176|sp|P47524|GREA_MYCGE RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|1045978|gb|AAC71504.1| transcription elongation factor GreA [Mycoplasma genitalium G37]
 gi|166078978|gb|ABY79596.1| transcription elongation factor GreA [synthetic Mycoplasma
           genitalium JCVI-1.0]
          Length = 161

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K  +T +GF ++++EL    Q +RP II+ + EAR  GDLSENA+Y AAK  Q   E R
Sbjct: 4   NKNYLTQEGFKQLEKELENLIQVKRPEIIRLLQEARDQGDLSENADYDAAKAQQGEIETR 63

Query: 63  MAELENIITRAEVIDISTMSGD--RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           +AE+++I+  A++I          +++ G+TV + + +S   + Y IVG  EA+ +   +
Sbjct: 64  IAEIQDILANAKLISDHQAKTKVTKVSLGSTVEIYDYSSKSNEKYTIVGTLEANPEEHKI 123

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SP+A A+ G+ +GD   V         +IL++
Sbjct: 124 SNESPLALAIYGRLIGDECDVVGIEVPYRVKILKI 158


>gi|257784990|ref|YP_003180207.1| transcription elongation factor GreA [Atopobium parvulum DSM 20469]
 gi|257473497|gb|ACV51616.1| transcription elongation factor GreA [Atopobium parvulum DSM 20469]
          Length = 159

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 58/156 (37%), Positives = 87/156 (55%), Gaps = 2/156 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             +I +T +G  K+  EL +R+ E+   I++ I EAR +GDLSEN+EY AAKE Q+ NE 
Sbjct: 4   TKEIVLTPEGRQKLVDELAYREGEKHDEIVERIKEARGFGDLSENSEYDAAKEEQSHNES 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ E+  I++ A+V++  +     +A G TV L +   G    Y IVG  E +     +S
Sbjct: 64  RINEIRQILSVAKVVEGGSKRKVTVAIGTTVELADAK-GKTTKYVIVGTTETNSLEHKIS 122

Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
             SP   ALIG + GD +    P G+ K Y I+ + 
Sbjct: 123 NESPAGEALIGHKKGDEVEFTTPNGKVKKYTIISIT 158


>gi|225016228|ref|ZP_03705420.1| hypothetical protein CLOSTMETH_00131 [Clostridium methylpentosum
           DSM 5476]
 gi|224950986|gb|EEG32195.1| hypothetical protein CLOSTMETH_00131 [Clostridium methylpentosum
           DSM 5476]
          Length = 163

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 86/153 (56%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            +  +T +G  K+++EL   +  +R  +   I  A ++GDLSEN+EY  AK  Q + E R
Sbjct: 9   KQTILTGEGLSKLEEELEELKTVKRQEVAAKIKVALSFGDLSENSEYDEAKNEQAMVEAR 68

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +A++E ++    V+D S +  D ++ G+ V L +    +   Y IVG  EAD   G +S 
Sbjct: 69  IAQVEAMLKNVHVLDDSDLPTDIVSIGSKVLLKDIEFDEDVEYYIVGSTEADPSEGKISD 128

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SP+ +AL+G  +GD + V  P G   +E+L++
Sbjct: 129 ESPVGKALLGHRVGDRVEVEVPSGMIEFEVLEI 161


>gi|331703265|ref|YP_004399952.1| transcription elongation factor [Mycoplasma mycoides subsp. capri
           LC str. 95010]
 gi|256384044|gb|ACU78614.1| transcription elongation factor GreA [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|256384876|gb|ACU79445.1| transcription elongation factor GreA [Mycoplasma mycoides subsp.
           capri str. GM12]
 gi|296455679|gb|ADH21914.1| transcription elongation factor GreA [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
 gi|328801820|emb|CBW53973.1| Transcription elongation factor [Mycoplasma mycoides subsp. capri
           LC str. 95010]
          Length = 157

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 88/157 (56%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +I +T +G ++++ EL++  +  RP++I+ + EAR  GDLSENA+Y AA+  Q   E
Sbjct: 1   MSKEIILTQEGLEELKAELKYLLEVVRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
            R+ E+E +I RA+VID S       +  G+TV  V       K  +IVG  EAD  S L
Sbjct: 61  ARIKEVETLINRAKVIDDSKTHSTGEVKIGSTVQFVSSLDNKLKEIKIVGAIEADPFSNL 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+A+IGK++   + +          I  + 
Sbjct: 121 ISNESPIAKAIIGKKVNTTVEIKDISKPYKITIKSIK 157


>gi|307298990|ref|ZP_07578792.1| GreA/GreB family elongation factor [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306915415|gb|EFN45800.1| GreA/GreB family elongation factor [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 157

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 87/156 (55%), Gaps = 2/156 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  K I +T +GF+ +++EL   +++    I + I EAR  GDLSEN+EY  AK  Q   
Sbjct: 1   MKKKVIYLTQEGFNGMKEELESLRKKLMYDIAERIKEARELGDLSENSEYDEAKNEQGRI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           + R+ +LE I+  AE+I+           G  V L+  ++ +K  ++IV  QEA++  G 
Sbjct: 61  DSRIKQLEEILNNAEIIEDDGDLSTV-KLGYVVELLNIDTNEKSQFRIVNAQEANIFEGK 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SPI R ++  ++ +++ V  P G   Y+IL +
Sbjct: 120 ISSDSPIGRGVLTHKVNEVVRVKTPAGWAKYKILTI 155


>gi|229589215|ref|YP_002871334.1| transcription elongation factor [Pseudomonas fluorescens SBW25]
 gi|229361081|emb|CAY47944.1| transcription elongation factor [Pseudomonas fluorescens SBW25]
          Length = 157

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 84/158 (53%), Gaps = 2/158 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K+ +T +G + +++EL +  +E+RP   + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKL-ITKEGHEALKKELDYLWREKRPDTTRKVTWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V++       ++ FGA V +  +    K  ++IVG  E   +   +
Sbjct: 60  RRVRYLRKRLEDMRVVEYMPEQEGKVFFGAWVDIENEQGETK-RFRIVGYDEIYERMDYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SI SP+ARAL+ KE+ D   V  P G+  + I  + ++
Sbjct: 119 SIDSPMARALLRKEVDDEAIVQTPSGDVCWWITGIEYV 156


>gi|300987223|ref|ZP_07178060.1| transcription elongation factor GreB [Escherichia coli MS 200-1]
 gi|300306258|gb|EFJ60778.1| transcription elongation factor GreB [Escherichia coli MS 200-1]
          Length = 170

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 82/143 (57%), Gaps = 1/143 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 13  MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 72

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 73  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 131

Query: 122 ISSPIARALIGKELGDIISVNAP 144
           I SP+ARAL+ KE+GD+  VN P
Sbjct: 132 IDSPMARALLKKEVGDLAVVNNP 154


>gi|162147888|ref|YP_001602349.1| transcription elongation factor greB [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786465|emb|CAP56047.1| putative transcription elongation factor greB [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 199

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 86/153 (56%), Gaps = 2/153 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            VT  G   ++ EL    ++ERPRI+  +S A   GD SEN +Y   K+     + R+  
Sbjct: 41  YVTPAGMAAMRGELNALLRDERPRIVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRF 100

Query: 66  LENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           L   I +A V+D +     DR+ FGATV+ V      ++   IVG  E+D+ +G VS++S
Sbjct: 101 LTRRIEKAIVVDPAAQTRRDRVFFGATVTYV-TEDDTERTVVIVGVDESDLAAGQVSLAS 159

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+ARAL+G  +GD + +  P G +  EIL++ +
Sbjct: 160 PVARALLGGRVGDEVRLLTPAGAEMIEILRIAY 192


>gi|73666717|ref|YP_302733.1| transcription elongation factor GreA [Ehrlichia canis str. Jake]
 gi|72393858|gb|AAZ68135.1| transcription elongation factor GreA [Ehrlichia canis str. Jake]
          Length = 170

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 72/163 (44%), Positives = 110/163 (67%), Gaps = 6/163 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M ++ P+T  GF+K  +      + ERP+IIK+ISEAR  GDLSENAEY AA+E Q L E
Sbjct: 9   MNERFPITKSGFEK-LELELESLKHERPKIIKSISEARELGDLSENAEYHAARERQGLIE 67

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKN----SGDKKNYQIVGDQEADVQ 116
            ++ ELE+  +RAEVID+S +SGD + FGATV++   +    + D+  Y+IVG+ E D+ 
Sbjct: 68  SKIMELESKRSRAEVIDVSNLSGDTVMFGATVTMSIYDEQTGNTDEVVYKIVGEYEVDIS 127

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
             ++SI SP+  +L+GK+ GD++ V  P G+   Y+I+++ +I
Sbjct: 128 KQMISIKSPLVLSLLGKKEGDVVEVRTPKGDYKIYKIIKIEFI 170


>gi|160895078|ref|ZP_02075852.1| hypothetical protein CLOL250_02628 [Clostridium sp. L2-50]
 gi|156863509|gb|EDO56940.1| hypothetical protein CLOL250_02628 [Clostridium sp. L2-50]
          Length = 160

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 87/157 (55%), Gaps = 1/157 (0%)

Query: 1   MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  V T  G  KI++EL+  +  +R  I   I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MAEKKQVVTYTGLKKIEEELQDLKVNKRREIAAKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ +LE I+   EV+D   +  + +  G TV++ +    ++  + IVG  EAD+    
Sbjct: 61  EARIEQLEAILKNVEVVDEDEVDTEVVGIGRTVTVYDYEFDEEVVFHIVGSTEADIMKNK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  AL G  +G+ + V AP GE  Y IL + 
Sbjct: 121 ISDESPVGMALKGARVGEEVIVEAPDGEFKYRILDIK 157


>gi|289449476|ref|YP_003475259.1| transcription elongation factor GreA [Clostridiales genomosp. BVAB3
           str. UPII9-5]
 gi|289184023|gb|ADC90448.1| transcription elongation factor GreA [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 160

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/153 (35%), Positives = 96/153 (62%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           ++I +T +GF+ +++EL  R+   R  + + I  A ++GDLSEN+EY  AK+ Q  NEGR
Sbjct: 5   EQIEMTLEGFNHLKEELEHRKIVVRSEVAERIKVALSFGDLSENSEYDDAKQAQAENEGR 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E I+ +  VID   +S   +  G+   L ++ +G++  Y IVG +E ++    +S 
Sbjct: 65  IMEIEAILKKVRVIDNDEISKTNVTLGSAFVLRDEATGEETQYTIVGAKEENIFENKISS 124

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SP+ + ++GK+ G +ISV AP G+  Y+I+++
Sbjct: 125 DSPVGQQVLGKKKGSVISVKAPIGQLKYKIVKI 157


>gi|325685811|gb|EGD27883.1| transcription elongation factor GreA [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 162

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 94/154 (61%), Gaps = 1/154 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +KI  +T++G  ++++EL+  +  +RP+I++ +  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 1   MPEKIYEMTAEGKKQLEEELQNLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+  +   +  A ++D   +  D ++ G TV++ E    + + Y+IVG  ++D   G 
Sbjct: 61  EERIDAVSEQLKYAVIVDTDAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
           VS  SPI +AL+G + G+ + +N      +Y+++
Sbjct: 121 VSNESPIGKALLGHKKGETVKINVDSANVSYDVV 154


>gi|58040290|ref|YP_192254.1| transcription elongation factor GreB [Gluconobacter oxydans 621H]
 gi|58002704|gb|AAW61598.1| Transcription elongation factor GreB [Gluconobacter oxydans 621H]
          Length = 168

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/162 (34%), Positives = 92/162 (56%), Gaps = 6/162 (3%)

Query: 1   MVDK----IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQ 56
           M +K      ++ KG   ++ EL+   Q+ERPRI++ +S A   GD SENA+YQ  K   
Sbjct: 1   MAEKTPLSHYLSPKGAVVMRAELKELAQKERPRIVEIVSWAAGNGDRSENADYQYGKRRL 60

Query: 57  NLNEGRMAELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
              + RM  L   +  A ++D +   + DR+ FGATV+ V+++   +    I+G  E+D+
Sbjct: 61  REIDRRMRFLGKRLENAVIVDPAAQTTRDRVFFGATVTYVDED-DVEHTVTILGVDESDL 119

Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             G VS+ SP+ARAL+   +GD+  +  P G    EIL++++
Sbjct: 120 ARGEVSLMSPVARALMRTRVGDVAMLQTPRGPVEIEILKIVY 161


>gi|315286030|gb|EFU45468.1| transcription elongation factor GreB [Escherichia coli MS 110-3]
 gi|324014609|gb|EGB83828.1| transcription elongation factor GreB [Escherichia coli MS 60-1]
          Length = 154

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 82/143 (57%), Gaps = 1/143 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 13  MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 72

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D S     ++ FGA V +   + G    ++IVG  E   +   +S
Sbjct: 73  RVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYIS 131

Query: 122 ISSPIARALIGKELGDIISVNAP 144
           I SP+ARAL+ KE+GD+  VN P
Sbjct: 132 IDSPMARALLKKEVGDLAVVNTP 154


>gi|90407158|ref|ZP_01215346.1| transcription elongation factor [Psychromonas sp. CNPT3]
 gi|90311734|gb|EAS39831.1| transcription elongation factor [Psychromonas sp. CNPT3]
          Length = 163

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 81/162 (50%), Gaps = 7/162 (4%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +GF  +Q EL    +E RP I + ++ A + GD S+NA+Y+  K +    + 
Sbjct: 1   MRTNLITPEGFKTLQTELEHLWREYRPEITRKVTWAASLGDRSDNADYKENKRILRQIDS 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD------V 115
           R+  L   + +  +I  S    +++ FGA +S+       K  ++IVG  E         
Sbjct: 61  RIRFLTKRLQQVSIISPSKQQANKVFFGAKLSIENDEGEIKN-FKIVGPDEIYQRGTLQT 119

Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +   +SI SP+ARAL+  E+ D   V  P G +T+ IL + +
Sbjct: 120 RKDYISIDSPMARALLKLEVDDEAQVKTPTGIQTWYILTIDY 161


>gi|320109162|ref|YP_004184752.1| GreA/GreB family elongation factor [Terriglobus saanensis SP1PR4]
 gi|319927683|gb|ADV84758.1| GreA/GreB family elongation factor [Terriglobus saanensis SP1PR4]
          Length = 157

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 90/146 (61%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
            K++++++  + E    +   I  A A GDLSENAEY +AK+ Q      + +L+  +  
Sbjct: 7   KKLEEQIKQLEYELTNELPAEIKRAVALGDLSENAEYHSAKQRQEFVNAHLGQLKKRMAE 66

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
             +++++ +  DRI FG+T+ + +    ++  Y++V  +E+DV  GL+S +SPI R+L+G
Sbjct: 67  LSLVNLANIPHDRIGFGSTIVVFDTTKNEELTYKLVTSEESDVTQGLISTTSPIGRSLVG 126

Query: 133 KELGDIISVNAPGGEKTYEILQVLWI 158
           K++GD ++V  P G++  E+L++  I
Sbjct: 127 KQVGDTVTVVTPNGKRELEVLKLTTI 152


>gi|221135013|ref|ZP_03561316.1| transcription elongation factor [Glaciecola sp. HTCC2999]
          Length = 159

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 77/158 (48%), Gaps = 2/158 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  K   +T  G+  +++E  +  + ER  I K ++ A   GD S+NA+YQ  K      
Sbjct: 1   MTSKANLITPNGYRLLKEEEDYLWRVERHEITKKVTWAAGLGDRSDNADYQTNKRRLRQI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
             R+  L   +    V+  S     ++ FGA V+L E   G+ K  QIVG  E    +  
Sbjct: 61  HSRVRFLRKRMEALTVVSPSPEQVGKVYFGAWVTL-ETEEGEVKKVQIVGSDEIYKHTSP 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SI SP+ARA++GK + D   VN P G   Y IL + +
Sbjct: 120 CSIDSPLARAMVGKTIDDEAVVNMPDGPIYYTILAIEY 157


>gi|262371975|ref|ZP_06065254.1| transcription elongation factor GreB [Acinetobacter junii SH205]
 gi|262312000|gb|EEY93085.1| transcription elongation factor GreB [Acinetobacter junii SH205]
          Length = 162

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 77/156 (49%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G D +  EL+    +ERP I K ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MKSNLITRTGHDLLVAELKKLWHDERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D       ++ FGA V +       K    +  D+  D     +S
Sbjct: 61  RVRYLGKRLEELKIVDYVPEQEGKVYFGAWVEIENDAGEQKTLRIVGVDEIYDHHPQHIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ K++ D + V  P G+K + I  + +
Sbjct: 121 IESPMARALLSKQVDDEVEVITPLGKKLWYINSIRY 156


>gi|268609180|ref|ZP_06142907.1| transcription elongation factor GreA [Ruminococcus flavefaciens
           FD-1]
          Length = 156

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/149 (34%), Positives = 90/149 (60%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           ++ + +DK+  EL      +R  + + +  AR+YGDLSENAEY  AK  Q + E  +AEL
Sbjct: 6   MSRESYDKLVAELNDLIINKRKEVAERLKVARSYGDLSENAEYDEAKNEQAILEAHIAEL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  I  AE++D S +S D I   + +++   ++G  + + IV    A+V+ G +S +SPI
Sbjct: 66  QYTIDNAEIVDDSNISVDEIGMSSKITIKRLDTGKIETFTIVSTNHANVREGKISDASPI 125

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
            +A + K +GD+  V+AP GE  +E++++
Sbjct: 126 GKAAMKKRVGDVFIVDAPAGELKFEVVEI 154


>gi|320528944|ref|ZP_08030036.1| transcription elongation factor GreA [Selenomonas artemidis F0399]
 gi|320138574|gb|EFW30464.1| transcription elongation factor GreA [Selenomonas artemidis F0399]
          Length = 150

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 2/150 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G++K+ ++L + +   R  + + +  A A GDLSEN+EY  AK  Q   EG + EL
Sbjct: 2   LTEDGYNKLVEKLNYLKSVRRIEVAERLKAAIALGDLSENSEYDDAKNEQAFLEGEIQEL 61

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           EN I  +++I         +  G+ V++ +    + + + IVG  EAD   G +S  SP+
Sbjct: 62  ENKIRNSDIIKAGDG--KSVTIGSRVTVKDLEFDEDETFLIVGSTEADPDEGKISNESPL 119

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
             AL+G+++G +I+V+AP G   Y+I+ + 
Sbjct: 120 GMALLGQKIGKVINVSAPAGMIRYKIVDIK 149


>gi|116747675|ref|YP_844362.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans
           MPOB]
 gi|116696739|gb|ABK15927.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans
           MPOB]
          Length = 155

 Score =  116 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 83/153 (54%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K+P+T  G+ ++ +EL + +   RP +I+ + EAR  G   EN +Y  A+E   + + ++
Sbjct: 2   KVPITRLGYHRLLRELFFLRHVVRPEVIEELQEARTGGIKIENQQYMLARERHMVLQKKI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            +LE  +   E++        +  FG  V +    +G+ + YQ+VG  E++V  G +SI 
Sbjct: 62  QDLERKLASCEIVVGRKFFFKQAEFGTIVVIQNIETGETQRYQLVGPYESNVVDGKLSID 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           SP+ R L+G+  G+ + V  P G + Y ++ + 
Sbjct: 122 SPVGRHLVGRREGEEVLVYTPAGVRMYRVVSIT 154


>gi|304384708|ref|ZP_07367054.1| transcription elongation factor GreA [Pediococcus acidilactici DSM
           20284]
 gi|304328902|gb|EFL96122.1| transcription elongation factor GreA [Pediococcus acidilactici DSM
           20284]
          Length = 161

 Score =  116 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D+   P+T  G  K+++EL   + E RP++I+ I  AR++GDLSEN+EY++AK+ Q++
Sbjct: 1   MADEKRYPMTLDGKQKLEEELETLKTETRPQVIERIKIARSFGDLSENSEYESAKDEQSM 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+  +E+++  AE+ID   +  + ++ G  V   E    + + Y IVG  EAD  SG
Sbjct: 61  VESRINTIEHMLHYAEIIDDEAIDSNEVSLGRVVEFQELPDEEPEEYTIVGAAEADPMSG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA+ L+GK++GD++++  PGG+   +IL V 
Sbjct: 121 KISNDSPIAKGLLGKKVGDVVTIATPGGDMKVKILTVK 158


>gi|292670844|ref|ZP_06604270.1| transcription elongation factor GreA [Selenomonas noxia ATCC 43541]
 gi|292647465|gb|EFF65437.1| transcription elongation factor GreA [Selenomonas noxia ATCC 43541]
          Length = 156

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 86/157 (54%), Gaps = 3/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K + +T  G++K+ ++L + +   R  + + +  A A GDLSEN+EY  AK  Q   
Sbjct: 1   MTEKKVMLTEDGYNKLVEKLDYLKSVRRIEVAERLKAAIALGDLSENSEYDDAKNEQAFL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG + ELE  I  +++I         +  G+ V + +    +++ + IVG  EAD   G 
Sbjct: 61  EGEIQELETKIRNSDIIKAGDG--KSVTMGSRVKVKDLEFDEEETFLIVGSTEADPDEGK 118

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SP+  AL+G+++  +I VNAP G   Y+I+ + 
Sbjct: 119 ISNESPLGMALLGQKINRVIKVNAPAGIIQYKIIDIK 155


>gi|227550518|ref|ZP_03980567.1| elongation factor GreA [Enterococcus faecium TX1330]
 gi|227180419|gb|EEI61391.1| elongation factor GreA [Enterococcus faecium TX1330]
          Length = 198

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 103/157 (65%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K+  +T +G +K+++EL   +  +R  II+ I  AR +GDLSEN+EY++AK+ Q   
Sbjct: 40  MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 99

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  +EN+I  A++ID   +  D ++ G TV+ +E   G+++ Y IVG  EAD  SG 
Sbjct: 100 EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 159

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK   D +++  PGG+   +I++V 
Sbjct: 160 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKVE 196


>gi|227511608|ref|ZP_03941657.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC
           11577]
 gi|227085102|gb|EEI20414.1| transcription elongation factor GreA [Lactobacillus buchneri ATCC
           11577]
          Length = 155

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G+ KI+ E+   +  +RP  IK++++ARA GDLSENAEY AAK      E R+  L
Sbjct: 8   ITKAGYQKIKDEINQLEN-DRPIKIKSLADARALGDLSENAEYSAAKRDLRHLESRLRFL 66

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  +++   S      +  G  V+    +    + YQIVG  E D+ +G +SI+SPI
Sbjct: 67  RKELQYSKIYTPSDNDN--VEVGKYVTFEFLDDKSTETYQIVGTPEVDIDNGKISIASPI 124

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
             AL+    G+I+++ AP      +I ++ 
Sbjct: 125 GAALLNHHTGEIVTIQAPNLTYQVKIKEIK 154


>gi|319892663|ref|YP_004149538.1| Transcription elongation factor GreA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162359|gb|ADV05902.1| Transcription elongation factor GreA [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464299|gb|ADX76452.1| transcription elongation factor GreA [Staphylococcus
           pseudintermedius ED99]
          Length = 158

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 97/154 (62%), Gaps = 2/154 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +G++K+++EL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 5   KQYPMTQEGYEKLEKELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E ++  A +I+ +  +   +  G TV+ VE    D+++YQIVG  E+D  +G +S 
Sbjct: 65  IQRIETMLRHALIIEDTGDNH-VVQIGKTVTFVELPGNDEESYQIVGSAESDAFNGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPG-GEKTYEILQV 155
            SP+A+ALIGK++ D + V  P  GE   +I+ +
Sbjct: 124 ESPMAQALIGKQVDDEVRVPLPNGGEMNVKIVDI 157


>gi|199597924|ref|ZP_03211349.1| transcription elongation factor GreA [Lactobacillus rhamnosus
           HN001]
 gi|229550850|ref|ZP_04439575.1| transcription elongation factor GreA [Lactobacillus rhamnosus
           LMS2-1]
 gi|258507251|ref|YP_003170002.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG]
 gi|258538438|ref|YP_003172937.1| transcription elongation factor GreA [Lactobacillus rhamnosus Lc
           705]
 gi|199591181|gb|EDY99262.1| transcription elongation factor GreA [Lactobacillus rhamnosus
           HN001]
 gi|229315800|gb|EEN81773.1| transcription elongation factor GreA [Lactobacillus rhamnosus
           LMS2-1]
 gi|257147178|emb|CAR86151.1| Transcription elongation factor [Lactobacillus rhamnosus GG]
 gi|257150114|emb|CAR89086.1| Transcription elongation factor [Lactobacillus rhamnosus Lc 705]
 gi|259648617|dbj|BAI40779.1| transcription elongation factor GreA [Lactobacillus rhamnosus GG]
          Length = 165

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV    +T  G   ++QE+   +   RP  IK ++EA A GD SENAEY AAK      E
Sbjct: 1   MVTYHEITPAGLANLKQEVADLKAI-RPAKIKNLAEAAALGDRSENAEYSAAKRELRQLE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+  L+ +I  A+V   +    +    G  V+L   +  D+  Y++VG  EA + +  +
Sbjct: 60  GRLRYLDKLIRYAKVTTPAAA--NLADIGNWVTLEFDDDQDEDTYELVGPAEAGMGAAKL 117

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +I+SP+  A+    +GD ++V AP G     ++ +
Sbjct: 118 AINSPLGAAVRRHHVGDTVTVTAPSGTYQVTVMAI 152


>gi|104774331|ref|YP_619311.1| transcription elongation factor GreA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103423412|emb|CAI98285.1| Transcription elongation factor GreA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|325126126|gb|ADY85456.1| Transcriptional elongation factor [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 162

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 94/154 (61%), Gaps = 1/154 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T++G  ++++EL+  +  +RP+I++ +  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 1   MPEKTYEMTAEGKKQLEEELQTLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+  +   +  A ++D + +  D ++ G TV++ E    + + Y+IVG  ++D   G 
Sbjct: 61  EERINAISEQLKYAVIVDTAAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
           VS  SPI +AL+G + G+ + +N      +Y+++
Sbjct: 121 VSNESPIGKALLGHKKGETVKINVDSANVSYDVV 154


>gi|289626983|ref|ZP_06459937.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646809|ref|ZP_06478152.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867499|gb|EGH02208.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 157

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T  G + +++EL +  +E RP I + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKI-ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V+  S     R+ FGA V +  +    K  ++IVG  E   ++  +
Sbjct: 60  RRVRYLRKRLEDMRVVHYSPEQEGRVFFGAWVEIENEAGDLK-KFRIVGYDEIYGRNDYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ KE GD + VN P  EK + +  +++
Sbjct: 119 SIDSPMARALLKKEEGDEVLVNTPEVEKLWFVNSIVY 155


>gi|303256877|ref|ZP_07342891.1| transcription elongation factor GreB [Burkholderiales bacterium
           1_1_47]
 gi|330998874|ref|ZP_08322601.1| transcription elongation factor GreB [Parasutterella
           excrementihominis YIT 11859]
 gi|302860368|gb|EFL83445.1| transcription elongation factor GreB [Burkholderiales bacterium
           1_1_47]
 gi|329576088|gb|EGG57607.1| transcription elongation factor GreB [Parasutterella
           excrementihominis YIT 11859]
          Length = 191

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 81/156 (51%), Gaps = 2/156 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T   ++++  E +     ERP ++  ++ A + GD SENA+YQ  K+     + R+
Sbjct: 27  KNYMTRACYNRLLDERKNLVLVERPNVVNVVAWAASNGDRSENADYQYGKQRLREIDRRI 86

Query: 64  AELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             L   I  +EVID       D+I FGAT+    +  GD+   +IVG  EAD   G VS 
Sbjct: 87  RFLNKRIEASEVIDIDKRPPTDQIFFGATIVYANEQ-GDESKIRIVGIDEADASVGDVSW 145

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            SPIAR  +    GD + +  P G K  EIL+V ++
Sbjct: 146 ISPIARVFLKHFEGDTVLLPTPKGVKKLEILEVTYV 181


>gi|213622659|ref|ZP_03375442.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213855714|ref|ZP_03383954.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 128

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/128 (45%), Positives = 93/128 (72%), Gaps = 1/128 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           R+ ++E  ++ A+VID++ M  + R+ FGATV+++  ++ +++ Y+IVGD EAD +  L+
Sbjct: 61  RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLI 120

Query: 121 SISSPIAR 128
           S++SPIAR
Sbjct: 121 SVNSPIAR 128


>gi|310641883|ref|YP_003946641.1| transcription elongation factor [Paenibacillus polymyxa SC2]
 gi|309246833|gb|ADO56400.1| Transcription elongation factor [Paenibacillus polymyxa SC2]
          Length = 159

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 95/154 (61%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +++ +T +G  K+++EL+  +  +R  + + +  A +YGDL EN+EY +AK+ Q   E R
Sbjct: 4   EEVLLTKEGLAKLEEELKELKTVKRKELAERLKLAISYGDLKENSEYHSAKDDQAFMETR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  LE ++T+A ++D S +    ++ G+TV L +    +K  Y++V   EADV    +S 
Sbjct: 64  IMVLEKMLTKARIVDESNLDLKTVSIGSTVILNDIEFSEKVEYKVVSPAEADVLDNKISY 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ +AL+GKE+G II V+AP     YE+L++ 
Sbjct: 124 ESPLGKALLGKEVGSIIHVDAPMAVIKYELLEIK 157


>gi|226951512|ref|ZP_03821976.1| transcription elongation factor GreB [Acinetobacter sp. ATCC 27244]
 gi|226837748|gb|EEH70131.1| transcription elongation factor GreB [Acinetobacter sp. ATCC 27244]
          Length = 158

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 79/156 (50%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G D +  EL+    +ERP I K ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MKSNLITRTGHDLLVAELKRLWHDERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D       ++ FGA V +  +    K    +  D+  D     +S
Sbjct: 61  RVRYLGKRLEELKIVDYVPEQEGKVYFGAWVEIENEAGEQKILRIVGVDEIYDHHPQHIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ K++ D + V+ P G+K + I  + +
Sbjct: 121 IESPMARALLTKQVDDEVEVHTPLGKKVWYINSIRY 156


>gi|227894423|ref|ZP_04012228.1| transcription elongation factor GreA [Lactobacillus ultunensis DSM
           16047]
 gi|227863793|gb|EEJ71214.1| transcription elongation factor GreA [Lactobacillus ultunensis DSM
           16047]
          Length = 153

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   ++ +RPR IK +  ARA GDLSEN EY  AK      + R+  L
Sbjct: 7   MTPEGYKQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AE+  + T    ++  G +V L   +  D + Y+IVG  EAD+ +G +S  SP+
Sbjct: 66  GKQLKYAEI--VKTKDDGKVDLGKSVVLKFDDDDDTEQYKIVGRMEADLAAGKISFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A++ KE G  ++V AP GE    I++V 
Sbjct: 124 GQAIMKKEAGTTVAVEAPAGEYKVTIVEVK 153


>gi|297559077|ref|YP_003678051.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296843525|gb|ADH65545.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 166

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +D+++ EL       R  I + I  AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 11  WLTQEAYDRLKSELDHLSGSGRIEIAEKIEAAREEGDLKENGGYHAAKEEQGKMEARILQ 70

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  I+  A V +        +  G TV++      D+  + +   +E+     + S  SP
Sbjct: 71  LTEILRTARVGEAPHTE-GVVGPGMTVTVKFDGDDDEVTFLLASREESGSPIDVYSPRSP 129

Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQ 154
           +  A+ GK +G+ +S   P G+    EI+ 
Sbjct: 130 LGSAINGKRVGENVSYTLPNGKSLGVEIID 159


>gi|57238811|ref|YP_179947.1| transcription elongation factor greA [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57160890|emb|CAH57795.1| transcription elongation factor GreA [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 162

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 72/163 (44%), Positives = 110/163 (67%), Gaps = 6/163 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M ++ P+T  GF+K  +      + ERP+IIK+ISEAR  GDLSENAEY AA+E Q L E
Sbjct: 1   MNERFPITKAGFEK-LELELESLKYERPQIIKSISEARELGDLSENAEYHAARERQGLVE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG----DKKNYQIVGDQEADVQ 116
            ++ ELE+  +RAEVID++ +SGD + FGATV++   +      D+  YQIVG+ E+D+ 
Sbjct: 60  SKIMELESKKSRAEVIDVANLSGDTVMFGATVTMSIYDEQTGSTDEVIYQIVGEYESDIS 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
             ++SI SP+  +L+GK+ GD++ V  P G+   Y+I+++ +I
Sbjct: 120 KRMISIKSPLVISLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 162


>gi|270290410|ref|ZP_06196635.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4]
 gi|270281191|gb|EFA27024.1| transcription elongation factor GreA [Pediococcus acidilactici 7_4]
          Length = 161

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 2/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D+   P+T  G  K+++EL   + E RP++I+ I  AR++GDLSEN+EY++AK+ Q++
Sbjct: 1   MADEKRYPMTLDGKQKLEEELETLKTETRPQVIEQIKIARSFGDLSENSEYESAKDEQSM 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+  +E+++  AE+ID   +  + ++ G  V   E    + + Y IVG  EAD  SG
Sbjct: 61  VESRINTIEHMLHYAEIIDDEAIDSNEVSLGRVVEFQELPDEEPEEYTIVGAAEADPMSG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA+ L+GK++GD++++  PGG+   +IL V 
Sbjct: 121 KISNDSPIAKGLLGKKVGDVVTIATPGGDMKVKILTVK 158


>gi|332995753|gb|AEF05808.1| transcription elongation factor GreB [Alteromonas sp. SN2]
          Length = 159

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G+ ++ QE      E+RP I K ++ A   GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITRAGYQRLVQEHDHLWFEKRPEITKIVTWAAGLGDRSENADYTFNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120
           R+  L  ++   +++D S     ++ FGA V +       K  ++IVG +E  D Q   +
Sbjct: 61  RVRYLRKLLPELKIVDYSAEQEGKVFFGAWVEIENYEGEVK-RFRIVGPEEIYDDQKKYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+GK++ +   V  P G K + I  + +
Sbjct: 120 SIDSPMARALLGKQIDEDFGVTTPDGFKLWYINSIKY 156


>gi|91791609|ref|YP_561260.1| transcription elongation factor GreB [Shewanella denitrificans
           OS217]
 gi|91713611|gb|ABE53537.1| transcription elongation factor GreB [Shewanella denitrificans
           OS217]
          Length = 166

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 2/154 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T++G  K+  EL +  +E RP I K ++ A + GD SENA+Y+  K L    +GR+ 
Sbjct: 10  NLITAEGLAKLTHELNYLWREYRPEITKKVAWAASLGDRSENADYKENKRLLRQIDGRVR 69

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ-SGLVSIS 123
            L   I   +V+  +     ++ FGA V +     G KK ++IVG  E      G +SI 
Sbjct: 70  FLRKRIEALKVVPYAAEQEGKVFFGAWVEIENDE-GVKKRFRIVGPDEIYGDAKGYISID 128

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL+ KE+ D  SV  P GE+ + I ++ +
Sbjct: 129 SPMARALLKKEVDDDASVLTPTGEQFWYINKIFY 162


>gi|210618382|ref|ZP_03291947.1| hypothetical protein CLONEX_04180 [Clostridium nexile DSM 1787]
 gi|210148938|gb|EEA79947.1| hypothetical protein CLONEX_04180 [Clostridium nexile DSM 1787]
          Length = 144

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 58/144 (40%), Positives = 84/144 (58%), Gaps = 1/144 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T  G   +++EL   +   R  +   I EAR  GDLSENAEY AAK+ Q   
Sbjct: 1   MAEKKTLLTYAGLKALEEELENLKVVRRKEVAVKIKEAREQGDLSENAEYDAAKDEQRDI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ E+E I+  AEV+    +  D+I  G TVSL +    ++  Y+IVG  EA+  +G 
Sbjct: 61  EARIEEIEKILKNAEVVVEDEVDFDKINVGCTVSLYDVEFEEEVEYKIVGSTEANSLAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNA 143
           +S  SP+ +ALIGK++GD + V A
Sbjct: 121 ISNESPLGKALIGKKVGDKVEVEA 144


>gi|58578740|ref|YP_196952.1| transcription elongation factor greA [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58616800|ref|YP_195999.1| transcription elongation factor greA [Ehrlichia ruminantium str.
           Gardel]
 gi|58416412|emb|CAI27525.1| Transcription elongation factor greA [Ehrlichia ruminantium str.
           Gardel]
 gi|58417366|emb|CAI26570.1| Transcription elongation factor greA [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 166

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 72/163 (44%), Positives = 110/163 (67%), Gaps = 6/163 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M ++ P+T  GF+K  +      + ERP+IIK+ISEAR  GDLSENAEY AA+E Q L E
Sbjct: 5   MNERFPITKAGFEK-LELELESLKYERPQIIKSISEARELGDLSENAEYHAARERQGLVE 63

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG----DKKNYQIVGDQEADVQ 116
            ++ ELE+  +RAEVID++ +SGD + FGATV++   +      D+  YQIVG+ E+D+ 
Sbjct: 64  SKIMELESKKSRAEVIDVANLSGDTVMFGATVTMSIYDEQTGSTDEVIYQIVGEYESDIS 123

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVLWI 158
             ++SI SP+  +L+GK+ GD++ V  P G+   Y+I+++ +I
Sbjct: 124 KRMISIKSPLVISLLGKKEGDVVEVKTPKGDYRIYKIIKIEFI 166


>gi|116514426|ref|YP_813332.1| transcription elongation factor [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|116093741|gb|ABJ58894.1| transcription elongation factor GreA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
          Length = 162

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 93/154 (60%), Gaps = 1/154 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T++G  ++++EL+  +  +RP+I++ +  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 1   MPEKTYEMTAEGKKQLEEELQTLKFVKRPQIVERLKIARSYGDLSENSEYDAAKDEQMRL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+  +   +  A ++D   +  D ++ G TV++ E    + + Y+IVG  ++D   G 
Sbjct: 61  EERINAISEQLKYAVIVDTVAVDPDEVSIGKTVTVTEVGEDEPETYEIVGSSQSDPFHGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
           VS  SPI +AL+G + G+ + +N      +Y+++
Sbjct: 121 VSNESPIGKALLGHKKGETVKINVDSANVSYDVV 154


>gi|313633191|gb|EFS00071.1| transcription elongation factor GreA [Listeria seeligeri FSL
           N1-067]
          Length = 133

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/131 (36%), Positives = 79/131 (60%)

Query: 26  ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
           +R  +++ I  AR++GDLSEN+EY +AK+ Q   EGR+  +EN    A++ID +      
Sbjct: 1   KRKEVVERIKIARSFGDLSENSEYDSAKDEQAFVEGRITTIENXXRNAQIIDAAESHNGL 60

Query: 86  IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
           +  G TV+ VE   G+++ Y IVG  EAD   G +S  SPIA+ L+G + G+ +++  P 
Sbjct: 61  VTLGNTVTFVELPDGEEETYTIVGSAEADPFEGKISNDSPIAKGLLGHKEGEEVTIQTPA 120

Query: 146 GEKTYEILQVL 156
           G+   +I ++ 
Sbjct: 121 GDMNVKIEKIT 131


>gi|328480203|gb|EGF49134.1| transcription elongation factor GreA [Lactobacillus rhamnosus MTCC
           5462]
          Length = 165

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV    +T  G   ++QE+   +   RP  IK ++EA A GD SENAEY AAK      E
Sbjct: 1   MVTYHEITPAGLANLKQEVADLKAI-RPAKIKNLAEAAALGDRSENAEYSAAKRELRQLE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+  L+ +I  A+V   +    +    G  V+L   +  D+  Y++VG  EA + +  +
Sbjct: 60  GRLRYLDKLIRYAKVTTPAAA--NLADIGNWVTLKFDDDQDEDTYELVGPAEAGMGAAKL 117

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +I+SP+  A+    +GD ++V AP G     ++ +
Sbjct: 118 AINSPLGAAVRRHYVGDTVTVTAPSGTYQVTVMAI 152


>gi|294651152|ref|ZP_06728486.1| transcription elongation factor GreB [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822948|gb|EFF81817.1| transcription elongation factor GreB [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 158

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 79/156 (50%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T  G D +  EL+    +ERP I K ++ A + GD SENA+YQ  K+L    + 
Sbjct: 1   MKSNLITRTGHDLLVAELKKLWHDERPEITKKVNWAASLGDRSENADYQYNKQLLRKIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L   +   +++D       ++ FGA V +  +    K    +  D+  D     +S
Sbjct: 61  RVRYLGKRLEELKIVDYVPEQEGKVYFGAWVEIENEAGEQKILRIVGIDEIYDHHPQHIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I SP+ARAL+ K++ D + V+ P G+K + I  + +
Sbjct: 121 IESPMARALLTKQVDDEVEVHTPLGKKVWYINSIRY 156


>gi|209542505|ref|YP_002274734.1| transcription elongation factor GreB [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530182|gb|ACI50119.1| transcription elongation factor GreB [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 180

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 86/153 (56%), Gaps = 2/153 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            VT  G   ++ EL    ++ERPRI+  +S A   GD SEN +Y   K+     + R+  
Sbjct: 22  YVTPAGMAAMRGELNALLRDERPRIVDIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRF 81

Query: 66  LENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           L   I +A V+D +     DR+ FGATV+ V      ++   IVG  E+D+ +G VS++S
Sbjct: 82  LTRRIEKAIVVDPAAQTRRDRVFFGATVTYV-TEDDTERTVVIVGVDESDLAAGQVSLAS 140

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+ARAL+G  +GD + +  P G +  EIL++ +
Sbjct: 141 PVARALLGGRVGDEVRLLTPAGAEMIEILRIAY 173


>gi|239905833|ref|YP_002952572.1| transcription elongation factor GreA [Desulfovibrio magneticus
           RS-1]
 gi|259647640|sp|C4XLU8|GREA_DESMR RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|239795697|dbj|BAH74686.1| transcription elongation factor GreA [Desulfovibrio magneticus
           RS-1]
          Length = 164

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 64/156 (41%), Positives = 105/156 (67%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++ IP++ +GF +  +    R ++ERP +I AI EAR  GDL ENA Y+AA+E Q + E 
Sbjct: 1   MESIPISVEGFRR-LERELERLKKERPGVILAIKEAREEGDLRENAGYEAARERQGMLEA 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  +E+ ++R  VID++T+ G+++ FGATV + + ++GD K Y ++G  EA+   G +S
Sbjct: 60  RINYIESRMSRFNVIDLATLGGEQVIFGATVEIEDVDTGDVKKYTLLGPDEAEPSKGSIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SP+  AL+GK +GD I V+AP G+  YEI+ + +
Sbjct: 120 LLSPVGLALLGKFVGDEIVVDAPRGKINYEIVSIAF 155


>gi|307544299|ref|YP_003896778.1| transcription elongation factor GreB [Halomonas elongata DSM 2581]
 gi|307216323|emb|CBV41593.1| transcription elongation factor GreB [Halomonas elongata DSM 2581]
          Length = 193

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 1/153 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T++G ++++  L    + +RP +   + EA A GD SENA+Y   K+  N    R+ 
Sbjct: 37  NLITAEGAERLRGILDHLSRVKRPALSTKVGEAAALGDRSENADYTYNKKELNRVIARIR 96

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   +   +++D      DR+ FGA V+L ++N   +   +IVG  E D     +S+ +
Sbjct: 97  YLTKRLDELQIVDRLPADTDRVFFGAFVTLEDENGE-ELRLRIVGHDETDTGKHWISVDA 155

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+A+AL+GK L D  +V APGGE TY I ++ +
Sbjct: 156 PLAKALLGKGLDDEATVAAPGGETTYLITEIDY 188


>gi|227523817|ref|ZP_03953866.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC
           8290]
 gi|227089018|gb|EEI24330.1| transcription elongation factor GreA [Lactobacillus hilgardii ATCC
           8290]
          Length = 155

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G+ KI+ E+   +  +RP  IK++++ARA GDLSENAEY AAK      E R+  L
Sbjct: 8   ITKAGYQKIKDEINQLEN-DRPIKIKSLADARALGDLSENAEYSAAKRDLRHLESRLRFL 66

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  +++   S      +  G  V+    +    + YQIVG  E D+  G +SI+SPI
Sbjct: 67  RKELQYSKIYTPSDNDN--VEVGKYVTFEFLDDKSTETYQIVGTPEVDIDDGKISIASPI 124

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
             AL+    G+I+++ AP      +I ++ 
Sbjct: 125 GAALLNHHTGEIVTIQAPNLTYQVKIKEIK 154


>gi|119505414|ref|ZP_01627487.1| transcription elongation factor GreB [marine gamma proteobacterium
           HTCC2080]
 gi|119458692|gb|EAW39794.1| transcription elongation factor GreB [marine gamma proteobacterium
           HTCC2080]
          Length = 169

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 79/152 (51%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G  ++++EL+   + ERP +  A+  A A GD SEN +Y   K+     + R+  
Sbjct: 14  YITQEGEQRLREELKELWKVERPVVTAAVQAAAANGDRSENGDYIYGKKRLREIDSRVRF 73

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +    V+       ++  FGA V+L     G    ++IVG  E D+ +  +S  SP
Sbjct: 74  LRKRLDELIVVTAGPTDPEKAYFGAYVTLENTE-GQVHQWRIVGPDEFDISAQKLSCDSP 132

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + RAL+GK +   + + +P G KT+ +++V +
Sbjct: 133 LGRALLGKPIDAEVVIESPSGPKTWHLIEVRY 164


>gi|309775361|ref|ZP_07670366.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916878|gb|EFP62613.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 159

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/156 (32%), Positives = 92/156 (58%), Gaps = 2/156 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K  VT +G D++ +E        R  +I+ + EARA GDLSENA+Y AA++ Q   E R
Sbjct: 4   EKFLVTKEGLDELLKEQDNLIHVVRDEVIRELQEARAQGDLSENADYDAARDRQARVEAR 63

Query: 63  MAELENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           + +LE +I  AE+I  D  + +   I+ G+TV++ + ++ +++ Y IVG  EAD  +G +
Sbjct: 64  IRDLEAMIANAEIISGDKKSTNKKTISLGSTVTIQDLSTNEEETYTIVGSIEADPLNGKL 123

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  +P+A +L+  ++GD++ +         +++ + 
Sbjct: 124 SNITPLATSLMDHKVGDVVEIELAEEPYQVKVIDLK 159


>gi|149911350|ref|ZP_01899970.1| transcription elongation factor GreB [Moritella sp. PE36]
 gi|149805590|gb|EDM65593.1| transcription elongation factor GreB [Moritella sp. PE36]
          Length = 161

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/157 (31%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     +T  G++ + + L++  ++ERPR+ K +S A + GD S+NA+Y+  K L    +
Sbjct: 1   MAISNLITRVGWETLDKRLKFLWKQERPRVTKVVSWAASLGDRSDNADYKENKHLLRTID 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             +  L   +   E++D S      + FGA   L + N G     +IVG  E D +   V
Sbjct: 61  REIRFLVKRLEVLEIVDYSPQQDGTVYFGAYAELEDDN-GTVIQCRIVGRDELDSKRNFV 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ++ SP+A+ALIGK++ D   V+ P G KT+ I ++ +
Sbjct: 120 TVDSPMAKALIGKQVDDEAIVHTPAGSKTWYINKIQY 156


>gi|239979735|ref|ZP_04702259.1| transcription elongation factor GreA [Streptomyces albus J1074]
 gi|291451596|ref|ZP_06590986.1| transcription elongation factor [Streptomyces albus J1074]
 gi|291354545|gb|EFE81447.1| transcription elongation factor [Streptomyces albus J1074]
          Length = 165

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +++++ EL +     R  I K I  AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNQLKAELEYLSGPARTEISKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++ +A+V +     G            + +  D   + +   + A       S  SP
Sbjct: 70  LTQLLAQAKVGEPPADDGIVEPGMVVTIAFDGDPDDTLTFLMASREYASADIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   + GK++GD      P G++ + +IL 
Sbjct: 130 LGTGVNGKKVGDTAEYELPNGKRASVKILA 159


>gi|227508629|ref|ZP_03938678.1| transcription elongation factor GreA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227191961|gb|EEI72028.1| transcription elongation factor GreA [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 155

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G+ KI+ E+   +  +RP  IK++++ARA GDLSENAEY AAK      E R+  L
Sbjct: 8   ITKAGYQKIKDEINQLEN-DRPIKIKSLADARALGDLSENAEYSAAKRDLRHLESRLRFL 66

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  +++   S      +  G  V+    +    + YQIVG  E D+ +G +SI+SPI
Sbjct: 67  RKELQYSKIYTPSDNDN--VEVGKYVTFEFLDDKSTETYQIVGTPEVDIDNGKISIASPI 124

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
             AL+    G+I+++ AP      +I ++ 
Sbjct: 125 CAALLNHHTGEIVTIQAPNLTYQVKIKEIK 154


>gi|312868364|ref|ZP_07728564.1| transcription elongation factor GreA [Streptococcus parasanguinis
           F0405]
 gi|322390081|ref|ZP_08063616.1| transcription elongation factor GreA [Streptococcus parasanguinis
           ATCC 903]
 gi|311096109|gb|EFQ54353.1| transcription elongation factor GreA [Streptococcus parasanguinis
           F0405]
 gi|321143208|gb|EFX38651.1| transcription elongation factor GreA [Streptococcus parasanguinis
           ATCC 903]
          Length = 160

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    +K++QEL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLAEKEKLEQELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE++D   ++ D +A G TV++ E    D++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVDSDAVAVDEVAIGKTVTVQEVGETDEEVYSIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPI  ALIGK+ GD+++V  P G    +IL V 
Sbjct: 121 ISNESPIGHALIGKKTGDVVTVETPAGSYQVKILNVE 157


>gi|225873815|ref|YP_002755274.1| transcription elongation factor GreA [Acidobacterium capsulatum
           ATCC 51196]
 gi|225793182|gb|ACO33272.1| transcription elongation factor GreA [Acidobacterium capsulatum
           ATCC 51196]
          Length = 165

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 90/146 (61%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
            K+ ++++  + E    +   I +A A GDLSENAEY  AK+ Q     R+ +L+  +  
Sbjct: 7   KKLLEDIKQLEHELAHELPAEIKKAAALGDLSENAEYHMAKQRQEFVNARLGQLKKRMAE 66

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
             +++++ +  DR+AFG+TV + + +  +K  Y++V  +E+DV  GL+S +SPI RALIG
Sbjct: 67  LSLVNLANIPHDRVAFGSTVEVFDTSKDEKIEYKLVTSEESDVSKGLISTTSPIGRALIG 126

Query: 133 KELGDIISVNAPGGEKTYEILQVLWI 158
           K++GD  +V  P G +  E+L++  I
Sbjct: 127 KQVGDTATVVTPSGNRELEVLKLTTI 152


>gi|257138318|ref|ZP_05586580.1| transcription elongation factor GreB [Burkholderia thailandensis
           E264]
          Length = 166

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 62/137 (45%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL     E RP ++K +S A + GD SEN +Y   K      + R+
Sbjct: 28  KNYITPAGHKRLRDELLHLIDEARPEVVKLVSWAASNGDRSENGDYIYGKRRLREIDRRI 87

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEV+D S        F           G +    IVG  E D+  G VS  
Sbjct: 88  RFLTKRLDLAEVVDASRQENADQVFFGATVDYATQDGIEHTVTIVGIDEVDLDRGHVSWI 147

Query: 124 SPIARALIGKELGDIIS 140
           SPIA AL+   +GD ++
Sbjct: 148 SPIASALLKARVGDTVT 164


>gi|302874691|ref|YP_003843324.1| transcription elongation factor GreA [Clostridium cellulovorans
           743B]
 gi|307690697|ref|ZP_07633143.1| transcription elongation factor GreA [Clostridium cellulovorans
           743B]
 gi|302577548|gb|ADL51560.1| transcription elongation factor GreA [Clostridium cellulovorans
           743B]
          Length = 154

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 91/154 (59%), Gaps = 1/154 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + KI +T  G  K++ EL + +  +R  I +A+  ARA GDLSENA+Y AAK+ Q++ E 
Sbjct: 1   MSKIQLTEAGKQKLEDELNYLKSVKRVEIKEALKVARAQGDLSENADYSAAKDDQSITET 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AE+E+I+  AE+I+ ST + +      +  +   +  + +   +V   EAD ++  +S
Sbjct: 61  RIAEIESILKYAEIIEASTDA-NVFDVNKSAKVKFYDFDEIEVVTLVSSVEADAKNMKIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           I SP+  AL   E+G  +SV +P G    E++++
Sbjct: 120 IDSPLGMALHRLEVGKKVSVTSPDGSYDVEVIEI 153


>gi|294507431|ref|YP_003571489.1| transcription elongation factor greA [Salinibacter ruber M8]
 gi|294343759|emb|CBH24537.1| Transcription elongation factor greA [Salinibacter ruber M8]
          Length = 178

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 97/153 (63%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           + + +T +G +++++EL   + EER RI   I+EARA GDLSENAEY AAKE Q   E R
Sbjct: 24  ETVYMTEEGLEELKEELHQLKTEERSRIADEIAEARAKGDLSENAEYDAAKEEQGKLEAR 83

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ++E+ I RA ++D ST+   +    + V++   ++GD++ + +V ++EA++    +S+
Sbjct: 84  IKQIEDTIARARIVDESTVDDSKAYILSDVTVENLDTGDEQTFTLVSEEEANISENKISV 143

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SPI   L+ +E GD +S++ P G   ++I  +
Sbjct: 144 DSPIGEGLLAQEEGDEVSIDVPAGTVHFKIKDI 176


>gi|257893581|ref|ZP_05673234.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium 1,231,408]
 gi|260560508|ref|ZP_05832682.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium C68]
 gi|261209025|ref|ZP_05923430.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium TC 6]
 gi|289565163|ref|ZP_06445615.1| transcription elongation factor greA [Enterococcus faecium D344SRF]
 gi|293553245|ref|ZP_06673882.1| transcription elongation factor GreA [Enterococcus faecium E1039]
 gi|293563598|ref|ZP_06678044.1| transcription elongation factor GreA [Enterococcus faecium E1162]
 gi|293569322|ref|ZP_06680620.1| transcription elongation factor GreA [Enterococcus faecium E1071]
 gi|294615287|ref|ZP_06695163.1| transcription elongation factor GreA [Enterococcus faecium E1636]
 gi|294619052|ref|ZP_06698547.1| transcription elongation factor GreA [Enterococcus faecium E1679]
 gi|314939785|ref|ZP_07847005.1| transcription elongation factor GreA [Enterococcus faecium
           TX0133a04]
 gi|314942020|ref|ZP_07848880.1| transcription elongation factor GreA [Enterococcus faecium TX0133C]
 gi|314950014|ref|ZP_07853307.1| transcription elongation factor GreA [Enterococcus faecium TX0082]
 gi|314953536|ref|ZP_07856448.1| transcription elongation factor GreA [Enterococcus faecium TX0133A]
 gi|314992151|ref|ZP_07857598.1| transcription elongation factor GreA [Enterococcus faecium TX0133B]
 gi|314995129|ref|ZP_07860245.1| transcription elongation factor GreA [Enterococcus faecium
           TX0133a01]
 gi|257829960|gb|EEV56567.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium 1,231,408]
 gi|260073510|gb|EEW61838.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium C68]
 gi|260077064|gb|EEW64786.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium TC 6]
 gi|289162984|gb|EFD10832.1| transcription elongation factor greA [Enterococcus faecium D344SRF]
 gi|291588028|gb|EFF19878.1| transcription elongation factor GreA [Enterococcus faecium E1071]
 gi|291591845|gb|EFF23478.1| transcription elongation factor GreA [Enterococcus faecium E1636]
 gi|291594713|gb|EFF26095.1| transcription elongation factor GreA [Enterococcus faecium E1679]
 gi|291602655|gb|EFF32870.1| transcription elongation factor GreA [Enterococcus faecium E1039]
 gi|291604448|gb|EFF33936.1| transcription elongation factor GreA [Enterococcus faecium E1162]
 gi|313590620|gb|EFR69465.1| transcription elongation factor GreA [Enterococcus faecium
           TX0133a01]
 gi|313593292|gb|EFR72137.1| transcription elongation factor GreA [Enterococcus faecium TX0133B]
 gi|313594459|gb|EFR73304.1| transcription elongation factor GreA [Enterococcus faecium TX0133A]
 gi|313599197|gb|EFR78042.1| transcription elongation factor GreA [Enterococcus faecium TX0133C]
 gi|313640925|gb|EFS05505.1| transcription elongation factor GreA [Enterococcus faecium
           TX0133a04]
 gi|313643661|gb|EFS08241.1| transcription elongation factor GreA [Enterococcus faecium TX0082]
          Length = 159

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 103/157 (65%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K+  +T +G +K+++EL   +  +R  II+ I  AR +GDLSEN+EY++AK+ Q   
Sbjct: 1   MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  +EN+I  A++ID   +  D ++ G TV+ +E   GD++ Y IVG  EAD  SG 
Sbjct: 61  EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGDEEEYTIVGSAEADPFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK   D +++  PGG+   +I++V 
Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKVE 157


>gi|221194505|ref|ZP_03567562.1| transcription elongation factor GreA [Atopobium rimae ATCC 49626]
 gi|221185409|gb|EEE17799.1| transcription elongation factor GreA [Atopobium rimae ATCC 49626]
          Length = 159

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 59/156 (37%), Positives = 85/156 (54%), Gaps = 2/156 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             +I +T +G  K+  EL +R+ E+   I++ I EAR +GDLSEN+EY AAKE Q+ NE 
Sbjct: 4   TKEIVLTPEGRQKLVDELAYREGEKHDEIVERIKEARGFGDLSENSEYDAAKEEQSHNES 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ E+  I++ A+V++        +A G TV L +   G K  Y IVG  E +     +S
Sbjct: 64  RINEIRQILSVAKVVEGDKKRKITVAIGTTVELEDAK-GKKAKYVIVGTTETNSLEHKIS 122

Query: 122 ISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
             SP   ALIG + GD +    P G  K Y I  + 
Sbjct: 123 NESPAGEALIGHKKGDEVEFTTPNGNVKKYTITAIT 158


>gi|31544396|ref|NP_852974.1| transcription elongation factor greA [Mycoplasma gallisepticum str.
           R(low)]
 gi|81420953|sp|Q7NBS1|GREA_MYCGA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|31541240|gb|AAP56542.1| Transcription elongation factor greA (Transcript cleavage factor
           greA) [Mycoplasma gallisepticum str. R(low)]
 gi|284930439|gb|ADC30378.1| Transcription elongation factor greA (Transcript cleavage factor
           greA) [Mycoplasma gallisepticum str. R(high)]
 gi|284931203|gb|ADC31141.1| Transcription elongation factor greA (Transcript cleavage factor
           greA) [Mycoplasma gallisepticum str. F]
          Length = 159

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 81/154 (52%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T +G  K+Q ELR     +R  +IK I EAR  GDLSENA+Y +AK  Q+  E 
Sbjct: 4   TKKHLLTQEGLKKLQAELRLLVDVKRADVIKLIQEAREQGDLSENADYDSAKATQSEIES 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ E+++I+   E+I        R+  GA V++ + +      Y+IVG  E+D     +S
Sbjct: 64  RITEIQDILNHYEIIKEVDTKNKRVIVGAKVTIHDHSDECNYTYEIVGPIESDPAENKIS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+A+A++ K+ G+   V          I ++
Sbjct: 124 HESPVAKAIMDKKEGESAEVIGIEHPYKVTIKKI 157


>gi|302336411|ref|YP_003801618.1| GreA/GreB family elongation factor [Olsenella uli DSM 7084]
 gi|301320251|gb|ADK68738.1| GreA/GreB family elongation factor [Olsenella uli DSM 7084]
          Length = 157

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 60/158 (37%), Positives = 88/158 (55%), Gaps = 4/158 (2%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K I +T +G  K+  EL +R+ E R  I++ I EAR +GDLSENAEY AAKE Q+ N
Sbjct: 1   MANKEIILTPEGRQKLVDELAYREGERRDEIVERIKEARGFGDLSENAEYDAAKEEQSQN 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ E+  I+  A+V++           G TV L +   G K ++ IVG  E +     
Sbjct: 61  ESRVNEIRQILVAAKVVERGEGELSVS-IGTTVELEDAK-GKKTSFTIVGTTETNSLEHR 118

Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
           +S  SP    LIG  +GD +S   P G+ +TY ++ + 
Sbjct: 119 ISNESPAGAVLIGHVVGDEVSFTTPNGKLRTYTVVNIT 156


>gi|283769390|ref|ZP_06342289.1| putative transcription elongation factor GreA [Bulleidia extructa
           W1219]
 gi|283104047|gb|EFC05431.1| putative transcription elongation factor GreA [Bulleidia extructa
           W1219]
          Length = 157

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 57/158 (36%), Positives = 85/158 (53%), Gaps = 3/158 (1%)

Query: 1   MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M + KI VT +G  K+Q E        R ++   ++EARA GDLSENA+Y AA+E+Q   
Sbjct: 1   MSENKIYVTQEGLKKLQDEYNHLVHVVREQVKTELAEARAQGDLSENADYDAAREMQAQV 60

Query: 60  EGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           E R+AELE  +     +    T     +  GATV L   ++ +   Y IVG  EAD  +G
Sbjct: 61  EARIAELEINLQNYVLIDTTKTKDSTTVRIGATVQLEFLDTKEVNEYMIVGSTEADPLNG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  +P+A+A++  ++GD + VN  G      I+ V 
Sbjct: 121 KLSNETPLAQAILEHKVGDTVFVNV-GKPYQVIIISVK 157


>gi|242373910|ref|ZP_04819484.1| elongation factor GreA [Staphylococcus epidermidis M23864:W1]
 gi|242348464|gb|EES40066.1| elongation factor GreA [Staphylococcus epidermidis M23864:W1]
          Length = 158

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 94/155 (60%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +G+++++QEL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 5   KQYPMTQEGYEQLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E++I  A +I+      + +  G TV+ +E    ++++YQIVG  EAD   G +S 
Sbjct: 65  IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPG-GEKTYEILQVL 156
            SP+A ALIGK L D + V  P  GE   +I+ + 
Sbjct: 124 ESPMANALIGKGLNDEVRVPLPNGGEINVKIVDIK 158


>gi|294631104|ref|ZP_06709664.1| transcription elongation factor GreA [Streptomyces sp. e14]
 gi|292834437|gb|EFF92786.1| transcription elongation factor GreA [Streptomyces sp. e14]
          Length = 166

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 2/151 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + ++K++ EL +     R  I   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNKLKDELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           L  ++  A+V +    +   +A G  V++  + +  D   + +   + A       S  S
Sbjct: 70  LTQLLENAKVGEAPASTDGAVAPGMVVTIAFDGDEDDTLTFLLASREYASSDIETYSPQS 129

Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
           P+   +IG ++G+      P G+K +  IL+
Sbjct: 130 PLGSGVIGHKVGEDAEYELPNGKKASVTILK 160


>gi|295425713|ref|ZP_06818400.1| transcription elongation factor GreA [Lactobacillus amylolyticus
           DSM 11664]
 gi|295064729|gb|EFG55650.1| transcription elongation factor GreA [Lactobacillus amylolyticus
           DSM 11664]
          Length = 153

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 86/150 (57%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ KI+ E+   ++ +RPR IK + +AR+ GDLSEN EY  AK      + R+  L
Sbjct: 7   MTPEGYKKIEDEIARLKK-DRPRRIKILQQARSMGDLSENTEYTEAKRDLGHLQSRLRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AEVI+       ++  G+TV L   +    + YQIVG  EAD+  G  +  SP+
Sbjct: 66  GKQLKYAEVIEAKN--YGKVNMGSTVVLKFDDDEKTEEYQIVGRMEADLAKGKTAFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A++ ++ G  ++V+AP G+ +  I++V 
Sbjct: 124 GQAIMKQQAGSTVTVSAPAGDYSVTIVEVK 153


>gi|257064643|ref|YP_003144315.1| transcription elongation factor GreA [Slackia heliotrinireducens
           DSM 20476]
 gi|256792296|gb|ACV22966.1| transcription elongation factor GreA [Slackia heliotrinireducens
           DSM 20476]
          Length = 155

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 89/158 (56%), Gaps = 4/158 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +   +T +G +K++ EL + + E+R  + + I  AR +GD+SEN+EY  AK  Q + E
Sbjct: 1   MANDYVLTPEGKEKLEAELLYLENEKRAEVGERIKIAREFGDISENSEYDDAKNEQGMLE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+A++ +I+  A V++    S +R+  G+TV++     G ++ + IVG  EA+   G +
Sbjct: 61  VRIAQINDILANATVVEAPKRS-NRVTVGSTVTV--DMGGRERVFTIVGGAEANAAEGKI 117

Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           S  SP+   L+G + GD ++   P G K    +L +  
Sbjct: 118 SNDSPVGSVLLGSKKGDQLTTEGPTGRKIEITVLNIEH 155


>gi|169350015|ref|ZP_02866953.1| hypothetical protein CLOSPI_00755 [Clostridium spiroforme DSM 1552]
 gi|169293228|gb|EDS75361.1| hypothetical protein CLOSPI_00755 [Clostridium spiroforme DSM 1552]
          Length = 161

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 51/157 (32%), Positives = 93/157 (59%), Gaps = 3/157 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K+ +T  G +K++QE       ERP++I+ +  AR+ GDLSENA+Y AA+E Q   E R
Sbjct: 4   EKVLLTQSGLEKLEQERDRLINVERPKVIEELQLARSQGDLSENADYDAAREKQAHLESR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVE--KNSGDKKNYQIVGDQEADVQSGLV 120
           + E++ ++   E+I    M    +  G TV++++  +   + ++Y+IVG  E D  +G +
Sbjct: 64  IKEIDYMLQNVEIISEDQMDLKVVKPGTTVTILDLSETDAEPESYKIVGFTETDPLNGKI 123

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S  SP+A+A+IG ++ +I++V         +IL + +
Sbjct: 124 SNESPLAKAVIGHDVNEIVTVGV-AEPYDVKILNIEF 159


>gi|18310245|ref|NP_562179.1| transcription elongation factor GreA [Clostridium perfringens str.
           13]
 gi|110801097|ref|YP_695914.1| transcription elongation factor GreA [Clostridium perfringens ATCC
           13124]
 gi|110802369|ref|YP_698592.1| transcription elongation factor GreA [Clostridium perfringens
           SM101]
 gi|168205506|ref|ZP_02631511.1| transcription elongation factor GreA [Clostridium perfringens E
           str. JGS1987]
 gi|168213038|ref|ZP_02638663.1| transcription elongation factor GreA [Clostridium perfringens CPE
           str. F4969]
 gi|168217085|ref|ZP_02642710.1| transcription elongation factor GreA [Clostridium perfringens NCTC
           8239]
 gi|169344009|ref|ZP_02865000.1| transcription elongation factor GreA [Clostridium perfringens C
           str. JGS1495]
 gi|182624203|ref|ZP_02951989.1| transcription elongation factor GreA [Clostridium perfringens D
           str. JGS1721]
 gi|18144924|dbj|BAB80969.1| transcription elongation factor [Clostridium perfringens str. 13]
 gi|110675744|gb|ABG84731.1| transcription elongation factor GreA [Clostridium perfringens ATCC
           13124]
 gi|110682870|gb|ABG86240.1| transcription elongation factor GreA [Clostridium perfringens
           SM101]
 gi|169297917|gb|EDS80012.1| transcription elongation factor GreA [Clostridium perfringens C
           str. JGS1495]
 gi|170663031|gb|EDT15714.1| transcription elongation factor GreA [Clostridium perfringens E
           str. JGS1987]
 gi|170715452|gb|EDT27634.1| transcription elongation factor GreA [Clostridium perfringens CPE
           str. F4969]
 gi|177910617|gb|EDT72985.1| transcription elongation factor GreA [Clostridium perfringens D
           str. JGS1721]
 gi|182380772|gb|EDT78251.1| transcription elongation factor GreA [Clostridium perfringens NCTC
           8239]
          Length = 154

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 82/151 (54%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T +   K+++EL +R    R +I K   EA A+GD SENAEY+ A      N+ R+ 
Sbjct: 3   NYLTEENVRKLREELDYRMSVVRAKIAKEKLEAAAHGDRSENAEYKEACRNYRENDNRIQ 62

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L  +I+ A ++D  +     +   +   +      D+    +V   + D+++  +SI S
Sbjct: 63  YLLTMISTAIIVDEESNDKSTLGLNSKARIKFVEDDDEDVVTLVTTMDLDLENMCISIES 122

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
            + +AL+GK++GD++ V APGG  T E+L++
Sbjct: 123 DLGKALMGKKVGDVVEVEAPGGNYTVEVLEI 153


>gi|296875962|ref|ZP_06900021.1| transcription elongation factor GreA [Streptococcus parasanguinis
           ATCC 15912]
 gi|296433037|gb|EFH18825.1| transcription elongation factor GreA [Streptococcus parasanguinis
           ATCC 15912]
          Length = 160

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 64/157 (40%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    +K++ EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLAEKEKLELELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE++D   ++ D +A G TV++ E    D++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVDSDAVAVDEVAIGKTVTVQEVGETDEEVYSIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPI  ALIGK+ GD+++V  P G    +IL V 
Sbjct: 121 ISNESPIGHALIGKKTGDVVTVETPAGSYQVKILNVE 157


>gi|293374263|ref|ZP_06620591.1| transcription elongation factor GreA [Turicibacter sanguinis PC909]
 gi|325844834|ref|ZP_08168286.1| transcription elongation factor GreA [Turicibacter sp. HGF1]
 gi|292647096|gb|EFF65078.1| transcription elongation factor GreA [Turicibacter sanguinis PC909]
 gi|325489021|gb|EGC91409.1| transcription elongation factor GreA [Turicibacter sp. HGF1]
          Length = 156

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 91/157 (57%), Gaps = 2/157 (1%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T +G  K Q EL   QQ     I   + EARA GDLSENAEY AA+E Q + 
Sbjct: 1   MKEKQQHLTLEGIKKFQDELDHLQQVRMEEIKVKLQEARAQGDLSENAEYDAAREEQAMV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
             R+ EL+ I+  A VI+ S  + + I  G+TVS  E+ + ++  Y+IVG  EA+     
Sbjct: 61  YERIQELQYILKNAVVIE-SDENSEVITIGSTVSYQEEETDEQMTYKIVGSAEANPFEAK 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+AL+GK +GD+  V+ P G  T  IL V 
Sbjct: 120 ISNESPIAQALMGKRVGDVAMVSTPKGIVTVVILDVQ 156


>gi|228475181|ref|ZP_04059907.1| transcription elongation factor GreA [Staphylococcus hominis SK119]
 gi|314936274|ref|ZP_07843621.1| transcription elongation factor GreA [Staphylococcus hominis subsp.
           hominis C80]
 gi|228270792|gb|EEK12194.1| transcription elongation factor GreA [Staphylococcus hominis SK119]
 gi|313654893|gb|EFS18638.1| transcription elongation factor GreA [Staphylococcus hominis subsp.
           hominis C80]
          Length = 158

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 95/155 (61%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +G++K++QEL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 5   KQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E+++  A +I+      + I  G TV+ VE    ++++YQIVG  EAD   G +S 
Sbjct: 65  IQRIEHMLRYALIIE-DNGDNNVIQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPG-GEKTYEILQVL 156
            SP+A+ALIGK L D + V  P  GE   +I+ + 
Sbjct: 124 ESPMAKALIGKNLNDEVRVPLPNGGEMKVKIVDIK 158


>gi|223044081|ref|ZP_03614120.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Staphylococcus capitis SK14]
 gi|314933776|ref|ZP_07841141.1| transcription elongation factor GreA [Staphylococcus caprae C87]
 gi|222442475|gb|EEE48581.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Staphylococcus capitis SK14]
 gi|313653926|gb|EFS17683.1| transcription elongation factor GreA [Staphylococcus caprae C87]
          Length = 158

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 94/155 (60%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +G+++++QEL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 5   KQYPMTQEGYEQLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E++I  A +I+      + +  G TV+ VE    ++++YQIVG  EAD   G +S 
Sbjct: 65  IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPG-GEKTYEILQVL 156
            SP+A ALIGK L D + V  P  GE   +I+ + 
Sbjct: 124 ESPMANALIGKGLNDEVRVPLPNGGEMNVKIVDIK 158


>gi|295838659|ref|ZP_06825592.1| transcription elongation factor GreA [Streptomyces sp. SPB74]
 gi|197699092|gb|EDY46025.1| transcription elongation factor GreA [Streptomyces sp. SPB74]
          Length = 165

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + ++++++EL +     R  I K I EAR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNRLKEELEYLSGPARTEIAKKIEEAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +     G            + +  D   + +   + A       S  SP
Sbjct: 70  LTQLLQHAKVGEAPADDGIVEPGMVVTIAFDGDEDDTLTFLMASREYASSDIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   + GK++GD      P G+K + +IL 
Sbjct: 130 LGTGVNGKKVGDTAEYELPNGKKASVKILD 159


>gi|269125318|ref|YP_003298688.1| transcription elongation factor GreA [Thermomonospora curvata DSM
           43183]
 gi|268310276|gb|ACY96650.1| transcription elongation factor GreA [Thermomonospora curvata DSM
           43183]
          Length = 166

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 2/151 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T + +D+++ EL +     R  I + I  AR  GDL EN  Y AAKE Q   EGR+ 
Sbjct: 10  NWLTQEAYDRLKAELEYLSGPGRIEIAQKIEAAREEGDLRENGGYHAAKEEQGKIEGRIL 69

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +L++I+  + V +        +  G TV++  ++  ++  + +   +E+     + S  S
Sbjct: 70  QLQHILENSRVGEAPRTD-GVVGPGMTVTVAFEDDDEELTFLLASREESGAPIDVYSPQS 128

Query: 125 PIARALIGKELGDIISVNAPGGE-KTYEILQ 154
           P+  A+ GK++G+  +   P G   T EIL 
Sbjct: 129 PLGSAINGKKVGEKATYTLPNGRSMTVEILD 159


>gi|311778834|gb|ADQ08317.2| transcription elongation factor [Mycoplasma hyorhinis HUB-1]
 gi|330723604|gb|AEC45974.1| transcription elongation factor GreA [Mycoplasma hyorhinis MCLD]
          Length = 164

 Score =  113 bits (282), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/153 (33%), Positives = 92/153 (60%), Gaps = 1/153 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           ++I +T +  +  ++EL      ER ++I  I  AR  GDLSENAEY AA+E Q + E R
Sbjct: 8   EEIFLTKESLESYKKELNQLINVERNKVIDEIKSAREQGDLSENAEYDAAREKQGIIEAR 67

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E+I+++A++I+ + +  D I  G+ VS++   +    N QIVG  +A+     +S 
Sbjct: 68  ILEIESILSKAKLIENTGLKSDEITIGSKVSILNLKTQTSHNVQIVGSLDANPFQNKISN 127

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SP+A ALIG++ G+ + ++    + + +IL +
Sbjct: 128 LSPLASALIGRKAGEEVEIDV-SEKYSVQILSI 159


>gi|298245773|ref|ZP_06969579.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM
           44963]
 gi|297553254|gb|EFH87119.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM
           44963]
          Length = 172

 Score =  113 bits (282), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 86/153 (56%), Gaps = 1/153 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           + +T +G+ K ++ L + +  +R      + EA+  GD+SE++ Y+ AK  Q   EG + 
Sbjct: 16  VRLTPQGYTKNKERLDYLRNVKRREAADYVHEAKEAGDISESSAYEDAKNEQAKVEGEII 75

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATV-SLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           ELE+++  AEVI   ++          +   +E  SG K+ ++IV   EAD +SGL+S  
Sbjct: 76  ELEHLLAVAEVITPESLDRHDGTVRIGMKVELESESGAKRVFKIVETYEADPKSGLISDQ 135

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           SP+ +AL+G + GD ++V  PGG   Y IL + 
Sbjct: 136 SPVGKALMGHKEGDEVTVTTPGGVTGYTILSIT 168


>gi|69248024|ref|ZP_00604587.1| Prokaryotic transcription elongation factor GreA [Enterococcus
           faecium DO]
 gi|257880194|ref|ZP_05659847.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium 1,230,933]
 gi|257882995|ref|ZP_05662648.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium 1,231,502]
 gi|257888545|ref|ZP_05668198.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium 1,141,733]
 gi|257891422|ref|ZP_05671075.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium 1,231,410]
 gi|257897080|ref|ZP_05676733.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium Com12]
 gi|257899019|ref|ZP_05678672.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium Com15]
 gi|293377303|ref|ZP_06623507.1| transcription elongation factor GreA [Enterococcus faecium PC4.1]
 gi|294622139|ref|ZP_06701215.1| transcription elongation factor GreA [Enterococcus faecium U0317]
 gi|68194592|gb|EAN09082.1| Prokaryotic transcription elongation factor GreA [Enterococcus
           faecium DO]
 gi|257814422|gb|EEV43180.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium 1,230,933]
 gi|257818653|gb|EEV45981.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium 1,231,502]
 gi|257824599|gb|EEV51531.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium 1,141,733]
 gi|257827782|gb|EEV54408.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium 1,231,410]
 gi|257833645|gb|EEV60066.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium Com12]
 gi|257836931|gb|EEV62005.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium Com15]
 gi|291598340|gb|EFF29427.1| transcription elongation factor GreA [Enterococcus faecium U0317]
 gi|292643995|gb|EFF62101.1| transcription elongation factor GreA [Enterococcus faecium PC4.1]
          Length = 159

 Score =  113 bits (282), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 103/157 (65%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K+  +T +G +K+++EL   +  +R  II+ I  AR +GDLSEN+EY++AK+ Q   
Sbjct: 1   MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  +EN+I  A++ID   +  D ++ G TV+ +E   G+++ Y IVG  EAD  SG 
Sbjct: 61  EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK   D +++  PGG+   +I++V 
Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKVE 157


>gi|318056471|ref|ZP_07975194.1| transcription elongation factor GreA [Streptomyces sp. SA3_actG]
 gi|318080242|ref|ZP_07987574.1| transcription elongation factor GreA [Streptomyces sp. SA3_actF]
 gi|333026761|ref|ZP_08454825.1| putative transcription elongation factor GreA [Streptomyces sp.
           Tu6071]
 gi|332746613|gb|EGJ77054.1| putative transcription elongation factor GreA [Streptomyces sp.
           Tu6071]
          Length = 165

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + ++++++EL +     R  I K I EAR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNRLKEELEYLSGPARTEIAKKIEEAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +     G            + +  D   + +   + A       S  SP
Sbjct: 70  LTQLLQHAKVGEAPADDGIVEPGMVVTIAFDGDEDDTLTFLMASREYASSDIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   + GK++GD      P G+K + +IL 
Sbjct: 130 LGTGVNGKKVGDTAEYELPNGKKASVKILD 159


>gi|293572488|ref|ZP_06683467.1| transcription elongation factor GreA [Enterococcus faecium E980]
 gi|291607405|gb|EFF36748.1| transcription elongation factor GreA [Enterococcus faecium E980]
          Length = 159

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 103/157 (65%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K+  +T +G +K+++EL   +  +R  II+ I  AR +GDLSEN+EY++AK+ Q   
Sbjct: 1   MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  +EN+I  A++ID   +  D ++ G TV+ +E   G+++ Y IVG  EAD  SG 
Sbjct: 61  EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK   D +++  PGG+   +I++V 
Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIVTPGGDMLVKIVKVE 157


>gi|257885237|ref|ZP_05664890.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium 1,231,501]
 gi|257821089|gb|EEV48223.1| prokaryotic transcription elongation factor GreA [Enterococcus
           faecium 1,231,501]
          Length = 159

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 103/157 (65%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K+  +T +G +K+++EL   +  +R  II+ I  AR +GDLSEN+EY++AK+ Q   
Sbjct: 1   MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  +EN+I  A++ID   +  D ++ G TV+ +E   GD++ Y IVG  EAD  SG 
Sbjct: 61  EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGDEEEYTIVGSAEADPFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK   D +++  PGG+   +I++V 
Sbjct: 121 ISNDSPIAQALIGKRKNDEVTIATPGGDMLVKIVKVE 157


>gi|227888966|ref|ZP_04006771.1| transcription elongation factor GreA [Lactobacillus johnsonii ATCC
           33200]
 gi|268318753|ref|YP_003292409.1| Transcription elongation factor greA [Lactobacillus johnsonii
           FI9785]
 gi|227850554|gb|EEJ60640.1| transcription elongation factor GreA [Lactobacillus johnsonii ATCC
           33200]
 gi|262397128|emb|CAX66142.1| Transcription elongation factor greA [Lactobacillus johnsonii
           FI9785]
          Length = 153

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 3/149 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   ++ +RPR IK + EAR+ GDLSEN+EY  AK      + R+  L
Sbjct: 7   MTPEGYQEIKDEIARLKK-DRPRRIKILQEARSMGDLSENSEYTTAKMELGHLQSRLRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  +  +E+I         I  G+ V+L+     + + Y+IVG  EAD+  G +S  SP+
Sbjct: 66  DKQLRYSEII--QKDESGTIDLGSNVTLLFDGDDEAEKYRIVGRMEADLAKGKISFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
            +AL+ K+ G  ++V AP G    +I+ V
Sbjct: 124 GQALMKKKAGATVTVEAPAGSYDVKIIAV 152


>gi|239637583|ref|ZP_04678555.1| transcription elongation factor GreA [Staphylococcus warneri
           L37603]
 gi|239596801|gb|EEQ79326.1| transcription elongation factor GreA [Staphylococcus warneri
           L37603]
 gi|330685471|gb|EGG97125.1| transcription elongation factor GreA [Staphylococcus epidermidis
           VCU121]
          Length = 158

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 60/155 (38%), Positives = 94/155 (60%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +GF+K++QEL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 5   KQYPMTQEGFEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E++I  A +I+ +  +      G TV+ VE    ++++YQIVG  EAD   G +S 
Sbjct: 65  IQRIEHMIRNALIIEDTGDNNTV-QIGKTVTFVELPGDEEESYQIVGSAEADAFKGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPG-GEKTYEILQVL 156
            SP+A ALIGK L D + V  P  GE   +I+ + 
Sbjct: 124 ESPMASALIGKSLDDEVRVPLPNGGEMNVKIVDIK 158


>gi|284033490|ref|YP_003383421.1| transcription elongation factor GreA [Kribbella flavida DSM 17836]
 gi|283812783|gb|ADB34622.1| transcription elongation factor GreA [Kribbella flavida DSM 17836]
          Length = 169

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 79/155 (50%), Gaps = 6/155 (3%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           + +T  G+D+++ EL   +   R  I + ISEAR  GDL EN  Y AAK+ Q   E R+ 
Sbjct: 10  VWLTQDGYDQLKSELEHLKGPARAEITQRISEARDEGDLKENGGYHAAKDEQGKIEARIR 69

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ----EADVQSGLV 120
           +LE+++ RA V + +      +  G  VS+      D + + +   +    +  V   + 
Sbjct: 70  QLEDMLRRARVGE-TPKDDGVVEPGMKVSITFAGDDDVETFLLGSRELLALDTSVDIDVY 128

Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
           S  SP+  A++GK+ GD  +  AP G+  T EI+ 
Sbjct: 129 SPQSPLGAAIMGKKKGDKATYEAPNGKDVTVEIVA 163


>gi|302519408|ref|ZP_07271750.1| transcription elongation factor greA [Streptomyces sp. SPB78]
 gi|302428303|gb|EFL00119.1| transcription elongation factor greA [Streptomyces sp. SPB78]
          Length = 165

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + ++++++EL +     R  I K I EAR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNRLKEELEYLSGPARTEIAKKIEEAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +     G            + +  D   + +   + A       S  SP
Sbjct: 70  LTQLLQHAKVGEAPADDGIVEPGMVVTIAFDGDEDDTLTFLMASREYASSDIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   + GK++GD      P G+K + +IL 
Sbjct: 130 LGTGVNGKKVGDTAEYELPNGKKASVKILA 159


>gi|320528378|ref|ZP_08029540.1| putative transcription elongation factor GreA [Solobacterium moorei
           F0204]
 gi|320131292|gb|EFW23860.1| putative transcription elongation factor GreA [Solobacterium moorei
           F0204]
          Length = 158

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 88/159 (55%), Gaps = 4/159 (2%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +G  K+Q E        R  + + ++EARA GDLSENA+Y AA++ Q  
Sbjct: 1   MAEENKTYLTEEGLKKLQDEYYNLVHVVREEVKQELAEARAQGDLSENADYDAARDEQAK 60

Query: 59  NEGRMAELENIITRAEVIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
            E R+A LE ++   E+ID         +  G++V+L   ++ ++  Y IVG  E+D  +
Sbjct: 61  VEARIATLEYMLRNYELIDTKKAGKKSAVHIGSSVTLFFNDTKEEVTYNIVGSTESDPLN 120

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           G +S  +P+A+A++  ++GD+  V       T EI+++ 
Sbjct: 121 GRLSNETPLAQAILDHKVGDVCEVRVAN-PYTVEIIKIK 158


>gi|299135877|ref|ZP_07029061.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
 gi|298602001|gb|EFI58155.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
          Length = 156

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/146 (32%), Positives = 89/146 (60%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
             ++++++  + E    +   I +A A GDLSENAEY +AK+ Q     R+ +L+  +  
Sbjct: 6   KALEEQIKALEYELTTELPAEIKKAVALGDLSENAEYHSAKQRQEFVNARLGQLKKRMGE 65

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
             ++++  +  D++ FG+T+ + +    ++  Y++V  +EADV  GL+S +SPI RAL+G
Sbjct: 66  LAMVNLDNIPRDKVGFGSTIVVFDSTKDEEITYKLVTSEEADVTKGLISTTSPIGRALLG 125

Query: 133 KELGDIISVNAPGGEKTYEILQVLWI 158
           KE+GD  +V  P G++  E+L++  I
Sbjct: 126 KEIGDTATVVTPNGKRELEVLKLTTI 151


>gi|114561422|ref|YP_748935.1| transcription elongation factor GreB [Shewanella frigidimarina
           NCIMB 400]
 gi|114332715|gb|ABI70097.1| transcription elongation factor GreB [Shewanella frigidimarina
           NCIMB 400]
          Length = 161

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 87/157 (55%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    +T +G++K++ E  +  +E+RP + K ++ A   GD SENA+Y   K L    + 
Sbjct: 1   MKTKLITLEGYNKLRIEHDYLWKEQRPEVTKIVTWAAGLGDRSENADYTFNKRLLRQIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLV 120
           R+  L  ++   +++  +     ++ FGATV +       K  ++IVG +E  D +   +
Sbjct: 61  RVRYLRKLLPELKIVYYAPEQEGKVFFGATVEIENDAGDIK-TFKIVGPEEIYDERKDYI 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI SP+ARAL+ K++ D   V+ P G+KT+ I ++ +
Sbjct: 120 SIDSPMARALLKKQVDDEAVVSTPQGDKTWYINKISY 156


>gi|86742583|ref|YP_482983.1| GreA/GreB family elongation factor [Frankia sp. CcI3]
 gi|86569445|gb|ABD13254.1| GreA/GreB family elongation factor [Frankia sp. CcI3]
          Length = 160

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 2/156 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +  +T + +D+++ EL +     R  I   I  AR  GDL EN  Y AAKE Q   E
Sbjct: 1   MTQQTWLTQEAYDRLRSELDYLTGPWRTEIATKIEAAREEGDLKENGGYHAAKEEQGKQE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ +L +++  A+V +    +G+    G  V +      + + + I   ++      + 
Sbjct: 61  ARIRQLTDLLRDAQVGEAPAATGEAG-PGTVVEVRFSGERETEKFLIGSREDHSTPIEVF 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
           S +SP+  A+ G + G+ +S   P G     EI+ V
Sbjct: 120 SPASPLGGAVSGHKAGETVSYTLPNGRSAKVEIVSV 155


>gi|269837141|ref|YP_003319369.1| GreA/GreB family elongation factor [Sphaerobacter thermophilus DSM
           20745]
 gi|269786404|gb|ACZ38547.1| GreA/GreB family elongation factor [Sphaerobacter thermophilus DSM
           20745]
          Length = 156

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 86/158 (54%), Gaps = 4/158 (2%)

Query: 1   MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  + P  +T++G   +++EL   +  + P +   I E    GD+S+N+EY+  KE    
Sbjct: 1   MASERPVTLTAEGKADLERELHHLRTVKLPDVTARIQELSMDGDVSDNSEYEDTKEELIQ 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ E+EN++ R  VI     S   +  G+ V++V++    +  + +V  +EA+   G
Sbjct: 61  LEARIREIENLLRRVRVIAP-GKSDGVVKLGSRVTIVDETGQAE-TWILVSPEEANTLQG 118

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+  AL+ K +GD + V APGGE ++ I +V 
Sbjct: 119 KISTESPVGAALLDKRVGDSVVVRAPGGETSFTIEKVE 156


>gi|161506805|ref|YP_001576759.1| transcription elongation factor GreA [Lactobacillus helveticus DPC
           4571]
 gi|260102224|ref|ZP_05752461.1| transcription elongation factor GreA 1 [Lactobacillus helveticus
           DSM 20075]
 gi|160347794|gb|ABX26468.1| transcription elongation factor [Lactobacillus helveticus DPC 4571]
 gi|260083965|gb|EEW68085.1| transcription elongation factor GreA 1 [Lactobacillus helveticus
           DSM 20075]
          Length = 153

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   ++ +RPR IK +  ARA GDLSEN EY  AK      + R+  L
Sbjct: 7   MTPEGYKQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AE+  + T    ++  G TV L   +  + + Y+IVG  EAD+  G +S  SP+
Sbjct: 66  GKQLKYAEI--VKTTDDGKVDCGKTVVLKFDDDDETEEYKIVGRMEADLADGKISCDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A++ +E G + +V AP GE    I++V 
Sbjct: 124 GQAIMKQEAGGVATVEAPAGEYKVTIVEVK 153


>gi|261879064|ref|ZP_06005491.1| transcription elongation factor GreA [Prevotella bergensis DSM
           17361]
 gi|270334344|gb|EFA45130.1| transcription elongation factor GreA [Prevotella bergensis DSM
           17361]
          Length = 155

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 89/150 (59%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +G+DK+  +L   +  ERP+   AI+EA   GDLSEN+EY+AAKE Q   E ++ E
Sbjct: 3   YMSKEGYDKLVAQLHQLEAIERPKASAAIAEAADKGDLSENSEYEAAKEAQVHLENKINE 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           ++  I +A+++D+S +S D +   + V +    +  K  Y IV + EA+++   +SI +P
Sbjct: 63  MKMTIAQAKIVDMSRLSADEVQIMSKVEMTNLATKKKMTYTIVSESEANLKENKISIHTP 122

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA+ L+ K++G+ + +  P G     I  +
Sbjct: 123 IAQGLLNKKVGEEVEIKVPRGTLKLRIDNI 152


>gi|70726310|ref|YP_253224.1| transcription elongation factor GreA [Staphylococcus haemolyticus
           JCSC1435]
 gi|123762316|sp|Q4L6V7|GREA_STAHJ RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|68447034|dbj|BAE04618.1| transcription elongation factor [Staphylococcus haemolyticus
           JCSC1435]
          Length = 158

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 99/155 (63%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +G++++++EL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 5   KQYPMTQEGYEQLEKELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E+++  A +I+ +  + + +  G TV+ +E    ++++YQIVG  EAD  +G +S 
Sbjct: 65  IQRIEHMLRYALIIEDTGDN-NVVQIGKTVTFIELPGDEEESYQIVGSAEADAFNGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
            SP+A+ALIGK L D + V  P GGE   +I+ + 
Sbjct: 124 ESPMAKALIGKSLKDEVRVPLPNGGEINVKIVNIK 158


>gi|171780266|ref|ZP_02921170.1| hypothetical protein STRINF_02054 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171281614|gb|EDT47049.1| hypothetical protein STRINF_02054 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 160

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    ++++QEL   +   RP +++ I  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 1   MAEKTYPMTLAEKEQLEQELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG++  +E  I  AE+ID   ++ D +A G TV++ E  + DK  Y IVG   AD+ SG 
Sbjct: 61  EGQIQNIETKIRYAEIIDSDAVAKDEVAIGKTVTVQEVGTTDKDVYHIVGAAGADIFSGR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK+ GDI+++ +P G    EI+ V 
Sbjct: 121 ISNESPIAQALIGKKTGDIVTIESPAGSYDVEIISVE 157


>gi|288917982|ref|ZP_06412341.1| transcription elongation factor GreA [Frankia sp. EUN1f]
 gi|288350637|gb|EFC84855.1| transcription elongation factor GreA [Frankia sp. EUN1f]
          Length = 161

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 1/156 (0%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +  +T + +D+++ EL +     R  I   I  AR  GDL EN  Y AAKE Q   E
Sbjct: 1   MTQQTWLTQEAYDRLRSELEYLTGTWRTEIATKIEAAREEGDLRENGGYHAAKEEQGKQE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ +L +++  A V + +         G  V +      + + + I   ++      + 
Sbjct: 61  ARIRQLMDLLRDARVGETAPAVSGEAGPGMIVEIRFPGEKETEKFLIGSREDHSTSIEVF 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
           S +SP+  A+ G + G+ ++   P G     EI+ V
Sbjct: 121 SPASPLGGAVTGHKAGETVNYTLPNGRSAAVEIVAV 156


>gi|167756790|ref|ZP_02428917.1| hypothetical protein CLORAM_02339 [Clostridium ramosum DSM 1402]
 gi|237734508|ref|ZP_04564989.1| transcription elongation factor greA [Mollicutes bacterium D7]
 gi|167702965|gb|EDS17544.1| hypothetical protein CLORAM_02339 [Clostridium ramosum DSM 1402]
 gi|229382328|gb|EEO32419.1| transcription elongation factor greA [Coprobacillus sp. D7]
          Length = 161

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 93/157 (59%), Gaps = 3/157 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K+ +T  G +K++QE       ERP++I+ +  AR+ GDLSENA+Y AA+E Q   E R
Sbjct: 4   EKVLLTQSGVEKLEQERDNLINVERPKVIEELQLARSQGDLSENADYDAAREKQAHLESR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVE--KNSGDKKNYQIVGDQEADVQSGLV 120
           + E++ ++  AEVI    M    +  G TV++++  +   + ++YQIVG  E D  +G +
Sbjct: 64  IKEIDYMLQNAEVISEEQMDLKVVKPGTTVTILDLSEKDAEPESYQIVGYTETDPLNGKI 123

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S  SP+A+A++G  + +I++V         +I+ + +
Sbjct: 124 SNESPLAKAVLGHGVNEIVTVGVAD-PYDVKIVNIEF 159


>gi|22537752|ref|NP_688603.1| transcription elongation factor GreA [Streptococcus agalactiae
           2603V/R]
 gi|25011701|ref|NP_736096.1| transcription elongation factor GreA [Streptococcus agalactiae
           NEM316]
 gi|76787850|ref|YP_330230.1| transcription elongation factor GreA [Streptococcus agalactiae
           A909]
 gi|76798458|ref|ZP_00780696.1| Transcription elongation factor greA (Transcript cleavage
           factorgreA) [Streptococcus agalactiae 18RS21]
 gi|77405807|ref|ZP_00782891.1| transcription elongation factor GreA [Streptococcus agalactiae
           H36B]
 gi|77408492|ref|ZP_00785230.1| transcription elongation factor GreA [Streptococcus agalactiae
           COH1]
 gi|77411916|ref|ZP_00788247.1| transcription elongation factor GreA [Streptococcus agalactiae
           CJB111]
 gi|77414235|ref|ZP_00790397.1| transcription elongation factor GreA [Streptococcus agalactiae 515]
 gi|81456125|sp|Q8E3U5|GREA_STRA3 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|81744339|sp|Q8DY80|GREA_STRA5 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|123601405|sp|Q3JZS3|GREA_STRA1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|22534643|gb|AAN00476.1|AE014265_5 transcription elongation factor GreA [Streptococcus agalactiae
           2603V/R]
 gi|24413241|emb|CAD47320.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562907|gb|ABA45491.1| transcription elongation factor GreA [Streptococcus agalactiae
           A909]
 gi|76586192|gb|EAO62712.1| Transcription elongation factor greA (Transcript cleavage
           factorgreA) [Streptococcus agalactiae 18RS21]
 gi|77159724|gb|EAO70873.1| transcription elongation factor GreA [Streptococcus agalactiae 515]
 gi|77162013|gb|EAO72993.1| transcription elongation factor GreA [Streptococcus agalactiae
           CJB111]
 gi|77172934|gb|EAO76065.1| transcription elongation factor GreA [Streptococcus agalactiae
           COH1]
 gi|77175594|gb|EAO78379.1| transcription elongation factor GreA [Streptococcus agalactiae
           H36B]
 gi|319745513|gb|EFV97815.1| transcription elongation factor GreA [Streptococcus agalactiae ATCC
           13813]
          Length = 160

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    D++++EL   +   RP +++ I  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 1   MAEKTYPMTQVEKDQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG++  LE  I  AE+ID   ++ D +A G TV + E  + DK  Y IVG   AD+ SG 
Sbjct: 61  EGQIQILETKIRYAEIIDSDAVAKDEVAIGKTVLVQEVGTNDKDTYHIVGAAGADIFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA ALIGK+ GD+ ++ +P G    EI+ V 
Sbjct: 121 ISNESPIAHALIGKKTGDLATIESPAGSYQVEIISVE 157


>gi|320547393|ref|ZP_08041681.1| transcription elongation factor GreA [Streptococcus equinus ATCC
           9812]
 gi|320447938|gb|EFW88693.1| transcription elongation factor GreA [Streptococcus equinus ATCC
           9812]
          Length = 178

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 100/157 (63%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    ++++QEL   +   RP +++ I  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 19  MAEKTYPMTLAEKEQLEQELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 78

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG++  +E  I  AE+ID   ++ D +A G TV++ E ++ DK  Y IVG   AD+ +G 
Sbjct: 79  EGQIQIIETKIRYAEIIDSDAVAKDEVAIGKTVTVQEVSTTDKDVYHIVGAAGADIFAGR 138

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK+ GDI+++ +P G    EI+ V 
Sbjct: 139 ISNESPIAQALIGKKTGDIVTIESPAGNYDVEIISVE 175


>gi|219856286|ref|YP_002473408.1| hypothetical protein CKR_2943 [Clostridium kluyveri NBRC 12016]
 gi|219570010|dbj|BAH07994.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 157

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 86/153 (56%), Gaps = 1/153 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  + +T  G  K+++EL + +  +R  I  A+  ARA GDLSENA+Y AAKE Q++ E 
Sbjct: 4   MQDVILTEAGKKKLEEELEYLKTVKRVEIKAALKAARAQGDLSENADYSAAKEDQSMTET 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE  +  A +I+ S++  D      T  +   +  + +   +V   E+DV++  +S
Sbjct: 64  RIQELEYQLKNAVIIE-SSLETDVFDINRTALVKFYDVDEVEEVTLVSSVESDVKNMRIS 122

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           I SP+ +AL   ++GD  +V +P G    E+ +
Sbjct: 123 IESPLGKALFRLKVGDKATVISPDGNYDVEVEK 155


>gi|296271052|ref|YP_003653684.1| transcription elongation factor GreA [Thermobispora bispora DSM
           43833]
 gi|296093839|gb|ADG89791.1| transcription elongation factor GreA [Thermobispora bispora DSM
           43833]
          Length = 167

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 81/159 (50%), Gaps = 4/159 (2%)

Query: 3   DKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           DK+  +T + +D+++ E  +     R  I K I  AR  GDL EN  Y AAK+ Q   E 
Sbjct: 7   DKVTWLTQEAYDRLKAEYEYLTGPARAEIAKKIEAAREEGDLRENGGYHAAKDEQGKLEA 66

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L  I+  A+V       G     G TV++      ++  + +   +E+ V   + S
Sbjct: 67  RIYRLREILENAKVGQPPADDGIVE-PGMTVTVRFDGEDEEVTFLLASREESGVPIDVYS 125

Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQ-VLWI 158
            +SP+ +A+ GK++G+  +   P G+ ++ EIL+ V ++
Sbjct: 126 PNSPLGKAITGKKVGERATFTLPNGKQRSVEILEAVPYV 164


>gi|168209613|ref|ZP_02635238.1| transcription elongation factor GreA [Clostridium perfringens B
           str. ATCC 3626]
 gi|170712210|gb|EDT24392.1| transcription elongation factor GreA [Clostridium perfringens B
           str. ATCC 3626]
          Length = 154

 Score =  112 bits (280), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 81/151 (53%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T +   K+++EL +R    R +I K   EA A+GD SENAEY+ A      N+ R+ 
Sbjct: 3   NYLTEENVRKLREELDYRMSVVRAKIAKEKLEAAAHGDRSENAEYKEACRNYRENDNRIQ 62

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L  +I+ A ++D  +     +   +   +      D+    +V   + D+++  +SI S
Sbjct: 63  YLLTMISTAIIVDEESNDKSTLGLNSKARIKFVEDDDEDVVTLVTTMDLDLENMCISIES 122

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
            + +AL+GK +GD++ V APGG  T E+L++
Sbjct: 123 DLGKALMGKNVGDVVEVEAPGGNYTVEVLEI 153


>gi|206895281|ref|YP_002247422.1| transcription elongation factor GreA [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206737898|gb|ACI16976.1| transcription elongation factor GreA [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 163

 Score =  112 bits (280), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 99/155 (63%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           ++  +T +G+ KI +EL++ ++ +R  + + I EARA GDLSEN+E++AAKE Q L E R
Sbjct: 6   EEAILTEEGYKKILEELKYLKEVKRKEVAEKIQEARALGDLSENSEFEAAKEEQALLEER 65

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV-GDQEADVQSGLVS 121
           +A LE ++  A V+    ++ D+++ G  V ++++++G ++++ IV   +E D  SG +S
Sbjct: 66  IARLETLVYNARVVKAEDLALDQVSVGTKVLVLDESAGREESFIIVGNSEEVDPFSGKIS 125

Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
             SP+   L+G++ GD + +    G K  YEIL +
Sbjct: 126 SKSPLGSRLLGRKRGDRVEIKLRNGSKAVYEILDI 160


>gi|227529977|ref|ZP_03960026.1| transcription elongation factor GreA [Lactobacillus vaginalis ATCC
           49540]
 gi|227350100|gb|EEJ40391.1| transcription elongation factor GreA [Lactobacillus vaginalis ATCC
           49540]
          Length = 172

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 56/150 (37%), Positives = 81/150 (54%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G+ +I+QE+   Q  +RP  I  +  ARA GDLSEN EY  AK      E R+  L
Sbjct: 18  MTPTGYHEIEQEIEKLQA-QRPAKIAQLKAARALGDLSENTEYSTAKRELRHLESRLRYL 76

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AE+I  +      I  G TV+L   +  ++ NY IVG QEAD+Q   +S  SP+
Sbjct: 77  NKQLQYAEIIKPTDS--QTIDLGTTVTLQFIDDDEQVNYTIVGKQEADLQKQKISFDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +AL+ +++G  +SV AP      +IL V 
Sbjct: 135 GQALLHQKVGQTVSVQAPQSTYQVKILAVR 164


>gi|295106038|emb|CBL03581.1| transcription elongation factor GreA [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 156

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 4/156 (2%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D   +T +G DK+++EL + + E+R  I + I  AR +GD+SEN+EY  AK  Q + E R
Sbjct: 4   DNFILTQEGKDKLEEELHYLETEKRAEIGERIKVAREFGDISENSEYDDAKNEQGMMEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +AE+  I++ A V++ +     ++  G+ V++     G ++ + IVG  E+D  +G +S 
Sbjct: 64  IAEISRILSEATVVN-TPKRSSKVNIGSMVTV--DMGGKERVFTIVGGAESDAAAGKISN 120

Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
            SP+  AL+G + GD +    P G + +  IL++  
Sbjct: 121 ESPVGAALLGHKKGDKVETTGPTGRDISMVILKIEH 156


>gi|50842047|ref|YP_055274.1| transcription elongation factor GreA [Propionibacterium acnes
           KPA171202]
 gi|289425793|ref|ZP_06427547.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Propionibacterium acnes SK187]
 gi|289426784|ref|ZP_06428512.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Propionibacterium acnes J165]
 gi|295130130|ref|YP_003580793.1| transcription elongation factor GreA [Propionibacterium acnes
           SK137]
 gi|50839649|gb|AAT82316.1| transcription elongation factor GreA [Propionibacterium acnes
           KPA171202]
 gi|289153736|gb|EFD02443.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Propionibacterium acnes SK187]
 gi|289160110|gb|EFD08286.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Propionibacterium acnes J165]
 gi|291375127|gb|ADD98981.1| transcription elongation factor GreA [Propionibacterium acnes
           SK137]
 gi|313764010|gb|EFS35374.1| transcription elongation factor GreA [Propionibacterium acnes
           HL013PA1]
 gi|313771459|gb|EFS37425.1| transcription elongation factor GreA [Propionibacterium acnes
           HL074PA1]
 gi|313791667|gb|EFS39785.1| transcription elongation factor GreA [Propionibacterium acnes
           HL110PA1]
 gi|313802247|gb|EFS43473.1| transcription elongation factor GreA [Propionibacterium acnes
           HL110PA2]
 gi|313808119|gb|EFS46593.1| transcription elongation factor GreA [Propionibacterium acnes
           HL087PA2]
 gi|313811414|gb|EFS49128.1| transcription elongation factor GreA [Propionibacterium acnes
           HL083PA1]
 gi|313812597|gb|EFS50311.1| transcription elongation factor GreA [Propionibacterium acnes
           HL025PA1]
 gi|313814863|gb|EFS52577.1| transcription elongation factor GreA [Propionibacterium acnes
           HL059PA1]
 gi|313818886|gb|EFS56600.1| transcription elongation factor GreA [Propionibacterium acnes
           HL046PA2]
 gi|313820713|gb|EFS58427.1| transcription elongation factor GreA [Propionibacterium acnes
           HL036PA1]
 gi|313822520|gb|EFS60234.1| transcription elongation factor GreA [Propionibacterium acnes
           HL036PA2]
 gi|313825684|gb|EFS63398.1| transcription elongation factor GreA [Propionibacterium acnes
           HL063PA1]
 gi|313828026|gb|EFS65740.1| transcription elongation factor GreA [Propionibacterium acnes
           HL063PA2]
 gi|313830831|gb|EFS68545.1| transcription elongation factor GreA [Propionibacterium acnes
           HL007PA1]
 gi|313833259|gb|EFS70973.1| transcription elongation factor GreA [Propionibacterium acnes
           HL056PA1]
 gi|313839015|gb|EFS76729.1| transcription elongation factor GreA [Propionibacterium acnes
           HL086PA1]
 gi|314915042|gb|EFS78873.1| transcription elongation factor GreA [Propionibacterium acnes
           HL005PA4]
 gi|314918627|gb|EFS82458.1| transcription elongation factor GreA [Propionibacterium acnes
           HL050PA1]
 gi|314920435|gb|EFS84266.1| transcription elongation factor GreA [Propionibacterium acnes
           HL050PA3]
 gi|314925628|gb|EFS89459.1| transcription elongation factor GreA [Propionibacterium acnes
           HL036PA3]
 gi|314932109|gb|EFS95940.1| transcription elongation factor GreA [Propionibacterium acnes
           HL067PA1]
 gi|314954625|gb|EFS99031.1| transcription elongation factor GreA [Propionibacterium acnes
           HL027PA1]
 gi|314958576|gb|EFT02678.1| transcription elongation factor GreA [Propionibacterium acnes
           HL002PA1]
 gi|314959820|gb|EFT03922.1| transcription elongation factor GreA [Propionibacterium acnes
           HL002PA2]
 gi|314962393|gb|EFT06494.1| transcription elongation factor GreA [Propionibacterium acnes
           HL082PA1]
 gi|314968336|gb|EFT12435.1| transcription elongation factor GreA [Propionibacterium acnes
           HL037PA1]
 gi|314973719|gb|EFT17815.1| transcription elongation factor GreA [Propionibacterium acnes
           HL053PA1]
 gi|314976366|gb|EFT20461.1| transcription elongation factor GreA [Propionibacterium acnes
           HL045PA1]
 gi|314979203|gb|EFT23297.1| transcription elongation factor GreA [Propionibacterium acnes
           HL072PA2]
 gi|314983351|gb|EFT27443.1| transcription elongation factor GreA [Propionibacterium acnes
           HL005PA1]
 gi|314986758|gb|EFT30850.1| transcription elongation factor GreA [Propionibacterium acnes
           HL005PA2]
 gi|314989499|gb|EFT33590.1| transcription elongation factor GreA [Propionibacterium acnes
           HL005PA3]
 gi|315077480|gb|EFT49540.1| transcription elongation factor GreA [Propionibacterium acnes
           HL053PA2]
 gi|315080223|gb|EFT52199.1| transcription elongation factor GreA [Propionibacterium acnes
           HL078PA1]
 gi|315084105|gb|EFT56081.1| transcription elongation factor GreA [Propionibacterium acnes
           HL027PA2]
 gi|315085307|gb|EFT57283.1| transcription elongation factor GreA [Propionibacterium acnes
           HL002PA3]
 gi|315089078|gb|EFT61054.1| transcription elongation factor GreA [Propionibacterium acnes
           HL072PA1]
 gi|315096494|gb|EFT68470.1| transcription elongation factor GreA [Propionibacterium acnes
           HL038PA1]
 gi|315098901|gb|EFT70877.1| transcription elongation factor GreA [Propionibacterium acnes
           HL059PA2]
 gi|315100859|gb|EFT72835.1| transcription elongation factor GreA [Propionibacterium acnes
           HL046PA1]
 gi|315107203|gb|EFT79179.1| transcription elongation factor GreA [Propionibacterium acnes
           HL030PA1]
 gi|315108077|gb|EFT80053.1| transcription elongation factor GreA [Propionibacterium acnes
           HL030PA2]
 gi|327326744|gb|EGE68527.1| transcription elongation factor GreA [Propionibacterium acnes
           HL096PA2]
 gi|327330559|gb|EGE72306.1| transcription elongation factor GreA [Propionibacterium acnes
           HL096PA3]
 gi|327331070|gb|EGE72810.1| transcription elongation factor GreA [Propionibacterium acnes
           HL097PA1]
 gi|327443055|gb|EGE89709.1| transcription elongation factor GreA [Propionibacterium acnes
           HL043PA1]
 gi|327445178|gb|EGE91832.1| transcription elongation factor GreA [Propionibacterium acnes
           HL043PA2]
 gi|327446896|gb|EGE93550.1| transcription elongation factor GreA [Propionibacterium acnes
           HL013PA2]
 gi|327450159|gb|EGE96813.1| transcription elongation factor GreA [Propionibacterium acnes
           HL087PA3]
 gi|327455114|gb|EGF01769.1| transcription elongation factor GreA [Propionibacterium acnes
           HL092PA1]
 gi|327455284|gb|EGF01939.1| transcription elongation factor GreA [Propionibacterium acnes
           HL083PA2]
 gi|328752572|gb|EGF66188.1| transcription elongation factor GreA [Propionibacterium acnes
           HL020PA1]
 gi|328752825|gb|EGF66441.1| transcription elongation factor GreA [Propionibacterium acnes
           HL087PA1]
 gi|328759252|gb|EGF72868.1| transcription elongation factor GreA [Propionibacterium acnes
           HL025PA2]
 gi|328760261|gb|EGF73834.1| transcription elongation factor GreA [Propionibacterium acnes
           HL099PA1]
 gi|332674970|gb|AEE71786.1| transcription elongation factor GreA [Propionibacterium acnes 266]
          Length = 168

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 5/159 (3%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D + +T + FDK+ QEL + + E R  I   I++AR+ GDLSEN  Y AA+E Q   E R
Sbjct: 6   DTVWLTQEAFDKLTQELEYLKGEGRTAIANKIADARSEGDLSENGGYHAAREEQGQAEAR 65

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY----QIVGDQEADVQSG 118
           + +LE ++  AEV +  +   + +           +  D   +    + V   +  V   
Sbjct: 66  IRQLEQMLRNAEVGEAPSSPDEVVPGSKVTVCYFDDESDTDTFLLGSRQVMGLDDSVNVS 125

Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           + S  SP+  A++G   G+     AP G      IL V 
Sbjct: 126 VYSPQSPLGGAILGHSKGESTEYQAPNGKTIKVTILNVE 164


>gi|27468211|ref|NP_764848.1| transcription elongation factor [Staphylococcus epidermidis ATCC
           12228]
 gi|57867085|ref|YP_188750.1| transcription elongation factor GreA [Staphylococcus epidermidis
           RP62A]
 gi|282875965|ref|ZP_06284832.1| transcription elongation factor GreA [Staphylococcus epidermidis
           SK135]
 gi|32129576|sp|Q8CSB3|GREA_STAES RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|71152091|sp|Q5HNU0|GREA_STAEQ RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|27315757|gb|AAO04892.1|AE016748_126 transcription elongation factor [Staphylococcus epidermidis ATCC
           12228]
 gi|57637743|gb|AAW54531.1| transcription elongation factor GreA [Staphylococcus epidermidis
           RP62A]
 gi|281294990|gb|EFA87517.1| transcription elongation factor GreA [Staphylococcus epidermidis
           SK135]
 gi|329724691|gb|EGG61197.1| transcription elongation factor GreA [Staphylococcus epidermidis
           VCU144]
 gi|329735364|gb|EGG71656.1| transcription elongation factor GreA [Staphylococcus epidermidis
           VCU045]
 gi|329737227|gb|EGG73481.1| transcription elongation factor GreA [Staphylococcus epidermidis
           VCU028]
          Length = 158

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 96/155 (61%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +G++K++QEL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 5   KQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E++I  A +I+      + +  G TV+ +E    ++++YQIVG  EAD   G +S 
Sbjct: 65  IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPG-GEKTYEILQVL 156
            SP+A+ALIGK L D + V  P  GE   +I+++ 
Sbjct: 124 ESPMAKALIGKGLNDQVRVPLPNGGEMNVKIVEIK 158


>gi|251811021|ref|ZP_04825494.1| elongation factor GreA [Staphylococcus epidermidis BCM-HMP0060]
 gi|293366432|ref|ZP_06613110.1| transcription elongation factor GreA [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|251805439|gb|EES58096.1| elongation factor GreA [Staphylococcus epidermidis BCM-HMP0060]
 gi|291319466|gb|EFE59834.1| transcription elongation factor GreA [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 161

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 96/155 (61%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +G++K++QEL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 8   KQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 67

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E++I  A +I+      + +  G TV+ +E    ++++YQIVG  EAD   G +S 
Sbjct: 68  IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISN 126

Query: 123 SSPIARALIGKELGDIISVNAPG-GEKTYEILQVL 156
            SP+A+ALIGK L D + V  P  GE   +I+++ 
Sbjct: 127 ESPMAKALIGKGLNDQVRVPLPNGGEMNVKIVEIK 161


>gi|288906006|ref|YP_003431228.1| transcription elongation factor [Streptococcus gallolyticus UCN34]
 gi|306832025|ref|ZP_07465180.1| transcription elongation factor GreA [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|306834163|ref|ZP_07467283.1| transcription elongation factor GreA [Streptococcus bovis ATCC
           700338]
 gi|325978973|ref|YP_004288689.1| transcription elongation factor greA [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
 gi|288732732|emb|CBI14306.1| transcription elongation factor [Streptococcus gallolyticus UCN34]
 gi|304423736|gb|EFM26882.1| transcription elongation factor GreA [Streptococcus bovis ATCC
           700338]
 gi|304425951|gb|EFM29068.1| transcription elongation factor GreA [Streptococcus gallolyticus
           subsp. gallolyticus TX20005]
 gi|325178901|emb|CBZ48945.1| Transcription elongation factor greA [Streptococcus gallolyticus
           subsp. gallolyticus ATCC BAA-2069]
          Length = 160

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 67/157 (42%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    ++++QEL   +   RP +++ I  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 1   MAEKTYPMTLAEKEQLEQELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG++  LE  I  AE+ID   ++ D +A G TV++ E  + DK  Y IVG   AD+ SG 
Sbjct: 61  EGQIQILETKIRYAEIIDSDAVAKDEVAIGKTVTVEEVGTTDKDVYHIVGAAGADIFSGR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK+ GDI+++ +P G    +I+ V 
Sbjct: 121 ISNESPIAQALIGKKTGDIVTIESPAGSYDVKIVSVE 157


>gi|313678570|ref|YP_004056310.1| transcription elongation factor GreA [Mycoplasma bovis PG45]
 gi|312950163|gb|ADR24758.1| transcription elongation factor GreA [Mycoplasma bovis PG45]
          Length = 163

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KI ++ + ++K + E       ERP +  ++ EARA GDLSENAEY AA++ Q+  E R
Sbjct: 7   EKIYLSEETYNKYKNEYTELVTVERPAVQASLKEARAQGDLSENAEYDAARDRQSEVERR 66

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELE I+  AE+ID  +   ++   GATV  +   +  +    I+G  +++     +S 
Sbjct: 67  ILELERILENAEIIDTKSAVQNKAGIGATVKYLNMKTNKELVVTIMGPHDSNPIENKISN 126

Query: 123 SSPIARALIGKE-LGDIISVNAPGGEKTYEILQVLW 157
            SP+A+A++    +GD++ V  P  +   ++L + +
Sbjct: 127 ESPVAQAIMEANGIGDVVEVEVPQ-KYNIKVLDISY 161


>gi|160915319|ref|ZP_02077532.1| hypothetical protein EUBDOL_01328 [Eubacterium dolichum DSM 3991]
 gi|158433118|gb|EDP11407.1| hypothetical protein EUBDOL_01328 [Eubacterium dolichum DSM 3991]
          Length = 159

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 91/155 (58%), Gaps = 1/155 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K  VT +G D++ +E        R  +I  + EARA GDLSENA+Y AA+E Q   E R
Sbjct: 5   EKFLVTKEGLDELVKEHDHLIHVVRDEVIIELQEARAQGDLSENADYDAAREHQAQVEAR 64

Query: 63  MAELENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           + +LE +I +AE+I+    +  + +  G+TV++++ +S +++ Y IVG  EAD  +G +S
Sbjct: 65  IRDLEAMIAKAEIIEGDKKTKKKAVTLGSTVTILDMDSNEEETYTIVGSIEADPLNGKLS 124

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             +P+A AL+  +  DI+ V+        +IL + 
Sbjct: 125 NITPLAVALMDHKTNDIVEVSGAETPYEVKILSIK 159


>gi|153955944|ref|YP_001396709.1| GreA2 [Clostridium kluyveri DSM 555]
 gi|146348802|gb|EDK35338.1| GreA2 [Clostridium kluyveri DSM 555]
          Length = 154

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/153 (32%), Positives = 86/153 (56%), Gaps = 1/153 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  + +T  G  K+++EL + +  +R  I  A+  ARA GDLSENA+Y AAKE Q++ E 
Sbjct: 1   MQDVILTEAGKKKLEEELEYLKTVKRVEIKAALKAARAQGDLSENADYSAAKEDQSMTET 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE  +  A +I+ S++  D      T  +   +  + +   +V   E+DV++  +S
Sbjct: 61  RIQELEYQLKNAVIIE-SSLETDVFDINRTALVKFYDVDEVEEVTLVSSVESDVKNMRIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           I SP+ +AL   ++GD  +V +P G    E+ +
Sbjct: 120 IESPLGKALFRLKVGDKATVISPDGNYDVEVEK 152


>gi|13508140|ref|NP_110089.1| transcription elongation factor GreA [Mycoplasma pneumoniae M129]
 gi|2494921|sp|P78019|GREA_MYCPN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|1674124|gb|AAB96085.1| transcription elongation factor [Mycoplasma pneumoniae M129]
          Length = 160

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 88/154 (57%), Gaps = 1/154 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K  +T +G  +++ EL    Q +RP IIK + EAR  GDLSENA+Y AAK  Q   E R
Sbjct: 4   NKNYLTEEGLKQLEAELEHLIQVKRPAIIKLLQEARDQGDLSENADYDAAKAQQGEIETR 63

Query: 63  MAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           +AE+++I+   ++I+ S     +++  G+TV + + +S   + Y IVG  EA+ +   +S
Sbjct: 64  IAEIQDILANVKLINESQTKKANKVTLGSTVEIYDYSSKTHEKYTIVGALEANPEEHRIS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+A A+ G+ + D   V         +I+++
Sbjct: 124 NESPLAHAIYGRLVDDECDVVGIEVPYRVKIVKI 157


>gi|301633495|gb|ADK87049.1| transcription elongation factor GreA [Mycoplasma pneumoniae FH]
          Length = 160

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 88/154 (57%), Gaps = 1/154 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K  +T +G  +++ EL    Q +RP IIK + EAR  GDLSENA+Y AAK  Q   E R
Sbjct: 4   NKNYLTEEGLKQLEAELEHLIQVKRPAIIKLLQEARDQGDLSENADYDAAKAQQGEIETR 63

Query: 63  MAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           +AE+++I+   ++I+ S     +++  G+TV + + +S   + Y IVG  EA+ +   +S
Sbjct: 64  IAEIQDILANVKLINESQTKKANKVTLGSTVEIYDYSSKTHEKYTIVGALEANPEEHRIS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+A A+ G+ + D   V         +I+++
Sbjct: 124 NESPLAHAIYGRLVDDECDVVGIEVPYRVKIVKI 157


>gi|83814801|ref|YP_445548.1| transcription elongation factor GreA [Salinibacter ruber DSM 13855]
 gi|83756195|gb|ABC44308.1| transcription elongation factor GreA [Salinibacter ruber DSM 13855]
          Length = 164

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 97/153 (63%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           + + +T +G +++++EL   + EER RI   I+EARA GDLSENAEY AAKE Q   E R
Sbjct: 10  ETVYMTEEGLEELKEELHQLKTEERSRIADEIAEARAKGDLSENAEYDAAKEEQGKLEAR 69

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ++E+ I RA ++D ST+   +    + V++   ++GD++ + +V ++EA++    +S+
Sbjct: 70  IKQIEDTIARARIVDESTVDDSKAYILSDVTVENLDTGDEQTFTLVSEEEANISENKISV 129

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SPI   L+ +E GD +S++ P G   ++I  +
Sbjct: 130 DSPIGEGLLAQEEGDEVSIDVPAGTVHFKIKDI 162


>gi|148377651|ref|YP_001256527.1| transcription elongation factor greA [Mycoplasma agalactiae PG2]
 gi|291320341|ref|YP_003515603.1| transcription elongation factor greA [Mycoplasma agalactiae]
 gi|259647749|sp|A5IYH4|GREA_MYCAP RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|148291697|emb|CAL59083.1| Transcription elongation factor greA [Mycoplasma agalactiae PG2]
 gi|290752674|emb|CBH40647.1| Transcription elongation factor greA [Mycoplasma agalactiae]
          Length = 163

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KI ++ + ++K + E       ERP +  ++ EARA GDLSENAEY AA++ Q+  E R
Sbjct: 7   EKIYLSEETYNKYKNEYTELVTVERPAVQASLKEARAQGDLSENAEYDAARDRQSEVERR 66

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELE I+  AE+ID  +   ++   GATV  +   +  +    I+G  +++     +S 
Sbjct: 67  ILELERILENAEIIDTKSAVQNKAGIGATVRYLNMKTNKELVVTIMGPHDSNPIENKISN 126

Query: 123 SSPIARALIGKE-LGDIISVNAPGGEKTYEILQVLW 157
            SP+A+A++    +GD++ V  P  +   ++L + +
Sbjct: 127 ESPVAQAIMEANGIGDVVEVEVPQ-KYNIKVLDISY 161


>gi|224476708|ref|YP_002634314.1| transcription elongation factor GreA [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254799567|sp|B9DNJ3|GREA_STACT RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|222421315|emb|CAL28129.1| putative transcription elongation factor,similar to GreA
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 160

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 61/155 (39%), Positives = 97/155 (62%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +GF+K++QEL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 5   KQYPMTQEGFEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E++I  A +I+ S  + + +  G TV+ +E   G+++ YQIVG  EAD  +G +S 
Sbjct: 65  IQRIEHMIRNALIIEDSGDN-NVVQIGKTVTFIEIPDGEEEVYQIVGSAEADAFNGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
            SPIA++LIGK L D + V  P G E   +I  + 
Sbjct: 124 ESPIAKSLIGKHLDDEVRVPLPNGAEIKVKITNIQ 158


>gi|328463913|gb|EGF35431.1| transcription elongation factor GreA [Lactobacillus helveticus MTCC
           5463]
          Length = 153

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   ++ +RPR IK +  ARA GDLSEN EY  AK      + R+  L
Sbjct: 7   MTPEGYKQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AE+  + T    ++  G TV L   +  + + Y+IVG  EAD+  G +S  SP+
Sbjct: 66  GKQLKYAEI--VKTTDDGKVDCGKTVVLKFDDDDETEEYKIVGRMEADLADGKISCDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A++ +E G + +V AP GE    I++V 
Sbjct: 124 GQAIMKQEAGGVATVEAPAGEHKVTIVEVK 153


>gi|296115084|ref|ZP_06833726.1| putative transcription elongation factor greB [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295978421|gb|EFG85157.1| putative transcription elongation factor greB [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 177

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 76/152 (50%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ KG + ++ EL    ++ERPRI++ +S A   GD SEN +Y   K+     + R+  
Sbjct: 18  YISPKGMEVLRHELNTLLRDERPRIVEIVSWAAGNGDRSENGDYLYGKKRLREIDRRVRF 77

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   I +A ++D +        F            + +   I+G  EAD   G +S+ SP
Sbjct: 78  LTKRIEKAIIVDPAQQPRRGQVFFGATVTYATERDETRVVTIMGVDEADTVRGEISLISP 137

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +ARAL+   +GD + +  P G++  E++ + +
Sbjct: 138 VARALMRARVGDEVRLMTPRGDEMLEVMAISY 169


>gi|311743142|ref|ZP_07716950.1| transcription elongation factor GreA [Aeromicrobium marinum DSM
           15272]
 gi|311313822|gb|EFQ83731.1| transcription elongation factor GreA [Aeromicrobium marinum DSM
           15272]
          Length = 175

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 6/158 (3%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            D I VT + +D+++ EL   + E R  I   I+ AR  GDL EN  Y AA+E Q   E 
Sbjct: 15  TDTIWVTQEAYDRLRSELDHLRGEVRSDITSKIAAARDEGDLKENGGYHAAREEQGKTEA 74

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ----EADVQS 117
           R+ +LE+++ RAEV D     G   A G  V++      D +++ +   +    ++ V  
Sbjct: 75  RIRQLEDMLRRAEVGDKPADDGLVEA-GMKVTIRFAGDDDTESFLLGSRELLSLDSSVDL 133

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
            + S +SP+  A++GK+ GD  +   P G   T E+++
Sbjct: 134 DVYSPTSPLGAAILGKKAGDTATYETPNGRSITVEVVE 171


>gi|94984775|ref|YP_604139.1| transcription elongation factor GreA [Deinococcus geothermalis DSM
           11300]
 gi|94555056|gb|ABF44970.1| transcription elongation factor GreA [Deinococcus geothermalis DSM
           11300]
          Length = 156

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 55/154 (35%), Positives = 94/154 (61%), Gaps = 3/154 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +IP+T +G+DK+++ L + +   R +I + +  A A GDL E+A Y  A+  Q+ NE R+
Sbjct: 5   RIPMTKRGYDKLRETLEYLKTTRREQISEYMGSAIADGDLRESAAYDEARMQQSENEARI 64

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            ELE+ + RA++I+     G     GA V + ++  G+++ +++VG  E DV  G +S +
Sbjct: 65  LELEDQLERAQIIEEDASGG--AGLGAKVKVRDEK-GNERQFELVGTYEVDVLKGKISDA 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPI +AL GK  G I++V  P G   +E+L+V +
Sbjct: 122 SPIGQALSGKRPGQIVTVQLPKGSAKFEVLEVTY 155


>gi|73662460|ref|YP_301241.1| transcription elongation factor GreA [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|123747876|sp|Q49Y48|GREA_STAS1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|72494975|dbj|BAE18296.1| transcription elongation factor [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 158

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 97/155 (62%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +GF+K++ EL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 5   KQYPMTQEGFEKLEHELEELKTVKRPEVVEKIKIARSFGDLSENSEYDAAKDEQGFIEQD 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +EN++  A +I+ +  + +    G TV++VE    +++ YQIVG  E+D   G +S 
Sbjct: 65  IQRVENMLRNALIIEDTGNNNEV-QLGKTVTIVELPGEEEEEYQIVGSAESDAFKGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
            SP+A++LIGK+L D + V  P GGE   +I+ + 
Sbjct: 124 ESPMAKSLIGKKLDDEVRVPLPNGGEINVKIVNIK 158


>gi|319935513|ref|ZP_08009948.1| transcription elongation factor [Coprobacillus sp. 29_1]
 gi|319809544|gb|EFW05961.1| transcription elongation factor [Coprobacillus sp. 29_1]
          Length = 161

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 93/158 (58%), Gaps = 3/158 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D + +T  G +K+++E       ERP++I+ +  AR+ GDLSENA+Y +A++ Q   E R
Sbjct: 4   DAVLLTQSGVEKLKKEREQLINIERPKVIEELQLARSQGDLSENADYDSARDKQAHIESR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG--DKKNYQIVGDQEADVQSGLV 120
           + E++ ++   ++ID S M       GATV++++ +    + +++ IVG  E D  +G +
Sbjct: 64  IKEIDQMLLHVQIIDESQMDSAVAKPGATVTILDLSEEGAEPESFTIVGTFETDPLNGKI 123

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S  SP+A+A++   + +I+SV         +IL++ +I
Sbjct: 124 SNESPLAKAILEHGVNEIVSVGV-AEPYEVKILKIEYI 160


>gi|21223338|ref|NP_629117.1| transcription elongation factor GreA [Streptomyces coelicolor
           A3(2)]
 gi|256785558|ref|ZP_05523989.1| transcription elongation factor GreA [Streptomyces lividans TK24]
 gi|289769454|ref|ZP_06528832.1| transcription elongation factor greA [Streptomyces lividans TK24]
 gi|25453008|sp|Q9ADK2|GREA_STRCO RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|20520966|emb|CAD30950.1| putative transcription elongation factor [Streptomyces coelicolor
           A3(2)]
 gi|289699653|gb|EFD67082.1| transcription elongation factor greA [Streptomyces lividans TK24]
          Length = 165

 Score =  111 bits (278), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + ++K+++EL +     R  I   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNKLKEELEYLTGPARTEISAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +     G            + +  D   + +   + A       S  SP
Sbjct: 70  LTQLLESAKVGEAPAADGVVAPGMVVTIAFDGDEDDTLTFLLASREYASSDIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQ 154
           +   ++G ++GD      P G+  +  IL+
Sbjct: 130 LGSGVLGHKVGDDAQYELPNGKPASVRILK 159


>gi|256844340|ref|ZP_05549826.1| transcription elongation factor GreA [Lactobacillus crispatus
           125-2-CHN]
 gi|262047271|ref|ZP_06020229.1| transcription elongation factor GreA [Lactobacillus crispatus
           MV-3A-US]
 gi|295692071|ref|YP_003600681.1| transcription elongation factor [Lactobacillus crispatus ST1]
 gi|256613418|gb|EEU18621.1| transcription elongation factor GreA [Lactobacillus crispatus
           125-2-CHN]
 gi|260572516|gb|EEX29078.1| transcription elongation factor GreA [Lactobacillus crispatus
           MV-3A-US]
 gi|295030177|emb|CBL49656.1| Transcription elongation factor [Lactobacillus crispatus ST1]
          Length = 153

 Score =  111 bits (278), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   ++ +RPR IK +  ARA GDLSEN EY  AK      + R+  L
Sbjct: 7   MTPEGYQQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AE++        ++  G TV L   +  + + Y++VG  EAD+ +G VS  SP+
Sbjct: 66  GKQLKYAEIVKAEDD--GKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A++ KE G   +V AP GE    I++V 
Sbjct: 124 GQAIMKKEAGTTATVAAPAGEYQVTIVEVK 153


>gi|148378676|ref|YP_001253217.1| transcription elongation factor GreA [Clostridium botulinum A str.
           ATCC 3502]
 gi|153933080|ref|YP_001383060.1| transcription elongation factor GreA [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936284|ref|YP_001386609.1| transcription elongation factor GreA [Clostridium botulinum A str.
           Hall]
 gi|187777798|ref|ZP_02994271.1| hypothetical protein CLOSPO_01390 [Clostridium sporogenes ATCC
           15579]
 gi|148288160|emb|CAL82228.1| transcription elongation factor [Clostridium botulinum A str. ATCC
           3502]
 gi|152929124|gb|ABS34624.1| transcription elongation factor GreA [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932198|gb|ABS37697.1| transcription elongation factor GreA [Clostridium botulinum A str.
           Hall]
 gi|187774726|gb|EDU38528.1| hypothetical protein CLOSPO_01390 [Clostridium sporogenes ATCC
           15579]
          Length = 154

 Score =  111 bits (278), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/152 (32%), Positives = 85/152 (55%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +  +K+++EL +R  ++R  I K   EA A+GD SENAEY+ A      N+ R+
Sbjct: 2   KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L  +I+ A VID    +   +   +   +       + N  +V   +AD +  L+S+ 
Sbjct: 62  QYLLTMISTASVIDEKNQNKSVLGVNSKCKIKFIEDEFETNVSLVTTMDADPEKMLISVE 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S + +AL+GK++GD+  V+APG + T E+L++
Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVLEI 153


>gi|148544438|ref|YP_001271808.1| transcription elongation factor GreA [Lactobacillus reuteri DSM
           20016]
 gi|184153802|ref|YP_001842143.1| transcription elongation factor GreA [Lactobacillus reuteri JCM
           1112]
 gi|194466620|ref|ZP_03072607.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23]
 gi|227363134|ref|ZP_03847269.1| elongation factor GreA [Lactobacillus reuteri MM2-3]
 gi|227543959|ref|ZP_03974008.1| elongation factor GreA [Lactobacillus reuteri CF48-3A]
 gi|300909709|ref|ZP_07127170.1| transcription elongation factor GreA [Lactobacillus reuteri SD2112]
 gi|325682760|ref|ZP_08162276.1| transcription elongation factor GreA [Lactobacillus reuteri MM4-1A]
 gi|148531472|gb|ABQ83471.1| transcription elongation factor GreA [Lactobacillus reuteri DSM
           20016]
 gi|183225146|dbj|BAG25663.1| transcription elongation factor GreA [Lactobacillus reuteri JCM
           1112]
 gi|194453656|gb|EDX42553.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23]
 gi|227071852|gb|EEI10140.1| elongation factor GreA [Lactobacillus reuteri MM2-3]
 gi|227186075|gb|EEI66146.1| elongation factor GreA [Lactobacillus reuteri CF48-3A]
 gi|300893574|gb|EFK86933.1| transcription elongation factor GreA [Lactobacillus reuteri SD2112]
 gi|324977110|gb|EGC14061.1| transcription elongation factor GreA [Lactobacillus reuteri MM4-1A]
          Length = 158

 Score =  111 bits (278), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 103/157 (65%), Gaps = 2/157 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T +G  K++ EL   + + RP +IK I  AR+YGDLSEN+EY++AK+ Q +
Sbjct: 1   MAEEKTFPMTLEGKKKLEDELEEYRLKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAM 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+A++EN++  AE+ID   +  D ++ G T+++ E    + + YQIVG+ E+D  +G
Sbjct: 61  VESRIAQIENMLQYAEIIDNEDVDKDEVSMGRTITIQELPDEEPEEYQIVGESESDPFNG 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+A+ L+G ++G+++ V  P G    +I++V
Sbjct: 121 KISNESPMAKGLLGHKVGEVVEVEVPNGTIKLKIVKV 157


>gi|300766895|ref|ZP_07076808.1| transcription elongation factor GreA [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
 gi|300495433|gb|EFK30588.1| transcription elongation factor GreA [Lactobacillus plantarum
           subsp. plantarum ATCC 14917]
          Length = 187

 Score =  111 bits (278), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +TS G+  I+QE+   +Q +RP  I+ ++ A A GD SENAEY +AK      E R+  L
Sbjct: 39  MTSTGYHAIEQEIEDLKQ-QRPERIRILAAAAALGDRSENAEYSSAKRDLGRLESRLRYL 97

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  A+++  +  +   +  G  V++   +  D+  YQ+VG QEA+++   +S +SPI
Sbjct: 98  NKQLQYAQIVQPADNNQ--LDIGKFVTIEFLDDHDQITYQLVGKQEANLEQQKISFTSPI 155

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +AL    + D+++VNAP G    +++ V 
Sbjct: 156 GQALANHTVDDVVTVNAPNGAYQVKVIAVK 185


>gi|255526929|ref|ZP_05393824.1| transcription elongation factor GreA [Clostridium carboxidivorans
           P7]
 gi|296184898|ref|ZP_06853309.1| putative transcription elongation factor GreA [Clostridium
           carboxidivorans P7]
 gi|255509377|gb|EET85722.1| transcription elongation factor GreA [Clostridium carboxidivorans
           P7]
 gi|296050680|gb|EFG90103.1| putative transcription elongation factor GreA [Clostridium
           carboxidivorans P7]
          Length = 155

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 85/154 (55%), Gaps = 1/154 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  I +T  G  K+++EL + +  +R  I  A+  ARA GDLSENA+Y AAK+ Q++ E 
Sbjct: 1   MRSIMLTEVGKKKLEEELEYLKTVKRAEIKAALKYARAQGDLSENADYDAAKDDQSMTET 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE  +  A +I+ S           T  +   +  D +   +V   E+DV++  +S
Sbjct: 61  RIMELEQQLKNAVIIEDSDEDH-VFGINKTALVKFYDIDDTEEVTLVSSVESDVKNMKIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           I SP+  AL   E+G  ++V +P GE   E+L++
Sbjct: 120 IESPLGAALYKIEVGKKVAVESPDGEYEVEVLKI 153


>gi|257791983|ref|YP_003182589.1| transcription elongation factor GreA [Eggerthella lenta DSM 2243]
 gi|317489992|ref|ZP_07948484.1| transcription elongation factor GreA [Eggerthella sp. 1_3_56FAA]
 gi|325829881|ref|ZP_08163339.1| transcription elongation factor GreA [Eggerthella sp. HGA1]
 gi|257475880|gb|ACV56200.1| transcription elongation factor GreA [Eggerthella lenta DSM 2243]
 gi|316910990|gb|EFV32607.1| transcription elongation factor GreA [Eggerthella sp. 1_3_56FAA]
 gi|325488048|gb|EGC90485.1| transcription elongation factor GreA [Eggerthella sp. HGA1]
          Length = 156

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/152 (34%), Positives = 88/152 (57%), Gaps = 4/152 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G DK+++EL + + E+R  I + I  AR +GD+SEN+EY  AK  Q + E R+AE+
Sbjct: 8   LTQEGKDKLEEELHFLETEKRAEIGERIKVAREFGDISENSEYDDAKNEQGMMEARIAEI 67

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
             I++ A V++    S      G+TV++     G ++ + IVG  E+D  +G +S  SP+
Sbjct: 68  SRILSEATVVNTPKRSNSV-HIGSTVTV--DMGGRERVFTIVGGAESDAAAGKISNESPV 124

Query: 127 ARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
              L+G + GD++    P G K T  IL++  
Sbjct: 125 GSVLLGHKKGDVVETTGPTGRKITMTILKLEH 156


>gi|329117237|ref|ZP_08245954.1| transcription elongation factor GreA [Streptococcus parauberis NCFD
           2020]
 gi|326907642|gb|EGE54556.1| transcription elongation factor GreA [Streptococcus parauberis NCFD
           2020]
          Length = 160

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 66/156 (42%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    D+++ EL   +   RP +++ I  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 1   MAEKTYPMTQGEKDQLELELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+I+   ++ D +A G TV + E  + DK  Y IVG   AD+ SG 
Sbjct: 61  EGQISTLETKIRFAEIINSDDVAKDEVAIGKTVVVKEVGTNDKDTYHIVGAAGADIFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SPIA ALIGK+ GDI+ +  P      EI+ V
Sbjct: 121 ISNESPIAHALIGKKKGDIVKIETPAATYDVEIISV 156


>gi|168183357|ref|ZP_02618021.1| transcription elongation factor GreA [Clostridium botulinum Bf]
 gi|237793993|ref|YP_002861545.1| transcription elongation factor GreA [Clostridium botulinum Ba4
           str. 657]
 gi|182673543|gb|EDT85504.1| transcription elongation factor GreA [Clostridium botulinum Bf]
 gi|229261106|gb|ACQ52139.1| transcription elongation factor GreA [Clostridium botulinum Ba4
           str. 657]
          Length = 154

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 85/152 (55%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +  +K+++EL +R  ++R  I K   EA A+GD SENAEY+ A      N+ R+
Sbjct: 2   KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L  +I+ A VID        +   +   +       + N  +V   +AD ++ L+S+ 
Sbjct: 62  QYLLTMISTASVIDEKNQDKSVLGVNSKCKIKFVEDEFETNVSLVTTMDADPENMLISVE 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S + +AL+GK++GDI  V+APG + T E+L++
Sbjct: 122 SDLGKALMGKKVGDIAEVDAPGEKYTVEVLEI 153


>gi|15924600|ref|NP_372134.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15927190|ref|NP_374723.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus N315]
 gi|21283289|ref|NP_646377.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49483855|ref|YP_041079.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49486443|ref|YP_043664.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57652001|ref|YP_186505.1| transcription elongation factor [Staphylococcus aureus subsp.
           aureus COL]
 gi|82751210|ref|YP_416951.1| transcription elongation factor GreA [Staphylococcus aureus RF122]
 gi|87161697|ref|YP_494262.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88195419|ref|YP_500223.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148268091|ref|YP_001247034.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394159|ref|YP_001316834.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151221723|ref|YP_001332545.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156979928|ref|YP_001442187.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|161509837|ref|YP_001575496.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141120|ref|ZP_03565613.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253315240|ref|ZP_04838453.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|253733139|ref|ZP_04867304.1| transcription elongation factor [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|255006395|ref|ZP_05144996.2| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257425734|ref|ZP_05602158.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257428395|ref|ZP_05604793.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257431033|ref|ZP_05607412.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257433719|ref|ZP_05610077.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257436634|ref|ZP_05612678.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus M876]
 gi|257793685|ref|ZP_05642664.1| transcription elongation factor greA [Staphylococcus aureus A9781]
 gi|258411016|ref|ZP_05681296.1| transcription elongation factor GreA [Staphylococcus aureus A9763]
 gi|258420182|ref|ZP_05683137.1| transcription elongation factor greA [Staphylococcus aureus A9719]
 gi|258424036|ref|ZP_05686918.1| transcription elongation factor greA [Staphylococcus aureus A9635]
 gi|258438184|ref|ZP_05689468.1| transcription elongation factor greA [Staphylococcus aureus A9299]
 gi|258443647|ref|ZP_05691986.1| transcription elongation factor greA [Staphylococcus aureus A8115]
 gi|258446854|ref|ZP_05695008.1| transcription elongation factor greA [Staphylococcus aureus A6300]
 gi|258448768|ref|ZP_05696880.1| transcription elongation factor greA [Staphylococcus aureus A6224]
 gi|258450563|ref|ZP_05698625.1| transcription elongation factor greA [Staphylococcus aureus A5948]
 gi|258453587|ref|ZP_05701565.1| transcription elongation factor greA [Staphylococcus aureus A5937]
 gi|262048605|ref|ZP_06021488.1| transcription elongation factor [Staphylococcus aureus D30]
 gi|262051265|ref|ZP_06023489.1| transcription elongation factor [Staphylococcus aureus 930918-3]
 gi|269203236|ref|YP_003282505.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282893113|ref|ZP_06301347.1| transcription elongation factor greA [Staphylococcus aureus A8117]
 gi|282904191|ref|ZP_06312079.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906017|ref|ZP_06313872.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282908929|ref|ZP_06316747.1| transcription elongation factor GreB [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911247|ref|ZP_06319049.1| transcription elongation factor GreB [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282914415|ref|ZP_06322201.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282916879|ref|ZP_06324637.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus D139]
 gi|282919385|ref|ZP_06327120.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282920157|ref|ZP_06327882.1| transcription elongation factor greA [Staphylococcus aureus A9765]
 gi|282924710|ref|ZP_06332378.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus C101]
 gi|282928244|ref|ZP_06335849.1| transcription elongation factor greA [Staphylococcus aureus A10102]
 gi|283770684|ref|ZP_06343576.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus H19]
 gi|283958371|ref|ZP_06375822.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284024667|ref|ZP_06379065.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus 132]
 gi|293503490|ref|ZP_06667337.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293510507|ref|ZP_06669213.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus M809]
 gi|293531047|ref|ZP_06671729.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|294848639|ref|ZP_06789385.1| transcription elongation factor greA [Staphylococcus aureus A9754]
 gi|295406732|ref|ZP_06816537.1| transcription elongation factor greA [Staphylococcus aureus A8819]
 gi|295428187|ref|ZP_06820819.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296276729|ref|ZP_06859236.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297207670|ref|ZP_06924105.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297245686|ref|ZP_06929551.1| transcription elongation factor greA [Staphylococcus aureus A8796]
 gi|297590846|ref|ZP_06949484.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300911752|ref|ZP_07129195.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304380793|ref|ZP_07363460.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|54037220|sp|P64284|GREA_STAAW RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|54037228|sp|P99156|GREA_STAAN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|54041330|sp|P64283|GREA_STAAM RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|56748966|sp|Q6G8V9|GREA_STAAS RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|56749020|sp|Q6GG93|GREA_STAAR RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|71152090|sp|Q5HFF2|GREA_STAAC RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|123291785|sp|Q2FXW7|GREA_STAA8 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|123722377|sp|Q2FGB6|GREA_STAA3 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|123740964|sp|Q2YT68|GREA_STAAB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|166200745|sp|A7X319|GREA_STAA1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|172048917|sp|A6QHF1|GREA_STAAE RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|189042249|sp|A6U279|GREA_STAA2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|189042250|sp|A5ITD5|GREA_STAA9 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|189042251|sp|A8Z4E8|GREA_STAAT RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|13701408|dbj|BAB42702.1| transcription elongation factor [Staphylococcus aureus subsp.
           aureus N315]
 gi|14247381|dbj|BAB57772.1| transcription elongation factor [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21204729|dbj|BAB95425.1| transcription elongation factor [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49241984|emb|CAG40681.1| transcription elongation factor [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49244886|emb|CAG43347.1| transcription elongation factor [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57286187|gb|AAW38281.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus COL]
 gi|82656741|emb|CAI81170.1| transcription elongation factor [Staphylococcus aureus RF122]
 gi|87127671|gb|ABD22185.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87202977|gb|ABD30787.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|147741160|gb|ABQ49458.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149946611|gb|ABR52547.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374523|dbj|BAF67783.1| transcription elongation factor [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156722063|dbj|BAF78480.1| transcription elongation factor [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160368646|gb|ABX29617.1| elongation factor GreA [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253728895|gb|EES97624.1| transcription elongation factor [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257271428|gb|EEV03574.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257275236|gb|EEV06723.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257278236|gb|EEV08878.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257281812|gb|EEV11949.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257283985|gb|EEV14108.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus M876]
 gi|257787657|gb|EEV25997.1| transcription elongation factor greA [Staphylococcus aureus A9781]
 gi|257840166|gb|EEV64630.1| transcription elongation factor GreA [Staphylococcus aureus A9763]
 gi|257843893|gb|EEV68287.1| transcription elongation factor greA [Staphylococcus aureus A9719]
 gi|257845657|gb|EEV69689.1| transcription elongation factor greA [Staphylococcus aureus A9635]
 gi|257848228|gb|EEV72219.1| transcription elongation factor greA [Staphylococcus aureus A9299]
 gi|257851053|gb|EEV74996.1| transcription elongation factor greA [Staphylococcus aureus A8115]
 gi|257854429|gb|EEV77378.1| transcription elongation factor greA [Staphylococcus aureus A6300]
 gi|257858046|gb|EEV80935.1| transcription elongation factor greA [Staphylococcus aureus A6224]
 gi|257861721|gb|EEV84520.1| transcription elongation factor greA [Staphylococcus aureus A5948]
 gi|257864318|gb|EEV87068.1| transcription elongation factor greA [Staphylococcus aureus A5937]
 gi|259160902|gb|EEW45922.1| transcription elongation factor [Staphylococcus aureus 930918-3]
 gi|259163252|gb|EEW47811.1| transcription elongation factor [Staphylococcus aureus D30]
 gi|262075526|gb|ACY11499.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269941096|emb|CBI49482.1| transcription elongation factor [Staphylococcus aureus subsp.
           aureus TW20]
 gi|282313545|gb|EFB43940.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus C101]
 gi|282317195|gb|EFB47569.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus C427]
 gi|282319366|gb|EFB49718.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus D139]
 gi|282321596|gb|EFB51921.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus M899]
 gi|282324942|gb|EFB55252.1| transcription elongation factor GreB [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282327193|gb|EFB57488.1| transcription elongation factor GreB [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282331309|gb|EFB60823.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus Btn1260]
 gi|282590051|gb|EFB95133.1| transcription elongation factor greA [Staphylococcus aureus A10102]
 gi|282594505|gb|EFB99490.1| transcription elongation factor greA [Staphylococcus aureus A9765]
 gi|282595809|gb|EFC00773.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus C160]
 gi|282764431|gb|EFC04557.1| transcription elongation factor greA [Staphylococcus aureus A8117]
 gi|283460831|gb|EFC07921.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus H19]
 gi|283470887|emb|CAQ50098.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Staphylococcus aureus subsp. aureus ST398]
 gi|283790520|gb|EFC29337.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285817292|gb|ADC37779.1| Transcription elongation factor GreA [Staphylococcus aureus
           04-02981]
 gi|290920315|gb|EFD97381.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291095156|gb|EFE25421.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291466871|gb|EFF09391.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus M809]
 gi|294824665|gb|EFG41088.1| transcription elongation factor greA [Staphylococcus aureus A9754]
 gi|294968479|gb|EFG44503.1| transcription elongation factor greA [Staphylococcus aureus A8819]
 gi|295128545|gb|EFG58179.1| transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus EMRSA16]
 gi|296887687|gb|EFH26585.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297177337|gb|EFH36589.1| transcription elongation factor greA [Staphylococcus aureus A8796]
 gi|297575732|gb|EFH94448.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus MN8]
 gi|298694890|gb|ADI98112.1| transcription elongation factor [Staphylococcus aureus subsp.
           aureus ED133]
 gi|300885998|gb|EFK81200.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|302333284|gb|ADL23477.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus JKD6159]
 gi|302751439|gb|ADL65616.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus str. JKD6008]
 gi|304340669|gb|EFM06602.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312437922|gb|ADQ76993.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|312829997|emb|CBX34839.1| transcription elongation factor greA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315195510|gb|EFU25897.1| elongation factor GreA [Staphylococcus aureus subsp. aureus CGS00]
 gi|315198693|gb|EFU29021.1| elongation factor GreA [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140503|gb|EFW32357.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144042|gb|EFW35811.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323439043|gb|EGA96775.1| transcription elongation factor GreA [Staphylococcus aureus O11]
 gi|323442814|gb|EGB00439.1| transcription elongation factor GreA [Staphylococcus aureus O46]
 gi|329314285|gb|AEB88698.1| Transcription elongation factor greA [Staphylococcus aureus subsp.
           aureus T0131]
 gi|329727213|gb|EGG63669.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329728459|gb|EGG64896.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329733259|gb|EGG69596.1| transcription elongation factor GreA [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 158

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 98/155 (63%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +GF+K+++EL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 5   KQYPMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E+++  A +I+ +  + + +  G TV+ VE    ++++YQIVG  E+D  +G +S 
Sbjct: 65  IQRIEHMLRNALIIEDTGDN-NVVKIGKTVTFVELPGDEEESYQIVGSAESDAFNGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPG-GEKTYEILQVL 156
            SP+A+ALIGK L D + V  P  GE   +I+ + 
Sbjct: 124 ESPMAKALIGKGLDDEVRVPLPNGGEMNVKIVNIQ 158


>gi|257457224|ref|ZP_05622399.1| transcript cleavage factor/unknown domain fusion protein [Treponema
           vincentii ATCC 35580]
 gi|257445375|gb|EEV20443.1| transcript cleavage factor/unknown domain fusion protein [Treponema
           vincentii ATCC 35580]
          Length = 892

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/149 (36%), Positives = 92/149 (61%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VTSK  ++ ++EL+   + E PR  K +  A + GDL EN+EY+AAKE QN     ++ L
Sbjct: 739 VTSKMLEEKKKELQRLIEVEIPRNSKEVGFALSLGDLRENSEYKAAKEEQNRLNNTVSRL 798

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  + RA+V D +T++  R+ FG  V+L +  S +K+ Y I+G  E+D ++G++S  SP+
Sbjct: 799 QEELERAQVFDPTTITTTRVGFGTVVTLEKPGSNEKETYTILGPWESDPENGVISYMSPL 858

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
              L+  ++G+ +S      EKTY+IL +
Sbjct: 859 GTNLLNHKVGETLSFTVNEEEKTYKILDI 887


>gi|154484003|ref|ZP_02026451.1| hypothetical protein EUBVEN_01711 [Eubacterium ventriosum ATCC
           27560]
 gi|149735045|gb|EDM50931.1| hypothetical protein EUBVEN_01711 [Eubacterium ventriosum ATCC
           27560]
          Length = 166

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 81/155 (52%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             K  +T  G  +++ EL   +  +R  + + I EAR  GDLSENAEY AAK+ Q   E 
Sbjct: 9   AKKNILTYAGLQELEAELEDLKVNKRKEVAQKIKEAREQGDLSENAEYDAAKDEQRDIEA 68

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ++E I+   EV+  S +   +I  G  + + +    +   + IVG  + +  SG +S
Sbjct: 69  RIEDIEKILKNVEVVAESDIDDTKINVGCHIIIHDFEYDEDLEFSIVGSTQTNSLSGKIS 128

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+  ALIG E+GDI+ V        Y++L + 
Sbjct: 129 NESPLGHALIGHEVGDIVEVEMGDTVSKYKVLDIK 163


>gi|319946449|ref|ZP_08020686.1| transcription elongation factor GreA [Streptococcus australis ATCC
           700641]
 gi|319747417|gb|EFV99673.1| transcription elongation factor GreA [Streptococcus australis ATCC
           700641]
          Length = 160

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T     K++ EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLAEKQKLELELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE++D   ++ D +A G TV++ E    ++  Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVDSDAVAVDEVAIGKTVTVQEIGEDEEDVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPI  ALIGK+ GD +++  P G    +IL V 
Sbjct: 121 ISNESPIGHALIGKKTGDTVTIETPAGSYQVKILNVE 157


>gi|300855815|ref|YP_003780799.1| putative transcription elongation factor [Clostridium ljungdahlii
           DSM 13528]
 gi|300435930|gb|ADK15697.1| predicted transcription elongation factor [Clostridium ljungdahlii
           DSM 13528]
          Length = 154

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 85/151 (56%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +  DK+++EL +R   +R  I K    A A+GD SENAEY+ A      N+ R+
Sbjct: 2   KNILTQENIDKLREELDYRMTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L ++I+ A VID+ +     I   +   +      D++   +V   +AD ++ L+SI 
Sbjct: 62  QYLLSMISTATVIDVKSADKSVIGVNSKFKIKFVEDEDEEIVSLVTTIDADPENMLISIE 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           S + +AL+GK++GD + V+AP  + T EIL+
Sbjct: 122 SDLGKALVGKKVGDTVEVDAPSEKYTVEILE 152


>gi|92114676|ref|YP_574604.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM
           3043]
 gi|91797766|gb|ABE59905.1| GreA/GreB family elongation factor [Chromohalobacter salexigens DSM
           3043]
          Length = 178

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 83/151 (54%), Gaps = 1/151 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T++G+ +++       + +RP +   + EA A GD SENA+Y   K+  N    R+  L
Sbjct: 25  ITARGYARLKGIHEHLSRVKRPALSTKVGEAAALGDRSENADYTYNKKELNRVIARIRYL 84

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +   +V+D       R+ FGA V+L + +   +   +IVG  E D     +S+ +P+
Sbjct: 85  GKRLDELQVVDRLPADTSRVYFGAYVTLEDDDGE-EMTIRIVGHDETDTDKRWISVDAPL 143

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           A+A++GK L + ++VNAPGG+ TY I  + +
Sbjct: 144 AQAMLGKGLDEDVTVNAPGGDTTYIITDIAY 174


>gi|254443766|ref|ZP_05057242.1| transcription elongation factor GreA domain protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198258074|gb|EDY82382.1| transcription elongation factor GreA domain protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 617

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           V+   ++K   E      ++ P   +AI+EAR  GDL EN+EY+ AK+ Q +   R   L
Sbjct: 462 VSKGSYEKAVAEFDDIVTKKIPENSQAIAEARELGDLKENSEYKMAKQDQQILMSRRNLL 521

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E  I RA++ D ++ + + I  G  V+L ++  G +  Y ++G  + D  + ++S  +P+
Sbjct: 522 EADIKRAQITDFTSATTETIGIGNIVTLKDEKDGSEVTYTLLGAWDGDPDNFIISYLTPL 581

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV-LWI 158
            ++++GK +GD +SV     E    I  +  +I
Sbjct: 582 GKSMLGKRIGDEVSVTVGSTENKLTITDITRYI 614


>gi|193216587|ref|YP_001999829.1| transcription elongation factor [Mycoplasma arthritidis 158L3-1]
 gi|259647648|sp|B3PM73|GREA_MYCA5 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|193001910|gb|ACF07125.1| transcription elongation factor [Mycoplasma arthritidis 158L3-1]
          Length = 159

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 56/154 (36%), Positives = 94/154 (61%), Gaps = 2/154 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KI +T+  F + Q+ L++ Q+  RP++I+ I EAR  GDLSENAEY AA++ Q   E  
Sbjct: 6   EKIYLTADSFKQYQERLQYLQEVLRPQVIEEIKEARNQGDLSENAEYDAARDKQATIENE 65

Query: 63  MAELENIITRAEVIDISTMSG-DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           + E+++I+   E+I   T      +  G+ VS+V        N+QIVG  + D  +G +S
Sbjct: 66  ITEIQHILDNYEIIKTQTNRQVSVVRIGSNVSVVSLKDDTVINFQIVGALDTDPFNGKIS 125

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +SP+A+A+IG++ G+++ V AP  +   +I+ V
Sbjct: 126 NTSPLAKAVIGRKAGEVVEVEAPN-KYQVKIVHV 158


>gi|300856704|ref|YP_003781688.1| putative transcription elongation factor [Clostridium ljungdahlii
           DSM 13528]
 gi|300436819|gb|ADK16586.1| predicted transcription elongation factor [Clostridium ljungdahlii
           DSM 13528]
          Length = 154

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/153 (31%), Positives = 83/153 (54%), Gaps = 1/153 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  + +T  G  K++ EL + +  +R  I  A+  ARA GDLSENA+Y AAK+ Q++ E 
Sbjct: 1   MQDVILTESGKKKLEDELEYLKTVKRVEIKLALKAARAQGDLSENADYDAAKDDQSMTET 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE  +  A +I+ S+   D      T  +   +  + +   +V   EADV++  +S
Sbjct: 61  RIQELEAQLKNAVIIE-SSSEADVFDINKTALVKFCDVDETEEVTLVSTVEADVKNMKIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           I SP+ +AL   ++G   +V +P G    ++ +
Sbjct: 120 IESPLGKALYKLKVGQKATVASPDGSYDVQVEK 152


>gi|328884670|emb|CCA57909.1| Transcription elongation factor GreA [Streptomyces venezuelae ATCC
           10712]
          Length = 165

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + ++K++ EL +     R  I   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNKLKDELEYLSGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +     G            + +  D   + +   + A       S  SP
Sbjct: 70  LTQLLQHAKVGEAPADDGVVEPGMVVTIAFDGDENDTMTFLLASREYASGDIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   + GK+ GD      P G+K T +IL 
Sbjct: 130 LGVGVNGKKAGDDAQYELPNGKKATVKILS 159


>gi|329666577|gb|AEB92525.1| transcription elongation factor GreA [Lactobacillus johnsonii DPC
           6026]
          Length = 153

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/149 (33%), Positives = 85/149 (57%), Gaps = 3/149 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   ++ +RPR IK + EAR+ GDLSEN+EY  AK      + R+  L
Sbjct: 7   MTPEGYQEIKDEIARLKK-DRPRRIKILQEARSMGDLSENSEYTTAKMELGHLQSRLRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  +  +E+I         I  G+ V+L+     + + Y+IVG  EAD+  G +S  SP+
Sbjct: 66  DKQLRYSEII--QKDESGTIDLGSNVTLLFDGDDEAEKYRIVGRMEADLAKGKISFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
            +AL+ ++ G  ++V AP G    +I+ V
Sbjct: 124 GQALMKQKAGATVTVEAPAGSYDVKIIAV 152


>gi|72160851|ref|YP_288508.1| transcription elongation factor GreA [Thermobifida fusca YX]
 gi|71914583|gb|AAZ54485.1| prokaryotic transcription elongation factor GreA [Thermobifida
           fusca YX]
          Length = 167

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 2/150 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +D++  EL +     R  I   I  AR  GDL EN  Y AAKE Q   E R+A 
Sbjct: 11  WLTQEAYDRLTAELEYLSGPGRIEIADRIEAAREEGDLRENGGYHAAKEEQGKIEARIAH 70

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L++I++ A V          +  G TV++  +   ++  + +   +E+     + S  SP
Sbjct: 71  LQSILSNARVGQAPQRE-GVVGPGMTVTIKFEGDEEEMTFLLASREESGAPIDVYSPKSP 129

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQ 154
           +  A+ GK++G+ ++   P G E T EIL 
Sbjct: 130 LGEAINGKKVGEKVTYKLPSGKEATVEILD 159


>gi|293400456|ref|ZP_06644601.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291305482|gb|EFE46726.1| transcription elongation factor GreA [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 158

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 1/155 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K  VT +G D++ +E        R  +I  + EARA GDLSENA+Y AA++ Q   E R
Sbjct: 4   EKFYVTKEGLDELLKEQDNLIHVVRDEVILELQEARAQGDLSENADYDAARDHQARVEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIA-FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           + ELE +I  AE+I+    +  +    G+TV++ + +S +++ Y IVG  EAD  +G +S
Sbjct: 64  IRELEAMIANAEIIEGDKETSSKTVGLGSTVTIKDLSSEEEETYTIVGSIEADPLNGKLS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             +P+A AL+  +LGDI+ V+        +I+ + 
Sbjct: 124 NITPLAVALLDNKLGDIVEVSNVEEPYKVKIVNLK 158


>gi|323465752|gb|ADX69439.1| Transcription elongation factor [Lactobacillus helveticus H10]
          Length = 153

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 85/150 (56%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   ++ +RPR IK +  ARA GDLSEN EY  AK      + R+  L
Sbjct: 7   MTPEGYKQIEDEIVRLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AE+  + T    ++ +G TV L   +  + + Y+IVG  EAD+  G +S  SP+
Sbjct: 66  GKQLKYAEI--VKTTDDGKVDWGKTVVLKFDDDDETEEYKIVGHMEADLADGKISFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A++ +E G + +V AP GE    I++V 
Sbjct: 124 GQAIMKQEAGGVATVEAPAGEYKVTIVEVK 153


>gi|157693131|ref|YP_001487593.1| transcription elongation factor GreA [Bacillus pumilus SAFR-032]
 gi|189042234|sp|A8FFL6|GREA_BACP2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|157681889|gb|ABV63033.1| transcription elongation factor [Bacillus pumilus SAFR-032]
          Length = 157

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 54/132 (40%), Positives = 85/132 (64%), Gaps = 1/132 (0%)

Query: 24  QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83
             +R  +++ I  AR++GDLSEN+EY +AKE Q   EGR+  L+N+I  A++I+    S 
Sbjct: 26  TVKRKEVVERIKIARSFGDLSENSEYDSAKEEQAFVEGRITTLDNMIRNAKIIEDEGNSN 85

Query: 84  DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
                G TV+ VE   G++++Y IVG  EAD   G +S  SPIA++L+GK++ D ++V  
Sbjct: 86  IVS-LGKTVTFVELPDGEEESYTIVGSAEADPFEGKISNDSPIAKSLLGKQVDDKVTVQT 144

Query: 144 PGGEKTYEILQV 155
           PGGE   +I+++
Sbjct: 145 PGGEMFVQIVKI 156


>gi|28377155|ref|NP_784047.1| transcription elongation factor GreA [Lactobacillus plantarum
           WCFS1]
 gi|38257536|sp|Q88ZS9|GREA1_LACPL RecName: Full=Transcription elongation factor greA 1; AltName:
           Full=Transcript cleavage factor greA 1
 gi|28269986|emb|CAD62886.1| transcription elongation factor GreA [Lactobacillus plantarum
           WCFS1]
          Length = 156

 Score =  111 bits (276), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 84/150 (56%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G+  I+QE+   +Q +RP  I+ ++ A A GD SENAEY +AK      E R+  L
Sbjct: 8   MTAAGYHAIEQEIEDLKQ-QRPERIRILAAAAALGDRSENAEYSSAKRDLGRLESRLRYL 66

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  A+++  +      +  G  V++   +  D+  YQ+VG QEA+++   +S +SPI
Sbjct: 67  NKQLQYAQIVQPADNDQ--LDIGKFVTIEFLDDHDQITYQLVGKQEANLEQQKISFTSPI 124

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +AL    + D+++VNAP G    +++ V 
Sbjct: 125 GQALANHTVDDVVTVNAPNGAYQVKVIAVK 154


>gi|182415840|ref|YP_001820906.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
 gi|177843054|gb|ACB77306.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
          Length = 616

 Score =  111 bits (276), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 80/153 (52%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +++ V+   +++ ++E      ++ P   KAI+ AR +GDL EN+EY+ AK+ Q +    
Sbjct: 456 EQLIVSKASYERKREEYETIVSKKIPENSKAIAAAREHGDLRENSEYKMAKQEQQVLMAH 515

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
              LE  + RA + D    S D+++ G  V +     G    Y ++G  + D +   +S 
Sbjct: 516 KTNLERDLGRARISDFKDASIDQVSVGTVVEVASVKDGHHTTYTVLGAWDGDPEKHFISY 575

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +P   AL+GK+ GD+I+V     ++ Y I+ +
Sbjct: 576 KTPFGAALLGKKTGDVINVKTDASDEDYAIVSI 608


>gi|255523780|ref|ZP_05390745.1| transcription elongation factor GreA [Clostridium carboxidivorans
           P7]
 gi|255512483|gb|EET88758.1| transcription elongation factor GreA [Clostridium carboxidivorans
           P7]
          Length = 154

 Score =  111 bits (276), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 84/152 (55%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +  DK+++EL +R   +R +I K    A A+GD SENAEY+ A      N+ R+
Sbjct: 2   KNILTQENIDKLKEELDYRMTVKRAQIAKEKLVAAAHGDRSENAEYKEACANYRENDNRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L  +I+ A V+D  +     I   +   +   +  D++   +V   +AD ++ L+S+ 
Sbjct: 62  QYLLTMISTAIVVDDKSQDKSVIGVNSKFKIKFVDDEDEEVVSLVTTVDADPENMLISVE 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S + +AL+ K+ GDI+ VNAP    T EIL++
Sbjct: 122 SDLGKALMSKKAGDIVEVNAPSENYTVEILEI 153


>gi|302553811|ref|ZP_07306153.1| transcription elongation factor greA [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471429|gb|EFL34522.1| transcription elongation factor greA [Streptomyces
           viridochromogenes DSM 40736]
          Length = 165

 Score =  111 bits (276), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + ++K++ EL +     R  I   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNKLKAELEYLTGPARAEISAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +     G            + +  D   + +   + A       S  SP
Sbjct: 70  LTQLLESAKVGEAPAADGAVAPGMVVTIAFDGDEDDTLTFLLASREYASADIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   +IG ++G+      P G+K + +IL+
Sbjct: 130 LGAGVIGHKVGEDAEYELPNGKKASVKILK 159


>gi|313897330|ref|ZP_07830873.1| transcription elongation factor GreA [Clostridium sp. HGF2]
 gi|312957700|gb|EFR39325.1| transcription elongation factor GreA [Clostridium sp. HGF2]
          Length = 159

 Score =  111 bits (276), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 92/156 (58%), Gaps = 2/156 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K  VT +G D++ +E        R  +I+ + EARA GDLSENA+Y AA++ Q   E R
Sbjct: 4   EKFLVTKEGLDELLKEQDNLIHVVRDEVIRELQEARAQGDLSENADYDAARDRQARVEAR 63

Query: 63  MAELENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           + +LE +I  AE+I  D    +   ++ G+TV++++ ++ +++ Y IVG  EAD  +G +
Sbjct: 64  IRDLEAMIANAEIISEDKKAATKKTVSLGSTVTILDMSTNEEETYNIVGSIEADPLNGKL 123

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           S  +P+A +L+  ++GD++ +         +++ + 
Sbjct: 124 SNITPLATSLMDHKIGDVVEIETAEEPYQVKVIDLK 159


>gi|111225557|ref|YP_716351.1| transcription elongation factor GreA [Frankia alni ACN14a]
 gi|111153089|emb|CAJ64836.1| Transcription elongation factor greA (Transcript cleavage factor
           greA) [Frankia alni ACN14a]
          Length = 163

 Score =  111 bits (276), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 71/155 (45%), Gaps = 2/155 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             +  +T + +D+++ EL +     R  I   I  AR  GDL EN  Y AAKE Q   E 
Sbjct: 5   TQQTWLTQEAYDRLRSELDYLTGPWRTEIATKIEAAREEGDLKENGGYHAAKEEQGKQEA 64

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L +++  A+V + S  +      G  V +      + + + I   ++      + S
Sbjct: 65  RIRQLSDLLRDAQVGE-SPATTGEAGPGTVVEVRFPGEQETEKFLIGSREDHSAPIDVFS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
            +SP+  A+ G + G+ +S   P G     EI+ V
Sbjct: 124 PASPLGGAVNGHKAGETVSYTLPNGRSAKVEIVSV 158


>gi|253732265|ref|ZP_04866430.1| transcription elongation factor [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253724054|gb|EES92783.1| transcription elongation factor [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
          Length = 158

 Score =  111 bits (276), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 96/155 (61%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +GF+K+++EL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 5   KQYPMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E+++  A +I+ +  +      G TV+ VE    ++++YQIVG  E+D  +G +S 
Sbjct: 65  IQRIEHMLRNALIIEDTGDNNIV-KIGKTVTFVELPGDEEESYQIVGSAESDAFNGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPG-GEKTYEILQVL 156
            SP+A+ALIGK L D + V  P  GE   +I+ + 
Sbjct: 124 ESPMAKALIGKGLDDEVRVPLPNGGEMNVKIVNIQ 158


>gi|58336547|ref|YP_193132.1| transcription elongation factor GreA [Lactobacillus acidophilus
           NCFM]
 gi|227903098|ref|ZP_04020903.1| transcription elongation factor GreA [Lactobacillus acidophilus
           ATCC 4796]
 gi|58253864|gb|AAV42101.1| transcriptional elongation factor [Lactobacillus acidophilus NCFM]
 gi|227869084|gb|EEJ76505.1| transcription elongation factor GreA [Lactobacillus acidophilus
           ATCC 4796]
          Length = 153

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 86/150 (57%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   ++ +RPR IK + +ARA GDLSEN EY  AK      + R+  L
Sbjct: 7   MTPEGYKQIEDEIARLKK-DRPRRIKILQDARALGDLSENTEYTEAKRDLGHLQSRLRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  +  AE+++  T    ++  G TV L   +  + + Y+IVG  EA+++ G +S  SP+
Sbjct: 66  DKQLKYAEIVE--TKDDGKVDLGKTVVLKFDDDDETEEYKIVGRMEANLEDGKISFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A++ KE G    V AP GE    I++V 
Sbjct: 124 GQAIMKKEAGVTSIVEAPAGEYKVTIVEVK 153


>gi|24380100|ref|NP_722055.1| transcription elongation factor GreA [Streptococcus mutans UA159]
 gi|290579921|ref|YP_003484313.1| putative transcription elongation factor [Streptococcus mutans
           NN2025]
 gi|81450943|sp|Q8DSP7|GREA_STRMU RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|24378096|gb|AAN59361.1|AE015001_6 putative transcription elongation factor GreA [Streptococcus mutans
           UA159]
 gi|254996820|dbj|BAH87421.1| putative transcription elongation factor [Streptococcus mutans
           NN2025]
          Length = 160

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    ++++QEL   +   RP +I+ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MSEKTYPMTLAEKEQLEQELEELKLVRRPEVIERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ +E  I  AE++D   ++ + +A G TV + E  + D+  Y IVG   ADV +G 
Sbjct: 61  EGQISSIETKIRYAEIVDSDAVAKNEVAIGKTVIVREVGTNDEDTYSIVGAAGADVFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK+ GD + + +P G    EI++V 
Sbjct: 121 ISNESPIAQALIGKKTGDKVMIESPAGSYQVEIVKVK 157


>gi|319400941|gb|EFV89160.1| transcription elongation factor greA [Staphylococcus epidermidis
           FRI909]
          Length = 158

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 59/155 (38%), Positives = 96/155 (61%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +G++K++QEL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 5   KQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E++I  A +I+      + +  G TV+ +E    ++++YQIVG  EAD   G +S 
Sbjct: 65  IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
            SP+A ALIGK L D + V  P GGE   +I+++ 
Sbjct: 124 ESPMAIALIGKGLNDQVRVPLPNGGEMNVKIVEIK 158


>gi|300362488|ref|ZP_07058664.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03]
 gi|300353479|gb|EFJ69351.1| transcription elongation factor GreA [Lactobacillus gasseri JV-V03]
          Length = 153

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 3/149 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   ++ +RPR IK + EAR+ GDLSEN+EY  AK      + R+  L
Sbjct: 7   MTPEGYQEIKDEIARLKK-DRPRRIKILQEARSMGDLSENSEYTTAKMELGHLQSRLRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  +  +E+I         I  G+ V L+ +   D + Y+IVG  EAD+  G +S  SP+
Sbjct: 66  DKQLRYSEII--QKDKSGTIDLGSNVKLLFEGDDDAEEYRIVGRMEADLTKGKISFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
            +AL+ ++ G  ++V AP G    +I+ V
Sbjct: 124 GQALMKQKAGATVTVEAPAGSYDVKIIAV 152


>gi|242242884|ref|ZP_04797329.1| elongation factor GreA [Staphylococcus epidermidis W23144]
 gi|242233659|gb|EES35971.1| elongation factor GreA [Staphylococcus epidermidis W23144]
          Length = 161

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 58/155 (37%), Positives = 95/155 (61%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +G++K++QEL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 8   KQYPMTQEGYEKLEQELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 67

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E++I  A +I+      + +  G TV+ +E    ++++YQIVG  EAD   G +S 
Sbjct: 68  IQRIEHMIRNALIIE-DNGDNNVVQIGKTVTFIELPGDEEESYQIVGSAEADAFKGKISN 126

Query: 123 SSPIARALIGKELGDIISVNAPG-GEKTYEILQVL 156
            SP+A ALIGK L D + V  P  GE   +I+++ 
Sbjct: 127 ESPMAIALIGKGLNDQVRVPLPNGGEMNVKIVEIK 161


>gi|222152570|ref|YP_002561745.1| transcription elongation factor GreA [Streptococcus uberis 0140J]
 gi|254799570|sp|B9DTR1|GREA_STRU0 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|222113381|emb|CAR41021.1| transcription elongation factor [Streptococcus uberis 0140J]
          Length = 160

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    +++++EL   +   RP +++ I  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 1   MAEKTYPMTKAEKEQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+ID   ++ D +A G TV + E  + DK  Y IVG   AD+ SG 
Sbjct: 61  EGQISTLETQIRFAEIIDSDAVAKDEVAIGKTVVVQEVGTTDKDTYHIVGSAGADIFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK+ GDI  + +P      EI+ V 
Sbjct: 121 ISNESPIAQALIGKKKGDIADIVSPATTYQVEIISVE 157


>gi|116628860|ref|YP_814032.1| transcription elongation factor GreA [Lactobacillus gasseri ATCC
           33323]
 gi|238852826|ref|ZP_04643231.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4]
 gi|282852524|ref|ZP_06261866.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Lactobacillus gasseri 224-1]
 gi|311111317|ref|ZP_07712714.1| transcription elongation factor GreA 1 (Transcript cleavage factor
           greA 1) [Lactobacillus gasseri MV-22]
 gi|116094442|gb|ABJ59594.1| transcription elongation factor GreA [Lactobacillus gasseri ATCC
           33323]
 gi|238834520|gb|EEQ26752.1| transcription elongation factor GreA [Lactobacillus gasseri 202-4]
 gi|282556266|gb|EFB61886.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Lactobacillus gasseri 224-1]
 gi|311066471|gb|EFQ46811.1| transcription elongation factor GreA 1 (Transcript cleavage factor
           greA 1) [Lactobacillus gasseri MV-22]
          Length = 153

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 3/149 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   ++ +RPR IK + EAR+ GDLSEN+EY  AK      + R+  L
Sbjct: 7   MTPEGYQEIKDEIARLKK-DRPRRIKILQEARSMGDLSENSEYTTAKMELGHLQSRLRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  +  +E+I         I  G+ V L+ +   D + Y+IVG  EAD+  G +S  SP+
Sbjct: 66  DKQLRYSEII--QKDESGTIDLGSNVKLLFEGDDDAEEYRIVGRMEADLAKGKISFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
            +AL+ ++ G  ++V AP G    +I+ V
Sbjct: 124 GQALMKQKAGATVTVQAPAGSYDVKIIAV 152


>gi|25453004|sp|Q98Q16|GREA_MYCPU RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
          Length = 157

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 3/153 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KI +T +   K ++E       ERP +I  I EAR  GDLSENAEY AA+E Q   E R
Sbjct: 5   NKIYLTQETIKKYEEEKWHLINVERPAVILEIKEARQQGDLSENAEYDAAREKQGQIEDR 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELENI++ A  I  S    D+I  G+ V ++ +++G ++ ++IVG  + D     +S 
Sbjct: 65  ITELENILSNAISIQESHS--DKIGLGSVVRILNQSTGKERTFKIVGSFDTDPTQNKISY 122

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SP+A+++IG   GD++ ++AP  + T +IL V
Sbjct: 123 ESPLAKSIIGFSKGDVVEIDAPD-KYTTKILSV 154


>gi|254555375|ref|YP_003061792.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1]
 gi|308179372|ref|YP_003923500.1| transcription elongation factor GreA [Lactobacillus plantarum
           subsp. plantarum ST-III]
 gi|254044302|gb|ACT61095.1| transcription elongation factor GreA [Lactobacillus plantarum JDM1]
 gi|308044863|gb|ADN97406.1| transcription elongation factor GreA [Lactobacillus plantarum
           subsp. plantarum ST-III]
          Length = 156

 Score =  110 bits (275), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G+  I+QE+   +Q +RP  I+ ++ A A GD SENAEY +AK      E R+  L
Sbjct: 8   MTATGYHAIEQEIEDLKQ-QRPERIRILAAAAALGDRSENAEYSSAKRDLGRLESRLRYL 66

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  A+++  +  +   +  G  V++   +  D+  YQ+VG QEA+++   +S +SPI
Sbjct: 67  NKQLQYAQIVQPADNNQ--LDIGKFVTIEFLDDHDQITYQLVGKQEANLEQQKISFTSPI 124

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +AL    + D+++VNAP G    +++ V 
Sbjct: 125 GQALANHTVDDVVTVNAPNGAYQVKVIAVK 154


>gi|297202039|ref|ZP_06919436.1| transcription elongation factor greA [Streptomyces sviceus ATCC
           29083]
 gi|197714326|gb|EDY58360.1| transcription elongation factor greA [Streptomyces sviceus ATCC
           29083]
          Length = 166

 Score =  110 bits (275), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 2/151 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + + K+++EL +     R  +   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYTKLKEELAYLSGPAREEVTAKIAAAREEGDLRENGGYHAAKEEQGKQELRIRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           L  ++ +A+V +  T +   +A G  V++  + +  D   + +   + A       S  S
Sbjct: 70  LTQLLEKAKVGEAPTSTDGAVAPGMVVTIAFDGDESDTMTFLLASREYASADVETYSPQS 129

Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
           P+   +IG ++G+      P G+K +  IL+
Sbjct: 130 PLGSGVIGHKVGEDAEYELPNGKKASVTILK 160


>gi|329935321|ref|ZP_08285287.1| transcription elongation factor GreA [Streptomyces
           griseoaurantiacus M045]
 gi|329305144|gb|EGG49003.1| transcription elongation factor GreA [Streptomyces
           griseoaurantiacus M045]
          Length = 166

 Score =  110 bits (275), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 2/151 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + ++K++ EL +     R  I   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNKLKDELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           L  ++ +A+V +        +  G  V++  + +  D  ++ +   + A       S  S
Sbjct: 70  LTQLLEQAQVGEAQASEDGAVGPGMVVTIAFDGDEDDTLSFLLASREYASSDIETYSPQS 129

Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
           P+   +IG ++G+      P G+K + +IL+
Sbjct: 130 PLGSGVIGHKVGEDAEYELPNGKKASVKILK 160


>gi|308234247|ref|ZP_07664984.1| GreA/GreB family elongation factor [Atopobium vaginae DSM 15829]
 gi|328943529|ref|ZP_08240994.1| transcription elongation factor GreA [Atopobium vaginae DSM 15829]
 gi|327491498|gb|EGF23272.1| transcription elongation factor GreA [Atopobium vaginae DSM 15829]
          Length = 157

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 92/158 (58%), Gaps = 5/158 (3%)

Query: 2   VDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           +DK  + +T +G  K+  EL +R+ E+   I++ + EAR +GDLSEN+EY AAKE Q+LN
Sbjct: 1   MDKKELILTPEGRQKLVDELAYREGEKHEEIVERLKEARGFGDLSENSEYDAAKEEQSLN 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ E+  I+  A+V++ +         G TV L +K  G   ++ IVG  E D     
Sbjct: 61  ESRINEIRQILATAKVVEHTDGELSVS-IGTTVELSDKK-GKSISFTIVGTTETDSLEHK 118

Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           +S  SP    LIG  +GD++S + P G EKTY IL + 
Sbjct: 119 ISNESPAGAELIGHVVGDVVSFSTPSGKEKTYTILNIT 156


>gi|269114909|ref|YP_003302672.1| transcription elongation factor GreA [Mycoplasma hominis]
 gi|268322534|emb|CAX37269.1| Transcription elongation factor greA(Transcript cleavage factor
           greA) [Mycoplasma hominis ATCC 23114]
          Length = 156

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 54/153 (35%), Positives = 93/153 (60%), Gaps = 3/153 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KI +T +   + Q++L++ Q+  RP++I+ I EAR  GDLSENAEY +A++ Q   E  
Sbjct: 6   NKIYLTEESLKQYQEKLKYLQEVARPQVIEEIKEARNQGDLSENAEYDSARDKQAAIENE 65

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+++I+   E+I  ++    R   G+TV L+  N+ +    +IVG  +AD  +  +S 
Sbjct: 66  ILEIQHILENVEIIKSTSTHTIR--IGSTVKLININTNEISEVKIVGALDADPFNNKISN 123

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +SP+A AL GK++G +I V AP  +   +I  +
Sbjct: 124 TSPLAIALNGKKVGQVIEVEAPK-KYKVKIESI 155


>gi|290957897|ref|YP_003489079.1| transcription elongation factor [Streptomyces scabiei 87.22]
 gi|260647423|emb|CBG70528.1| putative transcription elongation factor [Streptomyces scabiei
           87.22]
          Length = 166

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 2/151 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +++++ EL +     R  I   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNQLRAELDYLSGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           L  ++  A+V +    +   +A G  V++  + +  D   + +   + A       S  S
Sbjct: 70  LTQLLENAKVGEAPASADGAVAPGMVVTIAFDGDEDDTVTFLLASREYASSDIETYSPQS 129

Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
           P+   + GK++G       P G+  + +IL+
Sbjct: 130 PLGSGVTGKKVGQDAQYELPNGKFASVKILK 160


>gi|256849256|ref|ZP_05554689.1| transcription elongation factor GreA [Lactobacillus crispatus
           MV-1A-US]
 gi|312978351|ref|ZP_07790093.1| transcription elongation factor GreA 1 (Transcript cleavage
           factorgreA 1) [Lactobacillus crispatus CTV-05]
 gi|256714032|gb|EEU29020.1| transcription elongation factor GreA [Lactobacillus crispatus
           MV-1A-US]
 gi|310894694|gb|EFQ43766.1| transcription elongation factor GreA 1 (Transcript cleavage
           factorgreA 1) [Lactobacillus crispatus CTV-05]
          Length = 153

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 83/150 (55%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   ++ +RPR IK +  ARA GDLSEN EY  AK      + R+  L
Sbjct: 7   MTPEGYQQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AE++        ++  G TV L   +  + + Y++VG  EAD+ +G VS  SP+
Sbjct: 66  GKQLKYAEIVKAEDD--GKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A++ KE G   +V AP GE    I++V 
Sbjct: 124 GQAIMKKEAGTTATVAAPVGEYQVTIVEVK 153


>gi|322435432|ref|YP_004217644.1| transcription elongation factor GreB [Acidobacterium sp. MP5ACTX9]
 gi|321163159|gb|ADW68864.1| transcription elongation factor GreB [Acidobacterium sp. MP5ACTX9]
          Length = 200

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 5/158 (3%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G ++++ E  +   ++RP +++ ++ A + GD SENA+YQ +K      +GR+
Sbjct: 21  KNYITPGGIERLKAERHFLLTKDRPAVVQVVAWAASNGDRSENADYQYSKRRLRQIDGRV 80

Query: 64  AELENIITRAEVIDISTMSG----DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
             L   I  AEVID           R  FGATV       G  +   IVG  E ++    
Sbjct: 81  RFLTKRIEAAEVIDPEAPRTGQRATRAFFGATVRYANAA-GIVRVVSIVGTDEVNLDRNH 139

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +S +SP+ RAL+     D + ++APGG +T  +L+V +
Sbjct: 140 ISWASPLGRALMKAGEDDEVVLHAPGGTETLTVLEVRY 177


>gi|162447758|ref|YP_001620890.1| transcription elongation factor GreA [Acholeplasma laidlawii PG-8A]
 gi|229485767|sp|A9NGN4|GREA_ACHLI RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|161985865|gb|ABX81514.1| transcription elongation factor [Acholeplasma laidlawii PG-8A]
          Length = 158

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 3/156 (1%)

Query: 2   VDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
             K+  +T  G D+++ EL   +  +R   ++A+ EAR  GDLSENA+Y AA+  Q   E
Sbjct: 3   SKKVYELTQSGLDQLKDELTHLKDVKRVENLEALKEAREQGDLSENADYDAARNEQARIE 62

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ E+E+I+   ++I  +      +  G  V L          Y +VG  EAD ++  +
Sbjct: 63  ARILEIESILKNVKII-RTNDDSTTVNIGKKVLLHFVEKNKDVEYHVVGTIEADPKNFKI 121

Query: 121 SISSPIARALIGKELGDIISVN-APGGEKTYEILQV 155
           SI SP+ RA+ GKE+GD++ +  A   +   EI  +
Sbjct: 122 SIESPLGRAIKGKEVGDLVQIKSATNKQSNVEIKAI 157


>gi|251781820|ref|YP_002996122.1| transcription elongation factor GreA [Streptococcus dysgalactiae
           subsp. equisimilis GGS_124]
 gi|242390449|dbj|BAH80908.1| transcription elongation factor [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|322411166|gb|EFY02074.1| transcription elongation factor GreA [Streptococcus dysgalactiae
           subsp. dysgalactiae ATCC 27957]
 gi|323126633|gb|ADX23930.1| transcription elongation factor GreA [Streptococcus dysgalactiae
           subsp. equisimilis ATCC 12394]
          Length = 160

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    +++++EL   +   RP +++ I  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 1   MAEKTYPMTLTEKEQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+ID   ++ D +A G TV + E  + DK  Y IVG   AD+ SG 
Sbjct: 61  EGQISTLETKIRYAEIIDSDAVAKDEVAIGKTVVVQEVGTTDKDTYHIVGAAGADIFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK+ GD + + +P      EI+ V 
Sbjct: 121 ISNESPIAQALIGKKTGDKVRIESPAATYDVEIISVE 157


>gi|322437290|ref|YP_004219502.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX9]
 gi|321165017|gb|ADW70722.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX9]
          Length = 173

 Score =  110 bits (274), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 48/146 (32%), Positives = 88/146 (60%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
            K+ +E++  + E    +   I +A A GDLSENAEY  AK+ Q     R+ +L+  +  
Sbjct: 7   AKLAEEIKALEYELTTELPAEIKKAVALGDLSENAEYHMAKQRQVFVNARLGQLKKRMGE 66

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
             +++++ +  D+  FG+ +++ +    ++  YQ+V  +E+DV  GL+S +SPI RAL+ 
Sbjct: 67  LAMVNLANIPHDKTGFGSRITVFDSTKDEEIVYQLVTSEESDVSKGLISTTSPIGRALLN 126

Query: 133 KELGDIISVNAPGGEKTYEILQVLWI 158
           KE+GD ++V  P G++  E+L++  I
Sbjct: 127 KEVGDTVTVVTPNGKRELEVLKLATI 152


>gi|297157679|gb|ADI07391.1| transcription elongation factor GreA [Streptomyces bingchenggensis
           BCW-1]
          Length = 165

 Score =  110 bits (274), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +D+++ EL +     R  I K I  AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYDQLKAELEYLSGPARVEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +    +G            + +  D   + +   + A       S  SP
Sbjct: 70  LTQLLQHAKVGEAPADTGVVAPGMVVTIAFDGDPDDSLTFLLASREYASSDIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   + GK++G+  S   P G   + +IL+
Sbjct: 130 LGSGVNGKKVGEDASYELPNGRTASVKILE 159


>gi|256851960|ref|ZP_05557347.1| transcription elongation factor GreB [Lactobacillus jensenii
           27-2-CHN]
 gi|260661470|ref|ZP_05862383.1| transcription elongation factor GreB [Lactobacillus jensenii
           115-3-CHN]
 gi|282931733|ref|ZP_06337221.1| transcription elongation factor GreA 1 [Lactobacillus jensenii
           208-1]
 gi|297205169|ref|ZP_06922565.1| transcription elongation factor GreA [Lactobacillus jensenii
           JV-V16]
 gi|256615372|gb|EEU20562.1| transcription elongation factor GreB [Lactobacillus jensenii
           27-2-CHN]
 gi|260547925|gb|EEX23902.1| transcription elongation factor GreB [Lactobacillus jensenii
           115-3-CHN]
 gi|281304176|gb|EFA96290.1| transcription elongation factor GreA 1 [Lactobacillus jensenii
           208-1]
 gi|297149747|gb|EFH30044.1| transcription elongation factor GreA [Lactobacillus jensenii
           JV-V16]
          Length = 153

 Score =  110 bits (274), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 83/149 (55%), Gaps = 3/149 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+  I++E+   ++ +RP  IKA+ EAR+ GDLSEN+EY  AK+     E R+  L
Sbjct: 7   MTPQGYKLIEEEIANLKK-KRPIKIKALQEARSLGDLSENSEYTEAKKELRHLESRLRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  +  AE+I        ++  G  V L  ++      Y+IVG  EA++++G +S  SP+
Sbjct: 66  DKQLKYAEIITP--NDDKKVDLGKKVKLRFEDDETSDTYEIVGRLEANLEAGKISFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
             A++ KE G  ++V AP G     I  V
Sbjct: 124 GAAIMKKEAGTCVTVEAPAGSYEVTIEDV 152


>gi|42518266|ref|NP_964196.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC
           533]
 gi|41582550|gb|AAS08162.1| transcription elongation factor GreA [Lactobacillus johnsonii NCC
           533]
          Length = 153

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 50/149 (33%), Positives = 86/149 (57%), Gaps = 3/149 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   ++ +RPR IK + EAR+ GDLSEN+EY  AK      + R+  L
Sbjct: 7   MTPEGYQEIKDEIARLKK-DRPRRIKILQEARSMGDLSENSEYTTAKMELGHLQSRLRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  +  +E+I         I  G+ V+L+ +   + + Y+IVG  EAD+  G +S  SP+
Sbjct: 66  DKQLRYSEII--QKDESGTIDLGSNVTLLFEGDDEAEEYRIVGRMEADLAKGKISFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
            +AL+ ++ G  ++V AP G    +I+ V
Sbjct: 124 GQALMKQKAGATVTVEAPAGSYDVKIIDV 152


>gi|218282252|ref|ZP_03488551.1| hypothetical protein EUBIFOR_01133 [Eubacterium biforme DSM 3989]
 gi|218216790|gb|EEC90328.1| hypothetical protein EUBIFOR_01133 [Eubacterium biforme DSM 3989]
          Length = 162

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 88/159 (55%), Gaps = 5/159 (3%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K  VT +G++ +  E      + R  +I  + EARA GDLSENA+Y AA+E Q   EGR
Sbjct: 4   EKFYVTQEGYNDLVNEHENLVHKVRQEVIVELQEARAQGDLSENADYDAAREHQAQVEGR 63

Query: 63  MAELENIITRAEVIDIS-----TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
           + ELE +I  AE+I  S         + +  G+TV +++ +   +  + IVG  EAD  +
Sbjct: 64  IRELEAMIKNAEIITESADVEDKKKKNVVKLGSTVKILDLSDNQEVTFNIVGTIEADPFN 123

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           G +S ++P+A  ++  ++GD+ +V         +IL++ 
Sbjct: 124 GKLSNTTPLAEVIMDHKVGDVCTVKRVEEPYDVKILEIK 162


>gi|282854471|ref|ZP_06263808.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Propionibacterium acnes J139]
 gi|282583924|gb|EFB89304.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Propionibacterium acnes J139]
 gi|314922876|gb|EFS86707.1| transcription elongation factor GreA [Propionibacterium acnes
           HL001PA1]
 gi|314980833|gb|EFT24927.1| transcription elongation factor GreA [Propionibacterium acnes
           HL110PA3]
 gi|315090280|gb|EFT62256.1| transcription elongation factor GreA [Propionibacterium acnes
           HL110PA4]
 gi|315103027|gb|EFT75003.1| transcription elongation factor GreA [Propionibacterium acnes
           HL050PA2]
          Length = 168

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 5/159 (3%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D + +T + FDK+ QEL + + E R  I   I++AR+ GDLSEN  Y AA+E Q   E R
Sbjct: 6   DTVWLTQEAFDKLTQELEYLKGEGRTVIANKIADARSEGDLSENGGYHAAREEQGQAEAR 65

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY----QIVGDQEADVQSG 118
           + +LE ++  AEV +  +   + +           +  D   +    + V   +  V   
Sbjct: 66  IRQLEQMLRNAEVGEAPSSPDEVVPGSKVTICYFDDESDTDTFLLGSRQVMGLDDSVNVS 125

Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           + S  SP+  A++G   G+     AP G      IL V 
Sbjct: 126 VYSPQSPLGGAILGHSKGESTEYQAPNGKTIKVTILNVE 164


>gi|160901647|ref|YP_001567228.1| transcription elongation factor GreA [Petrotoga mobilis SJ95]
 gi|189042243|sp|A9BFC0|GREA_PETMO RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|160359291|gb|ABX30905.1| transcription elongation factor GreA [Petrotoga mobilis SJ95]
          Length = 159

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 92/158 (58%), Gaps = 3/158 (1%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +++  +T +G++K+++E    ++     + + I EAR  GDLSEN+EY+ AK  Q + 
Sbjct: 1   MAEQVYQLTREGYEKLKREREELKKRLMGEVAERIKEARELGDLSENSEYEEAKNEQGMI 60

Query: 60  EGRMAELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           + R+ E++ I+  AE+I+         ++ G  V + +     ++ + +V  QEA+++  
Sbjct: 61  DSRIKEIDYILDNAEIIENGGNHDNSTVSLGKKVKIKDYRLNREQEFVLVTPQEANIEEN 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
            +SI SPI R+L+G++ G++I++    G  K  EI ++
Sbjct: 121 KISIESPIGRSLLGRKKGEVINIKTARGSSKKIEIKEI 158


>gi|39938788|ref|NP_950554.1| transcription elongation factor [Onion yellows phytoplasma OY-M]
 gi|39721897|dbj|BAD04387.1| transcription elongation factor [Onion yellows phytoplasma OY-M]
          Length = 170

 Score =  109 bits (273), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 92/158 (58%), Gaps = 4/158 (2%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +KI  +T  G +K+++EL + ++ +R   ++A+ EAR  GDLSENA+Y AA+  Q L 
Sbjct: 15  MNNKIYELTQSGIEKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 74

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R++E++NI+    V+ +S      ++ G  VSL   ++  ++  ++V   EAD  +  
Sbjct: 75  EHRISEIQNILKNVRVVKVSKE--REVSIGKKVSLELLHTKQQQEIELVSTLEADPFNNK 132

Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           +SI SP+ + + G ++GD++ V    G     +I+ V 
Sbjct: 133 ISIESPLGQNIKGHQIGDVVFVTGETGNTFRVKIVDVQ 170


>gi|313837032|gb|EFS74746.1| transcription elongation factor GreA [Propionibacterium acnes
           HL037PA2]
 gi|314929380|gb|EFS93211.1| transcription elongation factor GreA [Propionibacterium acnes
           HL044PA1]
 gi|314971536|gb|EFT15634.1| transcription elongation factor GreA [Propionibacterium acnes
           HL037PA3]
 gi|328907910|gb|EGG27672.1| transcription elongation factor GreA [Propionibacterium sp. P08]
          Length = 168

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 5/159 (3%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D + +T + FDK+ QEL + + + R  I   I++AR+ GDLSEN  Y AA+E Q   E R
Sbjct: 6   DTVWLTQEAFDKLTQELEYLKGKGRTVIANKIADARSEGDLSENGGYHAAREEQGQAEAR 65

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY----QIVGDQEADVQSG 118
           + +LE ++  AEV +  +   + +           +  D   +    + V   +  V   
Sbjct: 66  IRQLEQMLRNAEVGEAPSSPDEVVPGSKVTVCYFDDESDTDIFLLGSRQVMGLDDSVDIS 125

Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           + S  SP+  A++G   G+     AP G      IL V 
Sbjct: 126 VYSPQSPLGGAILGHSKGESTEYKAPNGKTIKVTILDVE 164


>gi|297192437|ref|ZP_06909835.1| transcription elongation factor [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197717974|gb|EDY61882.1| transcription elongation factor [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 165

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +++++ EL +     R  I K I  AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNQLKAELEYLSGPARTEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +     G            + +  D   + +   + A       S  SP
Sbjct: 70  LTQLLDNAKVGEAPADDGVVEPGMVVTIAFDGDEDDTLTFLMASREYASADIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   + GK++GD      P G+K   +IL 
Sbjct: 130 LGVGVNGKKVGDDAEYELPNGKKAAVKILA 159


>gi|254389866|ref|ZP_05005089.1| transcription elongation factor greA [Streptomyces clavuligerus
           ATCC 27064]
 gi|294814692|ref|ZP_06773335.1| Transcription elongation factor [Streptomyces clavuligerus ATCC
           27064]
 gi|326443074|ref|ZP_08217808.1| transcription elongation factor GreA [Streptomyces clavuligerus
           ATCC 27064]
 gi|197703576|gb|EDY49388.1| transcription elongation factor greA [Streptomyces clavuligerus
           ATCC 27064]
 gi|294327291|gb|EFG08934.1| Transcription elongation factor [Streptomyces clavuligerus ATCC
           27064]
          Length = 165

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +++++ EL       R  I K I  AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNQLKAELEHLSGPARVEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +     G            + +  D   + +   + A       S  SP
Sbjct: 70  LTQLLDSAKVGEAPADDGVVEPGMVVTIAFDGDEDDTLTFLMASREYASSNIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   + GK++GD      P G +   +IL 
Sbjct: 130 LGTGVNGKKVGDTAEYELPNGSQAMVKILA 159


>gi|78484860|ref|YP_390785.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2]
 gi|78363146|gb|ABB41111.1| GreA/GreB family elongation factor [Thiomicrospira crunogena XCL-2]
          Length = 154

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 2/154 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T +GF ++ +EL +  + +RP I++AIS A A GD SENAEY   K+     + ++ 
Sbjct: 2   NYITQEGFYRLTEELSFLWKTKRPEIVRAISTAAAEGDRSENAEYIYRKKELRETDRKIR 61

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE  +    V+       D++ FGA V L +++   K+ Y+IVG  EA  +   +S+ S
Sbjct: 62  YLERHLKDINVVRDKPRQRDKVFFGAYVLLEDEDGQQKQ-YRIVGGIEARGEENEISVKS 120

Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
           P+A+ALIGK L   + V  P   +  Y IL + +
Sbjct: 121 PVAQALIGKLLDQDVEVLLPDNRKIHYTILDIKY 154


>gi|297625161|ref|YP_003706595.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM
           17093]
 gi|297166341|gb|ADI16052.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM
           17093]
          Length = 158

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 91/158 (57%), Gaps = 2/158 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  K + +T +G++KI++ELR+  + +R +I + +  A A GDL E+A Y  A+  Q+ N
Sbjct: 1   MTKKPVYLTPQGYEKIKEELRYLVEVKRQQIAENMGTAIADGDLRESAAYDEARMEQSAN 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A+LE I+ RA V++           GA+++L +++      + +VG  EAD+    
Sbjct: 61  EARIADLEEILHRAVVVENQEGELAVARLGASLTLEDESGQQT-TFYLVGTHEADIFENR 119

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +S  SP+ R L+GK +GD +++        Y +++V +
Sbjct: 120 ISDESPLGRELLGKRVGDKVNLALGRTRSEYTVVEVGF 157


>gi|187933763|ref|YP_001884424.1| transcription elongation factor GreA [Clostridium botulinum B str.
           Eklund 17B]
 gi|238691601|sp|B2TI25|GREA_CLOBB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|187721916|gb|ACD23137.1| transcription elongation factor GreA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 160

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 2/158 (1%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  +  +T +G  K++ EL + +  +R  I + I  A  YGDLSEN+EY  AK  Q  
Sbjct: 1   MSEPKQYVMTYEGVKKLEGELEYLKTVKRKEITEKIKVALGYGDLSENSEYDEAKNDQAF 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EG++ +LEN +  A V+D S +  D ++ G+ V + + +  ++  Y IVG  EAD  S 
Sbjct: 61  TEGKILQLENKLKNAVVVDESEIPKDIVSVGSKVKVKDYDFDEEVEYSIVGSAEADPMSF 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+  AL+GK++GD++ V  P G   +EIL + 
Sbjct: 121 KISNESPVGNALVGKKIGDVVEVVVPDGVSKFEILDIK 158


>gi|320008884|gb|ADW03734.1| transcription elongation factor GreA [Streptomyces flavogriseus
           ATCC 33331]
          Length = 165

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +++++ EL +     R  I   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTPEAYNQLKAELEYLSGPARTEISVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +     G            + +  D   + +   + A       S  SP
Sbjct: 70  LTQLLEHAKVGEAPADDGVVEPGMVVTIAFDGDPDDTVTFLLASREYASADIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   + GK  GD      P G+K T +I+ 
Sbjct: 130 LGTGVNGKRTGDEAEYELPNGKKATVKIVS 159


>gi|322386974|ref|ZP_08060598.1| transcription elongation factor GreA [Streptococcus cristatus ATCC
           51100]
 gi|321269256|gb|EFX52192.1| transcription elongation factor GreA [Streptococcus cristatus ATCC
           51100]
          Length = 187

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    +K++QEL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 28  MAEKTYPMTLVEKEKLEQELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 87

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  A ++D  +++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 88  EGQISSLETKIRYAVIVDSDSVAKDEVAIGKTVTIQEVGETEEEVYIIVGSAGADAFAGK 147

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GDI +V  P G    +IL+V 
Sbjct: 148 VSNESPIGQALIGKKTGDIATVETPVGSYDVKILKVE 184


>gi|195978755|ref|YP_002123999.1| transcription elongation factor GreA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225867928|ref|YP_002743876.1| transcription elongation factor [Streptococcus equi subsp.
           zooepidemicus]
 gi|225871158|ref|YP_002747105.1| transcription elongation factor [Streptococcus equi subsp. equi
           4047]
 gi|195975460|gb|ACG62986.1| transcription elongation factor GreA [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|225700562|emb|CAW95060.1| transcription elongation factor [Streptococcus equi subsp. equi
           4047]
 gi|225701204|emb|CAW98132.1| transcription elongation factor [Streptococcus equi subsp.
           zooepidemicus]
          Length = 176

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 1/156 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T+   +++++EL   +   RP +++ I  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 17  MAEKTYPMTAAEKEQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 76

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+ID   ++ D +A G TV + E  +     Y IVG   AD+ SG 
Sbjct: 77  EGQISTLETKIRYAEIIDSDAVAKDEVAIGKTVVVQEVGTQTTDTYHIVGAAGADIFSGK 136

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S  SPIA+ALIGK+ GD + + +P       I+ V
Sbjct: 137 ISNESPIAQALIGKKTGDKVKIESPAATYEVTIISV 172


>gi|302536479|ref|ZP_07288821.1| transcription elongation factor greA [Streptomyces sp. C]
 gi|302445374|gb|EFL17190.1| transcription elongation factor greA [Streptomyces sp. C]
          Length = 165

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T   +D+++ EL +     R  I   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQAAYDQLKAELDYLSGPARTEIAMKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V      SG+           + +  D   + +   + A       S  SP
Sbjct: 70  LTQLLENAKVGTAPAASGEVAPGTLVTIAFDGDEDDTLEFLLASREYASDDFETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVL 156
           +   + GK++G+      P G+K T  IL V 
Sbjct: 130 LGAGVNGKKVGEDAQYELPNGKKATVRILAVK 161


>gi|15829024|ref|NP_326384.1| transcription elongation factor GreA [Mycoplasma pulmonis UAB CTIP]
 gi|14089968|emb|CAC13726.1| TRANSCRIPTION ELONGATION FACTOR GREA (TRANSCRIPT CLEAVAGE FACTOR
           GREA) [Mycoplasma pulmonis]
          Length = 164

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 59/153 (38%), Positives = 92/153 (60%), Gaps = 3/153 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KI +T +   K ++E       ERP +I  I EAR  GDLSENAEY AA+E Q   E R
Sbjct: 12  NKIYLTQETIKKYEEEKWHLINVERPAVILEIKEARQQGDLSENAEYDAAREKQGQIEDR 71

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELENI++ A  I  S    D+I  G+ V ++ +++G ++ ++IVG  + D     +S 
Sbjct: 72  ITELENILSNAISIQESHS--DKIGLGSVVRILNQSTGKERTFKIVGSFDTDPTQNKISY 129

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SP+A+++IG   GD++ ++AP  + T +IL V
Sbjct: 130 ESPLAKSIIGFSKGDVVEIDAPD-KYTTKILSV 161


>gi|188590574|ref|YP_001920968.1| transcription elongation factor GreA [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188500855|gb|ACD53991.1| transcription elongation factor GreA [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 155

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 82/151 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +   K+Q+EL +R   +R  I K    A A+GD SENAEY+ A      N+ R+  L
Sbjct: 5   LTEENMKKLQEELEYRLTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
             +I+ A VID + +    +   +   +      D+    +V   + D ++ L+SI S +
Sbjct: 65  MTMISTATVIDDTEIDKSSLGINSKARIKFVEDDDEDVITLVTTMDLDPENMLISIESDL 124

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +AL+GK+ G+ + V APG + T +IL++L+
Sbjct: 125 GKALMGKKAGETVEVEAPGAKYTVKILEILY 155


>gi|117929094|ref|YP_873645.1| transcription elongation factor GreA [Acidothermus cellulolyticus
           11B]
 gi|117649557|gb|ABK53659.1| transcription elongation factor GreA [Acidothermus cellulolyticus
           11B]
          Length = 162

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/157 (27%), Positives = 68/157 (43%), Gaps = 6/157 (3%)

Query: 1   MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M +      +T + ++++  E        R  I + I  ARA GDL EN  Y AAKE Q 
Sbjct: 1   MSETPTVTWLTQEAYERLTAEYNHLIGPARAEIARKIEAARAEGDLRENGGYHAAKEEQG 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
             E R+ +L  I+  A+V +     G        V  V    G++  + +   +E+    
Sbjct: 61  KMEARIRQLRQILENAKVGEPPADDGVVEP--GMVVTVRYEDGEELTFLLGSREESAAGI 118

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEIL 153
              S +SP+  AL+GK +GD  S   P G      ++
Sbjct: 119 EAFSPNSPLGSALLGKRVGDSASYTLPTGATMRVTVV 155


>gi|238855578|ref|ZP_04645880.1| transcription elongation factor GreA [Lactobacillus jensenii 269-3]
 gi|260664770|ref|ZP_05865621.1| transcription elongation factor GreB [Lactobacillus jensenii
           SJ-7A-US]
 gi|282932736|ref|ZP_06338144.1| transcription elongation factor GreA 1 [Lactobacillus jensenii
           208-1]
 gi|238831795|gb|EEQ24130.1| transcription elongation factor GreA [Lactobacillus jensenii 269-3]
 gi|260561253|gb|EEX27226.1| transcription elongation factor GreB [Lactobacillus jensenii
           SJ-7A-US]
 gi|281303146|gb|EFA95340.1| transcription elongation factor GreA 1 [Lactobacillus jensenii
           208-1]
          Length = 153

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 3/149 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+  I++E++  ++  RP  IKA+ EAR+ GDLSEN+EY  AK+     E R+  L
Sbjct: 7   MTPQGYKLIEEEIKNLKKS-RPIKIKALQEARSLGDLSENSEYTEAKKELRHLESRLRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  +  AE+I        ++  G  V L  ++      Y+IVG  EAD+++G +S  SP+
Sbjct: 66  DKQLKYAEIITP--NDDKKVDLGKKVKLRFEDDETSDTYEIVGRLEADLEAGKISFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
             A++ KE G  ++V AP G     I +V
Sbjct: 124 GVAIMKKEAGSCVTVEAPAGSYEVTIEEV 152


>gi|284113334|ref|ZP_06386608.1| transcription elongation factor GreA [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283829659|gb|EFC33987.1| transcription elongation factor GreA [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 132

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/130 (44%), Positives = 90/130 (69%)

Query: 28  PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
           P+ I+ I+EAR +GDL ENAE++AAKE Q   + RM+E+E+ +  A+VI+  T   + + 
Sbjct: 1   PQNIQDIAEAREHGDLRENAEFKAAKERQQFIDTRMSEIEHKLGDAQVIESGTGPSETVV 60

Query: 88  FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
           FGATV L++  S ++K Y +VG +EAD+++G +S+ SPI RALI   +GD++ VN P G 
Sbjct: 61  FGATVRLLDVESEEQKTYTLVGQEEADLKNGSISVQSPIGRALISHRVGDVVQVNRPAGM 120

Query: 148 KTYEILQVLW 157
             YEI ++ +
Sbjct: 121 IEYEIQEIFF 130


>gi|254381990|ref|ZP_04997353.1| transcription elongation factor greA [Streptomyces sp. Mg1]
 gi|194340898|gb|EDX21864.1| transcription elongation factor greA [Streptomyces sp. Mg1]
          Length = 165

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 1/152 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T   +D+++ EL +     R  I   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQAAYDQLKAELDYLSGPARTEIATKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V       G            + +  D   + +   + A  +    S  SP
Sbjct: 70  LTQLLENAKVGTAPASDGVVAPGTLVKIAFDGDEDDTMEFLLASREYASSEFETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVL 156
           +   ++ K++G+      P G+K T +IL V 
Sbjct: 130 LGSGVLNKKIGEDAEYELPNGKKATVKILDVK 161


>gi|152002554|dbj|BAF73578.1| transcription elongation factor [Onion yellows phytoplasma OY-W]
          Length = 170

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 92/158 (58%), Gaps = 4/158 (2%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +KI  +T  G +K+++EL + ++ +R   ++A+ EAR  GDLSENA+Y AA+  Q L 
Sbjct: 15  MNNKIYELTQSGIEKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 74

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R++E++NI+    V+ +S      ++ G  VSL   ++  ++  ++V   EAD  +  
Sbjct: 75  EHRISEIQNILKNVRVVKVSKE--REVSIGKKVSLELLHTKQQQEIELVSTLEADPFTNK 132

Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           +SI SP+ + + G ++GD++ V    G     +I+ V 
Sbjct: 133 ISIESPLGKNIKGHQIGDVVFVTGETGNTFRVKIVDVQ 170


>gi|313890846|ref|ZP_07824470.1| transcription elongation factor GreA [Streptococcus pseudoporcinus
           SPIN 20026]
 gi|313120744|gb|EFR43859.1| transcription elongation factor GreA [Streptococcus pseudoporcinus
           SPIN 20026]
          Length = 160

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    +++++EL   +   RP +++ I  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 1   MAEKTYPMTELEKEQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+ID   ++ D +A G TV + E  + DK  Y IVG   AD+ SG 
Sbjct: 61  EGQISTLETKIRFAEIIDSDAVAKDEVAIGKTVVVQEVGTNDKDTYHIVGSAGADIFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK+ GD   + +P      EI+ V 
Sbjct: 121 ISNESPIAQALIGKKKGDKAQIVSPATTYEVEIVSVE 157


>gi|256372307|ref|YP_003110131.1| GreA/GreB family elongation factor [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256008891|gb|ACU54458.1| GreA/GreB family elongation factor [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 160

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 1/154 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + ++ ++   +D + QEL     + R  I KAI  ARA GDLSEN +Y AAK+ Q   E 
Sbjct: 1   MSEVEISQATYDALVQELEELTTQGRIEIAKAIEAARALGDLSENGDYHAAKDAQGKMEA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +++ I+  A V+     + +    G  V L  +   D ++Y +   +E      +VS
Sbjct: 61  RIRQIQQILQSARVVSADLPTDEV-RPGVVVGLRYEGEDDVEHYLVGSIEERHPGLEVVS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +SP+  AL+G  +G  +   AP G    +++++
Sbjct: 120 PTSPLGEALLGARVGAWVEYEAPRGTLKVQVVEI 153


>gi|298242601|ref|ZP_06966408.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM
           44963]
 gi|297555655|gb|EFH89519.1| GreA/GreB family elongation factor [Ktedonobacter racemifer DSM
           44963]
          Length = 154

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 3/152 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           + +T+ G  +   +L   + E R ++ + + +A+  GD+ +NA Y  AK+ Q L E R+ 
Sbjct: 6   VFLTNDGLQRALSQLDNLRTEGRAKVAQYLHDAKESGDVIDNAAYDDAKKEQALLESRIL 65

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE+++TRA++I+ +      +    ++  +  + G    Y IVG  EA   +G +S  S
Sbjct: 66  ELEHLVTRAKLINNARTDEVSL---GSIVHLRSSEGRDYCYTIVGAFEASPSAGRISNES 122

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+ RAL+G + GD + V+ PGG K Y I ++ 
Sbjct: 123 PVGRALLGHKAGDHVIVSTPGGVKEYTISRIE 154


>gi|239929251|ref|ZP_04686204.1| transcription elongation factor GreA [Streptomyces ghanaensis ATCC
           14672]
 gi|291437589|ref|ZP_06576979.1| transcription elongation factor greA [Streptomyces ghanaensis ATCC
           14672]
 gi|291340484|gb|EFE67440.1| transcription elongation factor greA [Streptomyces ghanaensis ATCC
           14672]
          Length = 165

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + ++K++ EL +     R  I   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNKLKDELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +     G            + +  D   + +   + A  +    S  SP
Sbjct: 70  LTQLLENAKVGEAPAADGTVAPGMVVTIAFDGDEDDTLTFLLASREYASSEIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   +IG+++G+      P G+  + +IL+
Sbjct: 130 LGTGVIGRKVGENAEYELPNGKTASVKILK 159


>gi|307324420|ref|ZP_07603628.1| GreA/GreB family elongation factor [Streptomyces violaceusniger Tu
           4113]
 gi|306890151|gb|EFN21129.1| GreA/GreB family elongation factor [Streptomyces violaceusniger Tu
           4113]
          Length = 165

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +D+++ EL +     R  I K I  AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYDQLKAELEYLSGPARVEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++ +A+V +    +G            + +  D   + +   + A       S  SP
Sbjct: 70  LTQLLQQAKVGEAPADTGVVAPGMVVTIAFDGDPDDTLTFLLASREYASANIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   + GK++G       P G   +  IL+
Sbjct: 130 LGSGVNGKKVGQDAEYELPNGRTASVRILE 159


>gi|221632874|ref|YP_002522096.1| transcription elongation factor greA [Thermomicrobium roseum DSM
           5159]
 gi|221156489|gb|ACM05616.1| transcription elongation factor greA [Thermomicrobium roseum DSM
           5159]
          Length = 156

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 93/158 (58%), Gaps = 4/158 (2%)

Query: 1   MVDKIPV--TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           MV + P+  T +G   ++QEL   +Q + P +++ + +    GD+S+N+EY+  KE   L
Sbjct: 1   MVRERPIVLTPEGKAALEQELEHLRQHKLPLLLERLQQLSNEGDISDNSEYEDTKEELVL 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ E+E+I+ RA++I  +    +    G+ V+++++    +  + IV  +EA+   G
Sbjct: 61  TEARIREIEHILRRAQMITRAGPQDEV-RLGSRVTVIDEEGSVE-TWVIVSPEEANAAQG 118

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +SI SP+  AL+GK +G  ++V APGGE  + I ++ 
Sbjct: 119 RISIESPVGAALLGKRVGTTVTVRAPGGEMRFTIQRIE 156


>gi|171463505|ref|YP_001797618.1| transcription elongation factor GreB [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193043|gb|ACB44004.1| transcription elongation factor GreB [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 168

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 8/166 (4%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +K  +T  G+++I+ EL      +R  ++K +  A + GD SEN +Y   K+     +
Sbjct: 1   MEEKNYITLAGYERIKTELLQLLNLDRLEVVKVVHWAASNGDRSENGDYIYGKKRLREID 60

Query: 61  GRMAELENIITRAEVIDIS-----TMSGDRIAFGATVSLVE---KNSGDKKNYQIVGDQE 112
            R+  L   +  A V+D S         D++ FGA+V+        +G + +  IVG  E
Sbjct: 61  RRIRFLNKRLEFAIVVDNSARKSGENDADQVFFGASVTYSALEGPEAGKRTSITIVGVDE 120

Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            D+    VS  SPIA+ALI   +GD + +  P G    EIL V ++
Sbjct: 121 VDLDKSHVSWVSPIAKALIKSRIGDCVFIQTPTGPTEIEILDVQYL 166


>gi|322804996|emb|CBZ02556.1| transcription elongation factor GreA [Clostridium botulinum H04402
           065]
          Length = 154

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 84/152 (55%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +  +K+++EL +R  ++R  I K   EA A+GD SENAEY+ A      N+ R+
Sbjct: 2   KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L  +I+ A VID        +   +   +       + N  +V   +A+ +  L+S+ 
Sbjct: 62  QYLLTMISTASVIDEKNQDKSVLGVNSKCKIKFVEDEFETNVSLVTTMDAEPEKMLISVE 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S + +AL+GK++GD+  V+APG + T E+L++
Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVLEI 153


>gi|197294551|ref|YP_001799092.1| transcription elongation factor GreA [Candidatus Phytoplasma
           australiense]
 gi|171853878|emb|CAM11840.1| Transcription elongation factor [Candidatus Phytoplasma
           australiense]
          Length = 156

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 4/158 (2%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +KI  +T  G  K+++EL + ++ +R   ++A+ EAR  GDLSENA+Y AA+  Q L 
Sbjct: 1   MKNKIYELTQPGILKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ E++NI+    V+ +S      I  G  VSL   NSG ++ +++V   E+D  S  
Sbjct: 61  EYRITEIQNILKNVRVVKVSKD--KEINIGKKVSLKMLNSGTEEEFELVSTLESDPFSNK 118

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
           +SI SP+ + + G E+GD++ + +  G K   +IL V 
Sbjct: 119 ISIESPLGKKIKGHEIGDVVFITSETGTKFKVKILDVK 156


>gi|94993684|ref|YP_601782.1| transcription elongation factor GreA [Streptococcus pyogenes
           MGAS10750]
 gi|94547192|gb|ABF37238.1| Transcription elongation factor greA [Streptococcus pyogenes
           MGAS10750]
          Length = 176

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    +++++EL   +   RP I++ I  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 17  MAEKTYPMTLTEKEQLEKELEELKLVRRPEIVERIKIARSYGDLSENSEYDAAKDEQAFV 76

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+ID   ++ D +A G TV + E  + DK  Y IVG   AD+ SG 
Sbjct: 77  EGQISTLETKIRYAEIIDSDAVAKDEVAIGKTVIVHEVGTTDKDTYHIVGAAGADIFSGK 136

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK+ GD + + +P      EI+ V 
Sbjct: 137 ISNESPIAQALIGKKTGDKVRIESPAATYDVEIISVE 173


>gi|314966306|gb|EFT10405.1| transcription elongation factor GreA [Propionibacterium acnes
           HL082PA2]
 gi|315093472|gb|EFT65448.1| transcription elongation factor GreA [Propionibacterium acnes
           HL060PA1]
 gi|327327087|gb|EGE68868.1| transcription elongation factor GreA [Propionibacterium acnes
           HL103PA1]
          Length = 168

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 5/159 (3%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D + +T + FDK+ QEL + + E R  I   I++AR+ GDLSEN  YQAA+E Q   E R
Sbjct: 6   DTVWLTQEAFDKLTQELEYLKGEGRTVIANKIADARSEGDLSENGGYQAAREEQGQAEAR 65

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY----QIVGDQEADVQSG 118
           + +LE ++  AEV +  +   + +           +  D   +    + V   +  V   
Sbjct: 66  IRQLEQMLRNAEVGEAPSSPDEVVPGSKVTICYFDDESDTDTFLLGSRQVMGLDDSVNVS 125

Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           + S  SP+  A++G   G+     AP G      IL V 
Sbjct: 126 VYSPQSPLGGAILGHSKGESTEYQAPNGKTIKVTILNVE 164


>gi|226355589|ref|YP_002785329.1| transcription elongation factor [Deinococcus deserti VCD115]
 gi|226317579|gb|ACO45575.1| putative transcription elongation factor [Deinococcus deserti
           VCD115]
          Length = 156

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 4/158 (2%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M    P +T +G+DK+++ L   +   R +I + + +A A GDL E+A Y  A+  Q+ N
Sbjct: 1   MTKPRPTMTQRGYDKLKETLDHLKTTRREQISEYMGQAIADGDLRESAAYDEARMQQSEN 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+A++E  +  A +I   +  G  +     V     + G +  +++VG  E D+  G 
Sbjct: 61  EARIADIEYQLEHALIIAEDSAGGAGLGARIRVKD---DKGKEHQFELVGTYEVDILKGK 117

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +S +SPI +AL GK  G+ ++V  P G   +EIL V +
Sbjct: 118 ISDASPIGKALAGKHAGETVNVQLPKGTSRFEILAVEY 155


>gi|271969724|ref|YP_003343920.1| GreA/GreB family elongation factor [Streptosporangium roseum DSM
           43021]
 gi|270512899|gb|ACZ91177.1| GreA/GreB family elongation factor [Streptosporangium roseum DSM
           43021]
          Length = 166

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +D+++ E  +     R  I K I  AR  GDL EN  Y AAK+ Q   E R+  
Sbjct: 11  WLTQEAYDRLKAEFEYLSGPGRVDIAKKIEAAREEGDLKENGGYHAAKDEQGKMEARIFH 70

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  II  A V +        +  G TV++  +   ++  + +   +E+     + S  SP
Sbjct: 71  LRQIIDSARVGEAPRTE-GVVGPGMTVTVRFEGDDEEVAFLLASREESGAPIDVYSPKSP 129

Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQ-VLWI 158
           +  A+ GK++G+  +   P G     EIL+ V +I
Sbjct: 130 LGSAINGKKIGEKATYTMPNGRSNTVEILEAVPYI 164


>gi|21909791|ref|NP_664059.1| transcription elongation factor GreA [Streptococcus pyogenes
           MGAS315]
 gi|139474369|ref|YP_001129085.1| transcription elongation factor GreA [Streptococcus pyogenes str.
           Manfredo]
 gi|54037221|sp|P64286|GREA_STRP3 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|54037222|sp|P64287|GREA_STRP8 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|54041331|sp|P64285|GREA_STRP1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|73919710|sp|Q5XDQ7|GREA_STRP6 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|166200973|sp|A2RGA4|GREA_STRPG RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|21903976|gb|AAM78862.1| putative transcription elongation factor [Streptococcus pyogenes
           MGAS315]
 gi|134272616|emb|CAM30883.1| transcription elongation factor [Streptococcus pyogenes str.
           Manfredo]
          Length = 160

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    +++++EL   +   RP I++ I  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 1   MAEKTYPMTLTEKEQLEKELEELKLVRRPEIVERIKIARSYGDLSENSEYDAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+ID   ++ D +A G TV + E  + DK  Y IVG   AD+ SG 
Sbjct: 61  EGQISTLETKIRYAEIIDSDAVAKDEVAIGKTVIVQEVGTTDKDTYHIVGAAGADIFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK+ GD + + +P      EI+ V 
Sbjct: 121 ISNESPIAQALIGKKTGDKVRIESPAATYDVEIISVE 157


>gi|84497875|ref|ZP_00996672.1| putative transcription elongation factor [Janibacter sp. HTCC2649]
 gi|84381375|gb|EAP97258.1| putative transcription elongation factor [Janibacter sp. HTCC2649]
          Length = 162

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 6/151 (3%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + FD+++ EL       R  I+  I  AR  GDL EN  Y AA+E Q  NE R+ +
Sbjct: 10  YLTQEAFDRLKAELEELSGPGRADIVAKIEAAREEGDLKENGGYHAAREEQGKNEARIRQ 69

Query: 66  LENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           L  ++  A + +              TV +     GD++ + +   + AD    + S  S
Sbjct: 70  LTQLLENAIIGETPPDDGIVEPGMLVTVEI----FGDEETFLLGSREIADGSLQVYSEQS 125

Query: 125 PIARALIGKELGDIISVNAPGGE-KTYEILQ 154
           PI  A+ GK+ GD ++  AP G+    +IL 
Sbjct: 126 PIGSAVNGKKAGDSVTYEAPNGKQIDVKILS 156


>gi|187250809|ref|YP_001875291.1| transcription elongation factor [Elusimicrobium minutum Pei191]
 gi|186970969|gb|ACC97954.1| Transcription elongation factor [Elusimicrobium minutum Pei191]
          Length = 156

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/156 (28%), Positives = 90/156 (57%), Gaps = 1/156 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K  ++ K ++K++++L   ++ +  ++   I EA   GDL ENAEY AAK  Q     
Sbjct: 1   MEKYYLSRKNYEKLREDLTALKEIK-AKLSLEIGEAAQQGDLRENAEYAAAKSRQEETLV 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++ +LE  +  A++ D   +       GATV++ + ++     Y +VG  E++ + GL+S
Sbjct: 60  KIQDLEQKLRNAQITDDIQVDKSEARIGATVTVHDISADIDFTYTLVGSMESNPEKGLLS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + SP+A +++GK+ G+      P G+K Y+++++ +
Sbjct: 120 VQSPLAVSILGKKEGEEFEAVLPKGKKMYKLVKLEY 155


>gi|323340754|ref|ZP_08081006.1| transcription elongation factor GreA [Lactobacillus ruminis ATCC
           25644]
 gi|323091877|gb|EFZ34497.1| transcription elongation factor GreA [Lactobacillus ruminis ATCC
           25644]
          Length = 157

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 62/158 (39%), Positives = 104/158 (65%), Gaps = 3/158 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++   P+T +G +K+++EL   +  +R  II+ I  AR++GDLSEN+EY+AAK  Q++
Sbjct: 1   MAEEKTFPMTLEGKEKLEKELEELKTTKRAEIIERIKIARSFGDLSENSEYEAAKNEQSI 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ E+ N++  AE+ID   ++ D +A G TV+  E++   +  YQIVG  E+D  +G
Sbjct: 61  LEGRIKEVTNMLNHAEIIDNGAIAEDEVAIGKTVTFQEEDDEPE-TYQIVGAAESDPFNG 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SPIA+ L+G ++G+ ++V  PGG+   +I+ V 
Sbjct: 120 KISNESPIAKGLVGHKVGETVTVETPGGDMQVKIISVE 157


>gi|115374183|ref|ZP_01461470.1| transcription elongation factor GreB [Stigmatella aurantiaca
           DW4/3-1]
 gi|115368850|gb|EAU67798.1| transcription elongation factor GreB [Stigmatella aurantiaca
           DW4/3-1]
          Length = 144

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 2/143 (1%)

Query: 17  QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
           +EL      ERP++   +S A A GD SENAEY   K+     + R+  L+  +  A ++
Sbjct: 3   RELLRLLNVERPKVTAEVSAAAAQGDRSENAEYIYGKKRLREIDRRIRFLQKRLDTATIV 62

Query: 77  DISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135
             +  +   R+ FGATV+L +++      YQIVG  E D Q G +S+ SPI +AL+ K +
Sbjct: 63  TPAEQTDQGRVYFGATVTLEDEDGVQT-TYQIVGSDEIDTQGGRISVESPIGKALLRKAV 121

Query: 136 GDIISVNAPGGEKTYEILQVLWI 158
           GD + V  P GE    I+ + ++
Sbjct: 122 GDSVEVMRPRGEIELTIVAIAYM 144


>gi|85057700|ref|YP_456616.1| transcription elongation factor GreA [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789805|gb|ABC65537.1| transcription elongation factor GreA [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 156

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 93/158 (58%), Gaps = 4/158 (2%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +KI  +T  G +K+++EL + ++ +R   ++A+ EAR  GDLSENA+Y AA+  Q L 
Sbjct: 1   MNNKIYELTQTGIEKLKKELTFLKEVKRKENLEALKEAREQGDLSENADYDAARNEQALI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R++E++NI+    V+ +S      ++ G  VSL   ++  ++  ++V   EAD  +  
Sbjct: 61  EHRISEIQNILKNVRVVKVSKE--REVSIGKKVSLELLHTKQQQEIELVSTLEADPFTNK 118

Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           +SI SP+ + + G ++GDI+ V +  G     +I+ V 
Sbjct: 119 ISIESPLGQNIKGHQIGDIVFVTSETGNTFRVKIVDVQ 156


>gi|251779859|ref|ZP_04822779.1| transcription elongation factor GreA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|243084174|gb|EES50064.1| transcription elongation factor GreA [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 155

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 82/151 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +   K+Q+EL +R   +R  I K    A A+GD SENAEY+ A      N+ R+  L
Sbjct: 5   LTEENMKKLQEELEYRLTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
             +I+ A VID + +    +   +   +      D+    +V   + D ++ L+SI S +
Sbjct: 65  MTMISTATVIDDTEIDKSTLGINSKARIKFVEDDDEDVITLVTTMDLDPENMLISIESDL 124

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +AL+GK+ G+ + V APG + T +IL++L+
Sbjct: 125 GKALMGKKAGETVEVEAPGAKYTVQILEILY 155


>gi|196231612|ref|ZP_03130470.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
 gi|196224465|gb|EDY18977.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
          Length = 609

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 79/147 (53%)

Query: 10  KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
           +  +K + E      ++ P  +K I  AR+YGDL EN E++AAKE+Q +   R AE E  
Sbjct: 459 ESMEKKKAEYDDLVNKKIPENVKEIQVARSYGDLRENFEFKAAKEMQRVLSRRRAETERD 518

Query: 70  ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
           + +A   D +     +++ G  V+L E   G    Y I+G  + D   G+VS  S +A+A
Sbjct: 519 LAQARGTDFANPDTAQVSVGTIVTLKETGDGRTDVYTILGAWDGDPDKGIVSYQSALAQA 578

Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156
           LIG + G+ ++V    G++T  I ++ 
Sbjct: 579 LIGHKPGEQVNVPTEHGDRTARIEKIE 605


>gi|325474603|gb|EGC77789.1| transcription elongation factor [Treponema denticola F0402]
          Length = 901

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 82/149 (55%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VT+K  D   +EL   +  + P+  K I  A + GDL ENAEY+AAKE Q      +  L
Sbjct: 747 VTAKMLDLKNKELIEIRDVKIPQNAKDIGFALSLGDLRENAEYKAAKEEQTRLGNALTRL 806

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           ++ + RA++ D +T +  ++ FG+ V ++   +  ++ Y I+G  E+D  +G++S  SP+
Sbjct: 807 QDELDRAQIFDPTTATAKKVYFGSKVKILNNLTNQEEEYTILGPWESDPANGIISYMSPL 866

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
              L   + G+ +       +++Y+I+ +
Sbjct: 867 GNGLFNHKKGEEVEFEVNDEKRSYKIIDI 895


>gi|42528195|ref|NP_973293.1| transcript cleavage factor/unknown domain fusion protein [Treponema
           denticola ATCC 35405]
 gi|41819465|gb|AAS13212.1| transcription elongation protein, GreA/GreB family [Treponema
           denticola ATCC 35405]
          Length = 901

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 82/149 (55%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VT+K  D   +EL   +  + P+  K I  A + GDL ENAEY+AAKE Q      +  L
Sbjct: 747 VTAKMLDLKNKELIEIRDVKIPQNAKDIGFALSLGDLRENAEYKAAKEEQTRLGNALTRL 806

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           ++ + RA++ D +T +  ++ FG+ V ++   +  ++ Y I+G  E+D  +G++S  SP+
Sbjct: 807 QDELDRAQIFDPTTATAKKVYFGSKVKILNNLTNQEEEYTILGPWESDPANGIISYMSPL 866

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
              L   + G+ +       +++Y+I+ +
Sbjct: 867 GNGLFNHKKGEEVEFEVNDEKRSYKIIDI 895


>gi|15674504|ref|NP_268678.1| transcription elongation factor GreA [Streptococcus pyogenes M1
           GAS]
 gi|19745512|ref|NP_606648.1| transcription elongation factor GreA [Streptococcus pyogenes
           MGAS8232]
 gi|28896516|ref|NP_802866.1| transcription elongation factor GreA [Streptococcus pyogenes SSI-1]
 gi|50913667|ref|YP_059639.1| transcription elongation factor GreA [Streptococcus pyogenes
           MGAS10394]
 gi|56808752|ref|ZP_00366470.1| COG0782: Transcription elongation factor [Streptococcus pyogenes
           M49 591]
 gi|71902951|ref|YP_279754.1| transcription elongation factor GreA [Streptococcus pyogenes
           MGAS6180]
 gi|71910107|ref|YP_281657.1| transcription elongation factor GreA [Streptococcus pyogenes
           MGAS5005]
 gi|94987924|ref|YP_596025.1| transcription elongation factor GreA [Streptococcus pyogenes
           MGAS9429]
 gi|94989799|ref|YP_597899.1| transcription elongation factor GreA [Streptococcus pyogenes
           MGAS10270]
 gi|94991808|ref|YP_599907.1| transcription elongation factor GreA [Streptococcus pyogenes
           MGAS2096]
 gi|209558851|ref|YP_002285323.1| transcription elongation factor GreA [Streptococcus pyogenes NZ131]
 gi|306827965|ref|ZP_07461232.1| transcription elongation factor GreA [Streptococcus pyogenes ATCC
           10782]
 gi|13621606|gb|AAK33399.1| putative transcription elongation factor [Streptococcus pyogenes M1
           GAS]
 gi|19747630|gb|AAL97147.1| putative transcription elongation factor [Streptococcus pyogenes
           MGAS8232]
 gi|28811770|dbj|BAC64699.1| putative transcription elongation factor [Streptococcus pyogenes
           SSI-1]
 gi|50902741|gb|AAT86456.1| Transcription elongation factor [Streptococcus pyogenes MGAS10394]
 gi|71802046|gb|AAX71399.1| transcription elongation factor [Streptococcus pyogenes MGAS6180]
 gi|71852889|gb|AAZ50912.1| transcription elongation factor [Streptococcus pyogenes MGAS5005]
 gi|94541432|gb|ABF31481.1| transcription elongation factor [Streptococcus pyogenes MGAS9429]
 gi|94543307|gb|ABF33355.1| Transcription elongation factor greA [Streptococcus pyogenes
           MGAS10270]
 gi|94545316|gb|ABF35363.1| Transcription elongation factor greA [Streptococcus pyogenes
           MGAS2096]
 gi|209540052|gb|ACI60628.1| Transcription elongation factor GreA [Streptococcus pyogenes NZ131]
 gi|304429884|gb|EFM32926.1| transcription elongation factor GreA [Streptococcus pyogenes ATCC
           10782]
          Length = 176

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    +++++EL   +   RP I++ I  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 17  MAEKTYPMTLTEKEQLEKELEELKLVRRPEIVERIKIARSYGDLSENSEYDAAKDEQAFV 76

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+ID   ++ D +A G TV + E  + DK  Y IVG   AD+ SG 
Sbjct: 77  EGQISTLETKIRYAEIIDSDAVAKDEVAIGKTVIVQEVGTTDKDTYHIVGAAGADIFSGK 136

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK+ GD + + +P      EI+ V 
Sbjct: 137 ISNESPIAQALIGKKTGDKVRIESPAATYDVEIISVE 173


>gi|94967583|ref|YP_589631.1| GreA/GreB family elongation factor [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549633|gb|ABF39557.1| GreA/GreB family elongation factor [Candidatus Koribacter
           versatilis Ellin345]
          Length = 156

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 90/152 (59%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T     K+QQE+   + E +  +   + +A A GDLSENAEY  AK+ Q     R+ ++
Sbjct: 1   MTDHIRQKLQQEIEVLEHELQHELPAELKKAVAMGDLSENAEYHMAKQRQEFVRARLGQM 60

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  +    +++++ +  DR A G+T+ + +    +K +Y++V  +E+DV  GL+S +SPI
Sbjct: 61  KRRMAELSLVNMANIPKDRAAIGSTLKVHDLTKDEKIDYKLVTSEESDVSKGLISTTSPI 120

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            RAL+ K  GD++ V  P G++  EIL++  I
Sbjct: 121 GRALLNKREGDVVEVVTPAGKRELEILKLTTI 152


>gi|315129891|gb|EFT85881.1| elongation factor GreA [Staphylococcus aureus subsp. aureus CGS03]
          Length = 158

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/155 (36%), Positives = 98/155 (63%), Gaps = 2/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            + P+T +GF+K+++EL   +  +RP +++ I  AR++GDLSEN+EY AAK+ Q   E  
Sbjct: 5   KQYPMTQEGFEKLERELEELKTVKRPEVVEKIKVARSFGDLSENSEYDAAKDEQGFIEQD 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  +E+++  A +I+ +  + + +  G TV+ VE    ++++YQIVG  E+D  +G +S 
Sbjct: 65  IQRIEHMLRNALIIEDTGDN-NVVKIGKTVTFVELPGDEEESYQIVGSAESDAFNGKISN 123

Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
            SP+A+ALI K L D + V  P GGE   +I+ + 
Sbjct: 124 ESPMAKALIDKGLDDEVRVPLPNGGEMNVKIVNIQ 158


>gi|168178054|ref|ZP_02612718.1| transcription elongation factor GreA [Clostridium botulinum NCTC
           2916]
 gi|170755319|ref|YP_001780312.1| transcription elongation factor GreA [Clostridium botulinum B1 str.
           Okra]
 gi|169120531|gb|ACA44367.1| transcription elongation factor GreA [Clostridium botulinum B1 str.
           Okra]
 gi|182671032|gb|EDT83006.1| transcription elongation factor GreA [Clostridium botulinum NCTC
           2916]
          Length = 154

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 85/152 (55%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +  +K+++EL +R  ++R  I K   EA A+GD SENAEY+ A      N+ R+
Sbjct: 2   KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L  +I+ A VID        +   +   +       + N  +V   +A+ ++ L+S+ 
Sbjct: 62  QYLLTMISTASVIDEKNQDKSVLGVNSKAKIKFVEDEFETNVSLVTTMDAEPENMLISVE 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S + +AL+GK++GD+  V+APG + T E+L++
Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVLEI 153


>gi|210632436|ref|ZP_03297364.1| hypothetical protein COLSTE_01261 [Collinsella stercoris DSM 13279]
 gi|210159531|gb|EEA90502.1| hypothetical protein COLSTE_01261 [Collinsella stercoris DSM 13279]
          Length = 156

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 88/155 (56%), Gaps = 4/155 (2%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             +I +T++G  K+++EL + + E+   I++ I EARA+GDLSENAEY AAKE Q  N  
Sbjct: 3   ASQIVLTAEGRKKLEEELAYLEGEKAKEIVEHIKEARAFGDLSENAEYDAAKEDQARNAA 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AE+   +  A+  D    S   ++ G+ V+LV+        + IVG  E +V    +S
Sbjct: 63  RIAEIRATLANAQ--DAVAGSNMIVSIGSNVTLVDGEGEASD-FTIVGTTETNVLEHKIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155
             SP+ RA+IG   G+ + V    G+K  Y I ++
Sbjct: 120 NESPVGRAIIGHAEGESVEVVLASGKKRVYTIAKI 154


>gi|116513443|ref|YP_812349.1| transcription elongation factor GreA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116092758|gb|ABJ57911.1| transcription elongation factor GreA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|325125081|gb|ADY84411.1| Transcriptional elongation factor [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 153

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   +  +RPR ++ + EARA GDLSEN EY  AK      + R+  L
Sbjct: 7   MTPEGYKQIEDEIAALKA-DRPRRVQNLKEARALGDLSENTEYSTAKRELRHLDSRVRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AEVI+  T++  ++  G  V +  ++  + + Y+IVG  E  V  G +   SP+
Sbjct: 66  NKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGKLPFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
             AL+  + GD ++V AP G+    IL V 
Sbjct: 124 GHALMKHKAGDRVTVKAPMGDYEVTILSVK 153


>gi|116493793|ref|YP_805527.1| transcription elongation factor GreA [Lactobacillus casei ATCC 334]
 gi|116103943|gb|ABJ69085.1| transcription elongation factor GreA [Lactobacillus casei ATCC 334]
          Length = 155

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 3/155 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV    +T  G   ++QE+   +   RP  IK +++A A GD SENAEY AAK      E
Sbjct: 1   MVTYHEITPTGLANLKQEVEDLKTI-RPAKIKNLADAAALGDRSENAEYSAAKRELRQLE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+  L+ +I  A+V   +         G  ++L   +  D   Y++VG  EA +    +
Sbjct: 60  GRLRYLDKLIRYAKVTHPAASDI--ADIGNRITLKFDDDEDHATYELVGPAEAGMGQDKL 117

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +I+SP+  A+     GD ++V AP G     ++ +
Sbjct: 118 AINSPLGAAIRQHHAGDTVTVTAPSGSYQVTLMNI 152


>gi|322387442|ref|ZP_08061052.1| transcription elongation factor GreA [Streptococcus infantis ATCC
           700779]
 gi|321141971|gb|EFX37466.1| transcription elongation factor GreA [Streptococcus infantis ATCC
           700779]
          Length = 160

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 101/157 (64%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MVEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ + +A G TV++ E    +K+ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDAVAKNEVAIGKTVTIQEVGEDEKEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD++++  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKKGDVVTIETPAGSYDVKILKVE 157


>gi|256827725|ref|YP_003151684.1| transcription elongation factor GreA [Cryptobacterium curtum DSM
           15641]
 gi|256583868|gb|ACU95002.1| transcription elongation factor GreA [Cryptobacterium curtum DSM
           15641]
          Length = 156

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 5/159 (3%)

Query: 1   MVDKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M D+  + T +G  K+++EL + + E+R  +   I  AR +GD+SEN+EY  AK  Q L 
Sbjct: 1   MADQSYILTEEGKQKLEEELHYLETEKRAEVGARIKVAREFGDISENSEYDDAKNEQGLL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+AE+  I++ A V+  +     ++  G+TV++    S     + IVG  E++V+ G 
Sbjct: 61  EARIAEINRILSEATVV-AAPKRSSKVGIGSTVTVAIGGSQRV--FNIVGAAESNVREGR 117

Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +S  SP+  ALIG + GD +    P G E    I ++  
Sbjct: 118 ISNESPVGSALIGHKKGDTVVAEGPTGREVKMTIEKIEH 156


>gi|191637035|ref|YP_001986201.1| transcription elongation factor GreA [Lactobacillus casei BL23]
 gi|239631048|ref|ZP_04674079.1| transcription elongation factor greA 1 [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|301065369|ref|YP_003787392.1| transcription elongation factor [Lactobacillus casei str. Zhang]
 gi|190711337|emb|CAQ65343.1| Transcription elongation factor [Lactobacillus casei BL23]
 gi|239527331|gb|EEQ66332.1| transcription elongation factor greA 1 [Lactobacillus paracasei
           subsp. paracasei 8700:2]
 gi|300437776|gb|ADK17542.1| Transcription elongation factor [Lactobacillus casei str. Zhang]
 gi|327381062|gb|AEA52538.1| Transcription elongation factor GreA [Lactobacillus casei LC2W]
 gi|327384237|gb|AEA55711.1| Transcription elongation factor GreA [Lactobacillus casei BD-II]
          Length = 155

 Score =  107 bits (268), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 3/155 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV    +T  G   ++QE+   +   RP  IK +++A A GD SENAEY AAK      E
Sbjct: 1   MVTYHEITPTGLANLKQEVEDLKTI-RPAKIKNLADAAALGDRSENAEYSAAKRELRQLE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+  L+ +I  A+V   +         G  ++L   +  D+  Y++VG  EA +    +
Sbjct: 60  GRLRYLDKLIRYAKVTHPAASDI--ADIGNRITLKFDDDEDQATYELVGPAEAGMGQDKL 117

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +I+SP+  A+     GD ++V AP G     ++ +
Sbjct: 118 AINSPLGAAIRQHHAGDTVTVTAPSGSYQVTLMNI 152


>gi|123430789|ref|XP_001307960.1| transcription elongation factor [Trichomonas vaginalis G3]
 gi|121889615|gb|EAX95030.1| transcription elongation factor, putative [Trichomonas vaginalis
           G3]
          Length = 150

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 79/139 (56%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           I  T +G +KI+ E+ + +   R  + + I  A  YGDLSEN+EY  AK  Q   E R+A
Sbjct: 12  IFFTPEGLEKIENEIEYLKTVRRKEVSERIKVALGYGDLSENSEYDEAKNEQAQVEERIA 71

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LE ++  A++ID   ++ D +  G++V + E ++ ++  Y IVG  EAD   G +S  S
Sbjct: 72  KLEMMVRNAKIIDEKDLNTDVVNIGSSVKVRELDTMEEDEYTIVGSAEADPLEGKISNES 131

Query: 125 PIARALIGKELGDIISVNA 143
           P+   LIG   GD++ V  
Sbjct: 132 PVGSKLIGNRAGDVVEVEV 150


>gi|302542896|ref|ZP_07295238.1| transcription elongation factor GreA [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302460514|gb|EFL23607.1| transcription elongation factor GreA [Streptomyces himastatinicus
           ATCC 53653]
          Length = 165

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +D+++ EL +     R  I K I  AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYDQLKAELEYLSGPARIEIAKKIEAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +    +G            + +  D   + +   + A       S  SP
Sbjct: 70  LTQLLEHAKVGEAPADTGVVAPGMVVTIAFDGDPDDTLTFLLASREYASADVETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   + GK++G       P G   +  IL 
Sbjct: 130 LGTGVNGKKVGQDAEYELPNGRTASVRILD 159


>gi|320335243|ref|YP_004171954.1| transcription elongation factor GreA [Deinococcus maricopensis DSM
           21211]
 gi|319756532|gb|ADV68289.1| transcription elongation factor GreA [Deinococcus maricopensis DSM
           21211]
          Length = 156

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 94/155 (60%), Gaps = 3/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KI +T KG+DK+++ L + Q   R +I + +  A A GD+ E+A Y  A+  Q+ NE R
Sbjct: 4   EKITMTRKGYDKLRETLEYLQTTRREQISEYMGSALADGDIRESAAYDEARMQQSENEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELE+ ++RA++++    S   I  GA V + +   G++++ +IVG  EAD   G +S 
Sbjct: 64  ILELEDQLSRAQIVEE--GSQTGIGLGAKVRVKDAK-GNERDIEIVGTYEADALKGKISD 120

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ +AL G   GD++ VN P G++ + ++ V +
Sbjct: 121 HSPLGQALAGHGTGDMVVVNLPKGQQKFTVISVKY 155


>gi|157150808|ref|YP_001449835.1| transcription elongation factor GreA [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262282147|ref|ZP_06059916.1| transcription elongation factor greA [Streptococcus sp. 2_1_36FAA]
 gi|189042252|sp|A8AVM5|GREA_STRGC RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|157075602|gb|ABV10285.1| transcription elongation factor greA [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|262262601|gb|EEY81298.1| transcription elongation factor greA [Streptococcus sp. 2_1_36FAA]
          Length = 160

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLAEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE++D   ++ D +  G TV++ E    +K+ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVDSDAVAKDEVGIGKTVTIQEVGETEKEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GDI +V  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKKGDIATVETPVGSYDVKILKVE 157


>gi|153941346|ref|YP_001390030.1| transcription elongation factor GreA [Clostridium botulinum F str.
           Langeland]
 gi|152937242|gb|ABS42740.1| transcription elongation factor GreA [Clostridium botulinum F str.
           Langeland]
 gi|295318115|gb|ADF98492.1| transcription elongation factor GreA [Clostridium botulinum F str.
           230613]
          Length = 154

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 84/152 (55%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +  +K+++EL +R  ++R  I K   EA A+GD SENAEY+ A      N+ R+
Sbjct: 2   KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L  +I+ A VID        +   +   +       + N  +V   +A+ +  L+S+ 
Sbjct: 62  QYLLTMISTASVIDEKNQDKSVLGVNSKAKIKFVEDEFETNVSLVTTMDAEPEKMLISVE 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S + +AL+GK++GD+  V+APG + T E+L++
Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVLEI 153


>gi|300812144|ref|ZP_07092589.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300496872|gb|EFK31949.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|325684830|gb|EGD26979.1| transcription elongation factor GreA 1 [Lactobacillus delbrueckii
           subsp. lactis DSM 20072]
          Length = 153

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   +  +RPR ++ + EARA GDLSEN EY  AK      + R+  L
Sbjct: 7   MTPEGYKQIEDEIAALKA-DRPRRVQNLKEARALGDLSENTEYSTAKRELRHLDSRVRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AEVI+  T++  ++  G  V +  ++  + + Y+IVG  E  V  G +   SP+
Sbjct: 66  NKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGKLPFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
             AL+  + GD ++V AP G+    IL V 
Sbjct: 124 GHALMKHKAGDRVTVEAPMGDYEVTILSVK 153


>gi|258592300|emb|CBE68609.1| Transcription elongation factor greA (Transcript cleavage factor
           greA) [NC10 bacterium 'Dutch sediment']
          Length = 166

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 55/143 (38%), Positives = 86/143 (60%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            D ++QE     +E R  + K I  AR  GDL EN EY+  K+ Q   + RMA L+  I 
Sbjct: 7   LDDLRQEFNKLDREFRQDLPKKIQAARELGDLRENGEYETIKDRQGFVKARMAFLQQRIA 66

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
               ID+  +  DR+A G+TV L++++SG++  Y +V  +  D   G +S++SPI R+LI
Sbjct: 67  EISKIDLRQIPKDRVALGSTVHLIDEDSGEETVYTLVFPELMDSARGWISVASPIGRSLI 126

Query: 132 GKELGDIISVNAPGGEKTYEILQ 154
           GK+ GD + +N PGG K +E+++
Sbjct: 127 GKQAGDRVVMNTPGGTKAFEMMK 149


>gi|332522954|ref|ZP_08399206.1| transcription elongation factor GreA [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332314218|gb|EGJ27203.1| transcription elongation factor GreA [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 160

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    +++++EL   +   RP +++ I  AR+YGDLSEN+EY AAK+ Q   
Sbjct: 1   MAEKTYPMTEIEKEQLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYDAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+ID   ++ D +A G TV + E  + DK  Y IVG   AD+ SG 
Sbjct: 61  EGQISTLETKIRFAEIIDSDAVAKDEVAIGKTVVVQEVGTNDKDTYHIVGSAGADIFSGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPIA+ALIGK+ GD   + +P      EI+ V 
Sbjct: 121 ISNESPIAQALIGKKKGDKAQIVSPATTYEVEIVSVE 157


>gi|307718793|ref|YP_003874325.1| hypothetical protein STHERM_c11070 [Spirochaeta thermophila DSM
           6192]
 gi|306532518|gb|ADN02052.1| hypothetical protein STHERM_c11070 [Spirochaeta thermophila DSM
           6192]
          Length = 898

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 81/152 (53%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           I VT   +   Q+EL++  + E P+  K IS+A   GDL ENAEY+AAKE Q +    + 
Sbjct: 742 IMVTPAAYAAKQKELKYLHEVEVPKNSKEISQALLLGDLRENAEYKAAKERQEMLNSTIG 801

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +L+  + RA+++    +   +I+FG  V+L+ K +  ++ Y I+G  E++   G++S  S
Sbjct: 802 KLKEELERAQIVRPDEVDASQISFGTKVTLLNKETKKRETYVILGPWESNPDKGIISYLS 861

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P    L G + G+ +          Y + ++ 
Sbjct: 862 PFGSELYGHKEGEELEFTINERTYHYVVEKIE 893


>gi|226947932|ref|YP_002803023.1| transcription elongation factor GreA [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844208|gb|ACO86874.1| transcription elongation factor GreA [Clostridium botulinum A2 str.
           Kyoto]
          Length = 154

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 85/152 (55%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +  +K+++EL +R  ++R  I K   EA A+GD SENAEY+ A      N+ R+
Sbjct: 2   KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L  +I+ A VID        +   +   +       + N  +V   +A+ ++ L+S+ 
Sbjct: 62  QYLLTMISTASVIDEKNQDKSVLGVNSKAKIKFVEDEFETNVSLVTTMDAEPENMLISVE 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S + +AL+GK++GD+  V+APG + T E++++
Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVIEI 153


>gi|302558762|ref|ZP_07311104.1| transcription elongation factor GreA [Streptomyces griseoflavus
           Tu4000]
 gi|302476380|gb|EFL39473.1| transcription elongation factor GreA [Streptomyces griseoflavus
           Tu4000]
          Length = 165

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + ++K++ EL +     R  I   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNKLKVELEYLTGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +     G            + +  D   + +   + A  +    S  SP
Sbjct: 70  LTQLLESAKVGEAPAADGAVAPGMVVTIAFDGDEDDTLTFLLASREYASSEIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   ++G ++G+      P G+K   +IL+
Sbjct: 130 LGSGVMGHKVGEDAEYELPNGKKAMVKILE 159


>gi|170759281|ref|YP_001786034.1| transcription elongation factor GreA [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169406270|gb|ACA54681.1| transcription elongation factor GreA [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 154

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 84/152 (55%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +  +K+++EL +R  ++R  I K   EA A+GD SENAEY+ A      N+ R+
Sbjct: 2   KNILTEENMNKLKEELEYRMTKKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L  +I+ A VID        +   +   +       + N  +V   +A+ +  L+S+ 
Sbjct: 62  QYLLTMISTASVIDERNQDKSVLGVNSKAKIKFVEDEFETNVSLVTTMDAEPEKMLISVE 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S + +AL+GK++GD+  V+APG + T E+L++
Sbjct: 122 SDLGKALMGKKVGDVAEVDAPGEKYTVEVLEI 153


>gi|293364014|ref|ZP_06610750.1| putative transcription elongation factor GreA [Mycoplasma
           alligatoris A21JP2]
 gi|292552504|gb|EFF41278.1| putative transcription elongation factor GreA [Mycoplasma
           alligatoris A21JP2]
          Length = 160

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/153 (37%), Positives = 88/153 (57%), Gaps = 3/153 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KI +  +  +K + E       ERP +  A+ EARA GDLSENAEY AA++ Q   EGR
Sbjct: 8   EKIYLAKETLEKYKNEYDHLVNVERPSVQAALKEARAQGDLSENAEYDAARDRQGTIEGR 67

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           ++ELE I+ RAE+I  ST    +I  G+T++   +   +K    I+G  +A+     +S 
Sbjct: 68  ISELEAILDRAEII--STTLDGKIGIGSTITYFSELDKEKHKVTIMGSHDANPFENKISN 125

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SP+A A++  + GD I V+AP  +   EIL +
Sbjct: 126 ESPLAVAMLDAKKGDKIEVDAPV-KYFIEILDI 157


>gi|28211542|ref|NP_782486.1| transcription elongation factor greA [Clostridium tetani E88]
 gi|28203983|gb|AAO36423.1| transcription elongation factor greA [Clostridium tetani E88]
          Length = 154

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 81/151 (53%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +  +K+++EL +R   +R  I K   EA A+GD SENAEY+ A      N+ R+
Sbjct: 2   KNILTEENMNKLKEELEYRMTTKRAEIAKEKLEAAAHGDRSENAEYKEACANYRENDNRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L  +I+ A VID        +   +   +       + N  +V   +A+ +   +S+ 
Sbjct: 62  QYLLTMISTASVIDEKNQDKSVLGVNSKCKIKFVEDDFETNVSLVTTMDAEPEKMHISVE 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           S + +AL+GK++GD++ V APG + T E+L+
Sbjct: 122 SDLGKALMGKKVGDVVEVYAPGEKYTVEVLE 152


>gi|325283061|ref|YP_004255602.1| transcription elongation factor GreA [Deinococcus proteolyticus
           MRP]
 gi|324314870|gb|ADY25985.1| transcription elongation factor GreA [Deinococcus proteolyticus
           MRP]
          Length = 155

 Score =  107 bits (266), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 88/154 (57%), Gaps = 4/154 (2%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           KI +T +G+D++++ L   +   R +I + +  A   GDL E+A Y  A+  Q+ NE R+
Sbjct: 5   KISITQRGYDRLKETLHHLKTTRREQISENMGRAIEDGDLRESAAYDEARMEQSENEARI 64

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            +LE+ + RA +++     G  +     V    ++   ++ +++VG  EADV++G VS +
Sbjct: 65  RDLEDQLERAVIVEEDAGGGAGLGAKVKV----RSGKTERTFELVGTFEADVRAGKVSDA 120

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPI +AL+G   G  + V  P G+  +E+L+V +
Sbjct: 121 SPIGQALLGAREGAKVKVPGPKGDMEFEVLEVTY 154


>gi|282865260|ref|ZP_06274312.1| transcription elongation factor GreA [Streptomyces sp. ACTE]
 gi|282559733|gb|EFB65283.1| transcription elongation factor GreA [Streptomyces sp. ACTE]
          Length = 165

 Score =  107 bits (266), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 1/149 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +++++ EL +     R  I   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNQLKAELEYLSGPARTEISVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +     G            + +  D   + +   + A       S  SP
Sbjct: 70  LTQLLEHAKVGEPPADDGVVEPGMVVTIAFDGDPDDTLTFLLASREYATGDIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEIL 153
           +   + GK +G+      P G+K T +IL
Sbjct: 130 LGTGVNGKRMGEEAEYELPNGKKATVKIL 158


>gi|104773455|ref|YP_618435.1| transcription elongation factor GreA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
 gi|103422536|emb|CAI97129.1| Transcription elongation factor GreA [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC 11842]
          Length = 153

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 81/150 (54%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   +  +RPR ++ + EARA GDLSEN EY  AK      + R+  L
Sbjct: 7   MTPEGYKQIEDEIAALKA-DRPRRVQNLKEARALGDLSENTEYSTAKRELRHLDSRVRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AEVI+  T++  ++  G  V +  ++  + + Y+IVG  E  V  G +   SP+
Sbjct: 66  NKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGKLPFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
             AL+  + GD + V AP G+    IL V 
Sbjct: 124 GHALMKHKAGDRVKVKAPMGDYEVTILSVK 153


>gi|313123017|ref|YP_004033276.1| transcription elongation factor grea [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
 gi|312279580|gb|ADQ60299.1| Transcription elongation factor GreA [Lactobacillus delbrueckii
           subsp. bulgaricus ND02]
          Length = 153

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   +  +RPR ++ + EARA GDLSEN EY  AK      + R+  L
Sbjct: 7   MTPEGYKQIEDEIAVLKA-DRPRRVQNLKEARALGDLSENTEYSTAKRELRHLDSRVRYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AEVI+  T++  ++  G  V +  ++  + + Y+IVG  E  V  G +   SP+
Sbjct: 66  NKQLKYAEVIE--TVNDGKVNLGKQVEIRYEDDQEVEEYRIVGRMEEAVGDGKLPFDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
             AL+  + GD ++V AP G+    IL V 
Sbjct: 124 GHALMKHKAGDRVTVEAPMGDYEVTILSVK 153


>gi|315185942|gb|EFU19706.1| transcription elongation factor GreA [Spirochaeta thermophila DSM
           6578]
          Length = 898

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 81/152 (53%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           I VT   +   Q+EL++  + E P+  K IS+A   GDL ENAEY+AAKE Q +    + 
Sbjct: 742 IMVTPAAYAAKQKELKYLHEVEVPKNSKEISQALLLGDLRENAEYKAAKERQEMLNSTIG 801

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +L+  + RA+++    +   +I+FG  V+L+ + +  ++ Y I+G  E++   G++S  S
Sbjct: 802 KLKEELERAQIVRPDEVDASQISFGTKVTLLNEETKKRETYVILGPWESNPDKGIISYLS 861

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P    L G + G+ +          Y + ++ 
Sbjct: 862 PFGSELYGHKEGEELEFTINERTYHYVVEKIE 893


>gi|15806181|ref|NP_294886.1| transcription elongation factor [Deinococcus radiodurans R1]
 gi|6458901|gb|AAF10735.1|AE001965_9 transcription elongation factor [Deinococcus radiodurans R1]
          Length = 158

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 87/155 (56%), Gaps = 1/155 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           + + +T +G ++++++L++ +   R +I + + +A   GDL E+A Y  A+  Q+ NE +
Sbjct: 4   EPVRMTRQGKERLEEQLQYLKTTRREQISEYMGKAIEDGDLRESAAYDEARMQQSENEAK 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +AE+E  + RA+++    +    +  GA V + +  +  +   +IVG  E DV  G +S 
Sbjct: 64  IAEIEAQLERAQIMKDEEIDTSAVGVGARVIVEDAQNKQR-TLEIVGSFEVDVLKGKISD 122

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +SP+ +AL+GK  G+      P G  + +++ V +
Sbjct: 123 ASPMGQALLGKRPGESAVWPGPKGNVSLKVISVEY 157


>gi|256848431|ref|ZP_05553873.1| transcription elongation factor GreB [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714698|gb|EEU29677.1| transcription elongation factor GreB [Lactobacillus coleohominis
           101-4-CHN]
          Length = 155

 Score =  106 bits (265), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 6/158 (3%)

Query: 2   VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           + +I    +T +G+ +I+ ++   ++ ERP  I  +  ARA GDLSEN EY  AK     
Sbjct: 1   MTEIYFQKMTPEGYHEIELQIEELKK-ERPTKIARLKAARALGDLSENTEYSTAKRDLRH 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+  L   +T A+VI      G  I  G+TV++   +   +  YQIVG  EAD+ + 
Sbjct: 60  LESRLRYLNKQLTYAKVI--QHRDGGPIDLGSTVTIEFLDDHSQITYQIVGTHEADLANH 117

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            ++  SP+ +A++GK    +++V AP      +I+ V 
Sbjct: 118 KLAFDSPLGQAMMGKMANLVVNVVAPDSTYQVKIINVK 155


>gi|306829823|ref|ZP_07463010.1| transcription elongation factor GreA [Streptococcus mitis ATCC
           6249]
 gi|304427834|gb|EFM30927.1| transcription elongation factor GreA [Streptococcus mitis ATCC
           6249]
          Length = 160

 Score =  106 bits (265), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ D +A G TV++ E    D++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDAVALDEVAIGKTVTIQEVGEDDEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD  ++  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYQVKILKVE 157


>gi|325962607|ref|YP_004240513.1| transcription elongation factor GreA [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468694|gb|ADX72379.1| transcription elongation factor GreA [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 164

 Score =  106 bits (265), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 74/151 (49%), Gaps = 5/151 (3%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + FD+++ EL       R  I++ I +AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 11  WLTQEAFDRLKAELDHLSGPGRAEIVQKIDQARQEGDLKENGGYHAAKEEQGKIEARIRQ 70

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124
           L  ++  A V +     G        V+ +   +GD++ + +   + A D    + S  S
Sbjct: 71  LTVLLRDAHVGEAPADDGIVEPGMIVVARI---AGDEETFLLGSREIAGDSDLDVFSEKS 127

Query: 125 PIARALIGKELGDIISVNAPGGE-KTYEILQ 154
           P+  A++G + G+ +S  AP G+    EIL 
Sbjct: 128 PLGAAILGHKEGESLSYTAPNGKDIKVEILS 158


>gi|139438508|ref|ZP_01772024.1| Hypothetical protein COLAER_01017 [Collinsella aerofaciens ATCC
           25986]
 gi|133776047|gb|EBA39867.1| Hypothetical protein COLAER_01017 [Collinsella aerofaciens ATCC
           25986]
          Length = 156

 Score =  106 bits (265), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 89/155 (57%), Gaps = 4/155 (2%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             +I +T++G  K+ +EL WR+ +    I++ I EARA+GDLSEN+EY AAK+ Q  N  
Sbjct: 3   ASQIVLTAEGRQKLVEELAWREGDYAKEIVEDIKEARAFGDLSENSEYDAAKDKQAQNAA 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+AE++ I+  A+V   +T     ++ G+TVSL++ N        +VG  E +     +S
Sbjct: 63  RIAEIQAILANAQV--AATTGDLTVSIGSTVSLIDPNGE-VMEVTLVGTTETNSLEHKIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
             SP+  A+IG   GD + V  P G  + Y I ++
Sbjct: 120 NESPVGHAIIGHGEGDSVEVVTPSGKTRVYTIAKI 154


>gi|296122734|ref|YP_003630512.1| transcription elongation factor GreA [Planctomyces limnophilus DSM
           3776]
 gi|296015074|gb|ADG68313.1| transcription elongation factor GreA [Planctomyces limnophilus DSM
           3776]
          Length = 160

 Score =  106 bits (265), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 55/157 (35%), Positives = 96/157 (61%), Gaps = 2/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++  P++ +G+DK+++E+R  + ++ P+I +AI+EARA GDL ENAEY   +E Q   + 
Sbjct: 1   MELQPISREGYDKLKEEIRKLEHDDMPKIAEAIAEARAEGDLKENAEYHGQREEQGRLQA 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--L 119
           R+  L++ +    ++D ST+    +AFG  V++   + GD + Y+ VG  E D  S    
Sbjct: 61  RINSLKSKLASCYIVDKSTLPKGVVAFGTRVTVKNTDDGDIEKYEFVGPGEEDYMSDVMK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +  +SP+A AL+GK++ D +S+  P G   YEI ++ 
Sbjct: 121 ILTTSPLASALLGKKVNDKVSIQVPRGTINYEITEIE 157


>gi|307704459|ref|ZP_07641369.1| transcription elongation factor greA [Streptococcus mitis SK597]
 gi|307621979|gb|EFO01006.1| transcription elongation factor greA [Streptococcus mitis SK597]
          Length = 160

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLAEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++  +++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDSVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD  ++  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157


>gi|322377004|ref|ZP_08051497.1| transcription elongation factor GreA [Streptococcus sp. M334]
 gi|321282811|gb|EFX59818.1| transcription elongation factor GreA [Streptococcus sp. M334]
          Length = 160

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++  +++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDSVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD  +V  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKILKVE 157


>gi|116330420|ref|YP_800138.1| fused transcript cleavage factor/uncharacterized domain-containing
           protein [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
 gi|116124109|gb|ABJ75380.1| greA transcription elongation factor-related protein [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 927

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 86/151 (56%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           I VT +  ++ ++E       E P   K I EA+  GDL ENAEY+AA E Q   +  + 
Sbjct: 767 ILVTRRALNRKKEEFEHLLNVEMPENSKDIGEAQERGDLRENAEYKAAMERQVQLQAAIK 826

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE  I  A ++D++ +  D+I  G T  L  +++G+   Y I+G  +AD +  ++S  S
Sbjct: 827 RLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADTEKHIISYQS 886

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+A++L+GK++GD   +N  G E  Y +L++
Sbjct: 887 PLAKSLLGKKVGDAAVLNLTGAETRYTVLEI 917


>gi|116328972|ref|YP_798692.1| fused transcript cleavage factor/uncharacterized domain-containing
           protein [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
 gi|116121716|gb|ABJ79759.1| greA transcription elongation factor-related protein [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 927

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 86/151 (56%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           I VT +  ++ ++E       E P   K I EA+  GDL ENAEY+AA E Q   +  + 
Sbjct: 767 ILVTRRALNRKKEEFEHLLNVEMPENSKDIGEAQERGDLRENAEYKAAMERQVQLQAAIK 826

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE  I  A ++D++ +  D+I  G T  L  +++G+   Y I+G  +AD +  ++S  S
Sbjct: 827 RLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADTEKHIISYQS 886

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+A++L+GK++GD   +N  G E  Y +L++
Sbjct: 887 PLAKSLLGKKVGDAAVLNLTGAETRYTVLEI 917


>gi|307706224|ref|ZP_07643041.1| transcription elongation factor greA [Streptococcus mitis SK321]
 gi|307708401|ref|ZP_07644867.1| transcription elongation factor GreA [Streptococcus mitis NCTC
           12261]
 gi|307615500|gb|EFN94707.1| transcription elongation factor GreA [Streptococcus mitis NCTC
           12261]
 gi|307618414|gb|EFN97564.1| transcription elongation factor greA [Streptococcus mitis SK321]
          Length = 160

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T    +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLAEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++  +++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDSVADDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD  ++  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157


>gi|325971211|ref|YP_004247402.1| transcription elongation factor GreA [Spirochaeta sp. Buddy]
 gi|324026449|gb|ADY13208.1| transcription elongation factor GreA [Spirochaeta sp. Buddy]
          Length = 906

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/147 (30%), Positives = 74/147 (50%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           T+   +  ++EL + Q  E P + + I  AR  GDL EN+EY+  KE QNL    +  L 
Sbjct: 754 TAASLEAKKKELEYIQHVELPEVAREIGTAREMGDLRENSEYKYGKEKQNLLNNTLRRLA 813

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             I RA VI    +   +I FG  V LV+   G +  Y I+G  E++    ++++S+P  
Sbjct: 814 EEIDRATVISKDKVDTTKIGFGTKVVLVDHTKGSEVVYTIMGPWESNPDENIINLSAPFG 873

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQ 154
           RAL+  E+G+  +         + + +
Sbjct: 874 RALLNHEIGERFTFVLNDQPYDFTVKE 900


>gi|29829843|ref|NP_824477.1| transcription elongation factor GreA [Streptomyces avermitilis
           MA-4680]
 gi|81719423|sp|Q82I57|GREA_STRAW RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|29606952|dbj|BAC71012.1| putative transcription elongation factor [Streptomyces avermitilis
           MA-4680]
          Length = 165

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +++++ EL +     R  I   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNQLKAELEYLSGPARTEIAAKIAAAREEGDLRENGGYHAAKEEQGKQELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +     G            + +  D  ++ +   + A       S  SP
Sbjct: 70  LTQLLENAKVGEAPAADGAVAPGMVVTIAFDGDEDDTLDFLLASREYASADIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   + GK++G+      P G+  + +IL+
Sbjct: 130 LGSGVNGKKVGEDAQYELPNGKLASVKILK 159


>gi|146319370|ref|YP_001199082.1| transcription elongation factor GreA [Streptococcus suis 05ZYH33]
 gi|146321576|ref|YP_001201287.1| transcription elongation factor GreA [Streptococcus suis 98HAH33]
 gi|253752398|ref|YP_003025539.1| transcription elongation factor [Streptococcus suis SC84]
 gi|253754224|ref|YP_003027365.1| transcription elongation factor [Streptococcus suis P1/7]
 gi|253756158|ref|YP_003029298.1| transcription elongation factor [Streptococcus suis BM407]
 gi|166200976|sp|A4W3E8|GREA_STRS2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|166201074|sp|A4VX43|GREA_STRSY RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|145690176|gb|ABP90682.1| Transcription elongation factor [Streptococcus suis 05ZYH33]
 gi|145692382|gb|ABP92887.1| Transcription elongation factor [Streptococcus suis 98HAH33]
 gi|251816687|emb|CAZ52328.1| transcription elongation factor [Streptococcus suis SC84]
 gi|251818622|emb|CAZ56456.1| transcription elongation factor [Streptococcus suis BM407]
 gi|251820470|emb|CAR47194.1| transcription elongation factor [Streptococcus suis P1/7]
 gi|319758803|gb|ADV70745.1| transcription elongation factor GreA [Streptococcus suis JS14]
          Length = 160

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T +  +K+++EL   +   RP I++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEIVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ +E  I  AE+++   ++ D +A G TV++ E    +++ Y IVG   ADV +  
Sbjct: 61  EGQISTIETKIRYAEIVNSDAVAADEVAIGKTVTVQEVGETEEEVYHIVGAAGADVFANK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPI  ALIGK+ GD+ ++  P G    +IL+V 
Sbjct: 121 ISNESPIGHALIGKKTGDVATIETPAGSYDVKILKVE 157


>gi|150015636|ref|YP_001307890.1| GreA/GreB family elongation factor [Clostridium beijerinckii NCIMB
           8052]
 gi|149902101|gb|ABR32934.1| GreA/GreB family elongation factor [Clostridium beijerinckii NCIMB
           8052]
          Length = 154

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 80/151 (52%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T +   K+++EL +R   +R  I K    A A+GD SENAEY+ A      N+ R+ 
Sbjct: 3   NILTEENIKKLREELDYRMTVKRAEIAKEKLVAAAHGDRSENAEYKEACRNYRENDNRIQ 62

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L  +I+ A VID  ++    +   +   +      D+    +V   + D ++ ++SI S
Sbjct: 63  YLLTMISTATVIDDGSIDKSVLGINSKARIRFVEDDDEVVVTLVTTMDLDPENMIISIES 122

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
            + +AL G + GDI+ VNAPG + + EIL+V
Sbjct: 123 DLGKALSGNKAGDIVEVNAPGEKYSVEILEV 153


>gi|116669728|ref|YP_830661.1| GreA/GreB family elongation factor [Arthrobacter sp. FB24]
 gi|116609837|gb|ABK02561.1| GreA/GreB family elongation factor [Arthrobacter sp. FB24]
          Length = 164

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 5/151 (3%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + FD+++ EL       R  I++ I  AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 11  WLTQEAFDRLKAELDHLSGAGRAEIVQKIEAARQEGDLKENGGYHAAKEEQGKIEARIRQ 70

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124
           L  ++  A V +     G        V+ +   +GD++ + +   + A D    + S  S
Sbjct: 71  LTVLLRDAHVGESPADDGIVEPGMIVVARI---AGDEETFLLGSREIAGDSDLDVFSEKS 127

Query: 125 PIARALIGKELGDIISVNAPGGE-KTYEILQ 154
           P+  A++G + GD +S  AP G+  T EIL 
Sbjct: 128 PLGSAIVGHKEGDKLSYTAPNGKDITVEILS 158


>gi|309798572|ref|ZP_07692847.1| transcription elongation factor GreA [Streptococcus infantis
           SK1302]
 gi|308117808|gb|EFO55209.1| transcription elongation factor GreA [Streptococcus infantis
           SK1302]
          Length = 160

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ D +A G TV++ E    D++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDDEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD  ++  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157


>gi|223936169|ref|ZP_03628082.1| GreA/GreB family elongation factor [bacterium Ellin514]
 gi|223895031|gb|EEF61479.1| GreA/GreB family elongation factor [bacterium Ellin514]
          Length = 170

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 78/154 (50%), Gaps = 14/154 (9%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  +++ EL   Q E+R +         A G+ S N     A+    L    +
Sbjct: 30  KNYLTPDGAQRLRAELNRLQAEKRSQT--------ATGEFSGN-----AQTEMQLVGQHI 76

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            +LE  +  AE++       +++ FGATV++ +++ G++  Y+IVG  E D+    VS  
Sbjct: 77  LQLEQSLATAEIVPPPPQPWEQVRFGATVTVRDES-GNETRYRIVGVDETDIDRDWVSWL 135

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SPIARALI   +G+ +    P GEK  EI+ + +
Sbjct: 136 SPIARALINARIGERVHFRFPAGEKQLEIVSITY 169


>gi|125718595|ref|YP_001035728.1| transcription elongation factor GreA [Streptococcus sanguinis SK36]
 gi|323351003|ref|ZP_08086660.1| transcription elongation factor GreA [Streptococcus sanguinis
           VMC66]
 gi|166200977|sp|A3CPS3|GREA_STRSV RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|125498512|gb|ABN45178.1| Transcription elongation factor GreA, putative [Streptococcus
           sanguinis SK36]
 gi|322122727|gb|EFX94436.1| transcription elongation factor GreA [Streptococcus sanguinis
           VMC66]
 gi|324991292|gb|EGC23225.1| transcription elongation factor GreA [Streptococcus sanguinis
           SK353]
 gi|324993649|gb|EGC25568.1| transcription elongation factor GreA [Streptococcus sanguinis
           SK405]
 gi|324995039|gb|EGC26952.1| transcription elongation factor GreA [Streptococcus sanguinis
           SK678]
 gi|325687131|gb|EGD29154.1| transcription elongation factor GreA [Streptococcus sanguinis SK72]
 gi|325690939|gb|EGD32939.1| transcription elongation factor GreA [Streptococcus sanguinis
           SK115]
 gi|325695125|gb|EGD37027.1| transcription elongation factor GreA [Streptococcus sanguinis
           SK150]
 gi|327462918|gb|EGF09239.1| transcription elongation factor GreA [Streptococcus sanguinis SK1]
 gi|327470408|gb|EGF15864.1| transcription elongation factor GreA [Streptococcus sanguinis
           SK330]
 gi|327474522|gb|EGF19927.1| transcription elongation factor GreA [Streptococcus sanguinis
           SK408]
 gi|327490078|gb|EGF21866.1| transcription elongation factor GreA [Streptococcus sanguinis
           SK1058]
 gi|332359138|gb|EGJ36959.1| transcription elongation factor GreA [Streptococcus sanguinis SK49]
 gi|332367391|gb|EGJ45124.1| transcription elongation factor GreA [Streptococcus sanguinis
           SK1059]
          Length = 160

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDAVAKDEVAIGKTVTIQEVGESEEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD  +V  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKILKVE 157


>gi|119963879|ref|YP_947068.1| transcription elongation factor GreA [Arthrobacter aurescens TC1]
 gi|119950738|gb|ABM09649.1| putative transcription elongation factor GreA [Arthrobacter
           aurescens TC1]
          Length = 164

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 74/151 (49%), Gaps = 5/151 (3%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + FD++Q EL       R  I++ I  AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 11  WLTQEAFDRLQAELDHLSGAGRAEIVQKIEAARQEGDLKENGGYHAAKEEQGKIEARIRQ 70

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124
           L  ++  A+V +     G        V+ +   +GD++ + +   + A D    + S  S
Sbjct: 71  LTALLRDAQVGEAPADDGIVEPGMLVVARI---AGDEETFLLGSREIAGDSDLDVFSEKS 127

Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           P+  A+IG + GD +S  AP G E   EI+ 
Sbjct: 128 PLGAAIIGHKEGDSLSYVAPNGKEIQVEIVS 158


>gi|293365798|ref|ZP_06612504.1| transcription elongation factor GreA [Streptococcus oralis ATCC
           35037]
 gi|307703334|ref|ZP_07640278.1| transcription elongation factor GreA [Streptococcus oralis ATCC
           35037]
 gi|291315731|gb|EFE56178.1| transcription elongation factor GreA [Streptococcus oralis ATCC
           35037]
 gi|307623110|gb|EFO02103.1| transcription elongation factor GreA [Streptococcus oralis ATCC
           35037]
          Length = 160

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEVGEDEEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI RALIGK+ GD  ++  P G    +IL+V 
Sbjct: 121 VSNESPIGRALIGKKTGDTATIETPVGSYEVKILKVE 157


>gi|223933721|ref|ZP_03625695.1| transcription elongation factor GreA [Streptococcus suis 89/1591]
 gi|302024344|ref|ZP_07249555.1| transcription elongation factor GreA [Streptococcus suis 05HAS68]
 gi|330833338|ref|YP_004402163.1| transcription elongation factor [Streptococcus suis ST3]
 gi|223897602|gb|EEF63989.1| transcription elongation factor GreA [Streptococcus suis 89/1591]
 gi|292559001|gb|ADE32002.1| Prokaryotic transcription elongation factor GreA [Streptococcus
           suis GZ1]
 gi|329307561|gb|AEB81977.1| transcription elongation factor [Streptococcus suis ST3]
          Length = 160

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T +  +K+++EL   +   RP I++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEIVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ +E  I  AE+++   ++ D +A G TV++ E    +++ Y IVG   AD  +  
Sbjct: 61  EGQISTIETKIRYAEIVNSDAVAADEVAIGKTVTVQEVGETEEEVYHIVGAAGADAFANK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPI  ALIGK+ GD+ ++  P G    +IL+V 
Sbjct: 121 ISNESPIGHALIGKKTGDVATIETPAGSYDVKILKVE 157


>gi|332358236|gb|EGJ36064.1| transcription elongation factor GreA [Streptococcus sanguinis
           SK355]
          Length = 160

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDAVAKDEVAIGKTVTIQEIGESEEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD  +V  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKILKVE 157


>gi|330950316|gb|EGH50576.1| transcription elongation factor GreA [Pseudomonas syringae Cit 7]
          Length = 126

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 1/126 (0%)

Query: 34  ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD-RIAFGATV 92
           I  AR  GDL ENAEY AA+E Q + E R+ ++E  +  A +ID++T+    ++ FG TV
Sbjct: 1   IGTARELGDLKENAEYHAAREQQGMVEARIRDIEGRMQNAVIIDVTTIPHTGKVIFGTTV 60

Query: 93  SLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
            +    + +   YQIVG+ EAD++ G +S+ SPIARALI KE GD++ V  P G   YEI
Sbjct: 61  EIANVETDESVVYQIVGEDEADIKKGKISVGSPIARALIAKEEGDVVVVKTPSGVIEYEI 120

Query: 153 LQVLWI 158
           ++V  I
Sbjct: 121 IEVRHI 126


>gi|331700830|ref|YP_004397789.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL
           B-30929]
 gi|329128173|gb|AEB72726.1| transcription elongation factor GreA [Lactobacillus buchneri NRRL
           B-30929]
          Length = 155

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 3/138 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G+++I+ E+R  +   RP  IK++++ARA GDLSENAEY AAK      E R+  L
Sbjct: 8   ITKFGYEQIESEIRELENS-RPAKIKSLADARALGDLSENAEYSAAKRDLRHLESRLRFL 66

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  A+V   S    D +  G TV     +    + Y+IVG  E D+  G +SI+SPI
Sbjct: 67  RKQLQYAQVYTPSNN--DTVEVGKTVKFEFLDDHSTETYEIVGTPEVDIDHGKISIASPI 124

Query: 127 ARALIGKELGDIISVNAP 144
             AL+    GDI++V+AP
Sbjct: 125 GSALLNHHSGDIVTVSAP 142


>gi|307825791|ref|ZP_07656007.1| GreA/GreB family elongation factor [Methylobacter tundripaludum
           SV96]
 gi|307733099|gb|EFO03960.1| GreA/GreB family elongation factor [Methylobacter tundripaludum
           SV96]
          Length = 166

 Score =  106 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 2/152 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +G+  ++ ELR     +R  + +A+S A A GD SENAEY   K+     + R+  
Sbjct: 14  YITPEGYQSLEIELRDLWT-KRKEVTQALSAAAAEGDRSENAEYIYRKKELRGIDRRIHY 72

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  +    ++       DRI F A V+L  +    +  Y+IVG  E + +   +S+ SP
Sbjct: 73  LQKRLPSLNIVSQPPDDQDRIFFSAWVTLENEAGE-EVTYRIVGADELNPKKHYISLDSP 131

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +ARAL+ K   D +++     E  Y ++ + +
Sbjct: 132 LARALLKKTFDDAVAIKNELKETRYTVVDINY 163


>gi|270292312|ref|ZP_06198523.1| transcription elongation factor GreA [Streptococcus sp. M143]
 gi|315613482|ref|ZP_07888390.1| transcription elongation factor GreA [Streptococcus sanguinis ATCC
           49296]
 gi|322375565|ref|ZP_08050077.1| transcription elongation factor GreA [Streptococcus sp. C300]
 gi|331266043|ref|YP_004325673.1| transcription elongation factor GreA [Streptococcus oralis Uo5]
 gi|270278291|gb|EFA24137.1| transcription elongation factor GreA [Streptococcus sp. M143]
 gi|315314478|gb|EFU62522.1| transcription elongation factor GreA [Streptococcus sanguinis ATCC
           49296]
 gi|321279273|gb|EFX56314.1| transcription elongation factor GreA [Streptococcus sp. C300]
 gi|326682715|emb|CBZ00332.1| transcription elongation factor GreA [Streptococcus oralis Uo5]
          Length = 160

 Score =  106 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEVGEDEEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI RALIGK+ GD  ++  P G    +IL+V 
Sbjct: 121 VSNESPIGRALIGKKTGDTATIETPVGSYDVKILKVE 157


>gi|261885949|ref|ZP_06009988.1| transcription elongation factor GreA [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 139

 Score =  106 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 52/128 (40%), Positives = 90/128 (70%), Gaps = 2/128 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +  P+T  G++K+  EL+  +  +RP I++ I  AR++GDL ENAEY AA+E Q   E
Sbjct: 1   MTE--PMTLYGYEKLSSELKDLKLVQRPAIVEEIDIARSHGDLKENAEYHAAREKQAFIE 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+AEL +I++RA+VI+ S    DR+ FG+T+++++ ++  +  Y IVG  E++++ GL+
Sbjct: 59  NRIAELSDILSRAKVINPSEYEHDRVKFGSTITIMDVDTELETTYTIVGISESNLERGLI 118

Query: 121 SISSPIAR 128
           SI++P+A+
Sbjct: 119 SINTPLAK 126


>gi|322391681|ref|ZP_08065149.1| transcription elongation factor GreA [Streptococcus peroris ATCC
           700780]
 gi|321145492|gb|EFX40885.1| transcription elongation factor GreA [Streptococcus peroris ATCC
           700780]
          Length = 160

 Score =  106 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 66/157 (42%), Positives = 100/157 (63%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MVEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKVARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ D +A G TV++ E    D++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEVGEDDEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GDI +V  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKTGDIATVETPVGSYDVKILKVE 157


>gi|227545317|ref|ZP_03975366.1| transcription elongation factor [Lactobacillus reuteri CF48-3A]
 gi|300908606|ref|ZP_07126069.1| transcription elongation factor [Lactobacillus reuteri SD2112]
 gi|227184713|gb|EEI64784.1| transcription elongation factor [Lactobacillus reuteri CF48-3A]
 gi|300894013|gb|EFK87371.1| transcription elongation factor [Lactobacillus reuteri SD2112]
          Length = 192

 Score =  106 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 80/150 (53%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G+ +I++++   +Q +RP  I  +  ARA GDLSEN EY  AK      E R+  L
Sbjct: 45  MTANGYHEIEEQIAKLKQ-QRPAKIGQLKAARALGDLSENTEYSTAKRELRHLESRLRYL 103

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AE++         I  G TV +  ++  +++ Y IVG QEAD+    +S  SP+
Sbjct: 104 NKQLQYAEIVTPKND--HTIDLGTTVIIEFEDDHEQETYHIVGKQEADLAKQKISFDSPL 161

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +AL+ K  G  ++V AP      +I+++ 
Sbjct: 162 GQALLHKTAGITVTVEAPQSSYKVKIVKIE 191


>gi|240047822|ref|YP_002961210.1| transcription elongation factor GreA [Mycoplasma conjunctivae
           HRC/581]
 gi|239985394|emb|CAT05407.1| Transcription elongation factor [Mycoplasma conjunctivae]
          Length = 161

 Score =  106 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 55/155 (35%), Positives = 90/155 (58%), Gaps = 3/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           ++I +T +  ++++QEL      ER  +I+ I  AR  GDLSENAEY AA+E Q + E R
Sbjct: 7   NQILLTKEKLEELKQELNNLINIERNNVIEEIKYARQQGDLSENAEYDAAREKQGVIESR 66

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGLVS 121
           + EL+ IIT+A++I  +      I+ G+ V++    +     +QIVG   +AD     +S
Sbjct: 67  IRELDAIITKAQII-RTNTGSSSISVGSKVTIENLKNNKINTFQIVGSSIDADPFQNKIS 125

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           ISS  A+A++G+  GD + V+    + +  IL+V 
Sbjct: 126 ISSAFAQAIMGQHEGDELDVDTIE-KYSVRILKVE 159


>gi|182436357|ref|YP_001824076.1| transcription elongation factor GreA [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326776981|ref|ZP_08236246.1| transcription elongation factor GreA [Streptomyces cf. griseus
           XylebKG-1]
 gi|178464873|dbj|BAG19393.1| putative transcription elongation factor [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326657314|gb|EGE42160.1| transcription elongation factor GreA [Streptomyces cf. griseus
           XylebKG-1]
          Length = 165

 Score =  106 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +++++ EL       R  I   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNQLKAELEHLSGPARTEIAVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +     G            + +  D   + +   + A  +    S  SP
Sbjct: 70  LTQLLEHAKVGEAPADDGVVEPGMVVTIAFDGDENDTLTFLLASREYASTEIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   + GK  GD      P G+  + +IL 
Sbjct: 130 LGLGVNGKRTGDDADYELPNGKTASVKILA 159


>gi|307706015|ref|ZP_07642838.1| transcription elongation factor greA [Streptococcus mitis SK564]
 gi|307620434|gb|EFN99547.1| transcription elongation factor greA [Streptococcus mitis SK564]
          Length = 160

 Score =  106 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++  +++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDSVADDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD  ++  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157


>gi|182418041|ref|ZP_02949346.1| transcription elongation factor GreA [Clostridium butyricum 5521]
 gi|237666078|ref|ZP_04526066.1| GreA/GreB family elongation factor [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182378096|gb|EDT75632.1| transcription elongation factor GreA [Clostridium butyricum 5521]
 gi|237659025|gb|EEP56577.1| GreA/GreB family elongation factor [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 154

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 80/149 (53%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +   K+Q EL +R   +R  I K    A A+GD SENAEY+ A      N+ R+  L
Sbjct: 5   LTQENMKKLQDELEYRMTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
             +I+ A VID        +   +   +   +  +++   +V   + D ++ ++SI S +
Sbjct: 65  MTMISTATVIDDEDQDKSVLGINSKAKVKFIDDDEEEIITLVTTMDLDPENMMISIESDL 124

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
            +ALIGK+ G+I+ V APG + + EIL++
Sbjct: 125 GKALIGKKAGEIVEVEAPGDKYSVEILEI 153


>gi|293381483|ref|ZP_06627478.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Lactobacillus crispatus 214-1]
 gi|290921953|gb|EFD98960.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Lactobacillus crispatus 214-1]
          Length = 147

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +  +G+ +I+ E+   ++ +RPR IK +  ARA GDLSEN EY  AK      + R+  L
Sbjct: 1   MIPEGYQQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 59

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AE++        ++  G TV L   +  + + Y++VG  EAD+ +G VS  SP+
Sbjct: 60  GKQLKYAEIVKAEDD--GKVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPL 117

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A++ KE G   +V AP GE    I++V 
Sbjct: 118 GQAIMKKEAGTTATVAAPVGEYQVTIVEVK 147


>gi|311898109|dbj|BAJ30517.1| putative transcription elongation factor GreA [Kitasatospora setae
           KM-6054]
          Length = 165

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T   ++K++ E        R  I K I  AR  GDL ENA Y AAK+ Q   E R+ +
Sbjct: 10  WLTQDHYNKLKAEFDHLTGPWRIEIAKKIEAAREEGDLKENAGYHAAKDEQGKTEARIRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++ RA+V +    SG            + +  D   + +   +  D    + S  SP
Sbjct: 70  LSQLLERAKVGEAPADSGVVAPGMLVKVAFDGDEDDTMEFLLASREVTDGDIDVYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           + RA+IGK +G+      P G+K   +I +
Sbjct: 130 LGRAIIGKSVGEDAQYELPNGKKARVKITE 159


>gi|227494766|ref|ZP_03925082.1| transcription elongation factor GreA [Actinomyces coleocanis DSM
           15436]
 gi|226831766|gb|EEH64149.1| transcription elongation factor GreA [Actinomyces coleocanis DSM
           15436]
          Length = 159

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M + + +T + +D++++EL  R   +R  I   I  AR  GDL EN  Y AA++ Q +NE
Sbjct: 1   MSESLWLTQEAYDRLKEELEHRSTIKRQEIATKIDNARQEGDLKENGGYHAARDEQAMNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ +L NI+  A V       G   A    V   E                ++    + 
Sbjct: 61  TRINQLTNILRDAVVGATPADDGIVEA--GMVVTAEIMGSQSTFLLGSRMAGSEDDLEVY 118

Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           SI +PI +AL G ++G+ +S  AP G E   +IL 
Sbjct: 119 SIDAPIGQALNGHKVGETVSYFAPNGREIEVKILD 153


>gi|229815845|ref|ZP_04446169.1| hypothetical protein COLINT_02898 [Collinsella intestinalis DSM
           13280]
 gi|229808540|gb|EEP44318.1| hypothetical protein COLINT_02898 [Collinsella intestinalis DSM
           13280]
          Length = 156

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 54/153 (35%), Positives = 87/153 (56%), Gaps = 4/153 (2%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +I +T++G  K+++EL + + E+   I++ I EARA+GDLSENAEY AAKE Q  N  R+
Sbjct: 5   QIVLTAEGRKKLEEELAYLEGEKSREIVEHIKEARAFGDLSENAEYDAAKEDQARNAARI 64

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           AE+   +  A+  D    S   ++ G+ V+L++        + IVG  E +V    +S  
Sbjct: 65  AEIRATLANAQ--DAVAGSSMIVSIGSVVTLIDGEGEASD-FTIVGTTETNVLEHKISNE 121

Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
           SP+ RA+IG   G+ + V    G  + Y I ++
Sbjct: 122 SPVGRAIIGHGEGESVEVVLANGKTRVYTIAKI 154


>gi|327462009|gb|EGF08338.1| transcription elongation factor GreA [Streptococcus sanguinis
           SK1057]
 gi|328946834|gb|EGG40971.1| transcription elongation factor GreA [Streptococcus sanguinis
           SK1087]
 gi|332362238|gb|EGJ40038.1| transcription elongation factor GreA [Streptococcus sanguinis
           SK1056]
          Length = 160

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDAVAKDEVAIGKTVTIQEVGESEEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD  +V  P G    +I++V 
Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKIIKVE 157


>gi|116516490|ref|YP_816807.1| transcription elongation factor GreA [Streptococcus pneumoniae D39]
 gi|148984861|ref|ZP_01818114.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP3-BS71]
 gi|148992595|ref|ZP_01822263.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP9-BS68]
 gi|148997422|ref|ZP_01825027.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003267|ref|ZP_01828163.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007576|ref|ZP_01831211.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP18-BS74]
 gi|149011752|ref|ZP_01832948.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP19-BS75]
 gi|149021786|ref|ZP_01835793.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP23-BS72]
 gi|168484934|ref|ZP_02709879.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae CDC1873-00]
 gi|168487712|ref|ZP_02712220.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae CDC1087-00]
 gi|168488822|ref|ZP_02713021.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae SP195]
 gi|168491591|ref|ZP_02715734.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae CDC0288-04]
 gi|168493418|ref|ZP_02717561.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae CDC3059-06]
 gi|168577325|ref|ZP_02723096.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae MLV-016]
 gi|194397327|ref|YP_002038148.1| transcription elongation factor GreA [Streptococcus pneumoniae G54]
 gi|221232229|ref|YP_002511382.1| transcription elongation factor [Streptococcus pneumoniae ATCC
           700669]
 gi|225854961|ref|YP_002736473.1| transcription elongation factor GreA [Streptococcus pneumoniae JJA]
 gi|225857142|ref|YP_002738653.1| transcription elongation factor GreA [Streptococcus pneumoniae
           P1031]
 gi|225859274|ref|YP_002740784.1| transcription elongation factor GreA [Streptococcus pneumoniae
           70585]
 gi|225861350|ref|YP_002742859.1| transcription elongation factor GreA [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|237650199|ref|ZP_04524451.1| transcription elongation factor GreA [Streptococcus pneumoniae CCRI
           1974]
 gi|237820918|ref|ZP_04596763.1| transcription elongation factor GreA [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298230257|ref|ZP_06963938.1| transcription elongation factor GreA [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298254453|ref|ZP_06978039.1| transcription elongation factor GreA [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298503253|ref|YP_003725193.1| transcription elongation factor GreA [Streptococcus pneumoniae
           TCH8431/19A]
 gi|303255302|ref|ZP_07341372.1| transcription elongation factor GreA [Streptococcus pneumoniae
           BS455]
 gi|303260142|ref|ZP_07346114.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP-BS293]
 gi|303262532|ref|ZP_07348473.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP14-BS292]
 gi|303264934|ref|ZP_07350849.1| transcription elongation factor GreA [Streptococcus pneumoniae
           BS397]
 gi|303267244|ref|ZP_07353108.1| transcription elongation factor GreA [Streptococcus pneumoniae
           BS457]
 gi|303269554|ref|ZP_07355317.1| transcription elongation factor GreA [Streptococcus pneumoniae
           BS458]
 gi|307068161|ref|YP_003877127.1| transcription elongation factor [Streptococcus pneumoniae AP200]
 gi|307127722|ref|YP_003879753.1| transcription elongation factor GreA [Streptococcus pneumoniae
           670-6B]
 gi|73621019|sp|Q8DP42|GREA_STRR6 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|122277695|sp|Q04HS9|GREA_STRP2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|238690838|sp|B5E681|GREA_STRP4 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799568|sp|C1C8A8|GREA_STRP7 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799569|sp|B8ZLB8|GREA_STRPJ RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799571|sp|C1CFA2|GREA_STRZJ RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799572|sp|C1CLL5|GREA_STRZP RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799573|sp|C1CSD7|GREA_STRZT RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|116077066|gb|ABJ54786.1| transcription elongation factor GreA [Streptococcus pneumoniae D39]
 gi|147756477|gb|EDK63518.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758727|gb|EDK65724.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760935|gb|EDK67905.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP18-BS74]
 gi|147764183|gb|EDK71115.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP19-BS75]
 gi|147922883|gb|EDK73999.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP3-BS71]
 gi|147928612|gb|EDK79626.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP9-BS68]
 gi|147930022|gb|EDK81009.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP23-BS72]
 gi|172041918|gb|EDT49964.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae CDC1873-00]
 gi|183569530|gb|EDT90058.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae CDC1087-00]
 gi|183572632|gb|EDT93160.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae SP195]
 gi|183574144|gb|EDT94672.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae CDC0288-04]
 gi|183576363|gb|EDT96891.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae CDC3059-06]
 gi|183577158|gb|EDT97686.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae MLV-016]
 gi|194356994|gb|ACF55442.1| transcription elongation factor GreA [Streptococcus pneumoniae G54]
 gi|220674690|emb|CAR69263.1| transcription elongation factor [Streptococcus pneumoniae ATCC
           700669]
 gi|225720296|gb|ACO16150.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae 70585]
 gi|225722497|gb|ACO18350.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae JJA]
 gi|225724300|gb|ACO20152.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae P1031]
 gi|225726751|gb|ACO22602.1| transcription elongation factor GreA (Transcript cleavage factor
           greA)(General stress protein 20M) (GSP20M)
           [Streptococcus pneumoniae Taiwan19F-14]
 gi|298238848|gb|ADI69979.1| transcription elongation factor GreA [Streptococcus pneumoniae
           TCH8431/19A]
 gi|301794529|emb|CBW36971.1| transcription elongation factor [Streptococcus pneumoniae INV104]
 gi|301800352|emb|CBW32982.1| transcription elongation factor [Streptococcus pneumoniae OXC141]
 gi|301802237|emb|CBW34988.1| transcription elongation factor [Streptococcus pneumoniae INV200]
 gi|302597670|gb|EFL64746.1| transcription elongation factor GreA [Streptococcus pneumoniae
           BS455]
 gi|302636249|gb|EFL66743.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP14-BS292]
 gi|302638639|gb|EFL69102.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP-BS293]
 gi|302640898|gb|EFL71282.1| transcription elongation factor GreA [Streptococcus pneumoniae
           BS458]
 gi|302643209|gb|EFL73492.1| transcription elongation factor GreA [Streptococcus pneumoniae
           BS457]
 gi|302645453|gb|EFL75685.1| transcription elongation factor GreA [Streptococcus pneumoniae
           BS397]
 gi|306409698|gb|ADM85125.1| Transcription elongation factor [Streptococcus pneumoniae AP200]
 gi|306484784|gb|ADM91653.1| transcription elongation factor GreA [Streptococcus pneumoniae
           670-6B]
 gi|327389702|gb|EGE88047.1| transcription elongation factor GreA domain protein [Streptococcus
           pneumoniae GA04375]
 gi|332072310|gb|EGI82793.1| transcription elongation factor GreA domain protein [Streptococcus
           pneumoniae GA17570]
 gi|332073853|gb|EGI84331.1| transcription elongation factor GreA domain protein [Streptococcus
           pneumoniae GA41301]
 gi|332074270|gb|EGI84747.1| transcription elongation factor GreA domain protein [Streptococcus
           pneumoniae GA17545]
 gi|332199561|gb|EGJ13636.1| transcription elongation factor GreA domain protein [Streptococcus
           pneumoniae GA41317]
 gi|332200079|gb|EGJ14152.1| transcription elongation factor GreA domain protein [Streptococcus
           pneumoniae GA47368]
 gi|332200957|gb|EGJ15028.1| transcription elongation factor GreA domain protein [Streptococcus
           pneumoniae GA47901]
          Length = 160

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD  ++  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157


>gi|85708976|ref|ZP_01040042.1| transcription elongation factor [Erythrobacter sp. NAP1]
 gi|85690510|gb|EAQ30513.1| transcription elongation factor [Erythrobacter sp. NAP1]
          Length = 147

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 2/147 (1%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
              ++         ERP I++ +S A   GD SEN +Y   ++     +  +  L   + 
Sbjct: 1   MAALKARYDHLLGTERPEIVEIVSWAAGNGDRSENGDYIYGRKRMREIDRELGYLSRRMK 60

Query: 72  RAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
              V+D +      R+ FGATV L +++   ++   IVGD E D   GLV  SSPIA+AL
Sbjct: 61  ACRVVDPANQPDRSRVFFGATVELADEDDE-RRTVTIVGDDEQDAGKGLVGWSSPIAKAL 119

Query: 131 IGKELGDIISVNAPGGEKTYEILQVLW 157
            G  +GD+  V  PGG K +E++ + +
Sbjct: 120 KGASVGDLRIVKLPGGLKEWEVMGIDY 146


>gi|45656682|ref|YP_000768.1| transcript cleavage factor/unknown domain fusion protein
           [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
 gi|294828301|ref|NP_713558.2| transcript cleavage factor/unknown domain fusion protein
           [Leptospira interrogans serovar Lai str. 56601]
 gi|45599918|gb|AAS69405.1| transcriptional elongation factor [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|293386153|gb|AAN50576.2| transcript cleavage factor/unknown domain fusion protein
           [Leptospira interrogans serovar Lai str. 56601]
          Length = 926

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 52/151 (34%), Positives = 84/151 (55%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           I VT +  ++ ++E       E P   K I EA+  GDL ENAEY+AA E Q   +  + 
Sbjct: 766 ILVTRRALNRKKEEFEHLLNVEMPENSKDIGEAQERGDLRENAEYKAAMEKQVQLQAAIK 825

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE  I  A ++D++ +  D+I  G T  L  +++G+   Y I+G  +AD +  ++S  S
Sbjct: 826 RLEAEIKSAIILDLTNVKTDKINIGVTAKLKNESTGEVVAYSILGAWDADTEKHIISYQS 885

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+A++L+GK+ GD   +N  G E  Y +L +
Sbjct: 886 PLAKSLLGKKTGDSAVLNLTGAETRYTVLDI 916


>gi|225164446|ref|ZP_03726704.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2]
 gi|224800944|gb|EEG19282.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2]
          Length = 617

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 82/153 (53%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +++ V+ + +++ ++E      ++ P   KAI+ AR +GDL EN+EY+ AK+ Q +   +
Sbjct: 458 EQLLVSRESYERKREEYETIVSKKIPENSKAIATAREHGDLKENSEYKMAKQDQQVLMAQ 517

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
            A +E  ++RA + D      D I  G  V L   ++G    Y ++G  ++  +  +++ 
Sbjct: 518 KALIEKELSRARITDFKDAPTDSIGVGNIVGLKIGSTGKTATYTLLGAWDSIPEKNIIAY 577

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +P+ + L+ K +GD + V     E+TY +  +
Sbjct: 578 KTPLGQGLLTKRVGDTVQVKIGSAEETYTVTSI 610


>gi|306824895|ref|ZP_07458239.1| transcription elongation factor GreA [Streptococcus sp. oral taxon
           071 str. 73H25AP]
 gi|304433106|gb|EFM36078.1| transcription elongation factor GreA [Streptococcus sp. oral taxon
           071 str. 73H25AP]
          Length = 160

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 63/157 (40%), Positives = 99/157 (63%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +   K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKKKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEEEEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GDI+++  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKTGDIVTIETPVGSYDVKILKVE 157


>gi|297584721|ref|YP_003700501.1| transcription elongation factor GreA [Bacillus selenitireducens
           MLS10]
 gi|297143178|gb|ADH99935.1| transcription elongation factor GreA [Bacillus selenitireducens
           MLS10]
          Length = 156

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 64/153 (41%), Positives = 99/153 (64%), Gaps = 1/153 (0%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +K  +T +G  K+++EL     E R  +++ I  AR++GDLSEN+EY +AKE Q   EGR
Sbjct: 4   EKHYMTEEGKKKLEEELEQLITERRKEVVERIKVARSFGDLSENSEYDSAKEEQAFVEGR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + +LE +I  AE+I+    S  +++ G  V+ VE   G+++ Y IVG  EAD   G +S 
Sbjct: 64  IQQLETMIRNAEIIEEDKNS-SKVSLGKKVTFVEIPDGEEEEYVIVGRAEADPLDGKISN 122

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SP+A++LIGKE+GD ++V+ PGG+ T +I  V
Sbjct: 123 ESPMAQSLIGKEIGDQVTVSTPGGDMTVKITAV 155


>gi|116333642|ref|YP_795169.1| transcription elongation factor [Lactobacillus brevis ATCC 367]
 gi|116098989|gb|ABJ64138.1| transcription elongation factor GreA [Lactobacillus brevis ATCC
           367]
          Length = 132

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 82/131 (62%), Gaps = 1/131 (0%)

Query: 25  EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
            +RP++I  I  AR+YGDLSEN+EY++AK+ Q++ E R++ +E ++  A++ID      D
Sbjct: 2   VQRPKVIDRIKIARSYGDLSENSEYESAKDEQSMLETRISTVERMLQYAQIIDNDDTDKD 61

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            I  G  V+  E +   +  Y IVG  EAD  SG +S  SPIA+ L+G  +G+ ++   P
Sbjct: 62  EITVGKKVTFQEDDDEPE-EYTIVGAAEADPMSGKISNDSPIAKGLLGHRVGETVTFPTP 120

Query: 145 GGEKTYEILQV 155
           GG+ T +++ V
Sbjct: 121 GGDMTVKVIAV 131


>gi|194467226|ref|ZP_03073213.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23]
 gi|194454262|gb|EDX43159.1| transcription elongation factor GreA [Lactobacillus reuteri 100-23]
          Length = 165

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G+ +I++++   QQ +RP  I+ +  ARA GDLSEN EY  AK      E R+  L
Sbjct: 18  MTANGYHEIEEQIAKLQQ-QRPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRYL 76

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AE++         I  G TV++  ++  +++ Y IVG QEAD+    +S  SP+
Sbjct: 77  NKQLQYAEIVTPKND--HTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +AL+ K  G  ++V AP      +I++V 
Sbjct: 135 GQALLHKTAGTTVTVEAPQSLYKVKIVKVE 164


>gi|15901363|ref|NP_345967.1| transcription elongation factor GreA [Streptococcus pneumoniae
           TIGR4]
 gi|111658360|ref|ZP_01409047.1| hypothetical protein SpneT_02000439 [Streptococcus pneumoniae
           TIGR4]
 gi|148988561|ref|ZP_01819994.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP6-BS73]
 gi|25453002|sp|Q97PT2|GREA_STRPN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|14973006|gb|AAK75607.1| transcription elongation factor GreA [Streptococcus pneumoniae
           TIGR4]
 gi|147925762|gb|EDK76837.1| transcription elongation factor GreA [Streptococcus pneumoniae
           SP6-BS73]
          Length = 160

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 97/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ D +A G TV++ E    +++ Y IVG   AD   G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFVGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD  ++  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 157


>gi|328479717|gb|EGF48865.1| transcription elongation factor GreA [Lactobacillus rhamnosus MTCC
           5462]
          Length = 134

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 55/134 (41%), Positives = 91/134 (67%), Gaps = 2/134 (1%)

Query: 23  QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
           + ++RP +I+ I  AR +GDLSEN+EY+AAK+ Q+  E R+  ++ ++  AE+ID   ++
Sbjct: 2   KTKKRPEVIERIKVARGFGDLSENSEYEAAKDEQSTLENRIVTIQTMLRYAEIIDAKAVA 61

Query: 83  GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
            + ++ G  V+  E   GD++ Y+IVG  EAD  +G +S  SPIA+ LIG+++GD +++N
Sbjct: 62  KNEVSIGKKVTFEED--GDEETYEIVGAAEADAFNGKISNESPIAQGLIGRKVGDQVTIN 119

Query: 143 APGGEKTYEILQVL 156
            PGGE T +I +V 
Sbjct: 120 TPGGEMTVKITKVE 133


>gi|261855687|ref|YP_003262970.1| transcription elongation factor GreB [Halothiobacillus neapolitanus
           c2]
 gi|261836156|gb|ACX95923.1| transcription elongation factor GreB [Halothiobacillus neapolitanus
           c2]
          Length = 175

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 6/161 (3%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +    ++++G  ++  EL    + ER  +++A+SEA A GD SENAEY   K      + 
Sbjct: 1   MSTAVISARGHARLLAELDQLWRVERRLVVQAVSEAAALGDRSENAEYIYGKRRLREIDR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+  L+  +   +V+       +++ FGA ++L+      ++   +VG  E D  + L+S
Sbjct: 61  RIRYLQKRLGDIKVVRQPPTDMNKVYFGARITLL-YADDREQTVCLVGPDEIDPANQLIS 119

Query: 122 ISSPIARALIGKELGDIISVNAPGGE-----KTYEILQVLW 157
           I SP+A+A++GK L   + +  P           EI+ + +
Sbjct: 120 IDSPLAKAVLGKALDAEVVLFLPSETSTPRRVHAEIIAIEY 160


>gi|15895695|ref|NP_349044.1| transcription elongation factor, greA [Clostridium acetobutylicum
           ATCC 824]
 gi|15025446|gb|AAK80384.1|AE007743_6 Transcription elongation factor, greA [Clostridium acetobutylicum
           ATCC 824]
 gi|325509845|gb|ADZ21481.1| Transcription elongation factor, greA [Clostridium acetobutylicum
           EA 2018]
          Length = 154

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 89/155 (57%), Gaps = 2/155 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T  G  K+++EL + +  +R  I +A+  AR+ GDLSENA+Y AAK+ Q++NE
Sbjct: 1   MSSKI-LTESGKKKLEEELEYLKTVKRAEIKEALKFARSQGDLSENADYSAAKDDQSMNE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ E+E+I+    V++ S+ + +         +   ++ + +   +V   E+D+++  V
Sbjct: 60  TRIQEIEDILKSCTVVE-SSENENVFDLNKKALVKFCDTDETEEVTLVSSVESDIKNMKV 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SI SP+ +AL   EL     V +P G    E+L++
Sbjct: 119 SIDSPLGKALYKSELNKRTLVQSPDGSYEVEVLKI 153


>gi|15903412|ref|NP_358962.1| transcription elongation factor GreA [Streptococcus pneumoniae R6]
 gi|182684472|ref|YP_001836219.1| transcription elongation factor GreA [Streptococcus pneumoniae
           CGSP14]
 gi|15459017|gb|AAL00173.1| Transcription elongation factor GreA [Streptococcus pneumoniae R6]
 gi|182629806|gb|ACB90754.1| transcription elongation factor GreA [Streptococcus pneumoniae
           CGSP14]
          Length = 163

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 4   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 63

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 64  EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 123

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD  ++  P G    +IL+V 
Sbjct: 124 VSNESPIGQALIGKKTGDTATIETPVGSYDVKILKVE 160


>gi|331694808|ref|YP_004331047.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans
           CB1190]
 gi|326949497|gb|AEA23194.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans
           CB1190]
          Length = 163

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 3/152 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + FD+++ EL       RP I   I+  R  GDL EN  Y AA+E Q   E R+ +
Sbjct: 10  WLTQEAFDRLKNELDQLIAN-RPVIAAEINARREEGDLKENGGYHAAREEQGQQEARIRQ 68

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ ++  A+V    T + D  + G  +++   +   ++      ++ +     ++S +SP
Sbjct: 69  LQELLRTAQVGTAPTST-DVASPGTVLTVRYDDDDTEQVLLGSREEGSHGDLQVISPNSP 127

Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVL 156
           +  AL+G ++G+    + P GG     ++ V 
Sbjct: 128 LGAALLGAKVGETREYSLPDGGTMKVTLVAVE 159


>gi|325696362|gb|EGD38253.1| transcription elongation factor GreA [Streptococcus sanguinis
           SK160]
          Length = 160

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDAVAKDEVAIGKTVTIQEVGESEEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD  +V  P G    +I++V 
Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKIIEVE 157


>gi|187934761|ref|YP_001886308.1| transcription elongation factor GreA [Clostridium botulinum B str.
           Eklund 17B]
 gi|187722914|gb|ACD24135.1| transcription elongation factor GreA [Clostridium botulinum B str.
           Eklund 17B]
          Length = 154

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 78/151 (51%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T +    +++EL +R   +R  I K    A A+GD SENAEY+ A      N+ R+ 
Sbjct: 3   NQLTEENMKNLREELDYRLTVKRAEIAKEKLVAAAHGDRSENAEYKEACANYRENDNRIQ 62

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L N+I+ A +ID  T+    +   +   +      D+    +V   + D ++  +SI S
Sbjct: 63  YLMNMISTATIIDSETIDKSVLGINSKAKIKFIEDEDETIITLVTTMDLDPEAMRISIES 122

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
            + +AL GK+ GDI+ VNAPG     EIL++
Sbjct: 123 DLGKALTGKKQGDIVEVNAPGENYKVEILEI 153


>gi|227364132|ref|ZP_03848230.1| transcription elongation factor GreA [Lactobacillus reuteri MM2-3]
 gi|325683336|ref|ZP_08162852.1| transcription elongation factor [Lactobacillus reuteri MM4-1A]
 gi|227070857|gb|EEI09182.1| transcription elongation factor GreA [Lactobacillus reuteri MM2-3]
 gi|324977686|gb|EGC14637.1| transcription elongation factor [Lactobacillus reuteri MM4-1A]
          Length = 192

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G+ +I++++   QQ +RP  I+ +  ARA GDLSEN EY  AK      E R+  L
Sbjct: 45  MTANGYHEIEEQIAKLQQ-QRPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRYL 103

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AE++         I  G TV++  ++  +++ Y IVG QEAD+    +S  SP+
Sbjct: 104 NKQLQYAEIVTPKND--HTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSPL 161

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A++ +  G  ++V AP      +I++V 
Sbjct: 162 GQAILHQTAGTTVTVEAPQSSYKVKIVKVE 191


>gi|302874290|ref|YP_003842923.1| GreA/GreB family elongation factor [Clostridium cellulovorans 743B]
 gi|307689446|ref|ZP_07631892.1| transcription elongation factor GreA [Clostridium cellulovorans
           743B]
 gi|302577147|gb|ADL51159.1| GreA/GreB family elongation factor [Clostridium cellulovorans 743B]
          Length = 154

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 2/155 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +K  +T +   K+Q+EL +R   +R  I K    A A+GD SENAEY+ A      N+
Sbjct: 1   MNNK--LTLENMKKLQEELEYRMTVKRAEIAKEKLIAAAHGDRSENAEYKEACANYREND 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L  +I+ A +ID  T+    +       +       +    +V   + D ++  +
Sbjct: 59  NRIQYLLTMISTATLIDEHTVDKSTLGINTKAKVRFIEDDYEDVLTLVTTMDLDPENMYI 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SI S + +AL GK+ G+I++VNAP    T EIL++
Sbjct: 119 SIESDLGKALSGKKAGEIVTVNAPEDIYTVEILEI 153


>gi|159898200|ref|YP_001544447.1| transcription elongation factor GreA [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159891239|gb|ABX04319.1| transcription elongation factor GreA [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 155

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 84/157 (53%), Gaps = 3/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK   +T +G  K++ E+   +   R  + + I +A+  GD+SE+ EY+ AK  Q   
Sbjct: 1   MTDKPFYLTKEGRAKLEAEIEELETTGRMEVAERIRQAKELGDISESGEYEDAKNKQAFL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+ E+ NI+  A++I+    + +    G++V++     G+++ + IVG  EA  + G 
Sbjct: 61  EGRIREIRNILNNAQMIEEDGDNREV-RLGSSVTIR-YEDGEEEEWMIVGAAEASPRDGK 118

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  SPI  AL+GK      + + P G     +L++ 
Sbjct: 119 ISNESPIGSALMGKRARQKATASTPSGIMKMTVLKIR 155


>gi|184154324|ref|YP_001842665.1| transcription elongation factor GreA [Lactobacillus reuteri JCM
           1112]
 gi|183225668|dbj|BAG26185.1| transcription elongation factor GreA [Lactobacillus reuteri JCM
           1112]
          Length = 156

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G+ +I++++   QQ +RP  I+ +  ARA GDLSEN EY  AK      E R+  L
Sbjct: 9   MTANGYHEIEEQIAKLQQ-QRPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRYL 67

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AE++         I  G TV++  ++  +++ Y IVG QEAD+    +S  SP+
Sbjct: 68  NKQLQYAEIVTPKND--HTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSPL 125

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A++ +  G  ++V AP      +I++V 
Sbjct: 126 GQAILHQTAGTTVTVEAPQSSYKVKIVKVE 155


>gi|220912010|ref|YP_002487319.1| transcription elongation factor GreA [Arthrobacter chlorophenolicus
           A6]
 gi|219858888|gb|ACL39230.1| transcription elongation factor GreA [Arthrobacter chlorophenolicus
           A6]
          Length = 164

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 5/151 (3%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + FD+++ EL       R  I++ I  AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 11  WLTQEAFDRLKAELDQLSGPGRAEIVQKIDAARQEGDLKENGGYHAAKEEQGKIEARIRQ 70

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124
           L  ++  A V +     G        V+ +   +GD++ + +   + A D    + S  S
Sbjct: 71  LTVLLRDAHVGESPADDGIVEPGMIVVARI---AGDEETFLLGSREIAGDSDLDVFSEKS 127

Query: 125 PIARALIGKELGDIISVNAPGGE-KTYEILQ 154
           P+  A++G + G+ +S  AP G+    EIL 
Sbjct: 128 PLGSAILGHKEGETLSYVAPNGKDIKVEILS 158


>gi|239943845|ref|ZP_04695782.1| transcription elongation factor GreA [Streptomyces roseosporus NRRL
           15998]
 gi|239990301|ref|ZP_04710965.1| transcription elongation factor GreA [Streptomyces roseosporus NRRL
           11379]
 gi|291447308|ref|ZP_06586698.1| transcription elongation factor [Streptomyces roseosporus NRRL
           15998]
 gi|291350255|gb|EFE77159.1| transcription elongation factor [Streptomyces roseosporus NRRL
           15998]
          Length = 165

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 63/150 (42%), Gaps = 1/150 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +++++ EL +     R  I   I+ AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAYNQLKAELEYLSGPARTEIAVKIAAAREEGDLRENGGYHAAKEEQGKMELRVRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V +     G            + +  D   + +   + A  +    S  SP
Sbjct: 70  LTQLLEHAKVGEAPADDGVVEPGMVVTIAFDGDEDDTLTFLLASREYASTEIETYSPQSP 129

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQ 154
           +   + GK  GD      P G   + +IL 
Sbjct: 130 LGLGVNGKRTGDDADYELPNGRTASVKILA 159


>gi|47459270|ref|YP_016132.1| transcription elongation factor [Mycoplasma mobile 163K]
 gi|47458599|gb|AAT27921.1| transcription elongation factor [Mycoplasma mobile 163K]
          Length = 174

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 53/151 (35%), Positives = 87/151 (57%), Gaps = 2/151 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K+ +T +  +  + EL      ERP+II+ I +ARA GDLSEN+EY +A+E Q   E R+
Sbjct: 22  KLYLTLESVETYKTELNNLINVERPKIIEEIKDARAQGDLSENSEYDSAREKQGQIEDRI 81

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            E+E I+     I  ++ S  ++  G+ V L   ++  +   +IVG  E D     +S S
Sbjct: 82  KEIEYILENYTEIQNASKS-KKVTIGSKVLLKRIDNKKQFEVKIVGTLETDPFLNKISYS 140

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           SPI++ ++G ++GD+  +NAP  +   EIL+
Sbjct: 141 SPISQGIMGSKIGDVREINAPT-KYEVEILK 170


>gi|163841781|ref|YP_001626186.1| transcription elongation factor [Renibacterium salmoninarum ATCC
           33209]
 gi|162955257|gb|ABY24772.1| transcription elongation factor [Renibacterium salmoninarum ATCC
           33209]
          Length = 163

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 73/152 (48%), Gaps = 7/152 (4%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + F+++Q EL       R  ++K I +AR+ GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQEAFNRLQGELEQLSGPGRAEVVKKIEQARSEGDLKENGGYHAAKEEQGKIEARIRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSIS 123
           L  ++  A V + S      +  G  V        ++K   ++G +E   D    + S  
Sbjct: 70  LTELLRDAHVGE-SPEDNGVVEPGMLVVA---KIANEKTTFLLGSREVAGDTDLDVFSEK 125

Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
           SP+  A+ G + GD IS  AP G+    E++ 
Sbjct: 126 SPLGAAIQGHKAGDKISYTAPNGKDIKVEVIS 157


>gi|218960396|ref|YP_001740171.1| putative transcription elongation factor [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729053|emb|CAO79964.1| putative transcription elongation factor [Candidatus Cloacamonas
           acidaminovorans]
          Length = 159

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 85/154 (55%), Gaps = 5/154 (3%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G  ++Q+ +      ERP +IKA++ AR +GDLSENAEY+AA+E Q   +  +  L
Sbjct: 7   ITKTGMQRLQKRINELLA-ERPEVIKAVAIAREFGDLSENAEYKAARERQRAIDNEIDYL 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----LVSI 122
                  +VID S    D + FG      + N+ +   Y +VG +E +  +      VSI
Sbjct: 66  RRRSANLKVIDTSEFPKDMVRFGTYCVAEDINTKECICYHLVGPEELNYYNEEGIQEVSI 125

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SPI +AL+ K++G+I  V AP GE+  +I ++ 
Sbjct: 126 VSPIGKALLSKKIGEIAIVKAPIGERKLKIREIK 159


>gi|317124131|ref|YP_004098243.1| transcription elongation factor GreA [Intrasporangium calvum DSM
           43043]
 gi|315588219|gb|ADU47516.1| transcription elongation factor GreA [Intrasporangium calvum DSM
           43043]
          Length = 160

 Score =  104 bits (258), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 4/149 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T + +D+++ EL       R  I + I EAR  GDL EN  Y AA+E Q   E R+ +L
Sbjct: 9   LTKEAYDRLKAELDQLTGVGRIEIARKIEEAREEGDLKENGGYHAAREEQGKMEARIRQL 68

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           ++++  A V + +      +  G  V++  +  G+++ + +   + AD    + S  SP+
Sbjct: 69  QDLLHNAVVGE-TPPDDGVVEPGMVVTV--ELFGEQEKFLLGSREIADDDLQVFSEKSPM 125

Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQ 154
             A+ GK +GD  S  AP G     +IL 
Sbjct: 126 GAAVNGKSVGDTTSYEAPTGKTIEVKILD 154


>gi|152002511|dbj|BAF73535.1| transcription elongation factor [Onion yellows phytoplasma OY-W]
          Length = 156

 Score =  104 bits (258), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 89/156 (57%), Gaps = 4/156 (2%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +KI  +T  G  K+++EL + ++ +R   ++A+ E R  GDLSENA+Y AA+  Q L 
Sbjct: 1   MNNKIYELTQSGIKKLKKELTFLKEVKRKENLEALKEEREQGDLSENADYDAARNEQTLI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R++E++NI+    V+ +S      ++ G  VSL   ++  ++  ++V   EAD  +  
Sbjct: 61  EHRISEIQNILKNVRVVKVSKE--REVSIGKKVSLELLHTKQQQEIELVSTLEADPFANK 118

Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           +SI SP+ + + G ++GD++ V    G     +I+ 
Sbjct: 119 ISIESPLGQNIKGHQIGDVVFVTGETGNTFRVKIVD 154


>gi|308189955|ref|YP_003922886.1| transcription elongation factor [Mycoplasma fermentans JER]
 gi|319777236|ref|YP_004136887.1| transcription elongation factor [Mycoplasma fermentans M64]
 gi|238809906|dbj|BAH69696.1| hypothetical protein [Mycoplasma fermentans PG18]
 gi|307624697|gb|ADN69002.1| transcription elongation factor [Mycoplasma fermentans JER]
 gi|318038311|gb|ADV34510.1| Transcription elongation factor [Mycoplasma fermentans M64]
          Length = 163

 Score =  104 bits (258), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/157 (33%), Positives = 89/157 (56%), Gaps = 3/157 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KI +  +  +K Q E     + ERP I  A+ EARA GDLSENAEY AA++ Q + E R
Sbjct: 7   EKIILAKETLEKYQAEYEHLIKVERPEIQAALKEARAQGDLSENAEYDAARDRQGIVEAR 66

Query: 63  MAELENIITRAEVIDISTMSGDRIA--FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           + ELE I+  AEVI+ +     ++    GATV  +   +  +   +I+G  +++   G +
Sbjct: 67  IVELEGILANAEVIETNQNKKGKLKAGIGATVKYLNLKTNKEITVKIMGIHDSNPMEGNI 126

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S  SP+A+A++  + G  + V+ P  + + +IL + +
Sbjct: 127 SNESPVAQAIMEGDEGATVEVDVPN-KYSIKILSIQY 162


>gi|294155490|ref|YP_003559874.1| transcription elongation factor GreA [Mycoplasma crocodyli MP145]
 gi|291600011|gb|ADE19507.1| transcription elongation factor GreA [Mycoplasma crocodyli MP145]
          Length = 160

 Score =  104 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 54/153 (35%), Positives = 89/153 (58%), Gaps = 3/153 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KI +  +  +K ++E       ERP I  A+ +ARA GDLSENAEY AA++ Q + EGR
Sbjct: 8   EKIFLAKETLEKYKKEYDHLVNVERPAIQAALKDARAQGDLSENAEYDAARDKQGVIEGR 67

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELE+I+ +A +I+ S     +I  G+TV+        +    I+G  +A+     +S 
Sbjct: 68  ITELESILDKAVIIETSKD--GKIGIGSTVTYFSHLDKQQHIVTIMGSHDANPFENKISN 125

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SP+A A++ +E G+ I V+AP  +   +IL++
Sbjct: 126 ESPLAVAMLDREKGEKIEVDAPS-KYMIDILEI 157


>gi|326381820|ref|ZP_08203513.1| transcription elongation factor GreA [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326199246|gb|EGD56427.1| transcription elongation factor GreA [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 162

 Score =  104 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 74/150 (49%), Gaps = 2/150 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +D+++ EL       RP I   I+E R  GDL EN  Y AA+E Q   E R+ +
Sbjct: 8   WLTPESYDRLKGELDSLIAN-RPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQ 66

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L++++ +A+V +    SG  +         + +  DK+ + I   +E      + S SSP
Sbjct: 67  LQDLLNKAKVGEAPKQSGVALPGSVVTVYYDGDESDKETFLIATREEGSGDIEIYSPSSP 126

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQ 154
           +  ALI  ++G+  +   P G E +  ++ 
Sbjct: 127 LGAALIDAKVGESRTYTVPSGAEISVTLVS 156


>gi|330836574|ref|YP_004411215.1| Transcription elongation factor, GreA/GreB, N-terminal protein
           [Spirochaeta coccoides DSM 17374]
 gi|329748477|gb|AEC01833.1| Transcription elongation factor, GreA/GreB, N-terminal protein
           [Spirochaeta coccoides DSM 17374]
          Length = 897

 Score =  103 bits (257), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 69/149 (46%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           T    D  + EL      + P + K I EAR  GDL EN+EY+  KE Q L   ++ +L 
Sbjct: 745 TQASLDAKRAELDKIMNIDIPEVAKEIGEARELGDLRENSEYKYGKEKQTLLNAQIKKLL 804

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             I RA+VI    +   +  FG  +SL +        Y ++G  E++    ++S  +P+ 
Sbjct: 805 EEIDRAQVIQPGAVDTSKTGFGTRISLHDNIEDKDVVYTLMGPWESEPSKNILSFQAPLG 864

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156
             L+ K +G   S      +  + +L++ 
Sbjct: 865 TQLMNKTVGQNFSFEINDKKYDFTVLKIE 893


>gi|189219263|ref|YP_001939904.1| transcription elongation factor GreA fused to uncharacterized
           associated domain [Methylacidiphilum infernorum V4]
 gi|189186121|gb|ACD83306.1| Transcription elongation factor GreA fused to uncharacterized
           associated domain [Methylacidiphilum infernorum V4]
          Length = 614

 Score =  103 bits (257), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 81/147 (55%), Gaps = 1/147 (0%)

Query: 10  KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
           +  ++ ++EL    +++ P   K I+ AR+YGDL EN EY+AAKE+Q +   R AELE++
Sbjct: 458 ESLEQKKKELDELVRKKIPENSKDIAHARSYGDLRENHEYKAAKEMQVVLMRRKAELESM 517

Query: 70  ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
           I+RA   D S +    +  G  VS  +  +    +  I+G  +++   G++S  +   ++
Sbjct: 518 ISRARATDFSNVDTTTVNIGTVVSYTDLKTNRTNSVAILGAWDSNPSKGIISYLAAFGQS 577

Query: 130 LIGKELGDIISVNAPGG-EKTYEILQV 155
           L+G + GD++ V+   G      I ++
Sbjct: 578 LLGHKTGDVLQVSLEDGITTEIRIDKI 604


>gi|118616090|ref|YP_904422.1| transcription elongation factor GreA [Mycobacterium ulcerans Agy99]
 gi|183984358|ref|YP_001852649.1| transcription elongation factor GreA [Mycobacterium marinum M]
 gi|118568200|gb|ABL02951.1| transcription elongation factor GreA [Mycobacterium ulcerans Agy99]
 gi|183177684|gb|ACC42794.1| transcription elongation factor GreA [Mycobacterium marinum M]
          Length = 164

 Score =  103 bits (257), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 9/162 (5%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T +  D+++ EL       RP I   I++ R  GDL EN  Y AA+E Q  
Sbjct: 1   MTDTQVTWLTQESHDRLKAELDHLIAN-RPIIAAEINDRREEGDLRENGGYHAAREEQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQ 116
            E R+ +L++++  A+V +    SG  +           +  D + + I   QE   D +
Sbjct: 60  QEARIRQLQDLLNNAKVGEAPKQSGIALPGSVVKVYYNGDQSDSETFLIATRQEGVNDGK 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
             + S +SP+  ALI  ++G+  S   P G     +++V  I
Sbjct: 120 LEVYSPNSPLGGALIDAKVGETRSYTVPNGS----VIEVTLI 157


>gi|300743808|ref|ZP_07072828.1| transcription elongation factor GreA [Rothia dentocariosa M567]
 gi|311113051|ref|YP_003984273.1| transcription elongation factor GreA [Rothia dentocariosa ATCC
           17931]
 gi|300380169|gb|EFJ76732.1| transcription elongation factor GreA [Rothia dentocariosa M567]
 gi|310944545|gb|ADP40839.1| transcription elongation factor GreA [Rothia dentocariosa ATCC
           17931]
          Length = 165

 Score =  103 bits (257), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/162 (28%), Positives = 78/162 (48%), Gaps = 7/162 (4%)

Query: 1   MVDKI--PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +     +T   +D++ QEL +     R  I+  I+ AR  GDL EN  Y AA++ Q  
Sbjct: 1   MAESNGAWLTQDAYDRLTQELEYLSGPYRQEIVDRIAAARDEGDLRENGGYHAARDEQGK 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE---ADV 115
           NE R+ +L++++  A+V D  +     +A G  +     +   K        +E   A+ 
Sbjct: 61  NEARINQLKHLLENAQVGDAPSDD-GVVALGMVIEAEVASRSMKFLLGSREIEETLPANS 119

Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
              + S  SP+  A++G + GD ++  AP G E T +I+ V 
Sbjct: 120 DLKVFSEKSPMGAAILGAKEGDEVTYLAPNGKELTAKIVSVK 161


>gi|15608220|ref|NP_215596.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           H37Rv]
 gi|15840516|ref|NP_335553.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           CDC1551]
 gi|31792271|ref|NP_854764.1| transcription elongation factor GreA [Mycobacterium bovis
           AF2122/97]
 gi|121637009|ref|YP_977232.1| transcription elongation factor GreA [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148660865|ref|YP_001282388.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           H37Ra]
 gi|148822289|ref|YP_001287043.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           F11]
 gi|167967359|ref|ZP_02549636.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           H37Ra]
 gi|215402903|ref|ZP_03415084.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           02_1987]
 gi|215410693|ref|ZP_03419501.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426369|ref|ZP_03424288.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           T92]
 gi|215429946|ref|ZP_03427865.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           EAS054]
 gi|215445235|ref|ZP_03431987.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           T85]
 gi|218752760|ref|ZP_03531556.1| transcription elongation factor GreA [Mycobacterium tuberculosis GM
           1503]
 gi|219556957|ref|ZP_03536033.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           T17]
 gi|224989482|ref|YP_002644169.1| putative transcription elongation factor [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253799884|ref|YP_003032885.1| transcription elongation factor greA [Mycobacterium tuberculosis
           KZN 1435]
 gi|254363991|ref|ZP_04980037.1| transcription elongation factor greA (transcript cleavage factor
           greA ) [Mycobacterium tuberculosis str. Haarlem]
 gi|254550071|ref|ZP_05140518.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260186001|ref|ZP_05763475.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           CPHL_A]
 gi|260200115|ref|ZP_05767606.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           T46]
 gi|260204309|ref|ZP_05771800.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           K85]
 gi|289442507|ref|ZP_06432251.1| transcription elongation factor greA [Mycobacterium tuberculosis
           T46]
 gi|289446666|ref|ZP_06436410.1| transcription elongation factor greA [Mycobacterium tuberculosis
           CPHL_A]
 gi|289555137|ref|ZP_06444347.1| transcription elongation factor greA [Mycobacterium tuberculosis
           KZN 605]
 gi|289569068|ref|ZP_06449295.1| transcription elongation factor greA [Mycobacterium tuberculosis
           T17]
 gi|289573723|ref|ZP_06453950.1| transcription elongation factor greA [Mycobacterium tuberculosis
           K85]
 gi|289744820|ref|ZP_06504198.1| transcription elongation factor greA [Mycobacterium tuberculosis
           02_1987]
 gi|289749613|ref|ZP_06508991.1| transcription elongation factor greA [Mycobacterium tuberculosis
           T92]
 gi|289753143|ref|ZP_06512521.1| transcription elongation factor greA [Mycobacterium tuberculosis
           EAS054]
 gi|289757165|ref|ZP_06516543.1| transcription elongation factor greA [Mycobacterium tuberculosis
           T85]
 gi|289761218|ref|ZP_06520596.1| transcription elongation factor greA (transcript cleavage factor
           greA) [Mycobacterium tuberculosis GM 1503]
 gi|294993263|ref|ZP_06798954.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           210]
 gi|297633615|ref|ZP_06951395.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           KZN 4207]
 gi|297730600|ref|ZP_06959718.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           KZN R506]
 gi|298524578|ref|ZP_07011987.1| transcription elongation factor greA [Mycobacterium tuberculosis
           94_M4241A]
 gi|306775228|ref|ZP_07413565.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu001]
 gi|306781857|ref|ZP_07420194.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu002]
 gi|306783784|ref|ZP_07422106.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu003]
 gi|306788143|ref|ZP_07426465.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu004]
 gi|306792476|ref|ZP_07430778.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu005]
 gi|306796872|ref|ZP_07435174.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu006]
 gi|306802759|ref|ZP_07439427.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu008]
 gi|306806942|ref|ZP_07443610.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu007]
 gi|306967143|ref|ZP_07479804.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu009]
 gi|306971331|ref|ZP_07483992.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu010]
 gi|307079059|ref|ZP_07488229.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu011]
 gi|307083622|ref|ZP_07492735.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu012]
 gi|313657927|ref|ZP_07814807.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           KZN V2475]
 gi|54037218|sp|P64280|GREA_MYCBO RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|54041328|sp|P64279|GREA_MYCTU RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|166200676|sp|A1KHL8|GREA_MYCBP RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|166200679|sp|A5U1C6|GREA_MYCTA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799563|sp|C1AM72|GREA_MYCBT RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|2896717|emb|CAA17196.1| PROBABLE TRANSCRIPTION ELONGATION FACTOR GREA (Transcript cleavage
           factor greA) [Mycobacterium tuberculosis H37Rv]
 gi|13880692|gb|AAK45367.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           CDC1551]
 gi|31617859|emb|CAD93969.1| PROBABLE TRANSCRIPTION ELONGATION FACTOR GREA (Transcript cleavage
           factor greA) [Mycobacterium bovis AF2122/97]
 gi|121492656|emb|CAL71125.1| Probable transcription elongation factor greA [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|134149505|gb|EBA41550.1| transcription elongation factor greA (transcript cleavage factor
           greA ) [Mycobacterium tuberculosis str. Haarlem]
 gi|148505017|gb|ABQ72826.1| transcription elongation factor GreA [Mycobacterium tuberculosis
           H37Ra]
 gi|148720816|gb|ABR05441.1| transcription elongation factor greA [Mycobacterium tuberculosis
           F11]
 gi|224772595|dbj|BAH25401.1| putative transcription elongation factor [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253321387|gb|ACT25990.1| transcription elongation factor greA [Mycobacterium tuberculosis
           KZN 1435]
 gi|289415426|gb|EFD12666.1| transcription elongation factor greA [Mycobacterium tuberculosis
           T46]
 gi|289419624|gb|EFD16825.1| transcription elongation factor greA [Mycobacterium tuberculosis
           CPHL_A]
 gi|289439769|gb|EFD22262.1| transcription elongation factor greA [Mycobacterium tuberculosis
           KZN 605]
 gi|289538154|gb|EFD42732.1| transcription elongation factor greA [Mycobacterium tuberculosis
           K85]
 gi|289542822|gb|EFD46470.1| transcription elongation factor greA [Mycobacterium tuberculosis
           T17]
 gi|289685348|gb|EFD52836.1| transcription elongation factor greA [Mycobacterium tuberculosis
           02_1987]
 gi|289690200|gb|EFD57629.1| transcription elongation factor greA [Mycobacterium tuberculosis
           T92]
 gi|289693730|gb|EFD61159.1| transcription elongation factor greA [Mycobacterium tuberculosis
           EAS054]
 gi|289708724|gb|EFD72740.1| transcription elongation factor greA (transcript cleavage factor
           greA) [Mycobacterium tuberculosis GM 1503]
 gi|289712729|gb|EFD76741.1| transcription elongation factor greA [Mycobacterium tuberculosis
           T85]
 gi|298494372|gb|EFI29666.1| transcription elongation factor greA [Mycobacterium tuberculosis
           94_M4241A]
 gi|308216254|gb|EFO75653.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu001]
 gi|308325405|gb|EFP14256.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu002]
 gi|308331446|gb|EFP20297.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu003]
 gi|308335256|gb|EFP24107.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu004]
 gi|308339062|gb|EFP27913.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu005]
 gi|308342739|gb|EFP31590.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu006]
 gi|308346614|gb|EFP35465.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu007]
 gi|308350538|gb|EFP39389.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu008]
 gi|308355188|gb|EFP44039.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu009]
 gi|308359143|gb|EFP47994.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu010]
 gi|308363058|gb|EFP51909.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu011]
 gi|308366711|gb|EFP55562.1| transcription elongation factor greA [Mycobacterium tuberculosis
           SUMu012]
 gi|323720471|gb|EGB29557.1| transcription elongation factor greA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904695|gb|EGE51628.1| transcription elongation factor greA [Mycobacterium tuberculosis
           W-148]
 gi|328459629|gb|AEB05052.1| transcription elongation factor greA [Mycobacterium tuberculosis
           KZN 4207]
          Length = 164

 Score =  103 bits (257), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T +  D+++ EL       RP I   I++ R  GDL EN  Y AA+E Q  
Sbjct: 1   MTDTQVTWLTQESHDRLKAELDQLIAN-RPVIAAEINDRREEGDLRENGGYHAAREEQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQ 116
            E R+ +L+++++ A+V +    SG  +           +  D + + I   QE  +D +
Sbjct: 60  QEARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYYNGDKSDSETFLIATRQEGVSDGK 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE 147
             + S +SP+  ALI  ++G+  S   P G 
Sbjct: 120 LEVYSPNSPLGGALIDAKVGETRSYTVPNGS 150


>gi|203287597|ref|YP_002222612.1| transcription elongation factor EF [Borrelia recurrentis A1]
 gi|201084817|gb|ACH94391.1| transcription elongation factor EF [Borrelia recurrentis A1]
          Length = 900

 Score =  103 bits (257), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 74/145 (51%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
             K Q+EL++ +  E P   K I +AR  GDL ENAEY +AKE Q     R+  L + I 
Sbjct: 751 LSKKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNTLMSEID 810

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VIDI  +    + FG  V+++ K++  +++Y I G  E++   G++S  SP    L+
Sbjct: 811 VAKVIDIKELQSSVVGFGTKVTMINKDTEREESYLIFGPWESNPDEGIISYKSPFGENLL 870

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
               GD +          Y + ++ 
Sbjct: 871 DSREGDSLDFVINNTHFQYYVKKIE 895


>gi|41407125|ref|NP_959961.1| transcription elongation factor GreA [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254774087|ref|ZP_05215603.1| transcription elongation factor GreA [Mycobacterium avium subsp.
           avium ATCC 25291]
 gi|41395476|gb|AAS03344.1| GreA [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|48928144|gb|AAT47750.1| probable transcription elongation factor G [Mycobacterium avium]
          Length = 164

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 6/159 (3%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T +  D+++ EL       RP I   I++ R  GDL EN  Y AA+E Q  
Sbjct: 1   MTDTSVTWLTQESHDRLKAELDQLIAN-RPVIAAEINDRREEGDLRENGGYHAAREEQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQ 116
            E R+ +L++++  A+V +    SG  +           +  D + + I   QE   D +
Sbjct: 60  QEARIRQLQDLLNNAKVGEAPKQSGVALPGSVVKVYYNGDKSDTETFLIATRQEGVNDGK 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             + S +SP+  ALI  ++G+  S   P G  T E+  V
Sbjct: 120 LEVYSPNSPLGGALIDAKVGETRSYTVPNGS-TVEVTLV 157


>gi|269925131|ref|YP_003321754.1| transcription elongation factor GreA [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269788791|gb|ACZ40932.1| transcription elongation factor GreA [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 159

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 5/157 (3%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +++ +T +G  ++++EL   +  ER +I   I EA+  GD+SE+ EY+ AK  Q   EGR
Sbjct: 5   ERVRLTEQGLKELREELERLRTVERAKISARIREAKEGGDISESGEYEDAKHSQAFLEGR 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG---L 119
           + ELE ++  AEVID S      +  G+ V++ E   G    Y IV   EA         
Sbjct: 65  IKELEKLLANAEVIDRSAQPAGTVGLGSKVTVEEN--GRTYTYTIVDGAEAGRGRDGEVR 122

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S  S +  AL+G+ +GD + V  P G+ T++IL V 
Sbjct: 123 ISSKSAVGSALLGRRVGDSVEVEVPAGKLTFKILSVE 159


>gi|119952935|ref|YP_945144.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
           turicatae 91E135]
 gi|119861706|gb|AAX17474.1| transcription elongation factor GreA [Borrelia turicatae 91E135]
          Length = 900

 Score =  103 bits (256), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 74/145 (51%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
             K Q+EL++ +  E P   K I +AR  GDL ENAEY +AKE Q     R+  L + I 
Sbjct: 751 LSKKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNSLMSEID 810

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V+++ K++  +++Y I G  E++   G++S  SP    L+
Sbjct: 811 FAKVIDTKELQSSVVGFGTKVTMINKDTKREESYLIFGPWESNPDEGIISYKSPFGENLL 870

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
             + GD +          Y + ++ 
Sbjct: 871 DAKEGDNLDFVINDTHFQYYVKKIE 895


>gi|118469204|ref|YP_889509.1| transcription elongation factor GreA [Mycobacterium smegmatis str.
           MC2 155]
 gi|166200678|sp|A0R2X1|GREA_MYCS2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|118170491|gb|ABK71387.1| transcription elongation factor GreA [Mycobacterium smegmatis str.
           MC2 155]
          Length = 164

 Score =  103 bits (256), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 9/160 (5%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T + FD+++ EL       RP I   I++ R  GDL EN  Y AA+E Q  
Sbjct: 1   MTDTQVTWLTQEAFDRLKAELDQLIAN-RPVIAAEINDRREEGDLRENGGYHAAREEQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQ 116
            E R+ +L+ ++  A+V +    SG  +         + +  D + + I   QE  +D +
Sbjct: 60  QEARIRQLQELLNNAKVGEAPKQSGVALPGSVVKVYYDDDENDTETFLIATRQEGISDGK 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             + S +SP+  AL+  ++G+  +   P G     +++V 
Sbjct: 120 LEVYSPNSPLGGALLDAKVGESRTYTVPSGN----VVKVT 155


>gi|154504438|ref|ZP_02041176.1| hypothetical protein RUMGNA_01942 [Ruminococcus gnavus ATCC 29149]
 gi|153795213|gb|EDN77633.1| hypothetical protein RUMGNA_01942 [Ruminococcus gnavus ATCC 29149]
          Length = 167

 Score =  103 bits (256), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 89/154 (57%), Gaps = 3/154 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +K  +T     KIQQE+  R+  ER  +I+A+ EAR++GDLSEN EY AAK+ +N NE
Sbjct: 1   MREK--LTQSDVKKIQQEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKEKNRNE 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LE ++  A +++  + + +      TV +  ++  + + Y+IV        +GL+
Sbjct: 59  SRIRYLERMLKTAVIVEDHSGADEVG-LNNTVQVYCEDDDELETYRIVTSVRGSSLNGLI 117

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           SI SPI +AL+G ++GD + V        Y +++
Sbjct: 118 SIESPIGKALLGHKVGDRVFVKVNDEFGYYVVIK 151


>gi|303232444|ref|ZP_07319136.1| putative transcription elongation factor GreA [Atopobium vaginae
           PB189-T1-4]
 gi|302481528|gb|EFL44596.1| putative transcription elongation factor GreA [Atopobium vaginae
           PB189-T1-4]
          Length = 157

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/158 (36%), Positives = 87/158 (55%), Gaps = 5/158 (3%)

Query: 2   VDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           +DK  + +TS+G  K+  EL WR+ E+   I++ + EAR +GDLSEN+EY AAKE Q+ N
Sbjct: 1   MDKKELILTSEGRQKLVDELTWREGEKHEEIVERLKEARGFGDLSENSEYDAAKEEQSQN 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ E+  I+  A+V++        ++ G  V L++   G    + IVG  E D  +  
Sbjct: 61  ESRINEIRQILATAKVVE-HMAGELTVSIGTKVKLIDDK-GKTNTFTIVGTTETDSLAHK 118

Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           +S  SP    LIG  +GD I    P G  K Y I ++ 
Sbjct: 119 ISNESPAGAELIGHVVGDSIEFATPAGKTKHYTITEIT 156


>gi|203284058|ref|YP_002221798.1| transcription elongation factor EF [Borrelia duttonii Ly]
 gi|201083501|gb|ACH93092.1| transcription elongation factor EF [Borrelia duttonii Ly]
          Length = 900

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 74/145 (51%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
             K Q+EL++ +  E P   K I +AR  GDL ENAEY +AKE Q     R+  L + I 
Sbjct: 751 LSKKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNTLMSEID 810

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VIDI  +    + FG  V+++ K++  +++Y I G  E++   G++S  SP    L+
Sbjct: 811 VAKVIDIKELQSSVVGFGTKVTMINKDTEREESYLIFGPWESNPDEGIISYKSPFGENLL 870

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
               GD +          Y + ++ 
Sbjct: 871 DSREGDSLDFVINDTHFQYYVKKIE 895


>gi|224534276|ref|ZP_03674854.1| transcription elongation factor GreA [Borrelia spielmanii A14S]
 gi|224514378|gb|EEF84694.1| transcription elongation factor GreA [Borrelia spielmanii A14S]
          Length = 900

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 73/145 (50%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL+  ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  + Y I+G  E++   G++S  SP    L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEITGKDETYLILGPWESNPDEGIISYKSPFGENLL 870

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
             + GD ++         Y + ++ 
Sbjct: 871 DSKEGDSLNFIINNTNFRYFVKKIE 895


>gi|187918011|ref|YP_001883574.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
           hermsii DAH]
 gi|119860859|gb|AAX16654.1| transcription elongation factor GreA [Borrelia hermsii DAH]
          Length = 901

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 73/145 (50%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
             K Q+EL++ +  E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 752 LSKKQKELQYLKDVEIPENSKEIGKARELGDLKENAEYHSAKERQQFLTKRLNSLMLEID 811

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+V+D   +    + FG  V+++ K++G ++ Y I G  E++   G++S  SP    L+
Sbjct: 812 VAKVVDTKELQSSVVGFGTKVTMINKDTGREEFYLIFGPWESNPDEGIISYKSPFGENLL 871

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
             + GD +          Y + ++ 
Sbjct: 872 DAKEGDNLDFVINDTRFQYYVKKIE 896


>gi|169834166|ref|YP_001694924.1| transcription elongation factor GreA [Streptococcus pneumoniae
           Hungary19A-6]
 gi|238688370|sp|B1ICT9|GREA_STRPI RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|168996668|gb|ACA37280.1| transcription elongation factor GreA [Streptococcus pneumoniae
           Hungary19A-6]
          Length = 160

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 96/157 (61%), Gaps = 1/157 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI + LIGK+ GD  ++  P G    +IL+V 
Sbjct: 121 VSNESPIGQDLIGKKTGDTATIETPVGSYDVKILKVE 157


>gi|313885264|ref|ZP_07819016.1| transcription elongation factor GreA [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619955|gb|EFR31392.1| transcription elongation factor GreA [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 159

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 68/159 (42%), Positives = 102/159 (64%), Gaps = 1/159 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K+  +T +G +K++ EL   +   R  II+ I  AR++GDLSEN+EY+AAK+ Q + 
Sbjct: 1   MDEKVYPMTLEGKEKLELELEDLKVNRRKEIIERIKIARSFGDLSENSEYEAAKDEQAML 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+A +EN+I  AE+ID   +  D ++ G  V+  E   GD+++Y IVG  EAD     
Sbjct: 61  EGRIATIENMIRFAEIIDDKHVDEDEVSLGRKVTFKELPDGDEESYIIVGSAEADPMEFK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           +S  SPIA++LIGK+LG I+S+ +PGG    EI  +  I
Sbjct: 121 ISNDSPIAKSLIGKKLGQIVSIESPGGAFDVEITNIEKI 159


>gi|321310951|ref|YP_004193280.1| transcription elongation factor GreA [Mycoplasma haemofelis str.
           Langford 1]
 gi|319802795|emb|CBY93441.1| transcription elongation factor GreA [Mycoplasma haemofelis str.
           Langford 1]
          Length = 157

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 88/156 (56%), Gaps = 2/156 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K  +T +  + ++ E       +R  +I+ I  ARA GDLSENA+Y+ A + Q + EG
Sbjct: 1   MRKHRLTVESLENLKAEYNNLVNVDRVEVIEEIKAARANGDLSENADYETALDKQKVIEG 60

Query: 62  RMAELENIITRAEVI--DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           R+AE++ I+   E+I  + +T S   +  G+ V ++E +   +  Y+I+G  + +   G 
Sbjct: 61  RIAEIKAILDNHEIISSEGTTDSSGVVKIGSKVKILEMDENVEFEYEILGSVDNNPSMGR 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +S   P+A+A++GK+ G+++ V         +ILQ+
Sbjct: 121 ISNECPLAKAMLGKKAGEVVEVQNIAVPYKVKILQI 156


>gi|118462687|ref|YP_880450.1| transcription elongation factor GreA [Mycobacterium avium 104]
 gi|118163974|gb|ABK64871.1| transcription elongation factor GreA [Mycobacterium avium 104]
          Length = 159

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 72/152 (47%), Gaps = 4/152 (2%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +  D+++ EL       RP I   I++ R  GDL EN  Y AA+E Q   E R+ +
Sbjct: 3   WLTQESHDRLKAELDQLIAN-RPVIAAEINDRREEGDLRENGGYHAAREEQGQQEARIRQ 61

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
           L++++  A+V +    SG  +           +  D + + I   QE   D +  + S +
Sbjct: 62  LQDLLNNAKVGEAPKQSGVALPGSVVKVYYNGDKSDTETFLIATRQEGVNDGKLEVYSPN 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+  ALI  ++G+  S   P G  T E+  V
Sbjct: 122 SPLGGALIDAKVGETRSYTVPNGS-TVEVTLV 152


>gi|148544990|ref|YP_001272360.1| transcription elongation factor GreA [Lactobacillus reuteri DSM
           20016]
 gi|148532024|gb|ABQ84023.1| transcription elongation factor GreA [Lactobacillus reuteri DSM
           20016]
          Length = 165

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 82/150 (54%), Gaps = 3/150 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G+ +I++++   QQ +RP  I+ +  ARA GDLSEN EY  AK      E R+  L
Sbjct: 18  MTANGYHEIEEQIAKLQQ-QRPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRYL 76

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AE++         I  G TV++  ++  +++ Y IVG QEAD+    +S  SP+
Sbjct: 77  NKQLQYAEIVTPKND--HTIDLGTTVTIEFEDDHEQETYHIVGKQEADLAKQKISFDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A++ +  G  ++V AP      +I++V 
Sbjct: 135 GQAILHQTAGTTVTVEAPQSSYKVKIVKVE 164


>gi|15639013|ref|NP_218459.1| transcription elongation factor (greA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025253|ref|YP_001933025.1| transcription elongation factor GreA [Treponema pallidum subsp.
           pallidum SS14]
 gi|7387718|sp|O83063|GREA_TREPA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|238689311|sp|B2S1W7|GREA_TREPS RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|3322274|gb|AAC65015.1| transcription elongation factor (greA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189017828|gb|ACD70446.1| transcription elongation factor GreA [Treponema pallidum subsp.
           pallidum SS14]
          Length = 162

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 50/149 (33%), Positives = 81/149 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VT+K  +  ++EL+       P   + I  A   GDL ENAEY+AA+E Q      +  L
Sbjct: 9   VTAKMLNAKKKELQDLLDVRIPENSREIGRALELGDLRENAEYKAAREEQTRLNNMVTRL 68

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  I RA+V D +T+   R++FG  +SL    SG+ + Y I+G  E+  + G++S  SP+
Sbjct: 69  QEEIERAQVFDPTTVVAGRVSFGTVISLKNHTSGEDETYTILGPWESAPERGIISYMSPL 128

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
              L+ ++ G+ ++      EK YEIL +
Sbjct: 129 GSNLLNRKTGEQLAFTVGEHEKVYEILSI 157


>gi|294505364|ref|YP_003569426.1| transcription elongation factor [Yersinia pestis Z176003]
 gi|294355823|gb|ADE66164.1| transcription elongation factor [Yersinia pestis Z176003]
          Length = 117

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 58/117 (49%), Positives = 86/117 (73%), Gaps = 1/117 (0%)

Query: 43  LSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGD 101
           + ENAEY AA+E Q   EGR+ E+E  ++ A+VIDI+ M  + R+ FGATV ++  N+ +
Sbjct: 1   MKENAEYHAAREQQGFCEGRIQEIEAKLSNAQVIDITKMPNNGRVIFGATVRVLNLNTEE 60

Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           ++NY+IVGD EAD +  L+S++SPIAR LIGKE+ D++ ++ PGGE  YEIL V ++
Sbjct: 61  EQNYRIVGDDEADFKQNLISVNSPIARGLIGKEVDDVVVIHTPGGEVEYEILSVEYV 117


>gi|308235569|ref|ZP_07666306.1| transcription elongation factor GreA [Gardnerella vaginalis ATCC
           14018]
 gi|311114342|ref|YP_003985563.1| transcription elongation factor GreA [Gardnerella vaginalis ATCC
           14019]
 gi|310945836|gb|ADP38540.1| transcription elongation factor GreA [Gardnerella vaginalis ATCC
           14019]
          Length = 159

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 8/158 (5%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++  I +T + +DK+++EL  R+ E R  I + I+ ARA GDLSEN  YQAA+E Q  
Sbjct: 1   MAEEKTILLTKEAYDKLKEELAHREGEYRDEITERIAAARAEGDLSENGGYQAAREEQGK 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS- 117
           NEGR+ EL   +  A++++      +  + G    +  + +G +  Y +     A     
Sbjct: 61  NEGRINELIVKLRNAKILEAP----EAGSVGNGSLVTLELAGREMTYVLGSRDIAVATDY 116

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
            ++S  SPI  A++G + GD +S +AP G E +  I  
Sbjct: 117 DVISPESPIGAAIMGAKAGDTVSYSAPNGREISVTIKD 154


>gi|320538381|ref|ZP_08038256.1| prokaryotic transcription elongation factor, GreA/GreB protein
           [Treponema phagedenis F0421]
 gi|320144766|gb|EFW36507.1| prokaryotic transcription elongation factor, GreA/GreB protein
           [Treponema phagedenis F0421]
          Length = 893

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/149 (33%), Positives = 81/149 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VT+K  +  ++EL+     + P   K I +A   GDL ENAEY+AA+E Q      +  L
Sbjct: 740 VTAKMLEAKKKELQEIIDIKIPENSKEIGKALELGDLRENAEYKAAREEQTRLNNMVTRL 799

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  I RA+V D +  +  +++FG  V L    SG+ + Y I+G  E++ + G++S  SP+
Sbjct: 800 QEEIERAQVFDPTATTIGKVSFGTIVELKNHTSGENEVYTILGPWESNPEGGVISYMSPL 859

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
              L+  + G+ +S      EK YEIL +
Sbjct: 860 GTNLLNHKKGEKLSFTISEDEKIYEILNI 888


>gi|224532797|ref|ZP_03673413.1| transcription elongation factor GreA [Borrelia burgdorferi WI91-23]
 gi|224512285|gb|EEF82670.1| transcription elongation factor GreA [Borrelia burgdorferi WI91-23]
          Length = 901

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 75/145 (51%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL++ ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  ++Y I+G  E++   G++S  SP    L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
             + GD ++         Y + ++ 
Sbjct: 872 DSKEGDSLNFVINNTNFKYFVKKIE 896


>gi|219685364|ref|ZP_03540183.1| transcription elongation factor GreA (Transcript cleavage factor
           greA) [Borrelia garinii Far04]
 gi|219673137|gb|EED30157.1| transcription elongation factor GreA (Transcript cleavage factor
           greA) [Borrelia garinii Far04]
          Length = 900

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 73/145 (50%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL+  ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  ++Y I+G  E++   G++S  SP    L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
             + GD +          Y + ++ 
Sbjct: 871 DSKEGDSLDFIINNTNFRYFVKKIE 895


>gi|183221706|ref|YP_001839702.1| fused transcript cleavage factor/unknown domain fusion protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
 gi|189911782|ref|YP_001963337.1| transcript cleavage factor/unknown domain fusion protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Ames)']
 gi|167776458|gb|ABZ94759.1| greA transcription elongation factor-related protein [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780128|gb|ABZ98426.1| Transcriptional elongation factor, GreA/GreB family [Leptospira
           biflexa serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 921

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 49/153 (32%), Positives = 82/153 (53%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D + VT + F+  + E       E     + I EA+  GDL ENAEY+AA E Q   +  
Sbjct: 759 DVVLVTRRAFNAKKLEFEHLVNVEMAENSRDIGEAQEKGDLRENAEYKAAMEKQAQLQAA 818

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  LE  +  A ++D+S +  +++  G TV L  K +G+   Y I+G  +AD +  ++S 
Sbjct: 819 IKRLEAELKSARILDLSDVKTEKVGIGTTVRLKNKQTGESVTYSILGAWDADTEKNIISY 878

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SP+A++L+GK  G+  ++     E  YE+L +
Sbjct: 879 QSPLAKSLLGKHTGNEATLVFGSTETVYEVLDI 911


>gi|296128797|ref|YP_003636047.1| GreA/GreB family elongation factor [Cellulomonas flavigena DSM
           20109]
 gi|296020612|gb|ADG73848.1| GreA/GreB family elongation factor [Cellulomonas flavigena DSM
           20109]
          Length = 161

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 9/159 (5%)

Query: 1   MVDKI---PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M +      +T + +D++ +EL + Q   R  I   I+ AR  GDL EN  Y AA+E Q 
Sbjct: 1   MTETTAATWLTQEAYDRLTEELEYLQTVGRKEITDRIAAARDEGDLKENGGYHAAREEQA 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
             E R+ EL+  +   ++               T  +     GD+  + +   + A    
Sbjct: 61  KQEARIRELQAKLRNVQIGTPPDDGVVEPGMVVTAVVA----GDEMTFLLGSREIAGTAD 116

Query: 118 -GLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
             + S +SP+  A+ G ++GD  +  AP G     EI  
Sbjct: 117 IDVFSPTSPLGAAIHGHKVGDSTTYEAPNGRQIPVEIKA 155


>gi|259502254|ref|ZP_05745156.1| transcription elongation factor GreA 1 [Lactobacillus antri DSM
           16041]
 gi|259169872|gb|EEW54367.1| transcription elongation factor GreA 1 [Lactobacillus antri DSM
           16041]
          Length = 168

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 3/149 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G+ +I+ E+   Q  +RP  I+ +  ARA GDLSEN EY  AK      E R+  L
Sbjct: 18  MTRAGYQEIEDEIARLQA-QRPAKIEQLKAARALGDLSENTEYSTAKRELRHLESRLRYL 76

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  AE+I  +      +  G +V+L  ++  D   Y+IVG QEAD+    V+  SP+
Sbjct: 77  NKQLQYAEIIAPTNA--GTVDLGTSVTLRFEDDDDVATYRIVGKQEADLAKQKVAFDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
            +A++ +  G  ++V AP       I+++
Sbjct: 135 GQAIMHQRAGTTVTVQAPQAPYQVTIIKI 163


>gi|219684768|ref|ZP_03539710.1| transcription elongation factor GreA (Transcript cleavage factor
           greA) [Borrelia garinii PBr]
 gi|219671713|gb|EED28768.1| transcription elongation factor GreA (Transcript cleavage factor
           greA) [Borrelia garinii PBr]
          Length = 900

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 73/145 (50%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL+  ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  ++Y I+G  E++   G++S  SP    L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
             + GD +          Y + ++ 
Sbjct: 871 DSKEGDSLDFIINNTNFRYFVKKIE 895


>gi|332298363|ref|YP_004440285.1| transcription elongation factor GreA [Treponema brennaborense DSM
           12168]
 gi|332181466|gb|AEE17154.1| transcription elongation factor GreA [Treponema brennaborense DSM
           12168]
          Length = 899

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 81/150 (54%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VT+K F++ +Q+L      + P   K I EA A GDL ENAEY+AAKE Q L      +L
Sbjct: 746 VTAKMFEQKKQQLEHITSVDIPANSKEIGEALAQGDLRENAEYKAAKERQTLLASTATKL 805

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           ++ I RA + D +T +  R++FG  V+L    SG+ + Y I+G  E+D  + ++S  SP 
Sbjct: 806 QDEINRARIFDPTTGTTARVSFGTVVTLKNDVSGESEEYTILGPWESDPDNKVISYMSPF 865

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
             A++  +    +S      +  Y + ++ 
Sbjct: 866 GNAILNAKEKQALSFVINEHDYKYTVEKIE 895


>gi|254820658|ref|ZP_05225659.1| transcription elongation factor GreA [Mycobacterium intracellulare
           ATCC 13950]
 gi|296169944|ref|ZP_06851553.1| transcription elongation factor GreA [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295895408|gb|EFG75113.1| transcription elongation factor GreA [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 164

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 6/159 (3%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T +  D+++ EL       RP I   I++ R  GDL EN  Y AA+E Q  
Sbjct: 1   MTDTSVTWLTQESHDRLKAELDQLIAN-RPVIAAEINDRREEGDLRENGGYHAAREEQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQ 116
            E R+ +L++++  A+V +    SG  +           +  D + + I   QE   D +
Sbjct: 60  QEARIRQLQDLLNNAKVGEAPKQSGVALPGSVVKVYYNGDKSDTETFLIATRQEGVNDGK 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             + S +SP+  ALI  ++G+  S   P G  T E+  V
Sbjct: 120 LEVYSPNSPLGGALIDAKVGETRSYVVPNGN-TVEVTLV 157


>gi|240170287|ref|ZP_04748946.1| transcription elongation factor GreA [Mycobacterium kansasii ATCC
           12478]
          Length = 164

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 6/159 (3%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T +  D+++ EL       RP I   I++ R  GDL EN  Y AA+E Q  
Sbjct: 1   MTDTQVTWLTQESHDRLKAELDQLIAN-RPIIAAEINDRREEGDLRENGGYHAAREEQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQ 116
            E R+ +L+++++ A+V +  T SG  +           +  D + + I   QE   D +
Sbjct: 60  QEARIRQLQDLLSNAKVGEAPTQSGVALPGSVVKVYYNGDESDTETFLIATRQEGVNDGK 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             + S +SP+  ALI  ++G+  S   P G  T E+  V
Sbjct: 120 LEVYSPNSPLGGALIDAKVGETRSYKVPNGN-TVEVTLV 157


>gi|255282088|ref|ZP_05346643.1| transcription elongation factor GreA [Bryantella formatexigens DSM
           14469]
 gi|255267407|gb|EET60612.1| transcription elongation factor GreA [Bryantella formatexigens DSM
           14469]
          Length = 191

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 1/148 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T     KI++E+ +R+   R   I A+ EARA GDLSEN EY AAK  +N NE R+  L
Sbjct: 29  LTRSDVRKIEEEIEYRKLVVRKEAIAAVKEARAQGDLSENFEYYAAKRDKNKNESRIRYL 88

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E ++  A V+   +  G+      TV +  ++  + + Y+IV     +  SG +SI SP+
Sbjct: 89  ERMLKTARVVSDVSRDGEVG-LNNTVEVYFEDDDETETYKIVTSIRGNSMSGKISIESPM 147

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
            RAL+GK+ GD + V        Y +++
Sbjct: 148 GRALLGKKAGDRVYVKVNENAGYYVVIK 175


>gi|226321957|ref|ZP_03797482.1| transcription elongation factor GreA [Borrelia burgdorferi Bol26]
 gi|226232547|gb|EEH31301.1| transcription elongation factor GreA [Borrelia burgdorferi Bol26]
          Length = 901

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 73/145 (50%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL++ ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +   ++Y I+G  E++   G++S  SP    L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTDKDESYLILGPWESNPDEGIISYKSPFGENLL 871

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
               GD ++         Y + ++ 
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896


>gi|51598396|ref|YP_072584.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
           garinii PBi]
 gi|51572967|gb|AAU06992.1| transcription elongation factor [Borrelia garinii PBi]
          Length = 900

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 73/145 (50%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL+  ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  ++Y I+G  E++   G++S  SP    L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
             + GD +          Y + ++ 
Sbjct: 871 DSKEGDSLDFIINNTNFRYFVKKIE 895


>gi|295395791|ref|ZP_06805979.1| transcription elongation factor GreA [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971326|gb|EFG47213.1| transcription elongation factor GreA [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 163

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 2/154 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            D+  +T + F+++ +EL       R  I + I  AR  GDL EN  Y AA+E Q   E 
Sbjct: 7   ADQTWLTPQAFERLTKELEHLSGPGRTEIAERIESARDEGDLKENGGYHAAREEQGKLEA 66

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ELE+++  A V +           G  V+L       +           +    + S
Sbjct: 67  RIRELEHLLQNANVSEPDGDESTVT-PGKLVTLKMGRRKIEFLLGSREIISEEDHVDVFS 125

Query: 122 ISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
             SP+  A+ GK++GD +   AP G      I  
Sbjct: 126 EKSPLGAAVNGKKVGDKVEYEAPNGRMIEVTIES 159


>gi|294056141|ref|YP_003549799.1| GreA/GreB family elongation factor [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615474|gb|ADE55629.1| GreA/GreB family elongation factor [Coraliomargarita akajimensis
           DSM 45221]
          Length = 619

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 88/153 (57%), Gaps = 1/153 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           V+   FD  + E      ++ P   +AI  AR +GDL EN+EY+ A++ Q++   R  EL
Sbjct: 464 VSQASFDAAKAEYEDLIAKKIPENKEAIVIAREHGDLKENSEYKMARQDQDILLARKNEL 523

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E  ++RA V D S  + D +  G+ V L E ++G  + Y I+G  ++D ++ ++S  +P+
Sbjct: 524 EVDLSRARVTDFSEATKDNVGIGSVVELKEGSTGKVRRYSILGAWDSDPENDILSYKTPL 583

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL-WI 158
           A+ L+GK  GD ++    G E+T+ IL +  +I
Sbjct: 584 AQQLLGKSGGDSVTTKIGGSEETWTILSIERYI 616


>gi|225549223|ref|ZP_03770196.1| transcription elongation factor GreA [Borrelia burgdorferi 94a]
 gi|225370081|gb|EEG99521.1| transcription elongation factor GreA [Borrelia burgdorferi 94a]
          Length = 901

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 74/145 (51%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL++ ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  ++Y I+G  E++   G++S  SP    L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
               GD ++         Y + ++ 
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896


>gi|15594477|ref|NP_212266.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
           burgdorferi B31]
 gi|218249878|ref|YP_002374660.1| transcription elongation factor GreA (Transcript cleavage
           factorgreA) [Borrelia burgdorferi ZS7]
 gi|223889075|ref|ZP_03623664.1| transcription elongation factor GreA (Transcript cleavage factor
           greA) [Borrelia burgdorferi 64b]
 gi|7531126|sp|O51157|GREA_BORBU RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|2688004|gb|AAC66506.1| transcription elongation factor (greA) [Borrelia burgdorferi B31]
 gi|218165066|gb|ACK75127.1| transcription elongation factor GreA (Transcript cleavage
           factorgreA) [Borrelia burgdorferi ZS7]
 gi|223885324|gb|EEF56425.1| transcription elongation factor GreA (Transcript cleavage factor
           greA) [Borrelia burgdorferi 64b]
          Length = 901

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 74/145 (51%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL++ ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  ++Y I+G  E++   G++S  SP    L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
               GD ++         Y + ++ 
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896


>gi|195941869|ref|ZP_03087251.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
           burgdorferi 80a]
 gi|195942362|ref|ZP_03087744.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
           burgdorferi 80a]
 gi|195942405|ref|ZP_03087787.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
           burgdorferi 80a]
          Length = 901

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 74/145 (51%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL++ ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  ++Y I+G  E++   G++S  SP    L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
               GD ++         Y + ++ 
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896


>gi|195942372|ref|ZP_03087754.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
           burgdorferi 80a]
          Length = 901

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 74/145 (51%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL++ ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  ++Y I+G  E++   G++S  SP    L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
               GD ++         Y + ++ 
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896


>gi|225549861|ref|ZP_03770823.1| transcription elongation factor GreA [Borrelia burgdorferi 118a]
 gi|225369552|gb|EEG99003.1| transcription elongation factor GreA [Borrelia burgdorferi 118a]
 gi|312148364|gb|ADQ31023.1| transcription elongation factor GreA (Transcript cleavage
           factorgreA) [Borrelia burgdorferi JD1]
          Length = 901

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 74/145 (51%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL++ ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  ++Y I+G  E++   G++S  SP    L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
               GD ++         Y + ++ 
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896


>gi|312149070|gb|ADQ29141.1| transcription elongation factor GreA (Transcript cleavage
           factorgreA) [Borrelia burgdorferi N40]
          Length = 901

 Score =  101 bits (252), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 74/145 (51%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL++ ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  ++Y I+G  E++   G++S  SP    L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
               GD ++         Y + ++ 
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896


>gi|226320676|ref|ZP_03796234.1| transcription elongation factor GreA [Borrelia burgdorferi 29805]
 gi|226233892|gb|EEH32615.1| transcription elongation factor GreA [Borrelia burgdorferi 29805]
          Length = 901

 Score =  101 bits (252), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 74/145 (51%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL++ ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  ++Y I+G  E++   G++S  SP    L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
               GD ++         Y + ++ 
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896


>gi|118594719|ref|ZP_01552066.1| transcription elongation factor GreB [Methylophilales bacterium
           HTCC2181]
 gi|118440497|gb|EAV47124.1| transcription elongation factor GreB [Methylophilales bacterium
           HTCC2181]
          Length = 144

 Score =  101 bits (252), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 51/144 (35%), Positives = 78/144 (54%), Gaps = 1/144 (0%)

Query: 15  IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
           +Q+EL    + +RP  +K IS A   GD SEN +Y   K+     + R+  L   I  A+
Sbjct: 1   MQRELSSLIKLDRPETVKVISWAAGNGDRSENGDYIYGKKKLRQIDSRIKFLLTAIEDAD 60

Query: 75  VIDISTM-SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
           ++  ST     ++ FGA V L+++ S    + +IVG  E +   G +S  SP+A+ALIG+
Sbjct: 61  IVHPSTSIDKKKVYFGANVKLLDEQSKSTLDIRIVGAHEINHNIGNISWLSPLAKALIGR 120

Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157
              D+I V  P   KTY IL+V +
Sbjct: 121 TSSDLIEVQTPMNIKTYIILKVDY 144


>gi|216264351|ref|ZP_03436343.1| transcription elongation factor GreA (Transcript cleavage factor
           greA) [Borrelia burgdorferi 156a]
 gi|221217376|ref|ZP_03588847.1| transcription elongation factor GreA (Transcript cleavage
           factorgreA) [Borrelia burgdorferi 72a]
 gi|224533979|ref|ZP_03674563.1| transcription elongation factor GreA [Borrelia burgdorferi
           CA-11.2a]
 gi|215980824|gb|EEC21631.1| transcription elongation factor GreA (Transcript cleavage factor
           greA) [Borrelia burgdorferi 156a]
 gi|221192654|gb|EEE18870.1| transcription elongation factor GreA (Transcript cleavage
           factorgreA) [Borrelia burgdorferi 72a]
 gi|224512815|gb|EEF83182.1| transcription elongation factor GreA [Borrelia burgdorferi
           CA-11.2a]
          Length = 901

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 74/145 (51%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL++ ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 752 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  ++Y I+G  E++   G++S  SP    L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 871

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
               GD ++         Y + ++ 
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896


>gi|260893494|ref|YP_003239591.1| transcription elongation factor GreA [Ammonifex degensii KC4]
 gi|260865635|gb|ACX52741.1| transcription elongation factor GreA [Ammonifex degensii KC4]
          Length = 159

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 59/157 (37%), Positives = 94/157 (59%), Gaps = 3/157 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERP-RIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +K I +T +G  ++++EL   +   R   + + I +A A+GD+SENAEY+ AK  Q  
Sbjct: 1   MKEKEIVLTPEGLRRLEEELELLKSVRR-REVAERIKQALAFGDISENAEYEDAKNEQAF 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+  LE I+  A VID   +  + +  G+TV L +   G +  Y IVG +EAD  + 
Sbjct: 60  VEGRIITLEKILRHARVIDQEEIGTEEVTIGSTVRLKDLADGAEYEYTIVGSEEADPAAH 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+ RAL+GK+ GD + V+ P G+ +++IL +
Sbjct: 120 RISYESPVGRALLGKKKGDTVDVDVPAGKLSFQILDI 156


>gi|119715224|ref|YP_922189.1| transcription elongation factor GreA [Nocardioides sp. JS614]
 gi|119535885|gb|ABL80502.1| transcription elongation factor GreA [Nocardioides sp. JS614]
          Length = 167

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 75/152 (49%), Gaps = 2/152 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           + +T   +DK++ EL   +   R  II  IS AR  GDL EN  Y AA+E Q   EGR+ 
Sbjct: 10  VWLTQDAYDKLRAELESLKGPVRQEIIARISSARDEGDLKENGAYHAAREEQGKVEGRIR 69

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV-SIS 123
           +LE+++ RAEV +     G              ++ D+    ++G +E + +   V S  
Sbjct: 70  QLEDVLRRAEVGETPPNDGVVEPGMVVTYRFVGDAEDEVETFLLGAREIEPEGLTVYSPQ 129

Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           SP+  A+ GK  GD +S  AP G E    I+ 
Sbjct: 130 SPLGSAINGKAKGDTVSYLAPNGKELQVVIVD 161


>gi|309810926|ref|ZP_07704726.1| transcription elongation factor GreA [Dermacoccus sp. Ellin185]
 gi|308435080|gb|EFP58912.1| transcription elongation factor GreA [Dermacoccus sp. Ellin185]
          Length = 163

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 3/149 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T   +D++  EL   + E R  I K I  AR  GDL EN  Y AAKE Q   E R+ +L
Sbjct: 11  LTQDAYDRLSAELEHLKGEGRSDIAKRIEAAREEGDLKENGGYHAAKEEQGKMEARIRQL 70

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E+++  A V +    +G   +    V  VE     +       +   D    + S  SP+
Sbjct: 71  ESLLRDAVVGEAPKDNGIVDS--GMVVTVEMFGDTETFLLGSREIAGDADIDVYSEQSPL 128

Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQ 154
             A++GK++G+  S +AP G     +I+ 
Sbjct: 129 GEAIMGKKVGEETSYDAPNGKTIEVKIVD 157


>gi|319938683|ref|ZP_08013047.1| transcription elongation factor greA [Streptococcus anginosus
           1_2_62CV]
 gi|319811733|gb|EFW07999.1| transcription elongation factor greA [Streptococcus anginosus
           1_2_62CV]
          Length = 160

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 65/157 (41%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE++D   ++ D +A G TV++ E    D++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVDSDAVAQDEVAIGKTVTIQEVGETDEEVYMIVGAAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD  +V  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKILKVE 157


>gi|325003219|ref|ZP_08124331.1| transcription elongation factor G [Pseudonocardia sp. P1]
          Length = 162

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 4/159 (2%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T   +D+++ EL     E RP I   I+  R  GDL EN  Y AA+E Q  
Sbjct: 1   MTDTQATWLTQDAYDRLKSELDGLI-ENRPVIAAEINARREEGDLKENGGYHAAREEQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ +L+ ++  A+V    + + +           E +   +K      ++ +     
Sbjct: 60  QEARIRQLQELLRTAQVGTAPSSADEAAPGTVLTLKYEDDDDTEKVLLGSREEGSHGDLQ 119

Query: 119 LVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQVL 156
           ++S +SP+  AL+G + GD      P GG     +++V 
Sbjct: 120 VISPNSPLGAALLGAKPGDTREYQLPDGGSMKVSLVEVE 158


>gi|256824590|ref|YP_003148550.1| transcription elongation factor [Kytococcus sedentarius DSM 20547]
 gi|256687983|gb|ACV05785.1| transcription elongation factor [Kytococcus sedentarius DSM 20547]
          Length = 164

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 4/156 (2%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +   +T   ++++  EL   + E R  I   I +AR+ GDL EN  Y AAKE Q   EGR
Sbjct: 7   ETTYLTRAAYERLNAELEQLKGEGRREIAHRIEDARSEGDLKENGGYHAAKEEQGKMEGR 66

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVS 121
           +A+L  ++  AEV +        +  G  V++  +  G+ + +     + AD     + S
Sbjct: 67  IAQLTTLLQNAEVGEEPPADDGVVEPGMIVTI--EMFGETETFLFGNREIADGDDMEVYS 124

Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
             SP+ +A+ G+  G+ I   AP G+K   +I++V 
Sbjct: 125 ERSPLGKAIDGRNQGETIGYEAPNGKKIDVKIIEVR 160


>gi|163814034|ref|ZP_02205426.1| hypothetical protein COPEUT_00187 [Coprococcus eutactus ATCC 27759]
 gi|158450483|gb|EDP27478.1| hypothetical protein COPEUT_00187 [Coprococcus eutactus ATCC 27759]
          Length = 165

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 91/151 (60%), Gaps = 2/151 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T K  +KI+QE+ +R+   R   ++A+ EARA GDLSEN EY AAK+ +N NE R+  L
Sbjct: 5   LTQKDIEKIEQEIEYRKCVVRKEKLEAVKEARAQGDLSENFEYYAAKKDKNANERRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           + ++  A++I+ ++   +      TV++  ++  +++ Y++V    AD+  GLVS  SPI
Sbjct: 65  DRLVRTADIIEDNSSDDEVG-IDNTVTVYFEDDDEEETYRVVTSVRADILEGLVSNVSPI 123

Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQVL 156
            +A++G ++GD + V    G+     I ++ 
Sbjct: 124 GKAILGHKVGDRVQVVPERGDPYFITIRKIE 154


>gi|218660639|ref|ZP_03516569.1| transcription elongation factor GreA [Rhizobium etli IE4771]
          Length = 119

 Score =  101 bits (251), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 77/118 (65%), Positives = 96/118 (81%)

Query: 40  YGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS 99
                ENAEY AAKE Q+ NEGR++EL+++  RAEVID++ MSGD+I FGA V LV++++
Sbjct: 1   MATFPENAEYHAAKEAQSHNEGRISELKDLTARAEVIDLTKMSGDKIKFGAKVKLVDEDT 60

Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            ++K YQIVGDQEADV++G +SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 61  EEEKTYQIVGDQEADVKAGRISISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 118


>gi|237785171|ref|YP_002905876.1| transcription elongation factor GreA [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237758083|gb|ACR17333.1| Transcription elongation factor [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 168

 Score =  101 bits (251), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 4/156 (2%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            +   +T + +D++++EL   +   RP I   I+E R  GDL EN  Y AA+E Q   E 
Sbjct: 5   TNTRWLTQEAYDRLKKELDDLKAN-RPVIAAEINERREEGDLKENGGYHAAREQQGQEEA 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD--QEADVQSGL 119
           R+A LE ++  A + +  + SG  +         + +  D + + I       ++     
Sbjct: 64  RIAYLEELLDSATIGEAPSQSGVALVGSVVHVYYDGDEDDTETFLIGTRGVHSSNTDLET 123

Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
            S  +P+  A++G + G+      P G   +  I++
Sbjct: 124 YSTDAPLGAAIVGAKEGETREYQTPNGSTVSVTIVK 159


>gi|226307748|ref|YP_002767708.1| transcription elongation factor GreA [Rhodococcus erythropolis PR4]
 gi|259647649|sp|C1A2Y4|GREA_RHOE4 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|226186865|dbj|BAH34969.1| transcription elongation factor GreA [Rhodococcus erythropolis PR4]
          Length = 164

 Score =  101 bits (251), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 6/159 (3%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +     +T +  D+++ EL       RP I   I+E R  GDL EN  Y AA+E Q  
Sbjct: 1   MTETQVTWLTQESHDRLKNELDQLIAN-RPVIAAEINERREEGDLKENGGYHAAREEQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQ 116
            E R+ +L+ ++  A+V +  T SG  +         + +  D + + I   +E   D +
Sbjct: 60  QEARIRQLQELLNSAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDAK 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
             + S +SP+  AL+  ++GD    N P G      +L 
Sbjct: 120 LEVYSPNSPLGGALLEAKVGDTREYNLPNGSTMKVTLLS 158


>gi|326331165|ref|ZP_08197461.1| transcription elongation factor GreA [Nocardioidaceae bacterium
           Broad-1]
 gi|325951060|gb|EGD43104.1| transcription elongation factor GreA [Nocardioidaceae bacterium
           Broad-1]
          Length = 169

 Score =  101 bits (251), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 6/154 (3%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           I ++   FDK+  EL + +   R  I+  IS AR  GDL EN  Y AA+E Q   EG++ 
Sbjct: 12  IWLSKGAFDKLTAELEYLKGPRRQEILAEISSARDEGDLKENGGYHAAREEQGKLEGQIQ 71

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSL-VEKNSGDKKNYQIVGDQEADVQSGLV--- 120
           +LE ++ +A+         D ++ G  V+   E +  D+   +++   E    +G V   
Sbjct: 72  QLEALLRKADTTVPEDD--DVVSVGKLVTFKFEGDDDDEAETRLIASIEMKDYAGGVEIS 129

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           S +SPI  ALIG  +GD ++   P G    EIL+
Sbjct: 130 SAASPIGAALIGARVGDTVTYEGPRGPLKVEILK 163


>gi|152965067|ref|YP_001360851.1| transcription elongation factor GreA [Kineococcus radiotolerans
           SRS30216]
 gi|151359584|gb|ABS02587.1| transcription elongation factor GreA [Kineococcus radiotolerans
           SRS30216]
          Length = 165

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 4/151 (2%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T   +D+++ E      E R  + K I +AR  GDL ENA Y AAKE Q   E R+ +
Sbjct: 11  WLTQDAYDRLKAEYDRLSGEGRSELAKRIEQAREEGDLKENAGYHAAKEEQGKQELRIRQ 70

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISS 124
           L +++  A+V +        +  GA V++  + +G++  + +   +  D     + S  S
Sbjct: 71  LRHLLETAQVGEAPKSVAGEVTLGAVVTV--ELAGEEMRFLLGSREMGDGAGLDVYSEKS 128

Query: 125 PIARALIGKELGDIISVNAPGGE-KTYEILQ 154
           P+  A++G++ G+ ++  AP G      I+ 
Sbjct: 129 PLGAAVLGRQPGEDVTYTAPSGRSIPVRIIA 159


>gi|326789147|ref|YP_004306968.1| transcription elongation factor GreA [Clostridium lentocellum DSM
           5427]
 gi|326539911|gb|ADZ81770.1| transcription elongation factor GreA [Clostridium lentocellum DSM
           5427]
          Length = 155

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 85/152 (55%), Gaps = 1/152 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T +  D +++E+ +R+   R +  + + EARA+GDLSEN EY+AAK  +  NEGR+ 
Sbjct: 3   NYLTQQDIDNMKKEIEYRKVVVRKQRNEEVKEARAHGDLSENYEYKAAKRERGRNEGRIK 62

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE +I  A +I  +T +G+    G  V +          Y+IV   E D  +  +SI S
Sbjct: 63  YLERMIKTATIITDNTEAGEVG-LGKLVDVYFIEDDMNIEYEIVTTMETDAINNKISIES 121

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+ + +  K +GDI+++++P GE +  I  + 
Sbjct: 122 PLGKMIYKKRVGDIVNIDSPDGEYSVRIQSIR 153


>gi|154484187|ref|ZP_02026635.1| hypothetical protein EUBVEN_01898 [Eubacterium ventriosum ATCC
           27560]
 gi|149734664|gb|EDM50581.1| hypothetical protein EUBVEN_01898 [Eubacterium ventriosum ATCC
           27560]
          Length = 165

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 50/148 (33%), Positives = 82/148 (55%), Gaps = 1/148 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T    +KI++E+  R+   RP  I+A+ EARA GDLSEN EY AAK+ +N NEGR+  L
Sbjct: 3   LTQSDVEKIKEEIEHRKLVVRPEAIEAVKEARAQGDLSENFEYYAAKKDKNKNEGRIRYL 62

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E ++  A +I   +   +      TV +  ++  + + ++IV     D  SG +S  SP+
Sbjct: 63  ERVLKTATIISDESADDEVG-LNNTVQVYFEDDDETETFKIVSTMRGDSISGRISGDSPM 121

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
             AL+G ++GD + V        Y +++
Sbjct: 122 GAALMGHKVGDRVEVKVNEKVSYYVVIK 149


>gi|283783053|ref|YP_003373807.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Gardnerella vaginalis 409-05]
 gi|298253524|ref|ZP_06977314.1| YhbC family protein [Gardnerella vaginalis 5-1]
 gi|283441369|gb|ADB13835.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Gardnerella vaginalis 409-05]
 gi|297532291|gb|EFH71179.1| YhbC family protein [Gardnerella vaginalis 5-1]
          Length = 159

 Score =  101 bits (250), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 8/158 (5%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++  I +T + +DK+++EL  R+ E R  I + I+ ARA GDLSEN  YQAA+E Q  
Sbjct: 1   MAEEKTILLTQEAYDKLKEELAHREGEYREEITERIAAARAEGDLSENGGYQAAREEQGK 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS- 117
           NEGR+ EL   +  A++++           G    +  + +G +  Y +     A     
Sbjct: 61  NEGRINELIVKLRNAKILEAPKD----GTVGNGSLVTLELAGREMTYVLGSRDIAVATDY 116

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
            ++S  SPI  A++G   GD +S  AP G E +  I  
Sbjct: 117 DVISPESPIGAAIMGAHAGDTVSYAAPNGREISVTIKD 154


>gi|297572051|ref|YP_003697825.1| GreA/GreB family elongation factor [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296932398|gb|ADH93206.1| GreA/GreB family elongation factor [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 159

 Score =  101 bits (250), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 3/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D   ++ + FD++  EL   +   R  I   I EAR+ GDL EN  Y AA+E Q+  E
Sbjct: 1   MADTTWLSQETFDRLSAELEHLKTTGRTDIATKIEEARSEGDLRENGGYHAAREEQSKME 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+ EL  ++  AEV D      +       V   E N  +KK      +    V   + 
Sbjct: 61  GRIQELTYLLEHAEVGDAPVELNEVAP--GLVITAEVNGKEKKFLLGSREAAEFVDIDVY 118

Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
             ++P+  A++GK++GD  S  AP G E   ++L + 
Sbjct: 119 PETAPLGSAIMGKKVGDETSYTAPNGKEFAVKVLGIE 155


>gi|297243708|ref|ZP_06927639.1| YhbC family protein [Gardnerella vaginalis AMD]
 gi|296888459|gb|EFH27200.1| YhbC family protein [Gardnerella vaginalis AMD]
          Length = 159

 Score =  101 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 81/158 (51%), Gaps = 8/158 (5%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++  I +T + +DK+++EL  R+ E R  I + I+ ARA GDLSEN  YQAA+E Q  
Sbjct: 1   MAEEKTILLTQEAYDKLKEELAHREGEYREEITERIAAARAEGDLSENGGYQAAREEQGK 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS- 117
           NEGR+ EL   +  A++++           G    +  + +G +  Y +     A     
Sbjct: 61  NEGRINELIVKLRNAKILEAPKD----GTVGNGSLVTLELAGREMTYVLGSRDIAVATDY 116

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
            ++S  SPI  A++G   GD +S  AP G E +  I  
Sbjct: 117 DVISPESPIGAAIMGAHTGDTVSYAAPNGREISVTIKD 154


>gi|91775490|ref|YP_545246.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
 gi|91709477|gb|ABE49405.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
          Length = 165

 Score =  101 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 80/153 (52%), Gaps = 15/153 (9%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  GF  +QQ+    +QE +P  ++               +  A ++   + +  + 
Sbjct: 28  NYVTPHGFKLLQQQASALEQERQPLTMRK--------------DDPAVQQRLAMIDRDLR 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L+  +  A V+D +T   D + FGATV + ++N G+   + IVG+ EAD+ +  VS  S
Sbjct: 74  YLQARLESAIVVDPATQPTDTVLFGATVEVEDEN-GNSHTFMIVGEDEADIATNRVSWVS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+A+ALIG+++GD ++ + P G    EI+ + +
Sbjct: 133 PLAKALIGQKIGDSVTWHRPAGNLELEIIAIHY 165


>gi|108801108|ref|YP_641305.1| transcription elongation factor GreA [Mycobacterium sp. MCS]
 gi|119870249|ref|YP_940201.1| transcription elongation factor GreA [Mycobacterium sp. KMS]
 gi|126436946|ref|YP_001072637.1| transcription elongation factor GreA [Mycobacterium sp. JLS]
 gi|108771527|gb|ABG10249.1| transcription elongation factor GreA [Mycobacterium sp. MCS]
 gi|119696338|gb|ABL93411.1| transcription elongation factor GreA [Mycobacterium sp. KMS]
 gi|126236746|gb|ABO00147.1| transcription elongation factor GreA [Mycobacterium sp. JLS]
          Length = 164

 Score =  101 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 6/159 (3%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T + +D+++ EL       RP I   I++ R  GDL EN  Y AA+E Q  
Sbjct: 1   MTDTQVTWLTQESYDRLKAELDQLIAN-RPVIAAEINDRREEGDLRENGGYHAAREQQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQ 116
            E R+ +L+ ++  A+V +    SG  +         + +  D + + I   ++A  D +
Sbjct: 60  EEARIRQLQELLNNAKVGEAPKQSGVALPGSVVKVYYDGDEKDTETFLIGTREQAVNDGK 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             + S +SP+  ALI  ++G+  +   P G  T E+  V
Sbjct: 120 LEVYSPASPLGAALIDAKVGETRTYTVPSGS-TVEVTLV 157


>gi|308176537|ref|YP_003915943.1| transcription elongation factor GreA [Arthrobacter arilaitensis
           Re117]
 gi|307744000|emb|CBT74972.1| transcription elongation factor GreA [Arthrobacter arilaitensis
           Re117]
          Length = 165

 Score =  101 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 5/152 (3%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           + +T + +D++Q EL +     R  I+  I +AR+ GDL EN  Y AA+E Q   E R+ 
Sbjct: 10  VWLTQEAYDRLQDELTFLSGPGRAEIVARIEQARSEGDLKENGGYHAAREEQGKAEARIL 69

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSIS 123
            L++++ RA+V D     G        V+     +GD+  +     + A D    + S  
Sbjct: 70  YLKDLLRRADVGDAPADDGIVEPGMLVVA---NIAGDETTFLFGSREVAGDTDLEVYSEQ 126

Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           SPI  A+ G ++GD +S  AP G +   EI+ 
Sbjct: 127 SPIGVAVHGAKVGDKLSYLAPNGRDIKVEIIS 158


>gi|296394382|ref|YP_003659266.1| GreA/GreB family elongation factor [Segniliparus rotundus DSM
           44985]
 gi|296181529|gb|ADG98435.1| GreA/GreB family elongation factor [Segniliparus rotundus DSM
           44985]
          Length = 163

 Score =  101 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M + +  +T +  D+++ EL       RP +   I+E R  GDL EN  Y AA+E Q   
Sbjct: 1   MTENVTWLTQEAHDRLKAELDSLIAN-RPVLAAEINERREEGDLKENGGYHAAREEQGQQ 59

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQS 117
           E R+ +L++++  A+V    T SG  +         + +  D + + I   +E     + 
Sbjct: 60  EARIRQLQDLLATAKVGAAPTQSGVALPGSVVTVYYDGDKSDTETFLIATREEGAQGGKL 119

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            + S +SP+  AL+  ++G+      P G     +++V 
Sbjct: 120 EVYSPNSPLGGALLDAKVGETREYTVPNGA----VVKVT 154


>gi|328955979|ref|YP_004373312.1| transcription elongation factor GreA [Coriobacterium glomerans PW2]
 gi|328456303|gb|AEB07497.1| transcription elongation factor GreA [Coriobacterium glomerans PW2]
          Length = 157

 Score =  101 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 3/155 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            ++I +T +G  K+  EL WR+      I++ I  AR +GDLSEN+EY  AK+ Q  N  
Sbjct: 3   ANEIVLTPEGRQKLVDELDWRETTLSKEIVERIKIARDFGDLSENSEYDDAKDEQAKNAA 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ E++ I+  A+ +  +  S      G++VSLV+ +        +VG  E +     +S
Sbjct: 63  RIVEIQAILANAQEVKATGHSLTVS-IGSSVSLVDADGVATD-VSLVGTTETNSLEHKIS 120

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155
             SP+  A+IG+  G+ + V  P G    Y I +V
Sbjct: 121 NESPVGHAIIGRAEGETVEVTMPSGTVRAYTITKV 155


>gi|54020301|ref|YP_116197.1| transcription elongation factor [Mycoplasma hyopneumoniae 232]
 gi|81378424|sp|Q5ZZL8|GREA_MYCH2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|53987474|gb|AAV27675.1| transcription elongation factor [Mycoplasma hyopneumoniae 232]
 gi|312601624|gb|ADQ90879.1| Transcription elongation factor greA [Mycoplasma hyopneumoniae 168]
          Length = 160

 Score =  100 bits (249), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 94/153 (61%), Gaps = 2/153 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           DKI +T +  ++I++EL      ER  +I+ I +AR+ GDLSENAEY  A+E Q + E R
Sbjct: 7   DKILLTQQKLEEIEKELEHLINVERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESR 66

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELE II++A++I     S  R++ G+ VSL    SG+ + +QIV   +AD     +S 
Sbjct: 67  IRELETIISKAKIIKADLGS-SRVSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISN 125

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SPIA+AL+G+  GD + V+    + +  IL+V
Sbjct: 126 FSPIAQALLGQHQGDEVEVDV-NEKYSVRILEV 157


>gi|256389881|ref|YP_003111445.1| transcription elongation factor GreA [Catenulispora acidiphila DSM
           44928]
 gi|256356107|gb|ACU69604.1| transcription elongation factor GreA [Catenulispora acidiphila DSM
           44928]
          Length = 164

 Score =  100 bits (249), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 1/142 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T   +D++  EL+      R  I + I  AR  GDL EN  Y AAKE Q   E R+ +
Sbjct: 10  WLTQDAYDRLTAELQQLSGPGRVEIAQKIEAAREEGDLRENGGYHAAKEEQGKIELRIRQ 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++  A+V D             T+   + +  D   + +   ++A     + S  SP
Sbjct: 70  LTQLLEHAKVGDSVESGVAVPGAVVTI-AFDGDEDDTLTFLLGSREDAADNMEVYSAQSP 128

Query: 126 IARALIGKELGDIISVNAPGGE 147
           +  A+ GK++G+      P G+
Sbjct: 129 LGGAINGKKIGEQAEYELPNGK 150


>gi|289178779|gb|ADC86025.1| GreA [Bifidobacterium animalis subsp. lactis BB-12]
          Length = 203

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 6/152 (3%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           + +T + +DK+++EL  R+ E R  I + I+ ARA GDLSEN  YQAA+E Q+ NEGR+ 
Sbjct: 51  VLLTQEAYDKMKEELAHREGEYRDEITERIAAARAEGDLSENGGYQAAREEQSKNEGRIN 110

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLVSIS 123
           EL   +  A++I+           G    +  +  G++  Y I            ++S  
Sbjct: 111 ELIVKLRNAKIIEAP----KAGEVGNGSLVTIELGGNEMQYVIGSRDITVATDYDVISPE 166

Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           SPI  A+IG ++GD+++  AP G E +  I +
Sbjct: 167 SPIGGAIIGHKVGDVVTYKAPNGREISVTIKE 198


>gi|295094872|emb|CBK83963.1| Transcription elongation factor [Coprococcus sp. ART55/1]
          Length = 165

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/151 (35%), Positives = 91/151 (60%), Gaps = 2/151 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T K  +K++QE+ +R+   R   ++A+ EARA GDLSEN EY AAK+ +N NE R+  L
Sbjct: 5   LTKKDIEKMEQEIEYRKCVVRKEKLEAVKEARAQGDLSENFEYYAAKKDKNANERRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           + ++  A++ID ++   +      TV++  ++  +++ Y++V    ADV  G VS  SPI
Sbjct: 65  DRLVRTADIIDDTSADDEVG-IDNTVTVYFEDDDEEETYRVVTSVRADVLDGRVSNVSPI 123

Query: 127 ARALIGKELGDIISVNAPGGEKTY-EILQVL 156
            RA++G ++GD + V    GE  Y  I ++ 
Sbjct: 124 GRAIMGHKVGDRVQVVPEKGEPYYLVIRKIE 154


>gi|111114955|ref|YP_709573.1| transcript cleavage factor/unknown domain fusion protein [Borrelia
           afzelii PKo]
 gi|216263923|ref|ZP_03435917.1| transcription elongation factor GreA (Transcript cleavage factor
           greA) [Borrelia afzelii ACA-1]
 gi|110890229|gb|ABH01397.1| transcription elongation factor [Borrelia afzelii PKo]
 gi|215979967|gb|EEC20789.1| transcription elongation factor GreA (Transcript cleavage factor
           greA) [Borrelia afzelii ACA-1]
          Length = 900

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 73/145 (50%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL+  ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 751 LNKKQKELKHLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  ++Y I+G  E++   G++S  SP    L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVIILNEVTGKDESYLILGPWESNPDEGIISYKSPFGENLL 870

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
               GD ++         Y + ++ 
Sbjct: 871 DSREGDSLNFIINNTNFKYFVKKIE 895


>gi|224532243|ref|ZP_03672875.1| transcription elongation factor GreA (Transcript cleavage
           factorgreA) [Borrelia valaisiana VS116]
 gi|224511708|gb|EEF82114.1| transcription elongation factor GreA (Transcript cleavage
           factorgreA) [Borrelia valaisiana VS116]
          Length = 900

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 75/145 (51%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL++ ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 751 LNKKQKELKYLKEVEIPENSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 810

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  ++Y I+G  E++   G++S  SP    L+
Sbjct: 811 NAKVIDTKDLQSSVVGFGTKVIILNEATGKDESYLILGPWESNPDEGIISYKSPFGENLL 870

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
             + GD ++         Y + ++ 
Sbjct: 871 DSKEGDSLNFVINNTNFRYFVKKIE 895


>gi|269957418|ref|YP_003327207.1| GreA/GreB family elongation factor [Xylanimonas cellulosilytica DSM
           15894]
 gi|269306099|gb|ACZ31649.1| GreA/GreB family elongation factor [Xylanimonas cellulosilytica DSM
           15894]
          Length = 160

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 8/156 (5%)

Query: 1   MVDKI--PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T +  D+++ EL       R  I + I+ AR  GDL EN  Y AA+E Q  
Sbjct: 1   MSDTTVTWLTQEAHDRLKAELENLSGPARTEIAERIAAARDEGDLKENGGYHAAREEQAK 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS- 117
           NE R+ EL   +   +V          +     V L  +       + +   + A     
Sbjct: 61  NEARIRELTEKLRTVQVGTPPDDGMVEVGMLVDVRLAGEPM----TFLLGSREIAGTTDV 116

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEI 152
            + S +SP+  A+ G  +GD +S  AP G E T EI
Sbjct: 117 DVYSPTSPLGAAIDGHSIGDTVSYTAPNGKEFTVEI 152


>gi|160946713|ref|ZP_02093916.1| hypothetical protein PEPMIC_00671 [Parvimonas micra ATCC 33270]
 gi|158447097|gb|EDP24092.1| hypothetical protein PEPMIC_00671 [Parvimonas micra ATCC 33270]
          Length = 160

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 1/134 (0%)

Query: 24  QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83
             +R  I + I  AR +GDLSEN+EY  AK  Q   E ++ +L+N+I  A++ID   +  
Sbjct: 25  TVKRKEIAEKIKIARDFGDLSENSEYDEAKNEQAQIEEKIVKLDNMIANAKIIDEVELDT 84

Query: 84  DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
             +  GATV+LV+  S  K  Y IVG  E++   G +S  SP+ +A++GK+ G+ + V  
Sbjct: 85  KTVNVGATVTLVQVESKKKLEYTIVGSAESNPLEGKISNESPVGKAILGKKKGNKVQVQL 144

Query: 144 PGG-EKTYEILQVL 156
           P G    Y+I  + 
Sbjct: 145 PNGNVVEYKIQNIK 158


>gi|72080995|ref|YP_288053.1| transcription elongation factor GreA [Mycoplasma hyopneumoniae
           7448]
 gi|123761607|sp|Q4A759|GREA_MYCH7 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|71914119|gb|AAZ54030.1| transcription elongation factor [Mycoplasma hyopneumoniae 7448]
          Length = 160

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 94/153 (61%), Gaps = 2/153 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           DKI +T +  ++I++EL      ER  +I+ I +AR+ GDLSENAEY  A+E Q + E R
Sbjct: 7   DKILLTQQKLEEIEKELEHLINVERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESR 66

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELE II++A++I     S  R++ G+ VSL    SG+ + +QIV   +AD     +S 
Sbjct: 67  IRELETIISKAKIIKADLGS-SRVSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISN 125

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SPIA+AL+G+  GD + V+    + +  IL+V
Sbjct: 126 FSPIAQALLGQHQGDEVEVDV-NEKYSVRILEV 157


>gi|312138729|ref|YP_004006065.1| transcription elongation factor grea/greb [Rhodococcus equi 103S]
 gi|325676579|ref|ZP_08156257.1| transcription elongation factor GreA [Rhodococcus equi ATCC 33707]
 gi|311888068|emb|CBH47380.1| transcription elongation factor GreA/GreB [Rhodococcus equi 103S]
 gi|325552757|gb|EGD22441.1| transcription elongation factor GreA [Rhodococcus equi ATCC 33707]
          Length = 164

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 5/151 (3%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +     +T +  D+++ EL       RP I   I+E R  GDL EN  Y AA+E Q  
Sbjct: 1   MTETQVTWLTQESHDRLKNELDQLIAN-RPVIAAEINERREEGDLKENGGYHAAREEQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQ 116
            E R+ +L+ ++  A+V +  T SG  +         + +  D + + I   +E   D +
Sbjct: 60  QEARIRQLQELLNNAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDNK 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE 147
             + S +SP+  AL+  ++G+      P G 
Sbjct: 120 LEVYSPNSPLGGALLNAKVGETREYTLPNGS 150


>gi|323359453|ref|YP_004225849.1| transcription elongation factor [Microbacterium testaceum StLB037]
 gi|323275824|dbj|BAJ75969.1| transcription elongation factor [Microbacterium testaceum StLB037]
          Length = 163

 Score =  100 bits (248), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 73/151 (48%), Gaps = 3/151 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T   +D++ QEL       R  I K I  AR  GDL EN  Y AAK+ Q   E R+  L
Sbjct: 10  LTQDAYDRLAQELEHLSTTGREEIAKRIEIAREEGDLKENGGYHAAKDEQGKQEARIRTL 69

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           + ++  A+V +     G   +   TV       G++K      +  A+ +  + S +SP+
Sbjct: 70  QQLLKDAKVGEAPESHGVVES--GTVVTAVVAGGEEKFLLGNREIAANSELDVYSEASPL 127

Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156
             A+IG + G+  S  AP G E + EI++V 
Sbjct: 128 GAAIIGLKEGEKGSYTAPNGKEISVEIVKVE 158


>gi|227871734|ref|ZP_03990142.1| possible transcription elongation factor [Oribacterium sinus F0268]
 gi|227842422|gb|EEJ52644.1| possible transcription elongation factor [Oribacterium sinus F0268]
          Length = 167

 Score =  100 bits (248), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 53/153 (34%), Positives = 88/153 (57%), Gaps = 4/153 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M ++  +T +   KI+ E++ R+ E RP++I+A+ EARA GDLSEN EY AAK+ +N NE
Sbjct: 1   MSEE--LTREDVRKIEAEIQKRKLEIRPKLIEAVKEARAQGDLSENFEYYAAKKEKNQNE 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LE ++  A+VI  +      +    TV +      +++ Y++V         G +
Sbjct: 59  SRIRYLERVLKFAKVIS-TKSEEGVVGINDTVVVYFPEDKEEECYRLVTSIRGQSLEGRI 117

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
           S  SP+ +AL+GK +G+ + V   GG  +Y +L
Sbjct: 118 SNQSPLGKALMGKRVGEEVEVFLEGGS-SYTVL 149


>gi|229819572|ref|YP_002881098.1| transcription elongation factor GreA [Beutenbergia cavernae DSM
           12333]
 gi|229565485|gb|ACQ79336.1| transcription elongation factor GreA [Beutenbergia cavernae DSM
           12333]
          Length = 160

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 4/143 (2%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T   FD+++ E        R  I   I  AR  GDL EN  Y AA+E Q   E R+ +
Sbjct: 7   WLTQDAFDRLKAEHDHLTGVGRVEIADKIEAAREEGDLKENGGYHAAREEQAKQEARIRQ 66

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124
           LE I+  A+V +        +  G  V+   K +GD+  + +   + A D    + S SS
Sbjct: 67  LEEILRTAQVGEAPADD-GVVEPGMVVTA--KVAGDEMRFLLGSREVAGDTDLDVYSPSS 123

Query: 125 PIARALIGKELGDIISVNAPGGE 147
           P+  A++GK++G+      P G+
Sbjct: 124 PLGAAIMGKKVGEKAEYRTPSGK 146


>gi|229491945|ref|ZP_04385765.1| transcription elongation factor GreA [Rhodococcus erythropolis
           SK121]
 gi|229321158|gb|EEN86959.1| transcription elongation factor GreA [Rhodococcus erythropolis
           SK121]
          Length = 167

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 6/159 (3%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +     +T +  D+++ EL       RP I   I+E R  GDL EN  Y AA+E Q  
Sbjct: 4   MTETQVTWLTQESHDRLKNELDQLIAN-RPVIAAEINERREEGDLKENGGYHAAREEQGQ 62

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQ 116
            E R+ +L+ ++  A+V +  T SG  +         + +  D + + I   +E   D +
Sbjct: 63  QEARIRQLQELLNSAKVGEAPTQSGVALPGSVVKVYYDGDESDTETFLIATREEGARDAK 122

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
             + S +SP+  AL+  ++GD    N P G      +L 
Sbjct: 123 LEVYSPNSPLGGALLEAKVGDTREYNLPNGSTMKVTLLS 161


>gi|184156278|ref|YP_001844618.1| transcription elongation factor GreA [Lactobacillus fermentum IFO
           3956]
 gi|183227622|dbj|BAG28138.1| elongation factor GreA [Lactobacillus fermentum IFO 3956]
          Length = 160

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 9/161 (5%)

Query: 2   VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           + KI    +T  G+  I++++   +Q +RP +I  +  ARA GDLSEN EY  AK     
Sbjct: 1   MAKIYYQEMTPAGYRAIEEQIEALKQ-KRPTLITRLKAARALGDLSENTEYSTAKRELRH 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD---V 115
            E R+  L+  +T A+VID+S     ++A G  V++   +  ++  YQIVG  +A+   +
Sbjct: 60  LESRLRYLDKQLTYAKVIDVSDD--GKVALGKVVTIRFLDDQEEATYQIVGRHQAEQASL 117

Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
              +++  SP+  AL G   G  ++V+AP       I+ V 
Sbjct: 118 TEEVLAFDSPLGLALKGHTAGTTVTVHAPAASYQVTIITVK 158


>gi|227514075|ref|ZP_03944124.1| transcription elongation factor [Lactobacillus fermentum ATCC
           14931]
 gi|260662496|ref|ZP_05863391.1| elongation factor GreA [Lactobacillus fermentum 28-3-CHN]
 gi|227087556|gb|EEI22868.1| transcription elongation factor [Lactobacillus fermentum ATCC
           14931]
 gi|260553187|gb|EEX26130.1| elongation factor GreA [Lactobacillus fermentum 28-3-CHN]
          Length = 160

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 85/161 (52%), Gaps = 9/161 (5%)

Query: 2   VDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           + KI    +T  G+  I++++   +Q +RP +I  +  ARA GDLSEN EY  AK     
Sbjct: 1   MAKIYYQEMTPAGYRAIEEQIEALKQ-KRPTLITRLKAARALGDLSENTEYSTAKRELRH 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD---V 115
            E R+  L+  +T A+VID+S     ++A G  V++   +  ++  YQIVG  +A+   +
Sbjct: 60  LESRLRYLDKQLTYAKVIDVSDD--GKVALGKVVTIRFLDDQEEATYQIVGRHQAEQASL 117

Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
              +++  SP+  AL G   G  ++V+AP       I+ V 
Sbjct: 118 TEEVLAFDSPLGLALKGHTAGTTVTVHAPAASYQVTIITVK 158


>gi|225551922|ref|ZP_03772862.1| transcription elongation factor GreA [Borrelia sp. SV1]
 gi|225370920|gb|EEH00350.1| transcription elongation factor GreA [Borrelia sp. SV1]
          Length = 901

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 74/145 (51%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K Q+EL++ ++ E P   K I +AR  GDL ENAEY +AKE Q     R+  L   I 
Sbjct: 752 LNKKQKELKYLKEVEIPGNSKEIGKARELGDLKENAEYHSAKEKQQFLTKRLNSLMLEIE 811

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A+VID   +    + FG  V ++ + +G  ++Y I+G  E++   G++S  SP    L+
Sbjct: 812 NAKVIDTKDLQSSVVGFGTKVVILNEATGKDESYLILGPWESNPDEGIISYKSPFGENLL 871

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
               GD ++         Y + ++ 
Sbjct: 872 DSREGDSLNFVINNTNFKYFVKKIE 896


>gi|315223125|ref|ZP_07864993.1| transcription elongation factor GreA [Streptococcus anginosus
           F0211]
 gi|315187814|gb|EFU21561.1| transcription elongation factor GreA [Streptococcus anginosus
           F0211]
          Length = 160

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 64/157 (40%), Positives = 98/157 (62%), Gaps = 1/157 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K  P+T +  +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLEEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++   ++ D +A G TV++ E    D++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDAVAQDEVAIGKTVTIQEVGETDEEVYMIVGAAGADAFAGK 120

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VS  SPI +ALIGK+ GD  +V  P G    +IL+V 
Sbjct: 121 VSNESPIGQALIGKKTGDTATVETPVGSYDVKILKVE 157


>gi|71894015|ref|YP_279461.1| transcription elongation factor GreA [Mycoplasma hyopneumoniae J]
 gi|123775457|sp|Q4A921|GREA_MYCHJ RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|71852142|gb|AAZ44750.1| transcription elongation factor [Mycoplasma hyopneumoniae J]
          Length = 160

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 61/153 (39%), Positives = 94/153 (61%), Gaps = 2/153 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           DKI +T +  ++I++EL      ER  +I+ I +AR+ GDLSENAEY  A+E Q + E R
Sbjct: 7   DKILLTQQKLEEIEKELEHLINVERVNVIQEIKDARSQGDLSENAEYDVAREKQGIIESR 66

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELE II++A++I     S  R++ G+ VSL    SG+ + +QIV   +AD     +S 
Sbjct: 67  IRELETIISKAKIIKADLGS-SRVSIGSKVSLENVESGEIQTFQIVSSIDADPFKSKISN 125

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SPIA+AL+G+  GD + V+    + +  IL+V
Sbjct: 126 FSPIAQALLGQHQGDEVEVDV-NEKYSVRILEV 157


>gi|302338551|ref|YP_003803757.1| transcription elongation factor GreA [Spirochaeta smaragdinae DSM
           11293]
 gi|301635736|gb|ADK81163.1| transcription elongation factor GreA [Spirochaeta smaragdinae DSM
           11293]
          Length = 894

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 71/150 (47%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VT K F+  +Q+L+     E     K I  A   GDL ENAEY+A KE Q L   +M +L
Sbjct: 740 VTRKTFEAKKQQLQHINDVEMKETSKEIGAAIELGDLKENAEYKAGKEKQELLNIQMQKL 799

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           ++ I RA + D +     +I+F   V+L   ++  K+ Y   G  E++    ++S  SP 
Sbjct: 800 KDEIDRAVIFDPADRDTSKISFATKVTLENLDTKKKETYSFFGPWESNPNENIISYLSPF 859

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
              L   + G+ +          Y +L++ 
Sbjct: 860 GGKLWNHKEGEDLEFEINERVYHYSVLKIE 889


>gi|71894394|ref|YP_278502.1| transcription elongation factor GreA [Mycoplasma synoviae 53]
 gi|71851182|gb|AAZ43791.1| transcription elongation factor GreA [Mycoplasma synoviae 53]
          Length = 157

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 88/153 (57%), Gaps = 5/153 (3%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +KI ++ +  DK ++E     + +R  I  A+ EARA GDLSENAEY  A++ Q + E R
Sbjct: 4   EKIFLSQETLDKYKKEYEKLVKVDRVEIQNALKEARAQGDLSENAEYDVARDKQAVVEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ELE I+ +A++I       + I+ G+ V+ ++ ++  +    I+G  +AD  +  +S 
Sbjct: 64  ILELEGILDKAQLI--KHKDENTISIGSKVTFLDLSTNKEDEVTIMGIHDADPFNKKISN 121

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SP+A A++ K+ GD + V    G + YEI  +
Sbjct: 122 YSPLATAMMSKKEGDTVEVE---GLEKYEIKII 151


>gi|332671448|ref|YP_004454456.1| GreA/GreB family elongation factor [Cellulomonas fimi ATCC 484]
 gi|332340486|gb|AEE47069.1| GreA/GreB family elongation factor [Cellulomonas fimi ATCC 484]
          Length = 161

 Score = 99.9 bits (247), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 6/150 (4%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +D++  EL   + E R  I   I+ AR  GDL EN  Y AA+E Q   E R+ E
Sbjct: 9   WLTQEAYDRLTAELDRLKGEGRAEITARIAAARDEGDLKENGGYHAAREEQAKQEARIRE 68

Query: 66  LENIITRAEVIDISTMSGDRIAFGAT-VSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           LE  +   ++               T V   ++      + +I G  E DV     S +S
Sbjct: 69  LEAKLRNVQIGTPPDDGVVEPGMVVTAVVAGDEMVFLLGSREIAGTAEIDVF----SPTS 124

Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEIL 153
           P+  A+ G ++GD  S  AP G E   +I+
Sbjct: 125 PLGAAINGTKVGDTTSYTAPNGKEIPVQIV 154


>gi|317508388|ref|ZP_07966060.1| transcription elongation factor GreA [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253312|gb|EFV12710.1| transcription elongation factor GreA [Segniliparus rugosus ATCC
           BAA-974]
          Length = 163

 Score = 99.9 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M + +  +T +  D+++ EL       RP +   I+E R  GDL EN  Y AA+E Q   
Sbjct: 1   MTENVTWLTQEAHDRLKVELDTLIAN-RPALAAEINERREEGDLKENGGYHAAREEQGQQ 59

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQS 117
           E R+ +L++++  A+V    T SG  +         + +  D + + I   +E     + 
Sbjct: 60  EARIRQLQDLLATAKVGAAPTQSGVALPGSVVTVYYDGDKNDTETFLIATREEGAQSGKL 119

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            + S +SP+  AL+  ++G+      P G     +++V 
Sbjct: 120 EVYSPNSPLGGALLDAKVGETREYTVPNGA----VVKVT 154


>gi|239917044|ref|YP_002956602.1| transcription elongation factor GreA [Micrococcus luteus NCTC 2665]
 gi|281414493|ref|ZP_06246235.1| transcription elongation factor GreA [Micrococcus luteus NCTC 2665]
 gi|239838251|gb|ACS30048.1| transcription elongation factor GreA [Micrococcus luteus NCTC 2665]
          Length = 164

 Score = 99.9 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 6/154 (3%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +D++ +EL       R  II+ I  AR  GDL EN  Y AA+E Q+ NEGR+AE
Sbjct: 10  WLTQEAYDRLSKELEHISGPGRQEIIERIEAARDEGDLKENGGYHAAREEQSKNEGRIAE 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
           L++++  A V + +      +  G  V+     +GD+  +     + A  D    + S  
Sbjct: 70  LKHLLETARVGEAAEND-GAVHPGTVVTA--VVAGDEMTFLFGNREIAADDESLEVYSER 126

Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
           SP+  A+ G + GD +S  AP G+    EI  V 
Sbjct: 127 SPLGEAINGAKQGDKVSYTAPNGKDIKVEIKDVQ 160


>gi|169628294|ref|YP_001701943.1| transcription elongation factor GreA [Mycobacterium abscessus ATCC
           19977]
 gi|238688921|sp|B1MKJ7|GREA_MYCA9 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|169240261|emb|CAM61289.1| Hypothetical transcription elongation factor GreA [Mycobacterium
           abscessus]
          Length = 164

 Score = 99.9 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 72/151 (47%), Gaps = 5/151 (3%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T +  D+++ EL       RP I   I+E R  GDL EN  Y AA+E Q  
Sbjct: 1   MTDTQVTWLTQESHDRLKAELDQLIAN-RPVIAAEINERREEGDLRENGGYHAAREEQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQ 116
            E R+ +L+ ++  A+V +  T SG  +         + + GD + + I   QE   D +
Sbjct: 60  QEARIRQLQELLNNAKVGEAPTQSGVALPGSVVKVYYDGDKGDTETFLIATRQEGVKDGK 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE 147
             + S SSP+  ALI  ++G+  S   P G 
Sbjct: 120 LEVYSPSSPLGGALIDAKVGETRSYTVPNGT 150


>gi|149197307|ref|ZP_01874359.1| transcript cleavage factor/unknown domain fusion protein
           [Lentisphaera araneosa HTCC2155]
 gi|149139853|gb|EDM28254.1| transcript cleavage factor/unknown domain fusion protein
           [Lentisphaera araneosa HTCC2155]
          Length = 693

 Score = 99.9 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 6/150 (4%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           + + +  +Q+E       E P   KAI+ AR +GDL EN E++AAK+ Q   + R+ EL+
Sbjct: 537 SQRSYKALQEEHERLVNTEIPDNSKAIAAAREHGDLRENFEFRAAKDRQKYLQLRVGELD 596

Query: 68  NIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
            ++ +    D S     +R+   A V++  K+   +  Y IVG  + D     +S  +P+
Sbjct: 597 AMLNKIGPTDFSEFKVKNRVIPAAKVTI--KSPEAETTYSIVGMLDGDPDKNWLSFETPL 654

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
           A++++G ++GD I +  PGG+   EIL V 
Sbjct: 655 AKSMLGHQVGDSIEL--PGGD-EAEILAVE 681


>gi|225377148|ref|ZP_03754369.1| hypothetical protein ROSEINA2194_02794 [Roseburia inulinivorans DSM
           16841]
 gi|225211053|gb|EEG93407.1| hypothetical protein ROSEINA2194_02794 [Roseburia inulinivorans DSM
           16841]
          Length = 167

 Score = 99.5 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 84/151 (55%), Gaps = 2/151 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +   K+++E+ +R+   R   ++A+ EARA+GDLSEN EY AAK+ +N NE R+  L
Sbjct: 5   LTEQDIKKMEEEIEYRKLVVRKNALEAVKEARAHGDLSENFEYHAAKKDKNQNESRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E +I  A++I   +   +      TV++  ++  +++ Y+IV     +    L+S  SP+
Sbjct: 65  EKMIRTAKIISTDSADDEVG-MNNTVTVYFEDDDEEETYKIVTTIRGNSLKNLISNESPL 123

Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156
            +AL+G ++GD   V          EI ++ 
Sbjct: 124 GKALLGHKIGDRCEVKVNDNYSYFVEIRKIE 154


>gi|227876654|ref|ZP_03994763.1| elongation factor GreA [Mobiluncus mulieris ATCC 35243]
 gi|269976185|ref|ZP_06183181.1| transcription elongation factor GreA [Mobiluncus mulieris 28-1]
 gi|306817605|ref|ZP_07451348.1| transcription elongation factor GreA [Mobiluncus mulieris ATCC
           35239]
 gi|307699804|ref|ZP_07636855.1| putative transcription elongation factor GreA [Mobiluncus mulieris
           FB024-16]
 gi|227842551|gb|EEJ52751.1| elongation factor GreA [Mobiluncus mulieris ATCC 35243]
 gi|269935514|gb|EEZ92052.1| transcription elongation factor GreA [Mobiluncus mulieris 28-1]
 gi|304649647|gb|EFM46929.1| transcription elongation factor GreA [Mobiluncus mulieris ATCC
           35239]
 gi|307614842|gb|EFN94060.1| putative transcription elongation factor GreA [Mobiluncus mulieris
           FB024-16]
          Length = 161

 Score = 99.5 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 7/159 (4%)

Query: 1   MVD---KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M +   K  +T   FD++Q EL  R    R  I K I  AR  GDL EN  Y AA++ Q 
Sbjct: 1   MSEAGKKKWMTQAAFDRLQSELDERSGSIRAEITKKIDLARREGDLKENGGYHAARDEQA 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
            NE R+ EL+ I+  AEV + +      I+ G  V         +         E  +  
Sbjct: 61  HNETRILELQEILKHAEVGEATDD--GTISPGCVVEAKVGKRKIRFLLGSRVADEG-MDI 117

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
            + S  +P+  AL+G   GD +   AP G+K   E+L V
Sbjct: 118 DVFSPDAPLGAALLGHREGDQVEYLAPTGKKIQVEVLSV 156


>gi|145222636|ref|YP_001133314.1| transcription elongation factor GreA [Mycobacterium gilvum PYR-GCK]
 gi|315443101|ref|YP_004075980.1| transcription elongation factor GreA [Mycobacterium sp. Spyr1]
 gi|145215122|gb|ABP44526.1| transcription elongation factor GreA [Mycobacterium gilvum PYR-GCK]
 gi|315261404|gb|ADT98145.1| transcription elongation factor GreA [Mycobacterium sp. Spyr1]
          Length = 164

 Score = 99.5 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 5/150 (3%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T + +D+++ EL       RP I   I++ R  GDL EN  Y AA+E Q  
Sbjct: 1   MTDTQVTWLTEEAYDRLKAELDQLIAN-RPVIAAEINDRREEGDLRENGGYHAAREQQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQ 116
            E R+ +L+ ++  A+V +    SG  +         + +  D + + I   ++   D +
Sbjct: 60  EEARIRQLQELLNDAKVGEAPKQSGIALPGSVVKVYYDDDENDTETFLIGTREQGVNDGK 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146
             + S +SP+  ALI  ++G+  S   P G
Sbjct: 120 LEVYSPNSPLGGALIDAKVGESRSYTVPSG 149


>gi|331003037|ref|ZP_08326549.1| hypothetical protein HMPREF0491_01411 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413081|gb|EGG92456.1| hypothetical protein HMPREF0491_01411 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 164

 Score = 99.5 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 3/156 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +   +T +   KI+ E+  R+   RP++I+A+ EARA+GDLSEN EY AAK  +N NE
Sbjct: 1   MAET--LTKEDIKKIEAEIEERKLVLRPQLIEAVKEARAHGDLSENFEYYAAKREKNKNE 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LE ++    V +  T           V L  +   + + ++IV     D   G +
Sbjct: 59  SRINYLERMLRFCNVYEDKTEDDQVG-IDKVVELYFEEDDESEKFKIVTSIRGDSLEGRL 117

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           SI SPI +A++GK+ GD + V    G    +I+ + 
Sbjct: 118 SIESPIGKAIVGKKKGDRVRVPVGDGGYFVKIMSIE 153


>gi|312868578|ref|ZP_07728773.1| transcription elongation factor GreA [Lactobacillus oris
           PB013-T2-3]
 gi|311095875|gb|EFQ54124.1| transcription elongation factor GreA [Lactobacillus oris
           PB013-T2-3]
          Length = 168

 Score = 99.5 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G+ +I+ E+   Q  +RP  I  +  ARA GDLSEN EY  AK      E R+  L
Sbjct: 18  MTKAGYQEIEDEIARLQA-QRPAKIDQLKAARALGDLSENTEYSTAKRELRHLESRLRYL 76

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              +  +E+I  +      +  G TV+L   +  D   YQIVG QEAD+    VS  SP+
Sbjct: 77  NKQLQYSEIITPADAKQ--VDLGTTVTLRFDDDNDVVTYQIVGKQEADLAKQKVSFDSPL 134

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
            RA++ +     ++V AP       I+++
Sbjct: 135 GRAIMHQPAATTVTVQAPQSSYQVTIIEI 163


>gi|46198988|ref|YP_004655.1| anti-cleavage anti-greA transcription factor gfh1 [Thermus
           thermophilus HB27]
 gi|109157536|pdb|2F23|A Chain A, Crystal Structure Of Grea Factor Homolog 1 (Gfh1) Protein
           Of Thermus Thermophilus
 gi|109157537|pdb|2F23|B Chain B, Crystal Structure Of Grea Factor Homolog 1 (Gfh1) Protein
           Of Thermus Thermophilus
 gi|18034647|gb|AAL57612.1|AF456235_1 anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
           thermophilus]
 gi|46196612|gb|AAS81028.1| anti-cleavage anti-greA transcription factor gfh1 [Thermus
           thermophilus HB27]
          Length = 156

 Score = 99.5 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 90/157 (57%), Gaps = 5/157 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  ++ +T  G++++ Q+L   ++E      K + E     D  +++  +AAK+ +   E
Sbjct: 1   MAREVKLTKAGYERLMQQLER-ERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV--QSG 118
            R+  LE+I++RA +++  +   + I  G+ V L +  SG++ + Q+V   EA+V     
Sbjct: 60  ARIDSLEDILSRAVILEEGSG--EVIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPM 117

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S +SP+ +AL+G  +GD++S++ P G++ + ++ +
Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGKREFRVVAI 154


>gi|223940861|ref|ZP_03632689.1| GreA/GreB family elongation factor [bacterium Ellin514]
 gi|223890471|gb|EEF57004.1| GreA/GreB family elongation factor [bacterium Ellin514]
          Length = 606

 Score = 99.5 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 82/145 (56%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            ++ + E     Q++ P   K I+ AR+YGDL EN EY+AAKE+Q +   R AELE+ + 
Sbjct: 457 LERRKNEYAELVQKKIPANSKEIAIARSYGDLRENHEYKAAKEMQKILMRRKAELESELV 516

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
           RA   D      D ++ G  V + + NS   +++ I+G  ++D +  ++S  +P+A++L+
Sbjct: 517 RARGTDYLNPKTDAVSIGTIVKVTDLNSSHIEHFNILGAWDSDPEKNVISYLAPLAQSLL 576

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
            ++ G+ +     G ++ + I ++ 
Sbjct: 577 NRKPGEEVDYEMDGQKRRFRIDEIT 601


>gi|134097505|ref|YP_001103166.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL
           2338]
 gi|291009354|ref|ZP_06567327.1| transcription elongation factor GreA [Saccharopolyspora erythraea
           NRRL 2338]
 gi|166200697|sp|A4F866|GREA_SACEN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|133910128|emb|CAM00241.1| transcription elongation factor G [Saccharopolyspora erythraea NRRL
           2338]
          Length = 162

 Score = 99.5 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 4/157 (2%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +     +T   FD+++ EL       RP I   I+EAR  GDL EN  Y AA+E Q  
Sbjct: 1   MSETQVTWLTQDAFDRLKSELDELVGN-RPVIAAKINEAREEGDLKENGGYHAAREEQGH 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ +L+ ++  A+V D+ T +G            +     +K      ++ A     
Sbjct: 60  LESRIRQLQELLRTAKVGDVPTEAGVAKPGSVLTVRYDDEDETEKFLLATREEGAHGDLE 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPG-GEKTYEILQ 154
           + S SSP+ +AL+  + G+      P  G     +++
Sbjct: 120 VYSPSSPLGQALLDAKEGETREYELPNGGTMKVTLVK 156


>gi|15828286|ref|NP_302549.1| transcription elongation factor GreA [Mycobacterium leprae TN]
 gi|221230763|ref|YP_002504179.1| transcription elongation factor GreA [Mycobacterium leprae Br4923]
 gi|6226624|sp|P46808|GREA_MYCLE RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|254799564|sp|B8ZT53|GREA_MYCLB RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|13093979|emb|CAC31909.1| transcription elongation factor G [Mycobacterium leprae]
 gi|219933870|emb|CAR72491.1| transcription elongation factor G [Mycobacterium leprae Br4923]
          Length = 164

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 5/150 (3%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T +  D+++ EL       RP I   I++ R  GDL EN  Y AA+E Q  
Sbjct: 1   MTDTQVTWLTQESHDRLKAELDQLIAN-RPVIAAEINDRREEGDLRENGGYHAAREEQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQ 116
            E R+ +L++++  A+V +    SG  +           +  D + + I   QE   + +
Sbjct: 60  QEARIRQLQDLLNIAKVGEAPKQSGVALPGSVVKVYYNDDKSDTETFLIATRQEGVNEGK 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146
             + S +SP+  ALI  ++G+  S   P G
Sbjct: 120 LEVYSPNSPLGGALIDAKVGETRSYTVPNG 149


>gi|257069437|ref|YP_003155692.1| transcription elongation factor GreA [Brachybacterium faecium DSM
           4810]
 gi|256560255|gb|ACU86102.1| transcription elongation factor GreA [Brachybacterium faecium DSM
           4810]
          Length = 163

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 1/142 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T   +D++ +EL   +   R  I + I+ AR  GDL EN  Y AA+E Q   E R+A+
Sbjct: 9   WLTQDAYDRLAKELEELEGPGRTEIAERIAAARDEGDLKENGGYHAAREEQGKMEARIAD 68

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ ++  A V +        +  G  V +                 + D    + S  SP
Sbjct: 69  LQRLLKNAVVGEAPKDD-GVVEPGMVVVISMAGKERTFLLGNREIADGDEDLEVYSSESP 127

Query: 126 IARALIGKELGDIISVNAPGGE 147
           +  A+ G  +GD +   AP G+
Sbjct: 128 LGSAIHGSRVGDTVDYTAPNGK 149


>gi|153855392|ref|ZP_01996541.1| hypothetical protein DORLON_02555 [Dorea longicatena DSM 13814]
 gi|149752212|gb|EDM62143.1| hypothetical protein DORLON_02555 [Dorea longicatena DSM 13814]
          Length = 167

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 88/148 (59%), Gaps = 1/148 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T     KI++E+ +R+   R + ++A+ EARA GDLSEN EY+AAK+ +N NE R+  L
Sbjct: 5   LTESDVKKIKEEIEYRKIVVRKKELEAVKEARAQGDLSENFEYKAAKQDKNRNESRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E ++  A+++  ++ + +      TV +  ++  + + Y++V     +   GL+SI SP+
Sbjct: 65  ERMLKNAKIVSDTSKADEVG-INNTVEVYFEDDDETETYRLVTSIRGNSLQGLISIESPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
            +A+ G ++GD + V   G +  Y +++
Sbjct: 124 GKAIQGHKVGDRVLVKTNGNDGYYIVIK 151


>gi|294790721|ref|ZP_06755879.1| transcription elongation factor GreA [Scardovia inopinata F0304]
 gi|294458618|gb|EFG26971.1| transcription elongation factor GreA [Scardovia inopinata F0304]
          Length = 160

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 54/155 (34%), Positives = 84/155 (54%), Gaps = 7/155 (4%)

Query: 3   DKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           DK+ + T + +DK+++EL +R+ E R  I + I+ ARA GDLSEN  YQAA+E Q  NEG
Sbjct: 4   DKVYMLTQEAYDKLREELTYREGELREEIKEKIAAARAEGDLSENGGYQAAREEQGKNEG 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV- 120
           R+ EL   +  ++++        ++  G+ V L  + +G +  Y +     A      + 
Sbjct: 64  RIQELTVKLRDSQILKAPNP--GKVGPGSLVVL--EIAGREMTYVLGSHDLAVATDYDIV 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
           S  SPI  A+ GK+ GD +S  AP G   T  I +
Sbjct: 120 SPESPIGAAINGKKTGDTVSYTAPNGRNITVTIKE 154


>gi|55981011|ref|YP_144308.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
           thermophilus HB8]
 gi|83754983|pdb|2EUL|A Chain A, Structure Of The Transcription Factor Gfh1.
 gi|83754984|pdb|2EUL|B Chain B, Structure Of The Transcription Factor Gfh1.
 gi|83754985|pdb|2EUL|C Chain C, Structure Of The Transcription Factor Gfh1.
 gi|83754986|pdb|2EUL|D Chain D, Structure Of The Transcription Factor Gfh1.
 gi|313754180|pdb|3AOH|X Chain X, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
 gi|313754181|pdb|3AOH|Y Chain Y, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
 gi|313754182|pdb|3AOH|Z Chain Z, Rna Polymerase-Gfh1 Complex (Crystal Type 1)
 gi|313754204|pdb|3AOI|X Chain X, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
 gi|313754205|pdb|3AOI|Y Chain Y, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
 gi|313754206|pdb|3AOI|Z Chain Z, Rna Polymerase-Gfh1 Complex (Crystal Type 2)
 gi|55772424|dbj|BAD70865.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
           thermophilus HB8]
          Length = 156

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 89/157 (56%), Gaps = 5/157 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  ++ +T  G++++ Q+L   ++E      K + E     D  +++  +AAK+ +   E
Sbjct: 1   MAREVKLTKAGYERLMQQLER-ERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV--QSG 118
            R+  LE+I++RA +++  +   + I  G+ V L +  SG++ + Q+V   EA+V     
Sbjct: 60  ARIDSLEDILSRAVILEEGSG--EVIGLGSVVELEDPLSGERLSVQVVSPAEANVLDTPM 117

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S +SP+ +AL+G  +GD++S++ P G + + ++ +
Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGRREFRVVAI 154


>gi|325955918|ref|YP_004286528.1| transcription elongation factor GreA [Lactobacillus acidophilus
           30SC]
 gi|325332483|gb|ADZ06391.1| transcription elongation factor GreA [Lactobacillus acidophilus
           30SC]
 gi|327182753|gb|AEA31200.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
           1118]
          Length = 143

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 13/150 (8%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   ++  RPR IK +  ARA GDLSEN EY  AK             
Sbjct: 7   MTPEGYKQIEDEIARLKK-GRPRRIKILQAARALGDLSENTEYTEAKRYLGKQLKYT--- 62

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
                      + T    ++  G TV L   +  D + Y+IVG  EAD+  G +S  SP+
Sbjct: 63  ---------EIVETKDDGKVDLGKTVVLKFDDDEDTEEYKIVGRMEADLADGKISFGSPL 113

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A++ KE G   +V AP GE    I++V 
Sbjct: 114 GQAIMKKEAGTTSTVGAPAGEYKVTIVEVK 143


>gi|261337288|ref|ZP_05965172.1| transcription elongation factor GreA [Bifidobacterium gallicum DSM
           20093]
 gi|270277656|gb|EFA23510.1| transcription elongation factor GreA [Bifidobacterium gallicum DSM
           20093]
          Length = 161

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/161 (34%), Positives = 81/161 (50%), Gaps = 11/161 (6%)

Query: 1   MVDKI-----PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKEL 55
           M D++      +T    DK+Q+EL WRQ E R  I + I+ ARA GDLSEN  YQAA+E 
Sbjct: 1   MADEVEEKVVLLTQDAVDKLQEELTWRQGEYRDEITERIAAARAEGDLSENGGYQAAREE 60

Query: 56  QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
           Q  NEGR+ EL   +  A++I+      +    G    +     G++  Y I     A  
Sbjct: 61  QGKNEGRINELIVKLRNAKIIEAP----EAGVVGNGSVVTIDLGGNEMTYVIGSRDIAVA 116

Query: 116 QS-GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
               ++S  SP+  A++G ++GD +S   P G E    I +
Sbjct: 117 TDIDVISPDSPVGAAIMGAKVGDTVSYTLPNGREMKVVIKE 157


>gi|225570871|ref|ZP_03779894.1| hypothetical protein CLOHYLEM_06975 [Clostridium hylemonae DSM
           15053]
 gi|225160333|gb|EEG72952.1| hypothetical protein CLOHYLEM_06975 [Clostridium hylemonae DSM
           15053]
          Length = 185

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/150 (31%), Positives = 85/150 (56%), Gaps = 1/150 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T     KI++E+ +R+   R + ++A+ EARA GDLSEN EY+AAK+ +N NE R+
Sbjct: 20  REQLTKSDVQKIKEEIEYRKLVVRKKELEAVKEARAQGDLSENFEYKAAKQDKNRNESRI 79

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             LE ++  A ++  ++   +      TV L  +   + + Y++V     +   G +SI 
Sbjct: 80  RYLEKMLKTARIVSDTSREDEVG-INNTVELYFEEDDETEKYRLVTSVRGNSLEGRISIE 138

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153
           SP+ +A++G + G+ + V A GG   Y ++
Sbjct: 139 SPLGKAILGHKEGERVKVTANGGSGYYVVI 168


>gi|160892694|ref|ZP_02073484.1| hypothetical protein CLOL250_00224 [Clostridium sp. L2-50]
 gi|156865735|gb|EDO59166.1| hypothetical protein CLOL250_00224 [Clostridium sp. L2-50]
          Length = 195

 Score = 99.1 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/152 (31%), Positives = 84/152 (55%), Gaps = 2/152 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T     K+++E+ +R+   R   ++A+ EARA GDLSEN EY AAK+ +N NE R+ 
Sbjct: 33  NQLTESDIKKMEEEIEYRKVVVRKEKLEAVKEARAQGDLSENFEYYAAKKDKNANEKRIR 92

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L+ ++  AE+I   +   +      TV +  +   ++  Y+IV     DV +G++S  S
Sbjct: 93  YLDRMVRTAEIIKDESADDEVG-LNNTVRVYFEEDEEEDTYRIVTTVREDVLNGIISNIS 151

Query: 125 PIARALIGKELGDIISVNAPGGE-KTYEILQV 155
           P+ +AL+G ++GD + V    G+     I ++
Sbjct: 152 PMGKALLGHKVGDRVEVVPGKGDPFHIVIREI 183


>gi|289705947|ref|ZP_06502321.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Micrococcus luteus SK58]
 gi|289557284|gb|EFD50601.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Micrococcus luteus SK58]
          Length = 164

 Score = 98.7 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 6/154 (3%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +D++ +EL       R  II+ I  AR  GDL EN  Y AA+E Q+ NEGR+AE
Sbjct: 10  WLTQEAYDRLSKELEHISGPGRQEIIERIEAARDEGDLKENGGYHAAREEQSKNEGRIAE 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSIS 123
           L++++  A V + +      +  G  V+     +GD+  +     + A  D    + S  
Sbjct: 70  LKHLLETARVGEAAEND-GAVHPGTVVTA--VVAGDEMTFLFGNREIAADDESLEVYSER 126

Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
           SP+  A+ G + GD +S  AP G+    E+  V 
Sbjct: 127 SPLGEAINGAKKGDKVSYTAPNGKDIKVEVKDVQ 160


>gi|115378949|ref|ZP_01466082.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1]
 gi|310818253|ref|YP_003950611.1| transcription elongation factor, GreA/GreB family [Stigmatella
           aurantiaca DW4/3-1]
 gi|115364025|gb|EAU63127.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1]
 gi|309391325|gb|ADO68784.1| Transcription elongation factor, GreA/GreB family [Stigmatella
           aurantiaca DW4/3-1]
          Length = 169

 Score = 98.7 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 74/155 (47%), Gaps = 16/155 (10%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           DK  +T +G+  +Q+EL        P   +   EA              A + +   E R
Sbjct: 26  DKRYITPEGYRALQEELARLLG---PEAGEEGQEA------------WGAADRKRERERR 70

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
              L   +    V+        R+ FGA V+L ++    +  Y+IVG  EADV++G +S+
Sbjct: 71  AHFLSETLEEVRVVAPEPSQEGRVFFGAWVTLEDEEGA-EVTYRIVGPDEADVKAGRLSV 129

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+GKE+G+ + V  P G   Y + +V +
Sbjct: 130 ESPLARALLGKEVGEAVPVERPRGAVEYTLTRVAY 164


>gi|75761030|ref|ZP_00741032.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74491486|gb|EAO54700.1| Transcription elongation factor greA [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 151

 Score = 98.7 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 2/125 (1%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  +   P+T +G  K++ EL   +   R  +++ I  AR++GDLSEN+EY AAK+ Q  
Sbjct: 18  MSTEKTYPMTQEGKQKLENELEQLKTVRRKEVVERIKIARSFGDLSENSEYDAAKDEQAF 77

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            EGR+ +LEN+I  A +I  +      +  G TV+  E  +GD++ Y IVG  EAD   G
Sbjct: 78  VEGRITQLENMIRNAVIIKDNGEVSTVVTLGKTVTFKELPNGDEEAYTIVGSAEADPFEG 137

Query: 119 LVSIS 123
            +S  
Sbjct: 138 RISNE 142


>gi|188584758|ref|YP_001916303.1| transcription elongation factor GreA [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349445|gb|ACB83715.1| transcription elongation factor GreA [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 164

 Score = 98.7 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 86/153 (56%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            ++ +T  G++++++EL   +   R  + + I  A ++GD+SEN+EY  AK  Q   EGR
Sbjct: 11  KEVVLTRGGYEELEEELEHLKTVRRKEVAERIKTAISFGDISENSEYDDAKNEQAFIEGR 70

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  LE ++  A+++D        ++ G TV L +    ++  Y IVG  E++     +S 
Sbjct: 71  IITLEKMLRNAKIVDKDETDNKVVSIGNTVVLKDLEYDEEVEYTIVGSAESNPTDQKISN 130

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SP+  A+IGK++G+++ V  P G   YEI+ +
Sbjct: 131 ESPVGEAIIGKKVGEVVEVKVPAGVIEYEIVDI 163


>gi|111022813|ref|YP_705785.1| transcription elongation factor GreA [Rhodococcus jostii RHA1]
 gi|226365321|ref|YP_002783104.1| transcription elongation factor GreA [Rhodococcus opacus B4]
 gi|110822343|gb|ABG97627.1| transcription elongation factor [Rhodococcus jostii RHA1]
 gi|226243811|dbj|BAH54159.1| transcription elongation factor GreA [Rhodococcus opacus B4]
          Length = 164

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 5/151 (3%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +     +T +  D+++ EL       RP I   I+E R  GDL EN  Y AA+E Q  
Sbjct: 1   MTETQVTWLTQESHDRLKSELDQLIAN-RPVIAAEINERREEGDLKENGGYHAAREEQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQ 116
            E R+ +L+ ++  A+V +  T SG  +         + +  D + + I   +E   D +
Sbjct: 60  QEARIRQLQELLNSAKVGEAPTQSGVALPGSVVKVYYDGDEKDTETFLIATREEGARDNK 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE 147
             + S +SP+  AL+  ++G+      P G 
Sbjct: 120 LEVYSPNSPLGGALLEAKVGETREYTLPNGS 150


>gi|307128689|ref|YP_003880719.1| putative transcription elongation factor GreB [Candidatus Sulcia
           muelleri CARI]
 gi|306483151|gb|ADM90021.1| putative transcription elongation factor GreB [Candidatus Sulcia
           muelleri CARI]
          Length = 158

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 89/137 (64%), Gaps = 1/137 (0%)

Query: 21  WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIST 80
             +  ER +IIKAISEAR  GDLSEN+EY AAKE Q + E ++  L+  ++   +I+IS 
Sbjct: 21  QLETIERKKIIKAISEARDKGDLSENSEYDAAKEAQKILELKIFNLKLKLSNTRLIEISK 80

Query: 81  MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
           +S  +++    V +   ++G+ +NY +V + E++++   +SI+SPIA  LIGK++GDIIS
Sbjct: 81  ISTSQVSIFTKVKIKNIDNGNYQNYTLVPESESNIKKNKISINSPIAIGLIGKKIGDIIS 140

Query: 141 VNAPGGE-KTYEILQVL 156
           +  P  +    +++++ 
Sbjct: 141 IKLPNNKIINLKLIKIK 157


>gi|120405620|ref|YP_955449.1| transcription elongation factor GreA [Mycobacterium vanbaalenii
           PYR-1]
 gi|166200681|sp|A1TE43|GREA_MYCVP RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|119958438|gb|ABM15443.1| transcription elongation factor GreA [Mycobacterium vanbaalenii
           PYR-1]
          Length = 164

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/150 (27%), Positives = 72/150 (48%), Gaps = 5/150 (3%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T + +D+++ EL       RP I   I++ R  GDL EN  Y AA+E Q  
Sbjct: 1   MTDTQVTWLTEESYDRLKAELDQLIAN-RPVIAAEINDRREEGDLRENGGYHAAREQQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQ 116
            E R+ +L+ ++  A+V +    SG  +         + +  D + + I   ++  +D +
Sbjct: 60  EEARIRQLQELLNNAKVGEAPKQSGIALPGSVVKVYYDDDEKDTETFLIGTREQGVSDGK 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146
             + S +SP+  ALI  ++G+  S   P G
Sbjct: 120 LEVYSPNSPLGGALIDAKVGESRSYTVPSG 149


>gi|320094368|ref|ZP_08026155.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319978701|gb|EFW10257.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 159

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 5/156 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D   +T   +D +  EL+ R + +RP I + I  AR  GDL EN  Y AA+  Q++NE
Sbjct: 1   MADTQWLTQAQYDLLANELKERIEVKRPEIARLIDAARQEGDLRENGGYHAARNEQSMNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGL 119
            R+  L+ ++  AEV + +      +  G  V+     +G ++ + +       D+   +
Sbjct: 61  TRIQALQEMLEHAEVGE-TPADDGIVEPGMVVTA--LVAGREQTFLLGSRDAGGDLGIQV 117

Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
            S  +P+  A+IG + GD I   AP G     EIL 
Sbjct: 118 FSTQAPLGAAVIGHKAGDTIEFEAPTGRMIQVEILS 153


>gi|54026800|ref|YP_121042.1| transcription elongation factor GreA [Nocardia farcinica IFM 10152]
 gi|54018308|dbj|BAD59678.1| putative transcription elongation factor [Nocardia farcinica IFM
           10152]
          Length = 164

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 5/150 (3%)

Query: 1   MVDKI--PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +     +T +  D+++ EL       RP I   I+E R  GDL EN  Y AA+E Q  
Sbjct: 1   MTETNVTWLTQESHDRLKSELDALIAN-RPVIAAEINERREEGDLKENGGYHAAREEQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ +L+ ++  A+V    T SG  +         + +  D + + I   +E    S 
Sbjct: 60  QEARIRQLQELLNNAKVGVAPTKSGVALPGSVVKVYYDGDENDTETFLIATREEGLGHSD 119

Query: 119 L--VSISSPIARALIGKELGDIISVNAPGG 146
           L   S +SP+  ALI  ++G+      P G
Sbjct: 120 LETYSPNSPLGGALIDAKVGETREYTLPNG 149


>gi|315650384|ref|ZP_07903455.1| transcription elongation factor GreA [Eubacterium saburreum DSM
           3986]
 gi|315487311|gb|EFU77622.1| transcription elongation factor GreA [Eubacterium saburreum DSM
           3986]
          Length = 168

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/156 (33%), Positives = 83/156 (53%), Gaps = 3/156 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +   +T +   KI+ E+  R+   RP++I+A+ EARA GDLSEN EY AAK  +N NE
Sbjct: 5   MAET--LTKEDIKKIEAEIEERKLVLRPQLIEAVKEARAQGDLSENFEYYAAKREKNKNE 62

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LE ++    V +  T   +    G  V L  ++  + + ++IV     D   G +
Sbjct: 63  SRINYLERMLKFCHVYEDKTNDDEVG-IGKEVELYFEDDDESEKFKIVTSIRGDSLKGRL 121

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           SI SPI +A+IG++ GD + V         +I+ + 
Sbjct: 122 SIESPIGKAIIGRKKGDRVKVAVGNRGYFVKIMSIE 157


>gi|291458829|ref|ZP_06598219.1| transcription elongation factor GreA [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291418083|gb|EFE91802.1| transcription elongation factor GreA [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 167

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/146 (35%), Positives = 86/146 (58%), Gaps = 2/146 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T     +I +E+  R+   RP++I+A+ EAR++GDLSEN EY AAK   N NE R+A L
Sbjct: 5   LTKADVKRIWEEIEKRKLSLRPKLIEAVKEARSHGDLSENFEYYAAKREMNQNESRIAYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E ++  A ++   +   +      TV L+ +  G++++Y+IV        S L+S  SP+
Sbjct: 65  ERMLRFATIVSDRSERDEVG-LNDTVRLLFEEEGEEESYRIVTSIRGHSLSNLISNKSPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEI 152
            +AL+   +GD ++V  PGG K+Y +
Sbjct: 124 GKALLKHRVGDRVTVR-PGGGKSYTV 148


>gi|53802404|ref|YP_112932.1| transcription elongation factor [Methylococcus capsulatus str.
           Bath]
 gi|53756165|gb|AAU90456.1| putative transcription elongation factor [Methylococcus capsulatus
           str. Bath]
          Length = 166

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 16/151 (10%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G  ++Q  +     E +          R  GD     E   AK+     E  + 
Sbjct: 28  NYVTPAGLAQLQARVAELTAERQ----------RLLGD-----ESVGAKQQLRRVERELR 72

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
             +  +  A  +D +  SGDR+ FGATV + ++  G+ + Y IVG+ EAD   G +S  S
Sbjct: 73  YYDERVVSAIPVDPAARSGDRVHFGATVEVEDEA-GNVQRYSIVGEDEADAAHGKISWVS 131

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+ARAL+  E GD ++   P G+K   IL +
Sbjct: 132 PLARALLNAEAGDTVTWKRPAGDKELHILAI 162


>gi|325973303|ref|YP_004250367.1| transcription elongation factor GreA [Mycoplasma suis str.
           Illinois]
 gi|323651905|gb|ADX97987.1| transcription elongation factor GreA [Mycoplasma suis str.
           Illinois]
          Length = 158

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 84/157 (53%), Gaps = 3/157 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +  +T     ++Q++L      ERP++++ + +AR+ GDLSENA+Y +AK+ Q+  E 
Sbjct: 1   MARHYITEAKLKELQKQLDNLVNVERPQVLEELKQARSLGDLSENADYDSAKQRQHEIEK 60

Query: 62  RMAELENIITRAEVID---ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           ++ E+E I+    +ID    S      +  G+ V +    +  +  Y+I+G  +AD  + 
Sbjct: 61  KVQEIEAILKNYSLIDKKGSSERGEKVVEIGSKVKIFHSLTNKEYVYEILGSLDADPANM 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SPIA+ ++GK +G    V         +IL++
Sbjct: 121 KISNESPIAKTIMGKPVGGTYQVEGLKKSYYIKILEI 157


>gi|213965457|ref|ZP_03393652.1| transcription elongation factor GreA [Corynebacterium amycolatum
           SK46]
 gi|213951841|gb|EEB63228.1| transcription elongation factor GreA [Corynebacterium amycolatum
           SK46]
          Length = 170

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 75/152 (49%), Gaps = 4/152 (2%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +DK++ EL     E RP I   I+E R  GDL ENA Y AA+E Q   E R+  
Sbjct: 10  WLTQESYDKLKSELEAL-YENRPVIAAEINERREEGDLKENAGYDAAREQQGQEEARIRY 68

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD--QEADVQSGLVSIS 123
           LE+++ RA V +I   SG  +         + +  D + + I       ++      S  
Sbjct: 69  LEDLLQRATVGEIPQESGVALVGTVVHVYYDGDEDDTETFLIGTRGADSSNPNLETYSTD 128

Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           SP+ +AL+G + G+  +  +P G E +  +++
Sbjct: 129 SPLGKALVGAKEGETRTYTSPSGDEVSVTVIK 160


>gi|171912645|ref|ZP_02928115.1| transcript cleavage factor/unknown domain fusion protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 627

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/146 (28%), Positives = 72/146 (49%), Gaps = 1/146 (0%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +K + EL    + + P+  K I  AR YGDL EN EY++A++ Q +     +  E  + 
Sbjct: 469 MEKRKIELEELVRVKIPQNKKDIQIAREYGDLRENFEYKSARQHQAVLLRMQSTYERELR 528

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
           RA   D   +S + +  G  V L +  +G  +   I+G  + D    ++S  S +A+ALI
Sbjct: 529 RARGTDFVGVSTETVGIGTIVDLQDVGTGKTETQTILGAWDGDPDQSILSYLSEMAKALI 588

Query: 132 GKELGDIISVNAPG-GEKTYEILQVL 156
           GK +GD   +     G +  +I+ + 
Sbjct: 589 GKRVGDEAELPTDTHGTRKVKIVSIR 614


>gi|68536557|ref|YP_251262.1| transcription elongation factor GreA [Corynebacterium jeikeium
           K411]
 gi|68264156|emb|CAI37644.1| greA [Corynebacterium jeikeium K411]
          Length = 173

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 6/159 (3%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +     +T + +D++  EL   + E RP +   I+E R  GDL EN  Y AA+E Q  
Sbjct: 1   MAENQTRWLTQESYDRLNAELTALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD--QEADVQ 116
            E R+  LE ++  A + +    SG  +         + +  DK+ + I     + ++  
Sbjct: 60  EEARITYLEELLDSATIGEAPQESGVALVGSVIHVYYDGDEDDKETFLIGTRGLESSNPD 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
               S  +P+  A++G ++G+      P G   +  I+ 
Sbjct: 120 LETYSTDAPLGAAIVGAKVGETREYQTPAGDTVSVTIVS 158


>gi|300934084|ref|ZP_07149340.1| transcription elongation factor GreA [Corynebacterium resistens DSM
           45100]
          Length = 173

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 6/159 (3%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T + +D++  EL   + E RP +   I+E R  GDL EN  Y AA+E Q  
Sbjct: 1   MADNQTTWLTQESYDRLNAELTALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD--QEADVQ 116
            E R+A LE ++  A + +    SG  +         + +  DK+ + I     + ++  
Sbjct: 60  EEARIAYLEELLDNATIGEAPQESGVALVGSVIHVYYDDDEDDKETFLIGTRGLESSNPD 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
               S  +P+  A++G ++G+      P G      I+ 
Sbjct: 120 LETYSTDAPLGAAIVGAKVGESREYQTPNGDTVKVTIVS 158


>gi|90109221|pdb|2ETN|A Chain A, Crystal Structure Of Thermus Aquaticus Gfh1
 gi|90109222|pdb|2ETN|B Chain B, Crystal Structure Of Thermus Aquaticus Gfh1
 gi|90109223|pdb|2ETN|C Chain C, Crystal Structure Of Thermus Aquaticus Gfh1
 gi|18034643|gb|AAL57610.1|AF456233_1 anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
           aquaticus]
          Length = 157

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 89/157 (56%), Gaps = 5/157 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  ++ +T  G++++ ++L   ++E      K + E     D  +++  +AAK+ +   E
Sbjct: 1   MAREVKLTKAGYERLMKQLEQ-ERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-- 118
            R+  LE++++RA +++  T   + I  G+ V L +  +G++ + Q+V   EA V     
Sbjct: 60  ARIDSLEDVLSRAVILEEGTG--EVIGLGSVVELEDPATGERLSVQVVSPAEASVLENPM 117

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S +SP+ +AL+G  +GD++S++ P G+K + ++ +
Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGKKEFRVVAI 154


>gi|325067374|ref|ZP_08126047.1| transcription elongation factor GreA [Actinomyces oris K20]
 gi|326772303|ref|ZP_08231588.1| transcription elongation factor GreA [Actinomyces viscosus C505]
 gi|326638436|gb|EGE39337.1| transcription elongation factor GreA [Actinomyces viscosus C505]
          Length = 161

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 7/161 (4%)

Query: 1   MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M ++     +T + +D++  EL  R+  ER  I + +  AR  GDL ENA Y AA+E   
Sbjct: 1   MSEQSQGTWLTQEAYDRLAAELEHRKTTERKEIAQRVEAARQEGDLRENAGYHAAREEAG 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
           LNE R+ +LE  +  A++ + +         G  V+                  E     
Sbjct: 61  LNEARIIQLEETLENAQIGEAADDGSVSA--GTIVTAKVAGKEQVFALGGQEITEDVPDG 118

Query: 118 GLV-SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
             V S  +P+ +AL+G   GD +S  AP G K   EI++V 
Sbjct: 119 VKVFSPDAPLGQALMGHRAGDTVSYEAPNGRKIQAEIVKVE 159


>gi|291520255|emb|CBK75476.1| Transcription elongation factor [Butyrivibrio fibrisolvens 16/4]
          Length = 167

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 80/152 (52%), Gaps = 2/152 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T    DKIQ E+  R+   RP++++ + E RA GDLSEN EY  AK  +N+N+ R+ 
Sbjct: 3   ERLTQGDIDKIQAEIDERKLVLRPKLLEEVKETRAQGDLSENFEYHEAKRAKNMNDSRIR 62

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE ++  AEV+D S+   +      TV++       ++ Y++V     +   GL+SI S
Sbjct: 63  YLEKMLKFAEVVDDSSAEDEVG-INNTVTIYIPEDDCEETYKLVTSIRGNSLKGLISIES 121

Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQV 155
           P+  A+ GK +GD   V          EI ++
Sbjct: 122 PLGAAIRGKHVGDKALVKVNDDYSYEVEIRKI 153


>gi|291298253|ref|YP_003509531.1| transcription elongation factor GreA [Stackebrandtia nassauensis
           DSM 44728]
 gi|290567473|gb|ADD40438.1| transcription elongation factor GreA [Stackebrandtia nassauensis
           DSM 44728]
          Length = 167

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 5/154 (3%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ + +D+++ EL       RP +   I+  R  GDL EN  Y AAK+ Q   E R+  
Sbjct: 12  WLSQEAYDRLKAELDE-HIANRPAMAAEINARREEGDLRENGGYHAAKDEQGKIESRIRY 70

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123
           LE+ + +A+V +           G+ V++   +  +     ++G +E    + L   S  
Sbjct: 71  LEDFLRKAQVGEAPVDVKGVT-PGSVVTIAFDDDPEDTETFLLGSREISATTDLTVYSPE 129

Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           S +  A++G   GD ++  AP G E   ++L++ 
Sbjct: 130 SALGAAILGHAEGDTVTYTAPSGAELKVKVLKLE 163


>gi|240147556|ref|ZP_04746157.1| transcription elongation factor GreA [Roseburia intestinalis L1-82]
 gi|257200241|gb|EEU98525.1| transcription elongation factor GreA [Roseburia intestinalis L1-82]
 gi|291538590|emb|CBL11701.1| transcription elongation factor GreA [Roseburia intestinalis XB6B4]
          Length = 167

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 46/151 (30%), Positives = 82/151 (54%), Gaps = 2/151 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +   K+++E+ +R+   R   ++A+ EARA GDLSEN EY AAK+ +N NE R+  L
Sbjct: 5   LTEQDIKKMEEEIEYRKLVVRKEALEAVKEARAQGDLSENFEYHAAKKDKNQNESRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E +I  A+VI   +   +      TV++  +   +++ Y++V     +    L+S  SP+
Sbjct: 65  ERMIKTAKVISTDSAEDEVG-MNNTVTVYFEEDDEEEVYKLVTTVRGNSLKNLISNESPL 123

Query: 127 ARALIGKELGDIISVNA-PGGEKTYEILQVL 156
            +AL+G ++GD + V           I ++ 
Sbjct: 124 GKALLGHKVGDRVEVAVNENYSYYVVIRKIE 154


>gi|313674502|ref|YP_004052498.1| transcription elongation factor greb [Marivirga tractuosa DSM 4126]
 gi|312941200|gb|ADR20390.1| transcription elongation factor GreB [Marivirga tractuosa DSM 4126]
          Length = 145

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 12/145 (8%)

Query: 1   MVDKIP------------VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
           M  KIP            +T++GF K+++E     +  RP +   +S A + GD SENA+
Sbjct: 1   MRRKIPESTLSKLNRSQMITAEGFQKLREEHDHLWKVVRPDVTAKVSWAASLGDRSENAD 60

Query: 49  YQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV 108
           Y   K+     +GR+  L   I   +VI        ++ FGA V +   + G KK  +IV
Sbjct: 61  YHYNKKRLREIDGRIRYLRKCIDNFKVIHYHPHQEGKVMFGAWVEVENIDRGLKKRLRIV 120

Query: 109 GDQEADVQSGLVSISSPIARALIGK 133
           G +E       +S+ SP+A+AL+ K
Sbjct: 121 GYEELIGNKDYISMDSPLAQALLNK 145


>gi|238917160|ref|YP_002930677.1| transcription elongation factor GreA [Eubacterium eligens ATCC
           27750]
 gi|238872520|gb|ACR72230.1| transcription elongation factor GreA [Eubacterium eligens ATCC
           27750]
          Length = 166

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 79/150 (52%), Gaps = 2/150 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T     K+++E+ +R  E R   +  + E RA GDLSEN EY AAK  +N NE R+  L
Sbjct: 5   LTKNDIKKMEEEIEYRIHEVRKAALDDVKETRAQGDLSENFEYHAAKRFKNKNESRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           +  I  A VID S+   +      TV ++ ++    +  +IV    AD  SG++SI SP+
Sbjct: 65  QRTIKNATVIDDSSADDEVG-VNNTVEVLYEDDESTETIKIVTTIRADSLSGMISIESPL 123

Query: 127 ARALIGKELGDIISVNA-PGGEKTYEILQV 155
            +AL+G + GD + V   P  E    I  +
Sbjct: 124 GKALLGHKKGDRVLVQVNPQVEYYVVIKDI 153


>gi|229826123|ref|ZP_04452192.1| hypothetical protein GCWU000182_01488 [Abiotrophia defectiva ATCC
           49176]
 gi|229789696|gb|EEP25810.1| hypothetical protein GCWU000182_01488 [Abiotrophia defectiva ATCC
           49176]
          Length = 167

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 82/151 (54%), Gaps = 2/151 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T     ++++E+  R+   R   I+A+ EARA GDLSEN EY AAK  +N NE R+  L
Sbjct: 5   LTKNDIRRLEEEIEHRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKRHKNQNESRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E +I  A++I+  +   +      TV++   +  +++ +++V     D  + L++I SP+
Sbjct: 65  EKMIKTAKIIEDDSSEDEVG-PDNTVTVYFIDDDEEETFKLVTAVRGDSLNNLITIDSPL 123

Query: 127 ARALIGKELGDIISVNAPGGE-KTYEILQVL 156
            +AL+ K++GD + V           I ++ 
Sbjct: 124 GKALLKKKVGDKVYVKVNERSGYDVIIKKIE 154


>gi|323486296|ref|ZP_08091622.1| transcription elongation factor [Clostridium symbiosum WAL-14163]
 gi|323400406|gb|EGA92778.1| transcription elongation factor [Clostridium symbiosum WAL-14163]
          Length = 178

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +  +T     KI++E+ +R+   R   I+A+ EARA GDLSEN EY AAK+ +N NE
Sbjct: 10  MDMREQLTESDIKKIREEIEYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNRNE 69

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LEN+I  A V+   + S +      TV+L  ++  +++ Y++V     +   GL+
Sbjct: 70  SRIRYLENMIKNARVVSDKSGSDEVG-LNDTVTLYFEDDDEEEVYRLVTSIRGNSLKGLI 128

Query: 121 SISSPIARALIGKELGDIISVNA-PGGEKTYEILQVL 156
           SI SP+ +A+ G + GD + V        +  I ++ 
Sbjct: 129 SIESPLGKAVRGHKEGDSVYVRLGENAGYSVVIKKIE 165


>gi|291087950|ref|ZP_06347975.2| transcription elongation factor GreA [Clostridium sp. M62/1]
 gi|291073509|gb|EFE10873.1| transcription elongation factor GreA [Clostridium sp. M62/1]
 gi|295092686|emb|CBK78793.1| transcription elongation factor GreA [Clostridium cf.
           saccharolyticum K10]
          Length = 172

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 83/154 (53%), Gaps = 2/154 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T     KIQ+E+ +R+   R   I+A+ EARA GDLSEN EY AAK+ +N NE R+
Sbjct: 7   REQLTQSDIRKIQEEIDYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNRNESRI 66

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             LEN+I  A V+   + S +      T++L  ++  ++  Y++V     +     +SI 
Sbjct: 67  RYLENMIKNARVVSDKSRSDEVG-LNDTITLYFEDDDEEDVYRLVTSIRGNSLENKISIE 125

Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
           SP+ +A+ G ++GD + V          E+ ++ 
Sbjct: 126 SPLGKAVRGHKVGDRVYVEVNDRAGYYVEVRKIE 159


>gi|255327346|ref|ZP_05368420.1| transcription elongation factor GreA [Rothia mucilaginosa ATCC
           25296]
 gi|255295626|gb|EET74969.1| transcription elongation factor GreA [Rothia mucilaginosa ATCC
           25296]
          Length = 165

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 11/164 (6%)

Query: 1   MVDKI--PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +     +T   FD++ QEL       R  I+  I++AR  GDL EN  Y AA++ Q  
Sbjct: 1   MAENTGAWLTQDAFDRLTQELEHLSGPYRQEIVDRIAQARDEGDLRENGGYHAARDEQAK 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS- 117
           NE R+ +L++++  A++ +     G        + +  + +G    + +   +  D    
Sbjct: 61  NEARIKQLKHLLETAQIGEAPVDDGVVSHG---MVIEAEVAGRTLKFLLGSREIEDTLPA 117

Query: 118 ----GLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVL 156
                + S  SP+  A++G + GD ++  AP G     +I+ V 
Sbjct: 118 GTDLKVFSEKSPLGAAIMGAKQGDEVTYQAPNGNDLVAKIISVT 161


>gi|239625679|ref|ZP_04668710.1| GreA/GreB family elongation factor [Clostridiales bacterium
           1_7_47_FAA]
 gi|239519909|gb|EEQ59775.1| GreA/GreB family elongation factor [Clostridiales bacterium
           1_7_47FAA]
          Length = 167

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 83/150 (55%), Gaps = 2/150 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T    +K+Q+E+ +R+   R   ++A+ EARA+GDLSEN EY+AAK+ +N NE R+  L
Sbjct: 5   LTKSDIEKMQEEIEYRKLVVRKEALEAVKEARAHGDLSENFEYKAAKQDKNRNESRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E +I  A +I   +   +    G TV +   +  + + Y++V     +   GL+SI SP+
Sbjct: 65  EKMIKTARIISDESKDNEVG-LGDTVEIYIPDDDETERYKLVTTVRGNSLQGLISIDSPL 123

Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQV 155
            +A+   ++GD + VN         EI  +
Sbjct: 124 GKAIRRHKVGDRVHVNVDDRFGYDVEIRSI 153


>gi|194246641|ref|YP_002004280.1| Transcription elongation factor [Candidatus Phytoplasma mali]
 gi|193806998|emb|CAP18433.1| Transcription elongation factor [Candidatus Phytoplasma mali]
          Length = 162

 Score = 97.5 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 6/160 (3%)

Query: 1   MVDK--IP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M DK  I  +T  G  +++++L    +  R   +K + EAR  GDLSENA+Y AA+  Q 
Sbjct: 1   MEDKKNIYELTKSGVLELKEQLHHLTEIRRIENLKILKEAREQGDLSENADYDAARNEQA 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
           L E  + +++NI+   ++  I ++    +  G  V L       KK++ +VG  E D   
Sbjct: 61  LIENEILKIKNILK--KIKIIKSLKNKEVNIGKLVELNFLEKNIKKSFYLVGILETDPSL 118

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
             +SI  P+ + + G ++GD I++ +  G+    EIL+V 
Sbjct: 119 NKISIDCPLGKGIRGHQVGDKITIQSETGKNFQVEILKVE 158


>gi|323693914|ref|ZP_08108101.1| transcription elongation factor [Clostridium symbiosum WAL-14673]
 gi|323502011|gb|EGB17886.1| transcription elongation factor [Clostridium symbiosum WAL-14673]
          Length = 169

 Score = 97.5 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 52/157 (33%), Positives = 86/157 (54%), Gaps = 2/157 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +  +T     KI++E+ +R+   R   I+A+ EARA GDLSEN EY AAK+ +N NE
Sbjct: 1   MDMREQLTESDIKKIREEIEYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNRNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LEN+I  A V+   + S +      TV+L  ++  +++ Y++V     +   GL+
Sbjct: 61  SRIRYLENMIKNARVVSDKSGSDEVG-LNDTVTLYFEDDDEEEVYRLVTSIRGNSLKGLI 119

Query: 121 SISSPIARALIGKELGDIISVNA-PGGEKTYEILQVL 156
           SI SP+ +A+ G + GD + V        +  I ++ 
Sbjct: 120 SIESPLGKAVRGHKEGDSVYVRLGENAGYSVVIKKIE 156


>gi|319441736|ref|ZP_07990892.1| transcription elongation factor GreA [Corynebacterium variabile DSM
           44702]
          Length = 173

 Score = 97.5 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 5/152 (3%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T + +D++  EL   +   RP +   I+E R  GDL EN  Y AA+E Q  
Sbjct: 1   MADNQTTWLTQESYDRLNDELAALKGN-RPALAAEINERREEGDLKENGGYHAAREQQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD--QEADVQ 116
            E R+  LE ++  A + +    SG  +         + +  DK+ + I     + ++  
Sbjct: 60  EEARIVYLEELLDNATIGEAPAESGVALVGSVVHVYYDGDEDDKETFLIGTRGLESSNPD 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEK 148
               S  +P+  AL+G + G+     AP G K
Sbjct: 120 LETYSTDAPLGAALVGAKEGETREYAAPNGSK 151


>gi|319936519|ref|ZP_08010934.1| transcription elongation factor [Coprobacillus sp. 29_1]
 gi|319808411|gb|EFW04966.1| transcription elongation factor [Coprobacillus sp. 29_1]
          Length = 194

 Score = 97.2 bits (240), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 82/150 (54%), Gaps = 1/150 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T K  D ++ E+  R+   R  +++ + EARA+GDLSEN EY AAK+ +N NE R+ 
Sbjct: 30  NQLTQKDIDAMKAEIEHRKVVVRKELLEDVKEARAHGDLSENFEYHAAKKEKNRNESRIR 89

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE +I  AEVI   +   D I     V L  ++  D + Y+IV     +   GLVS  S
Sbjct: 90  YLERMIKTAEVISDESKD-DEIGLNKIVELYFEDEDDVETYKIVTTVRGNSLQGLVSTES 148

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQ 154
           PI +AL+G ++GD + +        Y +++
Sbjct: 149 PIGKALLGHKVGDKVWIPINANAGYYVVVK 178


>gi|254518202|ref|ZP_05130258.1| GreA/GreB family elongation factor [Clostridium sp. 7_2_43FAA]
 gi|226911951|gb|EEH97152.1| GreA/GreB family elongation factor [Clostridium sp. 7_2_43FAA]
          Length = 154

 Score = 97.2 bits (240), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/149 (30%), Positives = 80/149 (53%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +   K+++EL +R   +R  I K  + A A+GD SENAEY+ A      N+ R+  L
Sbjct: 5   LTEENIKKLREELEYRMTVKRAEIAKEKAIAAAHGDRSENAEYKEACANYRENDNRIQYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
            N+I+ A +ID   +    +   +   +       +    +V   ++D ++  +SI S +
Sbjct: 65  LNMISTATIIDDEEIDKSTLGINSKAKIKFIEDDFEDVVTLVTVMDSDPENMCISIESDL 124

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
             AL GK++GDI+ V+AP  + + EIL++
Sbjct: 125 GLALKGKKVGDIVEVDAPEDKYSVEILEI 153


>gi|260906828|ref|ZP_05915150.1| GreA/GreB family elongation factor [Brevibacterium linens BL2]
          Length = 164

 Score = 97.2 bits (240), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 3/155 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           ++  +T + FD++ QEL       R  I + I  AR  GDL EN  Y AA+E Q   E R
Sbjct: 8   EETWLTQEAFDRLSQELEHLSGPGRAEIAEKIEAARDEGDLKENGGYHAAREEQGKQEAR 67

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + +LE ++  A+V   S+ S  +     +V   +    D +      +   D    + S 
Sbjct: 68  IRQLELLLQSAKVG--SSDSDGKTVSPGSVVTAKVAGNDMRFLLGSREIAGDSDIDVFSE 125

Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
            SP+  A++G  +G   S  AP G E   E+  + 
Sbjct: 126 KSPLGAAVLGVAVGGKTSYEAPNGKEIKVEVKGIE 160


>gi|256374856|ref|YP_003098516.1| transcription elongation factor GreA [Actinosynnema mirum DSM
           43827]
 gi|255919159|gb|ACU34670.1| transcription elongation factor GreA [Actinosynnema mirum DSM
           43827]
          Length = 162

 Score = 97.2 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 3/158 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            +   +T + +D+++ EL     E RP I   I+  R  GDL EN  Y AA+E Q   E 
Sbjct: 4   TEVTWLTQEAYDRLKAELDEMI-ENRPVIAAEINARREEGDLRENGGYHAAREEQGKQEA 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ +L+ ++  A+V +  T++G            E +   ++      ++ A   + + S
Sbjct: 63  RIRQLQELLRVAKVGEAPTVTGIAAPGMVLTVRYEGDDETEEFLLATREEGAHGGTEVYS 122

Query: 122 ISSPIARALIGKELGDIISVNAPGG-EKTYE-ILQVLW 157
            SSP+ +AL+G + G+      P G       I  V +
Sbjct: 123 PSSPLGKALLGAKEGETREYELPNGSTMKVTLIKAVPY 160


>gi|266619156|ref|ZP_06112091.1| transcription elongation factor GreA [Clostridium hathewayi DSM
           13479]
 gi|288869302|gb|EFD01601.1| transcription elongation factor GreA [Clostridium hathewayi DSM
           13479]
          Length = 186

 Score = 97.2 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 85/154 (55%), Gaps = 3/154 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M DK  +T     K+Q+E+ +R+   R   ++A+ EARA+GDLSEN EY AAK+ +N NE
Sbjct: 20  MYDK--LTKNDIQKMQEEIDYRKLVVRREALEAVKEARAHGDLSENFEYHAAKKDKNQNE 77

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LE +I  A+++   +   D I    TV L  ++  + + Y++V     +   GL+
Sbjct: 78  SRIRYLERMIKTAQIVSDESRE-DEIGLYNTVDLYFEDDDEVETYKLVTTVRGNSMKGLI 136

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           S  SP+  A++G  +GD + V        Y +++
Sbjct: 137 SSESPLGSAIMGHRVGDRVYVRINEKAGYYVVVK 170


>gi|315037460|ref|YP_004031028.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
           1112]
 gi|312275593|gb|ADQ58233.1| transcription elongation factor GreA [Lactobacillus amylovorus GRL
           1112]
          Length = 143

 Score = 97.2 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 13/150 (8%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +G+ +I+ E+   ++  RPR IK +  A A GDLSEN EY  AK             
Sbjct: 7   MTPEGYKQIEDEIARLKK-GRPRRIKILQAACALGDLSENTEYTEAKRYLGKQLKYT--- 62

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
                      + T    ++  G TV L   +  D + Y+IVG  EAD+  G +S  SP+
Sbjct: 63  ---------EIVETKDDGKVDLGKTVVLKFDDDEDTEEYKIVGRMEADLADGKISFGSPL 113

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A++ KE G   +V AP GE    I++V 
Sbjct: 114 GQAIMKKEAGTTSTVGAPAGEYKVTIVEVK 143


>gi|262201591|ref|YP_003272799.1| transcription elongation factor GreA [Gordonia bronchialis DSM
           43247]
 gi|262084938|gb|ACY20906.1| transcription elongation factor GreA [Gordonia bronchialis DSM
           43247]
          Length = 164

 Score = 97.2 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 5/150 (3%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T +  D+++ EL       RP I   I+E R  GDL EN  Y AA+E Q  
Sbjct: 1   MTDTQVTWLTQESHDRLKGELDSLIAN-RPVIAAEINERREEGDLKENGGYHAAREEQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQ 116
            E R+ +L+ ++  A+V +  T SG  +         + +  D + + I   +E      
Sbjct: 60  QEARIRQLQELLNNAKVGEAPTQSGVALPGSVVTVYYDGDEKDTETFLIATREEGAQGGD 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146
               S SSP+  ALI  ++G+    + P G
Sbjct: 120 LETYSPSSPLGSALIDAKVGETREYSVPSG 149


>gi|300087971|ref|YP_003758493.1| GreA/GreB family elongation factor [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527704|gb|ADJ26172.1| GreA/GreB family elongation factor [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 271

 Score = 97.2 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 83/151 (54%), Gaps = 2/151 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +    ++ ++   +  +R  +++ I +A A  DL ENA Y AA+E +   +G++AEL
Sbjct: 122 ITLEQKKDMEVDVARLKD-KRVEVVEEIKKAAADKDLKENAPYHAAREEKAKLDGKIAEL 180

Query: 67  ENIITRAEVIDISTMS-GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           E ++ +A V +    S   ++  G  V++    SG    +++V  +E D ++G +S +SP
Sbjct: 181 EMMLKQAVVQEKHMTSGKKKVEVGRQVTVTNLASGQVTKFKLVIAREVDPKNGCISPASP 240

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           I +A++G+ +GD + V AP     Y I  + 
Sbjct: 241 IGKAIMGRYIGDTVEVVAPACTNRYCINSIE 271


>gi|699276|gb|AAA63039.1| greA [Mycobacterium leprae]
          Length = 202

 Score = 96.8 bits (239), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 5/150 (3%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T +  D+++ EL       RP I   I++ R  GDL EN  Y AA+E Q  
Sbjct: 39  MTDTQVTWLTQESHDRLKAELDQLIAN-RPVIAAEINDRREEGDLRENGGYHAAREEQGQ 97

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQ 116
            E R+ +L++++  A+V +    SG  +           +  D + + I   QE   + +
Sbjct: 98  QEARIRQLQDLLNIAKVGEAPKQSGVALPGSVVKVYYNDDKSDTETFLIATRQEGVNEGK 157

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG 146
             + S +SP+  ALI  ++G+  S   P G
Sbjct: 158 LEVYSPNSPLGGALIDAKVGETRSYTVPNG 187


>gi|218296574|ref|ZP_03497302.1| GreA/GreB family elongation factor [Thermus aquaticus Y51MC23]
 gi|218243116|gb|EED09648.1| GreA/GreB family elongation factor [Thermus aquaticus Y51MC23]
          Length = 156

 Score = 96.8 bits (239), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 89/157 (56%), Gaps = 5/157 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  ++ +T  G++++ ++L   ++E      K + E     D  +++  +AAK+ +   E
Sbjct: 1   MAREVKLTKAGYERLMKQLEQ-ERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--G 118
            R+  LE++++RA +++  T   + I  G+ V L +  +G++ + Q+V   EA V     
Sbjct: 60  ARIDSLEDVLSRAVILEEGTG--EVIGLGSVVELEDPATGERLSVQVVSPAEASVLETPM 117

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S +SP+ +AL+G  +GD++S++ P G+K + ++ V
Sbjct: 118 KISDASPMGKALLGHRVGDVLSLDTPKGKKEFRVVAV 154


>gi|210611522|ref|ZP_03288942.1| hypothetical protein CLONEX_01132 [Clostridium nexile DSM 1787]
 gi|210151969|gb|EEA82976.1| hypothetical protein CLONEX_01132 [Clostridium nexile DSM 1787]
          Length = 194

 Score = 96.8 bits (239), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 83/150 (55%), Gaps = 1/150 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T K  D ++ E+ +R+   R  +++ + EARA+GDLSEN EY AAK+ +N NE R+ 
Sbjct: 30  NQLTQKDIDAMKAEIEYRKVVVRKELLEDVKEARAHGDLSENFEYHAAKKEKNRNESRIR 89

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE +I  AEVI   +   D I     V L  ++  D + Y+IV     +   GLVS  S
Sbjct: 90  YLERMIKTAEVISDESKD-DEIGLNKIVELYFEDEDDVETYKIVTTVRGNSLQGLVSTES 148

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQ 154
           PI +AL+G ++GD + +        Y +++
Sbjct: 149 PIGKALLGHKVGDKVWIPINANAGYYVVVK 178


>gi|291520769|emb|CBK79062.1| transcription elongation factor GreA [Coprococcus catus GD/7]
          Length = 167

 Score = 96.8 bits (239), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 82/150 (54%), Gaps = 2/150 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           ++     K+++E+  R+   R   + A+ EAR  GDLSEN EYQAAK  +N NE R+  L
Sbjct: 5   LSEADIQKMKEEIEHRKVVVRKEALAAVKEAREQGDLSENFEYQAAKREKNRNESRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E ++  A+VI   +   +      TV++  ++  +++ Y+IV     DV  GL+SI SP+
Sbjct: 65  ERMVKTAKVIKDHSKDDEVG-LNNTVTVYFEDEDEEETYRIVTTVREDVLHGLISIDSPV 123

Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQV 155
            +AL+G  +GD + V          EI ++
Sbjct: 124 GKALLGHRVGDTVHVQVNDKYGYDVEIRKI 153


>gi|291536540|emb|CBL09652.1| transcription elongation factor GreA [Roseburia intestinalis M50/1]
          Length = 167

 Score = 96.8 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 2/151 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +   K+++E+ +R+   R   ++A+ EARA GDLSEN EY AAK+ +N NE R+  L
Sbjct: 5   LTEQDIKKMEEEIEYRKLVVRKEALEAVKEARAQGDLSENFEYHAAKKDKNQNESRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E +I  A+VI   +   +      TV++  +   +++ Y+IV     +    L+S  SP+
Sbjct: 65  ERMIKTAKVISTDSAEDEVG-MNNTVTVYFEEDDEEEVYKIVTTVRGNSLKNLISNESPL 123

Query: 127 ARALIGKELGDIISVNA-PGGEKTYEILQVL 156
            +AL+G ++GD + V           I ++ 
Sbjct: 124 GKALLGHKVGDRVEVAVNENYSYYVVIRKIE 154


>gi|260577699|ref|ZP_05845634.1| transcription elongation factor GreA [Corynebacterium jeikeium ATCC
           43734]
 gi|258604094|gb|EEW17336.1| transcription elongation factor GreA [Corynebacterium jeikeium ATCC
           43734]
          Length = 173

 Score = 96.8 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 6/159 (3%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +     +T + +D++  EL   + E RP +   I+E R  GDL EN  Y AA+E Q  
Sbjct: 1   MAENQTRWLTQESYDRLNTELTALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD--QEADVQ 116
            E R+  LE ++  A + +    SG  +         + +  DK+ + I     + ++  
Sbjct: 60  EEARITYLEELLDSATIGEAPQESGVALVGSVIHVYYDGDEDDKETFLIGTRGLESSNPD 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
               S  +P+  A++G ++G+      P G   +  I+ 
Sbjct: 120 LETYSTDAPLGAAIVGAKVGETREYQTPAGDTVSVTIVS 158


>gi|153814499|ref|ZP_01967167.1| hypothetical protein RUMTOR_00713 [Ruminococcus torques ATCC 27756]
 gi|317500540|ref|ZP_07958762.1| transcription elongation factor [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145847993|gb|EDK24911.1| hypothetical protein RUMTOR_00713 [Ruminococcus torques ATCC 27756]
 gi|316898050|gb|EFV20099.1| transcription elongation factor [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 167

 Score = 96.8 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 89/154 (57%), Gaps = 3/154 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +K  +T    +KI++E+  R+  ER  +I+A+ EAR++GDLSEN EY AAK+ +N NE
Sbjct: 1   MREK--LTKSDVEKIREEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKEKNRNE 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LE ++  A +++  +   D I    TV +  ++  + + Y+IV        +GLV
Sbjct: 59  SRIRYLERMLKTAVIVEDESKE-DEIGLNNTVEVYCEDDEEVETYRIVTSVRGSSLNGLV 117

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           SI SP+ +AL+G + GD + +        Y I++
Sbjct: 118 SIESPLGKALLGHKEGDRVFIKVNDDFGYYVIVK 151


>gi|254498603|ref|ZP_05111322.1| transcription elongation factor GreA [Legionella drancourtii
           LLAP12]
 gi|254352143|gb|EET10959.1| transcription elongation factor GreA [Legionella drancourtii
           LLAP12]
          Length = 139

 Score = 96.8 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 50/116 (43%), Positives = 84/116 (72%), Gaps = 1/116 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K P+T +G + +++EL+  +  +RPRI+++I+ ARA+GDL ENAEY AA+E Q+ NEG
Sbjct: 22  MNKHPMTIQGAEALKEELQRLKFVDRPRIVESIATARAHGDLKENAEYHAAREQQSFNEG 81

Query: 62  RMAELENIITRAEVIDIST-MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
           R+ ELE  ++ A++IDIS   +  ++ FG+TV++    +  +  YQIVG+ EAD++
Sbjct: 82  RIQELEAKLSNAQIIDISKLPNNGKVVFGSTVTVCHVATDAQLTYQIVGEDEADIK 137


>gi|325265032|ref|ZP_08131759.1| transcription elongation factor GreA [Clostridium sp. D5]
 gi|324029722|gb|EGB91010.1| transcription elongation factor GreA [Clostridium sp. D5]
          Length = 167

 Score = 96.8 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 50/143 (34%), Positives = 83/143 (58%), Gaps = 3/143 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M DK  +T    +KI++E+  R+   R   I+A+ EARA+GDLSEN EY AAK+ +N NE
Sbjct: 1   MYDK--LTKSDIEKIREEIEHRKLVVRREAIEAVKEARAHGDLSENFEYHAAKKDKNKNE 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LE ++  A ++D ++   +      TV L  +   + + Y++V        +GL+
Sbjct: 59  SRIRYLERMLKTAVIVDDTSQEDEVG-INNTVELYFEEDDEVETYRLVTSVRGSSINGLI 117

Query: 121 SISSPIARALIGKELGDIISVNA 143
           SI SPI +A++G+++ D + V  
Sbjct: 118 SIESPIGKAILGRKVNDRVFVKV 140


>gi|256833112|ref|YP_003161839.1| transcription elongation factor GreA [Jonesia denitrificans DSM
           20603]
 gi|256686643|gb|ACV09536.1| transcription elongation factor GreA [Jonesia denitrificans DSM
           20603]
          Length = 160

 Score = 96.4 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 8/156 (5%)

Query: 1   MVDKI--PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +     +T + +D+++ EL       R  I   I++AR  GDL EN  Y AA+E Q  
Sbjct: 1   MTEANVTWLTQEAYDRLRAELDHLSGPARQEITNRIAQARDEGDLKENGGYHAAREEQGK 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS- 117
           NE R+ ELE  +    +          +  G  V      +GD+  + +   + AD    
Sbjct: 61  NEARIHELEEKLRNIRIGTPPDD--GVVEPGMIVVA--DVAGDEMTFLLGSREIADTTDL 116

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
            + S  SP+  A+ G+++G+  +  AP G +  E++
Sbjct: 117 DVYSEQSPLGSAINGRKVGESTAYTAPNG-RDIEVV 151


>gi|197303207|ref|ZP_03168249.1| hypothetical protein RUMLAC_01930 [Ruminococcus lactaris ATCC
           29176]
 gi|197297747|gb|EDY32305.1| hypothetical protein RUMLAC_01930 [Ruminococcus lactaris ATCC
           29176]
          Length = 167

 Score = 96.4 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 1/150 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T    +KI+ E+  R+  ER  +I+A+ EAR++GDLSEN EY AAK+ +N NE R+
Sbjct: 2   RERLTKSDVEKIKAEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKAKNQNESRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             LE ++  AE+++      D I    TV L  ++  + + Y+IV        +GLVSI 
Sbjct: 62  RYLERMLKTAEIVE-DHSKADEIGLNNTVELYCEDDDEVETYRIVTSVRGSSLNGLVSIE 120

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153
           SPI +AL+G + GD + +        Y ++
Sbjct: 121 SPIGKALLGHKEGDRVYIKVNDDFGYYVVI 150


>gi|183601464|ref|ZP_02962834.1| transcription elongation factor GreA [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219683518|ref|YP_002469901.1| transcription elongation factor GreA [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|241191036|ref|YP_002968430.1| transcription elongation factor GreA [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196442|ref|YP_002969997.1| transcription elongation factor GreA [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|183219070|gb|EDT89711.1| transcription elongation factor GreA [Bifidobacterium animalis
           subsp. lactis HN019]
 gi|219621168|gb|ACL29325.1| transcription elongation factor GreA [Bifidobacterium animalis
           subsp. lactis AD011]
 gi|240249428|gb|ACS46368.1| transcription elongation factor GreA [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240250996|gb|ACS47935.1| transcription elongation factor GreA [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|295794025|gb|ADG33560.1| transcription elongation factor GreA [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 160

 Score = 96.4 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/152 (33%), Positives = 82/152 (53%), Gaps = 6/152 (3%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           + +T + +DK+++EL  R+ E R  I + I+ ARA GDLSEN  YQAA+E Q+ NEGR+ 
Sbjct: 8   VLLTQEAYDKMKEELAHREGEYRDEITERIAAARAEGDLSENGGYQAAREEQSKNEGRIN 67

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQSGLVSIS 123
           EL   +  A++I+           G    +  +  G++  Y I            ++S  
Sbjct: 68  ELIVKLRNAKIIEAP----KAGEVGNGSLVTIELGGNEMQYVIGSRDITVATDYDVISPE 123

Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           SPI  A+IG ++GD+++  AP G E +  I +
Sbjct: 124 SPIGGAIIGHKVGDVVTYKAPNGREISVTIKE 155


>gi|298345920|ref|YP_003718607.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063]
 gi|304390376|ref|ZP_07372329.1| transcription elongation factor GreA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315654508|ref|ZP_07907414.1| transcription elongation factor GreA [Mobiluncus curtisii ATCC
           51333]
 gi|315657583|ref|ZP_07910465.1| transcription elongation factor GreA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|298235981|gb|ADI67113.1| transcription elongation factor [Mobiluncus curtisii ATCC 43063]
 gi|304326132|gb|EFL93377.1| transcription elongation factor GreA [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|315490972|gb|EFU80591.1| transcription elongation factor GreA [Mobiluncus curtisii ATCC
           51333]
 gi|315492055|gb|EFU81664.1| transcription elongation factor GreA [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 161

 Score = 96.4 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 51/159 (32%), Positives = 72/159 (45%), Gaps = 9/159 (5%)

Query: 1   MVD---KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M +   K  +T   FD++Q EL  R    R  I K I  AR  GDL EN  Y AA++ Q+
Sbjct: 1   MAEEAKKNWMTQASFDRLQAELDERTGPIRSEITKKIDAARREGDLKENGGYHAARDEQS 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
            NE R+ EL+ I+  AEV + +T        G    +  K    K  + +     A    
Sbjct: 61  QNETRILELQEILKYAEVGEAATD----GTIGPGSVVEAKVGPKKMTFLLGSRDAAKGMD 116

Query: 118 -GLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQ 154
             + S  +P+  AL G   GD +   AP G+K   E+L 
Sbjct: 117 IQVFSPDAPLGVALAGHRTGDTVEYVAPTGKKIKVEVLD 155


>gi|291561619|emb|CBL40418.1| Transcription elongation factor [butyrate-producing bacterium
           SS3/4]
          Length = 167

 Score = 96.4 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/137 (35%), Positives = 78/137 (56%), Gaps = 1/137 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T     K+++E+ +R+   R   I+A+ EARA GDLSEN EY AAK+ +N NE R+  L
Sbjct: 5   LTKNDIKKMEEEIEYRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNKNESRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E +I  A+V+   +   +      TV +  ++  + + Y+IV     +   GL+S  SP+
Sbjct: 65  ERMIRTAKVVSDESKDDEVG-LYNTVDVYFEDDDETETYKIVTTIRGNSLKGLISSESPL 123

Query: 127 ARALIGKELGDIISVNA 143
            RAL+G ++GD + V  
Sbjct: 124 GRALLGHKVGDRVHVQV 140


>gi|269794151|ref|YP_003313606.1| transcription elongation factor [Sanguibacter keddieii DSM 10542]
 gi|269096336|gb|ACZ20772.1| transcription elongation factor [Sanguibacter keddieii DSM 10542]
          Length = 160

 Score = 96.4 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 7/150 (4%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +     +T +  D++Q EL     E R  I   I+ AR  GDL EN  Y AA+E Q  
Sbjct: 1   MAENDVTWLTQEAHDRLQAELAHLTGEGRTDITDRIAAARDEGDLKENGGYHAAREEQAK 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS- 117
           NE R+ EL   +    +          +  G  V+   + +GD+  + +   + AD    
Sbjct: 61  NEARIRELTEKLRSVRIGTPPDD--GVVEQGMVVTA--EVAGDEMVFLLGSREIADTTDI 116

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE 147
            + S  SP+  A++GK++G+  +  AP G+
Sbjct: 117 DVYSEKSPLGAAILGKKIGETAAYTAPNGK 146


>gi|46445720|ref|YP_007085.1| fused transcript cleavage factor/uncharacterized domain-containing
           protein [Candidatus Protochlamydia amoebophila UWE25]
 gi|46399361|emb|CAF22810.1| conserved hypothetical protein [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 723

 Score = 96.0 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/152 (29%), Positives = 82/152 (53%), Gaps = 5/152 (3%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           ++I  T +G+ KIQ  +R     E     + I  ARA GDL EN+E++ A+E +   +  
Sbjct: 570 EEIWTTEEGYLKIQDRIRQIGTVEVVENAREIEAARALGDLRENSEFKFAQERRARLQSE 629

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  L     RA +I    +  D +  G+ + L++ + G K  Y I+G  +AD +  ++S+
Sbjct: 630 LKTLSEQFGRARIITPDDILTDEVGIGSVIDLID-SQGQKIRYSILGPWDADPEKNILSL 688

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           +S  A+A+IGK++GD         ++T+++L 
Sbjct: 689 NSKFAQAMIGKKIGDQFQFK----DETFKVLS 716


>gi|325989739|ref|YP_004249438.1| transcription elongation factor GreA [Mycoplasma suis KI3806]
 gi|323574824|emb|CBZ40484.1| Transcription elongation factor GreA [Mycoplasma suis]
          Length = 161

 Score = 96.0 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 83/155 (53%), Gaps = 3/155 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T     ++Q++L      ERP++++ + +AR+ GDLSENA+Y +AK+ Q+  E ++
Sbjct: 6   RHYITEAKLKELQKQLDNLVNVERPQVLEELKQARSLGDLSENADYDSAKQRQHEIEKKV 65

Query: 64  AELENIITRAEVID---ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            E+E I+    +ID    S      +  G+ V +    +  +  Y+I+G  +AD  +  +
Sbjct: 66  QEIEAILKNYSLIDKKGSSERGEKVVEIGSKVKIFHSLTNKEYVYEILGSLDADPANMKI 125

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  SPIA+ ++GK +G    V         +IL++
Sbjct: 126 SNESPIAKTIMGKPVGGTYQVEGLKKSYYIKILEI 160


>gi|313906219|ref|ZP_07839565.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6]
 gi|313468949|gb|EFR64305.1| GreA/GreB family elongation factor [Eubacterium cellulosolvens 6]
          Length = 167

 Score = 96.0 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 80/152 (52%), Gaps = 2/152 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T     K+Q+E+  R   ERP+I+KA+ EARA GDLSEN EY AA++    N  R+  
Sbjct: 4   RLTRSDIRKMQEEIDHRTLVERPKILKAVQEARAQGDLSENFEYYAARKANRENNSRINY 63

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  +I  A +++  +           V++   +  + + Y+IV    AD   G ++ +SP
Sbjct: 64  LTKMIETAIIVEDRSAEDQVG-LNKKVTVKFPDEEETETYKIVTSVRADSMEGRITPNSP 122

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           + RAL+GK  GD+  V      E   EI+QV 
Sbjct: 123 LGRALMGKRAGDLAHVKVNDKLEYDVEIVQVE 154


>gi|297620326|ref|YP_003708463.1| transcription elongation factor greA [Waddlia chondrophila WSU
           86-1044]
 gi|297375627|gb|ADI37457.1| transcription elongation factor greA [Waddlia chondrophila WSU
           86-1044]
          Length = 721

 Score = 96.0 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 5/149 (3%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           T +G+ K Q+ ++     E     K + EAR++GDL EN+EY+ A E ++  +  M  L 
Sbjct: 573 TEEGYRKTQERVKRIATVEMVENAKEVEEARSHGDLRENSEYKFACEKRSRLQSEMKMLS 632

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             ++ A V+    +       G  V + E +   ++ + I+G  EAD+ +G++S  S IA
Sbjct: 633 KQLSAARVLTPEDVDSSIAGVGCIVEVEEPSGAKEQ-FTILGPWEADIDNGIISYQSQIA 691

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156
           +A+ G ++GD  +      +  Y+I  + 
Sbjct: 692 QAMSGHKIGDSFTFK----DGHYKITALK 716


>gi|302387987|ref|YP_003823809.1| GreA/GreB family elongation factor [Clostridium saccharolyticum
           WM1]
 gi|302198615|gb|ADL06186.1| GreA/GreB family elongation factor [Clostridium saccharolyticum
           WM1]
          Length = 167

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 86/154 (55%), Gaps = 3/154 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M DK  +T     K+Q+E+ +R+   R   ++A+ EARA+GDLSEN EY AAK+ +N NE
Sbjct: 1   MFDK--LTENDIKKMQEEIDYRKLVVRKEALEAVKEARAHGDLSENFEYHAAKKDKNQNE 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LE +I  A++I       D I    TV L  ++  +++ Y++V     +   GL+
Sbjct: 59  SRIRYLEKMIKTAQIIS-DESKDDEIGLYNTVDLYFEDEDEEETYKLVTTVRGNSMKGLI 117

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           +  SP+ +A++G  +GD + V        Y +++
Sbjct: 118 TSESPLGKAIMGHRVGDRVYVRVNEKTGYYVVVK 151


>gi|320532416|ref|ZP_08033252.1| putative transcription elongation factor GreA [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320135363|gb|EFW27475.1| putative transcription elongation factor GreA [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 161

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 7/161 (4%)

Query: 1   MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M ++     +T + +D++  EL  R+  ER  I + +  AR  GDL ENA Y AA+E   
Sbjct: 1   MSEQSQGTWLTQEAYDRLSTELEHRKTAERKEIAQRVEAARQEGDLRENAGYHAAREEAG 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
           LNE R+ +LE  +  A++ + +         G  V+                  E     
Sbjct: 61  LNEARIIQLEETLENAQIGEAADDGSVSA--GTIVTAKVAGKEQVFALGGQEITEDVPDG 118

Query: 118 GLV-SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
             V S  +P+ +AL+G   GD +S  AP G K   EI++V 
Sbjct: 119 VKVFSPDAPLGQALMGHRAGDTVSYEAPTGRKIKAEIVKVE 159


>gi|154495827|ref|ZP_02034523.1| hypothetical protein BACCAP_00107 [Bacteroides capillosus ATCC
           29799]
 gi|150275025|gb|EDN02073.1| hypothetical protein BACCAP_00107 [Bacteroides capillosus ATCC
           29799]
          Length = 197

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/148 (33%), Positives = 81/148 (54%), Gaps = 1/148 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T K    +++EL +R+   RP++++A+ EAR +GDLSEN EY+AAK+ +N NE R+  L
Sbjct: 35  LTRKDLQMMREELDYRRITLRPQLLEAVKEARGFGDLSENFEYKAAKQEKNRNESRIRFL 94

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           EN+I  A VI               V++  +   + + YQ+V     D   G +S  SP+
Sbjct: 95  ENMIRTAVVISDQAAPDTVG-LYDKVTVYLEEDDETETYQVVTTMRQDALHGRISKESPV 153

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
             AL+GK +GD I +        Y +++
Sbjct: 154 GSALLGKRVGDRIYIQVNDNYGYYVVIK 181


>gi|283458641|ref|YP_003363276.1| transcription elongation factor [Rothia mucilaginosa DY-18]
 gi|283134691|dbj|BAI65456.1| transcription elongation factor [Rothia mucilaginosa DY-18]
          Length = 189

 Score = 96.0 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 7/160 (4%)

Query: 1   MVDKI--PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +     +T   FD++ QEL +     R  I+  I++AR  GDL EN  Y AA++ Q  
Sbjct: 25  MAENTGAWLTQDAFDRLTQELEYLSGPYRQEIVDRIAQARDEGDLRENGGYHAARDEQAK 84

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE---ADV 115
           NE R+ +L++++  A + D     G     G  +         K        ++   A  
Sbjct: 85  NEARIKQLKHLLETAHIGDTPADDGVVEH-GMVIEAEVAGRTLKFLLGSREIEDTLPAGS 143

Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
              + S  SP+  A++G + GD ++  AP G E + +I+ 
Sbjct: 144 DLKVFSEKSPLGAAIMGAKQGDEVTYTAPNGKELSAKIIS 183


>gi|225573152|ref|ZP_03781907.1| hypothetical protein RUMHYD_01343 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039481|gb|EEG49727.1| hypothetical protein RUMHYD_01343 [Blautia hydrogenotrophica DSM
           10507]
          Length = 167

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 85/151 (56%), Gaps = 1/151 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T    +KI++E+ +R+   R   ++A+ EARA+GDLSEN EY AAK+ +N NE R+
Sbjct: 2   RNQLTKNDVEKIKEEIEYRKLVVRKEALEAVKEARAHGDLSENFEYHAAKKDKNRNESRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             LE ++  +E++   +   +   F  TV L  +   + + +++V     +   GL+S  
Sbjct: 62  RYLERMLKTSEIVSDESKDDEVGLFN-TVELYFEEDDETEKFKVVTSVRGNSLKGLISTE 120

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           SP+ +A++GK+ GD + +        Y +++
Sbjct: 121 SPLGKAIMGKKTGDRVEIKVSDSYSYYVVIK 151


>gi|25027606|ref|NP_737660.1| transcription elongation factor GreA [Corynebacterium efficiens
           YS-314]
 gi|23492888|dbj|BAC17860.1| putative transcription elongation factor GreA [Corynebacterium
           efficiens YS-314]
          Length = 217

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 4/156 (2%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            DK  +T +   K+++EL       RP +   I+E R  GDL ENA Y AA+E+Q+  E 
Sbjct: 47  ADKQYITPEMKAKLEEELNTLIA-RRPIVAAEINERREEGDLKENAGYDAAREMQDQEEA 105

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119
           R+ ++  ++  A       + G            + +  DK+ + I     A  +     
Sbjct: 106 RIKQISEVLANATTEREGIVEGVANVGSVVHVYYDGDESDKETFLIGTRAAATDNPDLET 165

Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
            S  SP+  A++G   G+      P G   +  I+ 
Sbjct: 166 YSEQSPLGAAILGAHEGETREYTTPNGSAVSVTIVS 201


>gi|184201417|ref|YP_001855624.1| transcription elongation factor GreA [Kocuria rhizophila DC2201]
 gi|183581647|dbj|BAG30118.1| transcription elongation factor GreA [Kocuria rhizophila DC2201]
          Length = 165

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 82/155 (52%), Gaps = 9/155 (5%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + +D++++EL +     R  I+  I +AR+ GDL EN  Y AA+E Q  NEGR+ +
Sbjct: 8   WLTQEAYDRLKKELDYIAGPYRQEIVDRIEQARSEGDLKENGGYHAAREEQGKNEGRIVQ 67

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-----LV 120
           L  ++  A+V +            A + +  + +GD+  + +   + A+  +G     + 
Sbjct: 68  LTQLLENAQVGEAPADD---GVIEAGMVVTAEIAGDEMTFLMGSREVAEDLTGGEDLEVF 124

Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
           S  SP+  A+ G ++G+ +S  AP G+  T +IL+
Sbjct: 125 SERSPMGAAINGHKVGETVSYQAPNGKDITVKILK 159


>gi|172040278|ref|YP_001799992.1| transcription elongation factor GreA [Corynebacterium urealyticum
           DSM 7109]
 gi|171851582|emb|CAQ04558.1| unnamed protein product [Corynebacterium urealyticum DSM 7109]
          Length = 174

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 6/160 (3%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T + +D++  EL   + E RP +   I+E R  GDL EN  Y AA+E Q  
Sbjct: 1   MADNQTTWLTQESYDRLNAELFALK-ENRPVLAAEINERREEGDLKENGGYHAAREQQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD--QEADVQ 116
            E R+A LE ++  A + +    SG  +         + +  DK+ + I     + ++ +
Sbjct: 60  EEARIAYLEELLDNATIGEAPQESGVALVGTVVHVYYDDDEEDKETFLIGTRGLESSNPE 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
               S  +P+  AL+G ++G+      P G+ T  +  V 
Sbjct: 120 LETYSTDAPLGAALVGAKVGETREYETPTGD-TVRVTLVE 158


>gi|320450007|ref|YP_004202103.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
           scotoductus SA-01]
 gi|320150176|gb|ADW21554.1| anti-cleavage anti-GreA transcription factor Gfh1 [Thermus
           scotoductus SA-01]
          Length = 156

 Score = 95.2 bits (235), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 88/158 (55%), Gaps = 5/158 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  ++ +T  G++++ Q+L   ++E      + + E     D  +++  +AAK+ +   E
Sbjct: 1   MAREVKLTKAGYERLMQQLLQ-ERERLQEATRILQELMESSDDYDDSGLEAAKQEKARIE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS--G 118
            R+  LE+I++RA +I+ +T   + I  G+ V L +  +G++   Q+V   EA V     
Sbjct: 60  ARIDSLEDILSRAVIIEGATT--EVIGLGSVVELEDPVTGERLEVQVVSPAEASVLETPM 117

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S +SP+ +AL+G   GD++S++ P G+K + ++ V 
Sbjct: 118 KISDASPMGKALLGHREGDVLSLDTPKGKKEFRVVSVR 155


>gi|225028128|ref|ZP_03717320.1| hypothetical protein EUBHAL_02398 [Eubacterium hallii DSM 3353]
 gi|224954598|gb|EEG35807.1| hypothetical protein EUBHAL_02398 [Eubacterium hallii DSM 3353]
          Length = 165

 Score = 95.2 bits (235), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 81/154 (52%), Gaps = 2/154 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T +  DK++ E+  R+ E RP +++ + EARA+GDLSEN EY AAK+ +N NE R+
Sbjct: 2   KHKLTQQDVDKMKAEIEHRKVEVRPELLEHVKEARAHGDLSENFEYHAAKKEKNRNESRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             LE +I   E+++  + +        TV+L  +   +   +  V     D     VSI 
Sbjct: 62  RYLERMIRTCEIVEDHSNADQVG-LNKTVTLYFEEDDETDKFSFVTTVLVDTMQNRVSIE 120

Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           SP+ +AL+G + G+ + +          EI ++ 
Sbjct: 121 SPLGKALLGHKKGERVYIPVNAQYGYYVEIKEIE 154


>gi|166032355|ref|ZP_02235184.1| hypothetical protein DORFOR_02058 [Dorea formicigenerans ATCC
           27755]
 gi|166028078|gb|EDR46835.1| hypothetical protein DORFOR_02058 [Dorea formicigenerans ATCC
           27755]
          Length = 166

 Score = 95.2 bits (235), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 48/149 (32%), Positives = 86/149 (57%), Gaps = 1/149 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T     KI++E+ +R+   R + ++A+ EARA GDLSEN EY+AAK+ +N NE R+  L
Sbjct: 5   LTESDVKKIKEEIEYRKIVVRKKELEAVKEARAQGDLSENFEYKAAKQDKNRNESRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E ++  A ++   +   D I    TV L  ++  + + Y+IV     +  +GL+SI SP+
Sbjct: 65  ERMLKTANIVSDDSKE-DEIGINNTVDLYFEDDEEVETYRIVTSVRGNSLAGLISIESPL 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
            +A++G ++GD + + A        + ++
Sbjct: 124 GKAVLGHKVGDRVKIPAGDDGYYVVVKRI 152


>gi|187735038|ref|YP_001877150.1| GreA/GreB family elongation factor [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425090|gb|ACD04369.1| GreA/GreB family elongation factor [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 615

 Score = 95.2 bits (235), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 2/156 (1%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           + I V+ +  +  ++EL      + P  +     +RA GDL EN  YQ AKE++ +   R
Sbjct: 457 EPIFVSWESLEARKKELEELVNVKIPENLHNKKISRAEGDLRENGGYQDAKEVEKVLNRR 516

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
            AELE+ +  A   D +     R A G  V+L   N G+   Y I+G  + + +  +VS 
Sbjct: 517 RAELEHALALARGTDFAVTDTSRAAMGTKVTLQPLNGGEPVVYTILGAWDTNPEKHIVSY 576

Query: 123 SSPIARALIGKELGDIISVNAPGGEKT--YEILQVL 156
            S + + L GK +GD + +    G+K   Y I ++ 
Sbjct: 577 LSQVGKELTGKSVGDQVKIVPMDGDKKKVYTITKIE 612


>gi|302672254|ref|YP_003832214.1| transcription elongation factor GreA/GreB2 [Butyrivibrio
           proteoclasticus B316]
 gi|302396727|gb|ADL35632.1| transcription elongation factor GreA/GreB2 [Butyrivibrio
           proteoclasticus B316]
          Length = 167

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/151 (31%), Positives = 82/151 (54%), Gaps = 2/151 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T K  + ++ E+  R+   R  +++ + EARA GDLSEN EY AAK+ +N NE R+  L
Sbjct: 5   LTRKDIEDMEAEIEHRKVVVRKELLEHVKEARAQGDLSENFEYYAAKKAKNQNESRIRFL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E +I  A+VID +T          +V++  +  G ++ Y+IV     +   GL+S+ SP+
Sbjct: 65  ERMIKTAKVIDDNTTEDQVG-MNKSVTVRIEEDGSEETYKIVTTMRQNSLKGLISVESPL 123

Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156
            + L+G  +GD +++           I ++ 
Sbjct: 124 GKQLLGHRVGDRVNIKVSDNYSYEITITKIE 154


>gi|297566645|ref|YP_003685617.1| GreA/GreB family elongation factor [Meiothermus silvanus DSM 9946]
 gi|296851094|gb|ADH64109.1| GreA/GreB family elongation factor [Meiothermus silvanus DSM 9946]
          Length = 158

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 77/158 (48%), Gaps = 3/158 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +I +T  G++++++EL   ++       + + E     D  +++  + AK  +   E
Sbjct: 1   MAREIRLTRDGYERLKRELEQ-ERARLQDATRILQELMESSDDYDDSGLEDAKREKARIE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-- 118
            R+  LE+ ++RA VI+ +   G             +  G++   Q+V   EA V     
Sbjct: 60  ARIDSLEDTLSRAVVIEGAQEKGVVTLGAIVTLKAREGKGEQMEVQVVAPAEASVLENPM 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +S  SP+ +AL+G++LG+ + +  P G + +E++ V 
Sbjct: 120 KISDESPMGKALLGRKLGETVHLETPKGHREFEVISVR 157


>gi|257057149|ref|YP_003134981.1| transcription elongation factor GreA [Saccharomonospora viridis DSM
           43017]
 gi|256587021|gb|ACU98154.1| transcription elongation factor GreA [Saccharomonospora viridis DSM
           43017]
          Length = 172

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 63/154 (40%), Gaps = 3/154 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T   +D+++ EL       RP I   I+ +R  GDL EN  Y AA+E Q   E R+  
Sbjct: 11  WLTQDAYDRLKNELDELIAN-RPVIAAKINASREEGDLKENGGYHAAREEQGQQEARIRH 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ ++  A+V +     G            + +  ++       ++       + S  SP
Sbjct: 70  LQELLRSAKVGEAPKDDGIAEPGMVLTVRYDGDDDEETFLLATREEGGSGSLEVYSPDSP 129

Query: 126 IARALIGKELGDIISVNAPGG-EKTYE-ILQVLW 157
           + +AL+G +  +      P G  +    I  V +
Sbjct: 130 LGKALLGAKENESREYQLPNGKTQKVTLIKAVPY 163


>gi|108761121|ref|YP_634997.1| GreA/GreB family transcription elongation factor [Myxococcus
           xanthus DK 1622]
 gi|108465001|gb|ABF90186.1| transcription elongation factor, GreA/GreB family [Myxococcus
           xanthus DK 1622]
          Length = 167

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 20/157 (12%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQA--AKELQNLNE 60
           +K  +T +G+  +Q+EL                 A A G   +  E+    A   +   E
Sbjct: 26  EKRYITPEGYRALQEEL-----------------AAAQGPDPKAGEFTELEAGVRRKERE 68

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+ EL  ++    V++       R+ FGA V L +++ G    Y+IVG  E+DV++G +
Sbjct: 69  RRVQELAAVLEDVRVVEPDASQAGRVFFGAWVELEDEDGGPV-RYRIVGPDESDVKAGRL 127

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+ SP+ARAL+GKE+G+ + V+ P G   Y +  V +
Sbjct: 128 SVESPLARALLGKEVGESVVVDRPRGPVEYTVTAVDY 164


>gi|26513900|gb|AAN78348.1| transcription elongation factor GreA [Listonella anguillarum]
          Length = 127

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 55/128 (42%), Positives = 92/128 (71%), Gaps = 2/128 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G   +++EL    +  RP+I +AI+ AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTVRGEQFVREELDRLLK-LRPQITQAIATARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VIDI+ M    ++ FG+TV+L++ ++ + K YQIVG+ EA+++SG +
Sbjct: 60  QIRDIEYKLSVAQVIDITKMENTGKVIFGSTVTLIDSDTDEVKRYQIVGEDEAEIKSGRI 119

Query: 121 SISSPIAR 128
           S+SSPIAR
Sbjct: 120 SVSSPIAR 127


>gi|260438639|ref|ZP_05792455.1| transcription elongation factor GreA [Butyrivibrio crossotus DSM
           2876]
 gi|292809233|gb|EFF68438.1| transcription elongation factor GreA [Butyrivibrio crossotus DSM
           2876]
          Length = 166

 Score = 94.8 bits (234), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 1/148 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T     K+Q+E+ +R+   R  +++ + EARA+GDLSEN EY AAK+ +N NE R+  L
Sbjct: 5   LTENDIKKMQEEIEYRKVVLRKELLEHVKEARAHGDLSENFEYHAAKKEKNRNESRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E +I  A VI   +   +       V L  ++  + + ++IV     +  +GL+S  SPI
Sbjct: 65  EKMIKTANVISDESADDEVG-LNNKVELYFEDDDETETFKIVTTVRGNSLNGLISNESPI 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
            +A++  + GD + V    G   Y +++
Sbjct: 124 GKAVLSHKAGDRVFVEVSPGNGYYVVIK 151


>gi|148273428|ref|YP_001222989.1| transcription elongation factor GreA [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147831358|emb|CAN02314.1| transcription elongation factor GreA [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 162

 Score = 94.8 bits (234), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/161 (31%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 1   MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M  +     +T + FD++ +EL     + R  I K I  AR  GDL EN  Y AAKE Q 
Sbjct: 1   MAQEQAVTWLTQEAFDRLSRELDTLSVQGREEIAKKIEIAREEGDLKENGGYHAAKEEQG 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQ 116
             E R+ +L  ++  AE+ D    S   +  G  V+     +GD+  + +   + A D  
Sbjct: 61  KIEARIRQLTQLLRTAELGDAP-ESHGVVEPGTVVTA--LIAGDETKFLLGNREIAGDSD 117

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
             + S  SP+  A+IG E+G   +  AP G E   EI  V 
Sbjct: 118 LDVYSEQSPLGAAIIGWEVGQKGAYTAPNGREIPVEIQAVE 158


>gi|332654125|ref|ZP_08419869.1| transcription elongation factor GreA [Ruminococcaceae bacterium
           D16]
 gi|332517211|gb|EGJ46816.1| transcription elongation factor GreA [Ruminococcaceae bacterium
           D16]
          Length = 167

 Score = 94.8 bits (234), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 51/137 (37%), Positives = 83/137 (60%), Gaps = 1/137 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T K  + +++EL  R+   RP++++A+ EARA+GDLSEN EY+AAK+ +N NE R+  L
Sbjct: 5   LTQKDLELMRKELDHRRIVLRPQLLEAVKEARAFGDLSENFEYKAAKQEKNRNESRIRFL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           EN+I  A VI   + S         V++  ++  +++ YQIV     D   GL+S  SP+
Sbjct: 65  ENMIKTAVVISDQSGSDQVG-LYDKVTVYMEDDDEEEVYQIVTTMRQDALKGLISKESPV 123

Query: 127 ARALIGKELGDIISVNA 143
            R L+G+ +GD + +  
Sbjct: 124 GRCLLGRRVGDRVHIQV 140


>gi|170782755|ref|YP_001711089.1| putative transcription elongation factor [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169157325|emb|CAQ02512.1| putative transcription elongation factor [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 162

 Score = 94.8 bits (234), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 52/161 (32%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 1   MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M  +     +T + FD++ +EL     + R  I K I  AR  GDL EN  Y AAKE Q 
Sbjct: 1   MAQEQAVTWLTQEAFDRLSRELDTLSVQGREEIAKKIEIAREEGDLKENGGYHAAKEEQG 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQ 116
             E R+ +L  ++  AEV D    S   +  G  V+     +GD+  + +   + A D  
Sbjct: 61  KIEARIRQLTQLLRTAEVGDAP-ESHGVVEPGTVVTA--LIAGDETKFLLGNREIAGDSD 117

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
             + S  SP+  A+IG E+G   +  AP G E   EI  V 
Sbjct: 118 LDVYSEQSPLGAAIIGWEVGQKGAYTAPNGREIPVEIQAVE 158


>gi|328948722|ref|YP_004366059.1| Transcription elongation factor, GreA/GreB, N-terminal protein
           [Treponema succinifaciens DSM 2489]
 gi|328449046|gb|AEB14762.1| Transcription elongation factor, GreA/GreB, N-terminal protein
           [Treponema succinifaciens DSM 2489]
          Length = 914

 Score = 94.8 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 73/137 (53%)

Query: 20  RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIS 79
              ++ + P++   I EA+  GDL ENAEY AAKE Q+    ++++L+  ++RA V D +
Sbjct: 774 EDIEKVQLPKVAAEIGEAKEKGDLKENAEYIAAKEAQHRLNVQLSKLKEELSRAVVFDPT 833

Query: 80  TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
           T +   ++FG  V+L      ++  Y I+G  E++V  G++S  SP+   L+  + G+  
Sbjct: 834 TATTSLVSFGTKVTLHNNLENNEVVYTILGPWESNVDEGIISYLSPLGNNLLDMKNGEQR 893

Query: 140 SVNAPGGEKTYEILQVL 156
           +      +  Y +  + 
Sbjct: 894 AFTINDHKYDYTVKSIE 910


>gi|224282816|ref|ZP_03646138.1| transcription elongation factor GreA [Bifidobacterium bifidum NCIMB
           41171]
 gi|310287270|ref|YP_003938528.1| transcription elongation factor greA [Bifidobacterium bifidum S17]
 gi|311064119|ref|YP_003970844.1| transcription elongation factor [Bifidobacterium bifidum PRL2010]
 gi|313139975|ref|ZP_07802168.1| transcription elongation factor GreA [Bifidobacterium bifidum NCIMB
           41171]
 gi|309251206|gb|ADO52954.1| Transcription elongation factor greA [Bifidobacterium bifidum S17]
 gi|310866438|gb|ADP35807.1| GreA Transcription elongation factor [Bifidobacterium bifidum
           PRL2010]
 gi|313132485|gb|EFR50102.1| transcription elongation factor GreA [Bifidobacterium bifidum NCIMB
           41171]
          Length = 159

 Score = 94.8 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 6/152 (3%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           + +T + FD ++ EL  RQ + R  I K I+ ARA GDLSEN  YQAA+E Q  NEGR+ 
Sbjct: 7   VLLTQEAFDTLKDELAHRQGQYREEITKRIAAARAEGDLSENGGYQAAREEQAKNEGRIN 66

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGLVSIS 123
           EL   +  A +++           G    +  + +G +  Y +     +   +  ++S  
Sbjct: 67  ELTVKLRNATIVEAP----KAGKVGNGSLVTLELAGREMTYALGSRDIKVATKYDVISPE 122

Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           SPI  A++G   GD +S  AP G E +  I +
Sbjct: 123 SPIGAAILGANEGDTVSYKAPNGREISVVIKE 154


>gi|329948133|ref|ZP_08295005.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328522866|gb|EGF49971.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 161

 Score = 94.5 bits (233), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 7/161 (4%)

Query: 1   MVDK---IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M ++     +T + +D++  EL  R+  ER  I + +  AR  GDL ENA Y AA+E   
Sbjct: 1   MSEQSQGTWLTQEAYDRLSAELEHRKTTERKEIAQRVEAARQEGDLRENAGYHAAREEAG 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
           LNE R+ +LE  +  A++ + +         G  V+                  E     
Sbjct: 61  LNEARIIQLEETLENAQIGEAADDGSISA--GTIVTAKVAGKEQVFALGGQEITEDVPDG 118

Query: 118 GLV-SISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
             V S  +P+ +AL+G   GD ++  AP G E   +I++V 
Sbjct: 119 VKVFSPDAPLGQALMGHRAGDTVAYEAPTGREIQAQIVKVE 159


>gi|296140831|ref|YP_003648074.1| transcription elongation factor GreA [Tsukamurella paurometabola
           DSM 20162]
 gi|296028965|gb|ADG79735.1| transcription elongation factor GreA [Tsukamurella paurometabola
           DSM 20162]
          Length = 164

 Score = 94.5 bits (233), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 4/149 (2%)

Query: 9   SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELEN 68
            +  ++++ EL       RP I   I+E R  GDL EN  Y AA+E Q   E R+ +L+ 
Sbjct: 11  PESHERLKNELDALIAN-RPVIAAEINERREEGDLKENGGYHAAREEQGQQEARIRQLQE 69

Query: 69  IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLVSISSPI 126
           ++  A+V +  T SG  +         + +  D + + I   +E   D +  + S +SP+
Sbjct: 70  LLNNAKVGEAPTQSGVALPGSVVKVYYDGDEKDTETFLIATREEGAQDGELEVYSPNSPL 129

Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQ 154
             ALI  ++G+      P G      ++ 
Sbjct: 130 GAALIDAKVGESREYTIPSGATIKVTLVS 158


>gi|302530117|ref|ZP_07282459.1| transcription elongation factor greA [Streptomyces sp. AA4]
 gi|302439012|gb|EFL10828.1| transcription elongation factor greA [Streptomyces sp. AA4]
          Length = 163

 Score = 94.5 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 3/149 (2%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D     +T   +D+++ EL     E RP I   I+++R  GDL EN  Y AA+E Q  
Sbjct: 1   MSDTKVTWLTQDAYDRLKHELDEMI-ENRPVIAARINDSREEGDLKENGGYHAAREEQGQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+  L+ ++  A+V +     G            + +  ++K      ++ A+    
Sbjct: 60  AEARIRHLQELLRNAKVGEAPDDDGTAGPGKVLTVKYDGDDEEEKFLLATREEGAEGALD 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE 147
           + S  SP+ +AL+G + G+      P G+
Sbjct: 120 VYSPESPLGKALLGAKEGESREYELPNGK 148


>gi|284989519|ref|YP_003408073.1| transcription elongation factor GreA [Geodermatophilus obscurus DSM
           43160]
 gi|284062764|gb|ADB73702.1| transcription elongation factor GreA [Geodermatophilus obscurus DSM
           43160]
          Length = 167

 Score = 94.1 bits (232), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 6/155 (3%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           + +T +  D+++ EL       RP +   I+  R  GDL EN  Y AAK+ Q   E R+ 
Sbjct: 12  VWLTQEAHDRLRAELDQLVA-GRPAMAAEINARREEGDLRENGGYHAAKDEQGKQEARIR 70

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSI 122
           +LE+++ +A V D  T +        TV  +     D     ++G +E    +GL   S 
Sbjct: 71  QLEDLLRKARVGDAPTTATHAAT--GTVITIRFRGEDDTEKFLLGSREIAGTTGLQVYSP 128

Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
            S +  A++G E G  ++  AP G + T +++ V 
Sbjct: 129 ESALGSAILGAEPGTTVTYQAPNGRDITVDVVAVE 163


>gi|291550053|emb|CBL26315.1| transcription elongation factor GreA [Ruminococcus torques L2-14]
          Length = 167

 Score = 94.1 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 85/150 (56%), Gaps = 1/150 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T    +KIQ E+  R+  ER  +I+A+ EAR++GDLSEN EY AAK+ +N NE R+
Sbjct: 2   RERLTKNDVEKIQAEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKAKNQNESRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             LE ++  AE+++      D I    TV L  ++  + + Y+IV        +GLVSI 
Sbjct: 62  RYLERMLKTAEIVE-DHSKEDEIGLNNTVELYCEDDDEVETYRIVTSVRGSSLNGLVSIE 120

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEIL 153
           SPI +AL+G + G+ + +        Y ++
Sbjct: 121 SPIGKALLGHKEGERVYIKVNDDFGYYVVI 150


>gi|213163103|ref|ZP_03348813.1| transcription elongation factor GreB [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 125

 Score = 93.7 bits (231), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 41/125 (32%), Positives = 69/125 (55%), Gaps = 1/125 (0%)

Query: 34  ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVS 93
           ++ A + GD SENA+YQ  K+     + R+  L   +   +++D S     ++ FGA V 
Sbjct: 1   MTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVE 60

Query: 94  LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
           +   + GD   ++IVG  E   +   +SI SP+ARAL+ KE+GD+  VN P GE  + + 
Sbjct: 61  IENDD-GDTLKFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPVGEANWYVN 119

Query: 154 QVLWI 158
            + ++
Sbjct: 120 AIEYV 124


>gi|160938130|ref|ZP_02085486.1| hypothetical protein CLOBOL_03024 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438934|gb|EDP16690.1| hypothetical protein CLOBOL_03024 [Clostridium bolteae ATCC
           BAA-613]
          Length = 167

 Score = 93.7 bits (231), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/150 (33%), Positives = 86/150 (57%), Gaps = 2/150 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+    K+Q+E+ +R+   R   ++A+ EARA+GDLSEN EY+AAK+ +N NE R+  L
Sbjct: 5   LTANDIKKMQEEIEYRKLVVRREALEAVKEARAHGDLSENFEYKAAKQDKNRNESRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E +I  A +I  ++  G+    G TV +   +  + + Y++V     +   GL+SI SP+
Sbjct: 65  EKMIKTARIISNNSREGEVG-LGDTVEVYIPDDDETERYKLVTTVRGNSLQGLISIDSPL 123

Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQV 155
            +A+ G+++GD + V          EI  +
Sbjct: 124 GKAIRGRKMGDKVYVKVDDHFGYDVEIRSI 153


>gi|238924211|ref|YP_002937727.1| transcription elongation factor GreA [Eubacterium rectale ATCC
           33656]
 gi|238875886|gb|ACR75593.1| transcription elongation factor GreA [Eubacterium rectale ATCC
           33656]
 gi|291524937|emb|CBK90524.1| Transcription elongation factor [Eubacterium rectale DSM 17629]
 gi|291529078|emb|CBK94664.1| Transcription elongation factor [Eubacterium rectale M104/1]
          Length = 167

 Score = 93.7 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 2/151 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+    K++ E+ +R+   R + +  +  ARA GDLSEN EY+AAK+ +N NE R+  L
Sbjct: 5   LTANDIKKMEDEIEYRKLVVRKKALDDVKVARAQGDLSENFEYKAAKQFKNQNESRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E +I  A VI   +   +   F  TV +  ++  + + Y+IV     +    L+S  SP+
Sbjct: 65  EKMIKTAVVISDESKDDEVGMFN-TVDVYFEDDDETETYKIVTTVRGNSLKNLISKESPL 123

Query: 127 ARALIGKELGDIISVNAPGG-EKTYEILQVL 156
             A+ G ++GD   V          +I+++ 
Sbjct: 124 GAAIFGHKVGDRCEVKVNDDYSYFVKIMKIQ 154


>gi|297538325|ref|YP_003674094.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
 gi|297257672|gb|ADI29517.1| GreA/GreB family elongation factor [Methylotenera sp. 301]
          Length = 165

 Score = 93.3 bits (230), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 15/153 (9%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G  ++Q +    +Q+++  +                 +  A ++        + 
Sbjct: 28  NYVTPFGLAQLQTQATALEQQQQALLPSK--------------DDPATQQTLAPLRRDLR 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE  +    +ID +T   D + FGATV++ ++       + IVG+ EAD+    VS  S
Sbjct: 74  YLETRLENVILIDPTTQPKDTVLFGATVNVEDEEGNP-HQFTIVGEDEADIALNKVSWVS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           PIA+ALIG ++G+ +S   P G    EIL + +
Sbjct: 133 PIAKALIGHKVGETVSWQRPAGNLNLEILAINY 165


>gi|325663588|ref|ZP_08151995.1| hypothetical protein HMPREF0490_02736 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325470274|gb|EGC73506.1| hypothetical protein HMPREF0490_02736 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 167

 Score = 93.3 bits (230), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/148 (30%), Positives = 83/148 (56%), Gaps = 1/148 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T     K+++E+ +R+   R  +++ + EARA+GDLSEN EY AAK+ +N NE R+  L
Sbjct: 5   LTKNDIKKMREEIEYRKIVLRKELLEDVKEARAHGDLSENFEYHAAKKEKNKNESRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E +I  A+++   +   +      TV L  +   + + +++V     +   GL+S  SPI
Sbjct: 65  ERMIKTAKIVSDESKEDEVG-LNNTVHLYFEEDDEVEVFKLVTTVRGNSLKGLISTESPI 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
            +A++GK+ GD + +   G    Y +++
Sbjct: 124 GKAILGKKAGDRVFIRVSGDAGYYVVVK 151


>gi|291456474|ref|ZP_06595864.1| putative transcription elongation factor GreA [Bifidobacterium
           breve DSM 20213]
 gi|291381751|gb|EFE89269.1| putative transcription elongation factor GreA [Bifidobacterium
           breve DSM 20213]
          Length = 159

 Score = 93.3 bits (230), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 49/150 (32%), Positives = 82/150 (54%), Gaps = 7/150 (4%)

Query: 1   MVD-KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M + K+ + T + ++K+++EL  R+ E R  I   I+ ARA GDLSEN  YQAA+E Q+ 
Sbjct: 1   MAEDKVYLLTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSK 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQS 117
           NEGR+ EL   +  +++I+    +      G    +  + +G++  Y +      A    
Sbjct: 61  NEGRITELTVKLRDSKIIE----NAPEGTVGNGSVVTIELNGNEMTYVLGSRDIVAGTDY 116

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE 147
            +++  SPI RA+ G ++GD +S  AP G 
Sbjct: 117 EIMTPDSPIGRAIEGAKVGDTVSYTAPNGR 146


>gi|300789906|ref|YP_003770197.1| transcription elongation factor GreA [Amycolatopsis mediterranei
           U32]
 gi|299799420|gb|ADJ49795.1| transcription elongation factor GreA [Amycolatopsis mediterranei
           U32]
          Length = 167

 Score = 93.3 bits (230), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 1/144 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T   +D+++ EL     E RP I   I+++R  GDL EN  Y AA+E Q   E R+  
Sbjct: 11  WLTQDAYDRLKHELDEMI-ENRPVIAARINDSREEGDLKENGGYHAAREEQGQAEARIRH 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ ++  A+V +     G            E +  D+K      ++ A+ +  + S  SP
Sbjct: 70  LQELLRSAKVGEKPANDGTAGPGKVLTVRYEGDDEDEKFLLATREEGAEGELDVYSPESP 129

Query: 126 IARALIGKELGDIISVNAPGGEKT 149
           + +AL+G + G+      P G+  
Sbjct: 130 LGKALLGAKEGESREYELPNGKVQ 153


>gi|330465846|ref|YP_004403589.1| transcription elongation factor grea [Verrucosispora maris
           AB-18-032]
 gi|328808817|gb|AEB42989.1| transcription elongation factor grea [Verrucosispora maris
           AB-18-032]
          Length = 165

 Score = 93.3 bits (230), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 2/152 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++   +D+++ EL       RP I   I+  R  GDL EN  Y AA+E Q   EGR+  
Sbjct: 11  WLSQDAYDRLKAELDELIAN-RPIIAAEINARREEGDLRENGGYHAAREEQGKAEGRILY 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ ++  A+V +  T          T+   +     +       +  +     + S  S 
Sbjct: 70  LKELLRTAQVGEAPTADAVAPGMVVTIYFDDDADDTETFLLGSREIASTTDLTVYSPESA 129

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           + +A++G + G   +  AP G +    ++   
Sbjct: 130 LGKAILGGKAGQTCTYTAPSGADIKVTVVSFE 161


>gi|313679936|ref|YP_004057675.1| grea/greb family elongation factor [Oceanithermus profundus DSM
           14977]
 gi|313152651|gb|ADR36502.1| GreA/GreB family elongation factor [Oceanithermus profundus DSM
           14977]
          Length = 156

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 84/157 (53%), Gaps = 5/157 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  ++ +T  G++++Q EL   +++      + + E     +  E++  + AK  +   E
Sbjct: 1   MAREVKLTKAGYERLQLELAE-EKKRLEEATRILQEQMESFEDYEDSGLEEAKREKAQIE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-- 118
            R+  LE+I+ RA +I+ +    D++  G+ V + ++ +G+    QIV   EA V     
Sbjct: 60  ARVDALEDILHRAVIIESAEG--DKVTLGSVVVVQDEKTGESLTLQIVAPAEATVLEEPM 117

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            VS  SP+ +AL+G++ GD + V+ P G++ Y IL V
Sbjct: 118 RVSDESPLGKALLGRKEGDKVRVDTPSGKRRYRILSV 154


>gi|238062787|ref|ZP_04607496.1| transcription elongation factor greA [Micromonospora sp. ATCC
           39149]
 gi|237884598|gb|EEP73426.1| transcription elongation factor greA [Micromonospora sp. ATCC
           39149]
          Length = 166

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 6/154 (3%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++    D++Q EL       RP I   I+  R  GDL EN  Y AA+E Q   EGR+  
Sbjct: 12  WLSQDAHDRLQAELDELIAN-RPAIAAEINARREEGDLRENGGYHAAREEQGKQEGRILY 70

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123
           L+ ++  A+V +  +   D ++ G  V++   +  D     ++G +E    + L   S  
Sbjct: 71  LKELLRTAQVGEAPSA--DTVSPGMVVTIYFDDDTDDTETFLLGSREISSTTELTVYSPE 128

Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           S + ++++G   G  ++  AP G +    +++  
Sbjct: 129 SALGKSILGTRPGQTVTYTAPSGADIKVTVVRFE 162


>gi|313201038|ref|YP_004039696.1| grea/greb family elongation factor [Methylovorus sp. MP688]
 gi|312440354|gb|ADQ84460.1| GreA/GreB family elongation factor [Methylovorus sp. MP688]
          Length = 167

 Score = 93.3 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G   +QQ+++  ++E      +               +   A++  ++    + 
Sbjct: 28  NYVTPHGLQLLQQDMQALEKERATLSARK--------------DDPTAQQRLSMINRDLR 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE  +  A ++D +  S +++ FGA V + +   G ++ +QIVG+ EAD+    VS  S
Sbjct: 74  YLEARLEAAIIVDPTQQSREQVLFGAHVHVEDDE-GQRQVFQIVGEDEADIAQNKVSWIS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+ARALIG + G++++   P G    EI+ + +
Sbjct: 133 PLARALIGHKRGEVVTWQRPAGNLELEIMDIHY 165


>gi|213163601|ref|ZP_03349311.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 109

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/108 (42%), Positives = 77/108 (71%), Gaps = 1/108 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1   MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIV 108
           R+ ++E  ++ A+VID++ M  + R+ FGATV+++  ++ +++ Y+IV
Sbjct: 61  RIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEEQTYRIV 108


>gi|145593481|ref|YP_001157778.1| transcription elongation factor GreA [Salinispora tropica CNB-440]
 gi|145302818|gb|ABP53400.1| transcription elongation factor GreA [Salinispora tropica CNB-440]
          Length = 165

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 2/152 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ +  D++Q EL       RP I   I+  R  GDL EN  Y AA+E Q   EGR+  
Sbjct: 11  WLSQEAHDRLQAELDGLIAN-RPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRIVY 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ ++  A+V +  T          T+   +     ++      +  +     + S  S 
Sbjct: 70  LKELLRTAQVGEAPTADTVAPGMVVTIYFDDDKDDTERFLLGSREISSTTDLTVYSPESA 129

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           I +A++G   G   +  AP G +    ++   
Sbjct: 130 IGQAILGCRPGQTCTYTAPSGADIKVTVVAFE 161


>gi|159036522|ref|YP_001535775.1| transcription elongation factor GreA [Salinispora arenicola
           CNS-205]
 gi|157915357|gb|ABV96784.1| transcription elongation factor GreA [Salinispora arenicola
           CNS-205]
          Length = 165

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 2/152 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ + +D++Q EL       RP I   I+  R  GDL EN  Y AA+E Q   EGR+  
Sbjct: 11  WLSQEAYDRLQAELDGLIAN-RPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRILY 69

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ ++  A+V +  T          T+   +     ++      +  +     + S  S 
Sbjct: 70  LKELLRTAQVGEAPTADTIAPGMVVTIYFDDDKDDTERFLLGSREIASTTDLTVYSPESA 129

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           I +A++G   G   +  AP G +    ++   
Sbjct: 130 IGQAILGCRSGQTCTYTAPSGADIKVTVVAFE 161


>gi|218290642|ref|ZP_03494733.1| transcription elongation factor GreA [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239307|gb|EED06505.1| transcription elongation factor GreA [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 133

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 78/133 (58%), Gaps = 1/133 (0%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M DK + +T +G  K+++EL   +  +R  + + I  A +YGD+SEN+EY+ AK  Q   
Sbjct: 1   MADKEVLLTPEGLRKLEEELELLKSVKRREVAERIKVAISYGDISENSEYEDAKNEQAFI 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  LE  +  A VI+   +  + ++ G+TV +++ +  ++  Y IVG  EA+     
Sbjct: 61  EGRIMTLEKQLRNARVINEDEVDTNVVSIGSTVKVLDLDLDEEVEYTIVGSAEANPAENK 120

Query: 120 VSISSPIARALIG 132
           +S  SP+ +AL+G
Sbjct: 121 ISNESPVGKALLG 133


>gi|331091714|ref|ZP_08340548.1| hypothetical protein HMPREF9477_01191 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403471|gb|EGG83030.1| hypothetical protein HMPREF9477_01191 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 167

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 80/150 (53%), Gaps = 1/150 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T +   K+++E+ +R+   R   ++A+ EARA+GDLSEN EY AAK+ +N NE R+ 
Sbjct: 3   NQLTEEDIKKMEEEIEYRRLVVRKEALEAVKEARAHGDLSENFEYHAAKKDKNKNESRIR 62

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L+ +I  A+++   +   +       V +  ++  + + +++V     +     +S  S
Sbjct: 63  YLQRMIRTAQIVSDDSKEDEVG-INKAVEVYFEDDDECETFKLVTTVRGNSIDNRISTES 121

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQ 154
           PI +A++G + GD + V        Y +++
Sbjct: 122 PIGKAILGHKAGDRVFVKVNENAGYYVVIK 151


>gi|50955274|ref|YP_062562.1| transcription elongation factor [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50951756|gb|AAT89457.1| transcription elongation factor [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 163

 Score = 92.5 bits (228), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 5/152 (3%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T   +D++  EL       R  I K I  AR  GDL EN  Y AAK+ Q   E R+ +L
Sbjct: 10  LTQDAYDRLAAELEELSVNGRAEIAKRIEAAREEGDLKENGGYHAAKDEQGKIEARIVQL 69

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSISSP 125
             ++  A V   +  S   +  G  V+     +GD+  + I   + A      + S  SP
Sbjct: 70  TALLRSATVG-AAPESHGIVEPGTVVTA--TIAGDESAFLIGNREIATGTELPVYSEQSP 126

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVL 156
           +  A++G ++GD     AP G      I +V 
Sbjct: 127 LGAAILGLKIGDTTEYTAPNGRQIAVRITKVE 158


>gi|239621777|ref|ZP_04664808.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239514968|gb|EEQ54835.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 159

 Score = 92.5 bits (228), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 7/150 (4%)

Query: 1   MVD-KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M + K+ + T + ++K+++EL  R+ E R  I   I+ ARA GDLSEN  YQAA+E Q+ 
Sbjct: 1   MAEDKVYLLTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAARETQSK 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQS 117
           NEGR+ EL   +  +++I+    +      G    +  + +G++  Y +      A    
Sbjct: 61  NEGRITELTVKLRDSKIIE----NAPEGTVGEGSVVTIELNGNEMTYVLGSRDIVAGTDY 116

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE 147
            +++  SPI +A+ G ++GD++S  AP G 
Sbjct: 117 DIMTPDSPIGKAIEGAKVGDVVSYTAPNGR 146


>gi|291548409|emb|CBL21517.1| Transcription elongation factor [Ruminococcus sp. SR1/5]
          Length = 166

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/151 (31%), Positives = 81/151 (53%), Gaps = 1/151 (0%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T K  +KI+QE+  R+   R   I+A+ EARA GDLSEN EY AAK+ +N NE R+
Sbjct: 2   REQLTRKDVEKIEQEIEHRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             LE ++  A ++  ++ S +       V ++ +   + + Y++V     +     +SI 
Sbjct: 62  RYLERMLKTASIVSDASRSDEVG-MDDIVEVLFEEDNEVEKYKLVTSIRGNSMENRISIE 120

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           SPI +AL G  +GD + V        Y +++
Sbjct: 121 SPIGKALRGHRVGDRVEVKVNDDYSYYLVIK 151


>gi|302865433|ref|YP_003834070.1| transcription elongation factor GreA [Micromonospora aurantiaca
           ATCC 27029]
 gi|315501981|ref|YP_004080868.1| transcription elongation factor grea [Micromonospora sp. L5]
 gi|302568292|gb|ADL44494.1| transcription elongation factor GreA [Micromonospora aurantiaca
           ATCC 27029]
 gi|315408600|gb|ADU06717.1| transcription elongation factor GreA [Micromonospora sp. L5]
          Length = 166

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 6/154 (3%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++   +D++Q EL       RP I   I+  R  GDL EN  Y AA+E Q   EGR+  
Sbjct: 12  WLSQDAYDRLQAELDELIAN-RPVIAAEINARREEGDLRENGGYHAAREEQGKAEGRILY 70

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123
           L+ ++  A+V +      D ++ G  V +   +  D     ++G +E    + L   S  
Sbjct: 71  LKELLRTAKVGEAPDT--DAVSPGMVVKIYFDDDADDSETFLLGSREIASTTDLTVYSPE 128

Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           S + +A++G + G   +  AP G +    I+   
Sbjct: 129 SALGKAILGGKAGQTCTYTAPSGADIKVTIVSFE 162


>gi|324538258|gb|ADY49528.1| Transcription elongation factor greA [Ascaris suum]
          Length = 148

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/149 (34%), Positives = 97/149 (65%), Gaps = 3/149 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M + I +T +  +++++E ++    +RP +++ I EA+++GDLSEN+EY +A+E Q+  E
Sbjct: 1   MNNDIFLTKEQLEELKEEYQYYVHTKRPEVVERIKEAKSFGDLSENSEYDSAREEQSFVE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI--VGDQEADVQSG 118
            ++ EL+ II+ A++I   T S   +  G+TV+  +  S +K+ Y I  VG    D ++ 
Sbjct: 61  AKIKELDAIISNAQIIGAVTNSDTVV-LGSTVTYEDTTSKEKQTYTILGVGANPLDQKNP 119

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE 147
            +S ++P+ARAL+G ++GDI+++ AP G 
Sbjct: 120 SISTNTPVARALLGCKVGDIVTIEAPMGR 148


>gi|227497804|ref|ZP_03927989.1| transcription elongation factor GreA [Actinomyces urogenitalis DSM
           15434]
 gi|226832764|gb|EEH65147.1| transcription elongation factor GreA [Actinomyces urogenitalis DSM
           15434]
          Length = 165

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/154 (30%), Positives = 80/154 (51%), Gaps = 6/154 (3%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T   +D++  EL  RQ+ +R  I + +  AR  GDL ENA Y AA+E   LNE R+A+
Sbjct: 13  WLTKDAYDRLTAELARRQEVDRKEIAQRVEAARQEGDLRENAGYHAAREEAALNEARIAQ 72

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--LVSIS 123
           L  ++ +AE+ +++           T+   +  + ++       +  ADV  G  + S  
Sbjct: 73  LTELLEKAEIGEVADDGTVSA---GTIVTAKIGAKEQVFALGGQEITADVPEGVKVFSPD 129

Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           +P+ +AL+G + G+ +S  AP G E   EI+ V 
Sbjct: 130 APLGKALMGHKAGETVSYQAPNGKEIKAEIIDVK 163


>gi|23465584|ref|NP_696187.1| transcription elongation factor GreA [Bifidobacterium longum
           NCC2705]
 gi|189439631|ref|YP_001954712.1| transcription elongation factor [Bifidobacterium longum DJO10A]
 gi|213692643|ref|YP_002323229.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|296453851|ref|YP_003660994.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp.
           longum JDM301]
 gi|312133029|ref|YP_004000368.1| grea [Bifidobacterium longum subsp. longum BBMN68]
 gi|317481865|ref|ZP_07940892.1| prokaryotic transcription elongation factor [Bifidobacterium sp.
           12_1_47BFAA]
 gi|322688807|ref|YP_004208541.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690797|ref|YP_004220367.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23326251|gb|AAN24823.1| transcription elongation factor GreA [Bifidobacterium longum
           NCC2705]
 gi|189428066|gb|ACD98214.1| Transcription elongation factor [Bifidobacterium longum DJO10A]
 gi|213524104|gb|ACJ52851.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|291517127|emb|CBK70743.1| Transcription elongation factor [Bifidobacterium longum subsp.
           longum F8]
 gi|296183282|gb|ADH00164.1| GreA/GreB family elongation factor [Bifidobacterium longum subsp.
           longum JDM301]
 gi|311774017|gb|ADQ03505.1| GreA [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916656|gb|EFV38051.1| prokaryotic transcription elongation factor [Bifidobacterium sp.
           12_1_47BFAA]
 gi|320455653|dbj|BAJ66275.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320458793|dbj|BAJ69414.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320460143|dbj|BAJ70763.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 159

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 7/150 (4%)

Query: 1   MVD-KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M + K+ + T + ++K+++EL  R+ E R  I   I+ ARA GDLSEN  YQAA+E Q+ 
Sbjct: 1   MAEDKVYLLTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSK 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQS 117
           NEGR+ EL   +  +++I+    +      G    +  + +G++  Y +      A    
Sbjct: 61  NEGRITELTVKLRDSKIIE----NAPEGTVGEGSVVTIELNGNEMTYVLGSRDIVAGTDY 116

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE 147
            +++  SPI +A+ G ++GD++S  AP G 
Sbjct: 117 DIMTPDSPIGKAIEGAKVGDVVSYTAPNGR 146


>gi|253579767|ref|ZP_04857035.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848766|gb|EES76728.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 166

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 2/153 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T K  +KIQQE+  R+   R   I+A+ EARA GDLSEN EY AAK+ +N NE R+
Sbjct: 2   KEKLTQKDVEKIQQEIDHRKLVVRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             LEN++  A ++   +   +       V +  +   + + Y++V     +     +SI 
Sbjct: 62  RYLENMLKTATIVSDDSKDDEVG-MDDIVEVYFEEDDEIEKYKLVTSIRGNSMENRISIE 120

Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
           SPI  AL G ++GD + V          EI  +
Sbjct: 121 SPIGMALKGHKVGDRVEVKVNDNYSYFLEIRSI 153


>gi|253996329|ref|YP_003048393.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8]
 gi|253983008|gb|ACT47866.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8]
          Length = 168

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 15/153 (9%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G      EL+  ++     + +          L   A+   AK+     E  + 
Sbjct: 29  NYVTPSGAL----ELQTLEESLVAELNR----------LKLTADDTFAKDKVAEIERDLR 74

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            +   +  A ++D +  S + + FGAT+ + +        + IVG+ EAD     VS  S
Sbjct: 75  YVRARLDSAILVDPTKQSHETVLFGATIEVEDGAGAQ-HTFHIVGEDEADASINKVSWVS 133

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+A++L+G+++GD ++   P G    EIL + +
Sbjct: 134 PLAKSLLGQKVGDTVTWQRPAGNINLEILDIHY 166


>gi|154507712|ref|ZP_02043354.1| hypothetical protein ACTODO_00193 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797346|gb|EDN79766.1| hypothetical protein ACTODO_00193 [Actinomyces odontolyticus ATCC
           17982]
          Length = 178

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D   +T   +D +  EL+ R + +R  I + I  AR  GDL EN  Y AA+  Q++NE
Sbjct: 20  MADTQWLTQAQYDLLASELKERVEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE 79

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L+ ++  AEV + +      +  G  V+ +      K       D   D+   + 
Sbjct: 80  TRIQALQEMLEHAEVGE-TPADDGIVEPGMVVTALVAGREQKFLL-GSRDAGGDLGIQVF 137

Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
           S  +P+  A+IG + GD +S  AP G     EIL 
Sbjct: 138 SAQAPLGAAVIGHKAGDKLSFEAPTGRMIDVEILD 172


>gi|254492017|ref|ZP_05105195.1| transcription elongation factor GreB [Methylophaga thiooxidans
           DMS010]
 gi|224462832|gb|EEF79103.1| transcription elongation factor GreB [Methylophaga thiooxydans
           DMS010]
          Length = 147

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 2/144 (1%)

Query: 14  KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRA 73
           ++ QEL  R    R  +++A++ A A GD SENAEY   K+     + R+  L+  I   
Sbjct: 3   RLNQELSERWARRR-EVVQALAAAAAEGDRSENAEYIYRKKELRELDRRIRYLQKRIPDL 61

Query: 74  EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
            V+        R+ F A V+L E  +G++  Y+IVG  E D   G +S+ SP+ARAL+GK
Sbjct: 62  NVVHDVPDDTGRVFFAAWVTL-ETEAGEEVTYRIVGPDEIDHAKGNISVDSPLARALLGK 120

Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157
            + D   +    G K Y IL + +
Sbjct: 121 MIDDDAIIRVEDGRKQYYILAIDY 144


>gi|227546182|ref|ZP_03976231.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
           infantis ATCC 55813]
 gi|227213163|gb|EEI81035.1| transcription elongation factor GreA [Bifidobacterium longum subsp.
           infantis ATCC 55813]
          Length = 159

 Score = 92.2 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 48/150 (32%), Positives = 83/150 (55%), Gaps = 7/150 (4%)

Query: 1   MVD-KIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M + K+ + T + ++K+++EL  R+ E R  I   I+ ARA GDLSEN  YQAA+E Q+ 
Sbjct: 1   MAEDKVYLLTQEAYNKMKEELAHREGELREEIAHKIAVARAEGDLSENGGYQAAREAQSK 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-ADVQS 117
           NEGR+ EL   +  +++I+    +      G    +  + +G++  Y +      A    
Sbjct: 61  NEGRIIELTVKLRDSKIIE----NAPEGTVGEGSVVTIELNGNEMTYVLGSRDIVAGTDY 116

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGE 147
            +++  SPI +A+ G ++GD++S  AP G 
Sbjct: 117 DIMTPDSPIGKAIEGAKVGDVVSYTAPNGR 146


>gi|160878872|ref|YP_001557840.1| GreA/GreB family elongation factor [Clostridium phytofermentans
           ISDg]
 gi|160427538|gb|ABX41101.1| GreA/GreB family elongation factor [Clostridium phytofermentans
           ISDg]
          Length = 167

 Score = 92.2 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 1/150 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T    DK+Q+E+ +R+   R   I A+ EARA+GDLSEN EY AAK+ +N NEGR+ 
Sbjct: 3   NRLTKNDIDKMQEEIEYRKLTVRKEAIDAVKEARAHGDLSENFEYYAAKKDKNKNEGRIR 62

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE +I  AEVI+    S D I    TVS+  +   + + Y+++     +   GL+SI S
Sbjct: 63  YLERMIKTAEVIE-DHSSEDEIGINNTVSIYFEEDNEIEKYKLITTVRENSLQGLISIES 121

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQ 154
           P+ +A++G ++ D + V        Y I++
Sbjct: 122 PLGKAILGHKVEDRVYVKVRDDYGYYVIIK 151


>gi|296118180|ref|ZP_06836761.1| transcription elongation factor GreA [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295968738|gb|EFG81982.1| transcription elongation factor GreA [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 172

 Score = 92.2 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 5/158 (3%)

Query: 1   MVD-KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M + K  +T +   K++ EL+      RP +   I+E R  GDL ENA Y AA+E+Q+  
Sbjct: 1   MAEQKQYITPETKAKLEAELQMLID-RRPEVAAEINERREEGDLKENAGYDAAREMQDQE 59

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E R+ ++  ++  A         G              +  DK+ + I     A     L
Sbjct: 60  EARIKQISEVLANATTEREGIQDGVAAIGSVVHVYYNGDEEDKETFLIGTRAAASDNKDL 119

Query: 120 --VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
              S  SP+  A++G + G+     AP G+  +  I+ 
Sbjct: 120 ETYSEQSPLGAAILGAQEGETREYTAPNGKALSVTIIS 157


>gi|315606055|ref|ZP_07881086.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315312337|gb|EFU60423.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 159

 Score = 91.8 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 5/156 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D   +T   +D +  EL+ R + +R  I + I  AR  GDL EN  Y AA+  Q++NE
Sbjct: 1   MADTQWLTQAQYDLLANELKERIEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGL 119
            R+  L+ ++  AEV + +      +  G  V+     +G ++ + +       D+   +
Sbjct: 61  TRIQALQEMLEHAEVGE-TPADDGIVEPGMVVTA--LVAGREQTFLLGSRDAGGDLGIQV 117

Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
            S  +P+  A+IG + GD +S  AP G     EIL 
Sbjct: 118 FSAQAPLGAAVIGHKAGDKLSFEAPTGRMIDVEILD 153


>gi|19552211|ref|NP_600213.1| transcription elongation factor GreA [Corynebacterium glutamicum
           ATCC 13032]
 gi|62389876|ref|YP_225278.1| transcription elongation factor GreA [Corynebacterium glutamicum
           ATCC 13032]
 gi|21323753|dbj|BAB98379.1| Transcription elongation factor [Corynebacterium glutamicum ATCC
           13032]
 gi|41325211|emb|CAF19692.1| Transcription elongation factor [Corynebacterium glutamicum ATCC
           13032]
          Length = 174

 Score = 91.8 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 4/155 (2%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           DK  +T +   K+++EL       RP +   I+E R  GDL ENA Y AA+E+Q+  E R
Sbjct: 5   DKQYITPETKAKLEEELNALIA-HRPAVAAEINERREEGDLKENAGYDAAREMQDQEEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLV 120
           + ++  ++  +       + G            + +  DK+ + I     A  +      
Sbjct: 64  IKQISELLANSTTEREGIIEGVANVGSVVHVYYDGDENDKETFLIGTRAGASENPDLETY 123

Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           S  SP+  A++G + GD     AP G   +  ++ 
Sbjct: 124 SEQSPLGAAILGAQEGDTRQYTAPNGSVISVTVVS 158


>gi|88856089|ref|ZP_01130750.1| transcription elongation factor [marine actinobacterium PHSC20C1]
 gi|88814657|gb|EAR24518.1| transcription elongation factor [marine actinobacterium PHSC20C1]
          Length = 163

 Score = 91.8 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 72/154 (46%), Gaps = 8/154 (5%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + FD+   EL     E R  I K I  AR  GDL EN  Y AAKE Q   E R+  
Sbjct: 9   WLTQEAFDRRTAELEQLTGEARYDIAKKIEAAREEGDLKENGGYHAAKEEQGKIEARIRV 68

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQS-GLVSI 122
           L  ++  A V D+    G     G  V+        +++  ++G +E  AD     + S 
Sbjct: 69  LTELLRHAVVGDVQDADGLVE-PGILVTA---KIMGEESVFLLGSREIVADGSDLDVYSE 124

Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155
            SP+  A+ G ++G   +  AP G+  T EIL+V
Sbjct: 125 KSPLGLAINGLKVGSSATYTAPNGKDITVEILKV 158


>gi|229918722|ref|YP_002887368.1| GreA/GreB family elongation factor [Exiguobacterium sp. AT1b]
 gi|229470151|gb|ACQ71923.1| GreA/GreB family elongation factor [Exiguobacterium sp. AT1b]
          Length = 152

 Score = 91.8 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 3/153 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G  ++   L   ++ ER    + +  AR + D  E+  Y  A       E  +
Sbjct: 2   KPKLTETGHHQLTDRLVMLRR-ERTDARERLRTARKFCDFREDVTYTEAVRQYERIEADI 60

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            EL +++  A +++  ++  + + FG  V + E    + + Y+IV + EAD++ G +S++
Sbjct: 61  LELNHLLDDATIVE--SVQSEVVTFGNRVVIREVQQEETERYRIVSEAEADLERGSISVT 118

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           SP+ R L+G  +G  I V  PGG    E+L + 
Sbjct: 119 SPLGRRLMGATMGQTIQVETPGGTIQVEVLHIE 151


>gi|328950624|ref|YP_004367959.1| GreA/GreB family elongation factor [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450948|gb|AEB11849.1| GreA/GreB family elongation factor [Marinithermus hydrothermalis
           DSM 14884]
          Length = 156

 Score = 91.8 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 4/157 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  +I +T  G+++++ +L   + +      + + E     +  E++  + AK  +   E
Sbjct: 1   MAREIKLTKAGYERLKAQLEQ-EYQRLAEATRILQEQMESFEDYEDSGLEDAKREKARIE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-- 118
            R+  LE+ ++RA +++ S         G+ + L +  SG+    QIV   EA V     
Sbjct: 60  ARIDSLEDTLSRAVILEDSQGGQVVA-LGSRLVLQDAESGEGYEIQIVAPAEASVLEEPL 118

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S  SP+  AL+G+  G+ + V  P G + Y I+ V
Sbjct: 119 KISDESPVGSALLGRREGESVRVETPRGIREYRIISV 155


>gi|259506992|ref|ZP_05749892.1| transcription elongation factor GreA [Corynebacterium efficiens
           YS-314]
 gi|259165444|gb|EEW49998.1| transcription elongation factor GreA [Corynebacterium efficiens
           YS-314]
          Length = 174

 Score = 91.4 bits (225), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 4/156 (2%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            DK  +T +   K+++EL       RP +   I+E R  GDL ENA Y AA+E+Q+  E 
Sbjct: 4   ADKQYITPEMKAKLEEELNTLIA-RRPIVAAEINERREEGDLKENAGYDAAREMQDQEEA 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGL 119
           R+ ++  ++  A       + G            + +  DK+ + I     A  +     
Sbjct: 63  RIKQISEVLANATTEREGIVEGVANVGSVVHVYYDGDESDKETFLIGTRAAATDNPDLET 122

Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
            S  SP+  A++G   G+      P G   +  I+ 
Sbjct: 123 YSEQSPLGAAILGAHEGETREYTTPNGSAVSVTIVS 158


>gi|145295136|ref|YP_001137957.1| transcription elongation factor GreA [Corynebacterium glutamicum R]
 gi|140845056|dbj|BAF54055.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 174

 Score = 91.4 bits (225), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 4/155 (2%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           DK  +T +   K+++EL       RP +   I+E R  GDL ENA Y AA+E+Q+  E R
Sbjct: 5   DKQYITPETKAKLEEELNALIA-HRPAVAAEINERREEGDLKENAGYDAAREMQDQEEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQSGLV 120
           + ++  ++  +       + G            + +  DK+ + I     A  +      
Sbjct: 64  IKQISELLANSTTEREGIIEGVANVGSVVHVYYDGDENDKETFLIGTRAGASENPDLETY 123

Query: 121 SISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           S  SP+  A++G + GD     AP G   +  ++ 
Sbjct: 124 SEQSPLGAAILGAQEGDTRQYTAPNGSVISVTVVS 158


>gi|258654538|ref|YP_003203694.1| transcription elongation factor GreA [Nakamurella multipartita DSM
           44233]
 gi|258557763|gb|ACV80705.1| transcription elongation factor GreA [Nakamurella multipartita DSM
           44233]
          Length = 163

 Score = 91.4 bits (225), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 64/151 (42%), Gaps = 3/151 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T +  D+++ EL       RP I   I+  R  GDL EN  Y AA++ Q   E R+  
Sbjct: 8   WLTQEAHDRLKHELDELVL-HRPVIAAEINARREEGDLKENGGYHAARDEQAKQESRIRH 66

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISS 124
           L+ ++  A+V       G            + +  DK+ + +   +E       + S  S
Sbjct: 67  LQELLRDAQVGVAPADDGVVEPGMVVTIAYDGDDDDKETFLLGSREEGVHGSMPVYSPQS 126

Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           P+ +A++G   G+      P G  +   +++
Sbjct: 127 PLGQAILGASRGESREYTLPNGRTQKVSVVE 157


>gi|253998935|ref|YP_003050998.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4]
 gi|253985614|gb|ACT50471.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4]
          Length = 167

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 15/153 (9%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G   +QQ+++  ++E      +               +   A++  ++    + 
Sbjct: 28  NYVTPHGLYLLQQDMQALEKERATLSARK--------------DDPTAQQRLSMINRDLR 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE  +  A ++D +  S +++ FGA V + +   G ++ +QIVG+ EAD+    VS  S
Sbjct: 74  YLEARLETAIIVDPTQQSREQVLFGAHVHVEDDE-GQRQVFQIVGEDEADIAQNKVSWIS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+ARALIG + G++++   P G    EI+ + +
Sbjct: 133 PLARALIGHKRGEVVTWQRPAGNLELEIMDIHY 165


>gi|196232168|ref|ZP_03131023.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
 gi|196223890|gb|EDY18405.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
          Length = 169

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 15/153 (9%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T  G +++Q+EL                 A     L E  E + +++       RM
Sbjct: 29  RNRMTVDGAERLQKELAVL--------------ADQKAQLEETGEGEISRDELRRVTSRM 74

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AEVI IS   GD + FG  V++ +   G +  Y+IVG  E D+++G +S  
Sbjct: 75  QALSQRLADAEVIAISESRGDEVRFGMFVTIRDAG-GVEDEYRIVGVDEVDLEAGWISWL 133

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           SP+A+A++G+++GD++   AP GEK   I+ V 
Sbjct: 134 SPLAQAIVGRKIGDVVQFQAPAGEKKLHIVAVR 166


>gi|134093324|ref|YP_001098399.1| putative transcription elongation factor GreA/GreB [Herminiimonas
           arsenicoxydans]
 gi|133737227|emb|CAL60270.1| putative transcription elongation factor GreB [Herminiimonas
           arsenicoxydans]
          Length = 193

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 6/154 (3%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T  G+  +Q EL+    E +   ++   E       SE +  +  +E     E R+
Sbjct: 26  RNYITLAGYRHLQSELQRLMNEAQSAAVRE--ENPDNATFSEMSPERTVRE----IEQRI 79

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L+  +  AE++D    +G+   F       +  SG++++  IVG  E D  +G +S  
Sbjct: 80  HYLQARLEMAEIVDPGVHAGEEQIFFGANVTYQHESGEQQSVTIVGLDELDPANGRISWL 139

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+A++L+G   GD +++ +P G++  ++L V +
Sbjct: 140 SPVAQSLLGAYAGDEVTLESPAGKEVLKVLAVHY 173


>gi|331083573|ref|ZP_08332684.1| hypothetical protein HMPREF0992_01608 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403784|gb|EGG83336.1| hypothetical protein HMPREF0992_01608 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 167

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 78/150 (52%), Gaps = 1/150 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T     KIQ E+ +R+   R   I+A+ EARA GDLSEN EY AAK+ +N NE R+ 
Sbjct: 3   ERLTENDVKKIQAEIEYRKLTVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNKNESRIR 62

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE ++  AE++   + + +       + +  ++  + + Y++V     +     +SI S
Sbjct: 63  YLERMLKTAEIVSEDSKADEAG-MNNVIEVYFEDDDETETYKLVTSIRGNSLDNKISIES 121

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQ 154
           P+ +A++G   GD + V        Y +++
Sbjct: 122 PLGKAILGHREGDRVWVKINESAGYYIVIK 151


>gi|293189385|ref|ZP_06608108.1| transcription elongation factor GreA [Actinomyces odontolyticus
           F0309]
 gi|292821848|gb|EFF80784.1| transcription elongation factor GreA [Actinomyces odontolyticus
           F0309]
          Length = 159

 Score = 91.4 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 3/155 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M D   +T   +D +  EL+ R + +R  I + I  AR  GDL EN  Y AA+  Q++NE
Sbjct: 1   MADTQWLTQAQYDLLASELKERVEVKRVEIARLIDAARQEGDLRENGGYHAARNEQSMNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L+ ++  AEV +     G        V        ++K      D   D+   + 
Sbjct: 61  TRIQALQEMLEHAEVGETPADDGIVEP--GMVVTALVAGREQKFLLGSRDAGGDLGIQVF 118

Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
           S  +P+  A+IG + GD +S  AP G     EIL 
Sbjct: 119 SAQAPLGAAVIGHKAGDKLSFEAPTGRMIDVEILD 153


>gi|331087098|ref|ZP_08336171.1| hypothetical protein HMPREF0987_02474 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330409187|gb|EGG88638.1| hypothetical protein HMPREF0987_02474 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 167

 Score = 91.0 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 82/148 (55%), Gaps = 1/148 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T     K+++E+ +R+   R  +++ + EARA+GDLSEN EY AAK+ +N NE R+  L
Sbjct: 5   LTKNDIKKMREEIEYRKIVLRKELLEDVKEARAHGDLSENFEYHAAKKEKNKNESRIRYL 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
           E +I  A+++   +   +      TV L  +   + + +++V     +   GL+S  SPI
Sbjct: 65  ERMIKTAKIVSDESKEDEVG-LNNTVHLYFEEDDEVEVFKLVTTVRGNSLKGLISTESPI 123

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
            + ++GK+ GD + +   G    Y +++
Sbjct: 124 GKVILGKKAGDRVFIRVSGDAGYYVVIK 151


>gi|260587256|ref|ZP_05853169.1| transcription elongation factor GreA [Blautia hansenii DSM 20583]
 gi|260542451|gb|EEX23020.1| transcription elongation factor GreA [Blautia hansenii DSM 20583]
          Length = 169

 Score = 91.0 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 78/150 (52%), Gaps = 1/150 (0%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T     KIQ E+ +R+   R   I+A+ EARA GDLSEN EY AAK+ +N NE R+ 
Sbjct: 5   ERLTENDVKKIQAEIEYRKLTVRKEAIEAVKEARAQGDLSENFEYYAAKKDKNKNESRIR 64

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE ++  AE++   + + +       + +  ++  + + Y++V     +     +SI S
Sbjct: 65  YLERMLKTAEIVSEDSKADEAG-MNNVIEVYFEDDDETETYKLVTSIRGNSLDNKISIES 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQ 154
           P+ +A++G   GD + V        Y +++
Sbjct: 124 PLGKAILGHREGDRVWVKINESAGYYIVIK 153


>gi|226322649|ref|ZP_03798167.1| hypothetical protein COPCOM_00421 [Coprococcus comes ATCC 27758]
 gi|225208986|gb|EEG91340.1| hypothetical protein COPCOM_00421 [Coprococcus comes ATCC 27758]
          Length = 167

 Score = 90.6 bits (223), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/155 (29%), Positives = 81/155 (52%), Gaps = 4/155 (2%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T     KI++E++ R+   R   I+A+ EARA GDLSEN EY AAK+ +N NE R+
Sbjct: 2   REQLTESDVKKIEEEIQHRKHVIRKEAIEAVKEARAQGDLSENFEYHAAKKYKNQNESRI 61

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             LE ++  AE++  ++           V++      +++ Y++V     +     +S  
Sbjct: 62  RYLERMLKNAEIVSDTSEE-GVAGINNRVTVYFPEDDEEETYKLVTSIRGNSIHNYISTE 120

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYE--ILQVL 156
           SPI +A+ G + G+ + V     + +YE  I ++ 
Sbjct: 121 SPIGKAIFGHKAGETVKVKV-SDDYSYELVIRKIE 154


>gi|295110686|emb|CBL24639.1| Transcription elongation factor [Ruminococcus obeum A2-162]
          Length = 166

 Score = 90.6 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 81/150 (54%), Gaps = 3/150 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M +K  +T +  +KI++E+  R+   R   I+A+ EARA GDLSEN EY AAK+ +N NE
Sbjct: 1   MGEK--LTKRDVEKIEEEIEHRKLVIRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNE 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  LE ++  A V+D S+ S +       V +  +  G+ + Y++V     +     V
Sbjct: 59  SRIRYLERMLKTATVVDDSSKSDEVG-MDDIVEVEFEEDGEVEKYKLVTSIRGNSMENRV 117

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTY 150
           SI SPI +AL G  +GD + V        Y
Sbjct: 118 SIESPIGKALKGHRVGDRVLVKVNENVSYY 147


>gi|153004515|ref|YP_001378840.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
 gi|152028088|gb|ABS25856.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
          Length = 168

 Score = 90.6 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 69/151 (45%), Gaps = 16/151 (10%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            VT +G   ++QEL   +   R    +    ARA                    E R A 
Sbjct: 30  YVTPEGQAALRQELEALRDA-RAEAARLPEHARA--------------ARLAELERRAAL 74

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           +E  +    V+   +    ++ FG  V + +++      ++IVG  EAD + G+VS+ SP
Sbjct: 75  VEGTLAALTVLGPESALEGKVGFGTWVVVEDEDGRA-LTWRIVGPDEADPRRGMVSVHSP 133

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +ARAL+G E GD + V  P G + Y +++V 
Sbjct: 134 VARALLGHEAGDDVEVELPAGRRGYSVIEVR 164


>gi|255534798|ref|YP_003095169.1| Transcription elongation factor GreB [Flavobacteriaceae bacterium
           3519-10]
 gi|255340994|gb|ACU07107.1| Transcription elongation factor GreB [Flavobacteriaceae bacterium
           3519-10]
          Length = 183

 Score = 90.6 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 74/154 (48%), Gaps = 15/154 (9%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VT  G + +QQE      E+               D S   EY+ A         R+
Sbjct: 45  ENWVTPAGMEALQQERADLISEQ------------EKLDPSHEREYRIAFNHL---NARL 89

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A++ID + +S   + FGATV+    N+  ++ +Q+VG  EA++  G ++ +
Sbjct: 90  QLLNGRMASAKIIDTARLSQGEVHFGATVTFKNLNNNLRQTFQLVGVDEANISKGKLAFT 149

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +P+A+ALI  ++G+ +++        +EIL + +
Sbjct: 150 TPLAKALINSKVGEKVTLQLGDKTNIFEILSIGY 183


>gi|269219222|ref|ZP_06163076.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211369|gb|EEZ77709.1| transcription elongation factor GreA [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 161

 Score = 90.2 bits (222), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 79/157 (50%), Gaps = 6/157 (3%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             +  ++ + +++++ EL       R  I + I  AR  GDL EN  YQAA+E Q+  EG
Sbjct: 5   SKRAWLSPESYERLRAELEEMTTVRRAEIARKIEAARNEGDLRENGGYQAAREEQSKLEG 64

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV- 120
           R+AEL +++  A V +            A V +  K +G+++ + I   + +D     + 
Sbjct: 65  RIAELTHLLENATVSEPP----AATEVQAGVIVTAKIAGEEERFLIGSREASDHLDIEIY 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
             S+P+ +A++G + G+      P G K + EI+++ 
Sbjct: 121 PESAPLGKAILGLKEGESTKFATPTGRKISVEIVKIE 157


>gi|182412163|ref|YP_001817229.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
 gi|177839377|gb|ACB73629.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
          Length = 166

 Score = 90.2 bits (222), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 14/153 (9%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G +++ +EL   +  ERP +  A ++  A             K      + R 
Sbjct: 28  KRYLTEAGAERLHEELNRLRTVERPALAGAAADLDA-------------KRELRKLDERA 74

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            EL+ I+  AE+I         + FGA V++ E++ G    Y+IVG  E +  +G +S  
Sbjct: 75  RELQQILATAEIISSPAPDRSIVRFGAKVTVKEED-GTTSTYRIVGIDETEFYTGGISFQ 133

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           SP+A+AL+G  +GD I   +P G +  EI  + 
Sbjct: 134 SPLAQALLGASVGDRIQFQSPAGPRQLEIQLIE 166


>gi|262189677|ref|ZP_06048051.1| transcription elongation factor GreA [Vibrio cholerae CT 5369-93]
 gi|262034443|gb|EEY52809.1| transcription elongation factor GreA [Vibrio cholerae CT 5369-93]
          Length = 144

 Score = 90.2 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 56/126 (44%), Positives = 94/126 (74%), Gaps = 2/126 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T++G +K+ +E   R  + RP+I +AI+EAR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTARG-EKLLREELDRLLKLRPKITEAIAEARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VID++ M    ++ FGATV++++ NS ++K YQIVGD EAD++SG +
Sbjct: 60  QIRDIEYKLSVAQVIDVTKMENSGKVIFGATVTVIDVNSDEEKTYQIVGDDEADIKSGRI 119

Query: 121 SISSPI 126
           S++SP+
Sbjct: 120 SVNSPM 125


>gi|119025670|ref|YP_909515.1| transcription elongation factor GreA [Bifidobacterium adolescentis
           ATCC 15703]
 gi|154487515|ref|ZP_02028922.1| hypothetical protein BIFADO_01370 [Bifidobacterium adolescentis
           L2-32]
 gi|118765254|dbj|BAF39433.1| transcription elongation factor GreA [Bifidobacterium adolescentis
           ATCC 15703]
 gi|154084033|gb|EDN83078.1| hypothetical protein BIFADO_01370 [Bifidobacterium adolescentis
           L2-32]
          Length = 159

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++  I +T + +DK+++EL WR+ E R  I+  +S ARA GDLSEN  YQAA+E Q +
Sbjct: 1   MAEEKTILLTQEAYDKMKEELAWREGEYRDEILSKVSAARAEGDLSENGGYQAAREAQRV 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS- 117
           N+GR+ EL   +  A+++            G    +  + +G +  Y +     +     
Sbjct: 61  NQGRIDELTVKLRNAKILTAP----KAGEVGDGSLVTLEVNGREMVYVLGTRDLSIATDY 116

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
            ++S  SPI  A+ G   GD ++  AP G E +  I +
Sbjct: 117 SIISPESPIGAAINGAHAGDTVTYTAPNGREISVTIKE 154


>gi|171743230|ref|ZP_02919037.1| hypothetical protein BIFDEN_02358 [Bifidobacterium dentium ATCC
           27678]
 gi|283455792|ref|YP_003360356.1| transcription elongation factor GreA [Bifidobacterium dentium Bd1]
 gi|306823073|ref|ZP_07456449.1| possible transcription elongation factor GreA [Bifidobacterium
           dentium ATCC 27679]
 gi|309801121|ref|ZP_07695250.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Bifidobacterium dentium JCVIHMP022]
 gi|171278844|gb|EDT46505.1| hypothetical protein BIFDEN_02358 [Bifidobacterium dentium ATCC
           27678]
 gi|283102426|gb|ADB09532.1| Transcription elongation factor GreA [Bifidobacterium dentium Bd1]
 gi|304553705|gb|EFM41616.1| possible transcription elongation factor GreA [Bifidobacterium
           dentium ATCC 27679]
 gi|308222010|gb|EFO78293.1| prokaryotic transcription elongation factor, GreA/GreB, N-terminal
           domain protein [Bifidobacterium dentium JCVIHMP022]
          Length = 159

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 8/158 (5%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++  + +T + +DK+++EL WR+ E R  I+  +S ARA GDLSEN  YQAA+E Q +
Sbjct: 1   MAEEKTLLLTQEAYDKMKEELAWREGEYRDEILSKVSAARAEGDLSENGGYQAAREAQRV 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS- 117
           N+GR+ EL   +  A+++            G    +  + +G +  Y +     +     
Sbjct: 61  NQGRIDELTVKLRNAKILTAP----KEGEVGDGSVVTLELNGRELVYVLGTRDLSIATDY 116

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
            ++S  SPI  A+ G   GD +S  AP G E +  I  
Sbjct: 117 DIISPESPIGAAINGAHAGDTVSYTAPNGREISVTIKD 154


>gi|197122163|ref|YP_002134114.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
 gi|196172012|gb|ACG72985.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
          Length = 169

 Score = 89.5 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 16/151 (10%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            VT +G   +++ L   +                 GD +   +           + R+A 
Sbjct: 30  YVTPEGQAALREALARLR--------------ADRGDAARLPDA-ERPARLGELDARIAA 74

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  +    V+        ++ FG  V++ E++ G +  +++VG  EAD + GL+S  SP
Sbjct: 75  LDATLGALTVLGPEATPEGQVGFGTWVTVEEED-GRRVTWRLVGPDEADARRGLISAGSP 133

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +ARAL+G+  GD++ VN PGGE    ++ V 
Sbjct: 134 VARALLGRRAGDVVEVNRPGGEAELTVVAVR 164


>gi|145641637|ref|ZP_01797214.1| transcription elongation factor GreA [Haemophilus influenzae R3021]
 gi|145273684|gb|EDK13553.1| transcription elongation factor GreA [Haemophilus influenzae
           22.4-21]
          Length = 107

 Score = 89.5 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/102 (46%), Positives = 74/102 (72%), Gaps = 1/102 (0%)

Query: 58  LNEGRMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
             EGR+ E+E  +  A++ID++ M  + ++ FGATV LV  N+ ++  Y+IVGD EAD++
Sbjct: 6   FCEGRIQEIEGKLGNAQIIDVTKMPNNGKVIFGATVVLVNTNTDEEVTYRIVGDDEADIK 65

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SGL+S++SPIAR LIGKEL D +++  PGG   ++I++V +I
Sbjct: 66  SGLISVNSPIARGLIGKELDDTVNITTPGGVVEFDIIEVNYI 107


>gi|86158541|ref|YP_465326.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775052|gb|ABC81889.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 168

 Score = 89.1 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 16/151 (10%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            VT +G   +++ L   + E                D +   + + A       + R+A 
Sbjct: 30  YVTPEGQAALREALARLRAER--------------ADAARLPDAERAPR-LADLDARVAA 74

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  +    V+        ++ FG  V++ E++ G +  +++VG  EAD + GL+S  SP
Sbjct: 75  LDATLGALTVLGPEATPEGQVGFGTWVTVEEED-GRRVTWRLVGPDEADARRGLISAGSP 133

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +ARAL+G+  GD++ V+ PGGE    ++ V 
Sbjct: 134 VARALLGRRAGDVVEVHRPGGEAELTVVAVR 164


>gi|291295876|ref|YP_003507274.1| GreA/GreB family elongation factor [Meiothermus ruber DSM 1279]
 gi|290470835|gb|ADD28254.1| GreA/GreB family elongation factor [Meiothermus ruber DSM 1279]
          Length = 157

 Score = 88.7 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 78/159 (49%), Gaps = 4/159 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  ++ +T  G++++  EL   ++       + + E     D  +++  + AK  +   E
Sbjct: 1   MAREVKLTKSGYERLVAELEQ-ERARLQDATRILQELMESSDDYDDSGLEDAKREKARIE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV--QSG 118
            R+  L + ++RA++++       ++  GA VSL     G+    Q+V   EA V  +  
Sbjct: 60  ARIDSLTDTLSRAQIMEEEGTKVSQVTLGAIVSLR-SKEGEIMEVQVVAPAEASVLERPM 118

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +S  SP+ RAL+G+++G  + +  P G+K ++I  +  
Sbjct: 119 KISDESPMGRALLGQQVGAKVLLETPKGKKEFKIESIQH 157


>gi|212716148|ref|ZP_03324276.1| hypothetical protein BIFCAT_01063 [Bifidobacterium catenulatum DSM
           16992]
 gi|225351851|ref|ZP_03742874.1| hypothetical protein BIFPSEUDO_03453 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|212661515|gb|EEB22090.1| hypothetical protein BIFCAT_01063 [Bifidobacterium catenulatum DSM
           16992]
 gi|225157098|gb|EEG70437.1| hypothetical protein BIFPSEUDO_03453 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 159

 Score = 88.7 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 81/158 (51%), Gaps = 8/158 (5%)

Query: 1   MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++  + +T + +DK+++EL WR+ E R  I+  +S ARA GDLSEN  YQAA+E Q +
Sbjct: 1   MAEEKTLLLTQEAYDKMKEELAWREGEYRDEILSKVSAARAEGDLSENGGYQAAREAQRV 60

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS- 117
           N+GR+ EL   +  A+++            G    +    +G +  Y +     +     
Sbjct: 61  NQGRIEELTVKLRNAKILTAP----KAGEVGDGSLVTLDVNGREMVYVLGTRDLSIATDY 116

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
            ++S  SPI  A+ G   GD +S  AP G E +  I +
Sbjct: 117 SIISPESPIGAAINGAHEGDTVSYTAPNGREISVTIKE 154


>gi|225420455|ref|ZP_03762758.1| hypothetical protein CLOSTASPAR_06800 [Clostridium asparagiforme
           DSM 15981]
 gi|225040905|gb|EEG51151.1| hypothetical protein CLOSTASPAR_06800 [Clostridium asparagiforme
           DSM 15981]
          Length = 155

 Score = 88.7 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 2/142 (1%)

Query: 15  IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
           + +E+  R+   R   ++A+ EARA+GDLSEN EY+AAK+ +N NE R+  LE +I  A+
Sbjct: 1   MMEEIEHRKLVVRRECLEAVKEARAHGDLSENFEYKAAKQDKNRNESRIRYLERMIKTAK 60

Query: 75  VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134
           +I   + S +      TV +      + + Y+IV     +   GL+SI SP+ +AL+G +
Sbjct: 61  IISDKSSSDEVG-LNDTVEVYIPEDDETERYKIVTTVRGNSLKGLISIDSPLGKALLGHK 119

Query: 135 LGDIISVNAPGG-EKTYEILQV 155
            G+ + V          EI  +
Sbjct: 120 AGETVYVKVDERFGYEVEIRSI 141


>gi|227504093|ref|ZP_03934142.1| transcription elongation factor GreA [Corynebacterium striatum ATCC
           6940]
 gi|227199327|gb|EEI79375.1| transcription elongation factor GreA [Corynebacterium striatum ATCC
           6940]
          Length = 173

 Score = 88.3 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 65/151 (43%), Gaps = 5/151 (3%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +   K++ EL+      RP +   I+E R  GDL ENA Y AA+E+Q+ 
Sbjct: 1   MAEQQKQYITPETKAKLEAELQALID-HRPVVAAEINERREEGDLKENAGYDAAREMQDQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ++  ++  A     +   G              +  DK+ + I     A     
Sbjct: 60  EEARIKQISEVLANATTERTAIQEGVAAIGSVVHVYYNGDKDDKETFLIGTRAAASDNKD 119

Query: 119 L--VSISSPIARALIGKELGDIISVNAPGGE 147
           L   S  SP+  ALIG   G+     AP G+
Sbjct: 120 LETYSEQSPLGAALIGAHEGETREYTAPNGK 150


>gi|330811840|ref|YP_004356302.1| GreA-GreB family transcriptional regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379948|gb|AEA71298.1| Putative transcription factor, GreA-GreB family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 163

 Score = 88.3 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 64/154 (41%), Gaps = 18/154 (11%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
                VT  G  ++Q  +   Q     +  +                  A K+     E 
Sbjct: 25  AQPNYVTPTGLAQLQARVAELQALHAQQASR---------------GELADKQRIADLER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V+  ++    R   G  V+ V++    ++  Q+VG+ +AD  SGL++
Sbjct: 70  DLRYFTQRLQSAQVVAPTSSDQVR--IGHWVTFVDEQ-DHEQRVQLVGEDQADAASGLIN 126

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+ RAL+G ++GD ++   P G    E++ +
Sbjct: 127 WGSPLGRALLGAKVGDEVTWERPLGNLAIEVVAI 160


>gi|13357864|ref|NP_078138.1| transcription elongation factor [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|170762258|ref|YP_001752386.1| transcription elongation factor GreA [Ureaplasma parvum serovar 3
           str. ATCC 27815]
 gi|171920165|ref|ZP_02691337.2| transcription elongation factor GreA [Ureaplasma parvum serovar 1
           str. ATCC 27813]
 gi|183508821|ref|ZP_02958274.1| transcription elongation factor GreA [Ureaplasma parvum serovar 14
           str. ATCC 33697]
 gi|186701835|ref|ZP_02971503.1| transcription elongation factor GreA [Ureaplasma parvum serovar 6
           str. ATCC 27818]
 gi|11132421|sp|Q9PQI7|GREA_UREPA RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|189042253|sp|B1AIU2|GREA_UREP2 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|11279752|pir||G82906 transcription elongation factor UU304 [imported] - Ureaplasma
           urealyticum
 gi|6899280|gb|AAF30713.1|AE002128_1 transcription elongation factor [Ureaplasma parvum serovar 3 str.
           ATCC 700970]
 gi|168827835|gb|ACA33097.1| transcription elongation factor GreA [Ureaplasma parvum serovar 3
           str. ATCC 27815]
 gi|171902538|gb|EDT48827.1| transcription elongation factor GreA [Ureaplasma parvum serovar 1
           str. ATCC 27813]
 gi|182675786|gb|EDT87691.1| transcription elongation factor GreA [Ureaplasma parvum serovar 14
           str. ATCC 33697]
 gi|186701123|gb|EDU19405.1| transcription elongation factor GreA [Ureaplasma parvum serovar 6
           str. ATCC 27818]
          Length = 156

 Score = 88.3 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 72/132 (54%)

Query: 24  QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83
             + P I K + +AR  GDLSENA+Y AAK  Q   + R  E+E I+   E+I+    S 
Sbjct: 23  DVKWPAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVLRST 82

Query: 84  DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
           D ++ G+T+ +       ++   +VG  ++D  +  +SI +P+ +AL+ ++ G  ++V+ 
Sbjct: 83  DEVSIGSTIEIYNYQKDCEEVITLVGSMDSDPFANKISIDTPLGKALVKQKKGTEVTVHT 142

Query: 144 PGGEKTYEILQV 155
                  +I+++
Sbjct: 143 LASPYKVKIIKI 154


>gi|319949700|ref|ZP_08023731.1| transcription elongation factor GreA [Dietzia cinnamea P4]
 gi|319436630|gb|EFV91719.1| transcription elongation factor GreA [Dietzia cinnamea P4]
          Length = 165

 Score = 88.3 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 68/145 (46%), Gaps = 3/145 (2%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T   +D++  E        RP I   I+E R  GDL ENA Y AA+E Q   E R+  
Sbjct: 9   WLTQDSYDRLMAEKEALIAN-RPVIAAEINERREEGDLKENAGYHAAREQQGQEEARIRT 67

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL--VSIS 123
           +++++  A+V +  T SG  +      +    N   K+ + I    E   +  L   S  
Sbjct: 68  IDDLLANAQVGETPTESGVALIGSVVRAYYNGNEDTKETFLIGTRGEGSGKDDLEIYSPD 127

Query: 124 SPIARALIGKELGDIISVNAPGGEK 148
           SP+ +A++G + G+     AP G+K
Sbjct: 128 SPLGKAVLGAKNGETREYTAPNGKK 152


>gi|284036025|ref|YP_003385955.1| GreA/GreB family elongation factor [Spirosoma linguale DSM 74]
 gi|283815318|gb|ADB37156.1| GreA/GreB family elongation factor [Spirosoma linguale DSM 74]
          Length = 171

 Score = 88.3 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 14/154 (9%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT +G   ++ E    ++E           A A   L++  E         L  G++A
Sbjct: 29  NYVTPRGLAMLRDEFEKLEKE----------HALAQTQLTDENERT---RQLALLNGQIA 75

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD-KKNYQIVGDQEADVQSGLVSIS 123
            L   I  A+V+++     D + FGATV+L  +++G   +   IVG  EAD   G ++  
Sbjct: 76  ALNQRIATAKVVNMQDHPLDEVRFGATVTLSSQSTGKADQQLTIVGVDEADAIHGRIAFP 135

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +PIAR L+GK++GD I++  P GE   EI  + +
Sbjct: 136 APIARLLLGKKVGDFITLRTPRGENALEITSIYY 169


>gi|294786772|ref|ZP_06752026.1| transcription elongation factor GreA [Parascardovia denticolens
           F0305]
 gi|315226395|ref|ZP_07868183.1| transcription elongation factor GreA [Parascardovia denticolens DSM
           10105]
 gi|294485605|gb|EFG33239.1| transcription elongation factor GreA [Parascardovia denticolens
           F0305]
 gi|315120527|gb|EFT83659.1| transcription elongation factor GreA [Parascardovia denticolens DSM
           10105]
          Length = 158

 Score = 87.9 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 6/154 (3%)

Query: 3   DKIPV-TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +K+ + T + +DK+++EL +R+ + R  I   I+ ARA GDLSEN  YQAA+E Q  NEG
Sbjct: 4   EKVYLLTQEAYDKLKEELTYREGDLREEIKAKIAAARAEGDLSENGGYQAAREEQGKNEG 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLV 120
           R+ EL   +  ++++        ++  G+ V L  + +G++  Y +     A      ++
Sbjct: 64  RIQELTVKLRDSQILKAPKA--GKVGPGSLVVL--EIAGNEMTYVLGSHDLAVATDFDII 119

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           S  SPI  A+ GK+ GD ++  AP G +   I++
Sbjct: 120 SPESPIGAAINGKKKGDTVTYAAPNGREITVIIK 153


>gi|320334564|ref|YP_004171275.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
           21211]
 gi|319755853|gb|ADV67610.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
           21211]
          Length = 160

 Score = 87.9 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 4/160 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T +G++++++ L   +++ R     +++         E+   QAA+      +
Sbjct: 1   MTQKIQMTREGYERLERALEH-ERQRRDEATASMAAVLDDAIDLEDRSLQAAQHDFAGMD 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA---DVQS 117
            R+ ELE+ + RAE++D    +   +  G+ V L +         Q+V   E    D   
Sbjct: 60  ARIMELEDALVRAEIVDTVDDADGHVRIGSVVDLHDNTQNRDVRVQLVSAVETTLLDEGI 119

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             VS  SP+ +AL+G++ GD  +V+    +K Y +  V  
Sbjct: 120 THVSDDSPVGKALLGRQRGDTFTVDLGDRQKDYTVQNVEH 159


>gi|94985913|ref|YP_605277.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM
           11300]
 gi|94556194|gb|ABF46108.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM
           11300]
          Length = 158

 Score = 87.9 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 10/161 (6%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS---ENAEYQAAKELQN 57
           M ++IP+T++G+ ++Q+ L     +ER R+  A +   A  D +   E+  +QAA+    
Sbjct: 1   MAEEIPMTAEGYRRLQETLE----KERQRLEDATTSMAATLDDAMDLEDRSFQAAQYDLP 56

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
             E R+ ELE+++ RA +++        +A G+ V L ++    +   Q+V   E D  +
Sbjct: 57  TMEARILELEDVLARAVIVEEPQARDGGVALGSVVVLRDEQHDRELRVQLVSAVEVDALA 116

Query: 118 G---LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
                VS  SP+ +AL+G+  G+   V+       Y +  +
Sbjct: 117 EGATQVSEDSPVGKALLGRRAGESFEVDLGSSRARYTVKSI 157


>gi|320335054|ref|YP_004171765.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
           21211]
 gi|319756343|gb|ADV68100.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
           21211]
          Length = 160

 Score = 87.5 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 5/161 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   I +T +GF+++Q+ L   ++E      + + E       +E+   + AK  +   E
Sbjct: 1   MARDIKLTREGFERLQRTLDH-ERERLEEATRILQEQMEASADNEDTGLEDAKREKMSIE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-- 118
            R+ +LE+ + RA +I+  +     +A GA V L  + +      QIV   EA V  G  
Sbjct: 60  ARIDDLEDTLARATLIEDHSEDAGHVALGAIVVLHNEATKKDMRVQIVSAPEASVLGGSL 119

Query: 119 -LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
             +S  SP+   L+G++ G+   VN   G++  Y++  V +
Sbjct: 120 PKISDDSPVGTQLLGRKTGESFVVNLENGKQVKYKVKNVEY 160


>gi|255324383|ref|ZP_05365500.1| transcription elongation factor GreA [Corynebacterium
           tuberculostearicum SK141]
 gi|311740763|ref|ZP_07714590.1| transcription elongation factor GreA [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255298289|gb|EET77589.1| transcription elongation factor GreA [Corynebacterium
           tuberculostearicum SK141]
 gi|311304283|gb|EFQ80359.1| transcription elongation factor GreA [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 173

 Score = 87.5 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 6/159 (3%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +   K++ EL+      RP +   I+E R  GDL ENA Y AA+E+Q+ 
Sbjct: 1   MAEQQKQYITPETKAKLEAELQELID-HRPVVAAEINERREEGDLKENAGYDAAREMQDQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ++  ++  A     +   G              +  DK+ + I     A     
Sbjct: 60  EEARIKQISEVLANATTERGAVQEGVAHTGSVVHVYYNGDKDDKETFLIGTRAAASDNKD 119

Query: 119 L--VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           L   S  SP+  A++G + G+     AP G   +  I  
Sbjct: 120 LETYSEQSPLGAAILGAQEGETREYTAPNGKTISVTIES 158


>gi|298206901|ref|YP_003715080.1| transcription elongation factor, putative [Croceibacter atlanticus
           HTCC2559]
 gi|83849535|gb|EAP87403.1| transcription elongation factor, putative [Croceibacter atlanticus
           HTCC2559]
          Length = 166

 Score = 87.5 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 15/153 (9%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G  +++ EL+   +E+    IK   E R                   +   +M 
Sbjct: 29  NYVTPNGLQELKTELKQLAEEQANLGIKDDQERR---------------RAIAVITAKMN 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +L+  +  A ++D      D + FGATV L  K S   + +QIVG  EA+++   ++  +
Sbjct: 74  QLKERLASARLLDPKDQPKDEVRFGATVKLKNKTSNLVQEFQIVGVDEANIKKQKIAFVA 133

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+  A+IG ++ + +S N  G  +  EIL + +
Sbjct: 134 PLVSAIIGAKVNENVSFNLGGEVRELEILSITY 166


>gi|77461094|ref|YP_350601.1| GreA/GreB family elongation factor [Pseudomonas fluorescens Pf0-1]
 gi|77385097|gb|ABA76610.1| putative transcription elongation factor [Pseudomonas fluorescens
           Pf0-1]
          Length = 164

 Score = 87.5 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
                VT +G  ++Q +L   Q     +  K                 QA K+     E 
Sbjct: 25  TQPNYVTPQGLTQLQTKLAELQSLHAEQSAK---------------GEQADKQRLADLER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V   +  S D++  G+ V+  ++  G ++  Q+VG+ +AD  +GL++
Sbjct: 70  DLRYFNQRVASAQVA-PAPTSNDKVQIGSWVTYADE-HGTERRVQLVGEDQADAANGLIN 127

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +SP+ RAL+G  L D +    P G++  E++++ 
Sbjct: 128 WASPLGRALLGARLNDEVLWQRPAGDQVIEVIRIE 162


>gi|15618651|ref|NP_224937.1| fused transcript cleavage factor/uncharacterized domain-containing
           protein [Chlamydophila pneumoniae CWL029]
 gi|15836273|ref|NP_300797.1| fused transcript cleavage factor/uncharacterized domain-containing
           protein [Chlamydophila pneumoniae J138]
 gi|16752300|ref|NP_444557.1| fused transcript cleavage factor/uncharacterized domain-containing
           protein [Chlamydophila pneumoniae AR39]
 gi|33242100|ref|NP_877041.1| fused transcript cleavage factor/uncharacterized domain-containing
           protein [Chlamydophila pneumoniae TW-183]
 gi|7531133|sp|Q9Z7G4|GREA_CHLPN RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|4377048|gb|AAD18880.1| Transcription Elongation Factor [Chlamydophila pneumoniae CWL029]
 gi|7188943|gb|AAF37901.1| transcription elongation protein, GreA/GreB family [Chlamydophila
           pneumoniae AR39]
 gi|8979113|dbj|BAA98948.1| transcription elongation factor [Chlamydophila pneumoniae J138]
 gi|33236610|gb|AAP98698.1| GreA [Chlamydophila pneumoniae TW-183]
          Length = 722

 Score = 87.5 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 83/151 (54%), Gaps = 5/151 (3%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           TS+ F +++ +L+    +E     K I +AR+ GDL EN+EY+ A E +   +  +  L 
Sbjct: 571 TSESFSRMKAKLQSLVGKEMVDNAKEIEDARSLGDLRENSEYKFALEKRARLQEEIRVLS 630

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             I RA ++    +  D++  G  V+L   ++G+   Y I+G  +AD  S ++S+ S +A
Sbjct: 631 EEINRARILTKDLVFTDKVGVGCKVTLK-GDAGEVVEYTILGPWDADPDSCILSLQSKLA 689

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + ++GK+L D++ +      K Y+I ++  I
Sbjct: 690 QNMLGKKLNDVVILQ----GKEYKISRIQSI 716


>gi|38233521|ref|NP_939288.1| transcription elongation factor GreA [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38199781|emb|CAE49444.1| transcription elongation factor [Corynebacterium diphtheriae]
          Length = 173

 Score = 87.5 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 6/159 (3%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M D  K  +T +   K+++EL       RP +   I+E R  GDL ENA Y AA+E+Q+ 
Sbjct: 1   MADNQKQYITPETKAKLEEELNALIA-HRPVVAAEINERREEGDLKENAGYDAAREMQDQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ++  I+  +       + G              +  DK+ + I     A     
Sbjct: 60  EEARIKQISEILANSTTERAGIVEGVAHIGSVVHVYYNGDKNDKETFLIGTRAAASDNKD 119

Query: 119 L--VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           L   S  SP+  A++G + G+    +AP G   +  I+ 
Sbjct: 120 LETYSEQSPLGAAVVGAQEGETRQYSAPNGNTISVTIVS 158


>gi|227548191|ref|ZP_03978240.1| transcription elongation factor GreA [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227079752|gb|EEI17715.1| transcription elongation factor GreA [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 174

 Score = 87.5 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +   K++ EL+      RP I   I+E R  GDL ENA Y AA+E Q+ 
Sbjct: 1   MAETQKQYITPEMKAKLENELQALIDN-RPVIAAEINERREEGDLKENAGYDAAREQQDQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA---DV 115
            E R+ ++  I+  A   + S +       G+ V +        K   ++G + A   + 
Sbjct: 60  EEARIKQISEILANA-TTERSGVIEGVAQVGSVVHVFYNGDESDKETFLIGTRAASTGNK 118

Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
                S +SP+  A++G   G+  + +AP G E T  I+ 
Sbjct: 119 DLETYSENSPLGAAVVGASEGETRTYSAPNGREITVTIVS 158


>gi|300858139|ref|YP_003783122.1| transcription elongation factor [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300685593|gb|ADK28515.1| Transcription elongation factor [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302205860|gb|ADL10202.1| transcription elongation factor GreA [Corynebacterium
           pseudotuberculosis C231]
 gi|302330418|gb|ADL20612.1| transcription elongation factor GreA [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276095|gb|ADO25994.1| transcription elongation factor GreA [Corynebacterium
           pseudotuberculosis I19]
          Length = 173

 Score = 87.1 bits (214), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 6/158 (3%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +   K+++EL       RP +   I+E R  GDL ENA Y AA+E+Q+ 
Sbjct: 1   MAENQKQYITPETKAKLEEELNALIA-HRPEVAAEINERREEGDLKENAGYDAAREMQDQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ++  I+  +    +  + G              +  DK+ + I     A     
Sbjct: 60  EEARIKQISEILANSTTERVGIVEGVAHIGSVVHVYYNGDKNDKETFLIGTRAAASDNKD 119

Query: 119 L--VSISSPIARALIGKELGDIISVNAPGG-EKTYEIL 153
           L   S  SP+  A+IG + G+     AP G   T  ++
Sbjct: 120 LETFSEQSPLGAAVIGAKEGETREYTAPNGKTITVTVV 157


>gi|269302530|gb|ACZ32630.1| transcription elongation factor GreA [Chlamydophila pneumoniae
           LPCoLN]
          Length = 722

 Score = 87.1 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 83/151 (54%), Gaps = 5/151 (3%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           TS+ F +++ +L+    +E     K I +AR+ GDL EN+EY+ A E +   +  +  L 
Sbjct: 571 TSESFSRMKAKLQSLVGKEMVDNAKEIEDARSLGDLRENSEYKFALEKRARLQEEIRVLS 630

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             I RA ++    +  D++  G  V+L   ++G+   Y I+G  +AD  S ++S+ S +A
Sbjct: 631 EEINRARILTKDLVFTDKVGVGCKVTLK-GDAGEVVEYTILGPWDADPDSCILSLQSKLA 689

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + ++GK+L D++ +      K Y+I ++  I
Sbjct: 690 QNMLGKKLNDVVILQ----GKEYKISRIQSI 716


>gi|15807365|ref|NP_296096.1| transcription elongation factor [Deinococcus radiodurans R1]
 gi|6460189|gb|AAF11920.1|AE002068_3 transcription elongation factor [Deinococcus radiodurans R1]
          Length = 183

 Score = 87.1 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 78/163 (47%), Gaps = 11/163 (6%)

Query: 1   MVDKIPVTSKGFDKIQQ--ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M   +P+T +G  ++Q   E    ++EE  R+++   EA       E+ +  AA+E    
Sbjct: 24  MTQPLPLTPEGLSRLQAALEREQARREEARRVVQEQMEANEN----ESLDLAAAQETLGA 79

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ELE+ + RA V+     +  R A G+ V+L+    G +    +V   EA    G
Sbjct: 80  VEARIEELEDQLARAVVLAPGAGNDGRAAVGSRVTLLNIGLGRELPLHLVSAAEAAAGPG 139

Query: 119 -----LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
                LVS  SP+ RAL+G+  G+  +V+    +  Y +L V 
Sbjct: 140 TSGVALVSTESPVGRALLGRRAGEEFTVDLGRTQAQYRVLMVE 182


>gi|15834629|ref|NP_296388.1| fused transcript cleavage factor/uncharacterized domain-containing
           protein [Chlamydia muridarum Nigg]
 gi|270284795|ref|ZP_06194189.1| fused transcript cleavage factor/uncharacterized domain-containing
           protein [Chlamydia muridarum Nigg]
 gi|270288825|ref|ZP_06195127.1| fused transcript cleavage factor/uncharacterized domain-containing
           protein [Chlamydia muridarum Weiss]
 gi|301336175|ref|ZP_07224377.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
           muridarum MopnTet14]
 gi|14194799|sp|Q9PLU1|GREA_CHLMU RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|7190045|gb|AAF38898.1| transcription elongation protein, GreA/GreB family [Chlamydia
           muridarum Nigg]
          Length = 714

 Score = 87.1 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 80/151 (52%), Gaps = 5/151 (3%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           TS+ F +++ +L+    +E     K I +ARA GDL EN+EY+ A E +   +  +  L 
Sbjct: 567 TSESFTRMKAKLQSLIGKEMVDNAKEIEDARALGDLRENSEYKFALERRARLQEEIRVLS 626

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             I RA+++    +  + +  G  V L ++    +  Y I+G  +A+ +  ++S+ S +A
Sbjct: 627 EEINRAKILTKDAVFTNSVGVGCKVVLEDEQGE-EDCYTILGPWDANPEEKILSLKSKLA 685

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + ++GK +G+ +      G+K  +I Q+  I
Sbjct: 686 QEMVGKTVGESVLFQ---GKKH-KIKQISSI 712


>gi|325283338|ref|YP_004255879.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP]
 gi|324315147|gb|ADY26262.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP]
          Length = 165

 Score = 86.8 bits (213), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 79/161 (49%), Gaps = 7/161 (4%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             +I +T +G++++++ L   +QE      + + E       SE+   + AK  +   E 
Sbjct: 7   TKQIKLTKEGYERLEKALAQ-EQERLTEATRIVQEQMENSTDSEDTGLEDAKREKRQVEA 65

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--- 118
           R+ ELE+ + RA VI+        +  GATV L  + +  +   ++V   EA V+ G   
Sbjct: 66  RIEELEDTLARATVIE-GGADDGAVNLGATVVLSNETAKKEMTVKVVSAAEASVRGGDKT 124

Query: 119 -LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
             +S  SP+ R L+G+  GD   VN  GG++  Y++  V +
Sbjct: 125 PRISDDSPVGRELMGRREGDAFVVNLEGGKQVKYKVKSVSY 165


>gi|220916942|ref|YP_002492246.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954796|gb|ACL65180.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 168

 Score = 86.8 bits (213), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 16/151 (10%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            VT +G   +++ L   + E                D +   + + A       + R+A 
Sbjct: 30  YVTPEGQAALREALARLRAER--------------ADAARLPDAERAPR-LADLDARIAA 74

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  +    V+        ++ FG  V++ E++ G +  +++VG  EAD + GL+S  SP
Sbjct: 75  LDATLGALTVLGPEATPEGQVGFGTWVTVEEED-GRRVTWRLVGPDEADARRGLISAGSP 133

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +ARAL+G+  G+++ V+ PGGE    ++ V 
Sbjct: 134 VARALLGRRAGEVVEVHRPGGEAELTVVAVR 164


>gi|227832751|ref|YP_002834458.1| Transcription elongation factor [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182759|ref|ZP_06042180.1| transcription elongation factor GreA [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227453767|gb|ACP32520.1| Transcription elongation factor [Corynebacterium aurimucosum ATCC
           700975]
          Length = 173

 Score = 86.8 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 6/159 (3%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +   K++ EL+      RP +   I+E R  GDL ENA Y AA+E+Q+ 
Sbjct: 1   MAEQQKQYITPETKAKLEAELQALID-HRPVVAAEINERREEGDLKENAGYDAAREMQDQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ++  ++  +     +   G              +  D++ + I     A     
Sbjct: 60  EEARIKQISEVLANSTTERTAVQEGVAHIGSVVHVYYNGDEEDRETFLIGTRAAASDNKD 119

Query: 119 L--VSISSPIARALIGKELGDIISVNAPGGEK-TYEILQ 154
           L   S  SP+  AL+G   G+     AP G+  +  ++ 
Sbjct: 120 LETYSEQSPLGAALLGAAEGETREYTAPNGKTLSVTVVS 158


>gi|330444026|ref|YP_004377012.1| transcription elongation factor greA [Chlamydophila pecorum E58]
 gi|328807136|gb|AEB41309.1| Transcription elongation factor greA [Chlamydophila pecorum E58]
          Length = 721

 Score = 86.4 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 83/156 (53%), Gaps = 6/156 (3%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           D   VTS+ F +++++L+    +E     + I +ARA GDL EN+EY+ A E +   +  
Sbjct: 569 DVFWVTSQSFSRMKEKLQSLVGKEMVDNAREIEDARALGDLRENSEYKFALERRARLQEE 628

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  L   I +A+++  + +   ++  G  V+L +     +  Y ++G  +AD +  ++S+
Sbjct: 629 IRVLSEEINKAKILTKADVHTHKVGVGCRVTLEDAQGSIE--YTLLGSWDADSEKNILSL 686

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            S +A+ L+GK + + + +      + Y I +++ I
Sbjct: 687 QSKLAQMLLGKNIDERVQLQ----GREYRIAKIVSI 718


>gi|225022977|ref|ZP_03712169.1| hypothetical protein CORMATOL_03023 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305681896|ref|ZP_07404700.1| transcription elongation factor GreA [Corynebacterium matruchotii
           ATCC 14266]
 gi|224944200|gb|EEG25409.1| hypothetical protein CORMATOL_03023 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305658369|gb|EFM47872.1| transcription elongation factor GreA [Corynebacterium matruchotii
           ATCC 14266]
          Length = 175

 Score = 86.0 bits (211), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 6/156 (3%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            K  +T +   K+++EL       RP +   I+E R  GDL ENA Y AA+E+Q+  E R
Sbjct: 5   QKQYITPESKAKLEEELNALIA-HRPVVAAEINERREEGDLKENAGYDAAREMQDQEEAR 63

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATV-SLVEKNSGDKKNYQIVGDQEADVQSGL-- 119
           +  +  I+  +   + S +       G+ V         +K+ + I     A     L  
Sbjct: 64  IKHISEILANS-TTERSGIIEGVAHVGSVVHVYYNGKPENKETFLIGTRAAASDNKDLET 122

Query: 120 VSISSPIARALIGKELGDIISVNAPGGE-KTYEILQ 154
            S  SP+  A++G   G+     AP G+  +  ++ 
Sbjct: 123 YSEQSPLGAAILGAHEGETREYTAPNGKVISVTVVS 158


>gi|281356514|ref|ZP_06243006.1| GreA/GreB family elongation factor [Victivallis vadensis ATCC
           BAA-548]
 gi|281317206|gb|EFB01228.1| GreA/GreB family elongation factor [Victivallis vadensis ATCC
           BAA-548]
          Length = 698

 Score = 86.0 bits (211), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 6/155 (3%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +    + K   ++  EL      + P   +A+  ARA+GD  EN+E+ AAKE +N    R
Sbjct: 537 EPNYTSVKSHKRLMAELDDIINVQVPENREALKVARAHGDFRENSEFDAAKERRNFLSRR 596

Query: 63  MAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
             ELE  +TR + I   S    D    G+ + L ++N   +  YQ++G  + D +   +S
Sbjct: 597 RGELERELTRIQPISLKSVRVEDSAVIGSEIELQDENGEKEV-YQLLGAWDGDPERRFLS 655

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             + + +A++ +++G   S     G + Y+++ V 
Sbjct: 656 YRTRLGKAVLNRKVGSEFS----DGSRQYKLIAVR 686


>gi|312963140|ref|ZP_07777625.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
 gi|311282651|gb|EFQ61247.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
          Length = 165

 Score = 86.0 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 17/152 (11%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T++G  ++Q ++   Q E      K                 +A K+ Q   E  + 
Sbjct: 28  NRLTAQGLTQLQAKVAQLQLEYSAESAK---------------GEKADKQRQADLERDLR 72

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+V+     S D++  G+ V+   +     +  Q+VG+ +AD  +GL++  S
Sbjct: 73  YFNQRVQSAQVV-PPATSCDKVQIGSWVTFANEQDEQ-QRVQLVGEDQADANAGLINWGS 130

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+ RAL+G ++GD +    P G++  E+L+V 
Sbjct: 131 PLGRALLGAQVGDEVLWKRPVGDQLIEVLRVE 162


>gi|170723669|ref|YP_001751357.1| GreA/GreB family elongation factor [Pseudomonas putida W619]
 gi|169761672|gb|ACA74988.1| GreA/GreB family elongation factor [Pseudomonas putida W619]
          Length = 165

 Score = 86.0 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/151 (22%), Positives = 65/151 (43%), Gaps = 17/151 (11%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT+ G  ++QQ +              +      GD          K+     E  + 
Sbjct: 28  NYVTTNGLRQLQQRVADLNALR-----AELQAQGEQGD----------KQRLADAERDLR 72

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+V+  +  S  ++  G+ V   ++  G ++  Q+VG+ EAD   GL++  S
Sbjct: 73  YFSARVQSAQVV-PAATSNSKVQIGSRVRFADEQ-GQEQTVQLVGEDEADASRGLINWGS 130

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+ RAL+G   GD ++   P G++  E++ +
Sbjct: 131 PLGRALLGAGPGDEVTWRRPAGDQVIEVMDI 161


>gi|227501557|ref|ZP_03931606.1| transcription elongation factor GreA [Corynebacterium accolens ATCC
           49725]
 gi|306835715|ref|ZP_07468721.1| transcription elongation factor GreA [Corynebacterium accolens ATCC
           49726]
 gi|227077582|gb|EEI15545.1| transcription elongation factor GreA [Corynebacterium accolens ATCC
           49725]
 gi|304568433|gb|EFM43992.1| transcription elongation factor GreA [Corynebacterium accolens ATCC
           49726]
          Length = 173

 Score = 86.0 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 6/159 (3%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +   K++ EL+      RP +   I+E R  GDL ENA Y AA+E+Q+ 
Sbjct: 1   MAEQQKQYITPETKAKLETELQELID-HRPEVAAEINERREEGDLKENAGYDAAREMQDQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ++  ++  +     +   G              N  DK+ + I     A     
Sbjct: 60  EEARIKQISELLANSTTERGTMQEGVAYTGSVVHVYYNGNKDDKETFLIGTRAAATDNKD 119

Query: 119 L--VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           L   S  SP+  A+IG + G+    +AP G   +  I  
Sbjct: 120 LETYSEQSPLGAAIIGAQEGETREYSAPNGKTISVTIES 158


>gi|260576470|ref|ZP_05844460.1| GreA/GreB family elongation factor [Rhodobacter sp. SW2]
 gi|259021353|gb|EEW24659.1| GreA/GreB family elongation factor [Rhodobacter sp. SW2]
          Length = 167

 Score = 85.2 bits (209), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 66/158 (41%), Gaps = 26/158 (16%)

Query: 5   IPVTSKGFDKIQQELRWRQQEER-----PRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
             VT +G   +Q  L   Q         P  +  + EA A  D                 
Sbjct: 26  NYVTPRGLALLQTRLAEAQARLAALRARPERLDKLPEAAAERD----------------- 68

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
              +  LE  +  A  +D S+     +AFGA V +     G ++ +QI G+ EAD     
Sbjct: 69  ---IRYLEARLRSAIPVDPSSQPAGEVAFGARVEVA-LADGSRQVWQITGEDEADATQNR 124

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           ++  SP+ARAL+G E+GD++    P G    E+L + +
Sbjct: 125 IAPQSPLARALLGAEVGDLVIWRKPSGPVELEVLAIAY 162


>gi|152981797|ref|YP_001351733.1| transcription elongation factor GreB [Janthinobacterium sp.
           Marseille]
 gi|151281874|gb|ABR90284.1| transcription elongation factor GreB [Janthinobacterium sp.
           Marseille]
          Length = 175

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 8/154 (5%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  +T  G+  +QQEL+      RP        A    D ++ A   A +      E R+
Sbjct: 26  RNYITPDGYRHLQQELQQLLDVARP--------AAMQMDAADTAMASAQEASLREIEQRI 77

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L+  +  AEV+D S  +     F       E  +G+     IVG  E D   G +S  
Sbjct: 78  HYLQTRVESAEVVDASVHADGDRIFFGASVDYENTAGETHTATIVGLDELDPAQGRISWL 137

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+A++L+G E GD + +  P G +   +L V +
Sbjct: 138 SPLAQSLLGAEEGDTVLLQTPAGPEELHVLTVRY 171


>gi|289806266|ref|ZP_06536895.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 79

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 57/79 (72%)

Query: 80  TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
             +  R+ FGATV+++  ++ +++ Y+IVGD EAD +  L+S++SPIAR LIGKE  D++
Sbjct: 1   MPNNGRVIFGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVV 60

Query: 140 SVNAPGGEKTYEILQVLWI 158
            +  PGG+  YE+L+V ++
Sbjct: 61  VIKTPGGDVEYEVLKVEYL 79


>gi|171920968|ref|ZP_02932102.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|185179173|ref|ZP_02555812.2| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188024325|ref|ZP_02570283.2| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188518634|ref|ZP_02557002.2| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|188524482|ref|ZP_02558390.2| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195867660|ref|ZP_03079662.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198273725|ref|ZP_03206260.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|225551554|ref|ZP_03772500.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
 gi|171902992|gb|EDT49281.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 13 str. ATCC 33698]
 gi|184208908|gb|EDU05951.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 5 str. ATCC 27817]
 gi|188019005|gb|EDU57045.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 7 str. ATCC 27819]
 gi|188997849|gb|EDU66946.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 11 str. ATCC 33695]
 gi|195659661|gb|EDX53041.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 12 str. ATCC 33696]
 gi|195660717|gb|EDX53972.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 9 str. ATCC 33175]
 gi|198249753|gb|EDY74534.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 4 str. ATCC 27816]
 gi|225379369|gb|EEH01734.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 8 str. ATCC 27618]
          Length = 156

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 72/132 (54%)

Query: 24  QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83
             + P I K + +AR  GDLSENA+Y AAK  Q   + R  E+E I+   E+I+    S 
Sbjct: 23  DVKWPAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVMRST 82

Query: 84  DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
           D ++ G+T+ +       K+   +VG  ++D  +  +S+ +P+ +A++ ++ G  ++V+ 
Sbjct: 83  DEVSIGSTIEIYNYQKDHKEVITLVGSMDSDPFANKISMDTPLGKAVVKQKEGSEVTVHT 142

Query: 144 PGGEKTYEILQV 155
                  +I+++
Sbjct: 143 LASPYKVKIIKI 154


>gi|197117702|ref|YP_002138129.1| RNA polymerase-binding protein Rnk [Geobacter bemidjiensis Bem]
 gi|197087062|gb|ACH38333.1| RNA polymerase-binding protein Rnk [Geobacter bemidjiensis Bem]
          Length = 143

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 60/112 (53%)

Query: 46  NAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY 105
            A    A+  Q  +   + EL   + RAEV+D + +  D I   + V L + +S ++  Y
Sbjct: 22  EALIDKARSTQTRDSKNLKELGEELVRAEVVDPAGIPPDVITMNSKVCLQDLDSEEELVY 81

Query: 106 QIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +V   EAD+ SG +SI +P+  A+IG   GD I+   PGG K  ++ ++L+
Sbjct: 82  TLVFPNEADLASGKISILAPVGTAMIGFRTGDRITWPVPGGMKNLKVKKILY 133


>gi|300781602|ref|ZP_07091456.1| transcription elongation factor GreA [Corynebacterium genitalium
           ATCC 33030]
 gi|300533309|gb|EFK54370.1| transcription elongation factor GreA [Corynebacterium genitalium
           ATCC 33030]
          Length = 174

 Score = 84.8 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 4/156 (2%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             +  +T +   K++ EL+      RP I   I+E R  GDL ENA Y AA+E Q+  E 
Sbjct: 4   SQQQYITPEMKAKLEAELQQLIDN-RPAIAAEINERREEGDLKENAGYDAAREQQDQEEA 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-- 119
           R+ ++  ++  +       + G  +           +  DK+ + I     +     L  
Sbjct: 63  RIKQISELLANSTTERTGVVEGMAVVGSVVHVYYNGDENDKETFLIGTRAASTDNKDLET 122

Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
            S  SP+  A++G   G+  +  AP G E +  I  
Sbjct: 123 YSEQSPLGAAVLGATEGETRTYTAPNGREISVTIES 158


>gi|70732647|ref|YP_262410.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5]
 gi|68346946|gb|AAY94552.1| transcription elongation factor GreB [Pseudomonas fluorescens Pf-5]
          Length = 197

 Score = 84.8 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 17/155 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
                VT +G  ++Q  +     +                DL ++A+    K+     E 
Sbjct: 58  AQPNYVTPQGLAELQARVALLHSQH-----------SEQNDLGDDAD----KQRMAELER 102

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V+  +  S D++  G+ V+  ++    +   Q+VG+ +AD   GL++
Sbjct: 103 DLRYFTQRLHSAQVVT-TANSTDKVQIGSRVTFADEQDRQQS-VQLVGEDQADAAKGLIN 160

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +SP+ RAL+G + GD +    P G +  EI+++ 
Sbjct: 161 WASPLGRALLGAQPGDEVLWQRPAGNQLIEIIRIE 195


>gi|282889896|ref|ZP_06298434.1| hypothetical protein pah_c005o031 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500219|gb|EFB42500.1| hypothetical protein pah_c005o031 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 731

 Score = 84.8 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 5/156 (3%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           + I  T +G+ + Q+ +R     E     + I  AR+ GDL EN+EY+ A E ++  +G 
Sbjct: 578 NTIWTTEEGYLQTQERIRQIGTTEVVENAREIEAARSLGDLRENSEYKFALEKRSRLQGE 637

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  L   + RA +I    +  ++++ G+ V L +    +   Y I+G  +AD  + ++S 
Sbjct: 638 LKRLSEQLNRARIITKDDIYLNQVSVGSIVELEDPE-KNVVTYTILGPWDADADTNILSF 696

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            S  A A++G+++G+          + + I  +  I
Sbjct: 697 QSKFAEAMLGRKVGEEFEFR----NQNFTIRTIKNI 728


>gi|227328601|ref|ZP_03832625.1| transcription elongation factor GreA [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 79

 Score = 84.4 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/79 (43%), Positives = 57/79 (72%)

Query: 80  TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDII 139
             +  R+ FG+TV+++  ++ +++ Y+IVGD EAD +  L+S++SPIAR LIGKE  D++
Sbjct: 1   MTANGRVIFGSTVTVMNLDNEEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVV 60

Query: 140 SVNAPGGEKTYEILQVLWI 158
            +  PGG+  YEIL+V ++
Sbjct: 61  VIRTPGGDVEYEILKVEYL 79


>gi|330961596|gb|EGH61856.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 165

 Score = 84.4 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 75/154 (48%), Gaps = 17/154 (11%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
               VT++G + +Q+++   Q +   +         A GD ++       K+     E  
Sbjct: 26  QTNYVTARGLELLQEQVSNLQAQHSAQ--------SALGDDAD-------KQRLADLERD 70

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +      +  A+V+  +  + +++  G+ V+  +++  +++   +VG+ +AD  +GL++ 
Sbjct: 71  LRYFNQRLHSAQVVAPAAST-EKVQIGSWVTFADED-DNRQRVHLVGEDQADAANGLINW 128

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            SP+ RALIG + GD +    P G+ + E+L + 
Sbjct: 129 GSPLGRALIGAQKGDEVVWQRPAGDLSIEVLLIE 162


>gi|225550671|ref|ZP_03771620.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
 gi|225379825|gb|EEH02187.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 2 str. ATCC 27814]
          Length = 156

 Score = 84.4 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 72/132 (54%)

Query: 24  QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83
             + P I K + +AR  GDLSENA+Y AAK  Q   + R  E+E I+   E+I+    S 
Sbjct: 23  DVKWPAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVMRST 82

Query: 84  DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
           D ++ G+T+ +       K+   +VG  ++D  +  +S+ +P+ +A++ ++ G  ++V+ 
Sbjct: 83  DEVSIGSTIEIYNYQKDRKEVITLVGSMDSDPFANKISMDTPLGKAVVKQKEGSEVTVHT 142

Query: 144 PGGEKTYEILQV 155
                  +I+++
Sbjct: 143 LASPYKVKIIKI 154


>gi|166153977|ref|YP_001654095.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
           trachomatis 434/Bu]
 gi|166154852|ref|YP_001653107.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
           trachomatis L2b/UCH-1/proctitis]
 gi|301335174|ref|ZP_07223418.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
           trachomatis L2tet1]
 gi|165929965|emb|CAP03448.1| Transcription elongation factor [Chlamydia trachomatis 434/Bu]
 gi|165930840|emb|CAP06402.1| Transcription elongation factor [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 715

 Score = 84.1 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 5/151 (3%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           TS  F +++ +L+    +E     K I +ARA GDL EN+EY+ A E +   +  +  L 
Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFASERRARLQEEIRVLS 627

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             I RA+++    +  D +  G  V L E + GDK  Y I+G  +A+    ++S+ S +A
Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKVVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + ++GK +G+ +      G+K  +I ++  I
Sbjct: 687 QEMVGKAVGETVLFQ---GKKH-KIKEISSI 713


>gi|209554023|ref|YP_002284702.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 10 str. ATCC 33699]
 gi|238058241|sp|B5ZBB2|GREA_UREU1 RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|209541524|gb|ACI59753.1| transcription elongation factor GreA [Ureaplasma urealyticum
           serovar 10 str. ATCC 33699]
          Length = 156

 Score = 84.1 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 72/132 (54%)

Query: 24  QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83
             + P I K + +AR  GDLSENA+Y AAK  Q   + R  E+E I+   E+I+    S 
Sbjct: 23  DVKWPAITKQLQDAREQGDLSENADYDAAKNEQAALKKRKDEIEEILENYELIEDVMRST 82

Query: 84  DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
           D ++ G+T+ +       K+   +VG  ++D  +  +S+ +P+ +A++ ++ G  ++V+ 
Sbjct: 83  DEVSIGSTIEIYNYQKDHKEVITLVGSMDSDPFANKISMDTPLGKAVVKQKEGSEVTVHT 142

Query: 144 PGGEKTYEILQV 155
                  +I+++
Sbjct: 143 LALPYKVKIIKI 154


>gi|284449158|dbj|BAI67350.1| transcription elongation factor [Lactobacillus fermentum]
          Length = 303

 Score = 83.7 bits (205), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 73/139 (52%), Gaps = 9/139 (6%)

Query: 1   MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           ++ KI    +T  G+  I++++   +Q +RP +I  +  AR  GDLSEN EY  AK    
Sbjct: 11  IMAKIYYQEMTPAGYRAIEEQIEALKQ-KRPTLIARLKAARVLGDLSENTEYSTAKRELR 69

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI---VGDQEAD 114
             E  +  L+  +T A+VID+S     ++A G  V++   +  ++  YQI      ++A 
Sbjct: 70  HLESCLRYLDKQLTYAKVIDVSDD--GKVALGKVVTIRFLDDQEEATYQIVGRYQAEQAS 127

Query: 115 VQSGLVSISSPIARALIGK 133
           +   +++  SP+  AL GK
Sbjct: 128 LTEEVLAFDSPLGLALKGK 146


>gi|153813303|ref|ZP_01965971.1| hypothetical protein RUMOBE_03720 [Ruminococcus obeum ATCC 29174]
 gi|149830593|gb|EDM85684.1| hypothetical protein RUMOBE_03720 [Ruminococcus obeum ATCC 29174]
          Length = 208

 Score = 83.7 bits (205), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 81/152 (53%), Gaps = 2/152 (1%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T +  +KI++E+  R+   R   I+A+ EARA GDLSEN EY AAK+ +N NE R+ 
Sbjct: 45  ERLTKRDIEKIEEEIEHRKLVIRKEAIEAVKEARAQGDLSENFEYYAAKKHKNQNESRIR 104

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE ++  A V+D S+ S +       V +  +  G+ + Y++V     +     VSI S
Sbjct: 105 YLERMLKTATVVDDSSKSDEVG-MDDIVEVEFEEDGEVEKYKLVTSIRGNSMENRVSIES 163

Query: 125 PIARALIGKELGDIISVNAPGGEKTY-EILQV 155
           PI +AL G  +GD + VN       Y  +  +
Sbjct: 164 PIGKALKGHRVGDRVLVNVNENVSYYLRVKSI 195


>gi|28875484|gb|AAO59965.1| GreA [uncultured bacterium]
          Length = 597

 Score = 83.7 bits (205), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 14/152 (9%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T+ G ++ ++ L+   Q  R  ++     A    DL E +E           E  +A+
Sbjct: 459 YMTAAGAERYRRRLQQLVQ-RRDELL-----ASPDDDLPERSE-------LATLERELAQ 505

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           +  ++  A VI +++   D + FGA V + +     +  +Q+VG+ EA  + GLV+  SP
Sbjct: 506 VSAVLQGAIVIRLASPPRDEVRFGAEVVVEDDRGS-RSRFQLVGENEAAPERGLVNWFSP 564

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + RAL G  LG  +    P G   Y + ++ +
Sbjct: 565 LGRALAGARLGQRVEWTTPAGRGAYVVREISY 596


>gi|330888755|gb|EGH21416.1| transcription elongation factor GreB [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 165

 Score = 83.7 bits (205), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 17/155 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
                VT++G   +++ +   Q +   +         A GD ++       K+ Q   E 
Sbjct: 25  AQTNYVTAEGLKLLKKHVSSLQAQHSAQT--------ALGDAAD-------KQRQADLER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V+  + +S +++  G+ V+  ++ +  ++   +VG+ +AD   GL++
Sbjct: 70  DLRYYTQRLQSAQVVT-TAVSTEKVQIGSWVTFADEENN-RQRVHLVGEDQADAAKGLIN 127

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+ RALIG + GD +    P G ++ EIL + 
Sbjct: 128 WGSPLGRALIGAQKGDEVVWERPAGNQSIEILLIE 162


>gi|148545953|ref|YP_001266055.1| GreA/GreB family elongation factor [Pseudomonas putida F1]
 gi|148510011|gb|ABQ76871.1| GreA/GreB family elongation factor [Pseudomonas putida F1]
          Length = 165

 Score = 83.7 bits (205), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 23/154 (14%)

Query: 5   IPVTSKGFDKIQ---QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             VT+ G  ++Q    EL   + E        +      GD          K+     E 
Sbjct: 28  NYVTASGLRQLQTRVAELNALRSE--------LQAQGEQGD----------KQRLADTER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V+  +  S  ++  G+ V  V+     ++  ++VG+ EAD   GL++
Sbjct: 70  DLRYFSARVQSAQVV-PAATSHSKVQIGSRVRFVDT-HDQEQVVRLVGEDEADAGHGLIN 127

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+ RAL+G   GD +    P GE+  E++++
Sbjct: 128 WGSPLGRALLGAGPGDEVVWRRPVGEQVIEVVEI 161


>gi|166153878|gb|ABY82795.1| transcription elongation factor [Listonella anguillarum]
          Length = 126

 Score = 83.3 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 54/127 (42%), Positives = 92/127 (72%), Gaps = 2/127 (1%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K+P+T +G +++ +E   R  + RP+I +AI+ AR  GDL ENAEY AA+E Q + E 
Sbjct: 1   MEKVPMTVRG-EQLLREELDRLLKLRPQITQAIATARELGDLKENAEYHAAREEQGICEA 59

Query: 62  RMAELENIITRAEVIDISTMSGD-RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           ++ ++E  ++ A+VIDI+ M    ++ FG+TV+L++ ++ + K YQIVG+ EA+++SG +
Sbjct: 60  QIRDIEYKLSVAQVIDITKMENTGKVIFGSTVTLIDSDTDEVKRYQIVGEDEAEIKSGRI 119

Query: 121 SISSPIA 127
           S+SSPIA
Sbjct: 120 SVSSPIA 126


>gi|298488825|ref|ZP_07006852.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156666|gb|EFH97759.1| Transcription elongation factor GreB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 165

 Score = 82.9 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 17/155 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
                VT++G   +++ +   Q +   +         A GD ++       K+ Q   E 
Sbjct: 25  AQTNYVTAEGLKLLKKHVSSLQAQHSAQT--------ALGDAAD-------KQRQADLER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V+  + +S +++  G+ V+  ++   +++   +VG+ +AD   GL++
Sbjct: 70  DLRYYTQRLQSAQVVT-TAVSTEKVQIGSWVTFADEE-DNRQRVHLVGEDQADAAKGLIN 127

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+ RALIG + GD +    P G ++ EIL + 
Sbjct: 128 WGSPLGRALIGAQKGDEVVWEPPAGNQSIEILLIE 162


>gi|213584093|ref|ZP_03365919.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 71

 Score = 82.9 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 54/71 (76%)

Query: 88  FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
           FGATV+++  ++ +++ Y+IVGD EAD +  L+S++SPIAR LIGKE  D++ +  PGG+
Sbjct: 1   FGATVTVLNLDTDEEQTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVIKTPGGD 60

Query: 148 KTYEILQVLWI 158
             YE+L+V ++
Sbjct: 61  VEYEVLKVEYL 71


>gi|15605367|ref|NP_220153.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
           trachomatis D/UW-3/CX]
 gi|76789375|ref|YP_328461.1| fused transcript cleavage factor/uncharacterized domain-containing
           protein [Chlamydia trachomatis A/HAR-13]
 gi|237803065|ref|YP_002888259.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
           trachomatis B/Jali20/OT]
 gi|255311460|ref|ZP_05354030.1| Transcription elongation factor [Chlamydia trachomatis 6276]
 gi|255317761|ref|ZP_05359007.1| Transcription elongation factor [Chlamydia trachomatis 6276s]
 gi|255349021|ref|ZP_05381028.1| Transcription elongation factor [Chlamydia trachomatis 70]
 gi|255503560|ref|ZP_05381950.1| Transcription elongation factor [Chlamydia trachomatis 70s]
 gi|7531128|sp|O84641|GREA_CHLTR RecName: Full=Transcription elongation factor greA; AltName:
           Full=Transcript cleavage factor greA
 gi|3329084|gb|AAC68240.1| Transcription Elongation Factor G [Chlamydia trachomatis D/UW-3/CX]
 gi|76167905|gb|AAX50913.1| GreA [Chlamydia trachomatis A/HAR-13]
 gi|231274299|emb|CAX11094.1| Transcription elongation factor [Chlamydia trachomatis B/Jali20/OT]
 gi|296436174|gb|ADH18348.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
           trachomatis G/9768]
 gi|296437102|gb|ADH19272.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
           trachomatis G/11222]
 gi|296438034|gb|ADH20195.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
           trachomatis G/11074]
 gi|297140536|gb|ADH97294.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
           trachomatis G/9301]
 gi|297748766|gb|ADI51312.1| GreA [Chlamydia trachomatis D-EC]
 gi|297749646|gb|ADI52324.1| GreA [Chlamydia trachomatis D-LC]
          Length = 715

 Score = 82.9 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 80/151 (52%), Gaps = 5/151 (3%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           TS  F +++ +L+    +E     K I +ARA GDL EN+EY+ A E +   +  +  L 
Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKIALERRARLQEEIHVLS 627

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             I RA+++    +  D +  G  V L E + GDK  Y I+G  +A+    ++S+ S +A
Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKVVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + ++GK +G+ +      G+K  +I ++  I
Sbjct: 687 QEMVGKAVGETVLFQ---GKKH-KIKEISSI 713


>gi|71735306|ref|YP_276410.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|257482138|ref|ZP_05636179.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|71555859|gb|AAZ35070.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|115265608|dbj|BAF32869.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           phaseolicola]
 gi|320322617|gb|EFW78710.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330598|gb|EFW86577.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330873441|gb|EGH07590.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330987544|gb|EGH85647.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331011394|gb|EGH91450.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 165

 Score = 82.9 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 17/155 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
                VT++G   +++ +   Q +   +         A GD ++       K+ Q   E 
Sbjct: 25  AQTNYVTAEGLKLLKKHVSSLQAQHSAQT--------ALGDAAD-------KQRQADLER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V+  + +S +++  G+ V+  ++   +++   +VG+ +AD   GL++
Sbjct: 70  DLRYYTQRLQSAQVVT-TAVSTEKVQIGSWVTFADEE-DNRQRVHLVGEDQADAAKGLIN 127

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+ RALIG + GD +    P G ++ EIL + 
Sbjct: 128 WGSPLGRALIGAQKGDEVVWERPAGNQSIEILLIE 162


>gi|289525679|emb|CBJ15160.1| Transcription elongation factor [Chlamydia trachomatis Sweden2]
          Length = 715

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 5/151 (3%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           TS  F +++ +L+    +E     K I +ARA GDL EN+EY+ A E +   +  +  L 
Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFASERRARLQEEIRVLS 627

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             I RA+++    +  D +  G  + L E + GDK  Y I+G  +A+    ++S+ S +A
Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKIVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + ++GK +G+ +      G+K  +I ++  I
Sbjct: 687 QEMVGKAVGETVLFQ---GKKH-KIKEISSI 713


>gi|289628327|ref|ZP_06461281.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289650125|ref|ZP_06481468.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330869003|gb|EGH03712.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 165

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 17/155 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
                VT++G   +++ +   Q +   +         A GD ++       K+ Q   E 
Sbjct: 25  AQTNYVTAEGLKLLKKHVSSLQAQHSAQT--------ALGDAAD-------KQRQADLER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V+  + +S +++  G+ V+  ++   +++   +VG+ +AD   GL++
Sbjct: 70  DLRYYTQRLQSAQVVT-TAISTEKVQIGSWVTFADEE-DNRQRVHLVGEDQADAAKGLIN 127

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+ RALIG + GD +    P G ++ EIL + 
Sbjct: 128 WGSPLGRALIGAQKGDEVVWERPAGNQSIEILLIE 162


>gi|89898809|ref|YP_515919.1| fused transcript cleavage factor/uncharacterized domain-containing
           protein [Chlamydophila felis Fe/C-56]
 gi|89332181|dbj|BAE81774.1| transcription elongation and transcript cleavage factor
           [Chlamydophila felis Fe/C-56]
          Length = 717

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 5/151 (3%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           T + F K++ +L+    +E     K I +ARA GDL EN+EY+ A E +   +  +  L 
Sbjct: 569 TPESFTKMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFALEKRARLQEEIRVLS 628

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             + RA ++    +  D++  G  VSL ++       Y I+G  +AD  + ++S+ S +A
Sbjct: 629 EEVNRARILTKDVVFTDKVGVGCKVSLEDEKGSL-ITYSILGPWDADPDNYILSLKSKLA 687

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + ++ K +G  +        K Y+I ++  I
Sbjct: 688 QEMLDKSVGASLQFQ----GKKYKISRIQSI 714


>gi|255507239|ref|ZP_05382878.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
           trachomatis D(s)2923]
 gi|296435247|gb|ADH17425.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
           trachomatis E/150]
 gi|296438966|gb|ADH21119.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
           trachomatis E/11023]
          Length = 715

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 80/151 (52%), Gaps = 5/151 (3%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           TS  F +++ +L+    +E     K I +ARA GDL EN+EY+ A E +   +  +  L 
Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARALGDLRENSEYKFASERRARLQEEIRVLS 627

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             I RA+++    +  D +  G  + L E + GDK  Y I+G  +A+    ++S+ S +A
Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKIVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + ++GK +G+ +      G+K  +I ++  I
Sbjct: 687 QEMVGKAVGETVLFQ---GKKH-KIKEISSI 713


>gi|329942321|ref|ZP_08291131.1| transcription elongation factor GreA domain protein [Chlamydophila
           psittaci Cal10]
 gi|313847560|emb|CBY16548.1| conserved hypothetical protein [Chlamydophila psittaci RD1]
 gi|328815231|gb|EGF85219.1| transcription elongation factor GreA domain protein [Chlamydophila
           psittaci Cal10]
          Length = 717

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 5/151 (3%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           T + F K++ +L+    +E     K I +ARA GDL EN+EY+ A E +   +  +  L 
Sbjct: 569 TPESFTKMKNKLQSLVGKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEEIRVLS 628

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             + RA ++    +  D +  G  VSL ++       Y I+G  +AD  + ++S+ S +A
Sbjct: 629 EEVNRARILTKDIVFTDTVGVGCKVSLEDEQGNL-ITYSILGPWDADPDNYILSLKSKLA 687

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + ++ K +G  +        K Y+I ++  I
Sbjct: 688 QEMLNKSVGASLQFQ----GKKYKISRIQSI 714


>gi|226355352|ref|YP_002785092.1| transcription elongation factor [Deinococcus deserti VCD115]
 gi|226317342|gb|ACO45338.1| putative transcription elongation factor [Deinococcus deserti
           VCD115]
          Length = 162

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 6/159 (3%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            ++ +T +GF+++Q+ L   +Q+      + + E       +E+   + AK  +   E R
Sbjct: 6   RQVRLTREGFERLQKTLEQ-EQQRLAEATRILQEQMETSADTEDTGLEDAKREKMAIEAR 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG---L 119
           + ELE+ + RA +I+    +  R+  GA V+L  + +      Q+V   EA V  G    
Sbjct: 65  LDELEDTLARATIIE-DHENDGRVELGAIVNLSNETTKKDMKVQVVSAPEAAVLGGSLPR 123

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +S  SP+ + L+G++ GD   VN  GG++  Y++  + +
Sbjct: 124 ISEDSPVGKELMGRKTGDSFVVNLEGGKQVKYKVKSIEY 162


>gi|167031723|ref|YP_001666954.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1]
 gi|166858211|gb|ABY96618.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1]
          Length = 165

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 23/155 (14%)

Query: 5   IPVTSKGFDKIQQ---ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             VT+ G  ++Q    EL   +            E  A G+  +       K+     E 
Sbjct: 28  NYVTASGLQQLQARVAELNALRS-----------ELLAQGERGD-------KQRLADTER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V+  +  S  ++  G+ V  V+     +   ++VG+ EAD   GL++
Sbjct: 70  DLRYFSARVQSAQVV-PAAASRSKVQIGSRVRFVDAQ-DQEHVVRLVGEDEADAGRGLIN 127

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+ RAL+G   GD +    P G++  EIL++ 
Sbjct: 128 WGSPLGRALLGAGPGDEVVWRRPVGDQVIEILEIE 162


>gi|332286963|ref|YP_004421864.1| fused trancript cleavage factor/uncharacterized domain-containing
           protein [Chlamydophila psittaci 6BC]
 gi|325506501|gb|ADZ18139.1| fused trancript cleavage factor/uncharacterized domain-containing
           protein [Chlamydophila psittaci 6BC]
 gi|328914193|gb|AEB55026.1| transcription elongation factor GreA [Chlamydophila psittaci 6BC]
          Length = 717

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 5/151 (3%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           T + F K++ +L+    +E     K I +ARA GDL EN+EY+ A E +   +  +  L 
Sbjct: 569 TPESFTKMKNKLQSLVDKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEEIRVLS 628

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             + RA ++    +  D +  G  VSL ++       Y I+G  +AD  + ++S+ S +A
Sbjct: 629 EEVNRARILTKDIVFTDTVGVGCKVSLEDEQGNL-ITYSILGPWDADPDNYILSLKSKLA 687

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + ++ K +G  +        K Y+I ++  I
Sbjct: 688 QEMLNKSVGASLQFQ----GKKYKISRIQSI 714


>gi|120435907|ref|YP_861593.1| GreA-like transcription elongation factor [Gramella forsetii
           KT0803]
 gi|117578057|emb|CAL66526.1| GreA-like transcription elongation factor [Gramella forsetii
           KT0803]
          Length = 166

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 15/153 (9%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G  +++QEL+  + E      +                    +  Q+L +G++ 
Sbjct: 29  NYVTPNGLAELKQELKDLEYERAHVEAEN---------------DTEKRRAQSLIDGKIN 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   +  A ++D      D I FGA V L  + SG  + +QIVG  EAD++   ++  +
Sbjct: 74  LLSERLQTARLLDSKDQPKDEIRFGARVKLTNETSGQLQEFQIVGVDEADIKKKKIAFVA 133

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           PIA+A+ G+++G+ I        +  ++L + +
Sbjct: 134 PIAKAVTGRKVGEEIDFKLGNEIRKLKVLGITY 166


>gi|26987412|ref|NP_742837.1| GreA/GreB family elongation factor [Pseudomonas putida KT2440]
 gi|24982070|gb|AAN66301.1|AE016258_7 transcription elongation factor, putative [Pseudomonas putida
           KT2440]
          Length = 165

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 23/154 (14%)

Query: 5   IPVTSKGFDKIQ---QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             VT+ G  ++Q    EL   + E        +      GD          K+     E 
Sbjct: 28  NYVTASGLRQLQTRVAELNALRSE--------LQAQGERGD----------KQRLADTER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V+  +  S  ++  G+ V  V+     ++  Q+VG+ EAD   GL++
Sbjct: 70  DLRYFSARVQSAQVV-PAATSHSKVQIGSRVRFVDAQ-DQEQVVQLVGEDEADAGHGLIN 127

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+ RAL+G   GD +    P GE+  E++++
Sbjct: 128 WGSPLGRALLGAGPGDEVVWRRPVGEQVIEVVEI 161


>gi|253701567|ref|YP_003022756.1| GreA/GreB family elongation factor [Geobacter sp. M21]
 gi|251776417|gb|ACT18998.1| GreA/GreB family elongation factor [Geobacter sp. M21]
          Length = 143

 Score = 82.1 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 58/105 (55%)

Query: 53  KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
           +  Q  +   + EL   + RAEV+D + +  D I   + V L + +S ++  Y +V   E
Sbjct: 29  RSTQTRDSKNLQELGEELVRAEVVDPAGIPPDVITMNSKVCLQDLDSKEELVYTLVFPNE 88

Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +D+ SG +SI +P+  A+IG   GD I+   PGG K  ++ +VL+
Sbjct: 89  SDLASGKISILAPVGTAMIGFRTGDSITWPVPGGMKNLKVKKVLY 133


>gi|28871733|ref|NP_794352.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213966755|ref|ZP_03394906.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tomato T1]
 gi|301383263|ref|ZP_07231681.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tomato Max13]
 gi|302133480|ref|ZP_07259470.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28854985|gb|AAO58047.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213928605|gb|EEB62149.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tomato T1]
 gi|331018897|gb|EGH98953.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 165

 Score = 82.1 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
                VT+ G   +++ +   Q +   +   A+ EA               K+     E 
Sbjct: 25  AQTNYVTAHGLRLLKEHVSSLQAQHSAQ--SALGEASD-------------KQRLADLER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V+  +  + +++  G+ ++  +++    +  Q+VG+ +AD   GL++
Sbjct: 70  DLRYFNQRLQSAQVVAPALST-EKVQIGSWITFADEDDNH-QRVQLVGEDQADAAKGLIN 127

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+ RALIG + GD ++   P G+ + E+L + 
Sbjct: 128 WGSPLGRALIGAQKGDEVTWQRPAGDLSIEVLLIE 162


>gi|62184651|ref|YP_219436.1| fused transcript cleavage factor/uncharacterized domain-containing
           protein [Chlamydophila abortus S26/3]
 gi|62147718|emb|CAH63462.1| conserved hypothetical protein [Chlamydophila abortus S26/3]
          Length = 717

 Score = 82.1 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 5/151 (3%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           T + F K++ +L+    +E     K I +ARA GDL EN+EY+ A E +   +  +  L 
Sbjct: 569 TPESFTKMKNKLQSLVGKEMVDNAKEIEDARALGDLRENSEYKFALEKRARLQEEIRVLS 628

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             + RA ++    +  D +  G  VSL ++       Y I+G  +AD  + ++S+ S +A
Sbjct: 629 EEVNRARILTKDIVFTDTVGVGCKVSLEDEQGNL-ITYSILGPWDADPDNYILSLKSKLA 687

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + ++ K +G  +        K Y+I ++  I
Sbjct: 688 QEMLNKSVGASLQFQ----GKKYKISRIQSI 714


>gi|313497038|gb|ADR58404.1| GreA/GreB family elongation factor [Pseudomonas putida BIRD-1]
          Length = 165

 Score = 82.1 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 23/154 (14%)

Query: 5   IPVTSKGFDKIQ---QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             VT+ G  ++Q    EL   + E        +      GD          K+     E 
Sbjct: 28  NYVTASGLRQLQTRVAELNALRSE--------LQAQGERGD----------KQRLADTER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V+  +  S  ++  G+ V  V+     ++  Q+VG+ EAD   GL++
Sbjct: 70  DLRYFSARVQSAQVV-PAATSHSKVQIGSRVRFVDAQ-DQEQLVQLVGEDEADAGRGLIN 127

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+ RAL+G   GD +    P GE+  E++++
Sbjct: 128 WGSPLGRALLGAGPGDEVVWQRPVGEQVIEVVEI 161


>gi|227534584|ref|ZP_03964633.1| transcription elongation factor [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227187833|gb|EEI67900.1| transcription elongation factor [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 128

 Score = 81.7 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 67/130 (51%), Gaps = 3/130 (2%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MV    +T  G   ++QE+   +   RP  IK +++A A GD SENAEY AAK      E
Sbjct: 1   MVTYHEITPTGLANLKQEVEDLKTI-RPAKIKNLADAAALGDRSENAEYSAAKRELRQLE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GR+  L+ +I  A+V   +         G  ++L   +  D+  Y++VG  EA +    +
Sbjct: 60  GRLRYLDKLIRYAKVTHPAASDI--ADIGNRITLKFDDDEDQATYELVGPAEAGMGQDKL 117

Query: 121 SISSPIARAL 130
           +I+SP+  A+
Sbjct: 118 AINSPLGAAI 127


>gi|29839773|ref|NP_828879.1| fused transcript cleavage factor/uncharacterized domain-containing
           protein [Chlamydophila caviae GPIC]
 gi|29834120|gb|AAP04757.1| transcription elongation factor GreA [Chlamydophila caviae GPIC]
          Length = 717

 Score = 81.7 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 76/151 (50%), Gaps = 5/151 (3%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           T + F K++ +L+    +E     K I +AR  GDL EN+EY+ A E +   +  +  L 
Sbjct: 569 TPESFTKMKNKLQSLSGKEMVDNAKEIEDARVLGDLRENSEYKFALEKRARLQEEIRVLS 628

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             + RA ++    +  D++  G  VSL ++N      Y I+G  +AD  + ++S+ S +A
Sbjct: 629 EEVNRARILTKDIVFTDKVGVGCKVSLEDENGNL-ITYSILGPWDADPDNYILSLKSKLA 687

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + ++ K +G  +        K Y+I ++  I
Sbjct: 688 QEMLDKSVGAAVQFQ----GKKYKISRIQSI 714


>gi|229592705|ref|YP_002874824.1| putative transcription elongation factor [Pseudomonas fluorescens
           SBW25]
 gi|229364571|emb|CAY52453.1| putative transcription elongation factor [Pseudomonas fluorescens
           SBW25]
          Length = 162

 Score = 81.7 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 20/152 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T++G  ++Q ++   Q        K        GD          K+ Q   E  + 
Sbjct: 28  NRLTAQGLAQLQAKVAQLQHAYSIESAK--------GD----------KQRQADLERDLR 69

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+V+  +T + D++  G+ V+   +     +  Q+VG+ +AD  +GL++  S
Sbjct: 70  YFNQRLQSAQVVAPATST-DKVQIGSWVTFANEQDEQ-QRIQLVGEDQADANAGLINWGS 127

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+ RAL+G ++GD +    P G++  E+L++ 
Sbjct: 128 PLGRALLGAQVGDEVLWKRPVGDQLIEVLRIE 159


>gi|227487834|ref|ZP_03918150.1| transcription elongation factor GreA [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227542474|ref|ZP_03972523.1| transcription elongation factor GreA [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227092161|gb|EEI27473.1| transcription elongation factor GreA [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227181672|gb|EEI62644.1| transcription elongation factor GreA [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 180

 Score = 81.7 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 5/151 (3%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  K  +T +    +++EL+      RP I   I+E R  GDL ENA Y AA++ Q  
Sbjct: 1   MAEVQKTYITPESKAALERELKALIDN-RPAIAAEINERREEGDLKENAGYDAARDQQAQ 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DVQ 116
            E R+ E+E ++  +     +   G+             +  DK+ + I     A  +  
Sbjct: 60  EESRIREIEEMLKNSTTERTALKEGEAQVGSVVHVYYNDDENDKETFLIGTRATASDNPD 119

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGE 147
               S  SP+  A++G   G+     AP G 
Sbjct: 120 LETYSELSPLGAAVLGATEGETRQYTAPNGV 150


>gi|15895237|ref|NP_348586.1| transcription elongation factor GreA [Clostridium acetobutylicum
           ATCC 824]
 gi|15024946|gb|AAK79926.1|AE007701_3 Transcription elongation factor GreA [Clostridium acetobutylicum
           ATCC 824]
 gi|325509383|gb|ADZ21019.1| Transcription elongation factor GreA [Clostridium acetobutylicum EA
           2018]
          Length = 158

 Score = 81.7 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 1/140 (0%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T   +DK+++E  +R   +R  I K   EA A+GD SENAEY+AAKE    N  R+ ++
Sbjct: 5   LTKSDYDKLKEEYEYRNTVKRHEIAKKKMEAAAFGDRSENAEYKAAKEEYYHNNRRLGQI 64

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY-QIVGDQEADVQSGLVSISSP 125
             ++  A +++   +  +       +  +  +   K      +     D     +S+ SP
Sbjct: 65  SRLLKNAIIVEEDKIDDEVNIGSEMLLKIGADETFKAKLVTTLNISVEDEDIEYISVDSP 124

Query: 126 IARALIGKELGDIISVNAPG 145
             +AL  K +GD I VN P 
Sbjct: 125 FGKALYKKHVGDSIDVNLPD 144


>gi|330952915|gb|EGH53175.1| transcription elongation factor GreA/GreB [Pseudomonas syringae Cit
           7]
          Length = 165

 Score = 81.7 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 71/152 (46%), Gaps = 17/152 (11%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT++G   +++ +   Q +   +    + EA               K+     E  + 
Sbjct: 28  NYVTAEGLTLLKKHVNSLQAQHSAQTA--LGEAAD-------------KQRLADLERDLR 72

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+V+  +  + +++  G+ V+  ++   +++   +VG+ +AD  +GL++  S
Sbjct: 73  YFNQRLQSAQVVAPAVST-EKVQIGSWVTFADEQ-DNQQRVHLVGEDQADAANGLINWGS 130

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+ RALIG + GD +    P G+++ E+L + 
Sbjct: 131 PLGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162


>gi|104780044|ref|YP_606542.1| transcription elongation factor [Pseudomonas entomophila L48]
 gi|95109031|emb|CAK13727.1| putative transcription elongation factor [Pseudomonas entomophila
           L48]
          Length = 165

 Score = 81.4 bits (199), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 17/152 (11%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT+ G  ++QQ +   +            E  A GD ++       K+     E  + 
Sbjct: 28  NYVTASGLAQLQQRVATLKALH--------GELLAEGDRAD-------KQRLADTERDLR 72

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
              + +  A+V+  +  S  ++  G+ V  V++N       Q+VG+ +AD   GLV+  S
Sbjct: 73  YFTSRLHSAQVV-PAATSTQKVQIGSRVRFVDENGQA-HQVQLVGEDQADAVHGLVNWGS 130

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+ RAL+G   GD +    P G++  EI+ V 
Sbjct: 131 PLGRALLGAGPGDEVLWRRPAGDQMIEIIGVE 162


>gi|302062497|ref|ZP_07254038.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           tomato K40]
          Length = 165

 Score = 81.4 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
                VT+ G   +++ +   Q +   +   A+ EA               K+     E 
Sbjct: 25  AQTNYVTAHGLRLLKEHVSSLQAQHSAQ--SALGEASD-------------KQRLADLER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V+  +  + +++  G+ ++  +++    +  Q+VG+ +AD   GL++
Sbjct: 70  DLRYFNQRLQSAQVVAPALST-EKVQIGSWITFADEDDNH-QRVQLVGEDQADAAKGLIN 127

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+ RALIG + GD ++   P G+ + E+L + 
Sbjct: 128 WGSPLGRALIGAQKGDEVTWQRPAGDLSIEVLLIE 162


>gi|330881018|gb|EGH15167.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 119

 Score = 81.0 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T  G + +++EL +  +E RP I + ++ A + GD SENA+YQ  K+L    +
Sbjct: 1   MSTKI-ITRGGHEALKKELDYLWREHRPDITQKVAWAASLGDRSENADYQYNKKLLREID 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            R+  L   +    V+  S     R+ FGA V +  +    K  ++IVG  E   ++  +
Sbjct: 60  RRVRYLRKRLEDMRVVQYSPEQEGRVFFGAWVEIENEAGDLK-KFRIVGYDEIYGRNDYI 118

Query: 121 S 121
           S
Sbjct: 119 S 119


>gi|332981932|ref|YP_004463373.1| GreA/GreB family elongation factor [Mahella australiensis 50-1 BON]
 gi|332699610|gb|AEE96551.1| GreA/GreB family elongation factor [Mahella australiensis 50-1 BON]
          Length = 138

 Score = 81.0 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 64/145 (44%), Gaps = 18/145 (12%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
           +DK++Q L   + ++   I +   E         NAE     +L +    R+ EL     
Sbjct: 11  YDKLRQHLDAIKSKKDDMIDRYFPEL--------NAERYDFMQLMDDYIKRLGELLQ--- 59

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
                         +  G+TV + + +      + +V   E++   G +S  SPI ++L+
Sbjct: 60  -------QNCDTPFVIIGSTVKVRDIDDDYTITFTLVCPHESNPVKGCISYLSPIGKSLL 112

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
            K+ G+I+SV  P GE  YEIL++ 
Sbjct: 113 LKKAGEIVSVVTPNGEVRYEILEIK 137


>gi|237804986|ref|YP_002889140.1| transcript cleavage factor/unknown domain fusion protein [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|231273286|emb|CAX10201.1| Transcription elongation factor [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 715

 Score = 81.0 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 5/151 (3%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           TS  F +++ +L+    +E     K I +AR  GDL EN+EY+ A E +   +  +  L 
Sbjct: 568 TSDSFTRMKNKLQSLVGKEMVENAKEIEDARVLGDLRENSEYKIALERRARLQEEIHVLS 627

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             I RA+++    +  D +  G  V L E + GDK  Y I+G  +A+    ++S+ S +A
Sbjct: 628 EEINRAKILTKDAVFTDSVGVGCKVVL-ESDQGDKVCYTILGPWDANPDEKILSLKSKLA 686

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           + ++GK +G+ +      G+K  +I ++  I
Sbjct: 687 QEMVGKAVGETVLFQ---GKKH-KIKEISSI 713


>gi|302187999|ref|ZP_07264672.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
           syringae 642]
          Length = 165

 Score = 80.2 bits (196), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 70/152 (46%), Gaps = 17/152 (11%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT++G   +++ +   Q +   +    + EA               K+     E  + 
Sbjct: 28  NYVTAEGLTLLKKHVSSLQAQHSTQTA--LGEAAD-------------KQRLADLERDLR 72

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+V+  +  + +++  G+ V+  ++   +++   +VG+ +AD   GL++  S
Sbjct: 73  YFNQRLQSAQVVAPAVST-EKVQIGSWVTFADEQ-DNQQRVHLVGEDQADAAKGLINWGS 130

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+ RALIG + GD +    P G+++ E+L + 
Sbjct: 131 PLGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162


>gi|258614382|ref|ZP_05712152.1| transcription elongation factor GreA [Enterococcus faecium DO]
          Length = 130

 Score = 80.2 bits (196), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 55/130 (42%), Positives = 86/130 (66%), Gaps = 1/130 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           MV+K+  +T +G +K+++EL   +  +R  II+ I  AR +GDLSEN+EY++AK+ Q   
Sbjct: 1   MVEKVYPMTLEGKEKLEKELEELKTVKRGEIIERIKIARGFGDLSENSEYESAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EGR+  +EN+I  A++ID   +  D ++ G TV+ +E   G+++ Y IVG  EAD  SG 
Sbjct: 61  EGRITTIENMIRFAQIIDNDGVDADEVSIGKTVTFIELPDGEEEEYTIVGSAEADPFSGK 120

Query: 120 VSISSPIARA 129
           +S  SPIA+A
Sbjct: 121 ISNDSPIAQA 130


>gi|110639992|ref|YP_680202.1| transcription elongation factor [Cytophaga hutchinsonii ATCC 33406]
 gi|110282673|gb|ABG60859.1| transcription elongation factor [Cytophaga hutchinsonii ATCC 33406]
          Length = 149

 Score = 80.2 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 57/107 (53%)

Query: 51  AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
            AK+ ++++      L N +   ++++   +  + +   + V++V  +S  +  +Q+V  
Sbjct: 33  EAKQFKSISVVEANSLMNELKLGKLVEPEEIPNNVVTMHSIVTIVFMDSNKRVEFQLVYP 92

Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +ADV++  +SI SPIA ALIG ++GD I    P G    +I  + +
Sbjct: 93  DKADVKNNKISIFSPIATALIGYQIGDEIEWCVPAGMTKIKIESIAY 139


>gi|167949283|ref|ZP_02536357.1| transcription elongation factor GreB [Endoriftia persephone
           'Hot96_1+Hot96_2']
 gi|110589334|gb|ABG77176.1| transcription elongation factor [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 166

 Score = 80.2 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 64/124 (51%), Gaps = 2/124 (1%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +TS G  ++  E +   +  R  ++KA+S A A GD SENAEY   K+     + R+  
Sbjct: 38  YITSDGHQRLLAEEQGLWKRRR-EVVKALSAAAAEGDRSENAEYIYRKKELREIDRRIRY 96

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I   +V++    +  ++ F A V+L ++  G    Y+IVG  E D Q+  +S+ SP
Sbjct: 97  LQKRIPELKVVEQPPSNRQQVFFAAWVTLEDEQ-GVTHRYRIVGPDEIDHQADYISMDSP 155

Query: 126 IARA 129
           +   
Sbjct: 156 LGAG 159


>gi|189423237|ref|YP_001950414.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ]
 gi|189419496|gb|ACD93894.1| GreA/GreB family elongation factor [Geobacter lovleyi SZ]
          Length = 142

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 57/97 (58%)

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             + ELE  + +AE++D + +  D +   + VSL + +SG++  Y +V   +AD+  G +
Sbjct: 36  RYIEELEQELLKAEIVDATGVPPDVVTMNSRVSLQDLDSGEQLQYTLVFPGDADLNLGKI 95

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI +PI  AL G   GD IS + PGG +  +I +VL+
Sbjct: 96  SILAPIGTALFGYRTGDRISWSVPGGVRKLKIKKVLY 132


>gi|256370764|ref|YP_003108589.1| putative transcription elongation factor GreA [Candidatus Sulcia
           muelleri SMDSEM]
 gi|256009556|gb|ACU52916.1| putative transcription elongation factor GreA [Candidatus Sulcia
           muelleri SMDSEM]
          Length = 157

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/135 (32%), Positives = 80/135 (59%), Gaps = 1/135 (0%)

Query: 23  QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
           +  ER +I + I+EA   GDLSEN+EY+ AKE Q L E ++  L+  I    +ID+S ++
Sbjct: 21  ENLERLKIAEEIAEAIEKGDLSENSEYKIAKENQRLLEIKIFNLKKKINNTRIIDLSKIN 80

Query: 83  GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
             +++    V +    +G+   Y +V + E++++   +SI +PIA+ LIGK++G+I  + 
Sbjct: 81  TTKVSIFTKVKVKNIETGECIYYTLVPETESNIKKLKISIYTPIAKGLIGKKIGEIAHIK 140

Query: 143 APGGE-KTYEILQVL 156
            P  +    +IL++ 
Sbjct: 141 LPNNKFVNLKILKIK 155


>gi|226228266|ref|YP_002762372.1| transcription elongation factor GreA [Gemmatimonas aurantiaca T-27]
 gi|226091457|dbj|BAH39902.1| transcription elongation factor GreA [Gemmatimonas aurantiaca T-27]
          Length = 161

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/150 (29%), Positives = 80/150 (53%)

Query: 9   SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELEN 68
            +   ++ +E+   Q E    +   I +A   GDL EN+EY+AA E Q   + R+ +L  
Sbjct: 3   QELIAQMAREVEKLQFELNVTLPNEIRKAVELGDLKENSEYKAALERQQFVQARLGQLTQ 62

Query: 69  IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
            +T+   IDI+ + GDR+  G+ V + +  S  ++ Y++V     ++  G V++ SPI R
Sbjct: 63  RVTKLANIDITQIPGDRVGLGSKVIVEDLQSKARETYELVFGDAGELHDGHVTMGSPIGR 122

Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           AL GK +G+   +  P   +  +I+++  I
Sbjct: 123 ALQGKSVGEEAILKLPTRIRKLQIVELQTI 152


>gi|94985009|ref|YP_604373.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM
           11300]
 gi|94555290|gb|ABF45204.1| GreA/GreB family elongation factor [Deinococcus geothermalis DSM
           11300]
          Length = 162

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             ++ +T +GF+++Q+ L   +Q       + + E       +E+   + AK  +   E 
Sbjct: 5   TRQVRLTREGFERLQRTLAQ-EQARLAEATRILQEQMETSADNEDTGLEDAKREKLNIEA 63

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--- 118
           R+ ELE+ + RA +I+    +  R+  GA V+L  + +      Q+V   EA V  G   
Sbjct: 64  RIEELEDTLARATLIE-DHENAGRVELGAVVTLNNETTKQTMRVQVVSAPEATVLGGSLP 122

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
            +S  SP+ R L+G++  +   VN   G++  Y +  + +
Sbjct: 123 RISEESPVGRQLMGRKKDETFVVNLENGKQVKYRVQDIEY 162


>gi|78223803|ref|YP_385550.1| GreA/GreB family elongation factor [Geobacter metallireducens
           GS-15]
 gi|78195058|gb|ABB32825.1| GreA/GreB family elongation factor [Geobacter metallireducens
           GS-15]
          Length = 142

 Score = 79.1 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 57/97 (58%)

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             + ELE+ + RAEV++   +  D I   + V L + +SG++ +Y +V   +A ++   +
Sbjct: 36  KHLRELEDELLRAEVVEPQDIPADVITMNSRVCLKDLDSGEELHYTLVFPGDARLEDNRI 95

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI +P+  AL+G  +GD I+   PGG +  ++ ++L+
Sbjct: 96  SILAPVGTALLGYRVGDTITWKVPGGTRRLKVKKILY 132


>gi|325277076|ref|ZP_08142731.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51]
 gi|324097783|gb|EGB95974.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51]
          Length = 165

 Score = 79.1 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 23/154 (14%)

Query: 5   IPVTSKGFDKIQQ---ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             VT+ G  ++Q+   EL   +            + +A G+  +       K+     E 
Sbjct: 28  NYVTASGLRQLQERVAELNALRS-----------DLQAQGERVD-------KQRLADTER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V+     S  ++  G+ V  V+         ++VG+ EAD   GL++
Sbjct: 70  DLRYFSARVQSAQVV-PPATSHSKVQIGSRVRFVDAQDQA-HEVRLVGEDEADAGRGLIN 127

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+ RAL+G   GD +    P GE   E+  V
Sbjct: 128 WGSPLGRALLGAGPGDEVVWQRPVGELVIEVTDV 161


>gi|66047490|ref|YP_237331.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258197|gb|AAY39293.1| Prokaryotic transcription elongation factor GreA/GreB [Pseudomonas
           syringae pv. syringae B728a]
          Length = 165

 Score = 79.1 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 72/152 (47%), Gaps = 17/152 (11%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT++G   +++ +   Q +    +  A+ EA               K+     E  + 
Sbjct: 28  NYVTAEGLTLLKKHVGSLQAQ--HSMQTALGEAAD-------------KQRLADLERDLR 72

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+V+  +  + +++  G+ V+  ++   +++   +VG+ +AD  +GL++  S
Sbjct: 73  YFNQRLQSAQVVAPAVST-EKVQIGSWVTFADEQ-DNRQRVHLVGEDQADAANGLINWGS 130

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+ RALIG + GD +    P G+++ E+L + 
Sbjct: 131 PLGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162


>gi|330937778|gb|EGH41648.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
           pisi str. 1704B]
 gi|330981878|gb|EGH79981.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 165

 Score = 78.7 bits (192), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 69/152 (45%), Gaps = 17/152 (11%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT++G   +++ +   Q +   +    + EA               K+     E  + 
Sbjct: 28  NYVTAEGLTMLKKHVSSLQAQHSTQTA--LGEAAD-------------KQRLADLERDLR 72

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+V+  +  + +++  G+ V+  ++   +++   +VG+ +AD   G ++  S
Sbjct: 73  YFNQRLQSAQVVAPAVST-EKVQIGSWVTFADEQ-DNQQRVHLVGEDQADAAKGQINWGS 130

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+ RALIG + GD +    P G+++ E+L + 
Sbjct: 131 PLGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162


>gi|154499214|ref|ZP_02037592.1| hypothetical protein BACCAP_03209 [Bacteroides capillosus ATCC
           29799]
 gi|150272054|gb|EDM99280.1| hypothetical protein BACCAP_03209 [Bacteroides capillosus ATCC
           29799]
          Length = 163

 Score = 78.7 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 5/145 (3%)

Query: 13  DKIQQELR--WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
             ++ EL     + +E     +    A A GD SENAE+Q A +        +  L N +
Sbjct: 21  RNLRTELESVQLRLKEEQDAAQR---ASAMGDRSENAEWQIANDNIARYTVSIMSLVNTL 77

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
              +    S     ++  G+T+ +V++        +I      + + G +S ++P+  A+
Sbjct: 78  DTYKKFSASYTPTGKVMVGSTLKVVDRRHNSTLYIKIYPAGLGNAKIGAISTATPLGSAV 137

Query: 131 IGKELGDIISVNAPGGEKTYEILQV 155
           +GK  G  + V AP G+  Y I +V
Sbjct: 138 LGKTAGTEVIVKAPLGDIPYYIEEV 162


>gi|197123173|ref|YP_002135124.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
 gi|196173022|gb|ACG73995.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
          Length = 149

 Score = 78.3 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 2/119 (1%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M      +T +GF ++  E      E RPRI+  +  A A GD SENAEY   K+     
Sbjct: 1   MSRTPRYITPEGFRRLAAEHARIWTELRPRIVAEVEAAAALGDRSENAEYIYGKKKLREL 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           + R+  L   +    V++       R  FGA V++ E+  G ++  ++VG  E DV +G
Sbjct: 61  DRRLRFLSEKMDSLSVVEPRAHPDGRAFFGAWVTV-EQEDGQERRVRLVGPDEFDVAAG 118


>gi|330969544|gb|EGH69610.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 165

 Score = 78.3 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 72/152 (47%), Gaps = 17/152 (11%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT++G   +++ +   Q +    +  A+ EA               K+     E  + 
Sbjct: 28  NYVTAEGLTLLKKHVGSLQAQ--HSMQTALGEAAD-------------KQRLADLERDLR 72

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+V+  +  + +++  G+ V+  ++   +++   +VG+ +AD  +GL++  S
Sbjct: 73  YFNQRLQSAQVVAPAVST-EKVQIGSWVTFADEE-DNRQRVHLVGEDQADAANGLINWGS 130

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+ RALIG + GD +    P G+++ E+L + 
Sbjct: 131 PLGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162


>gi|311746267|ref|ZP_07720052.1| transcription elongation factor GreA [Algoriphagus sp. PR1]
 gi|126576500|gb|EAZ80778.1| transcription elongation factor GreA [Algoriphagus sp. PR1]
          Length = 166

 Score = 78.3 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 15/153 (9%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G +++Q E +   +E+                    A  Q  +   N    ++ 
Sbjct: 29  NYVTETGMEELQAEKQALIEEKSNLTA---------------ATEQEKRIASNFISAKIK 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L+  I  A+++D+S    + I FGA V+L    S     YQ+VG  EAD+    +S  S
Sbjct: 74  LLDERIATAKIVDLSEQPKNEIRFGAKVTLKIGKSPKAMTYQLVGVDEADISKNKISFIS 133

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           PIA  LIGK++G+  +++   G++ +E++++ +
Sbjct: 134 PIAMILIGKKVGEKATLSLTKGDRVFEVMEIKY 166


>gi|330895488|gb|EGH27800.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 165

 Score = 78.3 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 69/152 (45%), Gaps = 17/152 (11%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT++G   +++ +   Q +   +    + EA               K+     E  + 
Sbjct: 28  NYVTAEGLTMLKKHVSGLQAQHSTQTA--LGEAAD-------------KQRLADLERDLR 72

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+V+  +  + +++  G+ V+  ++   +++   +VG+ +AD   G ++  S
Sbjct: 73  YFNQRLQSAQVVAPAVST-EKVQIGSWVTFADEQ-DNQQRVHLVGEDQADAAKGQINWGS 130

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+ RALIG + GD +    P G+++ E+L + 
Sbjct: 131 PLGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 162


>gi|150377254|ref|YP_001313849.1| transcription elongation factor regulatory protein [Sinorhizobium
           medicae WSM419]
 gi|150031801|gb|ABR63916.1| GreA/GreB family elongation factor [Sinorhizobium medicae WSM419]
          Length = 160

 Score = 78.3 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 45/151 (29%), Positives = 75/151 (49%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT +G   ++ +L+                AR   D +   E    +  Q  N  R  
Sbjct: 29  NLVTEEGLKALESQLKQ---------------AREAYDATSTIEDVNERRRQAANPLRDM 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                  R   +    +S D +AFG+TV+   ++ G  ++Y+IVG+ EAD +SG +S +S
Sbjct: 74  RYFAERVRTAQLVPGPVSFDAVAFGSTVTFS-RDDGRVQSYRIVGEDEADPRSGSISYAS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+ARAL+GK +GD++SV    G++  E+L +
Sbjct: 133 PVARALMGKAVGDVVSV----GDQELEVLAI 159


>gi|295134424|ref|YP_003585100.1| GreA-like transcription elongation factor [Zunongwangia profunda
           SM-A87]
 gi|294982439|gb|ADF52904.1| GreA-like transcription elongation factor [Zunongwangia profunda
           SM-A87]
          Length = 166

 Score = 77.9 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 15/153 (9%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G++ +++E R  + E      +  +E+R                 + + +G++ 
Sbjct: 29  NYVTPFGYEALEKEQRDLESERANTTSENETESR---------------RAKAVIDGKLK 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L      A +I  +    D + FGA V L    +   + +QIVG  EA+V+   ++  +
Sbjct: 74  LLAERRASARIIHPNQQPDDEVRFGAHVKLKNHTANSIQQFQIVGVDEANVKQQKIAFVA 133

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           PIA+A+ G ++G+          +  EIL + +
Sbjct: 134 PIAKAVTGLKVGEKAEFKLGTETRILEILDITY 166


>gi|289168331|ref|YP_003446600.1| transcription elongation factor related to GreA [Streptococcus
           mitis B6]
 gi|288907898|emb|CBJ22738.1| transcription elongation factor related to GreA [Streptococcus
           mitis B6]
          Length = 150

 Score = 77.1 bits (188), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 1   MVDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M +K   +T    +K+++EL   +   RP +++ I  AR+YGDLSEN+EY+AAK+ Q   
Sbjct: 1   MAEKTYPMTLAEKEKLEKELEELKLVRRPEVVERIKIARSYGDLSENSEYEAAKDEQAFV 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           EG+++ LE  I  AE+++  +++ D +A G TV++ E    +++ Y IVG   AD  +G 
Sbjct: 61  EGQISSLETKIRYAEIVNSDSVAQDEVAIGKTVTIQEIGEDEEEVYIIVGSAGADAFAGK 120

Query: 120 VSISSPIARALIGKE 134
           VS  SPI +AL+ ++
Sbjct: 121 VSNESPIGQALLARK 135


>gi|27382335|ref|NP_773864.1| transcription elongation factor regulatory protein [Bradyrhizobium
           japonicum USDA 110]
 gi|27355506|dbj|BAC52489.1| transcription elongation factor [Bradyrhizobium japonicum USDA 110]
          Length = 162

 Score = 77.1 bits (188), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 22/152 (14%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE-GRM 63
             VT  G   +Q +L            +A   A+A  D++E       K  Q+       
Sbjct: 29  NLVTEAGLQALQTQL--------QEAREAYEAAQAIDDVNE-------KRRQSAVPLRDA 73

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A+VI  +  S D +AFG+TV+   +  G  + Y+IVG+ EAD ++G +S  
Sbjct: 74  RYLTERLRTAQVI-PTPASTDTVAFGSTVTFS-RPDGRVQTYRIVGEDEADPKAGSISFV 131

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+AR+LIGK +GD++      G +  EIL +
Sbjct: 132 SPVARSLIGKAVGDVV----GAGTQEIEILSI 159


>gi|307140091|ref|ZP_07499447.1| transcription elongation factor GreB [Escherichia coli H736]
          Length = 93

 Score = 77.1 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 49/87 (56%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
          +    VT +G++K++QEL +  +EERP + K ++ A + GD SENA+YQ  K+     + 
Sbjct: 1  MKTPLVTREGYEKLKQELNYLWREERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDR 60

Query: 62 RMAELENIITRAEVIDISTMSGDRIAF 88
          R+  L   +   +++D S     ++ F
Sbjct: 61 RVRYLTKCLENLKIVDYSPQQEGKVFF 87


>gi|296447424|ref|ZP_06889349.1| GreA/GreB family elongation factor [Methylosinus trichosporium
           OB3b]
 gi|296255044|gb|EFH02146.1| GreA/GreB family elongation factor [Methylosinus trichosporium
           OB3b]
          Length = 155

 Score = 77.1 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 24/152 (15%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VT +G  +I+ EL   Q E          +A   GD          K +       +
Sbjct: 27  RNLVTPEGLAQIEAELARLQSEL---------DAAQQGDD---------KHVLARVTRDL 68

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                    AE++        ++ FG  V + ++  G +++Y++VG+ EAD   GL+   
Sbjct: 69  RYWNARRASAELVHA-IADVGQVRFGHRVVVEDEK-GQRRSYRLVGEDEADPSKGLIPYV 126

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +P+A+ L+GK +GD   V    G  +  IL +
Sbjct: 127 APLAKELLGKSVGDSAEV----GRHSATILDI 154


>gi|254669933|emb|CBA04519.1| transcription elongation factor GreA [Neisseria meningitidis
           alpha153]
          Length = 72

 Score = 77.1 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/72 (50%), Positives = 50/72 (69%)

Query: 87  AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
            FG TV+L +  + +   YQIVG+ EAD++ G + + SPIARALIGKE GD   V APGG
Sbjct: 1   MFGTTVTLEDLETEEHVTYQIVGEDEADIKQGKIYVGSPIARALIGKEEGDTAEVQAPGG 60

Query: 147 EKTYEILQVLWI 158
            + Y+I++V +I
Sbjct: 61  VREYDIIEVRYI 72


>gi|91774873|ref|YP_544629.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
 gi|91708860|gb|ABE48788.1| GreA/GreB family elongation factor [Methylobacillus flagellatus KT]
          Length = 138

 Score = 77.1 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 53/97 (54%)

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             +A LE+ + R+E +    +  D +   + V L ++ +G + +  +V   +AD  +  +
Sbjct: 32  DNLARLEDELARSEEVPSEQVGADVVTMNSRVLLRDEANGHEMSCTLVFPSDADASANRI 91

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+ +P+  A++G  +GD+I    PGG + Y IL++ +
Sbjct: 92  SVVAPLGTAILGYRVGDVIDWAMPGGVRQYRILKIDY 128


>gi|146294887|ref|YP_001185311.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32]
 gi|145566577|gb|ABP77512.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32]
          Length = 114

 Score = 76.7 bits (187), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 1/103 (0%)

Query: 55  LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
           +    + R+  L   +   +++D S     +I FGA   L       +  Y+IVG  E D
Sbjct: 1   MLRQIDSRVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELENDAGE-RVRYRIVGKDELD 59

Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            + G ++I SP+ARALIGK++ D + V  P G K + I ++ +
Sbjct: 60  TKLGYITIDSPMARALIGKQVDDEVVVQTPSGPKEWYINEIRY 102


>gi|302039171|ref|YP_003799493.1| transcription elongation factor, greA/greB family [Candidatus
           Nitrospira defluvii]
 gi|300607235|emb|CBK43568.1| Transcription elongation factor, greA/greB family [Candidatus
           Nitrospira defluvii]
          Length = 138

 Score = 76.0 bits (185), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 30/155 (19%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            +I +T     +++  LR R               R + +  EN                
Sbjct: 4   REIYITEFDLARLRDVLRARTSVGARD--------RDHLESLEN---------------- 39

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
                  + RA V+D S +  D +   + V + +  +G +  Y +V   +A +Q   +SI
Sbjct: 40  ------ELDRAHVVDPSAVPHDVVTMNSQVRIEDVETGAENVYTLVFPSDAGIQEKKLSI 93

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +PI  AL+G   G+ +  + P G +T  I +VL+
Sbjct: 94  LAPIGTALLGARAGETVDWSVPAGVRTVRIKEVLY 128


>gi|149378117|ref|ZP_01895837.1| transcription elongation factor GreB [Marinobacter algicola DG893]
 gi|149357602|gb|EDM46104.1| transcription elongation factor GreB [Marinobacter algicola DG893]
          Length = 108

 Score = 76.0 bits (185), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 1/102 (0%)

Query: 56  QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
               + R+  L   +    V+D       ++ FGA V++ E   GD+  Y++VG  E D+
Sbjct: 1   MREIDRRVRFLTKRLDELTVVDRLPDDRGKMFFGAWVTI-ESEDGDESTYRLVGPDEFDL 59

Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             G +SI SP+ARAL+GK + D + V  P G     I  + +
Sbjct: 60  SRGYLSIDSPMARALLGKRIDDEVGVRTPDGWNHVVITNIHY 101


>gi|330873471|gb|EGH07620.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 165

 Score = 76.0 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 67/155 (43%), Gaps = 17/155 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
                VT+ G   +++ +   Q +   +    + EA               K+     E 
Sbjct: 25  AKTNYVTAYGLTLLKEHVSSLQAQHSAQNA--LGEATD-------------KQRLADLER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V+  +  + +++  G+ ++  ++     +  Q+VG+ +AD   GL++
Sbjct: 70  DLRYFTQRLQSAQVVAPALST-EKVQIGSWITFTDEEDNH-QRVQLVGEDQADATRGLIN 127

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+  AL+G + GD +    P G++T E+L + 
Sbjct: 128 WGSPLGSALLGAQKGDEVMWKRPAGDQTIEVLLIE 162


>gi|325142644|gb|EGC65035.1| transcription elongation factor greA [Neisseria meningitidis
          961-5945]
          Length = 72

 Score = 76.0 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/72 (51%), Positives = 56/72 (77%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
          + KIP+T +G + ++QEL+  +   RP +I+AI+EAR++GDLSENAEY+AAKE Q   EG
Sbjct: 1  MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHGDLSENAEYEAAKERQGFIEG 60

Query: 62 RMAELENIITRA 73
          R++ELE+ ++ A
Sbjct: 61 RISELEHKLSVA 72


>gi|289610114|emb|CBI60320.1| unnamed protein product [Sordaria macrospora]
          Length = 108

 Score = 76.0 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 65  ELENIITRAEVIDIS-TMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            L   +  A V+D +      R  FGATV++ +++   +   ++VGD EAD   G +  +
Sbjct: 15  FLAKRMKAARVVDPAAQTERGRAWFGATVTIADEDDNHR-TLELVGDDEADAGKGRIGWN 73

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SP+ARAL G  +GD+ +V  P G K YE++ + +
Sbjct: 74  SPMARALRGSAVGDVRTVALPAGAKEYEVMAIAY 107


>gi|210610359|ref|ZP_03288364.1| hypothetical protein CLONEX_00554 [Clostridium nexile DSM 1787]
 gi|210152509|gb|EEA83515.1| hypothetical protein CLONEX_00554 [Clostridium nexile DSM 1787]
          Length = 103

 Score = 76.0 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/99 (38%), Positives = 59/99 (59%)

Query: 57  NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
              E R+ E+E I+  AEV+    +  D+I  G TVSL +    ++  Y+IVG  EA+  
Sbjct: 1   RDIEARIEEIEKILKNAEVVVEDEVDFDKINVGCTVSLYDVEFEEEVEYKIVGSTEANSL 60

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +G +S  SP+ +ALIGK++GD + V A  G   YE+L++
Sbjct: 61  AGKISNESPLGKALIGKKVGDKVEVEAQAGIIEYEVLKI 99


>gi|316932410|ref|YP_004107392.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           DX-1]
 gi|315600124|gb|ADU42659.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           DX-1]
          Length = 134

 Score = 76.0 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 9/134 (6%)

Query: 23  QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
            + +RP I     +A   G L+E     AA+      E     L   + RA V   S   
Sbjct: 5   IRTQRPPITLRSRDAERLGQLAE----VAAQRYPATAE----FLAGEVARASVAPDSAPL 56

Query: 83  GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
              +   + ++  +  +G +K+  +V   EADV++G +SI +PI  ALIG  +G  IS  
Sbjct: 57  PGIVCMESALTFRDDTTGKEKHVTLVYPTEADVEAGRISILTPIGAALIGLSVGQSISFE 116

Query: 143 APGGE-KTYEILQV 155
            P GE ++  +L V
Sbjct: 117 TPSGERRSLTVLSV 130


>gi|115265559|dbj|BAF32821.1| transcription elongation factor [Pseudomonas syringae pv.
           actinidiae]
 gi|330965293|gb|EGH65553.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 165

 Score = 75.6 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 67/155 (43%), Gaps = 17/155 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
                VT+ G   +++ +   Q +   +    + EA               K+     E 
Sbjct: 25  AQTNYVTAYGLTLLKEHVGSLQAQHSAQNA--LGEATD-------------KQRLADLER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +      +  A+V+  +  + +++  G+ ++  ++     +  Q+VG+ +AD   GL++
Sbjct: 70  DLRYFTQRLQSAQVVAPALST-EKVQIGSWITFTDEEDNH-QRVQLVGEDQADATRGLIN 127

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             SP+  AL+G + GD +    P G++T E+L + 
Sbjct: 128 WGSPLGSALLGAQKGDEVMWKRPAGDQTIEVLLIE 162


>gi|220922797|ref|YP_002498099.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS
           2060]
 gi|219947404|gb|ACL57796.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS
           2060]
          Length = 153

 Score = 75.6 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 26/150 (17%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VT +G   I+ EL     E                           K   +     +   
Sbjct: 30  VTPQGLALIEAELERLHAEHAALSPDD-------------------KANLSRTSRDLRYW 70

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
                 A+VI+ +    D + FG+TV++ E+  G +  Y IVG+ EAD   G ++  +P+
Sbjct: 71  TARRNSAQVIEPTPG--DTVHFGSTVTV-EREDGTRLTYHIVGEDEADPAKGSIAYVAPL 127

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
           ARAL GK+ GD+++V     +   EI++V 
Sbjct: 128 ARALTGKQAGDVVTVA----DHEVEIIEVR 153


>gi|188583529|ref|YP_001926974.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001]
 gi|179347027|gb|ACB82439.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001]
          Length = 154

 Score = 75.2 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 61/152 (40%), Gaps = 25/152 (16%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT +G  +I+ E+   +          +S      D          K         + 
Sbjct: 28  NYVTPEGLARIEAEVARLE--------AELSGLSPQQD----------KADHARLSRDLR 69

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                   AE+++       R     TV   +     ++ ++IVG+ EAD  +G +S  +
Sbjct: 70  YWSARKNSAELVEAFEGDTVRFGATVTVLREDDT---RQTFRIVGEDEADPATGSISYVA 126

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+ARAL GK +GD ++VN    +  +EI ++ 
Sbjct: 127 PLARALTGKGVGDTVTVN----DHEFEIAEIR 154


>gi|170750231|ref|YP_001756491.1| GreA/GreB family elongation factor [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656753|gb|ACB25808.1| GreA/GreB family elongation factor [Methylobacterium radiotolerans
           JCM 2831]
          Length = 157

 Score = 75.2 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 24/151 (15%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VT +G  +I+ E+   ++E             A  D ++ AE        +     +   
Sbjct: 30  VTPEGLAQIEAEVARLEKEV------------ASLDPADKAED-------SRIGRDLRYW 70

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKN-SGDKKNYQIVGDQEADVQSGLVSISSP 125
                 A++++       +     TV   +++    ++ ++IVG+ EAD   G +S  +P
Sbjct: 71  AARKNTAQLVEPKGGDTVQFGSTVTVVREDESGKETRQTFRIVGEDEADPHKGSISYVAP 130

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +ARA+ GK +GD++ VN        E+L++ 
Sbjct: 131 LARAITGKTIGDVVEVN----GHEVEVLEIR 157


>gi|255035431|ref|YP_003086052.1| GreA/GreB family elongation factor [Dyadobacter fermentans DSM
           18053]
 gi|254948187|gb|ACT92887.1| GreA/GreB family elongation factor [Dyadobacter fermentans DSM
           18053]
          Length = 134

 Score = 74.8 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 51/108 (47%)

Query: 50  QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
           Q A+   + N      L   + RA V++ + +    I   + V + E  +  +  + IV 
Sbjct: 20  QFAQTFPDNNSSETMSLAYELNRAVVVEDNELPAGSIRLNSYVKVRETTTNKEMAFSIVM 79

Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            ++AD+    +SI +P+  ALIG   G+ +    P G + ++IL V +
Sbjct: 80  PKDADIAKQRISILTPMGAALIGLCKGETVEWKMPAGIRRFKILDVWY 127


>gi|134299378|ref|YP_001112874.1| GreA/GreB family elongation factor [Desulfotomaculum reducens MI-1]
 gi|134052078|gb|ABO50049.1| GreA/GreB family elongation factor [Desulfotomaculum reducens MI-1]
          Length = 137

 Score = 74.8 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 66/157 (42%), Gaps = 30/157 (19%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +TS   +++++       +E                          KE    ++
Sbjct: 1   MERKIYITSADKERLEK----LIIKE--------------------------KEFNPASK 30

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             +  LE  +  A+V+    +  D I   + V L + ++ ++  Y +V   +AD+    +
Sbjct: 31  EYLKSLEEELKLAQVVPSKEIPQDVITMNSKVLLKDLDADEELTYSLVYPADADLLEDKI 90

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI +P+  A++G  +GD+++   P G    ++  +L+
Sbjct: 91  SILAPVGTAILGYRVGDVVNWKVPDGVVQLKVENILY 127


>gi|39933943|ref|NP_946219.1| putative nucleoside diphosphate kinase regulator [Rhodopseudomonas
           palustris CGA009]
 gi|192289362|ref|YP_001989967.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           TIE-1]
 gi|39647790|emb|CAE26310.1| putative nucleoside diphosphate kinase regulator [Rhodopseudomonas
           palustris CGA009]
 gi|192283111|gb|ACE99491.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           TIE-1]
          Length = 134

 Score = 74.8 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)

Query: 23  QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
            + +RP I     +A   G L+E     AA+      +     L   + RA V       
Sbjct: 5   IRTQRPPITIRSRDAERLGQLAE----AAAQRYPATAD----FLAGEVARANVAPDHDPL 56

Query: 83  GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
              +   + ++  +  +G +K+  +V   EADV++G +S+ +PI  ALIG  +G  IS  
Sbjct: 57  PGIVCMESALTFRDDTTGKEKHVTLVYPTEADVEAGRISVLTPIGAALIGLSVGQSISFE 116

Query: 143 APGGE-KTYEILQV 155
            P GE ++  +L V
Sbjct: 117 TPSGERRSLTVLSV 130


>gi|15806968|ref|NP_295693.1| transcription elongation factor [Deinococcus radiodurans R1]
 gi|6459759|gb|AAF11523.1|AE002035_6 transcription elongation factor [Deinococcus radiodurans R1]
          Length = 161

 Score = 74.4 bits (181), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             ++ +T +GF+++++ L   +Q       + + E       +E+   + AK  +   E 
Sbjct: 4   TKQVRLTREGFERLEKALEQ-EQNRLNEATRILQEQMETSADNEDTGLEDAKREKMNIEA 62

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--- 118
           R+ ELE+ + RA +I+       R+  GA V L  + S      Q+V   EA +  G   
Sbjct: 63  RIDELEDTLARATLIEDQENG-GRVELGAIVQLSNETSKKDMKVQVVSAAEAAMVGGSIT 121

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
            +S  SP+ R L+G++ G+   V   GG+   Y++  + +
Sbjct: 122 RISEESPVGRELMGRKKGESFVVTLEGGKQMKYKVKGIEY 161


>gi|39995838|ref|NP_951789.1| nucleoside diphosphate kinase regulator protein [Geobacter
           sulfurreducens PCA]
 gi|39982602|gb|AAR34062.1| nucleoside diphosphate kinase regulator protein, putative
           [Geobacter sulfurreducens PCA]
 gi|307634737|gb|ADI83574.2| RNA polymerase-binding protein Rnk [Geobacter sulfurreducens KN400]
          Length = 142

 Score = 74.4 bits (181), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 58/101 (57%)

Query: 57  NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
           + +   + ELE+ + RAEV++   +  D +   + V+L +  +G++  Y++V   +A ++
Sbjct: 32  SRDSRHLQELEDELLRAEVVEPQQIPADVVTMNSRVALKDLATGEEMVYELVFPSDARLE 91

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
              +SI +P+  AL+G   GD I+   PGG +  +I ++L+
Sbjct: 92  ENRISILAPVGTALLGYRAGDTITWKVPGGTRKIKITKILY 132


>gi|237801440|ref|ZP_04589901.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024299|gb|EGI04356.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 116

 Score = 74.4 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 48  EYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107
                K+     E  +      +  A+V+  +  + D++  G+ V+  +++  +++   +
Sbjct: 7   GDDFDKQRLADIERDLRYFNQRLQSAQVVAPAVST-DKVQIGSWVTFADED-DNRQRVHL 64

Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           VG+ +AD  +GL++  SP+ RALIG   GD +    P G+ + E+L + 
Sbjct: 65  VGEDQADAANGLINWGSPLGRALIGARQGDEVVWQRPAGDLSIEVLLIE 113


>gi|218512591|ref|ZP_03509431.1| transcription elongation factor GreA [Rhizobium etli 8C-3]
          Length = 106

 Score = 74.4 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 59/83 (71%), Positives = 72/83 (86%)

Query: 7  VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
          +T  GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLSENAEY AAKE Q+ NEGR+ EL
Sbjct: 1  MTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLSENAEYHAAKEAQSHNEGRITEL 60

Query: 67 ENIITRAEVIDISTMSGDRIAFG 89
          E++  RAEVID++ MSGD+I FG
Sbjct: 61 EDLTARAEVIDLTKMSGDKIKFG 83


>gi|260566855|ref|ZP_05837325.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
           suis bv. 4 str. 40]
 gi|260156373|gb|EEW91453.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
           suis bv. 4 str. 40]
          Length = 156

 Score = 74.0 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 23/153 (15%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VT  G  +I  EL   Q          +SEA   G+ S                  +
Sbjct: 25  RNLVTPAGLKQIDDELARLQH--------DLSEANIAGERS----------AVARISRDL 66

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                    AE+   +  S   + FG TV L   + G  + + IVG+ EAD   G +S  
Sbjct: 67  RYWMARRETAELSVPAPDSH-VVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHV 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +P++  L GK +GD++ +    G   +EI+ + 
Sbjct: 126 APVSILLFGKPVGDVVKI---NGT-EWEIVSLK 154


>gi|86132956|ref|ZP_01051546.1| transcription elongation factor GreA/GreB family protein [Dokdonia
           donghaensis MED134]
 gi|85816474|gb|EAQ37662.1| transcription elongation factor GreA/GreB family protein [Dokdonia
           donghaensis MED134]
          Length = 167

 Score = 74.0 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 16/154 (10%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VTS G  ++++EL     +                 L E  E    +    +  G+  
Sbjct: 29  NYVTSHGLTQLKEELSTLDNK--------------ISTLDETDER-ERRRALAVLNGKRN 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   I  A ++D        I FGATV+            QIVG  EA V+   ++ ++
Sbjct: 74  LLLERIQSARLLD-HIKDEGEIRFGATVTYTIAGMPKPITIQIVGVDEASVKDKKIAFTA 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           PIARALIGK++ +  +      EK   I  + ++
Sbjct: 133 PIARALIGKKVDETTTFQLGNEEKKLTIKNIAYV 166


>gi|23501445|ref|NP_697572.1| transcription elongation factor GreA domain-containing protein
           [Brucella suis 1330]
 gi|161618529|ref|YP_001592416.1| transcription elongation factor GreA [Brucella canis ATCC 23365]
 gi|254703897|ref|ZP_05165725.1| transcription elongation factor GreA [Brucella suis bv. 3 str. 686]
 gi|261754547|ref|ZP_05998256.1| GreA/GreB family elongation factor [Brucella suis bv. 3 str. 686]
 gi|23347347|gb|AAN29487.1| transcription elongation factor GreA domain protein [Brucella suis
           1330]
 gi|161335340|gb|ABX61645.1| Transcription elongation factor greA [Brucella canis ATCC 23365]
 gi|261744300|gb|EEY32226.1| GreA/GreB family elongation factor [Brucella suis bv. 3 str. 686]
          Length = 156

 Score = 74.0 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 61/153 (39%), Gaps = 23/153 (15%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VT  G  +I  EL   Q          ++EA   G+ S                  +
Sbjct: 25  RNLVTPAGLKQIDDELARLQH--------DLAEANIAGERS----------AVARISRDL 66

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                    AE+   +  S   + FG TV L   + G  + + IVG+ EAD   G +S  
Sbjct: 67  RYWMARRETAELSVPAPDSH-VVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHV 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +P++  L GK +GD++ +    G   +EI+ + 
Sbjct: 126 APVSILLFGKPVGDVVKI---NGT-EWEIVSLK 154


>gi|254467874|ref|ZP_05081280.1| GreA/GreB family elongation factor [beta proteobacterium KB13]
 gi|207086684|gb|EDZ63967.1| GreA/GreB family elongation factor [beta proteobacterium KB13]
          Length = 164

 Score = 74.0 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 16/153 (10%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G  ++++ +   + E        I   +   D  EN      K+ +   E  + 
Sbjct: 28  NYVTPNGHKQLKETIHLIETE--------IKSIKELEDSPEN------KQNKMKLERDLR 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                   A +ID      +++ FGA V L+++N      +QIVG+ EAD++   +S  S
Sbjct: 74  YYLKRFETAILID-KHEENNKVLFGAHVILIDENDEA-YKFQIVGEDEADIKQNKLSYVS 131

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+A+ LIG  +GD +      G +   I  + +
Sbjct: 132 PLAKELIGSLIGDEVVWKRADGNRVVFIDSINY 164


>gi|207110701|ref|ZP_03244863.1| transcription elongation factor GreA [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 84

 Score = 74.0 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/84 (44%), Positives = 56/84 (66%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
          ++K P++  G++KI  EL+  ++ ERP I+K I  AR +GDL ENAEY AAKE Q   E 
Sbjct: 1  MNKEPMSMHGYNKICAELKQLKEVERPNIVKEIDIARGHGDLKENAEYHAAKEKQRFIEA 60

Query: 62 RMAELENIITRAEVIDISTMSGDR 85
          R+ +L  I+  A+VID S ++ ++
Sbjct: 61 RIVDLSEIVANAQVIDPSVLAHNK 84


>gi|89897729|ref|YP_521216.1| hypothetical protein DSY4983 [Desulfitobacterium hafniense Y51]
 gi|219670878|ref|YP_002461313.1| GreA/GreB family elongation factor [Desulfitobacterium hafniense
           DCB-2]
 gi|89337177|dbj|BAE86772.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219541138|gb|ACL22877.1| GreA/GreB family elongation factor [Desulfitobacterium hafniense
           DCB-2]
          Length = 138

 Score = 73.7 bits (179), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 74/157 (47%), Gaps = 29/157 (18%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  KI +T+                +R R++K I++ R +G                 N+
Sbjct: 1   MSRKISITA---------------VDRERLLKLINKEREFGSAK--------------NK 31

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             + +LE+ +  A+V+    + G+ I   + + L +  +G++  Y +V  ++AD+    +
Sbjct: 32  DYLKDLEHELNGADVVPSEKIPGNAITMNSRILLKDLETGEETVYTLVYPEDADLLEDKI 91

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           SI +P+  A++G   GDII    PGG   +++ ++L+
Sbjct: 92  SILAPVGTAILGYLEGDIIDWKVPGGVVRFKVEKILY 128


>gi|114049370|ref|YP_739920.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
 gi|113890812|gb|ABI44863.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
          Length = 113

 Score = 73.7 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 56  QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
               + R+  L   +   +++D S     +I FGA   L  +    +  Y+IVG  E D 
Sbjct: 1   MRQIDSRVRYLVKRLEELKIVDYSPQQEGKIYFGAWFELENEAGE-RVRYRIVGKDELDT 59

Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           + G ++I SP+ARALIGK++ D + V  P G K + I  + +
Sbjct: 60  KLGYITIDSPMARALIGKQVDDEVVVQTPSGPKEWYINDIRY 101


>gi|325914289|ref|ZP_08176639.1| transcription elongation factor [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539544|gb|EGD11190.1| transcription elongation factor [Xanthomonas vesicatoria ATCC
           35937]
          Length = 172

 Score = 73.7 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA ++    + GD +   + +   ++  G++    +V   EADVQ G +S+ +P
Sbjct: 67  LSDELGRARLLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 126

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           +  AL+G  +G  I    P G +    +  V 
Sbjct: 127 VGSALLGLSVGQSIDWRTPDGRDLRLRVTAVQ 158


>gi|116749867|ref|YP_846554.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans
           MPOB]
 gi|116698931|gb|ABK18119.1| GreA/GreB family elongation factor [Syntrophobacter fumaroxidans
           MPOB]
          Length = 141

 Score = 73.7 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 52/97 (53%)

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             +  LE  + +AEV+    +  D +   + V + + ++G +  Y +V   EADV+   +
Sbjct: 35  KHLQVLEEELRKAEVVAARNIPRDTVTMNSKVRVKDLDTGIETIYHLVFPGEADVKQNRI 94

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S+ +PI  ALIG  +GD+I  N P G K   I ++L+
Sbjct: 95  SVLAPIGTALIGYAVGDVIQWNVPAGTKKLRIEEILY 131


>gi|223557977|gb|ACM90983.1| transcription elongation factor GreA [uncultured bacterium URE4]
          Length = 112

 Score = 73.7 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 58/102 (56%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
             Q L E ++A L+  +  A VID S +S D +   + V++   N+  K  +QIVG+ EA
Sbjct: 9   MRQGLLEVKIARLKEKVANARVIDESKLSADTVQLLSKVTVENMNAKMKMQFQIVGESEA 68

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           D   GL+S S+PI +AL+G   G+++    P G   ++IL +
Sbjct: 69  DFSKGLLSASTPIGKALMGHGKGEVVEAKVPSGIMKFKILDI 110


>gi|325109624|ref|YP_004270692.1| GreA/GreB family elongation factor [Planctomyces brasiliensis DSM
           5305]
 gi|324969892|gb|ADY60670.1| GreA/GreB family elongation factor [Planctomyces brasiliensis DSM
           5305]
          Length = 138

 Score = 73.7 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 68/156 (43%), Gaps = 32/156 (20%)

Query: 1   MVD--KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M +  +I VT +   +++  L                           + + AA   +  
Sbjct: 1   MANRKQIIVTREDHARLESLLA--------------------------SSFAAACSDRPH 34

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            +    EL+     A+V++   +  + +   +T+ + E  + + + Y +V  + AD+  G
Sbjct: 35  LQSLRGELDI----AQVVNSEEVPPNVVTMNSTIRMREVRTREMETYTLVYPERADIAEG 90

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
            +S+ +PI  A++G ++GDI+  N PGG   ++I +
Sbjct: 91  KLSVLAPIGTAILGYQVGDIVEWNVPGGTIRFKIEE 126


>gi|306842173|ref|ZP_07474842.1| transcription elongation factor GREB [Brucella sp. BO2]
 gi|306287760|gb|EFM59191.1| transcription elongation factor GREB [Brucella sp. BO2]
          Length = 156

 Score = 73.7 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 23/153 (15%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VT  G  +I  EL   Q          ++EA   G+ S                  +
Sbjct: 25  RNLVTPAGLKQIDDELARLQH--------DLAEANIAGERS----------AVARISRDL 66

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                    AE+   +  S D + FG TV L   + G  + + IVG+ EAD   G +S  
Sbjct: 67  RYWTARRETAELSVPAPDS-DVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHV 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +P++  L GK +GD++ +    G   +EI+ + 
Sbjct: 126 APVSILLFGKPVGDVVKI---NGT-EWEIVSLK 154


>gi|117619344|ref|YP_857300.1| regulator of nucleoside diphosphate kinase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560751|gb|ABK37699.1| regulator of nucleoside diphosphate kinase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 131

 Score = 73.7 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  + RAE+ + + M  D +   +TV     +SG++    +V  ++       +S+ +P
Sbjct: 29  LQEELDRAEMREPADMPPDVVTMNSTVRFKMPSSGNEFCLTLVYPKDVQGDESKISVLAP 88

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G ++GD I+   P G     EIL+V++
Sbjct: 89  VGSALLGLKVGDSIAWPGPAGRTIEVEILEVVY 121


>gi|226356455|ref|YP_002786195.1| transcription elongation factor [Deinococcus deserti VCD115]
 gi|226318445|gb|ACO46441.1| putative transcription elongation factor [Deinococcus deserti
           VCD115]
          Length = 162

 Score = 73.7 bits (179), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 12/164 (7%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS---ENAEYQAAKELQN 57
           M D + +T +G+++++Q L     +ER R+ + I+      D +   EN    AA+  Q 
Sbjct: 1   MPDAVQLTREGYERLEQSLE----KERQRLEETITSLANTVDDAMDLENRSLNAAQIGQE 56

Query: 58  LN--EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
               E R+ ELE+++ RA +++   +   ++A G+ V L +   G +   Q+V   E   
Sbjct: 57  RIAIEARILELEDVLARAVIVEEEDLPRGQVAVGSVVMLEDDKHGRQLQVQLVSAVEISA 116

Query: 116 QSG---LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +     VS  SP+ +AL+G+  G+   V    G   Y +  V 
Sbjct: 117 MTEGVTQVSDDSPVGKALMGRREGETFDVELEAGRVQYTVRSVT 160


>gi|289810362|ref|ZP_06540991.1| transcription elongation factor GreA [Salmonella enterica subsp.
          enterica serovar Typhi str. AG3]
          Length = 65

 Score = 73.3 bits (178), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 46/65 (70%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
          +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL ENAEY AA+E Q   EG
Sbjct: 1  MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKENAEYHAAREQQGFCEG 60

Query: 62 RMAEL 66
          R+ ++
Sbjct: 61 RIKDI 65


>gi|91202773|emb|CAJ72412.1| similar to regulator of nucleoside diphosphate kinase [Candidatus
           Kuenenia stuttgartiensis]
          Length = 139

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 1/117 (0%)

Query: 42  DLSENAEYQA-AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
           D S   E  A A+E    +   +A L   + RAEV+    +  D +   + V L + ++ 
Sbjct: 13  DKSRLEELIAVAEEFGGQDRKDLASLAEELERAEVVSSKDVPADVVTMNSKVVLRDLSTS 72

Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +K  Y +V  ++A++ +G +S+ +P+  A++G   GD++  + P G +   I  VL+
Sbjct: 73  EKMTYVLVFPKDANIAAGAISVLAPVGTAILGYAKGDVVEWSVPSGVRRIRIDDVLY 129


>gi|17987660|ref|NP_540294.1| transcription elongation factor GREB [Brucella melitensis bv. 1
           str. 16M]
 gi|148560110|ref|YP_001258556.1| transcription elongation factor GreA domain-containing protein
           [Brucella ovis ATCC 25840]
 gi|163842833|ref|YP_001627237.1| transcription elongation factor GreA [Brucella suis ATCC 23445]
 gi|225627062|ref|ZP_03785100.1| Transcription elongation factor greA [Brucella ceti str. Cudo]
 gi|225852085|ref|YP_002732318.1| Transcription elongation factor greA [Brucella melitensis ATCC
           23457]
 gi|254693324|ref|ZP_05155152.1| Transcription elongation factor greA [Brucella abortus bv. 3 str.
           Tulya]
 gi|254701352|ref|ZP_05163180.1| Transcription elongation factor greA [Brucella suis bv. 5 str. 513]
 gi|254707727|ref|ZP_05169555.1| Transcription elongation factor greA [Brucella pinnipedialis
           M163/99/10]
 gi|254709691|ref|ZP_05171502.1| Transcription elongation factor greA [Brucella pinnipedialis B2/94]
 gi|254712888|ref|ZP_05174699.1| Transcription elongation factor greA [Brucella ceti M644/93/1]
 gi|254716758|ref|ZP_05178569.1| Transcription elongation factor greA [Brucella ceti M13/05/1]
 gi|256031182|ref|ZP_05444796.1| Transcription elongation factor greA [Brucella pinnipedialis
           M292/94/1]
 gi|256044265|ref|ZP_05447169.1| Transcription elongation factor greA [Brucella melitensis bv. 1
           str. Rev.1]
 gi|256060689|ref|ZP_05450853.1| Transcription elongation factor greA [Brucella neotomae 5K33]
 gi|256113099|ref|ZP_05453976.1| Transcription elongation factor greA [Brucella melitensis bv. 3
           str. Ether]
 gi|256159272|ref|ZP_05457075.1| Transcription elongation factor greA [Brucella ceti M490/95/1]
 gi|256254589|ref|ZP_05460125.1| Transcription elongation factor greA [Brucella ceti B1/94]
 gi|256264405|ref|ZP_05466937.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
           melitensis bv. 2 str. 63/9]
 gi|256368997|ref|YP_003106503.1| transcription elongation factor GreA domain protein [Brucella
           microti CCM 4915]
 gi|260168317|ref|ZP_05755128.1| transcription elongation factor GreA domain protein [Brucella sp.
           F5/99]
 gi|260563619|ref|ZP_05834105.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
           melitensis bv. 1 str. 16M]
 gi|261213571|ref|ZP_05927852.1| GreA/GreB family elongation factor [Brucella abortus bv. 3 str.
           Tulya]
 gi|261218555|ref|ZP_05932836.1| GreA/GreB family elongation factor [Brucella ceti M13/05/1]
 gi|261221763|ref|ZP_05936044.1| GreA/GreB family elongation factor [Brucella ceti B1/94]
 gi|261315220|ref|ZP_05954417.1| GreA/GreB family elongation factor [Brucella pinnipedialis
           M163/99/10]
 gi|261317221|ref|ZP_05956418.1| GreA/GreB family elongation factor [Brucella pinnipedialis B2/94]
 gi|261320596|ref|ZP_05959793.1| GreA/GreB family elongation factor [Brucella ceti M644/93/1]
 gi|261324679|ref|ZP_05963876.1| GreA/GreB family elongation factor [Brucella neotomae 5K33]
 gi|261751889|ref|ZP_05995598.1| GreA/GreB family elongation factor [Brucella suis bv. 5 str. 513]
 gi|261757777|ref|ZP_06001486.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
           F5/99]
 gi|265988260|ref|ZP_06100817.1| GreA/GreB family elongation factor [Brucella pinnipedialis
           M292/94/1]
 gi|265990676|ref|ZP_06103233.1| GreA/GreB family elongation factor [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994508|ref|ZP_06107065.1| GreA/GreB family elongation factor [Brucella melitensis bv. 3 str.
           Ether]
 gi|265997727|ref|ZP_06110284.1| GreA/GreB family elongation factor [Brucella ceti M490/95/1]
 gi|294851925|ref|ZP_06792598.1| transcription elongation factor regulatory protein [Brucella sp.
           NVSL 07-0026]
 gi|17983373|gb|AAL52558.1| transcription elongation factor greb [Brucella melitensis bv. 1
           str. 16M]
 gi|148371367|gb|ABQ61346.1| transcription elongation factor GreA domain protein [Brucella ovis
           ATCC 25840]
 gi|163673556|gb|ABY37667.1| Transcription elongation factor greA [Brucella suis ATCC 23445]
 gi|225617897|gb|EEH14941.1| Transcription elongation factor greA [Brucella ceti str. Cudo]
 gi|225640450|gb|ACO00364.1| Transcription elongation factor greA [Brucella melitensis ATCC
           23457]
 gi|255999155|gb|ACU47554.1| transcription elongation factor GreA domain protein [Brucella
           microti CCM 4915]
 gi|260153635|gb|EEW88727.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
           melitensis bv. 1 str. 16M]
 gi|260915178|gb|EEX82039.1| GreA/GreB family elongation factor [Brucella abortus bv. 3 str.
           Tulya]
 gi|260920347|gb|EEX87000.1| GreA/GreB family elongation factor [Brucella ceti B1/94]
 gi|260923644|gb|EEX90212.1| GreA/GreB family elongation factor [Brucella ceti M13/05/1]
 gi|261293286|gb|EEX96782.1| GreA/GreB family elongation factor [Brucella ceti M644/93/1]
 gi|261296444|gb|EEX99940.1| GreA/GreB family elongation factor [Brucella pinnipedialis B2/94]
 gi|261300659|gb|EEY04156.1| GreA/GreB family elongation factor [Brucella neotomae 5K33]
 gi|261304246|gb|EEY07743.1| GreA/GreB family elongation factor [Brucella pinnipedialis
           M163/99/10]
 gi|261737761|gb|EEY25757.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
           F5/99]
 gi|261741642|gb|EEY29568.1| GreA/GreB family elongation factor [Brucella suis bv. 5 str. 513]
 gi|262552195|gb|EEZ08185.1| GreA/GreB family elongation factor [Brucella ceti M490/95/1]
 gi|262765621|gb|EEZ11410.1| GreA/GreB family elongation factor [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001460|gb|EEZ14035.1| GreA/GreB family elongation factor [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263094699|gb|EEZ18478.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
           melitensis bv. 2 str. 63/9]
 gi|264660457|gb|EEZ30718.1| GreA/GreB family elongation factor [Brucella pinnipedialis
           M292/94/1]
 gi|294820514|gb|EFG37513.1| transcription elongation factor regulatory protein [Brucella sp.
           NVSL 07-0026]
 gi|326408580|gb|ADZ65645.1| Transcription elongation factor greA [Brucella melitensis M28]
 gi|326538299|gb|ADZ86514.1| transcription elongation factor greA [Brucella melitensis M5-90]
          Length = 156

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 23/153 (15%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VT  G  +I  EL   Q          ++EA   G+ S                  +
Sbjct: 25  RNLVTPAGLKQIDDELARLQH--------DLAEANIAGERS----------AVARISRDL 66

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                    AE+   +  S D + FG TV L   + G  + + IVG+ EAD   G +S  
Sbjct: 67  RYWMARRETAELSVPAPDS-DVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHV 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +P++  L GK +GD++ +    G   +EI+ + 
Sbjct: 126 APVSILLFGKPVGDVVKI---NGT-EWEIVSLK 154


>gi|325928206|ref|ZP_08189414.1| transcription elongation factor [Xanthomonas perforans 91-118]
 gi|325541422|gb|EGD12956.1| transcription elongation factor [Xanthomonas perforans 91-118]
          Length = 157

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA V+    + GD +   + +   ++  G++    +V   EADVQ G +S+ +P
Sbjct: 52  LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 111

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQV 155
           +  AL+G  +G  I    P G +    +  V
Sbjct: 112 VGSALLGLSVGQSIDWRTPDGRDLRLRVTAV 142


>gi|294626142|ref|ZP_06704749.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292599591|gb|EFF43721.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 146

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA V+    + GD +   + +   ++  G++    +V   EADVQ G +S+ +P
Sbjct: 41  LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 100

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQV 155
           +  AL+G  +G  I    P G +    +  V
Sbjct: 101 VGSALLGLSVGQSIDWRTPDGRDLRLRVTAV 131


>gi|289670900|ref|ZP_06491975.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 143

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA V+    + GD +   + +   ++  G++    +V   EADVQ G +S+ +P
Sbjct: 41  LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 100

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQV 155
           +  AL+G  +G  I    P G +    +  V
Sbjct: 101 VGSALLGLSVGQSIDWRTPDGRDLRLRVTAV 131


>gi|289663515|ref|ZP_06485096.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 143

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA V+    + GD +   + +   ++  G++    +V   EADVQ G +S+ +P
Sbjct: 41  LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 100

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQV 155
           +  AL+G  +G  I    P G +    +  V
Sbjct: 101 VGSALLGLSVGQSIDWRTPDGRDLRLRVTAV 131


>gi|78046496|ref|YP_362671.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78034926|emb|CAJ22571.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
          Length = 146

 Score = 73.3 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA V+    + GD +   + +   ++  G++    +V   EADVQ G +S+ +P
Sbjct: 41  LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 100

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQV 155
           +  AL+G  +G  I    P G +    +  V
Sbjct: 101 VGSALLGLSVGQSIDWRTPDGRDLRLRVTAV 131


>gi|28493647|ref|NP_787808.1| transcription elongation factor [Tropheryma whipplei str. Twist]
 gi|28476689|gb|AAO44777.1| transcription elongation factor [Tropheryma whipplei str. Twist]
          Length = 172

 Score = 72.9 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  ++ +    +  EL       R  I K I +AR+ GDL EN  Y AAKE Q   EGR+
Sbjct: 16  ETWLSKEAHSVLVVELEELVTTGRKEIAKRIEQARSEGDLRENGGYSAAKEEQARIEGRI 75

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSI 122
            +L++++  A V         R      V +  +  G ++ + +   + A   S    S 
Sbjct: 76  QQLQDLLRHARVGQAPK---ARGVVEPGVVVTARIGGSERRFLLGNREIAHTSSLATYSE 132

Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
           SS I +A++G + G  I   +P G      IL+V 
Sbjct: 133 SSAIGQAILGLKEGSEIECKSPTGALIKVAILKVE 167


>gi|170740603|ref|YP_001769258.1| GreA/GreB family elongation factor [Methylobacterium sp. 4-46]
 gi|168194877|gb|ACA16824.1| GreA/GreB family elongation factor [Methylobacterium sp. 4-46]
          Length = 153

 Score = 72.9 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 26/150 (17%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VT +G   I+ EL     E                           K         +   
Sbjct: 30  VTPQGLALIEAELERLHAEHAALSPDD-------------------KAGLARTNRDLRYW 70

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
                 A+VI+ +    D + FG+TV + E+  G ++ Y++VG+ EAD   G ++  +P+
Sbjct: 71  TARRNSAQVIEPTPG--DTVHFGSTVVV-EREDGSRQTYRVVGEDEADPARGSIAYVAPL 127

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
           ARAL GK  GD++ V     +   EI++V 
Sbjct: 128 ARALTGKLAGDVVRVA----DHDVEIIEVR 153


>gi|86751649|ref|YP_488145.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           HaA2]
 gi|86574677|gb|ABD09234.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           HaA2]
          Length = 134

 Score = 72.9 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 9/131 (6%)

Query: 26  ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
           +RP I+    +A   G L+E     AA+      +     L   + RA V          
Sbjct: 8   QRPPIVLRSRDAERLGQLAE----AAAQRHPATAD----FLAGEVARAAVTPDGEPLPGI 59

Query: 86  IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
           +   + ++  ++++G +K   +V   +ADV++G +S+ +PI  ALIG  +G  I+   P 
Sbjct: 60  VCMDSELTFRDESTGKEKQVTLVYPPDADVEAGRISVLTPIGAALIGLSVGQSITFETPS 119

Query: 146 GE-KTYEILQV 155
           GE ++  +L V
Sbjct: 120 GERRSLTVLSV 130


>gi|28572840|ref|NP_789620.1| transcription elongation factor GreA [Tropheryma whipplei TW08/27]
 gi|28410973|emb|CAD67358.1| transcription elongation factor GreA [Tropheryma whipplei TW08/27]
          Length = 162

 Score = 72.9 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  ++ +    +  EL       R  I K I +AR+ GDL EN  Y AAKE Q   EGR+
Sbjct: 6   ETWLSKEAHSVLVVELEELVTTGRKEIAKRIEQARSEGDLRENGGYSAAKEEQARIEGRI 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSI 122
            +L++++  A V         R      V +  +  G ++ + +   + A   S    S 
Sbjct: 66  QQLQDLLRHARVGQAPK---ARGVVEPGVVVTARIGGSERRFLLGNREIAHTSSLATYSE 122

Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
           SS I +A++G + G  I   +P G      IL+V 
Sbjct: 123 SSAIGQAILGLKEGSEIECKSPTGALIKVAILKVE 157


>gi|167947983|ref|ZP_02535057.1| Prokaryotic transcription elongation factor GreA/GreB [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 67

 Score = 72.9 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 52/66 (78%)

Query: 92  VSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYE 151
           + ++E ++ ++  +QIVGD EAD++SGL+S+SSPIARALIGK  GD +++  PGG + +E
Sbjct: 1   MDVIELDNNEEHTFQIVGDDEADIKSGLISVSSPIARALIGKAEGDEVNLETPGGLREFE 60

Query: 152 ILQVLW 157
           +L++ +
Sbjct: 61  VLEIRY 66


>gi|239831415|ref|ZP_04679744.1| Transcription elongation factor greA [Ochrobactrum intermedium LMG
           3301]
 gi|239823682|gb|EEQ95250.1| Transcription elongation factor greA [Ochrobactrum intermedium LMG
           3301]
          Length = 157

 Score = 72.9 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 23/151 (15%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VT  G   I+ E+   Q              R   D +   E  A           +
Sbjct: 26  RNLVTPTGLKMIEDEIARLQ--------------RELADANVAGERSAV----ARISRDL 67

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                    AE+   +  S D + FG TV L   + G  + + IVG+ EAD  +G +S  
Sbjct: 68  RYWTARRENAELSVPAADS-DVVRFGMTVELENLDDGKVRRWTIVGEDEADPSNGKISHV 126

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           +P+A  L GK +GD++ +N       +EIL 
Sbjct: 127 APVAILLFGKPVGDVVKIN----NVEWEILS 153


>gi|21107037|gb|AAM35791.1| regulator of nucleoside diphosphate kinase [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 138

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA V+    + GD +   + +   ++  G++    +V   EADVQ G +S+ +P
Sbjct: 33  LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 92

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQV 155
           +  AL+G  +G  I    P G +    +  V
Sbjct: 93  VGSALLGLSVGQRIDWRTPDGRDLRLRVTAV 123


>gi|77748553|ref|NP_641255.2| regulator of nucleoside diphosphate kinase [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 146

 Score = 72.9 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA V+    + GD +   + +   ++  G++    +V   EADVQ G +S+ +P
Sbjct: 41  LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 100

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQV 155
           +  AL+G  +G  I    P G +    +  V
Sbjct: 101 VGSALLGLSVGQRIDWRTPDGRDLRLRVTAV 131


>gi|307319133|ref|ZP_07598563.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
 gi|306895240|gb|EFN25996.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
          Length = 160

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G   +  EL              + +AR   D +   E    +  Q+    R  
Sbjct: 29  NLVTETGLKAL--ELH-------------LQQAREAFDATSTIEDVNERRRQSAGPLREL 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                  R   +     S D +AFG+TV+   ++ G  + Y+IVG+ EAD ++G +S  S
Sbjct: 74  RYFAERVRTAQLVPDPASFDVVAFGSTVTFS-RDDGRVQKYRIVGEDEADPKAGSISYVS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+AR L+GK +GD+ SV    G++  EIL +
Sbjct: 133 PVARVLMGKSVGDVASV----GDQELEILAI 159


>gi|118594647|ref|ZP_01551994.1| transcription elongation factor, putative [Methylophilales
           bacterium HTCC2181]
 gi|118440425|gb|EAV47052.1| transcription elongation factor, putative [Methylophilales
           bacterium HTCC2181]
          Length = 166

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 68/156 (43%), Gaps = 16/156 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            +   +T  G  +++  L     E +  ++                +   +K+ +   E 
Sbjct: 25  TEVNYITPNGLKQLKNILDTLDAERQTLML---------------LDDSMSKQKKMRIER 69

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +    + I  A +I     + +++ FGA + L ++    +  Y+IVG+ EAD+    +S
Sbjct: 70  DIRYYASRIKTAILIHPDKQAENKVLFGALIELEDEKGETES-YEIVGEDEADLALRKIS 128

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             SP+A++++G  LGD +++  P    T  I  + +
Sbjct: 129 YVSPLAKSVMGNSLGDEVTLIKPTATVTLTIKNITY 164


>gi|77359225|ref|YP_338800.1| regulator of nucleoside diphosphate kinase [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874136|emb|CAI85357.1| putative regulator of nucleoside diphosphate kinase
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 161

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 9/140 (6%)

Query: 19  LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDI 78
           ++  +  +RP II +  +A    DL E+    +             ELE  + RA ++D 
Sbjct: 20  IKDIELNKRPEIIISSLDADRLYDLIESLPANSF--------AGEKELEAELGRATIVDP 71

Query: 79  STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
             +    +   +TV+ V ++S ++ N  +V  ++ D     +SI +PI  AL+G   GD 
Sbjct: 72  KDVPATIVTMNSTVNFVVESSKEEFNLTLVYPKDLDASGQKISILAPIGGALLGLSQGDE 131

Query: 139 ISVNAP-GGEKTYEILQVLW 157
           I    P GG    +I +V +
Sbjct: 132 IEWPKPGGGLIKVKIKEVTY 151


>gi|289675905|ref|ZP_06496795.1| transcription elongation factor GreA/GreB [Pseudomonas syringae pv.
           syringae FF5]
          Length = 123

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 55/106 (51%), Gaps = 2/106 (1%)

Query: 51  AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
           A K+     E  +      +  A+V+  +  + +++  G+ V+  ++   +++   +VG+
Sbjct: 17  ADKQRLADLERDLRYFNQRLQSAQVVAPAVST-EKVQIGSWVTFADEQ-DNQQRVHLVGE 74

Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +AD   G ++  SP+ RALIG + GD +    P G+++ E+L + 
Sbjct: 75  DQADAAKGQINWGSPLGRALIGAQKGDEVLWQRPAGDQSIEVLLIE 120


>gi|306845170|ref|ZP_07477746.1| transcription elongation factor GREB [Brucella sp. BO1]
 gi|306274329|gb|EFM56136.1| transcription elongation factor GREB [Brucella sp. BO1]
          Length = 156

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 23/153 (15%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VT  G  +I  EL   Q          ++EA   G+ S                  +
Sbjct: 25  RNLVTPAGLKQIDDELVRLQH--------DLAEANIAGERS----------AVARISRDL 66

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                    AE+   +  S D + FG TV L   + G  + + IVG+ EAD   G +S  
Sbjct: 67  RYWMARRETAELSVPAPGS-DVVRFGMTVELENLDDGSTRCWTIVGEDEADPSRGKISHV 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +P++  L GK +GD++ +    G   +EI+ + 
Sbjct: 126 APVSILLFGKPVGDVVKI---NGT-EWEIVSLK 154


>gi|294665206|ref|ZP_06730505.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292605029|gb|EFF48381.1| regulator of nucleoside diphosphate kinase [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 146

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA V+    + GD +   + +   ++  G++    +V   EADVQ G +S+ +P
Sbjct: 41  LSDELGRARVLPPDQIPGDVVTMHSRIECEDQLHGERHTLTLVYPHEADVQHGRISVLAP 100

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQV 155
           +  AL+G  +G  I    P G +    +  V
Sbjct: 101 VGSALLGLSIGQSIDWRTPDGRDLRLRVTAV 131


>gi|114706677|ref|ZP_01439578.1| nucleoside diphosphate kinase regulator [Fulvimarina pelagi
           HTCC2506]
 gi|114538069|gb|EAU41192.1| nucleoside diphosphate kinase regulator [Fulvimarina pelagi
           HTCC2506]
          Length = 156

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/154 (25%), Positives = 61/154 (39%), Gaps = 24/154 (15%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            D   VT +G   I  EL     +         + AR   D          K        
Sbjct: 24  SDPNIVTPRGLKMIDDELEALNAQR--------ATAREAKD----------KVALATIHR 65

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            M         A+++           FG  V++ E++ G K+++ IVG  EAD + G +S
Sbjct: 66  DMRYWNARRATAKLVKPDQNPQTV-QFGTRVTI-ERDDGQKQSFTIVGIDEADPRDGYLS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+AR L+GK +G+ + V    G    EI+ +
Sbjct: 124 YLSPLARNLVGKNVGEEVKV----GASNAEIVSI 153


>gi|332557443|ref|ZP_08411765.1| Transcription elongation factor [Rhodobacter sphaeroides WS8N]
 gi|332275155|gb|EGJ20470.1| Transcription elongation factor [Rhodobacter sphaeroides WS8N]
          Length = 164

 Score = 72.5 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 16/153 (10%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT +G   +Q  L     + R      +   RA  D  +     AA       E  + 
Sbjct: 26  NLVTPRGLADLQARL--LATQAR------LRALRAREDRLDRLPEAAA-------ERDIR 70

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE  I  A ++D +T   D +AFG  V++ ++  G +  ++I G+ EA   +  ++  +
Sbjct: 71  YLEARIASAILVDPATQPLDEVAFGLAVTVEDEA-GRRTVWEITGEDEAQATARRIAPQA 129

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+ARAL+G  LG+ +    P GE T  +  +  
Sbjct: 130 PLARALMGARLGEKVVWTRPAGEVTLTVTGIAH 162


>gi|300023335|ref|YP_003755946.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525156|gb|ADJ23625.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 152

 Score = 72.1 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 24/153 (15%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VT +G   I+ E++  Q        + ++ AR   D          +         +
Sbjct: 24  RNLVTPEGLALIEGEIKRLQ--------EDLNAARESDD----------RNAIARASHDL 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                 +  AE+   ++ +   +AFG+ V+L E++ G  + ++IVG+ EAD   G +S  
Sbjct: 66  RYWSQRLATAELQPPASDA-SVVAFGSRVTL-ERDDGRMQKFRIVGEDEADPAKGSISYV 123

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           SP+A+AL+GK  GD +      G    EI+++ 
Sbjct: 124 SPLAQALLGKAAGDTVK----AGSGEAEIIKIE 152


>gi|319787977|ref|YP_004147452.1| GreA/GreB family elongation factor [Pseudoxanthomonas suwonensis
           11-1]
 gi|317466489|gb|ADV28221.1| GreA/GreB family elongation factor [Pseudoxanthomonas suwonensis
           11-1]
          Length = 143

 Score = 72.1 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RAEV+    +  D +   + V   +  SG+K    +V   EADV+ G VS+ +P
Sbjct: 41  LMDELNRAEVLPPEQVPADVVTMHSQVECEDIASGEKHVLTLVYPNEADVEKGRVSVLAP 100

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +G  I   APGG      +  V +
Sbjct: 101 VGSALLGLSVGQSIDWQAPGGRPLKLRVTGVRY 133


>gi|145298530|ref|YP_001141371.1| transcription elongation factor GreA/GreB [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142851302|gb|ABO89623.1| transcription elongation factor GreA/GreB [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 131

 Score = 72.1 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  + RAE+ + + M  D +   +TV    +NS ++    +V  ++       +S+ +P
Sbjct: 29  LQEELDRAEMREPADMPPDVVTMNSTVRFKMQNSENEFCLTLVYPKDVQGDESRISVLAP 88

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G ++GD I+   P G     EIL+V++
Sbjct: 89  VGSALLGLKVGDSIAWPGPAGRTIQVEILEVVY 121


>gi|221638413|ref|YP_002524675.1| transcription elongation factor [Rhodobacter sphaeroides KD131]
 gi|221159194|gb|ACM00174.1| Transcription elongation factor [Rhodobacter sphaeroides KD131]
          Length = 164

 Score = 72.1 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 16/153 (10%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT +G   +Q  L     + R      +   RA  D  +     AA       E  + 
Sbjct: 26  NLVTPRGLADLQARL--LATQAR------LRALRAREDRLDRLPEAAA-------ERDIR 70

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE  I  A ++D +    D +AFG  V++ ++  G +  ++I G+ EA   +  ++  +
Sbjct: 71  YLEARIASAILVDPAAQPLDEVAFGLAVTVEDEA-GRRTVWEITGEDEAQATARRIAPQA 129

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+ARAL+G  LG+ +    P GE T  +  +  
Sbjct: 130 PLARALMGARLGEKVVWTRPAGEVTLTVTGIAH 162


>gi|16262532|ref|NP_435325.1| transcription elongation factor regulatory protein [Sinorhizobium
           meliloti 1021]
 gi|307300722|ref|ZP_07580497.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
 gi|14523141|gb|AAK64737.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
 gi|306904256|gb|EFN34841.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
          Length = 160

 Score = 72.1 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G   +  EL              + +AR   D +   E    +  Q+    R  
Sbjct: 29  NLVTETGLKAL--ELH-------------LQQAREAFDATSTIEDVNERRRQSAGPLREL 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                  R   +     S D +AFG+TV+   ++ G  + Y+IVG+ EAD ++G +S  S
Sbjct: 74  RYFAERVRTAQLVPDPASFDVVAFGSTVTFS-RDDGRVQKYRIVGEDEADPKAGSISYVS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+AR L+GK +GD+ SV    G++  EIL +
Sbjct: 133 PVARVLMGKSVGDVASV----GDQELEILAI 159


>gi|90423091|ref|YP_531461.1| transcription elongation factor regulatory protein
           [Rhodopseudomonas palustris BisB18]
 gi|90105105|gb|ABD87142.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           BisB18]
          Length = 160

 Score = 72.1 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 72/152 (47%), Gaps = 22/152 (14%)

Query: 5   IPVTSKGFDKIQQELRWRQQ-EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
             VT+ G   +Q +L   +   E  + I  ++E R      E    + A           
Sbjct: 29  NWVTAAGLKALQDQLDAARTGVEAAQAIADVNERR----RQEAGPLRDA----------- 73

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  AE++     S D +AFG+TV+   +  G  ++++IVG+ EAD ++G +S  
Sbjct: 74  RYLAARVRTAELM-PVPSSSDIVAFGSTVTFR-RGDGRVQSFRIVGEDEADPKAGSISFV 131

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+AR L+ K +GD++      G +  EI+ +
Sbjct: 132 SPVARLLLRKSVGDVV----GSGAQELEIIAI 159


>gi|114320917|ref|YP_742600.1| GreA/GreB family elongation factor [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227311|gb|ABI57110.1| GreA/GreB family elongation factor [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 137

 Score = 72.1 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
             AEL+  + RAE+++   +    ++  +TV     +S ++    +V  ++ D  SG +S
Sbjct: 31  SKAELKAELERAEIVEPEDIPPTVVSMNSTVRFRVASSSEEFTLTLVYPKDMDATSGKIS 90

Query: 122 ISSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
           + +P+  AL+G   GD I    P GG     I ++L+
Sbjct: 91  VLAPVGSALLGLSQGDEIEWPKPGGGVLRVRIEEILY 127


>gi|218506771|ref|ZP_03504649.1| transcription elongation factor GreA [Rhizobium etli Brasil 5]
          Length = 60

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 44/56 (78%), Positives = 49/56 (87%)

Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +K YQIVGDQEADV++G +SISSPIARALIGKE+GD I VNAPGG K YEILQV W
Sbjct: 4   EKTYQIVGDQEADVKAGRISISSPIARALIGKEVGDSIEVNAPGGSKAYEILQVSW 59


>gi|77462558|ref|YP_352062.1| putative transcription elongation factor [Rhodobacter sphaeroides
           2.4.1]
 gi|126461492|ref|YP_001042606.1| GreA/GreB family elongation factor [Rhodobacter sphaeroides ATCC
           17029]
 gi|77386976|gb|ABA78161.1| putative transcription elongation factor [Rhodobacter sphaeroides
           2.4.1]
 gi|126103156|gb|ABN75834.1| GreA/GreB family elongation factor [Rhodobacter sphaeroides ATCC
           17029]
          Length = 164

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 16/151 (10%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT +G   +Q  L     + R      +   RA  D  +     AA       E  + 
Sbjct: 26  NLVTPRGLADLQARL--LATQAR------LRALRAREDRLDRLPEAAA-------ERDIR 70

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE  I  A ++D +    D +AFG  V++ ++  G +  ++I G+ EA   +  ++  +
Sbjct: 71  YLEARIASAILVDPAAQPLDEVAFGLAVTVEDEA-GRRTVWEITGEDEAQATARRIAPQA 129

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+ARAL+G  LG+ +    P GE T  +  +
Sbjct: 130 PLARALMGARLGEKVVWTRPAGEVTLTVTGI 160


>gi|84386347|ref|ZP_00989375.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
 gi|84378771|gb|EAP95626.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
          Length = 107

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 2/104 (1%)

Query: 55  LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
           +    + R+  L   +    ++D S     ++ FGA V +   +   K  ++IVG +E  
Sbjct: 1   MLRQIDRRVRFLRKFLPDVTIVDYSPQQEGKVFFGAWVEIENDDGEMK-KFRIVGPEEIY 59

Query: 115 VQ-SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
               G +SI SP+ARAL+ KE+ D  +V  P G+K + I  + +
Sbjct: 60  GDAKGYISIDSPMARALLKKEVDDEFTVTTPEGDKEWFINSIRY 103


>gi|153010033|ref|YP_001371248.1| GreA/GreB family elongation factor [Ochrobactrum anthropi ATCC
           49188]
 gi|151561921|gb|ABS15419.1| GreA/GreB family elongation factor [Ochrobactrum anthropi ATCC
           49188]
          Length = 156

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 39/161 (24%)

Query: 4   KIPVTSKGFDKIQQELRWRQQE--------ERPRIIKAISEARAYGDLSENAEYQAAKEL 55
           +  VT  G   I+ E+   Q+E        ER  I +   + R +    ENAE       
Sbjct: 25  RNLVTPTGLTMIEDEIARLQRELADANVAGERSAIARISRDLRYWTTRRENAE------- 77

Query: 56  QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV 115
                               + +     D + FG TV L   + G  + + IVG+ EAD 
Sbjct: 78  --------------------LSVPVPDSDVVRFGMTVELENLDDGKVRRWTIVGEDEADP 117

Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +G +S  +P+A  L GK +GD++ +N       +EI+ + 
Sbjct: 118 SNGKISHVAPVAILLFGKPVGDVVKIN----NVEWEIVSLK 154


>gi|82702067|ref|YP_411633.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC
           25196]
 gi|82410132|gb|ABB74241.1| GreA/GreB family elongation factor [Nitrosospira multiformis ATCC
           25196]
          Length = 137

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 1/95 (1%)

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           AEL+  + RAE+++   +    +   +TV     +SG      +V  ++ D     +S+ 
Sbjct: 33  AELQAELERAEIVEPEQIPPTVVTMNSTVRFSIDSSGQDFRLTLVYPKDVDGSGNKISVL 92

Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
           +P+  AL+G   GD I    P GG     I ++++
Sbjct: 93  APVGSALLGLSTGDEIEWPRPGGGTIKVRIEEIIY 127


>gi|297625162|ref|YP_003706596.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM
           17093]
 gi|297166342|gb|ADI16053.1| GreA/GreB family elongation factor [Truepera radiovictrix DSM
           17093]
          Length = 154

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  ++ VT +G  ++Q  L+  + +      + + E  +  D  +++  + AK+ +   E
Sbjct: 1   MTREVYVTPEGMRRLQATLQE-EYKRLEEATRILQELTSSSDDYDDSGLEDAKQEKARLE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-- 118
            R+ +LE  ++RA VI+    +  +   G+ V+L     G++   Q+V   EA+V S   
Sbjct: 60  RRIDQLEEQLSRAVVIEE--HARTQADLGSIVTLQ--GDGEEITVQLVAPVEAEVISEDI 115

Query: 119 -LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             +S  SP+ +AL+G+++G+   V        Y +  + 
Sbjct: 116 PHISNESPLGKALMGRKVGERFEVKLGRRTAAYTVQSIR 154


>gi|256426014|ref|YP_003126667.1| GreA/GreB family elongation factor [Chitinophaga pinensis DSM 2588]
 gi|256040922|gb|ACU64466.1| GreA/GreB family elongation factor [Chitinophaga pinensis DSM 2588]
          Length = 131

 Score = 71.3 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 50/98 (51%)

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           ++     L   + RA ++D  ++    I   + VS+ E NSG   +++IV   +AD++  
Sbjct: 33  DDISEMSLAYELNRAVIVDNESLPVGTIRLNSLVSVKEVNSGKVTDFRIVMPIDADIKQK 92

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +SI +P+  ALIG   GD +    P G K + +L V 
Sbjct: 93  KISILAPLGAALIGFRKGDEVEWKMPAGVKRFTVLNVQ 130


>gi|218662438|ref|ZP_03518368.1| transcription elongation factor regulatory protein [Rhizobium etli
           IE4771]
          Length = 160

 Score = 71.3 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 22/152 (14%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE-GRM 63
             VT  G   +  EL++              +AR   D +   E    +  Q  N    +
Sbjct: 29  NLVTEAGLKAL--ELQF-------------QQAREAYDATNTIEDVNERRRQAANPLRDL 73

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A+++     S + +AFG TV+   ++ G  + Y+IVG+ EAD ++G +S  
Sbjct: 74  RYLAARLRTAQLM-PYPTSVNVVAFGNTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYV 131

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+AR L+GK +GD +      G +  EI+ +
Sbjct: 132 SPVARLLMGKAVGDAVE----AGGQELEIIAI 159


>gi|254563199|ref|YP_003070294.1| GreA/GreB family transcription elongation factor [Methylobacterium
           extorquens DM4]
 gi|254270477|emb|CAX26477.1| putative GreA/GreB family transcription elongation factor
           [Methylobacterium extorquens DM4]
          Length = 154

 Score = 71.3 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 25/150 (16%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VT +G  +I+ E+   +          +S      D          K         +   
Sbjct: 30  VTPEGLAQIEAEVARLE--------AELSGLSPQQD----------KADHTRVSRDLRYW 71

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
                 AE I+       R     TV   +     ++ ++IVG+ EAD  +G +S  +P+
Sbjct: 72  TARKNSAEPIEAFEGDTVRFGATVTVLREDDT---RQTFRIVGEDEADPSAGSISYVAPL 128

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
           A+AL GK +GD ++VN    +  +EI ++ 
Sbjct: 129 AQALTGKGVGDTVTVN----DHEFEIAEIR 154


>gi|147676876|ref|YP_001211091.1| hypothetical protein PTH_0541 [Pelotomaculum thermopropionicum SI]
 gi|146272973|dbj|BAF58722.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
          Length = 150

 Score = 71.3 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 53/107 (49%)

Query: 50  QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
           +   E +NL E  +  L+ +I  A    I+      +  G+ V +   +  +   Y IV 
Sbjct: 38  KERNEFENLIENYIQRLDRLIRNASKSKIADNKVPFVTIGSEVEIQNLSEQEVYKYFIVN 97

Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
              ++V+ G +S  SP+ ++L+ K++GD + V APGG   Y+I  + 
Sbjct: 98  PFYSEVREGHISFLSPVGKSLLLKKVGDEVEVKAPGGVFRYKIKSIR 144


>gi|288940256|ref|YP_003442496.1| GreA/GreB family elongation factor [Allochromatium vinosum DSM 180]
 gi|288895628|gb|ADC61464.1| GreA/GreB family elongation factor [Allochromatium vinosum DSM 180]
          Length = 137

 Score = 71.3 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE  + RAEV+D   M  + ++  +TV     ++ +     +V  ++ D   G +SI +
Sbjct: 34  ELEAELARAEVVDPREMPPNVVSMNSTVRFRVMSTNEAFTLTLVYPKDMDASGGKISILA 93

Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
           P+  AL+G   GD I    P GG     I +V +
Sbjct: 94  PVGSALLGLSSGDEIEWPKPGGGVLRVRIEEVTY 127


>gi|330830261|ref|YP_004393213.1| transcription elongation factor GreA/GreB [Aeromonas veronii B565]
 gi|328805397|gb|AEB50596.1| Transcription elongation factor GreA/GreB [Aeromonas veronii B565]
          Length = 131

 Score = 71.0 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  + RAE+ + + M  D +   + V    ++SG++    +V  ++A      +S+ +P
Sbjct: 29  LQEELDRAEIREPADMPPDVVTMNSKVRFKMQSSGNEFCLTLVYPRDAKGDESNISVLAP 88

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G ++GD I+   P G     EIL+V++
Sbjct: 89  VGSALLGLKVGDSIAWPGPAGRTIEVEILEVVY 121


>gi|145641638|ref|ZP_01797215.1| transcription elongation factor GreA [Haemophilus influenzae
          R3021]
 gi|145273685|gb|EDK13554.1| transcription elongation factor GreA [Haemophilus influenzae
          22.4-21]
          Length = 58

 Score = 71.0 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/57 (49%), Positives = 42/57 (73%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
          + +IP+T +G +++++EL + +   RP IIKAI+EAR +GDL ENAEY AA+E Q  
Sbjct: 1  MQQIPMTVRGAEQLREELDFLKNVRRPEIIKAIAEAREHGDLKENAEYHAAREQQGF 57


>gi|256821334|ref|YP_003145297.1| GreA/GreB family elongation factor [Kangiella koreensis DSM 16069]
 gi|256794873|gb|ACV25529.1| GreA/GreB family elongation factor [Kangiella koreensis DSM 16069]
          Length = 136

 Score = 71.0 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 1/105 (0%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           E    +     ELE  + RAE+++   +  + +   +TV     +S ++  Y +V  ++A
Sbjct: 22  ETLPHDAVGKEELEIELERAEIVEPKEVPANVVTMNSTVRFKVASSKEEFEYTLVYPKDA 81

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
           D  +  +SI +P+  A++G + GD I    P GG     I +V++
Sbjct: 82  DGSNNKISILAPVGSAMLGLKEGDEIEWPKPGGGVLKVHIDKVVY 126


>gi|320334324|ref|YP_004171035.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
           21211]
 gi|319755613|gb|ADV67370.1| GreA/GreB family elongation factor [Deinococcus maricopensis DSM
           21211]
          Length = 157

 Score = 71.0 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 11/161 (6%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPR--IIKAISEARAYGDLSENAEYQAAKELQNL 58
           M   I VT+ G  ++Q  L   ++       +++   EA      +E+     A++    
Sbjct: 1   MASPIQVTAAGLQRLQGSLDRERERAEEARRVLREQMEANE----AESLGLTEAQQHLAA 56

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            E R+ ELE +I  AEV+  ST   D +A G+T++L+   +G  +  ++V   EA     
Sbjct: 57  IEARIEELEGMIADAEVLPASTS--DAVALGSTLTLLNVENGQVRRVRLVSPVEATGSVD 114

Query: 119 ---LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
              L+S  SP+  AL+G+ +G+  SV   G    Y++  + 
Sbjct: 115 GVALISTQSPVGAALLGRRVGETFSVRLGGRTAEYQVRSLE 155


>gi|218532092|ref|YP_002422908.1| GreA/GreB family elongation factor [Methylobacterium
           chloromethanicum CM4]
 gi|218524395|gb|ACK84980.1| GreA/GreB family elongation factor [Methylobacterium
           chloromethanicum CM4]
          Length = 154

 Score = 71.0 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 25/150 (16%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VT +G  +I+ E+   +           +E        + A++             +   
Sbjct: 30  VTPEGLAQIEAEVARLE-----------AELSGLSPQQDKADHI-------RVSRDLRYW 71

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
                 AE ++       R     TV   +     ++ ++IVG+ EAD  +G +S  +P+
Sbjct: 72  TARKNSAEPVEAFEGDTVRFGATVTVLREDDT---RQTFRIVGEDEADPSAGSISYVAPL 128

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
           A+AL GK +GD ++VN    +  +EI ++ 
Sbjct: 129 AQALTGKGVGDTVTVN----DHEFEIAEIR 154


>gi|62289525|ref|YP_221318.1| transcription elongation factor [Brucella abortus bv. 1 str. 9-941]
 gi|82699455|ref|YP_414029.1| transcription elongation factor GreA/GreB [Brucella melitensis
           biovar Abortus 2308]
 gi|189023782|ref|YP_001934550.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
           abortus S19]
 gi|237815022|ref|ZP_04594020.1| Transcription elongation factor greA [Brucella abortus str. 2308 A]
 gi|254688843|ref|ZP_05152097.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
           abortus bv. 6 str. 870]
 gi|254696973|ref|ZP_05158801.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254729874|ref|ZP_05188452.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
           abortus bv. 4 str. 292]
 gi|256257090|ref|ZP_05462626.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
           abortus bv. 9 str. C68]
 gi|260545721|ref|ZP_05821462.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
           abortus NCTC 8038]
 gi|260754325|ref|ZP_05866673.1| GreA/GreB family elongation factor [Brucella abortus bv. 6 str.
           870]
 gi|260757544|ref|ZP_05869892.1| GreA/GreB family elongation factor [Brucella abortus bv. 4 str.
           292]
 gi|260761369|ref|ZP_05873712.1| GreA/GreB family elongation factor [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883350|ref|ZP_05894964.1| GreA/GreB family elongation factor [Brucella abortus bv. 9 str.
           C68]
 gi|297247937|ref|ZP_06931655.1| transcription elongation factor regulatory protein [Brucella
           abortus bv. 5 str. B3196]
 gi|62195657|gb|AAX73957.1| transcription elongation factor [Brucella abortus bv. 1 str. 9-941]
 gi|82615556|emb|CAJ10536.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
           melitensis biovar Abortus 2308]
 gi|189019354|gb|ACD72076.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
           abortus S19]
 gi|237789859|gb|EEP64069.1| Transcription elongation factor greA [Brucella abortus str. 2308 A]
 gi|260097128|gb|EEW81003.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
           abortus NCTC 8038]
 gi|260667862|gb|EEX54802.1| GreA/GreB family elongation factor [Brucella abortus bv. 4 str.
           292]
 gi|260671801|gb|EEX58622.1| GreA/GreB family elongation factor [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260674433|gb|EEX61254.1| GreA/GreB family elongation factor [Brucella abortus bv. 6 str.
           870]
 gi|260872878|gb|EEX79947.1| GreA/GreB family elongation factor [Brucella abortus bv. 9 str.
           C68]
 gi|297175106|gb|EFH34453.1| transcription elongation factor regulatory protein [Brucella
           abortus bv. 5 str. B3196]
          Length = 156

 Score = 71.0 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 23/153 (15%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VTS G  +I  EL   Q          ++EA   G+ S                  +
Sbjct: 25  RNLVTSAGLKQIDDELARLQH--------DLAEANIAGERS----------AVARISRDL 66

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                    AE+   +  S D + FG TV L   + G  + + IVG+ EAD   G +S  
Sbjct: 67  RYWMARRETAELSVPAPDS-DVVRFGMTVELENLDDGSTRRWTIVGEDEADPSRGKISHV 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +P++  L GK +GD++ +    G   +EI+ + 
Sbjct: 126 APVSILLFGKPVGDVVKI---NGT-EWEIVSLK 154


>gi|253795713|ref|YP_003038809.1| putative transcription elongation factor GreA [Candidatus Hodgkinia
           cicadicola Dsem]
 gi|253740021|gb|ACT34356.1| putative transcription elongation factor GreA [Candidatus Hodgkinia
           cicadicola Dsem]
          Length = 155

 Score = 71.0 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/135 (34%), Positives = 79/135 (58%), Gaps = 2/135 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T+ G+  +  +L WR+Q ++P +   +  AR+ GDLSENA+YQAA+    LNE R+ E+
Sbjct: 6   LTALGYISLVAQLNWRRQHKKPALKAQLKAARSLGDLSENADYQAARREDKLNEARINEI 65

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
              + RA++   +  + +R ++ +TV L   +      + IVGD EA      V +SS +
Sbjct: 66  LQTLARAKLA-PARSAANRPSYNSTVVLKRADGKL-LAFNIVGDDEAIATEANVGLSSDV 123

Query: 127 ARALIGKELGDIISV 141
           AR  + K++GD++ V
Sbjct: 124 ARQCLNKKVGDVVVV 138


>gi|254718708|ref|ZP_05180519.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
           83/13]
 gi|265983683|ref|ZP_06096418.1| GreA/GreB family elongation factor [Brucella sp. 83/13]
 gi|306837756|ref|ZP_07470623.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
           NF 2653]
 gi|264662275|gb|EEZ32536.1| GreA/GreB family elongation factor [Brucella sp. 83/13]
 gi|306407165|gb|EFM63377.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
           NF 2653]
          Length = 156

 Score = 71.0 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 23/153 (15%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VTS G  +I  EL   Q          ++EA   G+ S                  +
Sbjct: 25  RNLVTSAGLKQIDDELARLQH--------DLAEANIAGERS----------AVARISRDL 66

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                    AE+   +  S D + FG TV L   + G  + + IVG+ EAD   G +S  
Sbjct: 67  RYWTARRETAELSVPAPDS-DVVRFGMTVELENLDDGSIRRWTIVGEDEADPSRGKISHV 125

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +P++  L GK +GD++ +    G   +EI+ + 
Sbjct: 126 APVSILLFGKPVGDVVKI---NGT-EWEIVSLK 154


>gi|300770814|ref|ZP_07080692.1| transcription elongation factor GreA [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300762371|gb|EFK59189.1| transcription elongation factor GreA [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 79

 Score = 70.6 bits (171), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 43/64 (67%)

Query: 92  VSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYE 151
           V +  K +G +  YQ+V + EAD++SG +S+ SPIA+ L+GK  GD  ++  P G+  +E
Sbjct: 14  VRIKNKKNGSEMTYQLVSETEADLKSGKISVKSPIAQGLLGKSKGDTATIEVPAGKIEFE 73

Query: 152 ILQV 155
           I+++
Sbjct: 74  IMEI 77


>gi|163853276|ref|YP_001641319.1| transcription elongation factor GreA/GreB domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|163664881|gb|ABY32248.1| transcription elongation factor GreA/GreB domain protein
           [Methylobacterium extorquens PA1]
          Length = 154

 Score = 70.6 bits (171), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 60/150 (40%), Gaps = 25/150 (16%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VT +G  +I+ E+   +          +S      D          K         +   
Sbjct: 30  VTPEGLTQIEAEVARLE--------AELSGLSPQQD----------KADHTRVSRDLRYW 71

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
                 AE ++       R     TV   +     ++ ++IVG+ EAD  +G +S  +P+
Sbjct: 72  TARKNSAEPVEAFEGDTVRFGATVTVLREDDT---RQTFRIVGEDEADPSAGSISYVAPL 128

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
           A+AL GK +GD ++VN    +  +EI ++ 
Sbjct: 129 AQALTGKGVGDTVTVN----DHEFEIAEIR 154


>gi|21111854|gb|AAM40146.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
          Length = 135

 Score = 70.6 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA V+    + GD +   + +   ++  G++    +V   EADVQ   +S+ +P
Sbjct: 33  LADELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHSRISVLAP 92

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQV 155
           +  AL+G  +G  I   APGG +    +  V
Sbjct: 93  VGTALLGLSVGQSIDWRAPGGRDLRLRVTAV 123


>gi|77747771|ref|NP_636222.2| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|188992915|ref|YP_001904925.1| Regulator of nucleoside diphosphate kinase [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167734675|emb|CAP52885.1| Regulator of nucleoside diphosphate kinase [Xanthomonas campestris
           pv. campestris]
          Length = 143

 Score = 70.6 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA V+    + GD +   + +   ++  G++    +V   EADVQ   +S+ +P
Sbjct: 41  LADELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHSRISVLAP 100

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQV 155
           +  AL+G  +G  I   APGG +    +  V
Sbjct: 101 VGTALLGLSVGQSIDWRAPGGRDLRLRVTAV 131


>gi|303239530|ref|ZP_07326056.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2]
 gi|302592908|gb|EFL62630.1| GreA/GreB family elongation factor [Acetivibrio cellulolyticus CD2]
          Length = 147

 Score = 70.6 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 69/157 (43%), Gaps = 13/157 (8%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLN 59
           M  K+ +T + ++ +   L      E         E R +  +    EY + + E + L 
Sbjct: 1   MQKKLTLTQQAYENL---LAHLVDFE---------ERRKHIIMLYFPEYNSQRVEFEVLI 48

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           +  ++ L++++      D S      +   + + + +  + +  NY ++  +  D  +  
Sbjct: 49  DDYISALDDVVRNVSFSDKSGNDFPFVCLNSVIEVEDVENTETFNYMLILPEANDYGTNC 108

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           ++I SP+ +AL+ K+ G+ +SVN P G   Y I  + 
Sbjct: 109 ITILSPMGKALLCKKDGETVSVNTPSGVYRYRIKSIK 145


>gi|315127999|ref|YP_004070002.1| transcription elongation factor and transcript cleavage
           [Pseudoalteromonas sp. SM9913]
 gi|315016513|gb|ADT69851.1| transcription elongation factor and transcript cleavage
           [Pseudoalteromonas sp. SM9913]
          Length = 96

 Score = 70.6 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 1/95 (1%)

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           M  L   I   +++D S +   ++ FGA V +  +    K  ++IVG  E   ++  +SI
Sbjct: 1   MRYLRKRIPDLKIVDYSPVQDGKVFFGAWVEIENEAGECK-KFRIVGPDEIYDRNDYISI 59

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+ K++ D   V  P G K + +  + +
Sbjct: 60  DSPMARALLKKQVDDDFEVMTPQGAKQWYVNNISY 94


>gi|220934850|ref|YP_002513749.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996160|gb|ACL72762.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. HL-EbGR7]
          Length = 137

 Score = 70.2 bits (170), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            +L   + RA V++ S +    +   + V    +  G +    +V     D     +S+ 
Sbjct: 33  RQLLAELERANVVEPSQVPPTLVTMNSRVRFRVEPEGREFQRTLVYPSGMDGDEEKISVL 92

Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
           +PI  AL+G  +GD I+   P GGE    I+++L+
Sbjct: 93  APIGSALLGLSVGDSIAWPTPKGGEMNVRIMEILY 127


>gi|34497951|ref|NP_902166.1| nucleoside diphosphate kinase regulator [Chromobacterium violaceum
           ATCC 12472]
 gi|34103806|gb|AAQ60167.1| nucleoside diphosphate kinase regulator [Chromobacterium violaceum
           ATCC 12472]
          Length = 134

 Score = 70.2 bits (170), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RA+V+D   M  + +   ++V +     G +K   +V  ++AD + G +S+ +P
Sbjct: 34  LEAELERADVVDPQAMPSNVVTMNSSVRIR-LGDGQEKQLTLVYPRDADSEQGRISVLAP 92

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           I  AL+G   G  +    P G     +L++ +
Sbjct: 93  IGAALLGLSTGQSMQWPTPSGHTELTVLEITY 124


>gi|92118882|ref|YP_578611.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14]
 gi|91801776|gb|ABE64151.1| GreA/GreB family elongation factor [Nitrobacter hamburgensis X14]
          Length = 141

 Score = 70.2 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 1/120 (0%)

Query: 37  ARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVE 96
           A A      +     A+            L   I RAE+I     + + +   + V+ ++
Sbjct: 11  AIAISSRDIDRLRHLAEAAMEKYPATAEFLAREIDRAEIIPADRSARNIVTMQSEVTFID 70

Query: 97  KNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQV 155
             SG K+   +V  ++ADV +G +SI +PI  ALIG   G  I    P GG ++  ++ V
Sbjct: 71  DISGQKRTVILVYPEDADVDAGKISILTPIGAALIGLSAGQSIEFQTPSGGWRSLTVIAV 130


>gi|183222143|ref|YP_001840139.1| putative transcription elongation factor [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189912206|ref|YP_001963761.1| transcription elongation factor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167776882|gb|ABZ95183.1| Transcription elongation factor [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167780565|gb|ABZ98863.1| Putative transcription elongation factor [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 138

 Score = 70.2 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 53/103 (51%)

Query: 55  LQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEAD 114
            +N  +  + +L   I RA+ +D   +  + +   + + +      + K +++V  ++++
Sbjct: 26  KRNKTDANVQDLLGEIERAQKVDSKQIPSNVVTMNSVIEIKNLEGIEFKEFRLVYPEDSN 85

Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +    +SI +PIA A IG + GD+I  N P G   ++I ++ +
Sbjct: 86  LDQNQISILAPIATASIGYKTGDVIFWNVPDGVYRFQITEIKY 128


>gi|86358113|ref|YP_470005.1| transcription elongation factor regulatory protein [Rhizobium etli
           CFN 42]
 gi|86282215|gb|ABC91278.1| transcription elongation factor protein [Rhizobium etli CFN 42]
          Length = 160

 Score = 70.2 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G   +  EL++       +   A   A A  D++E       +         + 
Sbjct: 29  NLVTEAGLRAL--ELQF------QQARAAYDTAIAIEDVNER------RRQAANPLRDLR 74

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   +  A++I     S D +AFG TV+   ++ G  + Y++VG+ EAD ++G +S  S
Sbjct: 75  YLSARLRTAQLI-PDPTSADVVAFGLTVTFT-RDDGRVQTYRLVGEDEADPKAGSISYVS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+A+ L+GK +GD++      G +  EI+ +
Sbjct: 133 PVAQLLMGKAVGDVVE----TGGQELEIIAI 159


>gi|299783423|gb|ADJ41421.1| Transcription elongation factor greA (Transcript cleavage factor
           greA) [Lactobacillus fermentum CECT 5716]
          Length = 69

 Score = 69.8 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 39/69 (56%)

Query: 88  FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
            G  ++  E    + ++Y IVG+ E+D  SG +S  SP+A+ L+G ++GD + +  P G 
Sbjct: 1   MGREITFQELPDEEPESYTIVGESESDPLSGKISNESPMAKGLLGHKVGDTVEIEIPNGS 60

Query: 148 KTYEILQVL 156
              +IL V 
Sbjct: 61  MKVKILSVK 69


>gi|297170470|gb|ADI21501.1| transcription elongation factor [uncultured myxobacterium
           HF0070_11L13]
          Length = 91

 Score = 69.8 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
             +++D S     ++ FGA V +   + G    ++IVG  E   +   +SI SP+ARAL+
Sbjct: 4   NLKIVDYSPQQEGKVFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYISIDSPMARALL 62

Query: 132 GKELGDIISVNAPGGEKTYEILQVLWI 158
            KE+GD+  VN P GE ++ +  + ++
Sbjct: 63  KKEVGDLAVVNTPAGEASWYVNAIEYV 89


>gi|209549738|ref|YP_002281655.1| transcription elongation factor regulatory protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535494|gb|ACI55429.1| GreA/GreB family elongation factor [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 160

 Score = 69.8 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 22/152 (14%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE-GRM 63
             VT  G   +  EL++              +AR   D +   E    +  Q       +
Sbjct: 29  NLVTEAGLKAL--ELQF-------------QQAREAYDAASTVEDVNERRRQAAGPLRDL 73

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A+++     S D +AFG+TV+   ++ G  + Y+IVG+ EAD ++G +S  
Sbjct: 74  RYLAARLRTAQLM-ADPASTDTVAFGSTVTFS-RDDGRVQTYRIVGEDEADPKAGSISYV 131

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+AR L+GK +GD++      G +  EI+ +
Sbjct: 132 SPVARLLMGKAVGDVVE----TGGQELEIIAI 159


>gi|327187956|gb|EGE55188.1| transcription elongation factor protein, GreA/GreB family
           [Rhizobium etli CNPAF512]
          Length = 160

 Score = 69.8 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G   +  EL+++Q  E       I +                +         + 
Sbjct: 29  NLVTEAGLKAL--ELQFQQAREAYDAANTIEDVNER------------RRHAANPLRDLR 74

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   +  A+V+  +  S D +AFG+TV+   ++ G  + Y+IVG+ EAD ++G +S  S
Sbjct: 75  YLAARLRTAQVM-PNPTSVDVVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYVS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+AR L+GK  GD +      G +  EI+ +
Sbjct: 133 PVARLLMGKAAGDAVE----SGGQELEIIAI 159


>gi|197104061|ref|YP_002129438.1| transcription elongation factor [Phenylobacterium zucineum HLK1]
 gi|196477481|gb|ACG77009.1| transcription elongation factor [Phenylobacterium zucineum HLK1]
          Length = 214

 Score = 69.4 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 10/139 (7%)

Query: 19  LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDI 78
           L   +  ER R    +  A A  D   N             E    EL+     A V+  
Sbjct: 83  LADTKTRERAR-TPTVRVAEADYDRLLNLADHDG----PGAELLARELDR----AIVVRE 133

Query: 79  STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
              S   +  G+TV   ++ +   +  ++V    AD+ +  +S+ SP+  AL+G  +GD 
Sbjct: 134 GEKSRPFVRLGSTVEYRDRLTEKVRTVELVPPDAADIDANRLSVLSPVGAALLGLSVGDT 193

Query: 139 ISVNAPGGE-KTYEILQVL 156
            S  AP G  +   +  V 
Sbjct: 194 FSWTAPDGRPRVVTVEAVR 212


>gi|66575033|gb|AAY50443.1| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
           pv. campestris str. 8004]
          Length = 135

 Score = 69.4 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA V+    + GD +   + +   ++  G++    +V   EADVQ   +S+ +P
Sbjct: 33  LADELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHSRISVLAP 92

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQV 155
              AL+G  +G  I   APGG +    +  V
Sbjct: 93  AGTALLGLSVGQSIDWRAPGGRDLRLRVTAV 123


>gi|77761289|ref|YP_244463.2| regulator of nucleoside diphosphate kinase [Xanthomonas campestris
           pv. campestris str. 8004]
          Length = 143

 Score = 69.4 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA V+    + GD +   + +   ++  G++    +V   EADVQ   +S+ +P
Sbjct: 41  LADELGRARVVPPDQIPGDVVTMHSRIECEDELHGERHTLTLVYPHEADVQHSRISVLAP 100

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQV 155
              AL+G  +G  I   APGG +    +  V
Sbjct: 101 AGTALLGLSVGQSIDWRAPGGRDLRLRVTAV 131


>gi|222106218|ref|YP_002547009.1| transcription elongation factor [Agrobacterium vitis S4]
 gi|221737397|gb|ACM38293.1| transcription elongation factor [Agrobacterium vitis S4]
          Length = 161

 Score = 69.4 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G   +++        +R +   A   ARA  D++E       +         + 
Sbjct: 29  NLVTESGLKALER--------QRVQARDAYDAARAIEDVNER------RRQMAGPFRDLN 74

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE  +  A+V+    ++ D ++FG TV+   ++ G  + Y+IVG+ EAD ++G +S  S
Sbjct: 75  YLEERLHTAQVM-PDPITADSVSFGTTVTFT-RDDGRVQTYRIVGEDEADPKAGSISYVS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+ARALIGK +GD++S+    G++  EI  +
Sbjct: 133 PVARALIGKAVGDVVSL----GDQELEITAI 159


>gi|169830342|ref|YP_001716324.1| GreA/GreB family elongation factor [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637186|gb|ACA58692.1| GreA/GreB family elongation factor [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 154

 Score = 69.4 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 70/157 (44%), Gaps = 6/157 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M   I +++  +     +L   + ++   + +    A A G   ++       E++   +
Sbjct: 1   MASIIELSNHAYKYFTGQLAQMEAQKLA-LFEDFFTAYAPGVPIDDRT-----EVRLFLD 54

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             +  +  ++ RA V++           G  + + + + G  + +++V   E +  +G V
Sbjct: 55  DYLNRVRELLARARVVEGQCPPLPLTLIGCDIRVEDLDRGHSEMFRVVSPYEINPAAGHV 114

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S  SP+ R L+ KE G +++V APGG   Y ++ V +
Sbjct: 115 SFLSPVGRGLLLKEPGQVLAVQAPGGTFRYRVVSVTY 151


>gi|332293562|ref|YP_004432171.1| GreA/GreB family elongation factor [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332171648|gb|AEE20903.1| GreA/GreB family elongation factor [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 167

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 60/153 (39%), Gaps = 16/153 (10%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VTS G  ++++EL     +                 L E  E    +    +  G+  
Sbjct: 29  NYVTSHGLSQLKEELSTLDTK--------------ISTLDETDER-ERRRALAVLNGKRN 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   I    ++D        I FGATV+            QIVG  EA V+   ++ ++
Sbjct: 74  LLLERIQSVRLLD-HIKDEGEIRFGATVTYTIAGMPKPITIQIVGVDEASVKDKKIAFTA 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           PIARALIGK + +  +      E+   I  +++
Sbjct: 133 PIARALIGKRIDETTTFQLGNEERKLTIKNIVY 165


>gi|190892195|ref|YP_001978737.1| transcription elongation factor protein, GreA/GreB family
           [Rhizobium etli CIAT 652]
 gi|218516641|ref|ZP_03513481.1| transcription elongation factor regulatory protein [Rhizobium etli
           8C-3]
 gi|190697474|gb|ACE91559.1| transcription elongation factor protein, GreA/GreB family
           [Rhizobium etli CIAT 652]
          Length = 160

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 68/151 (45%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G   +  EL+++Q  E       I +                +         + 
Sbjct: 29  NLVTEAGLKAL--ELQFQQAREAYDAANTIEDVNER------------RRHAANPLRDLR 74

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   +  A+V+  +  S D +AFG+TV+   ++ G  + Y+IVG+ EAD ++G +S  S
Sbjct: 75  YLAARLRTAQVM-PNPTSVDVVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYVS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+AR L+GK  GD +      G +  EI+ +
Sbjct: 133 PVARLLMGKAAGDAVE----AGGQELEIIAI 159


>gi|222086639|ref|YP_002545173.1| transcription elongation factor protein [Agrobacterium radiobacter
           K84]
 gi|221724087|gb|ACM27243.1| transcription elongation factor protein [Agrobacterium radiobacter
           K84]
          Length = 160

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             +T  G   ++ +L+            A + A    D++E       +         + 
Sbjct: 29  NLMTEAGLKALELQLQQ--------ARAAYAAASTIEDVNER------RRQAAGPLRDLR 74

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   I  A+ I  +  S D +AFG+TV+   ++ G  + Y+IVG+ EAD ++G +S  S
Sbjct: 75  YLAERIRTAQPI-PAPASIDIVAFGSTVTFS-RDDGRVQTYRIVGEDEADPKTGSISFVS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+A+ L+GK +GD+ SV    G++  EI+ +
Sbjct: 133 PVAKLLMGKSVGDVASV----GDQELEIIAI 159


>gi|162450982|ref|YP_001613349.1| regulator of nucleoside diphosphate kinase [Sorangium cellulosum
           'So ce 56']
 gi|161161564|emb|CAN92869.1| regulator of nucleoside diphosphate kinase [Sorangium cellulosum
           'So ce 56']
          Length = 140

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 47/92 (51%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  I RA+V+  + +  + +   + V LV+ ++ ++    +V    ADV+SG +S+ +P
Sbjct: 39  LEIEIERADVVKPADIPPNVVTMNSRVELVDLDTEERLCVTVVFPGNADVKSGRISVLAP 98

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +  AL+G    D +    P   +   I ++ +
Sbjct: 99  MGLALLGCREADEVEWPTPSRTRRLRIERIAY 130


>gi|241205105|ref|YP_002976201.1| transcription elongation factor regulatory protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858995|gb|ACS56662.1| GreA/GreB family elongation factor [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 160

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 22/152 (14%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE-GRM 63
             VT  G   +  EL++              +AR   D +   E    +  Q  +    +
Sbjct: 29  NLVTEAGLKAL--ELQF-------------QQAREAYDAASPIEDVNERRRQAASPLRDL 73

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A+++  S  S D +AFG+TV+   ++ G  + Y+IVG+ EAD ++G +S  
Sbjct: 74  RYLTARLRTAQLM-PSPTSIDTVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYV 131

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+AR L+GK +GD++      G +  EI+ +
Sbjct: 132 SPVARLLMGKAVGDMVE----TGGQELEIIAI 159


>gi|257054902|ref|YP_003132734.1| nucleoside diphosphate kinase regulator [Saccharomonospora viridis
           DSM 43017]
 gi|256584774|gb|ACU95907.1| transcription elongation factor [Saccharomonospora viridis DSM
           43017]
          Length = 154

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 71/155 (45%), Gaps = 7/155 (4%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M     ++     ++++EL   ++ +R  ++  + E    GD ++ A+     E+ +  +
Sbjct: 1   MTSTPGLSPATRSRLERELEQLRK-QRAELLPRLGE-DPLGDSADQADLVERSEVVSRLD 58

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GL 119
            R+ E+ +++       IST S   +  G  V+L   +   +    +    EAD      
Sbjct: 59  RRINEVVDLL----HGQISTESEGGLPSGTKVTLRFDDGSVEDMVVVGVAAEADEDDTST 114

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           ++  SP+ +AL G + GD ++   P GE T EI++
Sbjct: 115 LTADSPLGQALAGHQEGDTVTYRTPKGEVTAEIVK 149


>gi|218510131|ref|ZP_03508009.1| transcription elongation factor regulatory protein [Rhizobium etli
           Brasil 5]
          Length = 160

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G   +  EL+++Q  E       I +                +         + 
Sbjct: 29  NLVTEAGLKAL--ELQFQQAREAYDAANTIEDVNER------------RRHAANPLRDLR 74

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   +  A V+  +  S D +AFG+TV+   ++ G  + Y+IVG+ EAD ++G +S  S
Sbjct: 75  YLAARLRTARVM-PNPTSADVVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISHVS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+AR L+GK  GD +      G +  EI+ +
Sbjct: 133 PVARLLMGKAAGDAVE----AGGQELEIIAI 159


>gi|220922751|ref|YP_002498053.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS
           2060]
 gi|219947358|gb|ACL57750.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS
           2060]
          Length = 141

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 1/106 (0%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A   Q+      + L + + RA+++         +  G  V   +  +G  +   +V   
Sbjct: 31  AAAAQDRMPDVASCLADELDRAQIVAGRGRLPPFVRMGCQVEFRDDTTGRVQIVTLVYPG 90

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           EA+++ G +S+ +PI  ALIG   G  I+     G  K+  +L V 
Sbjct: 91  EANIEQGKISVLTPIGAALIGLSTGQSITWETRSGLTKSLTVLDVR 136


>gi|326802507|ref|YP_004320326.1| GreA/GreB family elongation factor [Sphingobacterium sp. 21]
 gi|326553271|gb|ADZ81656.1| GreA/GreB family elongation factor [Sphingobacterium sp. 21]
          Length = 124

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 51/100 (51%)

Query: 57  NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
           + N  +   L   + RA+V+    +  +R+   + V + + +S +   ++IV    AD++
Sbjct: 25  SNNPDQTMSLAYELGRAKVLAKDAIEKERVKLNSQVMVKDLDSQNTMVFRIVTPDLADMK 84

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
              +S+ +P+  ALIG + GD +    P G K Y IL+V 
Sbjct: 85  QQKISVLTPMGSALIGFKEGDQVEWKMPIGIKRYVILKVE 124


>gi|225157643|ref|ZP_03725033.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2]
 gi|224802710|gb|EEG20963.1| GreA/GreB family elongation factor [Opitutaceae bacterium TAV2]
          Length = 148

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 46/101 (45%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           E ++  E              + D + M    +     V L + ++ + + Y +   + A
Sbjct: 26  EGRHDRENLARLRAEFDRALIIEDDTAMPDGVVTLHCEVRLQDLDTNEIETYTLTLPEHA 85

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           D ++  +SI +PI  AL+G ++ ++++   PGG +   IL+
Sbjct: 86  DPEAHRISILAPIGTALLGYQVDNVVTWEMPGGARRLRILE 126


>gi|299140453|ref|ZP_07033593.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
 gi|298597567|gb|EFI53765.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
          Length = 125

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 4/97 (4%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G +++++E ++   ++RP +   ++ A + GD SENA+YQ AK      +GR+
Sbjct: 19  KNYITPGGLERLKEEHQFLLNKDRPAVAVVVAWAASNGDRSENADYQYAKRRLRQIDGRI 78

Query: 64  AELENIITRAEVIDI----STMSGDRIAFGATVSLVE 96
             L   +  AEV+D     S +   ++ FGATV    
Sbjct: 79  RHLSKRMEAAEVVDPEAPRSGLRATKVYFGATVLYAN 115


>gi|114332047|ref|YP_748269.1| GreA/GreB family elongation factor [Nitrosomonas eutropha C91]
 gi|114309061|gb|ABI60304.1| GreA/GreB family elongation factor [Nitrosomonas eutropha C91]
          Length = 137

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LE  + RA+V+D   +    +   +TV    ++S ++    +V  ++ D     +SI +
Sbjct: 34  DLEAELARADVVDPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPKDVDTSGEKISILA 93

Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
           P+  AL+G   GD I    P GG     I++V +
Sbjct: 94  PVGSALLGLSQGDEIEWPKPGGGVLRVRIVEVTY 127


>gi|207111191|ref|ZP_03245353.1| transcription elongation factor GreA [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 60

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 38/58 (65%)

Query: 98  NSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           ++  + +Y IVG  E+D   GL+S  SPIA++LIGK  GD +S+  P GE  +EIL +
Sbjct: 2   DNDKEFSYTIVGSVESDPAKGLISFGSPIAKSLIGKSKGDAVSIQLPNGESDFEILDI 59


>gi|167647164|ref|YP_001684827.1| transcription elongation factor regulatory protein [Caulobacter sp.
           K31]
 gi|167349594|gb|ABZ72329.1| GreA/GreB family elongation factor [Caulobacter sp. K31]
          Length = 161

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G  +I+ EL             A S A+A GD++++      +         + 
Sbjct: 28  NLVTPGGLVRIEDELA--------AARAAYSAAQAGGDVAQD------RTAMARATRDLR 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                   A++ ++     D + FG +V+  ++  G ++ ++IVG+ EAD   G VS  S
Sbjct: 74  YWSARRASAQLRELDPAL-DVLQFGGSVTF-DREDGRRQTFRIVGEDEADPTQGSVSYVS 131

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+ARAL+GK +GD   V   GG    EI+ +
Sbjct: 132 PVARALLGKAVGDTAIVA--GG--EVEIIAI 158


>gi|255535437|ref|YP_003095808.1| transcription elongation factor [Flavobacteriaceae bacterium
           3519-10]
 gi|255341633|gb|ACU07746.1| transcription elongation factor [Flavobacteriaceae bacterium
           3519-10]
          Length = 170

 Score = 68.7 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 53/106 (50%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           AK+  ++       L   +  A++++ + +  D +   + V +  +N+     ++IV  +
Sbjct: 55  AKKNNSIKAEDAERLLRELHSAKIVESADIPADVVTMNSVVKIHFENNKTVTEFKIVYPE 114

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +A+++   +SI SP+A ALIG  + D I    P G     I ++++
Sbjct: 115 QANIKDRKISIFSPVAAALIGYSVNDEIDWIVPSGMTKIIIDEIIY 160


>gi|240140684|ref|YP_002965164.1| putative GreA/GreB family transcription elongation factor
           [Methylobacterium extorquens AM1]
 gi|240010661|gb|ACS41887.1| putative GreA/GreB family transcription elongation factor
           [Methylobacterium extorquens AM1]
          Length = 154

 Score = 68.7 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 25/150 (16%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VT +G  +I+ E+   +          +S      D          K         +   
Sbjct: 30  VTPEGLAQIETEVARLE--------AELSGLSPQQD----------KADHTRVSRDLRYW 71

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
                 AE ++       R     TV   +     ++ ++IVG+ EAD  +G +S  +P+
Sbjct: 72  TARKNSAEPVEAFEGDTVRFGATVTVLREDDT---RQTFRIVGEDEADPAAGSISYVAPL 128

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
           A++L GK +GD ++VN    +  +EI ++ 
Sbjct: 129 AQSLTGKGVGDTVTVN----DHEFEIAEIR 154


>gi|227820950|ref|YP_002824920.1| transcription elongation factor regulatory protein [Sinorhizobium
           fredii NGR234]
 gi|227339949|gb|ACP24167.1| putative transcription elongation factor [Sinorhizobium fredii
           NGR234]
          Length = 160

 Score = 68.7 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G   ++ +LR  +        +  S A A  D +E       +         + 
Sbjct: 29  NLVTKAGLKALESQLRQAR--------EGYSAASAIEDANER------RRQAAGPLRDLR 74

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+++     SG+ +AFG+TV+   ++ G  + Y+IVG+ EAD + G +S  S
Sbjct: 75  YFAERVRTAQLV-PDPTSGETVAFGSTVTFS-RDDGRVQTYRIVGEDEADPKLGSISYVS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+AR L+GK  G+++S+    G++  EI+ +
Sbjct: 133 PVARILLGKANGEVVSI----GDQELEIVAI 159


>gi|325290512|ref|YP_004266693.1| GreA/GreB family elongation factor [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965913|gb|ADY56692.1| GreA/GreB family elongation factor [Syntrophobotulus glycolicus DSM
           8271]
          Length = 138

 Score = 68.7 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 47/95 (49%)

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + +LE  + RA ++    +  + I   + V L +   G++  Y +V  ++A +    +S+
Sbjct: 34  LRDLEQELNRANIVSSEEIPHESITMNSKVLLKDLALGEETIYTLVYPEDAKLSENKISV 93

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +PI  A++G   GD+I    P G     + ++L+
Sbjct: 94  LAPIGTAILGFREGDVIDWKVPAGTVQLRVEKILY 128


>gi|239820663|ref|YP_002947848.1| GreA/GreB family elongation factor [Variovorax paradoxus S110]
 gi|239805516|gb|ACS22582.1| GreA/GreB family elongation factor [Variovorax paradoxus S110]
          Length = 133

 Score = 68.7 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L +++  AEV     + G+ +   + V +V+ ++  ++   I   +EA   +GL+S+ SP
Sbjct: 31  LADLLDCAEVTSSRAVPGNIVTMCSRVEIVDAHTRRRQTLTICYPEEAKPAAGLISVLSP 90

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +   L+G ++GD     AP GE    E+  +L+
Sbjct: 91  VGTGLLGLKVGDTARWQAPNGEACAAEVAAILF 123


>gi|331644106|ref|ZP_08345235.1| transcription elongation factor GreB (Transcript cleavage
           factorgreB) [Escherichia coli H736]
 gi|331036400|gb|EGI08626.1| transcription elongation factor GreB (Transcript cleavage
           factorgreB) [Escherichia coli H736]
          Length = 114

 Score = 68.3 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 1/74 (1%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
           +  FGA V +   + G    ++IVG  E   +   +SI SP+ARAL+ KE+GD+  VN P
Sbjct: 40  KSFFGAWVEIENDD-GVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTP 98

Query: 145 GGEKTYEILQVLWI 158
            GE ++ +  + ++
Sbjct: 99  AGEASWYVNAIEYV 112


>gi|116252606|ref|YP_768444.1| transcription elongation factor regulatory protein [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257254|emb|CAK08349.1| putative transcription elongation factor [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 160

 Score = 68.3 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 22/152 (14%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE-GRM 63
             VT  G   +  EL++              +AR   D +   E    +  Q  N    +
Sbjct: 29  NLVTEAGLKAL--ELQF-------------QQAREAYDAASPIEDVNERRRQAANPLRDL 73

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A+++  +  S D +AFG+TV+   ++ G  + Y+IVG+ EAD ++G +S  
Sbjct: 74  RYLAARLRTAQLM-PAATSIDTVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYV 131

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+AR L+GK +GD +      G +  EI+ +
Sbjct: 132 SPVARLLMGKAVGDAVE----TGGQELEIIAI 159


>gi|209884060|ref|YP_002287917.1| GreA/GreB family elongation factor [Oligotropha carboxidovorans
           OM5]
 gi|209872256|gb|ACI92052.1| GreA/GreB family elongation factor [Oligotropha carboxidovorans
           OM5]
          Length = 134

 Score = 68.3 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 6/120 (5%)

Query: 37  ARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVE 96
           AR  G L   AE  A              L   I RAE+        D +A  + V+  +
Sbjct: 16  ARDAGRLRHLAEVAA-----GQYPETSEFLAREIERAEIRAADQSMRDIVAMQSEVTFRD 70

Query: 97  KNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQV 155
              G  +   +V  ++ADV +G +S+ +PI  ALIG ++G  I    P GG ++  +++V
Sbjct: 71  DIGGQARTVTLVYPEDADVAAGKISVLTPIGAALIGMQVGKSIEFQTPAGGWRSLTVIKV 130


>gi|84387295|ref|ZP_00990316.1| transcription elongation factor GreA [Vibrio splendidus 12B01]
 gi|84377942|gb|EAP94804.1| transcription elongation factor GreA [Vibrio splendidus 12B01]
          Length = 64

 Score = 68.3 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/64 (42%), Positives = 47/64 (73%)

Query: 95  VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           ++ ++ ++  YQIV + EA++++G +S+ SPIAR LIGK  GD + ++ PGG+K +EI +
Sbjct: 1   MDVDTDEEFRYQIVSEDEAEIKTGRISVKSPIARGLIGKMEGDEVIISTPGGDKDFEIDK 60

Query: 155 VLWI 158
           V +I
Sbjct: 61  VEYI 64


>gi|94312386|ref|YP_585596.1| GreA/GreB family elongation factor [Cupriavidus metallidurans CH34]
 gi|93356238|gb|ABF10327.1| regulator of nucleoside diphosphate kinase [Cupriavidus
           metallidurans CH34]
 gi|222871747|gb|EEF08878.1| predicted protein [Populus trichocarpa]
          Length = 145

 Score = 68.3 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ ++ RA ++    +  D +   + V    +     +++ +V   +AD+ +G +S+ SP
Sbjct: 43  LDALLERAAIVSPDAIPKDVVTMNSRVVCALEGEAKPRDWTLVYPDDADLATGRLSVLSP 102

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           I +AL+G   GD +    P G  +   I+++ +
Sbjct: 103 IGQALLGARSGDTVDYRLPDGRAQRVTIVEIAF 135


>gi|221065879|ref|ZP_03541984.1| GreA/GreB family elongation factor [Comamonas testosteroni KF-1]
 gi|220710902|gb|EED66270.1| GreA/GreB family elongation factor [Comamonas testosteroni KF-1]
          Length = 135

 Score = 67.9 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 45/92 (48%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RA+V+D + M  + +   +TV       G      +V  ++ D  +  VSI +P
Sbjct: 34  LEAELDRADVLDPAEMPANVVTMNSTVRFTMLEIGKSSTLTLVYPKDMDGSADKVSIFAP 93

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +  AL+G  +GD   + +P G+ T  +  + +
Sbjct: 94  VGIALLGLSVGDEFKMPSPTGQVTVRVDAIEF 125


>gi|118581250|ref|YP_902500.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM
           2379]
 gi|118503960|gb|ABL00443.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM
           2379]
          Length = 142

 Score = 67.9 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 54/98 (55%)

Query: 50  QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
           + AK   + +   + ELE  + RA+V+    +  D I   + V L + +SG++  Y +V 
Sbjct: 25  EGAKARVSRDSRNIVELEQELHRADVVAPDGIPPDVITMNSRVCLQDMDSGEELVYTLVF 84

Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
             +A+++SG +S+ +P+  A+IG   GD IS   PGG 
Sbjct: 85  PGDANLESGRISVLAPVGTAMIGYRTGDRISWPVPGGT 122


>gi|319763041|ref|YP_004126978.1| transcription elongation factor grea/greb domain-containing protein
           [Alicycliphilus denitrificans BC]
 gi|330825121|ref|YP_004388424.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans
           K601]
 gi|317117602|gb|ADV00091.1| transcription elongation factor GreA/GreB domain-containing protein
           [Alicycliphilus denitrificans BC]
 gi|329310493|gb|AEB84908.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans
           K601]
          Length = 135

 Score = 67.9 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 43/92 (46%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RA+V D   M  + +   +TV      SG      +V  +E D     VSI +P
Sbjct: 34  LEAELDRADVFDPKDMPPNVVTMNSTVRFTMLESGKTNTLTLVYPKEMDGSGDKVSIFAP 93

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +  AL+G  +GD   + +P G+ T  +  + +
Sbjct: 94  VGIALLGLAVGDEFQMPSPTGQVTVRVDGIEF 125


>gi|325105687|ref|YP_004275341.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145]
 gi|324974535|gb|ADY53519.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145]
          Length = 126

 Score = 67.9 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 51/97 (52%)

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           +    +LE  +  A+V+  + + GD +   + V +   ++     +Q+V  QEA+++   
Sbjct: 28  DFNKQKLEKELNEAKVLADAELPGDVVRLESVVKIESVDNNKTFTFQLVMPQEANMKKQK 87

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +S+ +PI  AL+G + G I+    P G K ++I+ V 
Sbjct: 88  LSVFAPIGIALLGYQTGTIVEWEMPDGVKKFKIIDVK 124


>gi|146299949|ref|YP_001194540.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae
           UW101]
 gi|146154367|gb|ABQ05221.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae
           UW101]
          Length = 132

 Score = 67.9 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 48/103 (46%)

Query: 53  KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
           K   + N     +L   + RA +   S +    I   + V++ +  +  +   QIV    
Sbjct: 21  KSKNSTNTKEANQLSQELDRAVISKESELDSSVIRINSLVTIEDVKANKQMKIQIVLPSY 80

Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           ADV+   +SI +P++ A+IG +  D +    P G KT +I+ V
Sbjct: 81  ADVKQSKISILAPLSVAIIGFKENDEVDWELPAGIKTLKIVAV 123


>gi|315127894|ref|YP_004069897.1| regulator of nucleoside diphosphate kinase [Pseudoalteromonas sp.
           SM9913]
 gi|315016408|gb|ADT69746.1| regulator of nucleoside diphosphate kinase [Pseudoalteromonas sp.
           SM9913]
          Length = 137

 Score = 67.5 bits (163), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             ELE  + RA +++   +    +   +TV+ V +++G++    +V  +  D     +SI
Sbjct: 32  EKELEAELGRANIVEPHEVPSTVVTMNSTVNFVVESTGEEFTLTLVYPKNIDSSGNKISI 91

Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
            +P+  AL+G   GD I    P GG  T  I +V +
Sbjct: 92  LAPVGSALLGLSQGDQIEWPKPGGGLITVAIKEVTY 127


>gi|30250064|ref|NP_842134.1| transcription elongation factor GreA/GreB [Nitrosomonas europaea
           ATCC 19718]
 gi|30139171|emb|CAD86041.1| Prokaryotic transcription elongation factor GreA/GreB [Nitrosomonas
           europaea ATCC 19718]
          Length = 137

 Score = 67.5 bits (163), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LE  + RAEV+D   +    +   +TV    ++S ++    +V  ++ D     +SI +
Sbjct: 34  DLEAELARAEVVDPEEIPPTVVTMNSTVRFRVESSAEEFCLTLVYPKDVDTSGEKISILA 93

Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
           P+  AL+G   GD I    P GG     I++V +
Sbjct: 94  PVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY 127


>gi|299132174|ref|ZP_07025369.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2]
 gi|298592311|gb|EFI52511.1| GreA/GreB family elongation factor [Afipia sp. 1NLS2]
          Length = 134

 Score = 67.5 bits (163), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 1/122 (0%)

Query: 37  ARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVE 96
           A A      +     A+   +        L   I RAE+        D +A  + V+  +
Sbjct: 11  AIAISVRDADRLRHLAEVAADRYPETAEFLAQEIERAEIRSADQSMRDIVAMQSEVTFRD 70

Query: 97  KNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQV 155
              G  +   +V  ++ADV +G +S+ +PI  ALIG  +G  I    P GG ++  + +V
Sbjct: 71  DIGGQSRTVTLVYPEDADVGAGKISVLTPIGAALIGMSVGKSIEFQTPAGGWRSLTVTKV 130

Query: 156 LW 157
           L 
Sbjct: 131 LH 132


>gi|85859428|ref|YP_461630.1| transcription elongation factor [Syntrophus aciditrophicus SB]
 gi|85722519|gb|ABC77462.1| transcription elongation factor [Syntrophus aciditrophicus SB]
          Length = 134

 Score = 67.5 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 61/156 (39%), Gaps = 36/156 (23%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            +I VT +  ++++  L   ++ E                                    
Sbjct: 4   RRIYVTEQDMERLEDLLETSKKSE-----------------------------------Y 28

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
              LE  +  A V+    M  D +   + V   +  +G+++   +V   +A++ SG VS+
Sbjct: 29  ARSLEAELVNAVVVPSEEMPPDVVTMNSCVCFEDLTTGNRETITLVYPGQANMASGRVSV 88

Query: 123 SSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
            +P+  ALIG  +G  I    P G ++   I++VL+
Sbjct: 89  LAPVGSALIGLSVGQTIEWPMPNGRKRRLRIVEVLY 124


>gi|75675115|ref|YP_317536.1| transcription elongation factor GreA/GreB region [Nitrobacter
           winogradskyi Nb-255]
 gi|74419985|gb|ABA04184.1| GreA/GreB family elongation factor [Nitrobacter winogradskyi
           Nb-255]
          Length = 151

 Score = 67.5 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 7/142 (4%)

Query: 19  LRWRQQEERPRIIKAISEARAYGDLSENAEYQA-AKELQNLNEGRMAELENIITRAEVID 77
           L   ++   P I  +  +      L+E A  +  A       E   AE+         +D
Sbjct: 2   LDNLKKTHLPAIAISAHDIDRLRHLAEAAIEKYPATAEFLAREIDRAEIIPADGSL--LD 59

Query: 78  ISTMSGDRIA---FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134
            +     ++      + V+ ++  SG K+   +V  ++ADV +G +SI SPI  ALIG  
Sbjct: 60  DTRDQRWKVNLVTMQSEVTFIDDVSGQKRRVTLVYPEDADVDAGKISILSPIGAALIGLS 119

Query: 135 LGDIISVNAP-GGEKTYEILQV 155
            G  I    P GG ++  ++ V
Sbjct: 120 AGQSIEFQTPSGGWRSLTVIAV 141


>gi|91976219|ref|YP_568878.1| transcription elongation factor regulatory protein
           [Rhodopseudomonas palustris BisB5]
 gi|91682675|gb|ABE38977.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           BisB5]
          Length = 160

 Score = 67.5 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT+ G   ++ +L             A   A+A  D++E       +  + +      
Sbjct: 29  NLVTAAGMKALEAQL--------QAARDACEAAKAIEDVNER------RRQEAIPSRDAR 74

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A++I     + D +AFG+TV+   +  G  + Y+IVG+ EAD + G +S  S
Sbjct: 75  YFATRVRTAQLI-ADPTTADVVAFGSTVTFK-RADGRVQTYRIVGEDEADPKVGSISFVS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+AR L+GK +GD+    A  GE+  EI+ +
Sbjct: 133 PVARLLMGKAVGDV----AGAGEQELEIIAI 159


>gi|264679555|ref|YP_003279462.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2]
 gi|299530414|ref|ZP_07043837.1| GreA/GreB family elongation factor [Comamonas testosteroni S44]
 gi|262210068|gb|ACY34166.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2]
 gi|298721639|gb|EFI62573.1| GreA/GreB family elongation factor [Comamonas testosteroni S44]
          Length = 135

 Score = 67.5 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 44/92 (47%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RA+V+D + +  + +   +TV              +V  ++ D  +  VSI +P
Sbjct: 34  LEAELDRADVLDPAEIPANVVTMNSTVRFTILEIAKTNTLTLVYPKDMDGSADKVSIFAP 93

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +  AL+G  +GD   + +P G+ T  +  + +
Sbjct: 94  VGIALLGLSVGDEFKMPSPTGQVTVRVDAIEF 125


>gi|121595126|ref|YP_987022.1| GreA/GreB family elongation factor [Acidovorax sp. JS42]
 gi|120607206|gb|ABM42946.1| GreA/GreB family elongation factor [Acidovorax sp. JS42]
          Length = 135

 Score = 67.5 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 43/92 (46%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RA+V D   M  + +   +TV      +G      +V  +E D     VS+ +P
Sbjct: 34  LEAELDRADVFDPKDMPPNVVTMNSTVRFTLLETGKTNTLTLVYPKEMDGSGDKVSVFAP 93

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +  AL+G  +GD   + +P G+ T  +  + +
Sbjct: 94  VGIALLGLGVGDEFQMPSPTGQVTVRVDAIEF 125


>gi|56476179|ref|YP_157768.1| transcription elongation factor [Aromatoleum aromaticum EbN1]
 gi|56312222|emb|CAI06867.1| Transcription elongation factor [Aromatoleum aromaticum EbN1]
          Length = 158

 Score = 67.1 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +L   + RA V+    +    +   + V  +++ SG+++  Q+V  +EADV +G VS+ +
Sbjct: 57  QLRAELERAVVVPPDFLPRHVVTMHSRVRYLDEASGEQREIQVVYPEEADVAAGKVSVFA 116

Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           P+  AL+G  +  +I  + P G  +   + +VL 
Sbjct: 117 PVGAALLGLSVDQVIEWDFPRGPRRRLRVEEVLH 150


>gi|149243253|pdb|2PN0|A Chain A, Prokaryotic Transcription Elongation Factor GreaGREB FROM
           Nitrosomonas Europaea
 gi|149243254|pdb|2PN0|B Chain B, Prokaryotic Transcription Elongation Factor GreaGREB FROM
           Nitrosomonas Europaea
 gi|149243255|pdb|2PN0|C Chain C, Prokaryotic Transcription Elongation Factor GreaGREB FROM
           Nitrosomonas Europaea
 gi|149243256|pdb|2PN0|D Chain D, Prokaryotic Transcription Elongation Factor GreaGREB FROM
           Nitrosomonas Europaea
          Length = 141

 Score = 67.1 bits (162), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LE  + RAEV+D   +    +   +TV    ++S ++    +V  ++ D     +SI +
Sbjct: 36  DLEAELARAEVVDPEEIPPTVVTXNSTVRFRVESSAEEFXLTLVYPKDVDTSGEKISILA 95

Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
           P+  AL+G   GD I    P GG     I++V +
Sbjct: 96  PVGSALLGLAQGDEIEWPKPGGGVLRVRIVEVTY 129


>gi|323135884|ref|ZP_08070967.1| GreA/GreB family elongation factor [Methylocystis sp. ATCC 49242]
 gi|322398975|gb|EFY01494.1| GreA/GreB family elongation factor [Methylocystis sp. ATCC 49242]
          Length = 155

 Score = 67.1 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 20/138 (14%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VT +G ++I++EL     E        I +A A  D               L +  +
Sbjct: 27  RNLVTPEGLEQIERELHRLHGE--------IEKATANDDN----------HALALAQRDL 68

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                    AEVI               V  +E   G+++ +++VG+ EAD   GL+   
Sbjct: 69  RYWTARRASAEVIRPIADHSHVRFGHRVVVELEG--GERRAFRLVGEDEADPAKGLIPYV 126

Query: 124 SPIARALIGKELGDIISV 141
           +P+A AL+GK +GD   V
Sbjct: 127 APLATALMGKTVGDKAEV 144


>gi|331696133|ref|YP_004332372.1| GreA/GreB family elongation factor [Pseudonocardia dioxanivorans
           CB1190]
 gi|326950822|gb|AEA24519.1| GreA/GreB family elongation factor [Pseudonocardia dioxanivorans
           CB1190]
          Length = 169

 Score = 66.7 bits (161), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 60/152 (39%), Gaps = 7/152 (4%)

Query: 1   MVDK-IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M ++ + +    + +++ EL    + +R    +  +     GD +++         +   
Sbjct: 1   MTEEAVWLAEIAYQRLRNELAELLR-QRAEGAEGGAGDHLVGDSADSTGDHQRLTDRRER 59

Query: 60  EGRMAELENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           + R+ +L+ ++ +A    D             TV   E      + + +   +E      
Sbjct: 60  DNRIRKLQELLQKAIVSHDPPDDGVAEPGMLLTVRYEEDQES--ETFLLSHYEEGAYPDD 117

Query: 119 LV--SISSPIARALIGKELGDIISVNAPGGEK 148
            +  S  SP+  A++GK+ GD I  + P GE+
Sbjct: 118 FMTCSPDSPLGSAVLGKKEGDRIEYSLPNGER 149


>gi|241765275|ref|ZP_04763255.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN]
 gi|241365031|gb|EER59928.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN]
          Length = 137

 Score = 66.7 bits (161), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
            AEL+  + RA+V+    +  + +   +TV      +G +    +V  ++ D  +  +SI
Sbjct: 32  KAELQAELDRADVVAPEEIPPNVVTMNSTVQFTMLETGKEFCLTLVYPRDMDGSADRISI 91

Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
            +P+  AL+G  +GD ++   PGG+  T  +  +++
Sbjct: 92  LAPVGGALLGLSVGDELAWPGPGGKSMTVRVKAIVY 127


>gi|319952551|ref|YP_004163818.1| grea/greb family elongation factor [Cellulophaga algicola DSM
           14237]
 gi|319421211|gb|ADV48320.1| GreA/GreB family elongation factor [Cellulophaga algicola DSM
           14237]
          Length = 139

 Score = 66.7 bits (161), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 1/98 (1%)

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            +  + +L   ++ A+V + + M  D I F + V++   N+G  K +Q+V  +++D+++ 
Sbjct: 31  FKKSIRKLSEELSFAKVCNNNEMPKDVIRFNSIVTIT-ANNGWTKEFQLVTPKDSDLKNN 89

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            VSI +P+  A+IG   GD IS   P GE+   + +V 
Sbjct: 90  KVSILTPMGAAVIGYAEGDTISWEFPSGEQQLTVSKVE 127


>gi|213162024|ref|ZP_03347734.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 47

 Score = 66.7 bits (161), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/47 (48%), Positives = 35/47 (74%)

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           EAD +  L+S++SPIAR LIGKE  D++ +  PGG+  YE+L+V ++
Sbjct: 1   EADFKQNLISVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 47


>gi|307069596|ref|YP_003878073.1| putative transcription elongation factor GreA [Candidatus Zinderia
           insecticola CARI]
 gi|306482856|gb|ADM89727.1| putative transcription elongation factor GreA [Candidatus Zinderia
           insecticola CARI]
          Length = 157

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 2/137 (1%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           K  +T  G+ K+  E     + ++  +IK I  AR+ GDLSEN++++ AKE + + E ++
Sbjct: 2   KNLITKNGY-KLFIEKINNFKNKKKNLIKEIEIARSNGDLSENSDFKIAKEKKYILEKKI 60

Query: 64  AELENIITRAEVIDI-STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
             LE  I   ++ID     + D+I F   + L    +  K   QIVGD E++ +   +SI
Sbjct: 61  LILEKKINNFKIIDPLYIKNKDKIFFSCKLKLFCYLNKKKIKLQIVGDCESNFKKNKISI 120

Query: 123 SSPIARALIGKELGDII 139
            S +++ LI K++ D I
Sbjct: 121 LSKLSKVLIKKKINDKI 137


>gi|254231364|ref|ZP_04924691.1| transcription elongation factor greA (transcript cleavage factor
          greA ) [Mycobacterium tuberculosis C]
 gi|124600423|gb|EAY59433.1| transcription elongation factor greA (transcript cleavage factor
          greA ) [Mycobacterium tuberculosis C]
          Length = 110

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 1  MVDK--IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
          M D     +T +  D+++ EL       RP I   I++ R  GDL EN  Y AA+E Q  
Sbjct: 1  MTDTQVTWLTQESHDRLKAELDQLIAN-RPVIAAEINDRREEGDLRENGGYHAAREEQGQ 59

Query: 59 NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLV 95
           E R+ +L+++++ A+V +    SG  +         
Sbjct: 60 QEARIRQLQDLLSNAKVGEAPKQSGVALPGSVVKVYY 96


>gi|152995644|ref|YP_001340479.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1]
 gi|150836568|gb|ABR70544.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1]
          Length = 137

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +L+  I RAE+++   M  + +   +TV+    +S  + +  +V  ++A+     VS+ +
Sbjct: 34  DLQEEINRAEIVEPRDMPDNIVTMNSTVTFKVLSSEKEFSKTLVYPKDANGAEDTVSVLA 93

Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           P+  AL+G + GD I    P G+  +  I++V +
Sbjct: 94  PVGSALLGLKEGDQIDWPKPNGDVLSVVIMKVDY 127


>gi|190572883|ref|YP_001970728.1| putative regulator of nucleoside diphosphate kinase
           [Stenotrophomonas maltophilia K279a]
 gi|190010805|emb|CAQ44414.1| putative regulator of nucleoside diphosphate kinase
           [Stenotrophomonas maltophilia K279a]
          Length = 134

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA V+    +    +   + V   ++ SG+K    +V  +EA+V  G VS+ +P
Sbjct: 39  LAEELNRATVLAPDQIPEGIVMMHSRVECEDEVSGEKHVLTLVFPREANVDEGKVSVLAP 98

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQV 155
           +  AL+G  +G  I  NAPGG K    +  V
Sbjct: 99  VGSALLGLSIGQSIDWNAPGGRKLRLRVTAV 129


>gi|194364464|ref|YP_002027074.1| GreA/GreB family elongation factor [Stenotrophomonas maltophilia
           R551-3]
 gi|194347268|gb|ACF50391.1| GreA/GreB family elongation factor [Stenotrophomonas maltophilia
           R551-3]
          Length = 134

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA V+    +    +   + V   ++ SG+K    +V  +EA+V  G VS+ +P
Sbjct: 39  LAEELNRATVLAPDQIPEGIVMMHSRVECEDEVSGEKHVLTLVFPREANVDEGKVSVLAP 98

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQV 155
           +  AL+G  +G  I  NAPGG K    +  V
Sbjct: 99  VGSALLGLSIGQSIDWNAPGGRKLRLRVTAV 129


>gi|108802197|ref|YP_642394.1| GreA/GreB family elongation factor [Mycobacterium sp. MCS]
 gi|119871350|ref|YP_941302.1| GreA/GreB family elongation factor [Mycobacterium sp. KMS]
 gi|126438179|ref|YP_001073870.1| GreA/GreB family elongation factor [Mycobacterium sp. JLS]
 gi|108772616|gb|ABG11338.1| GreA/GreB family elongation factor [Mycobacterium sp. MCS]
 gi|119697439|gb|ABL94512.1| GreA/GreB family elongation factor [Mycobacterium sp. KMS]
 gi|126237979|gb|ABO01380.1| GreA/GreB family elongation factor [Mycobacterium sp. JLS]
          Length = 153

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 15/145 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             ++ +T   + ++Q EL   +                  D  EN        +Q   + 
Sbjct: 4   AQRVWMTPVAYRRLQDELTELRTLIANEAPD---------DGQENT-----VAVQRARQT 49

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ++ +++  A V +           G  +++    +GD++ + +           + S
Sbjct: 50  RIQQIHDLLLNAVVGEDPPDD-GVAEPGMVLTVRFDQTGDEETFLLGVRGAEYGDLEVYS 108

Query: 122 ISSPIARALIGKELGDIISVNAPGG 146
           +SSP+  ALIG   GD  +   P G
Sbjct: 109 VSSPLGEALIGARPGDRRTYEVPSG 133


>gi|332716346|ref|YP_004443812.1| Transcription elongation factor [Agrobacterium sp. H13-3]
 gi|325063031|gb|ADY66721.1| Transcription elongation factor [Agrobacterium sp. H13-3]
          Length = 163

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 20/152 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G   ++Q+L            +A   A A  D++E       + L       + 
Sbjct: 32  NLVTEAGLKALEQQL--------QLAREACETANAVEDVNER------RRLSANPLRDIR 77

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+++  S  +   +AFG+ V+   ++ G  + ++IVG+ EAD  +G +S  S
Sbjct: 78  YFAERVRTAQLM-PSPPADGTVAFGSVVTFS-RDDGRTQRFRIVGEDEADPANGSMSYVS 135

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+A  L+GK  GD++S+    G K  EI++V 
Sbjct: 136 PVAGLLMGKSAGDVVSL----GGKEIEIIEVT 163


>gi|159185796|ref|NP_357050.2| transcription elongation factor regulatory protein [Agrobacterium
           tumefaciens str. C58]
 gi|159140930|gb|AAK89835.2| transcription elongation factor [Agrobacterium tumefaciens str.
           C58]
          Length = 160

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 22/152 (14%)

Query: 5   IPVTSKGFDKIQQELR-WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
             VT  G   ++Q+L+  RQ  E    I+ I+E R                        M
Sbjct: 29  NLVTQAGLKALEQQLQLARQACEAANAIEDINERRRLS---------------ASPLRDM 73

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                 +  A+++     +   +AFG+ V+   ++ G  + ++IVG+ EAD  +G +S  
Sbjct: 74  RYFAERVRTAQLM-PDPQADGVVAFGSLVTFS-RDDGRTQRFRIVGEDEADPAAGTMSYV 131

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+AR L+GK +GD++S+    G +  EI+ V
Sbjct: 132 SPVARVLMGKTIGDVVSL---AG-REIEIIDV 159


>gi|108762200|ref|YP_632099.1| regulator of nucleoside diphosphate kinase [Myxococcus xanthus DK
           1622]
 gi|108466080|gb|ABF91265.1| regulator of nucleoside diphosphate kinase [Myxococcus xanthus DK
           1622]
          Length = 138

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  +TRA V+    +  D +   + V   ++ SG+++   +V  ++A    G +S+ +P
Sbjct: 36  LDAELTRARVVASEEVPPDVVTMNSKVVFEDEQSGERREVTLVYPRDASSDDGRISVLAP 95

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           I  ALIG  +G  I+   PGG  K   I+ V +
Sbjct: 96  IGSALIGLTVGQTITWPLPGGRSKRLRIVAVPY 128


>gi|255596472|ref|XP_002536547.1| Transcription elongation factor greA, putative [Ricinus communis]
 gi|223519331|gb|EEF25837.1| Transcription elongation factor greA, putative [Ricinus communis]
          Length = 196

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 22/153 (14%)

Query: 5   IPVTSKGFDKIQQELRW-RQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
             VT  G   ++ +L+  R+  E    I+ I+E R    +                    
Sbjct: 65  NRVTEAGLKALELQLQDARKAYEAASAIEDINERRRQTAIPL---------------RDA 109

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                 +  AEV+  +  S + + FG+TV+   +  G  + Y+IVG+ EAD ++G +S  
Sbjct: 110 RYFAERVRTAEVM-PAPASSEVVVFGSTVTYS-REDGRVQKYRIVGEDEADPKAGSISYV 167

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           SP+AR L+GK +GDI+++    G++  EI  + 
Sbjct: 168 SPVARLLMGKTVGDILTL----GKEELEITAIE 196


>gi|90420487|ref|ZP_01228394.1| possible transcription elongation factor, GreA/GreB family
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90335215|gb|EAS48968.1| possible transcription elongation factor, GreA/GreB family
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 158

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 59/154 (38%), Gaps = 24/154 (15%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            +   VT +G   I  E+    + +         EA    D          K        
Sbjct: 24  TEPNLVTPRGLSLIDAEIAALNERK---------EAARQADD---------KIAIANINR 65

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +         AE+I      G       +V  +E+  G  + + IVG  EAD  +GL+S
Sbjct: 66  DLRYWNARRATAELIRPRDTGGTAQF--GSVVSIEREDGRTQQFTIVGIDEADPSAGLIS 123

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             SP+AR+LIG+ +GDI+      G    EI+ +
Sbjct: 124 YLSPLARSLIGRTVGDIVR----AGTADAEIIAI 153


>gi|297617314|ref|YP_003702473.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297145151|gb|ADI01908.1| GreA/GreB family elongation factor [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 150

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 53/107 (49%)

Query: 50  QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
           +   E + L E  + +++ +I + +    +      +  G+ V +   +  +   Y+I+ 
Sbjct: 38  KERDEFEILLENYIKQVDELIRKVKKSSKAGNKLPFVTIGSEVEIQNLSDKETHKYRIIT 97

Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
                V+ G +S  SP+ ++L+ +++GD+I V APGG   Y+I  + 
Sbjct: 98  PFRGSVKDGDISYLSPVGKSLLLRKVGDVIEVKAPGGIFHYKIKSIR 144


>gi|254818888|ref|ZP_05223889.1| transcription elongation factor GreA [Mycobacterium intracellulare
           ATCC 13950]
          Length = 165

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 59/152 (38%), Gaps = 12/152 (7%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            +I +T + + ++  EL   +      +   + +                +  Q++   R
Sbjct: 5   QRIRMTPQDYTRLHDELAGLRSRRGAEVPDDLMDYNPN-----------RRARQSVWRAR 53

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + E+E +++ A V+            G  +++   ++G+ +   +      D      S+
Sbjct: 54  ICEIEGLLSHAVVVGEGAAFDPVAEAGMVLTIRYDDTGETETLLLGRPCPEDAGIKAYSM 113

Query: 123 SSPIARALIGKELGDIISVNAPGGE-KTYEIL 153
           +SP+ RA+ G   GD      PGG  ++  +L
Sbjct: 114 ASPLGRAIAGARPGDQRFYAIPGGTGRSVTVL 145


>gi|218680300|ref|ZP_03528197.1| transcription elongation factor regulatory protein [Rhizobium etli
           CIAT 894]
          Length = 160

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G   +  EL+++Q  E       I +                +         + 
Sbjct: 29  NLVTEAGLRAL--ELQFQQAREAYDAANTIDDVNER------------RRQAAGPLRDLR 74

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L+  +  A+++     S D +AFG+TV+   ++ G  + Y+IVG+ EAD ++G +S  S
Sbjct: 75  YLKARLRTAQLM-ADASSTDAVAFGSTVTFR-RDDGRVQTYRIVGEDEADPKAGSISYVS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+AR L+GK +GD+       G +  EI+ +
Sbjct: 133 PVARLLMGKAVGDVAE----TGGQELEIIAI 159


>gi|260062078|ref|YP_003195158.1| nucleoside diphosphate kinase regulator [Robiginitalea biformata
           HTCC2501]
 gi|88783640|gb|EAR14811.1| nucleoside diphosphate kinase regulator [Robiginitalea biformata
           HTCC2501]
          Length = 139

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
             + +L   +  A+++D + M  D + F + +++    +G  +  Q+V   E DV    +
Sbjct: 33  QSIQKLLTELDSAKIVDEAEMQNDVVRFHSIITVT-SENGWSRRVQLVLPPERDVSKDKI 91

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           SI +P+  AL G   GD +S   P G K   I +V 
Sbjct: 92  SILTPMGIALFGYAEGDTVSWEFPSGPKRLRIEKVE 127


>gi|146343253|ref|YP_001208301.1| transcription elongation factor regulatory protein [Bradyrhizobium
           sp. ORS278]
 gi|146196059|emb|CAL80086.1| putative transcription elongation factor (greB) (Transcript
           cleavage factor greB) [Bradyrhizobium sp. ORS278]
          Length = 174

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G   ++ +L                   AY      A+    +    L      
Sbjct: 43  NLVTETGLKALEDQLH--------------QAQAAYEAAQAIADVNERRRESALPLRDAR 88

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+++     S   IAFG+TV+   +  G  + Y+IVG+ EAD + G +S  S
Sbjct: 89  YFAARLRTAQLM-PPPSSTAAIAFGSTVTFR-RGDGRTQTYRIVGEDEADPKHGTISHVS 146

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+AR L+GK  GD++ V      +  EIL++
Sbjct: 147 PVARRLMGKTAGDVVEVT----GQELEILRI 173


>gi|222111468|ref|YP_002553732.1| grea/greb family elongation factor [Acidovorax ebreus TPSY]
 gi|221730912|gb|ACM33732.1| GreA/GreB family elongation factor [Acidovorax ebreus TPSY]
          Length = 135

 Score = 66.0 bits (159), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 43/92 (46%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RA+V D   M  + +   +TV      +G      +V  +E D     VS+ +P
Sbjct: 34  LEAELDRADVFDPKDMPPNVVTMNSTVRFTLLETGKTNTLTLVYPKEMDGSGDKVSVFAP 93

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +  AL+G  +GD   + +P G+ T  +  + +
Sbjct: 94  VGIALLGLGVGDEFQMPSPTGQVTVRVDAIDF 125


>gi|254521305|ref|ZP_05133360.1| regulator of nucleoside diphosphate kinase [Stenotrophomonas sp.
           SKA14]
 gi|219718896|gb|EED37421.1| regulator of nucleoside diphosphate kinase [Stenotrophomonas sp.
           SKA14]
          Length = 134

 Score = 66.0 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA V+    +    +   + V   ++ SG+K    +V  +EA+V  G VS+ +P
Sbjct: 39  LAEELNRATVLAPDQIPEGIVMMHSRVECEDEVSGEKHVLTLVFPREANVDEGKVSVLAP 98

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQV 155
           +  AL+G  +G  I  NAPGG K    +  V
Sbjct: 99  VGSALLGLAIGQSIDWNAPGGRKLRLRVTAV 129


>gi|325982230|ref|YP_004294632.1| GreA/GreB family elongation factor [Nitrosomonas sp. AL212]
 gi|325531749|gb|ADZ26470.1| GreA/GreB family elongation factor [Nitrosomonas sp. AL212]
          Length = 136

 Score = 66.0 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + I RA V++ + +  D I   +T+  V+  +G +    +V   EA    G +SI++P
Sbjct: 35  LIDEIDRASVVEPTEVPSDVITMNSTIRFVDDMNGSEHQLTLVYPDEA-GAHGTISIAAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQV 155
           +  AL+G  +G  I    PGG E    +L+V
Sbjct: 94  VGSALLGLSVGQSIRWQVPGGRELNLRVLEV 124


>gi|256829378|ref|YP_003158106.1| GreA/GreB family elongation factor [Desulfomicrobium baculatum DSM
           4028]
 gi|256578554|gb|ACU89690.1| GreA/GreB family elongation factor [Desulfomicrobium baculatum DSM
           4028]
          Length = 137

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RA ++D   +    +   +TV      +G++    +V     D Q   +SI +P
Sbjct: 35  LEEELDRARIVDPKNVPPTVVTMNSTVKFKLMPAGEEFCLTLVYPGRVDDQGTTISILAP 94

Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
           +  AL+G  LGD I    P GG     I ++++
Sbjct: 95  VGSALLGLSLGDEIQWPRPGGGMLQVRIEEIVY 127


>gi|58427865|gb|AAW76902.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 252

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 48/135 (35%), Gaps = 6/135 (4%)

Query: 19  LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE------LENIITR 72
           L       R         +      S  + +  A+    L+     +      L + + R
Sbjct: 97  LAVLASRIRQETAMTSQHSSGLPPSSLVSSHDLARREALLDSPSFNKHPAATALSDELGR 156

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
           A V+    + GD +   + +   ++  G +     V   EADVQ G + + +P+  AL G
Sbjct: 157 ARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAPVGSALGG 216

Query: 133 KELGDIISVNAPGGE 147
             +G  I    P G 
Sbjct: 217 LSVGQRIDWRTPDGR 231


>gi|149279968|ref|ZP_01886094.1| nucleoside diphosphate kinase regulator protein, putative
           [Pedobacter sp. BAL39]
 gi|149229348|gb|EDM34741.1| nucleoside diphosphate kinase regulator protein, putative
           [Pedobacter sp. BAL39]
          Length = 129

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 47/90 (52%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   ++RA ++       D I   +TV + ++++G+     IV  Q A+++   +S+ +P
Sbjct: 35  LSAELSRAVILSNEEFPSDAIRLNSTVRIQDESTGEIMELIIVLPQHANIKEKKISVLTP 94

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           IA ALIG   GD +    P G K + I +V
Sbjct: 95  IAAALIGFRQGDAVQWKVPAGLKNFRITEV 124


>gi|13476329|ref|NP_107899.1| transcription elongation factor greA [Mesorhizobium loti
           MAFF303099]
 gi|14027090|dbj|BAB54044.1| transcription elongation factor; GreA [Mesorhizobium loti
           MAFF303099]
          Length = 157

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 24/151 (15%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VT +G  +I+  L   +                  D+   AE +A +E   +    +
Sbjct: 27  RNLVTERGLAQIEDNLAELR------------------DILAKAERKADRERIAVVSRDL 68

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                    AE+      S D + FG  V+L E + G K +++IVG+ EAD   G +S  
Sbjct: 69  RYWTARRENAELSVPEPGS-DVVRFGMGVTL-EADDGKKVHWKIVGEDEADPTKGSISHV 126

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           SP+A AL GK++GD+ +VN     K +EI++
Sbjct: 127 SPMAVALFGKKVGDVAAVN----GKEWEIVK 153


>gi|91975331|ref|YP_567990.1| transcription elongation factor GreA/GreB region [Rhodopseudomonas
           palustris BisB5]
 gi|91681787|gb|ABE38089.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           BisB5]
          Length = 138

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 1/103 (0%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A+   +        L   I RAE++  S +    I  G+ V+  +  SG ++   +V  +
Sbjct: 26  AEAASDKYPQTADFLAREIERAEILPDSQLLPGLIMMGSEVTFRDDISGQERCVTLVYPE 85

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEIL 153
            ADV++  +SI +PI  ALIG   G  I    PGG  ++  ++
Sbjct: 86  AADVEANKISIITPIGAALIGLSAGQTIEFQTPGGRWRSLTVI 128


>gi|154246865|ref|YP_001417823.1| transcription elongation factor regulatory protein [Xanthobacter
           autotrophicus Py2]
 gi|154160950|gb|ABS68166.1| GreA/GreB family elongation factor [Xanthobacter autotrophicus Py2]
          Length = 158

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 21/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G   +                 A+ EARA   L++  + QA +         + 
Sbjct: 28  NLVTPTGMAALDA---------------ALGEARAAYALAQMGDVQADRMAMARATRDLR 72

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                   A++I+          FGATV++  +  G ++ ++IVG+ EAD   G VS  S
Sbjct: 73  YYSARRASAQLIEAVAHPQSV-QFGATVTIS-REDGRRQVFRIVGEDEADPAKGSVSYVS 130

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+A+AL+ K +GD+  V    G +  E+L++
Sbjct: 131 PLAKALMSKVVGDVALV---AG-REVEVLEI 157


>gi|255531969|ref|YP_003092341.1| transcription elongation factor GreA/GreB domain-containing protein
           [Pedobacter heparinus DSM 2366]
 gi|255344953|gb|ACU04279.1| transcription elongation factor GreA/GreB domain protein
           [Pedobacter heparinus DSM 2366]
          Length = 125

 Score = 65.2 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 51/102 (50%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           E  N++     +L+  +  A +     +  D +   +   +    +G +  +++V  +EA
Sbjct: 21  EKSNMSAYNKEKLQAELKAATIYTEEELPSDVVCLKSEARIANVKTGKEFTFKLVMPEEA 80

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           ++++  VS+ +PI  AL G   GD I+   P G + ++IL+V
Sbjct: 81  NIKAQKVSVFAPIGIALFGYRTGDSINWEMPDGIQEFKILEV 122


>gi|110835187|ref|YP_694046.1| nucleoside diphosphate kinase regulator [Alcanivorax borkumensis
           SK2]
 gi|110648298|emb|CAL17774.1| nucleoside diphosphate kinase regulator [Alcanivorax borkumensis
           SK2]
          Length = 133

 Score = 65.2 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 3/93 (3%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RA V++   M  D +   + +   E+  G +    +V     D     VSI +P
Sbjct: 31  LEEELLRATVVEPKDMPADVVTMNSRIRCREQGRGREMCLTLVYPH--DTGPQRVSILAP 88

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G  +G  I   AP G+    EIL V +
Sbjct: 89  VGAALLGLSVGQSIDWPAPNGKVLKLEILAVEY 121


>gi|91215744|ref|ZP_01252714.1| transcription elongation factor GreB [Psychroflexus torquis ATCC
           700755]
 gi|91186210|gb|EAS72583.1| transcription elongation factor GreB [Psychroflexus torquis ATCC
           700755]
          Length = 164

 Score = 65.2 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/153 (21%), Positives = 70/153 (45%), Gaps = 17/153 (11%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT +G + +++E    +++     I+  +E R                   + +G++ 
Sbjct: 29  NYVTPQGKEMLREEKSKLEKQRADLTIQDDTERR---------------RELTVIDGKLK 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L+  +  A+V++    +   I FGA V    K +G  ++++IVG  EA+++   ++ +S
Sbjct: 74  LLDERLNSAQVLNPEQQNKSEIRFGAHV--KFKMNGSIQDFKIVGVDEANIKEKKIAFTS 131

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           P+A A+  K+ GD          +  EIL + +
Sbjct: 132 PLAMAMTSKKKGDNFEFKLSQDSRPIEILGINY 164


>gi|83592278|ref|YP_426030.1| nucleoside diphosphate kinase regulator [Rhodospirillum rubrum ATCC
           11170]
 gi|83575192|gb|ABC21743.1| GreA/GreB family elongation factor [Rhodospirillum rubrum ATCC
           11170]
          Length = 136

 Score = 65.2 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A             L   I RA V+   ++  D +  GA V+  ++++G  +   +V   
Sbjct: 28  ALRALAGAPDLAGRLLAEIDRARVLPSESVPADVVTLGAEVTFRDESTGRVRKVTLVYPG 87

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           EAD+  G +SI +PI  ALIG  +G  I      G E+   +L V 
Sbjct: 88  EADIDQGKISIMTPIGVALIGLAVGASIDWLTRDGDERHLSVLAVR 133


>gi|260462428|ref|ZP_05810636.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum
           WSM2075]
 gi|259031922|gb|EEW33190.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum
           WSM2075]
          Length = 157

 Score = 64.8 bits (156), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 24/151 (15%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VT +G  +I+  L   +                  D+   AE +  +E   +    +
Sbjct: 27  RNLVTERGLAQIEDNLSDLR------------------DILAKAERKGDRERIAVVSRDL 68

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                    AE+      S     FG  V+L E + G K +++IVG+ EA+   G +S  
Sbjct: 69  RYWNARRESAELSVPEPGSDLV-RFGMGVTL-EGDDGRKVHWKIVGEDEANPSKGSISHV 126

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           SP+A AL GK++G++++VN     K +EI++
Sbjct: 127 SPMAVALFGKKVGEVVTVN----GKEWEIVK 153


>gi|331697299|ref|YP_004333538.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans
           CB1190]
 gi|326951988|gb|AEA25685.1| transcription elongation factor GreA [Pseudonocardia dioxanivorans
           CB1190]
          Length = 151

 Score = 64.8 bits (156), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 5/144 (3%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
             + +EL   +   R      IS+     D  E+    A ++  +  + R+ +L + +  
Sbjct: 10  HALLEELDLLRARRRELEWSLISDDHRPHDFGEHGATTALRDEIDWVDRRIRDLVHQVWE 69

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
           A   D  T     +    +V  +    G  +  Q+    + DV +  V+  SP+ RAL+G
Sbjct: 70  AGRPDGDTSERVGLY---SVVTLRFPDGSSETLQVTRFPDEDVPA--VTPESPLGRALLG 124

Query: 133 KELGDIISVNAPGGEKTYEILQVL 156
            + GD I+  AP G     + +V 
Sbjct: 125 AQPGDEITWKAPDGRLRARVERVR 148


>gi|240140105|ref|YP_002964582.1| putative transcription elongation factor (GreA/GreB domain protein)
           [Methylobacterium extorquens AM1]
 gi|240010079|gb|ACS41305.1| Putative transcription elongation factor (GreA/GreB domain protein)
           [Methylobacterium extorquens AM1]
          Length = 107

 Score = 64.8 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           A L + + R +++       D    G+ V   + ++G  ++  +V   EAD++ G +SI 
Sbjct: 9   AFLSDELDRVQIVRGGAAQRDFARMGSRVDFRDNSTGRTQSVTLVYPGEADIEQGKISIL 68

Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
           +PI  ALIG   G  I      GE +   +L+V 
Sbjct: 69  TPIGAALIGLSEGQSIDWATRTGETRRLTVLEVR 102


>gi|300790568|ref|YP_003770859.1| transcription elongation factor GreA [Amycolatopsis mediterranei
           U32]
 gi|299800082|gb|ADJ50457.1| transcription elongation factor GreA [Amycolatopsis mediterranei
           U32]
          Length = 151

 Score = 64.8 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 65/148 (43%), Gaps = 10/148 (6%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           ++     ++++E+   +  +R  +     E    GD ++ A+     E     + ++A+L
Sbjct: 9   LSPAARSQLEKEIENLRA-QRAALAPQPGEQERTGDAADQADVIDRAEAAARLDRQIADL 67

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
                 A  ++       ++  G TV  +    GD++ +Q+V     D  +  ++  SP+
Sbjct: 68  ------AAKMEHGGYGNSQLPDG-TVVSLRFADGDEETFQVVTVPGEDADA--ITSDSPL 118

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
             AL+G + GD I+   P G+    +++
Sbjct: 119 GLALVGAKAGDEITYRTPRGDAKATVVK 146


>gi|289208904|ref|YP_003460970.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix]
 gi|288944535|gb|ADC72234.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix]
          Length = 136

 Score = 64.8 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
            A+LE  + RA+V+D   + G  +   + V      SG++ +  +V  ++ D   G +SI
Sbjct: 31  KADLEAELDRADVVDSREIPGTVVTMNSKVRFRVTESGEEFSLTLVYPRDVDDSGGTLSI 90

Query: 123 SSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
            +P+  AL+G   GD I    P GG+    I  V +
Sbjct: 91  LAPVGSALLGLSEGDEIEWPRPGGGQMHVRIEAVEY 126


>gi|188575425|ref|YP_001912354.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188519877|gb|ACD57822.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 215

 Score = 64.8 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 48/135 (35%), Gaps = 6/135 (4%)

Query: 19  LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE------LENIITR 72
           L       R         +      +  + +  A+    L+     +      L + + R
Sbjct: 60  LAVLASRIRQETAMTSQHSSGLPPSTLVSSHDLARREALLDSPSFNKHPAATALSDELGR 119

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
           A V+    + GD +   + +   ++  G +     V   EADVQ G + + +P+  AL G
Sbjct: 120 ARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAPVGSALGG 179

Query: 133 KELGDIISVNAPGGE 147
             +G  I    P G 
Sbjct: 180 LSVGQRIDWRTPDGR 194


>gi|218533326|ref|YP_002424141.1| GreA/GreB family elongation factor [Methylobacterium
           chloromethanicum CM4]
 gi|218525629|gb|ACK86213.1| GreA/GreB family elongation factor [Methylobacterium
           chloromethanicum CM4]
          Length = 137

 Score = 64.8 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 33  AISEARAYGDLSENAEYQA-----AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
            +S A A   +   A+        A    +     ++ L + + R +++      GD   
Sbjct: 3   KVSLAAAKPPIKMTADDHERLSRLAASTMDRAPEVVSFLSDELDRVQIVRGGAAQGDFAR 62

Query: 88  FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
            G+ V   + ++G  ++  +V   EAD++ G VSI +PI  ALIG   G  I      GE
Sbjct: 63  MGSRVDFRDNSTGRMQSVTLVYPGEADIEQGKVSILTPIGAALIGLSKGQSIDWATRTGE 122

Query: 148 -KTYEILQVL 156
            +   +L V 
Sbjct: 123 TRRLTVLAVR 132


>gi|304310570|ref|YP_003810168.1| transcription elongation factor GreA/GreB [gamma proteobacterium
           HdN1]
 gi|301796303|emb|CBL44511.1| transcription elongation factor GreA/GreB [gamma proteobacterium
           HdN1]
          Length = 137

 Score = 64.8 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 9/131 (6%)

Query: 26  ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDR 85
           +RP I  +  +A       E  E   A   +    G   ELE  + RA V++   +    
Sbjct: 3   KRPEITISTLDA-------ERLEDLLASLPKATFVGH-KELEAELDRANVVEPHEVPPTV 54

Query: 86  IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP- 144
           +   + V    ++S D+    +V  ++ D     +SI SP+  AL+G   GD I    P 
Sbjct: 55  VTMNSKVKFNVESSSDEFELTLVYPKDMDASGKTISILSPVGSALLGLSQGDEIEWPKPG 114

Query: 145 GGEKTYEILQV 155
           GG    ++ +V
Sbjct: 115 GGLLKVKVKEV 125


>gi|70733293|ref|YP_263067.1| nucleoside diphosphate kinase regulator [Pseudomonas fluorescens
           Pf-5]
 gi|68347592|gb|AAY95198.1| regulator of nucleoside diphosphate kinase [Pseudomonas fluorescens
           Pf-5]
          Length = 137

 Score = 64.8 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E++SG   +  +V  Q+A+   G +SI +P+  AL+G ++G  I   AP
Sbjct: 54  VVTMNSRVHCREESSGKDYHLTLVYPQDANADEGKISILAPVGSALLGLQVGQYIDWPAP 113

Query: 145 GGEK-TYEILQVLW 157
           GG+     +L+V +
Sbjct: 114 GGKTLKLTLLEVEY 127


>gi|148558514|ref|YP_001257600.1| nucleoside diphosphate kinase regulator [Brucella ovis ATCC 25840]
 gi|148369799|gb|ABQ62671.1| putative transcriptional regulator Rnk [Brucella ovis ATCC 25840]
          Length = 146

 Score = 64.4 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 51  AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
            A       E    EL   +  A+V+    +  + +  G+TV     N G ++   +V  
Sbjct: 1   MASNASERFEEIAEELMAELDCAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYP 59

Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
            EAD+    +SI +PI  ALIG   G  IS  A  G++    +L+V
Sbjct: 60  GEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKV 105


>gi|218533329|ref|YP_002424144.1| GreA/GreB family elongation factor [Methylobacterium
           chloromethanicum CM4]
 gi|218525632|gb|ACK86216.1| GreA/GreB family elongation factor [Methylobacterium
           chloromethanicum CM4]
          Length = 140

 Score = 64.4 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 1/106 (0%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A    +        L + + RA+V+     +   +  G  V   +  +G  +   +V   
Sbjct: 30  ASAAMDRMPAVAGYLADELDRAQVVRSGRAAVGCVRMGCEVEFRDDTTGKVQAVTLVYPG 89

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
           EAD+  G +S+ +P+  ALIG   G  I      GE K   +L V 
Sbjct: 90  EADIGQGRISVLTPVGAALIGLSAGQSIRWVTRMGETKRLTVLDVR 135


>gi|88813317|ref|ZP_01128556.1| GreA/GreB family elongation factor [Nitrococcus mobilis Nb-231]
 gi|88789489|gb|EAR20617.1| GreA/GreB family elongation factor [Nitrococcus mobilis Nb-231]
          Length = 137

 Score = 64.4 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  + RAEV+    +    +   + V    +NSG++    +V  ++    +  +S+ +P
Sbjct: 35  LQAELDRAEVVPPEQVPPSVVTMNSAVRFSIENSGEEFCLTLVYPKDVGGNADRISVLAP 94

Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
           +  AL+G  +GD +    P GG     ++++++
Sbjct: 95  VGSALLGLSVGDELEWPRPGGGVLRVRVVEIVY 127


>gi|182412842|ref|YP_001817908.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
 gi|177840056|gb|ACB74308.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
          Length = 204

 Score = 64.0 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 73/166 (43%), Gaps = 16/166 (9%)

Query: 5   IPVTSKGFDK-IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           I V   G+++ + +E    +  +R  ++    EA + GDL EN  ++AAKE     + +M
Sbjct: 19  IYVRP-GYNRVLAEEFEALK-VKRAALVLDKIEAHSQGDLRENFGFKAAKEAIRAVDRKM 76

Query: 64  AELENIITRAEVIDISTMSG-----DRIAFGATVSLVEKNSGDKKN------YQIVGDQE 112
             L+  + R    ++   +      D +  G   ++ +++   K+           G+  
Sbjct: 77  MALDRFVARNTFKEVDPAAWLTKSTDTLQLGHVTTIEKQDVTTKRTHSFTFLVTTYGETA 136

Query: 113 ADVQSGL--VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +D  SGL  +  +SP+A A++G   G    V  P GE    ++ + 
Sbjct: 137 SDPDSGLECLPHTSPLATAVLGLAAGAQTKVMLPAGESLLTLISIR 182


>gi|319784595|ref|YP_004144071.1| transcription elongation factor GreA/GreB domain-containing protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170483|gb|ADV14021.1| transcription elongation factor GreA/GreB domain-containing protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 157

 Score = 64.0 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 71/151 (47%), Gaps = 24/151 (15%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VT +G  +I++ L   +                  D+   AE +A +E   +    +
Sbjct: 27  RNLVTERGLAQIEENLADLR------------------DILAKAERKADRERIAVVSRDL 68

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                    AE+      S D + FG  V++ E + G K +++IVG+ EAD   G +S  
Sbjct: 69  RYWTARRESAELSVPEPGS-DVVRFGMGVTI-ESDDGKKVHWKIVGEDEADPTKGSISHV 126

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           SP+A AL GK++GD+ SVN     K +EI++
Sbjct: 127 SPMAVALFGKKIGDLASVN----GKEWEIVK 153


>gi|73542981|ref|YP_297501.1| transcription elongation factor GreA/GreB region [Ralstonia
           eutropha JMP134]
 gi|72120394|gb|AAZ62657.1| Prokaryotic transcription elongation factor GreA/GreB region
           [Ralstonia eutropha JMP134]
          Length = 139

 Score = 64.0 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ ++ RA ++    +  D +   + +    +     + + +V   EAD  +G +S+ SP
Sbjct: 37  LDALLARAAIVAPQDIPTDVVTMNSRLVCALQGDATPRLWTLVYPDEADFDAGRLSVLSP 96

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           + +AL+G   G+ +S   P G E+   + ++ +
Sbjct: 97  VGQALLGARAGETVSYRLPDGREQHVSVTEITF 129


>gi|218673855|ref|ZP_03523524.1| transcription elongation factor regulatory protein [Rhizobium etli
           GR56]
          Length = 160

 Score = 64.0 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT  G   +  EL+++Q  E       I +       + N                + 
Sbjct: 29  NLVTEAGLKAL--ELQFQQAREAYDAASIIEDVNERRRQTANPLRD------------LR 74

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L   +  A+++     S D +AFG+TV+   ++ G  + Y+IVG+ EA+ ++  +S  S
Sbjct: 75  YLAARLRTAQLM-PDPTSADVVAFGSTVTFR-RDDGRVQTYRIVGEDEAEPKAASISYLS 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+AR L+GK  GD + V    G    EI+ +
Sbjct: 133 PVARLLMGKAAGDAVEV----GGHELEIIAI 159


>gi|94499055|ref|ZP_01305593.1| putative regulator of nucleoside diphosphate kinase [Oceanobacter
           sp. RED65]
 gi|94428687|gb|EAT13659.1| putative regulator of nucleoside diphosphate kinase [Oceanobacter
           sp. RED65]
          Length = 135

 Score = 64.0 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE+ + RA +++ + +  + ++  + V     ++  +    +V  ++ D +   +SI +
Sbjct: 32  ELEDELDRANLVEPTEIPPNIVSMNSKVKFEVVSTNQEFELTLVYPKDLDQEGKTISILA 91

Query: 125 PIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
           P+  AL+G  +GD I  ++P GG     I  +++
Sbjct: 92  PVGSALLGLSIGDSIEWSSPGGGILEVIIKDIVY 125


>gi|114563174|ref|YP_750687.1| GreA/GreB family elongation factor [Shewanella frigidimarina NCIMB
           400]
 gi|114334467|gb|ABI71849.1| GreA/GreB family elongation factor [Shewanella frigidimarina NCIMB
           400]
          Length = 137

 Score = 64.0 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 9/132 (6%)

Query: 27  RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
           RP I  +  +A+    L E+   +            ++ELE  + RA ++D   +    +
Sbjct: 4   RPEITISSLDAQRLFTLIESLPTK--------KMVGISELEEELARAIIVDPKEIPTTIV 55

Query: 87  AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP-G 145
              +TV    + S ++    +V  ++ D++   +SI +P+  AL+G   GD I    P G
Sbjct: 56  TMNSTVKFTVEASREEFLMTLVYPKDLDLKGDKISILAPVGSALLGLAQGDQIEWPKPGG 115

Query: 146 GEKTYEILQVLW 157
           G     I ++ +
Sbjct: 116 GLIKITINEIFY 127


>gi|122879281|ref|YP_202287.6| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 143

 Score = 64.0 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA V+    + GD +   + +   ++  G +     V   EADVQ G + + +P
Sbjct: 41  LSDELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAP 100

Query: 126 IARALIGKELGDIISVNAPGGE 147
           +  AL G  +G  I    P G 
Sbjct: 101 VGSALGGLSVGQRIDWRTPDGR 122


>gi|84625107|ref|YP_452479.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|84369047|dbj|BAE70205.1| regulator of nucleoside diphosphate kinase [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 143

 Score = 64.0 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 37/82 (45%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA V+    + GD +   + +   ++  G +     V   EADVQ G + + +P
Sbjct: 41  LSDELGRARVLPPDQIRGDVVTMHSRIECEDQLHGGRHTLPPVHPHEADVQHGRICVLAP 100

Query: 126 IARALIGKELGDIISVNAPGGE 147
           +  AL G  +G  I    P G 
Sbjct: 101 VGSALGGLSVGQRIDWRTPDGR 122


>gi|295690226|ref|YP_003593919.1| GreA/Greb family elongation factor [Caulobacter segnis ATCC 21756]
 gi|295432129|gb|ADG11301.1| GreA/GreB family elongation factor [Caulobacter segnis ATCC 21756]
          Length = 160

 Score = 63.6 bits (153), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 61/151 (40%), Gaps = 19/151 (12%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT++G   I+ EL               +   A GD          +         + 
Sbjct: 28  NLVTAEGLAHIEAELA---SARAAYAAAQSAGGAADGD----------RTAMARATRDLR 74

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                   A++++          FG  V+  E+  G  + ++IVG+ EAD   G VS  +
Sbjct: 75  YWSARRATAQLMERDPAK-TVAQFGDRVTF-EREDGRVQTFRIVGEDEADPAKGSVSYIA 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           PIARAL+GK +G+     APGGE   EI  +
Sbjct: 133 PIARALLGKAVGETA--PAPGGEI--EITAI 159


>gi|62179216|ref|YP_215633.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|224582450|ref|YP_002636248.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62126849|gb|AAX64552.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224466977|gb|ACN44807.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|322713681|gb|EFZ05252.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 136

 Score = 63.6 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V        S  +S+ +P
Sbjct: 34  LNAELDRAQMCSPQEMPNDVVTMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDTIHWELPGGTSTHLEVLELEY 126


>gi|42521926|ref|NP_967306.1| regulator of nucleoside diphosphate kinase [Bdellovibrio
           bacteriovorus HD100]
 gi|39574456|emb|CAE77960.1| regulator of nucleoside diphosphate kinase [Bdellovibrio
           bacteriovorus HD100]
          Length = 138

 Score = 63.6 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  ++RA VI    +  + +   + V  +++ SG +    +V  Q+A ++ G +SI +P
Sbjct: 36  LEEELSRANVIAQKEIPKNVVTMNSRVQFLDEVSGQESEMTLVYPQDAKLEEGRLSILAP 95

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +G  I+   P G  K  ++  V +
Sbjct: 96  VGIALLGLSVGQEINWKLPNGQSKKLKVQAVTY 128


>gi|148550773|ref|YP_001260212.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
 gi|148503192|gb|ABQ71445.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
          Length = 137

 Score = 63.6 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/134 (26%), Positives = 56/134 (41%), Gaps = 9/134 (6%)

Query: 23  QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
           +   RP I    SEA    DL+ +A  +  +  Q L E            A +     + 
Sbjct: 5   KAARRPPIHMIDSEADILADLATSAATRLPQVSQLLLEELGR--------ATIHKADRIP 56

Query: 83  GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
           GD +   + V   +  SG +  YQ+V  ++AD+  G +SI +P+   LIG   G  I   
Sbjct: 57  GDIVTMHSVVQFTDAASGKEHRYQLVYPKDADIAEGRISILTPVGAGLIGLRAGQSILWP 116

Query: 143 APGG-EKTYEILQV 155
              G E+   I +V
Sbjct: 117 DRDGHERLLTIAKV 130


>gi|194291135|ref|YP_002007042.1| regulator of nucleoside diphosphate kinase [Cupriavidus taiwanensis
           LMG 19424]
 gi|193224970|emb|CAQ70981.1| regulator of nucleoside diphosphate kinase [Cupriavidus taiwanensis
           LMG 19424]
          Length = 139

 Score = 63.6 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 4/111 (3%)

Query: 48  EYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107
           E  A++      E     L++++ RA ++    +  D +     V          +N+ +
Sbjct: 22  ERIASRAGSAQLEDM---LDSLLARATIVAPEEIPTDVVTMNTRVVCTLPGEQAPRNWTL 78

Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           V    AD  +G +S+ SP+ +AL+G   G+ +S   P G E+  +I ++ +
Sbjct: 79  VYPDAADFDAGRLSVLSPVGQALLGARAGETVSYRLPDGREQQVQIAEIAF 129


>gi|283834084|ref|ZP_06353825.1| regulator of nucleoside diphosphate kinase [Citrobacter youngae
           ATCC 29220]
 gi|291070230|gb|EFE08339.1| regulator of nucleoside diphosphate kinase [Citrobacter youngae
           ATCC 29220]
          Length = 136

 Score = 63.6 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++    TM  D +   + V     + G+ +   +V        S  +S+ +P
Sbjct: 34  LNAELDRAQMCSPETMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPANMTDSSTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +GD I    PGG     E++++ +
Sbjct: 94  VGAALLGLRVGDTIHWELPGGTSTHLEVIELEY 126


>gi|118469742|ref|YP_890510.1| transcription elongation factor GreA [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171029|gb|ABK71925.1| transcription elongation factor GreA [Mycobacterium smegmatis str.
           MC2 155]
          Length = 157

 Score = 63.6 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 56/146 (38%), Gaps = 15/146 (10%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            +I ++ +  +++QQEL   +            E  A    S++ E Q A  +Q   + R
Sbjct: 5   QRIWMSPQAHERLQQELSTLR------------ELIATEAASDSDENQVA--VQRARQAR 50

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + ++ +++  AEV +     G            + +   +     V   E      + S+
Sbjct: 51  IQQIHDLLLHAEVGETPPNDGVAEPGMVLTVRWDGSDDTETFLLGVRGAE-YGDLEVYSV 109

Query: 123 SSPIARALIGKELGDIISVNAPGGEK 148
            SP+  A++G   G+      P G +
Sbjct: 110 QSPLGSAILGARPGEHREYETPTGAR 135


>gi|260430269|ref|ZP_05784243.1| GreA/GreB family elongation factor [Citreicella sp. SE45]
 gi|260418741|gb|EEX11997.1| GreA/GreB family elongation factor [Citreicella sp. SE45]
          Length = 147

 Score = 63.6 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   I RA ++  + +  + +A G  V+  ++++G +K    V  ++AD+  G +SI +P
Sbjct: 45  LLGEIGRARIVPAAKLPQNVVAIGRAVTYRDESNGQEKTVTPVFPEDADIARGRISILTP 104

Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQV 155
           I  ALIG   G  +  +   GE+    +L V
Sbjct: 105 IGVALIGLAEGASLHWDTRDGERRVLTVLHV 135


>gi|163852771|ref|YP_001640814.1| transcription elongation factor GreA/GreB domain-containing protein
           [Methylobacterium extorquens PA1]
 gi|163664376|gb|ABY31743.1| transcription elongation factor GreA/GreB domain protein
           [Methylobacterium extorquens PA1]
          Length = 123

 Score = 63.3 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A    +      + L + + R +++       D    G+ V   + ++G  ++  +V   
Sbjct: 13  AASAMDRAPEVASFLSDELDRVQIVRGGAAQRDFARMGSRVDFRDNSTGRTQSVTLVYPG 72

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
           EAD++ G +SI +PI  ALIG   G  I      GE +   +L+V 
Sbjct: 73  EADIEQGRISILTPIGAALIGLSEGQSIDWATRTGETRRLTVLEVR 118


>gi|316932887|ref|YP_004107869.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           DX-1]
 gi|315600601|gb|ADU43136.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           DX-1]
          Length = 174

 Score = 63.3 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 24/153 (15%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPR-IIKAISEAR-AYGDLSENAEYQAAKELQNLNEGR 62
             VT+ G   ++++L   +       +I+ ++E R A      +A Y AA+         
Sbjct: 43  NLVTAAGLAALEEQLAEAKAALEAAGLIEDVNERRRAEAIPLRDARYYAARVRTAQVM-- 100

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
                              S D IAFG+TV+   +  G  + Y+IVG+ EAD + G +S 
Sbjct: 101 ---------------PDPASTDEIAFGSTVTFR-RADGRVQTYRIVGEDEADPKQGTISF 144

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SP+AR+L+GK +GD++      G +  E++ +
Sbjct: 145 VSPVARSLMGKSVGDVV----GKGAQELEVVGI 173


>gi|218549803|ref|YP_002383594.1| nucleoside diphosphate kinase regulator [Escherichia fergusonii
           ATCC 35469]
 gi|218357344|emb|CAQ89981.1| regulator of nucleoside diphosphate kinase [Escherichia fergusonii
           ATCC 35469]
 gi|324114743|gb|EGC08711.1| hypothetical protein ERIG_00737 [Escherichia fergusonii B253]
 gi|325498198|gb|EGC96057.1| nucleoside diphosphate kinase regulator [Escherichia fergusonii
           ECD227]
          Length = 136

 Score = 63.3 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++    TM  D +   + V     + G+ +   +V   +    +  +S+ +P
Sbjct: 34  LNAELDRAQMCSPETMPNDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDTIHWELPGGTSTHLEVLELEY 126


>gi|269137850|ref|YP_003294550.1| nucleoside diphosphate kinase regulator [Edwardsiella tarda EIB202]
 gi|267983510|gb|ACY83339.1| nucleoside diphosphate kinase regulator [Edwardsiella tarda EIB202]
 gi|304557903|gb|ADM40567.1| Regulator of nucleoside diphosphate kinase [Edwardsiella tarda
           FL6-60]
          Length = 136

 Score = 63.3 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 27  RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
           RP II    +A     L E   + A    Q LNE            A+++  + M  D +
Sbjct: 3   RPAIIINELDAERLDRLLERPAFAAQPVAQALNEELDR--------AQLLAPAAMPADVV 54

Query: 87  AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
              + V   + N+ ++    +V     D     +S+ +PI  AL+G  +GD I    P G
Sbjct: 55  TMNSRVRFRDLNTNEEHVRTLVYPHLQDSAEDGLSVMAPIGAALLGLRVGDAIRWTLPNG 114

Query: 147 EKT-YEILQVLW 157
            +T  E+L +L+
Sbjct: 115 NQTHIEVLALLY 126


>gi|229593308|ref|YP_002875427.1| nucleoside diphosphate kinase regulator [Pseudomonas fluorescens
           SBW25]
 gi|229365174|emb|CAY53437.1| regulator of nucleoside diphosphate kinase [Pseudomonas fluorescens
           SBW25]
          Length = 136

 Score = 63.3 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 84  DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
             +   ++V   E+ SG   +  +V  ++A+   G +SI +P+  AL+G ++G  I   A
Sbjct: 52  TVVTMNSSVHCREQGSGKDYHLTLVYPKDANADEGKISILAPVGSALLGLKVGQHIDWPA 111

Query: 144 PGGEK-TYEILQVL 156
           PGG+    E+L V 
Sbjct: 112 PGGKTLKLELLSVE 125


>gi|218533328|ref|YP_002424143.1| GreA/GreB family elongation factor [Methylobacterium
           chloromethanicum CM4]
 gi|218525631|gb|ACK86215.1| GreA/GreB family elongation factor [Methylobacterium
           chloromethanicum CM4]
          Length = 147

 Score = 63.3 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 1/119 (0%)

Query: 40  YGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS 99
             D     E  A   +       +A L   + RA V+    +    +   A V   +  +
Sbjct: 17  MSDFRFLREIAAGTGVSQARGSVVAWLAEELDRATVVPPGAVPPRVVTMHARVEYRDDVT 76

Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
              +   +    E D  +  +S+ +P+  AL+G   G  I    P GG +   +L+V +
Sbjct: 77  DQVRCVTLTYPGEEDAYASGISVLTPVGAALVGLSEGHSIRWRTPSGGLRGLTVLRVRF 135


>gi|237730594|ref|ZP_04561075.1| nucleoside diphosphate kinase regulator [Citrobacter sp. 30_2]
 gi|226906133|gb|EEH92051.1| nucleoside diphosphate kinase regulator [Citrobacter sp. 30_2]
          Length = 136

 Score = 63.3 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++    TM  D +   + V     + G+ +   +V        +  +S+ +P
Sbjct: 34  LNAELDRAQMCSPETMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPATMTDSNTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +GD I    PGG     E++++ +
Sbjct: 94  VGAALLGLRVGDTIHWELPGGTSTHLEVIELEY 126


>gi|157146775|ref|YP_001454094.1| nucleoside diphosphate kinase regulator [Citrobacter koseri ATCC
           BAA-895]
 gi|157083980|gb|ABV13658.1| hypothetical protein CKO_02549 [Citrobacter koseri ATCC BAA-895]
          Length = 136

 Score = 63.3 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V        +  +S+ +P
Sbjct: 34  LNAELDRAQMCSPEAMPHDVVTMNSRVKFRNLSDGEIRVRTLVYPANMTDSNTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +GD I  + PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDTIHWDLPGGASTHLEVLELEY 126


>gi|16759576|ref|NP_455193.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16763993|ref|NP_459608.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29142651|ref|NP_805993.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56414248|ref|YP_151323.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|161615176|ref|YP_001589141.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167550854|ref|ZP_02344610.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167990616|ref|ZP_02571716.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231621|ref|ZP_02656679.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168236603|ref|ZP_02661661.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168240457|ref|ZP_02665389.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168260874|ref|ZP_02682847.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465785|ref|ZP_02699667.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|194450939|ref|YP_002044647.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194471151|ref|ZP_03077135.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194735601|ref|YP_002113733.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250140|ref|YP_002145589.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263195|ref|ZP_03163269.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197363171|ref|YP_002142808.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198245388|ref|YP_002214607.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390133|ref|ZP_03216744.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204930449|ref|ZP_03221379.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205351905|ref|YP_002225706.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207856082|ref|YP_002242733.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213023434|ref|ZP_03337881.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
 gi|213051866|ref|ZP_03344744.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213417566|ref|ZP_03350708.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425121|ref|ZP_03357871.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213613069|ref|ZP_03370895.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213647691|ref|ZP_03377744.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213850322|ref|ZP_03381220.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|238911567|ref|ZP_04655404.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289829888|ref|ZP_06547376.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25511993|pir||AC0578 regulator of nucleoside diphosphate kinase STY0664 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16419127|gb|AAL19567.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|16501868|emb|CAD05093.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138282|gb|AAO69853.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56128505|gb|AAV78011.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|161364540|gb|ABX68308.1| hypothetical protein SPAB_02944 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194409243|gb|ACF69462.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457515|gb|EDX46354.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711103|gb|ACF90324.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195631988|gb|EDX50508.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197094648|emb|CAR60171.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|197213843|gb|ACH51240.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241450|gb|EDY24070.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197290337|gb|EDY29693.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197939904|gb|ACH77237.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602578|gb|EDZ01124.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204320383|gb|EDZ05586.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205271686|emb|CAR36516.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205324214|gb|EDZ12053.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205330837|gb|EDZ17601.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334065|gb|EDZ20829.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205339721|gb|EDZ26485.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205349901|gb|EDZ36532.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206707885|emb|CAR32173.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261245889|emb|CBG23690.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267992344|gb|ACY87229.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157217|emb|CBW16704.1| regulator of nucleoside diphosphate kinase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911647|dbj|BAJ35621.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320084884|emb|CBY94674.1| Transcription elongation factor greA Transcript cleavage factor
           greA [Salmonella enterica subsp. enterica serovar
           Weltevreden str. 2007-60-3289-1]
 gi|321226194|gb|EFX51245.1| Regulator of nucleoside diphosphate kinase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322613251|gb|EFY10194.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322621321|gb|EFY18178.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623740|gb|EFY20578.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629012|gb|EFY25791.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631734|gb|EFY28488.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637530|gb|EFY34232.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641870|gb|EFY38500.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646715|gb|EFY43221.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322651415|gb|EFY47795.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653134|gb|EFY49468.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658854|gb|EFY55109.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664876|gb|EFY61069.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668878|gb|EFY65030.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670616|gb|EFY66749.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675357|gb|EFY71433.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682172|gb|EFY78197.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322684997|gb|EFY80994.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323128933|gb|ADX16363.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323193943|gb|EFZ79145.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323197965|gb|EFZ83087.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201988|gb|EFZ87048.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323207121|gb|EFZ92074.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211668|gb|EFZ96502.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214352|gb|EFZ99103.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221503|gb|EGA05917.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225547|gb|EGA09777.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231105|gb|EGA15221.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234063|gb|EGA18152.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238242|gb|EGA22300.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242524|gb|EGA26548.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248499|gb|EGA32433.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251285|gb|EGA35157.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323259213|gb|EGA42856.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261516|gb|EGA45095.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264803|gb|EGA48304.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272360|gb|EGA55767.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326622360|gb|EGE28705.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326626944|gb|EGE33287.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332987561|gb|AEF06544.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 136

 Score = 63.3 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V        S  +S+ +P
Sbjct: 34  LNAELDRAQMCSPQEMPNDVVTMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDTIHWELPGGASTHLEVLELEY 126


>gi|168818764|ref|ZP_02830764.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205344225|gb|EDZ30989.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 136

 Score = 63.3 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V        S  +S+ +P
Sbjct: 34  LNAELDRAQMCSPQEMPNDVVTMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDTIHWELPGGASTHLEVLELEY 126


>gi|332308302|ref|YP_004436153.1| GreA/GreB family elongation factor [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175631|gb|AEE24885.1| GreA/GreB family elongation factor [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 126

 Score = 63.3 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 49/113 (43%)

Query: 44  SENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK 103
           ++ AE +   E   L    +  +EN + RA ++    +  + +A G+ V+    +S    
Sbjct: 10  ADLAELEYQLERAKLPADTVRAIENELDRASIVACKDLPENVVAIGSKVTFKILDSQKIF 69

Query: 104 NYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
              +    +       +S+ +PI  ALIG   G  I+     GE++ EI+ V 
Sbjct: 70  TKTLCLPHDTIKYEDSISVFAPIGSALIGLSTGQCITWQTQRGEQSVEIINVE 122


>gi|331676268|ref|ZP_08376980.1| regulator of nucleoside diphosphate kinase [Escherichia coli H591]
 gi|331076326|gb|EGI47608.1| regulator of nucleoside diphosphate kinase [Escherichia coli H591]
          Length = 136

 Score = 63.3 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V   +    +  +S+ +P
Sbjct: 34  LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126


>gi|297518602|ref|ZP_06936988.1| nucleoside diphosphate kinase regulator [Escherichia coli OP50]
          Length = 136

 Score = 63.3 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V   +    +  +S+ +P
Sbjct: 34  LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVHPAKMTDSNTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126


>gi|254562534|ref|YP_003069629.1| elongation factor, GreA/GreB family [Methylobacterium extorquens
           DM4]
 gi|254269812|emb|CAX25787.1| Putative elongation factor, GreA/GreB family [Methylobacterium
           extorquens DM4]
          Length = 107

 Score = 63.3 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           A L + + R +++       D    G+ V   + ++G  ++  +V   EAD++ G VSI 
Sbjct: 9   AFLSDELDRVQIVRGGAAQRDFARMGSRVDFRDNSTGRTQSVTLVYPGEADIEQGKVSIL 68

Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
           +PI  ALIG   G  I+     GE +   +L+V 
Sbjct: 69  TPIGAALIGLSEGQSINWATRTGETRRLTVLEVR 102


>gi|254695666|ref|ZP_05157494.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|261216066|ref|ZP_05930347.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 3
           str. Tulya]
 gi|260917673|gb|EEX84534.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 3
           str. Tulya]
          Length = 169

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 2/105 (1%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A       E    EL   + RA+V+    +  + +  G+TV     N G ++   +V   
Sbjct: 25  ASNASERFEEIAEELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPG 83

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
           EAD+    +SI +PI  ALIG   G  IS  A  G++    +L+V
Sbjct: 84  EADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKV 128


>gi|320352605|ref|YP_004193944.1| GreA/GreB family elongation factor [Desulfobulbus propionicus DSM
           2032]
 gi|320121107|gb|ADW16653.1| GreA/GreB family elongation factor [Desulfobulbus propionicus DSM
           2032]
          Length = 137

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 45/99 (45%)

Query: 57  NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
                 + +L   +++  V+    M  + +   + V L + + G+     +V  +E D Q
Sbjct: 28  GQERKYIRKLHYDMSQGHVVSAGEMPSNVVTTHSWVVLCDLSDGEVFGLTLVFPEEVDSQ 87

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
              VSI S I  ALIG++ GD I+ + P G +   I  +
Sbjct: 88  GNRVSILSSIGAALIGRQKGDTIAYSTPSGIRRCLITTI 126


>gi|170767795|ref|ZP_02902248.1| regulator of nucleoside diphosphate kinase [Escherichia albertii
           TW07627]
 gi|170123283|gb|EDS92214.1| regulator of nucleoside diphosphate kinase [Escherichia albertii
           TW07627]
          Length = 136

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  + +   + V     + G+ +   +V   +    +  +S+  P
Sbjct: 34  LNAELDRAQMCSPEEMPHNVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMDP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDTIHWELPGGTATHLEVLELEY 126


>gi|182414436|ref|YP_001819502.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
 gi|177841650|gb|ACB75902.1| GreA/GreB family elongation factor [Opitutus terrae PB90-1]
          Length = 143

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 50/88 (56%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +L + ++R  V+D + +    I  G+TV + +  SG+ + Y +V  ++A+V +  +S+ +
Sbjct: 31  QLRSELSRGVVVDATALPPTAIRLGSTVEIEDLESGEIETYTLVLPEQANVDARKLSVLA 90

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEI 152
           PI  A+IG   G  ++ + PGG +   I
Sbjct: 91  PIGTAVIGCLQGAEVAWSTPGGTRRLRI 118


>gi|153011001|ref|YP_001372215.1| nucleoside diphosphate kinase regulator [Ochrobactrum anthropi ATCC
           49188]
 gi|151562889|gb|ABS16386.1| GreA/GreB family elongation factor [Ochrobactrum anthropi ATCC
           49188]
          Length = 142

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 2/105 (1%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A  +    E    EL   + RA+V+    +  + I  G+TV     N G ++   +V   
Sbjct: 25  ATNVSERLEEIAEELMVELDRAKVVPAKRLPQNVIHMGSTVEFR-SNDGQERRVTLVYPG 83

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
           EAD+  G +SI +PI  ALIG   G  IS  A  G++    +L V
Sbjct: 84  EADIAQGKISILTPIGTALIGLAPGQSISWTARDGKQHELNVLSV 128


>gi|320177450|gb|EFW52449.1| Regulator of nucleoside diphosphate kinase [Shigella dysenteriae
           CDC 74-1112]
          Length = 136

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V   +    +  +S+ +P
Sbjct: 34  LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126


>gi|161504212|ref|YP_001571324.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865559|gb|ABX22182.1| hypothetical protein SARI_02319 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 136

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V        S  +S+ +P
Sbjct: 34  LNAELDRAQMCSPQEMPSDVVTMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDTIHWELPGGASTHLEVLELEY 126


>gi|254720401|ref|ZP_05182212.1| nucleoside diphosphate kinase regulator [Brucella sp. 83/13]
 gi|265985419|ref|ZP_06098154.1| nucleoside diphosphate kinase regulator [Brucella sp. 83/13]
 gi|306839022|ref|ZP_07471843.1| nucleoside diphosphate kinase regulator [Brucella sp. NF 2653]
 gi|264664011|gb|EEZ34272.1| nucleoside diphosphate kinase regulator [Brucella sp. 83/13]
 gi|306405928|gb|EFM62186.1| nucleoside diphosphate kinase regulator [Brucella sp. NF 2653]
          Length = 170

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 2/105 (1%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A       E    EL   + RA+V+    +  + +  G+TV     N G ++   +V   
Sbjct: 25  ASNASERFEEIAEELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPG 83

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
           EAD+    +SI +PI  ALIG   G  IS  A  G++    +L+V
Sbjct: 84  EADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKV 128


>gi|323967558|gb|EGB62974.1| hypothetical protein ERJG_01136 [Escherichia coli M863]
 gi|327254294|gb|EGE65916.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           STEC_7v]
          Length = 136

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V   +    +  +S+ +P
Sbjct: 34  LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126


>gi|302389044|ref|YP_003824865.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM
           16646]
 gi|302199672|gb|ADL07242.1| GreA/GreB family elongation factor [Thermosediminibacter oceani DSM
           16646]
          Length = 150

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 74/160 (46%), Gaps = 15/160 (9%)

Query: 2   VDKIP-VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           + +   ++   F+ + + L   +  +   I +  S +            + A+EL++L +
Sbjct: 1   MQRTYTLSKTAFEALIKHLADLEAGKSRLIDEHFSNSP-----------REARELEHLLD 49

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE---ADVQS 117
             +  ++  I+  +  D +  S   +   + V + +  + +  N+++V       +D + 
Sbjct: 50  NYIKFMDEFISSVQQEDTADESFPYVVINSRVQVQDIENDETYNFRVVLPSGNIASDPEI 109

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
             VS+ SP+ ++L+ K+ G+ + VNAPGG   YEI  + +
Sbjct: 110 YSVSVLSPVGKSLLLKKPGEKVQVNAPGGMFLYEIKAIYF 149


>gi|226312653|ref|YP_002772547.1| hypothetical protein BBR47_30660 [Brevibacillus brevis NBRC 100599]
 gi|226095601|dbj|BAH44043.1| hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 164

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/109 (16%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 51  AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA--FGATVSLVEKNSGDKKNYQIV 108
             KE Q ++E      + + +     D +     +     G++V ++ +    ++++ +V
Sbjct: 47  YGKEKQAIDEIVDRYKQTLESLLAKEDSALFQSLKAITLLGSSVKVLFEEDQFEESFTVV 106

Query: 109 GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
              + D  +  +S  SPI R L+     D + + +P G +  ++ ++ +
Sbjct: 107 YPTDIDPDNNRISFLSPIGRQLLLAAPHDSVVLESPVGRQQVQVREISF 155


>gi|23500358|ref|NP_699798.1| nucleoside diphosphate kinase regulator [Brucella suis 1330]
 gi|62317530|ref|YP_223383.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 1
           str. 9-941]
 gi|161620676|ref|YP_001594562.1| nucleoside diphosphate kinase regulator [Brucella canis ATCC 23365]
 gi|225629104|ref|ZP_03787137.1| nucleoside diphosphate kinase regulator [Brucella ceti str. Cudo]
 gi|254691027|ref|ZP_05154281.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 6
           str. 870]
 gi|254698811|ref|ZP_05160639.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|254699850|ref|ZP_05161678.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 5 str.
           513]
 gi|254702988|ref|ZP_05164816.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 3 str.
           686]
 gi|254705890|ref|ZP_05167718.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
           M163/99/10]
 gi|254711118|ref|ZP_05172929.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
           B2/94]
 gi|254712423|ref|ZP_05174234.1| nucleoside diphosphate kinase regulator [Brucella ceti M644/93/1]
 gi|254715495|ref|ZP_05177306.1| nucleoside diphosphate kinase regulator [Brucella ceti M13/05/1]
 gi|254732258|ref|ZP_05190836.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 4
           str. 292]
 gi|256015391|ref|YP_003105400.1| nucleoside diphosphate kinase regulator [Brucella microti CCM 4915]
 gi|256029499|ref|ZP_05443113.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
           M292/94/1]
 gi|256157694|ref|ZP_05455612.1| nucleoside diphosphate kinase regulator [Brucella ceti M490/95/1]
 gi|256253334|ref|ZP_05458870.1| nucleoside diphosphate kinase regulator [Brucella ceti B1/94]
 gi|256256212|ref|ZP_05461748.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 9
           str. C68]
 gi|260167410|ref|ZP_05754221.1| nucleoside diphosphate kinase regulator [Brucella sp. F5/99]
 gi|260568099|ref|ZP_05838568.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
           suis bv. 4 str. 40]
 gi|260756623|ref|ZP_05868971.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 6
           str. 870]
 gi|260760053|ref|ZP_05872401.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 4
           str. 292]
 gi|260763292|ref|ZP_05875624.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260882440|ref|ZP_05894054.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 9
           str. C68]
 gi|261217230|ref|ZP_05931511.1| nucleoside diphosphate kinase regulator [Brucella ceti M13/05/1]
 gi|261220450|ref|ZP_05934731.1| nucleoside diphosphate kinase regulator [Brucella ceti B1/94]
 gi|261313320|ref|ZP_05952517.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261318709|ref|ZP_05957906.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
           B2/94]
 gi|261320101|ref|ZP_05959298.1| nucleoside diphosphate kinase regulator [Brucella ceti M644/93/1]
 gi|261750323|ref|ZP_05994032.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 5 str.
           513]
 gi|261753597|ref|ZP_05997306.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 3 str.
           686]
 gi|261756820|ref|ZP_06000529.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
           F5/99]
 gi|265986507|ref|ZP_06099064.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
           M292/94/1]
 gi|265996199|ref|ZP_06108756.1| nucleoside diphosphate kinase regulator [Brucella ceti M490/95/1]
 gi|294853589|ref|ZP_06794261.1| nucleoside diphosphate kinase regulator [Brucella sp. NVSL 07-0026]
 gi|297249569|ref|ZP_06933270.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 5
           str. B3196]
 gi|23463975|gb|AAN33803.1| transcriptional regulator Rnk, putative [Brucella suis 1330]
 gi|62197723|gb|AAX76022.1| hypothetical Rnk transcriptional regulator [Brucella abortus bv. 1
           str. 9-941]
 gi|161337487|gb|ABX63791.1| GreA/GreB family elongation factor [Brucella canis ATCC 23365]
 gi|225615600|gb|EEH12649.1| nucleoside diphosphate kinase regulator [Brucella ceti str. Cudo]
 gi|255998051|gb|ACU49738.1| nucleoside diphosphate kinase regulator [Brucella microti CCM 4915]
 gi|260154764|gb|EEW89845.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
           suis bv. 4 str. 40]
 gi|260670371|gb|EEX57311.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 4
           str. 292]
 gi|260673713|gb|EEX60534.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 2
           str. 86/8/59]
 gi|260676731|gb|EEX63552.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 6
           str. 870]
 gi|260871968|gb|EEX79037.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 9
           str. C68]
 gi|260919034|gb|EEX85687.1| nucleoside diphosphate kinase regulator [Brucella ceti B1/94]
 gi|260922319|gb|EEX88887.1| nucleoside diphosphate kinase regulator [Brucella ceti M13/05/1]
 gi|261292791|gb|EEX96287.1| nucleoside diphosphate kinase regulator [Brucella ceti M644/93/1]
 gi|261297932|gb|EEY01429.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
           B2/94]
 gi|261302346|gb|EEY05843.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
           M163/99/10]
 gi|261736804|gb|EEY24800.1| prokaryotic transcription elongation factor GreA/GreB [Brucella sp.
           F5/99]
 gi|261740076|gb|EEY28002.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 5 str.
           513]
 gi|261743350|gb|EEY31276.1| nucleoside diphosphate kinase regulator [Brucella suis bv. 3 str.
           686]
 gi|262550496|gb|EEZ06657.1| nucleoside diphosphate kinase regulator [Brucella ceti M490/95/1]
 gi|264658704|gb|EEZ28965.1| nucleoside diphosphate kinase regulator [Brucella pinnipedialis
           M292/94/1]
 gi|294819244|gb|EFG36244.1| nucleoside diphosphate kinase regulator [Brucella sp. NVSL 07-0026]
 gi|297173438|gb|EFH32802.1| nucleoside diphosphate kinase regulator [Brucella abortus bv. 5
           str. B3196]
          Length = 169

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 2/105 (1%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A       E    EL   + RA+V+    +  + +  G+TV     N G ++   +V   
Sbjct: 25  ASNASERFEEIAEELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPG 83

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
           EAD+    +SI +PI  ALIG   G  IS  A  G++    +L+V
Sbjct: 84  EADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKV 128


>gi|149926906|ref|ZP_01915165.1| nucleoside diphosphate kinase regulator [Limnobacter sp. MED105]
 gi|149824458|gb|EDM83676.1| nucleoside diphosphate kinase regulator [Limnobacter sp. MED105]
          Length = 122

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 43/90 (47%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           EL   +  AE I    +  D +   +  ++VE  SG      +    +A+   G +S+ S
Sbjct: 19  ELNAALDNAEFIKPQDIPADVVTMNSLFTIVETESGSTNKLMLCYPSDAEPAKGYISVLS 78

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQ 154
           P+  +L+G++ G +     P GE+ + +++
Sbjct: 79  PVGASLLGRKAGTVAQWATPNGEQHFAVVK 108


>gi|194444344|ref|YP_002039856.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403007|gb|ACF63229.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 136

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V        S  +S+ +P
Sbjct: 34  LNAELDRAQMCSPQEMPNDVVTMNSRVKFRNLSDGETRVRTLVYPVNMTDSSTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDTIHWELPGGASTHLEVLELEY 126


>gi|157157899|ref|YP_001461775.1| nucleoside diphosphate kinase regulator [Escherichia coli E24377A]
 gi|157079929|gb|ABV19637.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           E24377A]
          Length = 136

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V   +    +  +S+ +P
Sbjct: 34  LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126


>gi|213584821|ref|ZP_03366647.1| nucleoside diphosphate kinase regulator [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 131

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V        S  +S+ +P
Sbjct: 34  LNAELDRAQMCSPQEMPNDVVTMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDTIHWELPGGASTHLEVLELEY 126


>gi|146280909|ref|YP_001171062.1| nucleoside diphosphate kinase regulator [Pseudomonas stutzeri
           A1501]
 gi|145569114|gb|ABP78220.1| regulator of nucleoside diphosphate kinase [Pseudomonas stutzeri
           A1501]
 gi|327479178|gb|AEA82488.1| nucleoside diphosphate kinase regulator [Pseudomonas stutzeri DSM
           4166]
          Length = 134

 Score = 62.9 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  ++RA+V++ S M    +   + V   ++ SG   +  +V   +A  + G VS+ +P
Sbjct: 34  LEQELSRAQVVERSEMPAGVVTMNSRVHCRDEGSGKDYHLTLVYPHDA-GKEGTVSVLAP 92

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +G  I   APGG+     +L + +
Sbjct: 93  VGTALLGMSVGQHIDWPAPGGKMIKLTLLAIEY 125


>gi|309700850|emb|CBJ00147.1| regulator of nucleoside diphosphate kinase [Escherichia coli ETEC
           H10407]
          Length = 136

 Score = 62.9 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V   +    +  +S+ +P
Sbjct: 34  LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126


>gi|15800325|ref|NP_286337.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
           EDL933]
 gi|15829903|ref|NP_308676.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
           str. Sakai]
 gi|16128593|ref|NP_415143.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|24111957|ref|NP_706467.1| nucleoside diphosphate kinase regulator [Shigella flexneri 2a str.
           301]
 gi|26246590|ref|NP_752629.1| nucleoside diphosphate kinase regulator [Escherichia coli CFT073]
 gi|30062068|ref|NP_836239.1| nucleoside diphosphate kinase regulator [Shigella flexneri 2a str.
           2457T]
 gi|74311145|ref|YP_309564.1| nucleoside diphosphate kinase regulator [Shigella sonnei Ss046]
 gi|82543058|ref|YP_407005.1| nucleoside diphosphate kinase regulator [Shigella boydii Sb227]
 gi|89107477|ref|AP_001257.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
           K-12 substr. W3110]
 gi|91209657|ref|YP_539643.1| nucleoside diphosphate kinase regulator [Escherichia coli UTI89]
 gi|110640840|ref|YP_668568.1| nucleoside diphosphate kinase regulator [Escherichia coli 536]
 gi|110804605|ref|YP_688125.1| nucleoside diphosphate kinase regulator [Shigella flexneri 5 str.
           8401]
 gi|117622830|ref|YP_851743.1| nucleoside diphosphate kinase regulator [Escherichia coli APEC O1]
 gi|157160106|ref|YP_001457424.1| nucleoside diphosphate kinase regulator [Escherichia coli HS]
 gi|168747719|ref|ZP_02772741.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168754712|ref|ZP_02779719.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168760240|ref|ZP_02785247.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4501]
 gi|168770214|ref|ZP_02795221.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168774674|ref|ZP_02799681.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4196]
 gi|168779101|ref|ZP_02804108.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4076]
 gi|168786458|ref|ZP_02811465.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC869]
 gi|168798171|ref|ZP_02823178.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC508]
 gi|170021031|ref|YP_001725985.1| nucleoside diphosphate kinase regulator [Escherichia coli ATCC
           8739]
 gi|170080191|ref|YP_001729511.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170080292|ref|YP_001729612.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170681529|ref|YP_001742727.1| nucleoside diphosphate kinase regulator [Escherichia coli SMS-3-5]
 gi|187731796|ref|YP_001879282.1| nucleoside diphosphate kinase regulator [Shigella boydii CDC
           3083-94]
 gi|188493179|ref|ZP_03000449.1| regulator of nucleoside diphosphate kinase [Escherichia coli 53638]
 gi|191167359|ref|ZP_03029175.1| regulator of nucleoside diphosphate kinase [Escherichia coli B7A]
 gi|191172347|ref|ZP_03033889.1| regulator of nucleoside diphosphate kinase [Escherichia coli F11]
 gi|193069033|ref|ZP_03049991.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           E110019]
 gi|194427996|ref|ZP_03060541.1| regulator of nucleoside diphosphate kinase [Escherichia coli B171]
 gi|194437440|ref|ZP_03069537.1| regulator of nucleoside diphosphate kinase [Escherichia coli 101-1]
 gi|195936160|ref|ZP_03081542.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
           str. EC4024]
 gi|208809474|ref|ZP_03251811.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208816344|ref|ZP_03257523.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208822949|ref|ZP_03263267.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209397427|ref|YP_002269245.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209917869|ref|YP_002291953.1| nucleoside diphosphate kinase regulator [Escherichia coli SE11]
 gi|215485652|ref|YP_002328083.1| nucleoside diphosphate kinase regulator [Escherichia coli O127:H6
           str. E2348/69]
 gi|217325093|ref|ZP_03441177.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. TW14588]
 gi|218553153|ref|YP_002386066.1| nucleoside diphosphate kinase regulator [Escherichia coli IAI1]
 gi|218557550|ref|YP_002390463.1| nucleoside diphosphate kinase regulator [Escherichia coli S88]
 gi|218688434|ref|YP_002396646.1| nucleoside diphosphate kinase regulator [Escherichia coli ED1a]
 gi|218694051|ref|YP_002401718.1| nucleoside diphosphate kinase regulator [Escherichia coli 55989]
 gi|218698983|ref|YP_002406612.1| nucleoside diphosphate kinase regulator [Escherichia coli IAI39]
 gi|218703944|ref|YP_002411463.1| nucleoside diphosphate kinase regulator [Escherichia coli UMN026]
 gi|227884410|ref|ZP_04002215.1| nucleoside diphosphate kinase regulator [Escherichia coli 83972]
 gi|237707417|ref|ZP_04537898.1| nucleoside diphosphate kinase regulator [Escherichia sp. 3_2_53FAA]
 gi|238899889|ref|YP_002925685.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           BW2952]
 gi|253774405|ref|YP_003037236.1| nucleoside diphosphate kinase regulator [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160691|ref|YP_003043799.1| nucleoside diphosphate kinase regulator [Escherichia coli B str.
           REL606]
 gi|254791777|ref|YP_003076614.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
           str. TW14359]
 gi|256020563|ref|ZP_05434428.1| nucleoside diphosphate kinase regulator [Shigella sp. D9]
 gi|256023775|ref|ZP_05437640.1| nucleoside diphosphate kinase regulator [Escherichia sp. 4_1_40B]
 gi|260853863|ref|YP_003227754.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
           O26:H11 str. 11368]
 gi|260866759|ref|YP_003233161.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
           O111:H- str. 11128]
 gi|261224078|ref|ZP_05938359.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257772|ref|ZP_05950305.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291281563|ref|YP_003498381.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O55:H7
           str. CB9615]
 gi|293403873|ref|ZP_06647867.1| nucleoside diphosphate kinase regulator [Escherichia coli FVEC1412]
 gi|293408736|ref|ZP_06652575.1| kinase regulator [Escherichia coli B354]
 gi|293413907|ref|ZP_06656556.1| kinase regulator protein [Escherichia coli B185]
 gi|293418722|ref|ZP_06661157.1| hypothetical protein ECCG_03607 [Escherichia coli B088]
 gi|298379649|ref|ZP_06989254.1| nucleoside diphosphate kinase regulator protein [Escherichia coli
           FVEC1302]
 gi|300817873|ref|ZP_07098087.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           107-1]
 gi|300823077|ref|ZP_07103211.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           119-7]
 gi|300901112|ref|ZP_07119222.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           198-1]
 gi|300907782|ref|ZP_07125400.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           84-1]
 gi|300920583|ref|ZP_07137004.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           115-1]
 gi|300927295|ref|ZP_07143022.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           182-1]
 gi|300931538|ref|ZP_07146854.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           187-1]
 gi|300939638|ref|ZP_07154290.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           21-1]
 gi|300951104|ref|ZP_07164971.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           116-1]
 gi|300959172|ref|ZP_07171254.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           175-1]
 gi|300990100|ref|ZP_07179112.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           45-1]
 gi|300996806|ref|ZP_07181547.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           200-1]
 gi|301025288|ref|ZP_07188852.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           69-1]
 gi|301028918|ref|ZP_07192087.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           196-1]
 gi|301302086|ref|ZP_07208219.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           124-1]
 gi|301329123|ref|ZP_07222126.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           78-1]
 gi|301643983|ref|ZP_07244006.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           146-1]
 gi|306812957|ref|ZP_07447150.1| nucleoside diphosphate kinase regulator [Escherichia coli NC101]
 gi|307137228|ref|ZP_07496584.1| nucleoside diphosphate kinase regulator [Escherichia coli H736]
 gi|307312673|ref|ZP_07592305.1| GreA/GreB family elongation factor [Escherichia coli W]
 gi|309795524|ref|ZP_07689941.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           145-7]
 gi|312965055|ref|ZP_07779292.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           2362-75]
 gi|312970688|ref|ZP_07784869.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           1827-70]
 gi|331641111|ref|ZP_08342246.1| regulator of nucleoside diphosphate kinase [Escherichia coli H736]
 gi|331645767|ref|ZP_08346870.1| regulator of nucleoside diphosphate kinase [Escherichia coli M605]
 gi|331651619|ref|ZP_08352638.1| regulator of nucleoside diphosphate kinase [Escherichia coli M718]
 gi|331656637|ref|ZP_08357599.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA206]
 gi|331661974|ref|ZP_08362897.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA143]
 gi|331666962|ref|ZP_08367836.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA271]
 gi|331672151|ref|ZP_08372943.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA280]
 gi|331682030|ref|ZP_08382654.1| regulator of nucleoside diphosphate kinase [Escherichia coli H299]
 gi|332281747|ref|ZP_08394160.1| regulator of nucleoside diphosphate kinase [Shigella sp. D9]
 gi|84028114|sp|P0AFW6|RNK_ECO57 RecName: Full=Regulator of nucleoside diphosphate kinase
 gi|84028115|sp|P0AFW5|RNK_ECOL6 RecName: Full=Regulator of nucleoside diphosphate kinase
 gi|84028116|sp|P0AFW4|RNK_ECOLI RecName: Full=Regulator of nucleoside diphosphate kinase
 gi|84028117|sp|P0AFW7|RNK_SHIFL RecName: Full=Regulator of nucleoside diphosphate kinase
 gi|210060903|pdb|3BMB|A Chain A, Crystal Structure Of A New Rna Polymerase Interacting
           Protein
 gi|210060904|pdb|3BMB|B Chain B, Crystal Structure Of A New Rna Polymerase Interacting
           Protein
 gi|12513506|gb|AAG54945.1|AE005240_11 regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EDL933]
 gi|26106989|gb|AAN79173.1|AE016757_77 Regulator of nucleoside diphosphate kinase [Escherichia coli
           CFT073]
 gi|598118|gb|AAC36933.1| rnk [Escherichia coli]
 gi|1651248|dbj|BAA35239.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
           K12 substr. W3110]
 gi|1778527|gb|AAB40810.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
 gi|1786827|gb|AAC73711.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
           K-12 substr. MG1655]
 gi|13360107|dbj|BAB34072.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. Sakai]
 gi|24050767|gb|AAN42174.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2a
           str. 301]
 gi|30040312|gb|AAP16045.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2a
           str. 2457T]
 gi|73854622|gb|AAZ87329.1| regulator of nucleoside diphosphate kinase [Shigella sonnei Ss046]
 gi|81244469|gb|ABB65177.1| regulator of nucleoside diphosphate kinase [Shigella boydii Sb227]
 gi|91071231|gb|ABE06112.1| regulator of nucleoside diphosphate kinase [Escherichia coli UTI89]
 gi|110342432|gb|ABG68669.1| regulator of nucleoside diphosphate kinase [Escherichia coli 536]
 gi|110614153|gb|ABF02820.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 5
           str. 8401]
 gi|115511954|gb|ABJ00029.1| regulator of nucleoside diphosphate kinase [Escherichia coli APEC
           O1]
 gi|157065786|gb|ABV05041.1| regulator of nucleoside diphosphate kinase [Escherichia coli HS]
 gi|169755959|gb|ACA78658.1| GreA/GreB family elongation factor [Escherichia coli ATCC 8739]
 gi|169888026|gb|ACB01733.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|169888127|gb|ACB01834.1| regulator of nucleoside diphosphate kinase [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170519247|gb|ACB17425.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           SMS-3-5]
 gi|187428788|gb|ACD08062.1| regulator of nucleoside diphosphate kinase [Shigella boydii CDC
           3083-94]
 gi|187769767|gb|EDU33611.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4196]
 gi|188017705|gb|EDU55827.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4113]
 gi|188488378|gb|EDU63481.1| regulator of nucleoside diphosphate kinase [Escherichia coli 53638]
 gi|189002814|gb|EDU71800.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189357941|gb|EDU76360.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189360881|gb|EDU79300.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4486]
 gi|189369200|gb|EDU87616.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4501]
 gi|189373770|gb|EDU92186.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC869]
 gi|189379372|gb|EDU97788.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC508]
 gi|190902608|gb|EDV62341.1| regulator of nucleoside diphosphate kinase [Escherichia coli B7A]
 gi|190907446|gb|EDV67043.1| regulator of nucleoside diphosphate kinase [Escherichia coli F11]
 gi|192957577|gb|EDV88022.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           E110019]
 gi|194413971|gb|EDX30248.1| regulator of nucleoside diphosphate kinase [Escherichia coli B171]
 gi|194423609|gb|EDX39599.1| regulator of nucleoside diphosphate kinase [Escherichia coli 101-1]
 gi|208729275|gb|EDZ78876.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208732992|gb|EDZ81680.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208737142|gb|EDZ84826.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158827|gb|ACI36260.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209777348|gb|ACI86986.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
 gi|209777350|gb|ACI86987.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
 gi|209777352|gb|ACI86988.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
 gi|209777354|gb|ACI86989.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
 gi|209777356|gb|ACI86990.1| regulator of nucleoside diphosphate kinase [Escherichia coli]
 gi|209911128|dbj|BAG76202.1| regulator of nucleoside diphosphate kinase [Escherichia coli SE11]
 gi|215263724|emb|CAS08059.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217321314|gb|EEC29738.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. TW14588]
 gi|218350783|emb|CAU96475.1| regulator of nucleoside diphosphate kinase [Escherichia coli 55989]
 gi|218359921|emb|CAQ97464.1| regulator of nucleoside diphosphate kinase [Escherichia coli IAI1]
 gi|218364319|emb|CAR01992.1| regulator of nucleoside diphosphate kinase [Escherichia coli S88]
 gi|218368969|emb|CAR16723.1| regulator of nucleoside diphosphate kinase [Escherichia coli IAI39]
 gi|218425998|emb|CAR06815.1| regulator of nucleoside diphosphate kinase [Escherichia coli ED1a]
 gi|218431041|emb|CAR11917.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           UMN026]
 gi|222032371|emb|CAP75110.1| Regulator of nucleoside diphosphate kinase [Escherichia coli LF82]
 gi|226898627|gb|EEH84886.1| nucleoside diphosphate kinase regulator [Escherichia sp. 3_2_53FAA]
 gi|227838496|gb|EEJ48962.1| nucleoside diphosphate kinase regulator [Escherichia coli 83972]
 gi|238863432|gb|ACR65430.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           BW2952]
 gi|242376386|emb|CAQ31084.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           BL21(DE3)]
 gi|253325449|gb|ACT30051.1| GreA/GreB family elongation factor [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972592|gb|ACT38263.1| nucleoside diphosphate kinase regulator [Escherichia coli B str.
           REL606]
 gi|253976786|gb|ACT42456.1| nucleoside diphosphate kinase regulator [Escherichia coli
           BL21(DE3)]
 gi|254591177|gb|ACT70538.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. TW14359]
 gi|257752512|dbj|BAI24014.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
           O26:H11 str. 11368]
 gi|257763115|dbj|BAI34610.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
           O111:H- str. 11128]
 gi|260450221|gb|ACX40643.1| GreA/GreB family elongation factor [Escherichia coli DH1]
 gi|281177760|dbj|BAI54090.1| regulator of nucleoside diphosphate kinase [Escherichia coli SE15]
 gi|281599915|gb|ADA72899.1| Regulator of nucleoside diphosphate kinase [Shigella flexneri
           2002017]
 gi|284920411|emb|CBG33472.1| regulator of nucleoside diphosphate kinase [Escherichia coli 042]
 gi|290761436|gb|ADD55397.1| Regulator of nucleoside diphosphate kinase [Escherichia coli O55:H7
           str. CB9615]
 gi|291325250|gb|EFE64665.1| hypothetical protein ECCG_03607 [Escherichia coli B088]
 gi|291428459|gb|EFF01484.1| nucleoside diphosphate kinase regulator [Escherichia coli FVEC1412]
 gi|291433965|gb|EFF06938.1| kinase regulator protein [Escherichia coli B185]
 gi|291471914|gb|EFF14397.1| kinase regulator [Escherichia coli B354]
 gi|294491723|gb|ADE90479.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           IHE3034]
 gi|298279347|gb|EFI20855.1| nucleoside diphosphate kinase regulator protein [Escherichia coli
           FVEC1302]
 gi|299878075|gb|EFI86286.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           196-1]
 gi|300304408|gb|EFJ58928.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           200-1]
 gi|300314248|gb|EFJ64032.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           175-1]
 gi|300355468|gb|EFJ71338.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           198-1]
 gi|300396083|gb|EFJ79621.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           69-1]
 gi|300400545|gb|EFJ84083.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           84-1]
 gi|300407175|gb|EFJ90713.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           45-1]
 gi|300412422|gb|EFJ95732.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           115-1]
 gi|300416713|gb|EFK00024.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           182-1]
 gi|300449633|gb|EFK13253.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           116-1]
 gi|300455463|gb|EFK18956.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           21-1]
 gi|300460680|gb|EFK24173.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           187-1]
 gi|300524426|gb|EFK45495.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           119-7]
 gi|300529570|gb|EFK50632.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           107-1]
 gi|300842638|gb|EFK70398.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           124-1]
 gi|300844536|gb|EFK72296.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           78-1]
 gi|301077633|gb|EFK92439.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           146-1]
 gi|305853720|gb|EFM54159.1| nucleoside diphosphate kinase regulator [Escherichia coli NC101]
 gi|306907375|gb|EFN37880.1| GreA/GreB family elongation factor [Escherichia coli W]
 gi|307552481|gb|ADN45256.1| regulator of nucleoside diphosphate kinase [Escherichia coli ABU
           83972]
 gi|307627951|gb|ADN72255.1| nucleoside diphosphate kinase regulator [Escherichia coli UM146]
 gi|308120899|gb|EFO58161.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           145-7]
 gi|310337337|gb|EFQ02475.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           1827-70]
 gi|312290146|gb|EFR18029.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           2362-75]
 gi|312945158|gb|ADR25985.1| nucleoside diphosphate kinase regulator [Escherichia coli O83:H1
           str. NRG 857C]
 gi|313647021|gb|EFS11477.1| regulator of nucleoside diphosphate kinase [Shigella flexneri 2a
           str. 2457T]
 gi|315059866|gb|ADT74193.1| regulator of nucleoside diphosphate kinase [Escherichia coli W]
 gi|315135277|dbj|BAJ42436.1| regulator of nucleoside diphosphate kinase [Escherichia coli DH1]
 gi|315255090|gb|EFU35058.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           85-1]
 gi|315287015|gb|EFU46430.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           110-3]
 gi|315292113|gb|EFU51465.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           153-1]
 gi|315299131|gb|EFU58385.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           16-3]
 gi|315616473|gb|EFU97090.1| regulator of nucleoside diphosphate kinase [Escherichia coli 3431]
 gi|320178397|gb|EFW53365.1| Regulator of nucleoside diphosphate kinase [Shigella boydii ATCC
           9905]
 gi|320185416|gb|EFW60186.1| Regulator of nucleoside diphosphate kinase [Shigella flexneri CDC
           796-83]
 gi|320193018|gb|EFW67658.1| Regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320194208|gb|EFW68840.1| Regulator of nucleoside diphosphate kinase [Escherichia coli
           WV_060327]
 gi|320198263|gb|EFW72867.1| Regulator of nucleoside diphosphate kinase [Escherichia coli
           EC4100B]
 gi|320638060|gb|EFX07824.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
           str. G5101]
 gi|320643466|gb|EFX12636.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H-
           str. 493-89]
 gi|320648801|gb|EFX17428.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H-
           str. H 2687]
 gi|320654387|gb|EFX22434.1| nucleoside diphosphate kinase regulator [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320660068|gb|EFX27598.1| nucleoside diphosphate kinase regulator [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320664865|gb|EFX32000.1| nucleoside diphosphate kinase regulator [Escherichia coli O157:H7
           str. LSU-61]
 gi|323153670|gb|EFZ39918.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           EPECa14]
 gi|323158937|gb|EFZ44948.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           E128010]
 gi|323164059|gb|EFZ49867.1| regulator of nucleoside diphosphate kinase [Shigella sonnei 53G]
 gi|323170735|gb|EFZ56385.1| regulator of nucleoside diphosphate kinase [Escherichia coli LT-68]
 gi|323179914|gb|EFZ65471.1| regulator of nucleoside diphosphate kinase [Escherichia coli 1180]
 gi|323184899|gb|EFZ70267.1| regulator of nucleoside diphosphate kinase [Escherichia coli 1357]
 gi|323191248|gb|EFZ76512.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           RN587/1]
 gi|323379570|gb|ADX51838.1| GreA/GreB family elongation factor [Escherichia coli KO11]
 gi|323938372|gb|EGB34626.1| hypothetical protein ERCG_00408 [Escherichia coli E1520]
 gi|323943025|gb|EGB39184.1| hypothetical protein ERDG_00362 [Escherichia coli E482]
 gi|323945085|gb|EGB41147.1| hypothetical protein EREG_03269 [Escherichia coli H120]
 gi|323952811|gb|EGB48679.1| hypothetical protein ERKG_00584 [Escherichia coli H252]
 gi|323958369|gb|EGB54075.1| hypothetical protein ERLG_00359 [Escherichia coli H263]
 gi|323963179|gb|EGB58747.1| hypothetical protein ERGG_00365 [Escherichia coli H489]
 gi|323972149|gb|EGB67362.1| hypothetical protein ERHG_01878 [Escherichia coli TA007]
 gi|323976407|gb|EGB71497.1| hypothetical protein ERFG_02843 [Escherichia coli TW10509]
 gi|324006326|gb|EGB75545.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           57-2]
 gi|324010532|gb|EGB79751.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           60-1]
 gi|324016122|gb|EGB85341.1| regulator of nucleoside diphosphate kinase [Escherichia coli MS
           117-3]
 gi|324116685|gb|EGC10600.1| hypothetical protein ERBG_03361 [Escherichia coli E1167]
 gi|326341362|gb|EGD65154.1| Regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. 1044]
 gi|326345859|gb|EGD69598.1| Regulator of nucleoside diphosphate kinase [Escherichia coli
           O157:H7 str. 1125]
 gi|330910372|gb|EGH38882.1| regulator of nucleoside diphosphate kinase [Escherichia coli AA86]
 gi|331037909|gb|EGI10129.1| regulator of nucleoside diphosphate kinase [Escherichia coli H736]
 gi|331044519|gb|EGI16646.1| regulator of nucleoside diphosphate kinase [Escherichia coli M605]
 gi|331049897|gb|EGI21955.1| regulator of nucleoside diphosphate kinase [Escherichia coli M718]
 gi|331054885|gb|EGI26894.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA206]
 gi|331060396|gb|EGI32360.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA143]
 gi|331066186|gb|EGI38070.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA271]
 gi|331070618|gb|EGI41981.1| regulator of nucleoside diphosphate kinase [Escherichia coli TA280]
 gi|331080709|gb|EGI51883.1| regulator of nucleoside diphosphate kinase [Escherichia coli H299]
 gi|332094282|gb|EGI99333.1| regulator of nucleoside diphosphate kinase [Shigella boydii
           5216-82]
 gi|332097740|gb|EGJ02714.1| regulator of nucleoside diphosphate kinase [Shigella boydii
           3594-74]
 gi|332104099|gb|EGJ07445.1| regulator of nucleoside diphosphate kinase [Shigella sp. D9]
 gi|332341957|gb|AEE55291.1| regulator of nucleoside diphosphate kinase [Escherichia coli
           UMNK88]
 gi|332760859|gb|EGJ91147.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
           4343-70]
 gi|332761226|gb|EGJ91512.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
           2747-71]
 gi|332763907|gb|EGJ94145.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
           K-671]
 gi|332768128|gb|EGJ98313.1| prokaryotic transcription elongation factor GreA/GreB [Shigella
           flexneri 2930-71]
 gi|333007955|gb|EGK27431.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
           K-218]
 gi|333010014|gb|EGK29449.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
           K-272]
 gi|333020847|gb|EGK40107.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
           K-227]
 gi|333021406|gb|EGK40656.1| regulator of nucleoside diphosphate kinase [Shigella flexneri
           K-304]
          Length = 136

 Score = 62.9 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V   +    +  +S+ +P
Sbjct: 34  LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126


>gi|160897843|ref|YP_001563425.1| GreA/GreB family elongation factor [Delftia acidovorans SPH-1]
 gi|160363427|gb|ABX35040.1| GreA/GreB family elongation factor [Delftia acidovorans SPH-1]
          Length = 134

 Score = 62.9 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RA+V++   M  + +   +TV      SG      +V  +E D  S  VS+ +P
Sbjct: 33  LEAELDRADVLEPKEMPPNVVTMNSTVRFTLLESGKSNTLTLVYPKEMDGSSDKVSVFAP 92

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +  AL+G  +GD   +  P G+ T  +  + +
Sbjct: 93  VGIALLGLSVGDQSRMAGPSGQVTVRVDAIEF 124


>gi|312963811|ref|ZP_07778282.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
 gi|311281846|gb|EFQ60456.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
          Length = 136

 Score = 62.9 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           E Q       AEL+         ++       +   ++V   E+ SG   +  +V  ++A
Sbjct: 25  ETQPGVTALQAELDRAEAVVGHDEVPA---TVVTMNSSVHCREQGSGKDYHLTLVYPKDA 81

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
           +   G +SI +P+  AL+G ++G  I   APGG+    E+L V 
Sbjct: 82  NADEGKISILAPVGSALLGLQVGQHIDWPAPGGKTLKLELLSVE 125


>gi|306841739|ref|ZP_07474425.1| nucleoside diphosphate kinase regulator [Brucella sp. BO2]
 gi|306288144|gb|EFM59531.1| nucleoside diphosphate kinase regulator [Brucella sp. BO2]
          Length = 169

 Score = 62.9 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 2/105 (1%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A       E    EL   + RA+V+    +  + +  G+TV     N G ++   +V   
Sbjct: 25  ASNASERFEEIAEELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPG 83

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
           EAD+    +SI +PI  ALIG   G  IS  A  G++    +L+V
Sbjct: 84  EADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKV 128


>gi|84499314|ref|ZP_00997602.1| putative nucleoside diphosphate kinase regulator [Oceanicola
           batsensis HTCC2597]
 gi|84392458|gb|EAQ04669.1| putative nucleoside diphosphate kinase regulator [Oceanicola
           batsensis HTCC2597]
          Length = 147

 Score = 62.5 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   I RA ++  + +  + +A G  V+  ++ +G +K    V  ++AD+  G +SI +P
Sbjct: 45  LLGEIGRARIVPAAKLPQNVVAIGRAVTYRDETTGQEKRVTPVFPEDADIARGRISILTP 104

Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQV 155
           I  ALIG   G  +  +   GE+    +L V
Sbjct: 105 IGVALIGLAEGASLHWDTRDGERRVLTVLHV 135


>gi|330812543|ref|YP_004357005.1| GreA-GreB family transcriptional regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327380651|gb|AEA72001.1| putative transcriptional regulator, GreA-GreB family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 136

 Score = 62.5 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 84  DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
           D +   + V   E++SG   +  +V  Q+A+   G +SI +P+  AL+G ++G  I   A
Sbjct: 52  DVVTMNSRVHCREESSGKDYHLTLVYPQDANADEGRISILAPVGSALLGLKVGQHIDWPA 111

Query: 144 PGGEK-TYEILQVL 156
           PGG+     +L+V 
Sbjct: 112 PGGKTLKLTLLEVE 125


>gi|283784385|ref|YP_003364250.1| regulator of nucleoside diphosphate kinase [Citrobacter rodentium
           ICC168]
 gi|282947839|emb|CBG87399.1| regulator of nucleoside diphosphate kinase [Citrobacter rodentium
           ICC168]
          Length = 136

 Score = 62.5 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA +    TM  D +   + V     + G+ +   +V        +  +S+ +P
Sbjct: 34  LNAELDRARMCSPETMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAAMTDSNTQLSLMAP 93

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDTIHWQLPGGVSAHLEVLELEY 126


>gi|163748064|ref|ZP_02155383.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45]
 gi|161378670|gb|EDQ03120.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45]
          Length = 145

 Score = 62.5 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 9/135 (6%)

Query: 22  RQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTM 81
           R+   +P+I+ + +       LSE         +   N     +L   + RA ++    +
Sbjct: 8   RRSPRKPKIVLSSTRLAELEALSEG--------MMRRNPELAEQLVEELGRARIVTPQRL 59

Query: 82  SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV 141
             D +  G  V+  ++ +G      +V  Q AD+ +GLVS+ +PI  ALIG   G +   
Sbjct: 60  RADVVDLGREVTYHDEATGKDHTVTLVLPQTADISNGLVSVMTPIGVALIGLAEGAVFHW 119

Query: 142 NAPGG-EKTYEILQV 155
               G  +  +IL+V
Sbjct: 120 ETREGQRRELKILKV 134


>gi|121998926|ref|YP_001003713.1| GreA/GreB family elongation factor [Halorhodospira halophila SL1]
 gi|121590331|gb|ABM62911.1| GreA/GreB family elongation factor [Halorhodospira halophila SL1]
          Length = 137

 Score = 62.5 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 9/134 (6%)

Query: 25  EERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGD 84
           E RP I+ +  +A     L ++   + A   Q   E  +A       RAE+++ + +   
Sbjct: 2   ETRPEIVISSRDAERLEKLIDSLP-KGAFPGQEDLENELA-------RAEIVEPNEVPPG 53

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   +TV    + + ++ +  +V  ++ D   G +SI +P+  AL+G   G+ I    P
Sbjct: 54  VVTMNSTVRFRVEATEEEFSLTLVYPKDVDSSGGTLSIFAPVGSALLGLSQGEEIEWPRP 113

Query: 145 -GGEKTYEILQVLW 157
            GG     I ++L+
Sbjct: 114 GGGAHRVRIEEILY 127


>gi|194432543|ref|ZP_03064829.1| regulator of nucleoside diphosphate kinase [Shigella dysenteriae
           1012]
 gi|194419104|gb|EDX35187.1| regulator of nucleoside diphosphate kinase [Shigella dysenteriae
           1012]
 gi|332096848|gb|EGJ01838.1| regulator of nucleoside diphosphate kinase [Shigella dysenteriae
           155-74]
          Length = 136

 Score = 62.5 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V   +    +  +S+ +P
Sbjct: 34  LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126


>gi|333007715|gb|EGK27192.1| regulator of nucleoside diphosphate kinase [Shigella flexneri VA-6]
          Length = 136

 Score = 62.5 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V       G+ +   +V   +    +  +S+ +P
Sbjct: 34  LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLRDGEVRVRTLVYPAKMTDSNTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126


>gi|193063403|ref|ZP_03044493.1| regulator of nucleoside diphosphate kinase [Escherichia coli E22]
 gi|260842837|ref|YP_003220615.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
           O103:H2 str. 12009]
 gi|192930987|gb|EDV83591.1| regulator of nucleoside diphosphate kinase [Escherichia coli E22]
 gi|257757984|dbj|BAI29481.1| nucleoside diphosphate kinase regulator RnK [Escherichia coli
           O103:H2 str. 12009]
          Length = 136

 Score = 62.5 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++     M  D +   + V     + G+ +   +V   +    +  +S+ +P
Sbjct: 34  LNAELDRAQMCSPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +GD I    PGG     E+L++ +
Sbjct: 94  VGAALLGLRVGDSIHWELPGGVATHLEVLELEY 126


>gi|119387447|ref|YP_918481.1| nucleoside diphosphate kinase regulator [Paracoccus denitrificans
           PD1222]
 gi|119378022|gb|ABL72785.1| GreA/GreB family elongation factor [Paracoccus denitrificans
           PD1222]
          Length = 137

 Score = 62.5 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 1/105 (0%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A+     N      L   + RA V+  + M  D    G+ V+  ++ +G ++   +V  +
Sbjct: 23  AEAAMARNPELADRLLAELARARVLPPARMPADVAGIGSAVTFRDETTGREQTVVLVWPE 82

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155
           +AD+ +   S+ +PI  ALIG   G   + +   GE +   +L V
Sbjct: 83  DADIAAARASVLTPIGVALIGLRAGARFTWDTRAGETRELTVLSV 127


>gi|120598560|ref|YP_963134.1| GreA/GreB family elongation factor [Shewanella sp. W3-18-1]
 gi|146293361|ref|YP_001183785.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32]
 gi|120558653|gb|ABM24580.1| GreA/GreB family elongation factor [Shewanella sp. W3-18-1]
 gi|145565051|gb|ABP75986.1| GreA/GreB family elongation factor [Shewanella putrefaciens CN-32]
          Length = 135

 Score = 62.1 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RAE++  + M  + +   + V     +S D    ++V  ++A+   G +SI +P
Sbjct: 34  LEAELDRAEIVPATEMPDNVVTMNSLVKFSVSSSNDTFCLRLVYPKDANG-EGTISILAP 92

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G   GD I    PGG      I ++++
Sbjct: 93  VGSALLGLSQGDDIEWPGPGGTMVKVRIEEIVY 125


>gi|241764171|ref|ZP_04762206.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN]
 gi|241366508|gb|EER61008.1| GreA/GreB family elongation factor [Acidovorax delafieldii 2AN]
          Length = 303

 Score = 62.1 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 4/137 (2%)

Query: 23  QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG--RMAELENIITRAEVIDIST 80
              ER   +   S A    D+      +A        E    + ELE+ I RA V+D   
Sbjct: 159 MHSERYLRLLRESPAADTTDIYITELDKARLRSLVEQEQGATIFELEHEIERAIVVDPRQ 218

Query: 81  MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
           ++ D +   +   L       +    +V  +EAD ++G +S+ S I  A++G + GD  S
Sbjct: 219 VAEDVVTMNSKALLQ--VDDAELEVALVYPEEADDRAGKLSVCSDIGTAILGYKEGDAFS 276

Query: 141 VNAPGGEKTYEILQVLW 157
              P       I +VL+
Sbjct: 277 WRIPNRTCHIRIAKVLY 293


>gi|188583383|ref|YP_001926828.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001]
 gi|179346881|gb|ACB82293.1| GreA/GreB family elongation factor [Methylobacterium populi BJ001]
          Length = 137

 Score = 62.1 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 2/118 (1%)

Query: 40  YGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNS 99
             D  E     AA  +    E   + L + + R +++   T  GD    G+ V   + ++
Sbjct: 16  TADDHERLSRLAASAMDRAPEV-ASFLSDELDRVQIVRGGTAEGDFARMGSRVDFRDNST 74

Query: 100 GDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
           G  ++  +V   +AD+  G VSI +PI  ALIG   G  I      GE +   +L+V 
Sbjct: 75  GRMQSVTLVYPGDADIAQGKVSILTPIGAALIGLSKGQSIDWATRTGEIRRLTVLEVR 132


>gi|328886579|emb|CCA59818.1| transcription elongation factor, putative [Streptomyces venezuelae
           ATCC 10712]
          Length = 155

 Score = 62.1 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 7/152 (4%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEA--RAYGDLSENAEYQAAKELQNLNEGR 62
            P+++   + +++EL   +  ER  +   + +      GD ++ A+           + R
Sbjct: 6   EPISAAAREALERELDELRT-EREAVAVTLRDGGGDETGDRADQADELQRGTELTRLDRR 64

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           + EL   +  A V        D +  G+TV++  ++ G +   QI     A + + +V+ 
Sbjct: 65  IDELHGRLREAAV--AGAPRTDAVGVGSTVTVRFED-GTETTVQIGEVA-AVLDATMVTA 120

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
            SP+  AL+G   GD ++   P G  T  ++ 
Sbjct: 121 DSPLGGALLGHRAGDTVTYVTPQGRTTAVVVS 152


>gi|148252734|ref|YP_001237319.1| transcription elongation factor regulatory protein [Bradyrhizobium
           sp. BTAi1]
 gi|146404907|gb|ABQ33413.1| GreA/GreB family elongation factor [Bradyrhizobium sp. BTAi1]
          Length = 160

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 22/152 (14%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRI-IKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
             VT  G   ++ +L   Q        I+ ++E R    L                    
Sbjct: 29  NLVTEAGLKALEDQLHQAQAAHEAAQAIEDVNERRRESALPL---------------RDA 73

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
                 +  A+V+     S + IAFG+TV+  E+  G  + Y+IVG+ EAD + G++S  
Sbjct: 74  RYFATRLRTAQVM-PQPSSTETIAFGSTVTF-ERGDGRVQTYRIVGEDEADPKRGMISYV 131

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+AR L+GK +GD++ ++     +T EI  +
Sbjct: 132 SPVARLLMGKSVGDVVEMS----GQTIEITAI 159


>gi|146280271|ref|YP_001170427.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145558512|gb|ABP73122.1| hypothetical protein Rsph17025_4275 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 146

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L N +T A ++  + +  D +  G+ V   +      +   +   ++AD+    VSI +P
Sbjct: 38  LINKLTSARLLAPARLPSDVVTIGSEVLYHDDQGARDRRVTLSWPEDADISRRSVSILTP 97

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQV 155
           +  AL+G   GD        GE ++  +LQV
Sbjct: 98  VGVALLGLSAGDRFQWQTRAGERRSLTVLQV 128


>gi|319426662|gb|ADV54736.1| regulator of nucleoside diphosphate kinase, Rnk [Shewanella
           putrefaciens 200]
          Length = 135

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RAE++  + M  + +   + V     +S D    ++V  ++A+   G +SI +P
Sbjct: 34  LEAELDRAEIVPATEMPDNVVTMNSLVKFSVSSSNDTFCLRLVYPKDANG-EGTISILAP 92

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G   GD I    PGG      I ++++
Sbjct: 93  VGSALLGLSQGDDIEWPGPGGTMVKVRIEEIVY 125


>gi|332561347|ref|ZP_08415662.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides
           WS8N]
 gi|332274146|gb|EGJ19463.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides
           WS8N]
          Length = 146

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +T A ++  + +  D +  G+ V   +      +   +   ++AD+    VSI +P
Sbjct: 38  LITKLTSARLLAPARLPSDVVTIGSEVLYHDDQGARDRRVTLSWPEDADISRRSVSILTP 97

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQV 155
           +  AL+G   GD        GE ++  +LQV
Sbjct: 98  VGVALLGLSAGDRFQWQTRAGERRSLTVLQV 128


>gi|254562838|ref|YP_003069933.1| transcription elongation factor GreA-related [Methylobacterium
           extorquens DM4]
 gi|254270116|emb|CAX26106.1| putative transcription elongation factor GreA-related
           [Methylobacterium extorquens DM4]
          Length = 75

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 88  FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
            G+ V   + ++G  ++  +V   EAD++ G VSI +PI  ALIG   G  I      GE
Sbjct: 1   MGSRVDFRDNSTGRMQSVTLVYPGEADIEQGKVSILTPIGAALIGLSKGQSIDWATRTGE 60

Query: 148 -KTYEILQVL 156
            +   +L V 
Sbjct: 61  TRRLTVLAVR 70


>gi|221634522|ref|YP_002523210.1| regulator of nucleoside diphosphate kinase protein [Rhodobacter
           sphaeroides KD131]
 gi|221163395|gb|ACM04357.1| regulator of nucleoside diphosphate kinase protein [Rhodobacter
           sphaeroides KD131]
          Length = 133

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +T A ++  + +  D +  G+ V   +      +   +   ++AD+    VSI +P
Sbjct: 25  LITKLTSARLLAPARLPSDVVTIGSEVLYHDDQGARDRRVTLSWPEDADISRRSVSILTP 84

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQV 155
           +  AL+G   GD        GE ++  +LQV
Sbjct: 85  VGVALLGLSAGDRFQWQTRAGERRSLTVLQV 115


>gi|125654694|ref|YP_001033887.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides
           2.4.1]
 gi|77386354|gb|ABA81782.1| putative regulator of nucleoside diphosphate kinase protein
           [Rhodobacter sphaeroides 2.4.1]
          Length = 146

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +T A ++  + +  D +  G+ V   +      +   +   ++AD+    VSI +P
Sbjct: 38  LITKLTSARLLAPARLPSDVVTIGSEVLYHDDQGARDRRVTLSWPEDADISRRSVSILTP 97

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQV 155
           +  AL+G   GD        GE ++  +LQV
Sbjct: 98  VGVALLGLSAGDRFQWQTRAGERRSLTVLQV 128


>gi|213622210|ref|ZP_03374993.1| transcription elongation factor GreA [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 42

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/42 (47%), Positives = 31/42 (73%)

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
             L+S++SPIAR LIGKE  D++ +  PGG+  YE+L+V ++
Sbjct: 1   QNLISVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL 42


>gi|56459738|ref|YP_155019.1| transcription elongation factor family protein [Idiomarina
           loihiensis L2TR]
 gi|56178748|gb|AAV81470.1| Transcription elongation factor family protein [Idiomarina
           loihiensis L2TR]
          Length = 129

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 40/91 (43%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE  + RA++++ + M  +       V+     +G      +    + D     +S+ +
Sbjct: 37  ELEVELARAKIVEPNVMPANVACLNRQVTFKVLETGKVFTKTLTAPDQVDKYDDSLSVFA 96

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+  ALIG  +G  I      G ++ EI+ V
Sbjct: 97  PLGAALIGLSVGQSIQWKTNRGLQSVEIVHV 127


>gi|290958510|ref|YP_003489692.1| hypothetical protein SCAB_40691 [Streptomyces scabiei 87.22]
 gi|260648036|emb|CBG71144.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
          Length = 1845

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 62/153 (40%), Gaps = 9/153 (5%)

Query: 6    PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
             ++     ++Q+EL+  Q      + + ++   +    ++ A++   ++        +  
Sbjct: 1700 RLSVAAHRRVQRELQRVQDALDQPLPEIVAVDSSSR-KAQLADHDRRRQALQERRSHLRA 1758

Query: 66   LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
            + + +      D S   G  +  G  V + + +      Y+I     A  ++  +S  +P
Sbjct: 1759 VLDQVVP----DSSLTGGAMVVPGCLVGVEDPDEPGIMTYEIAML--AGDEAERLSPDTP 1812

Query: 126  IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
              +AL+ +E+GD +S     G +   I  V +I
Sbjct: 1813 QGKALMWREVGDEVSWQTERGTRMRVI--VRYI 1843


>gi|119897107|ref|YP_932320.1| putative regulator of nucleoside diphosphate kinase [Azoarcus sp.
           BH72]
 gi|119669520|emb|CAL93433.1| putative regulator of nucleoside diphosphate kinase [Azoarcus sp.
           BH72]
          Length = 135

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 3/115 (2%)

Query: 42  DLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD 101
           DL       AA   ++  +     L   + RA+V +   M  D I   +     E+ SG 
Sbjct: 11  DLERLEGLLAAPAARSRCDLDA--LRAELDRADVREPEEMPADVITMNSRARFREETSGR 68

Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQV 155
           +    +   ++AD  +G VS+ SP   AL+G   G  I    P G     ++L+V
Sbjct: 69  EYELTLAYPKDADGAAGKVSVFSPAGSALLGLAAGQAIDWRTPEGSAIRLQVLEV 123


>gi|329847111|ref|ZP_08262139.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Asticcacaulis biprosthecum C19]
 gi|328842174|gb|EGF91743.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Asticcacaulis biprosthecum C19]
          Length = 159

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 16/137 (11%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT +G  ++Q                A + A++ G++S++      +         + 
Sbjct: 28  NLVTPQGLAQLQ--------AAFAEAKAAYTAAQSSGEVSDD------RTAMARATRDLR 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+ ++  T+    + FG TV++ E+  G  + ++IVG+ EAD + G +S  S
Sbjct: 74  YYTARLGSAQPVEPVTVPQAVV-FGCTVTI-ERADGRTQTFRIVGEDEADPKQGSISYVS 131

Query: 125 PIARALIGKELGDIISV 141
           P+A+AL+GK L D + +
Sbjct: 132 PLAQALMGKTLDDEVRL 148


>gi|158426269|ref|YP_001527561.1| transcription elongation factor regulatory protein [Azorhizobium
           caulinodans ORS 571]
 gi|158333158|dbj|BAF90643.1| transcription elongation factor protein [Azorhizobium caulinodans
           ORS 571]
          Length = 159

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 46  NAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY 105
             + QA +         +         A++++          FG TV+L+ +    ++ +
Sbjct: 55  EGDVQADRTAMARATRDLRYYSARRATAQLVEPPEAPETV-QFGVTVTLL-REDDRRQTF 112

Query: 106 QIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +IVG+ EAD   G VS  SP+A AL+GK +GD+  V    G +  EI ++
Sbjct: 113 RIVGEDEADPAQGSVSYVSPLAAALMGKGVGDVALV---AG-REVEIEKI 158


>gi|306845947|ref|ZP_07478514.1| nucleoside diphosphate kinase regulator [Brucella sp. BO1]
 gi|306273582|gb|EFM55427.1| nucleoside diphosphate kinase regulator [Brucella sp. BO1]
          Length = 169

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 2/105 (1%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A       E    EL   + RA+V+    +  + +  G+TV     N G ++   +V   
Sbjct: 25  ASNASERFEEIAEELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPG 83

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
           EAD+    +SI +PI  ALIG   G  IS  A  G++    +L+V
Sbjct: 84  EADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKV 128


>gi|197105386|ref|YP_002130763.1| transcription elongation factor GreA/GreB, family [Phenylobacterium
           zucineum HLK1]
 gi|196478806|gb|ACG78334.1| transcription elongation factor GreA/GreB, family [Phenylobacterium
           zucineum HLK1]
          Length = 161

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 52/152 (34%), Gaps = 23/152 (15%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VTS+G   I++ L                      D         A+           
Sbjct: 27  NYVTSRGLKLIERALADL-------------------DQRIAGCEDEAQ--MAWLRRDQR 65

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                   A+V++      +   FG  V+  +     +   ++VG+ EA+   G +S  +
Sbjct: 66  YWAARRANAQVVESPADPDEVA-FGTRVTFRKDGGAPE-TVELVGEDEAEPAQGRLSWVA 123

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+ARA+IG   G+ + +         EIL V 
Sbjct: 124 PLARAMIGAMPGETVELETRTPAIRLEILAVE 155


>gi|126464873|ref|YP_001041849.1| nucleoside diphosphate kinase regulator [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126106688|gb|ABN79213.1| GreA/GreB family elongation factor [Rhodobacter sphaeroides ATCC
           17029]
          Length = 137

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   +T A ++  + +S D +  G+ V   +      +   +   ++AD+    VSI +P
Sbjct: 38  LITKLTSARLLAPARLSSDVVTIGSEVLYHDDQGARDRRVTLSWPEDADISRRSVSILTP 97

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQV 155
           +  AL+G   GD        GE ++  +LQV
Sbjct: 98  VGVALLGLSAGDRFQWQTRAGERRSLTVLQV 128


>gi|83269510|ref|YP_418801.1| nucleoside diphosphate kinase regulator [Brucella melitensis biovar
           Abortus 2308]
 gi|189022785|ref|YP_001932526.1| nucleoside diphosphate kinase regulator [Brucella abortus S19]
 gi|237817078|ref|ZP_04596070.1| nucleoside diphosphate kinase regulator [Brucella abortus str. 2308
           A]
 gi|260544766|ref|ZP_05820587.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
           abortus NCTC 8038]
 gi|82939784|emb|CAJ12792.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
           melitensis biovar Abortus 2308]
 gi|189021359|gb|ACD74080.1| Prokaryotic transcription elongation factor GreA/GreB [Brucella
           abortus S19]
 gi|237787891|gb|EEP62107.1| nucleoside diphosphate kinase regulator [Brucella abortus str. 2308
           A]
 gi|260098037|gb|EEW81911.1| prokaryotic transcription elongation factor GreA/GreB [Brucella
           abortus NCTC 8038]
          Length = 169

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 2/105 (1%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A       E    EL   + RA+V+    +  + +  G+TV     N G ++   +V   
Sbjct: 25  ASNASERFEEIAEELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPG 83

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
           EAD+    +SI +PI  ALIG   G  IS  A  G++    +L+V
Sbjct: 84  EADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQHELNVLKV 128


>gi|319795584|ref|YP_004157224.1| grea/greb family elongation factor [Variovorax paradoxus EPS]
 gi|315598047|gb|ADU39113.1| GreA/GreB family elongation factor [Variovorax paradoxus EPS]
          Length = 135

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 46/84 (54%)

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           A L +++  AEV+    +  D +   +   LV+ ++G ++   +   ++A+  +G +S+ 
Sbjct: 31  AHLADLLASAEVMSSRAVPCDVVTMNSRAELVDVHTGRRQTLTVCFPKDAEPAAGFISVL 90

Query: 124 SPIARALIGKELGDIISVNAPGGE 147
           SP+  +L+G  +GDI   + P G+
Sbjct: 91  SPVGSSLLGLRVGDIARWHTPNGD 114


>gi|319653573|ref|ZP_08007672.1| hypothetical protein HMPREF1013_04289 [Bacillus sp. 2_A_57_CT2]
 gi|317394772|gb|EFV75511.1| hypothetical protein HMPREF1013_04289 [Bacillus sp. 2_A_57_CT2]
          Length = 149

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 43/105 (40%)

Query: 53  KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
           KE +                      +     ++  G  V+++     D+++Y I    +
Sbjct: 39  KERKKDFLSNYVSEVEKYITLCNQAPAEPPLRKVLIGTKVTVLFDGEDDREDYHICLPDQ 98

Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +D  +G +S  SP+ R L+ K +G+  S+  P G+    I ++ +
Sbjct: 99  SDPDNGCISFLSPVGRQLLLKNMGEQTSLIIPSGQLDVVIEKISY 143


>gi|192292723|ref|YP_001993328.1| transcription elongation factor regulatory protein
           [Rhodopseudomonas palustris TIE-1]
 gi|192286472|gb|ACF02853.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           TIE-1]
          Length = 160

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 20/152 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT+ G   ++                A+  A A  D++E       +  + +      
Sbjct: 29  NLVTAAGLAALE--------GLLAEAKAALEAAGAIEDVNER------RRAEAIPLRDAR 74

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+V+     S D IAFG+TV+   +  G  + Y+IVG+ EAD  +G +S  +
Sbjct: 75  YYAARVRSAQVM-PDPPSTDEIAFGSTVTFR-RADGRVQTYRIVGEDEADPNAGTISFVA 132

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+AR L+GK +GD++      G +  E++ V 
Sbjct: 133 PVARLLMGKSVGDVV----GKGAQELEVVGVK 160


>gi|49076904|gb|AAT49613.1| PA5274 [synthetic construct]
          Length = 135

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  ++RA+V+    +    +   +TV   E++SG +    +V  ++     G VSI +P
Sbjct: 33  LEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSGKEYTLTLVYPEDV-AGEGKVSILAP 91

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G  +G  I   AP G+     +L++ +
Sbjct: 92  VGTALLGLTIGQTIDWPAPSGKTLKLTLLEIEY 124


>gi|163844766|ref|YP_001622421.1| nucleoside diphosphate kinase regulator [Brucella suis ATCC 23445]
 gi|163675489|gb|ABY39599.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 169

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A       E    EL   + RA+V+    +  + +  G+TV     N G ++   +V   
Sbjct: 25  ASNASERFEEIAEELMAELDRAKVVTAKRIPENVVQMGSTVEFR-ANDGHERRVTLVYPG 83

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
           EAD+    +S  +PI  ALIG   G  IS  A  G++    +L+V
Sbjct: 84  EADIAKNRISTLTPIGTALIGLAPGQSISWTARDGKQHELNVLKV 128


>gi|39995942|ref|NP_951893.1| nucleoside diphosphate kinase regulator protein [Geobacter
           sulfurreducens PCA]
 gi|39982706|gb|AAR34166.1| nucleoside diphosphate kinase regulator protein, putative
           [Geobacter sulfurreducens PCA]
 gi|298504957|gb|ADI83680.1| RNA polymerase-binding protein Rnk [Geobacter sulfurreducens KN400]
          Length = 135

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 33/153 (21%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           I VT     ++++ L      +R  +                                  
Sbjct: 6   IYVTEDDLSRLEEILDTIPFRDRKDL---------------------------------Q 32

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LE+ +  A ++D   +  + +   + V L +  +  +    +V   +A++  G +SI S
Sbjct: 33  KLEDELASAMIVDPKDVPPNVVTMNSRVKLRDLRADKEMTISLVFPNDANIAEGKISILS 92

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           PI  A++G   GD + +      K   I +VL+
Sbjct: 93  PIGTAILGFGAGDTLDLAVRSFAKKIRIEEVLY 125


>gi|109896618|ref|YP_659873.1| GreA/GreB family elongation factor [Pseudoalteromonas atlantica
           T6c]
 gi|109698899|gb|ABG38819.1| GreA/GreB family elongation factor [Pseudoalteromonas atlantica
           T6c]
          Length = 128

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 51/113 (45%)

Query: 44  SENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK 103
           ++ AE +   E   L +  +  +EN + RA ++    +  + +A G+ V+    +S    
Sbjct: 12  ADLAELEYQLERSKLPDDAIRAIENELDRATIVACKDLPENVVAIGSQVTFKILDSQKVF 71

Query: 104 NYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
              +    ++      +S+ +PI  ALIG   G  I      G+++ EI++V 
Sbjct: 72  TKALCLPHDSVKFEDSISVFAPIGSALIGLSTGQCIKWQTQRGQQSVEIIKVE 124


>gi|254429947|ref|ZP_05043654.1| hypothetical protein ADG881_3177 [Alcanivorax sp. DG881]
 gi|196196116|gb|EDX91075.1| hypothetical protein ADG881_3177 [Alcanivorax sp. DG881]
          Length = 131

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RA V+    M  D +   + +   E+  G + +  +V  Q  D     VSI +P
Sbjct: 31  LEEELLRATVVAPEAMPADVVTMNSRIRCREQARGREMSLTLVYPQ--DNGPERVSILAP 88

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G  +G  I   AP G+    EIL V +
Sbjct: 89  VGAALLGLSVGQSIDWPAPNGKILKLEILAVEY 121


>gi|229817907|ref|ZP_04448189.1| hypothetical protein BIFANG_03193 [Bifidobacterium angulatum DSM
           20098]
 gi|229784807|gb|EEP20921.1| hypothetical protein BIFANG_03193 [Bifidobacterium angulatum DSM
           20098]
          Length = 114

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 6/113 (5%)

Query: 44  SENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK 103
           SEN  Y AA+E Q +N+GR+ EL   +  A+++        ++  G+ V+L    +G +K
Sbjct: 1   SENGGYHAAREAQRVNQGRIEELTFKLRHAKILTAPPA--GKVGDGSLVTL--DMNGREK 56

Query: 104 NYQIVGDQEADVQSG-LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
            + +     A      ++S  SPI  A+ G ++GD +S  AP G E +  I  
Sbjct: 57  VFVLGSHDLAIATDQAIISPESPIGAAIYGAKVGDTVSYKAPNGREISVTIKD 109


>gi|254492419|ref|ZP_05105591.1| hypothetical protein MDMS009_2761 [Methylophaga thiooxidans DMS010]
 gi|224462311|gb|EEF78588.1| hypothetical protein MDMS009_2761 [Methylophaga thiooxydans DMS010]
          Length = 138

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
            ++A LE+ + RA V++   +  + +   +TV     +S       +V  ++       +
Sbjct: 31  EKVATLEDELERANVVEPVAIPVNVVTMNSTVKFSVSSSQQTFCLTLVYPKDMTNDGKTI 90

Query: 121 SISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           SI +P   A++G   GD I    P G+    ++ ++L+
Sbjct: 91  SILAPAGSAMLGLLEGDEIEWPTPDGKPMKVKVEEILY 128


>gi|227328600|ref|ZP_03832624.1| transcription elongation factor GreA [Pectobacterium carotovorum
          subsp. carotovorum WPP14]
          Length = 79

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/43 (41%), Positives = 29/43 (67%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS 44
          + + P+T +G +K+++EL   +   RP II AI+EAR +GDL 
Sbjct: 1  MKQFPMTLRGAEKLREELDHLKSVRRPEIIAAIAEAREHGDLK 43


>gi|120405731|ref|YP_955560.1| GreA/GreB family elongation factor [Mycobacterium vanbaalenii
           PYR-1]
 gi|119958549|gb|ABM15554.1| GreA/GreB family elongation factor [Mycobacterium vanbaalenii
           PYR-1]
          Length = 159

 Score = 61.3 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 60/154 (38%), Gaps = 14/154 (9%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            D + +T +  + +++EL        P             D      + A KE       
Sbjct: 4   ADYVWMTPQAREDLEKELADLMAVPNPAGTDETERTDQVVDA-----WLARKE------- 51

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           R+ ++  +++RA+    S         G  +++   ++GD + + +     AD +  + +
Sbjct: 52  RIRQIHELLSRADHST-SPADDGIAEPGMVLTVRFDDTGDTETFLLGTRGTADPELEVYT 110

Query: 122 ISSPIARALIGKELGDIISVNAPGGEK-TYEILQ 154
           ++SP+  AL+G   G+  S   P G      +L 
Sbjct: 111 VASPLGSALLGAVPGEQRSFRLPNGSIQQVTVLA 144


>gi|227877960|ref|ZP_03995964.1| possible transcription elongation factor GreA [Lactobacillus
           crispatus JV-V01]
 gi|227862430|gb|EEJ69945.1| possible transcription elongation factor GreA [Lactobacillus
           crispatus JV-V01]
          Length = 85

 Score = 61.3 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 42/72 (58%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
           ++  G TV L   +  + + Y++VG  EAD+ +G VS  SP+ +A++ KE G   +V AP
Sbjct: 14  KVDLGKTVVLKFDDDDETEEYKVVGRMEADLAAGKVSFDSPLGQAIMKKEAGTTATVAAP 73

Query: 145 GGEKTYEILQVL 156
            GE    I++V 
Sbjct: 74  VGEYQVTIVEVK 85


>gi|152985312|ref|YP_001351332.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
           PA7]
 gi|150960470|gb|ABR82495.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
           PA7]
          Length = 134

 Score = 60.9 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  ++RA+V+    +    +   +TV   E++SG +    +V  ++     G VSI +P
Sbjct: 33  LEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSGKEYTLTLVYPEDV-AGEGKVSILAP 91

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G  +G  I   AP G+     +L++ +
Sbjct: 92  VGTALLGLTIGQTIDWPAPSGKTLKLTLLEIEY 124


>gi|15600467|ref|NP_253961.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
           PAO1]
 gi|107104376|ref|ZP_01368294.1| hypothetical protein PaerPA_01005451 [Pseudomonas aeruginosa PACS2]
 gi|116053423|ref|YP_793748.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218894376|ref|YP_002443246.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
           LESB58]
 gi|254238029|ref|ZP_04931352.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
           C3719]
 gi|254243839|ref|ZP_04937161.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
           2192]
 gi|296392131|ref|ZP_06881606.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
           PAb1]
 gi|313106689|ref|ZP_07792907.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
           39016]
 gi|9951587|gb|AAG08659.1|AE004940_3 nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
           PAO1]
 gi|115588644|gb|ABJ14659.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169960|gb|EAZ55471.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
           C3719]
 gi|126197217|gb|EAZ61280.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
           2192]
 gi|218774605|emb|CAW30422.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
           LESB58]
 gi|310879409|gb|EFQ38003.1| nucleoside diphosphate kinase regulator [Pseudomonas aeruginosa
           39016]
          Length = 134

 Score = 60.9 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  ++RA+V+    +    +   +TV   E++SG +    +V  ++     G VSI +P
Sbjct: 33  LEAELSRAQVVGHDEIPPGVVTMNSTVRCREESSGKEYTLTLVYPEDV-AGEGKVSILAP 91

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G  +G  I   AP G+     +L++ +
Sbjct: 92  VGTALLGLTIGQTIDWPAPSGKTLKLTLLEIEY 124


>gi|253997382|ref|YP_003049446.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8]
 gi|253984061|gb|ACT48919.1| GreA/GreB family elongation factor [Methylotenera mobilis JLW8]
          Length = 125

 Score = 60.9 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 56/110 (50%), Gaps = 4/110 (3%)

Query: 47  AEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106
           ++   A+     N+     L + ++RA V+    +  D +   + V  ++++SG  +  +
Sbjct: 10  SDQDYARLSMLANDEL---LGDELSRAIVVPADQVPADVVRINSRVIYLDESSGLSREVE 66

Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
           +V  + AD++ G +S+ SP+  AL+G + G +I    P G  +  +++ V
Sbjct: 67  LVFPEGADLKFGKISVLSPVGSALLGLKEGQVIDWPFPHGQSRRLKVVSV 116


>gi|254000392|ref|YP_003052455.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4]
 gi|313202349|ref|YP_004041007.1| grea/greb family elongation factor [Methylovorus sp. MP688]
 gi|253987071|gb|ACT51928.1| GreA/GreB family elongation factor [Methylovorus sp. SIP3-4]
 gi|312441665|gb|ADQ85771.1| GreA/GreB family elongation factor [Methylovorus sp. MP688]
          Length = 118

 Score = 60.9 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 48/92 (52%), Gaps = 1/92 (1%)

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L + + RA V+    M  D +   + V+ V++++G  +  ++V  +EA+++ G +S+ 
Sbjct: 23  HALSDELDRAIVVPSEKMPPDIVGLNSRVTYVDESNGVSRTIELVLPEEANMEQGKISVL 82

Query: 124 SPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           +P+  AL+G + G  I    P G  +   ++ 
Sbjct: 83  APVGTALLGLKAGQSIEWPFPNGMPRRLRVVS 114


>gi|39936890|ref|NP_949166.1| transcription elongation factor regulatory protein
           [Rhodopseudomonas palustris CGA009]
 gi|39650747|emb|CAE29270.1| putative transcription elongation factor greA homologue
           [Rhodopseudomonas palustris CGA009]
          Length = 176

 Score = 60.9 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 20/151 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT+ G   ++                A+  A A  D++E       +  + +      
Sbjct: 45  NLVTAAGLAALE--------GLLAEAKAALEAAGAIEDVNER------RRAEAIPLRDAR 90

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+V+     S D IAFG+TV+   +  G  + Y+IVG+ EAD  +G +S  +
Sbjct: 91  YYAARVRSAQVM-PDPPSIDEIAFGSTVTFR-RADGRVQTYRIVGEDEADPNAGTISFVA 148

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+AR L+GK +GD++      G +  E++ +
Sbjct: 149 PVARLLMGKSVGDVV----GKGAQELEVVGI 175


>gi|312602260|ref|YP_004022105.1| regulator of nucleoside diphosphate kinase [Burkholderia
           rhizoxinica HKI 454]
 gi|312169574|emb|CBW76586.1| Regulator of nucleoside diphosphate kinase [Burkholderia
           rhizoxinica HKI 454]
          Length = 195

 Score = 60.9 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 57/111 (51%), Gaps = 3/111 (2%)

Query: 48  EYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107
           E  AA+       G    L+ ++ RA V++ + +    +   +TV+L   +SG++  + +
Sbjct: 77  ERHAAQASPQS--GYQTMLDALLERAAVVEATDIDPSVVTMNSTVTLSNPSSGERMTWTV 134

Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           V    AD   G +++ SP+  AL+G   GD + V  P G  +T ++ Q+++
Sbjct: 135 VYPPNADFSQGRLNVFSPVGLALLGATPGDELRVTPPSGAPQTLKVEQIVF 185


>gi|145222535|ref|YP_001133213.1| GreA/GreB family elongation factor [Mycobacterium gilvum PYR-GCK]
 gi|315442983|ref|YP_004075862.1| GreA/GreB family elongation factor [Mycobacterium sp. Spyr1]
 gi|145215021|gb|ABP44425.1| GreA/GreB family elongation factor [Mycobacterium gilvum PYR-GCK]
 gi|315261286|gb|ADT98027.1| GreA/GreB family elongation factor [Mycobacterium sp. Spyr1]
          Length = 157

 Score = 60.9 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 20/154 (12%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            D I ++ +  + ++QEL        P     + +A           + A KE       
Sbjct: 4   ADTIWMSPQTRESLEQELAALMAAPGPAGSDEVVDA-----------WLARKERIR---- 48

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           ++ EL      A  +D +           TV   +   GD + + +      D +  + S
Sbjct: 49  QIHELLTKAEHA--VDPADDGVAEPGMVLTVRFDDA--GDTETFLLGTRATVDSELDVYS 104

Query: 122 ISSPIARALIGKELGDIISVNAPG-GEKTYEILQ 154
           ++SP+  AL+G   G   S   P  G +   +L 
Sbjct: 105 VNSPMGSALLGATPGQQRSYQLPNGGTQQVTLLS 138


>gi|115523623|ref|YP_780534.1| transcription elongation factor regulatory protein
           [Rhodopseudomonas palustris BisA53]
 gi|115517570|gb|ABJ05554.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           BisA53]
          Length = 160

 Score = 60.9 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 22/152 (14%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRI-IKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
             VT+ G   ++Q+L   +        I+ ++E R      E    + A           
Sbjct: 29  NWVTAGGLQALEQQLAAARAAVEAAAVIEDVNERR----RQEAGPLRDA----------- 73

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   +  A++I   T +     FG TV+   +  G  + Y+IVG+ EAD ++G +S  
Sbjct: 74  RYLAARVRTAQLIAEPTSTEAVA-FGHTVTFR-RADGRVQTYRIVGEDEADPKAGSISFV 131

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+AR L+ K +GD++      G+   EI+ +
Sbjct: 132 SPVARLLMRKAVGDVV----GAGDHELEIIAI 159


>gi|159043110|ref|YP_001531904.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12]
 gi|157910870|gb|ABV92303.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12]
          Length = 143

 Score = 60.6 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A  +          L + I RA ++  S M  + ++ G+ V+  ++ +G +K+  +V  +
Sbjct: 32  ADGMMRRQPALADRLFDEIARARIVAPSKMPKNVVSMGSRVTYRDEATGQEKSVTLVYPE 91

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
           EAD+    VS+++PI  AL+G   G        G ++    I+QV 
Sbjct: 92  EADIARLRVSVTTPIGVALLGLAEGASFHWETRGNQRRMLTIIQVE 137


>gi|91224637|ref|ZP_01259898.1| nucleoside diphosphate kinase regulator [Vibrio alginolyticus
           12G01]
 gi|91190525|gb|EAS76793.1| nucleoside diphosphate kinase regulator [Vibrio alginolyticus
           12G01]
          Length = 135

 Score = 60.6 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE  + RA V++   M  + +   +TV              +V   E       +SI +
Sbjct: 33  ELEAELDRATVLEPEQMPDNVVTMNSTVEFKFSGEDRTMTKTLVYPSELKSSDD-ISIFA 91

Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           P+  ALIG  +G  +    P    KT EI+ + +
Sbjct: 92  PVGSALIGLSVGQKLEWPMPNNQVKTIEIVDITY 125


>gi|262369483|ref|ZP_06062811.1| transcription elongation factor GreB [Acinetobacter johnsonii
           SH046]
 gi|262315551|gb|EEY96590.1| transcription elongation factor GreB [Acinetobacter johnsonii
           SH046]
          Length = 100

 Score = 60.6 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 43/92 (46%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           +   +    +ID S     +I FGA V +       K    +  D+  D     +SI SP
Sbjct: 1   MGKRLEELRIIDFSEEQAGKIYFGAWVEIENDEGEQKTLRIVGVDEIYDHHPQHISIDSP 60

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +ARAL+ K++ D I V  P G+K + +  + +
Sbjct: 61  MARALLSKQVDDEIEVLTPTGKKHWYVNSIRY 92


>gi|296103416|ref|YP_003613562.1| nucleoside diphosphate kinase regulator [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057875|gb|ADF62613.1| nucleoside diphosphate kinase regulator [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 136

 Score = 60.6 bits (145), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++    +M  D +   + V      +G++    +V   +    S  +S+ +P
Sbjct: 34  LNEELDRAQMCTPESMPHDVVTMNSQVKFRNLTTGEELTRTLVYPAQMTDSSAQLSVLAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G   GD I    PGG     E+L +L+
Sbjct: 94  VGAALLGLRTGDTIHWELPGGASTHLEVLALLY 126


>gi|77461715|ref|YP_351222.1| nucleoside diphosphate kinase regulator [Pseudomonas fluorescens
           Pf0-1]
 gi|77385718|gb|ABA77231.1| regulator of nucleoside diphosphate kinase [Pseudomonas fluorescens
           Pf0-1]
          Length = 136

 Score = 60.6 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 84  DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
           D +   + V   E++SG   +  +V  + A+   G VSI +P+  AL+G ++G  I   A
Sbjct: 52  DVVTMNSRVHCREESSGKDYHLTLVYPKHANADEGKVSILAPVGSALLGLKVGQHIDWPA 111

Query: 144 PGGEK-TYEILQVL 156
           PGG+     +L+V 
Sbjct: 112 PGGKTLKLTLLEVE 125


>gi|262395367|ref|YP_003287220.1| regulator of nucleoside diphosphate kinase [Vibrio sp. Ex25]
 gi|262338961|gb|ACY52755.1| regulator of nucleoside diphosphate kinase [Vibrio sp. Ex25]
          Length = 135

 Score = 60.2 bits (144), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE  + RA V++   M  + +   +TV              +V   E       +SI +
Sbjct: 33  ELEAELDRATVLEPEQMPDNVVTMNSTVEFKFAGEDRTMTKTLVYPSELKSSDD-ISIFA 91

Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           P+  ALIG  +G  +    P    KT EI+ + +
Sbjct: 92  PVGSALIGLSVGQKLEWPMPNNQVKTIEIVDITY 125


>gi|260466738|ref|ZP_05812924.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum
           WSM2075]
 gi|259029468|gb|EEW30758.1| GreA/GreB family elongation factor [Mesorhizobium opportunistum
           WSM2075]
          Length = 140

 Score = 60.2 bits (144), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 2/105 (1%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A+ L +       EL + + RA + D + M  D +  G+TV++     GD +   +V   
Sbjct: 27  ARALLDRTPEVAEELLSEMDRAVIADAAAMPADVVRMGSTVAVS-SEGGDIQRITLVYPG 85

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
           EAD+    +S+ +P+  ALIG  +G ++  ++  G E +  I  V
Sbjct: 86  EADIAENRISVLTPMGTALIGAAIGQVVCWSSRDGRELSVTIEAV 130


>gi|74095577|emb|CAJ27343.1| conserved hypothetical protein [Cronobacter sakazakii]
          Length = 136

 Score = 60.2 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA ++    M  D +   + V   +  SG+     +V  Q A      +S+ +P
Sbjct: 34  LNDELDRARMVSPQAMPEDVVTMNSRVKFSDLASGETYERLLVYPQNAGSSPEALSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +GD I    P G E   E+L++L+
Sbjct: 94  VGAALLGLRVGDAIRWPLPDGSETHIEVLELLY 126


>gi|292493343|ref|YP_003528782.1| transcription elongation factor [Nitrosococcus halophilus Nc4]
 gi|291581938|gb|ADE16395.1| transcription elongation factor [Nitrosococcus halophilus Nc4]
          Length = 129

 Score = 60.2 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + I  A V+ +  +S + +   + V  ++  +G ++  ++V  +EA+  +G +S+ +P
Sbjct: 26  LAHKIDYAIVVPVGHISSNIVTMHSRVIYLDGKTGIRREVELVYPKEANSDTGKISVLAP 85

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           I  AL+G  +G       P GE ++  + ++L+
Sbjct: 86  IGSALLGLSVGQATDWVFPSGEVRSLRVERILF 118


>gi|295096632|emb|CBK85722.1| Transcription elongation factor [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 136

 Score = 60.2 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++    TM  D +   + V      +G++    +V   +    S  +S+ +P
Sbjct: 34  LNEELDRAQMCTPETMPHDVVTMNSQVKFRNLTTGEELTRTLVYPAQMTDSSTQLSVLAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G   GD I    PGG     E+L++L+
Sbjct: 94  VGAALLGLRTGDTIHWELPGGASAHLEVLELLY 126


>gi|261341234|ref|ZP_05969092.1| regulator of nucleoside diphosphate kinase [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316534|gb|EFC55472.1| regulator of nucleoside diphosphate kinase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 136

 Score = 60.2 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA++    +M  D +   + V+     +G++    +V   +    +  +S+ +P
Sbjct: 34  LNEELDRAQMCTPESMPHDVVTMNSQVTFRNLTTGEELTRTLVYPAQMTDSATQLSVLAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G   GD I  + PGG     E+L +L+
Sbjct: 94  VGAALLGLRTGDTIHWDLPGGASTHLEVLALLY 126


>gi|149174289|ref|ZP_01852916.1| nucleoside diphosphate kinase regulator protein, putative
           [Planctomyces maris DSM 8797]
 gi|148846834|gb|EDL61170.1| nucleoside diphosphate kinase regulator protein, putative
           [Planctomyces maris DSM 8797]
          Length = 137

 Score = 60.2 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 63/155 (40%), Gaps = 30/155 (19%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
            KI +T   + ++Q  L                       LS+  +    K   +     
Sbjct: 4   QKIFITKTDYQRLQNLL-----------------------LSDFTQAIGNKPYLSG---- 36

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
              L   +  A +++   +  D +   +TV L +  + + + Y +V  Q+A+++ G +SI
Sbjct: 37  ---LHAELAVAHIVESEEIPADIVTMNSTVRLRDLETDELETYTLVYPQDANIKEGKLSI 93

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +PI  A++G  +GD +   A  G     + ++L+
Sbjct: 94  LTPIGTAILGYRIGDQLRSRALAGGSKIRVEEILF 128


>gi|84394549|ref|ZP_00993255.1| transcription elongation factor GreA [Vibrio splendidus 12B01]
 gi|84374818|gb|EAP91759.1| transcription elongation factor GreA [Vibrio splendidus 12B01]
          Length = 51

 Score = 60.2 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAK 53
          ++K+P+T +G  K++ EL    +  RP I  AI EAR  GDL ENAEY AA+
Sbjct: 1  MEKVPMTVRGAQKLRDELDRLLK-LRPIISAAIGEARELGDLKENAEYHAAR 51


>gi|183985318|ref|YP_001853609.1| hypothetical protein MMAR_5350 [Mycobacterium marinum M]
 gi|183178644|gb|ACC43754.1| conserved hypothetical protein [Mycobacterium marinum M]
          Length = 161

 Score = 60.2 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 1   MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M +++    +     D +  EL   +Q      I+  ++    GD  + AE     +   
Sbjct: 1   MSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELA 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
           +   R+ EL+  +  A   + +           T+   +          IV +     + 
Sbjct: 61  VLTERIHELDRRLK-AGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEY 119

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             ++  SP+ +AL G++ GD ++ + P G    E+L + 
Sbjct: 120 ETLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIK 158


>gi|146310806|ref|YP_001175880.1| nucleoside diphosphate kinase regulator [Enterobacter sp. 638]
 gi|145317682|gb|ABP59829.1| GreA/GreB family elongation factor [Enterobacter sp. 638]
          Length = 136

 Score = 60.2 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA++    +M  D +   + V   +  SG++    +V   +    S  +S+ +P
Sbjct: 34  LNDELDRAQMCTAESMPHDVVTMNSQVRFRDLTSGEEHTRTLVYPAQMTDSSTQLSVLAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G   GD I    PGG     E+L++L+
Sbjct: 94  VGAALLGLRTGDTIHWELPGGASAHLEVLELLY 126


>gi|167578153|ref|ZP_02371027.1| nucleoside diphosphate kinase regulator, putative [Burkholderia
           thailandensis TXDOH]
 gi|167616284|ref|ZP_02384919.1| nucleoside diphosphate kinase regulator, putative [Burkholderia
           thailandensis Bt4]
          Length = 132

 Score = 60.2 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 55/105 (52%), Gaps = 1/105 (0%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           +    N      L+ ++ RA++++   +  + +   + + L+++ +G    + IV    A
Sbjct: 18  KHAERNPHYQEMLDTLLERADIVEPDKIQANVVTMNSQIKLLDETAGQDMTWTIVYPDAA 77

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           + + G +++ SP+  AL+G   G+ + V  PGG   T +I+++++
Sbjct: 78  NFEHGRLNVFSPVGMALLGARRGERVKVTLPGGTDATLKIVEIVY 122


>gi|291326552|ref|ZP_06124973.2| regulator of nucleoside diphosphate kinase [Providencia rettgeri
           DSM 1131]
 gi|291313526|gb|EFE53979.1| regulator of nucleoside diphosphate kinase [Providencia rettgeri
           DSM 1131]
          Length = 143

 Score = 60.2 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA+++    +  D +   +TV  ++  S +++   +V        +  +S+ +P
Sbjct: 41  LNDELDRADILSPQEIPADVVTMNSTVRFLDLISNEERTRTLVYPASLKDSAEQLSVMAP 100

Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
           I  AL+G  + D IS   P G +T   +L++++
Sbjct: 101 IGAALLGLHVNDEISWELPNGVQTRVRVLEIVY 133


>gi|156934868|ref|YP_001438784.1| nucleoside diphosphate kinase regulator [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533122|gb|ABU77948.1| hypothetical protein ESA_02716 [Cronobacter sakazakii ATCC BAA-894]
          Length = 136

 Score = 60.2 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA ++    M  D +   + V   +  SG+     +V  Q A      +S+ +P
Sbjct: 34  LNDELDRARMVSPQAMPEDVVTMNSRVKFRDLASGETYERLLVYPQNAGSSPEALSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +GD I    P G E   E+L++L+
Sbjct: 94  VGAALLGLRVGDAIRWPLPDGSETHIEVLELLY 126


>gi|192360518|ref|YP_001983831.1| regulator of nucleoside diphosphate kinase [Cellvibrio japonicus
           Ueda107]
 gi|190686683|gb|ACE84361.1| regulator of nucleoside diphosphate kinase [Cellvibrio japonicus
           Ueda107]
          Length = 180

 Score = 60.2 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  I RA ++  + +  D +A  + V+  + +SG++K  Q+V   +A+V    +SI SP
Sbjct: 86  LDIEIGRATLVADAQLPADVVAMDSEVTFEDLDSGEQKTIQLVFPAQANVDQLKISILSP 145

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVL 156
           +  ALIG  +G  I    P G+ +  +++ V 
Sbjct: 146 VGSALIGLRIGSSIDWPVPQGKVRRLKVIAVK 177


>gi|307140092|ref|ZP_07499448.1| transcription elongation factor GreB [Escherichia coli H736]
          Length = 68

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 39/66 (59%)

Query: 93  SLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
             +E + G    ++IVG  E   +   +SI SP+ARAL+ KE+GD+  VN P GE ++ +
Sbjct: 1   MEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASWYV 60

Query: 153 LQVLWI 158
             + ++
Sbjct: 61  NAIEYV 66


>gi|15964020|ref|NP_384373.1| nucleoside diphosphate kinase regulator [Sinorhizobium meliloti
           1021]
 gi|307301166|ref|ZP_07580928.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
 gi|307321067|ref|ZP_07600472.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
 gi|15073196|emb|CAC41704.1| Putative regulator of nucleoside diphosphate kinase [Sinorhizobium
           meliloti 1021]
 gi|306893239|gb|EFN24020.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
 gi|306903622|gb|EFN34209.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
          Length = 135

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 46  NAEYQA-----AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
           NAE  A     A    +        L + + RA +     +  D +  G+TV   + ++G
Sbjct: 16  NAEDHARLTAIASSALDRVPDVAEALLSELDRARIAAPGKLPKDSVQMGSTV-AFDADNG 74

Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155
             K  ++V   EAD+++G +S+ +PI  ALIG  +G  I      G+     I  V
Sbjct: 75  FAKEVRLVYPGEADIEAGKISVLTPIGAALIGLSVGQSIDWVDRAGKVHRMTIRSV 130


>gi|213582301|ref|ZP_03364127.1| transcription elongation factor GreA [Salmonella enterica subsp.
          enterica serovar Typhi str. E98-0664]
          Length = 62

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSE 45
          +  IP+T +G +K+++EL + +   RP II AI+EAR +GDL  
Sbjct: 1  MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKR 44


>gi|298292903|ref|YP_003694842.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
 gi|296929414|gb|ADH90223.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
          Length = 142

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A    +       EL+  + RA+V+  +T+    +  G+TV     +   ++   +V   
Sbjct: 27  ATAALDRFPDVAEELQIEMERAQVLSTATIPEGVVQMGSTVEYH-SDVEQRRRITLVYPG 85

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVL 156
           EAD+  G VSI +PI  ALIG   G  I   +  G +    +L+V 
Sbjct: 86  EADIAEGRVSILTPIGAALIGLSAGQSIRWVSRDGREHVLTVLKVE 131


>gi|269968902|ref|ZP_06182875.1| nucleoside diphosphate kinase regulator [Vibrio alginolyticus 40B]
 gi|269826489|gb|EEZ80850.1| nucleoside diphosphate kinase regulator [Vibrio alginolyticus 40B]
          Length = 135

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE  + RA V++   M  + +   +TV              +V   E       +SI +
Sbjct: 33  ELEAELDRATVLEPEQMPDNVVTMNSTVEFKFSGEDRTMTKTLVYPSELKSSDD-ISIFA 91

Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           P+  ALIG  +G  +    P    KT EI+ + +
Sbjct: 92  PVGSALIGLSVGQKLDWPMPNNQVKTIEIVDITY 125


>gi|115377129|ref|ZP_01464343.1| regulator of nucleoside diphosphate kinase [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365838|gb|EAU64859.1| regulator of nucleoside diphosphate kinase [Stigmatella aurantiaca
           DW4/3-1]
          Length = 149

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 1/106 (0%)

Query: 53  KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
           + L+        +LE  + RA V+    +  D +   + V   + ++G ++   +V  +E
Sbjct: 34  RHLEGTKAAAAEQLELELDRARVVRQEQIPPDIVTMRSRVLFEDLDTGRRREASLVYPEE 93

Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           A++    VSI +P+  A++G ++GDII    P        IL+VL+
Sbjct: 94  ANIDQSRVSILAPVGLAVLGLQVGDIIEWPLPNERLGKLRILEVLY 139


>gi|83716392|ref|YP_439713.1| nucleoside diphosphate kinase regulator [Burkholderia thailandensis
           E264]
 gi|257142852|ref|ZP_05591114.1| nucleoside diphosphate kinase regulator, putative [Burkholderia
           thailandensis E264]
 gi|83650217|gb|ABC34281.1| nucleoside diphosphate kinase regulator, putative [Burkholderia
           thailandensis E264]
          Length = 132

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 55/105 (52%), Gaps = 1/105 (0%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           +    N      L+ ++ RA++++   +  + +   + + L+++ +G    + IV    A
Sbjct: 18  KHAERNPHYQEMLDTLLERADIVEPDKIQANVVTMNSQIKLLDETAGQDMTWTIVYPDAA 77

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           + + G +++ SP+  AL+G   G+ + V  PGG   T +I+++++
Sbjct: 78  NFEHGWLNVFSPVGMALLGARRGERVKVTLPGGTDATLKIVEIVY 122


>gi|125975505|ref|YP_001039415.1| GreA/GreB family elongation factor [Clostridium thermocellum ATCC
           27405]
 gi|256004207|ref|ZP_05429190.1| GreA/GreB family elongation factor [Clostridium thermocellum DSM
           2360]
 gi|281419462|ref|ZP_06250476.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20]
 gi|125715730|gb|ABN54222.1| GreA/GreB family elongation factor [Clostridium thermocellum ATCC
           27405]
 gi|255991797|gb|EEU01896.1| GreA/GreB family elongation factor [Clostridium thermocellum DSM
           2360]
 gi|281406868|gb|EFB37132.1| GreA/GreB family elongation factor [Clostridium thermocellum JW20]
 gi|316939625|gb|ADU73659.1| transcription elongation factor GreA/GreB domain-containing protein
           [Clostridium thermocellum DSM 1313]
          Length = 160

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 3/129 (2%)

Query: 31  IKAISEARAYGDLSENAEY-QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFG 89
           +  I + R        AE  + +   Q   +  +  + + +    V    + +   +   
Sbjct: 18  VSEIEKERDMLLNEHYAEETKESINFQEFFKNYLDRINSYLNTVRVDKNGSEACPFVIIN 77

Query: 90  ATVSLVEKNSGDKKNYQIVGD--QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
           + V + +    +K  Y+IV    +E D      S  SP+ RAL+ K + D +SV  P G 
Sbjct: 78  SIVEVFDCEEEEKCKYRIVLPFSKEYDTSIDCASCLSPLGRALLFKNVNDNVSVQIPTGM 137

Query: 148 KTYEILQVL 156
             Y IL + 
Sbjct: 138 LHYTILDIT 146


>gi|113969979|ref|YP_733772.1| GreA/GreB family elongation factor [Shewanella sp. MR-4]
 gi|114047214|ref|YP_737764.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
 gi|113884663|gb|ABI38715.1| GreA/GreB family elongation factor [Shewanella sp. MR-4]
 gi|113888656|gb|ABI42707.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
          Length = 135

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RA+++  + M G+ +   + V     +S D    ++V  ++A    G +SI +P
Sbjct: 34  LEAELDRADIVPAAQMPGNVVTMNSEVKFSVSSSNDTFCLRLVYPKDA-TGEGTISILAP 92

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G   GD I    PGG      I ++++
Sbjct: 93  VGSALLGLSQGDEIEWPGPGGTMVKVRIEEIMY 125


>gi|118619988|ref|YP_908320.1| nucleoside diphosphate kinase regulator [Mycobacterium ulcerans
           Agy99]
 gi|118572098|gb|ABL06849.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
          Length = 161

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 1   MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M +++    +     D +  EL   +Q      I+  ++    GD  + AE     +   
Sbjct: 1   MSEEVQSPGLAEAARDNLAAELARLRQRHDRLEIEVKNDRGMIGDHGDAAEAIQRADELP 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
           +   R+ EL+  +  A   + +           T+   +          IV +     + 
Sbjct: 61  VLTERIHELDRRLK-AGPSNATGSETLPSGTEVTLRFDDGEVVTMHVIAIVEENPVGHEY 119

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             ++  SP+ +AL G++ GD ++ + P G    E+L + 
Sbjct: 120 ETLTAHSPLGQALAGRQAGDTVTYSTPRGPSQVELLSIK 158


>gi|37676834|ref|NP_937230.1| nucleoside diphosphate kinase regulator [Vibrio vulnificus YJ016]
 gi|37201378|dbj|BAC97200.1| transcription elongation factor [Vibrio vulnificus YJ016]
          Length = 135

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           E        + +LEN + RA V+    M  + +   +TV      S       +V   + 
Sbjct: 22  EKMANLSPELEKLENELDRANVLAPQQMPDNIVTMNSTVRFTFVGSDKVMEKTLVYPDQV 81

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
                 VSI +P+  AL+G  +G  ++   PGG E+T EIL+V +
Sbjct: 82  RNPDD-VSIFAPVGSALLGLSVGQQLTWPMPGGAERTIEILEVTY 125


>gi|126174724|ref|YP_001050873.1| GreA/GreB family elongation factor [Shewanella baltica OS155]
 gi|153001023|ref|YP_001366704.1| GreA/GreB family elongation factor [Shewanella baltica OS185]
 gi|160875736|ref|YP_001555052.1| GreA/GreB family elongation factor [Shewanella baltica OS195]
 gi|217973017|ref|YP_002357768.1| GreA/GreB family elongation factor [Shewanella baltica OS223]
 gi|304409101|ref|ZP_07390722.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
 gi|307303104|ref|ZP_07582859.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
 gi|125997929|gb|ABN62004.1| GreA/GreB family elongation factor [Shewanella baltica OS155]
 gi|151365641|gb|ABS08641.1| GreA/GreB family elongation factor [Shewanella baltica OS185]
 gi|160861258|gb|ABX49792.1| GreA/GreB family elongation factor [Shewanella baltica OS195]
 gi|217498152|gb|ACK46345.1| GreA/GreB family elongation factor [Shewanella baltica OS223]
 gi|304352922|gb|EFM17319.1| GreA/GreB family elongation factor [Shewanella baltica OS183]
 gi|306913464|gb|EFN43886.1| GreA/GreB family elongation factor [Shewanella baltica BA175]
 gi|315267925|gb|ADT94778.1| GreA/GreB family elongation factor [Shewanella baltica OS678]
          Length = 135

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RA+++  S M  + +   + V     +S +    ++V  ++ +  +G +SI +P
Sbjct: 34  LEAELDRADIVPASQMPANVVTMNSEVKFSVSSSNETFCLRLVYPKDVNG-AGTISILAP 92

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G   GD I    PGG      I ++L+
Sbjct: 93  VGSALLGLSQGDEIEWPGPGGSMVKVRIEEILY 125


>gi|27367044|ref|NP_762571.1| nucleoside diphosphate kinase regulator [Vibrio vulnificus CMCP6]
 gi|320158922|ref|YP_004191300.1| regulator of nucleoside diphosphate kinase [Vibrio vulnificus
           MO6-24/O]
 gi|27358612|gb|AAO07561.1| Regulator of nucleoside diphosphate kinase [Vibrio vulnificus
           CMCP6]
 gi|319934234|gb|ADV89097.1| regulator of nucleoside diphosphate kinase [Vibrio vulnificus
           MO6-24/O]
          Length = 135

 Score = 59.8 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           E        + +LEN + RA V+    M  + +   +TV      S       +V   + 
Sbjct: 22  EKMANLSPELEKLENELDRANVLAPQQMPDNIVTMNSTVRFTFVGSDKVMEKTLVYPDQV 81

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
                 VSI +P+  AL+G  +G  ++   PGG EKT EIL+V +
Sbjct: 82  RNPDD-VSIFAPVGSALLGLSVGQQLTWPMPGGAEKTIEILEVTY 125


>gi|255319745|ref|ZP_05360952.1| GreA/GreB family elongation factor [Acinetobacter radioresistens
           SK82]
 gi|262379537|ref|ZP_06072693.1| GreA/GreB family elongation factor [Acinetobacter radioresistens
           SH164]
 gi|255303199|gb|EET82409.1| GreA/GreB family elongation factor [Acinetobacter radioresistens
           SK82]
 gi|262298994|gb|EEY86907.1| GreA/GreB family elongation factor [Acinetobacter radioresistens
           SH164]
          Length = 134

 Score = 59.4 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 1/105 (0%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           E Q+     +  LE+ + RAEV++   +  + ++    V +    S +    Q+V   + 
Sbjct: 21  EHQSHMTQTIEHLEDELARAEVVEPHEIPANVVSMNTRVLITIAPSTEPTEIQLVYPHDF 80

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
               G V++ +PI  A++G   G  I    P G     +I +VL+
Sbjct: 81  RGDKGQVNVLAPIGAAILGLAEGQEIEWPQPDGHLMKVKIEKVLY 125


>gi|150398653|ref|YP_001329120.1| nucleoside diphosphate kinase regulator [Sinorhizobium medicae
           WSM419]
 gi|150030168|gb|ABR62285.1| GreA/GreB family elongation factor [Sinorhizobium medicae WSM419]
          Length = 135

 Score = 59.4 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%)

Query: 46  NAEYQA-----AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
           NA+  A     A    +        L   + RA +     +  D +  G+TV+    ++G
Sbjct: 16  NADDHARLTAIASSALDRIPEVAEALLLELDRARIAAPGKLPKDSVQMGSTVAFH-ADNG 74

Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155
             K  ++V   EAD+++G +S+ +PI  ALIG  +G  I  +   G+     I  V
Sbjct: 75  FAKEVRLVYPGEADIEAGKISVLTPIGAALIGLSVGQSIDWSDRAGKIHRMTIRSV 130


>gi|317494056|ref|ZP_07952472.1| prokaryotic transcription elongation factor [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316917829|gb|EFV39172.1| prokaryotic transcription elongation factor [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 136

 Score = 59.4 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L N + RAE++    M  D +   + V   + +S ++    +V        +  +S+ +P
Sbjct: 34  LNNELDRAEMLSPENMPADVVTMNSRVKFRDLSSKEEHVRTLVYPASLKDSAAELSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           I  AL+G  +GD I    P G     E+L++ +
Sbjct: 94  IGAALLGLRVGDAIQWELPNGQTTHIEVLELQY 126


>gi|311280477|ref|YP_003942708.1| GreA/GreB family elongation factor [Enterobacter cloacae SCF1]
 gi|308749672|gb|ADO49424.1| GreA/GreB family elongation factor [Enterobacter cloacae SCF1]
          Length = 136

 Score = 59.4 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA++    +M  D ++  + V   +  +G+++   +V   +    S  +S+ +P
Sbjct: 34  LNDELDRAQMCAPESMPHDVVSMNSKVRFRDLTTGEERVRTLVFPTQMTDSSTQLSVLAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +G  I    P G     E+L++L+
Sbjct: 94  VGAALLGLRVGSTIHWELPNGTATHLEVLELLY 126


>gi|117920161|ref|YP_869353.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3]
 gi|117612493|gb|ABK47947.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3]
          Length = 135

 Score = 59.4 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RA+++  + M G+ +   + V     +S D    ++V  ++A    G +SI +P
Sbjct: 34  LEAELDRADIVPAAQMPGNVVTMNSEVRFSVSSSQDTFCLRLVYPKDA-AGEGTISILAP 92

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G   GD I    PGG      I ++++
Sbjct: 93  VGSALLGLSQGDEIEWPGPGGSMVKVRIEEIVY 125


>gi|293394200|ref|ZP_06638500.1| transcriptional regulator (nucleoside diphosphate kinase) [Serratia
           odorifera DSM 4582]
 gi|291423178|gb|EFE96407.1| transcriptional regulator (nucleoside diphosphate kinase) [Serratia
           odorifera DSM 4582]
          Length = 221

 Score = 59.4 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  + +    +   + V   + ++ ++    +V   E    S  +S+ +P
Sbjct: 119 LNAELDRAEILPPAQIPAHVVTMNSRVRFRDLHTNEEHVRTLVYPAELQNSSEQLSVMAP 178

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G  +G  I    P GE+   E+L++L+
Sbjct: 179 LGAALLGMHVGKQIDWALPNGEQAQIEVLELLY 211


>gi|260597037|ref|YP_003209608.1| nucleoside diphosphate kinase regulator [Cronobacter turicensis
           z3032]
 gi|260216214|emb|CBA29098.1| Regulator of nucleoside diphosphate kinase [Cronobacter turicensis
           z3032]
          Length = 136

 Score = 59.4 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA ++    M  D +   + V   +  SG+     +V  Q A      +S+ +P
Sbjct: 34  LNDELDRARMVSPQAMPEDVVTMNSRVKFRDLASGETYERLLVYPQNAGNSPEALSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +GD I    P G E   E+L++L+
Sbjct: 94  VGAALLGLRVGDAIRWPLPDGSETHIEVLELLY 126


>gi|288962542|ref|YP_003452837.1| regulator of nucleoside diphosphate kinase [Azospirillum sp. B510]
 gi|288914808|dbj|BAI76293.1| regulator of nucleoside diphosphate kinase [Azospirillum sp. B510]
          Length = 166

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 1/94 (1%)

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           A L   + RA VI+   ++   +  GA V+  ++ +G ++   +V  ++AD+ +  VS+ 
Sbjct: 62  AYLTVELERAAVIEEGELATGVVTMGARVAFRDEVTGQERTVTLVYPRDADLAACRVSVL 121

Query: 124 SPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
           +PI  ALIG   G  I+     GE     +L V 
Sbjct: 122 TPIGAALIGVAEGQSITWYTREGEAKILTVLAVE 155


>gi|104784263|ref|YP_610761.1| nucleoside diphosphate kinase regulator [Pseudomonas entomophila
           L48]
 gi|95113250|emb|CAK17978.1| regulator of nucleoside diphosphate kinase [Pseudomonas entomophila
           L48]
          Length = 136

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E  SG   +  +V  ++A    G VSI +PI  AL+G  +GD I   AP
Sbjct: 54  VVTMNSRVHCREIASGKDYHLTLVYPKDAGP-EGNVSILAPIGCALLGLSVGDQIDWPAP 112

Query: 145 GGEK-TYEILQVLW 157
           GG+    E+L V +
Sbjct: 113 GGKTLKLELLAVEY 126


>gi|330501242|ref|YP_004378111.1| nucleoside diphosphate kinase regulator [Pseudomonas mendocina
           NK-01]
 gi|328915528|gb|AEB56359.1| nucleoside diphosphate kinase regulator [Pseudomonas mendocina
           NK-01]
          Length = 135

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  + RAEV+    +    +   + V   E++SG   +  +V  Q+A    G VSI +P
Sbjct: 34  LQAELDRAEVVGHDEVPAGVVTMNSRVHCREESSGKDYHLTLVYPQDA-GGDGKVSILAP 92

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G  +G  I    PGG++    +L+V +
Sbjct: 93  VGSALLGLSVGQHIDWPVPGGKQLKLTLLEVEY 125


>gi|167036270|ref|YP_001671501.1| nucleoside diphosphate kinase regulator [Pseudomonas putida GB-1]
 gi|166862758|gb|ABZ01166.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1]
          Length = 136

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   +  +V  ++A    G VSI +PI  AL+G  +G+ I   AP
Sbjct: 54  VVTMNSRVHCREEASGKDYHLTLVYPKDAGP-EGKVSILAPIGCALLGLSVGEQIDWPAP 112

Query: 145 GGEK-TYEILQVLW 157
           GG+    ++L+V +
Sbjct: 113 GGKTLKLKLLEVEY 126


>gi|310822870|ref|YP_003955228.1| transcription elongation factor [Stigmatella aurantiaca DW4/3-1]
 gi|309395942|gb|ADO73401.1| Transcription elongation factor [Stigmatella aurantiaca DW4/3-1]
          Length = 144

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 1/106 (0%)

Query: 53  KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
           + L+        +LE  + RA V+    +  D +   + V   + ++G ++   +V  +E
Sbjct: 29  RHLEGTKAAAAEQLELELDRARVVRQEQIPPDIVTMRSRVLFEDLDTGRRREASLVYPEE 88

Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           A++    VSI +P+  A++G ++GDII    P        IL+VL+
Sbjct: 89  ANIDQSRVSILAPVGLAVLGLQVGDIIEWPLPNERLGKLRILEVLY 134


>gi|332995744|gb|AEF05799.1| transcription elongation factor GreB [Alteromonas sp. SN2]
          Length = 56

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 29/49 (59%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ 50
          +    +T KG+ K++QEL    + ERP   + ++ A + GD SENA++ 
Sbjct: 1  MKTPLITRKGYLKLKQELDHLWRVERPETTRKVTWAASLGDRSENADFH 49


>gi|212711074|ref|ZP_03319202.1| hypothetical protein PROVALCAL_02143 [Providencia alcalifaciens DSM
           30120]
 gi|212686242|gb|EEB45770.1| hypothetical protein PROVALCAL_02143 [Providencia alcalifaciens DSM
           30120]
          Length = 136

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 46  NAEYQAAKELQNLNEGR--MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK 103
           +AE   A   Q    G      L + + RA+++    +  D +   +TV  ++  S +++
Sbjct: 12  DAERLDALMEQAAYAGTPVAEALNDELDRADIVSPQEIPADVVTMNSTVRFLDLISNEER 71

Query: 104 NYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
              +V        +  +S+ +PI  AL+G  + D IS   P G E    +L++++
Sbjct: 72  TRTLVYPASLKDSAEQLSVMAPIGAALLGLHVNDEISWALPNGVETRVRVLEIVY 126


>gi|13473408|ref|NP_104975.1| nucleoside diphosphate kinase regulator [Mesorhizobium loti
           MAFF303099]
 gi|14024157|dbj|BAB50761.1| nucleoside diphosphate kinase regulator [Mesorhizobium loti
           MAFF303099]
          Length = 140

 Score = 59.4 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 2/116 (1%)

Query: 41  GDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
            D   +     A+ L +       EL   + RA V D + M  D +  G+ V++     G
Sbjct: 16  SDTDHDRLTGLARALLDRAPETAEELLFEMDRAVVTDAAAMPADVVRMGSAVTVR-GEGG 74

Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQV 155
             +   +V   EAD+    +S+ +P+  ALIG  +G  +  ++ GG E +  +  V
Sbjct: 75  ATQRIMLVYPGEADIAENRISVLTPMGTALIGASIGQAVCWSSRGGRELSVTVEAV 130


>gi|315500720|ref|YP_004089521.1| GreA/GreB family elongation factor [Asticcacaulis excentricus CB
           48]
 gi|315418732|gb|ADU15370.1| GreA/GreB family elongation factor [Asticcacaulis excentricus CB
           48]
          Length = 159

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/152 (21%), Positives = 63/152 (41%), Gaps = 20/152 (13%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT +G  +++                +   A      S+       +         + 
Sbjct: 28  NLVTPEGLAELE------------AAFASAKAAYQAAQSSDTVSQD--RTAMARATRDLR 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+ +     + +++ FG TV +  ++ G  + ++IVG+ EA+ + G +S  S
Sbjct: 74  YYTARLGSAQPVAP-VANANKVVFGCTVEIA-RDDGRVQTFKIVGEDEANPKVGKISYVS 131

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P+ARAL+G+E GD   +    G  + EIL V 
Sbjct: 132 PLARALLGREAGDETQI---SGA-SVEILTVK 159


>gi|253991158|ref|YP_003042514.1| nucleoside diphosphate kinase regulator [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782608|emb|CAQ85772.1| regulator of nucleoside diphosphate kinase [Photorhabdus
           asymbiotica]
          Length = 136

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  + +  D +   + V  ++  S +++   +V        S  +S+ +P
Sbjct: 34  LNEELDRAEIVPPAEIPSDVVTMNSRVRFLDLTSSEERVRTLVYPASLQDSSNQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +GD IS   P G E   ++L++L+
Sbjct: 94  LGAALLGLRIGDEISWKLPNGEETRVKVLELLY 126


>gi|239833979|ref|ZP_04682307.1| nucleoside diphosphate kinase regulator [Ochrobactrum intermedium
           LMG 3301]
 gi|239822042|gb|EEQ93611.1| nucleoside diphosphate kinase regulator [Ochrobactrum intermedium
           LMG 3301]
          Length = 142

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 49/105 (46%), Gaps = 2/105 (1%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A  +    E    EL   + RA+V+    +  D I  G+TV     N G ++   +V   
Sbjct: 25  ATNVSERLEEIAEELMAELDRAKVVPAKRLPQDVIHMGSTVEFR-SNDGQQRRVALVYPG 83

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
           EAD+  G +SI +PI  ALIG   G  IS  A  G++    +L V
Sbjct: 84  EADIAQGKISILTPIGTALIGLAPGQSISWTARDGKQHELNVLSV 128


>gi|332290966|ref|YP_004429575.1| GreA/GreB family elongation factor [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169052|gb|AEE18307.1| GreA/GreB family elongation factor [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 139

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           +  +  L N +  A ++D   M  + I F + V++   + G +K  Q+V   + DV    
Sbjct: 32  QKSLQRLSNELKSAHIVDDCDMPLNVIRFNSKVTVS-SDRGWEKTLQVVAPADKDVALSK 90

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           VS+ +P+  A+ G + G II+   P G +   I +V
Sbjct: 91  VSVLTPMGSAIFGNKEGAIINWMFPSGMQELTITKV 126


>gi|295677010|ref|YP_003605534.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
 gi|295436853|gb|ADG16023.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1002]
          Length = 134

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 1/96 (1%)

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
              L++++ RA ++D   +  D +   +  +L++  SG++  + +V    AD   G +++
Sbjct: 29  QHMLDDVLERAVIVDSHDIPADVVTMNSQATLIDTASGEQMTWTVVYPPNADFAQGRLNV 88

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
            SP   AL+G   G+ I    P G++   +I ++L+
Sbjct: 89  FSPAGLALLGARRGESIRFTPPSGDQQVLKIDKILY 124


>gi|183597965|ref|ZP_02959458.1| hypothetical protein PROSTU_01315 [Providencia stuartii ATCC 25827]
 gi|188022738|gb|EDU60778.1| hypothetical protein PROSTU_01315 [Providencia stuartii ATCC 25827]
          Length = 136

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA+++    +  D +   +TV  ++  S +++   +V        +  +S+ +P
Sbjct: 34  LNDELDRADILSPQEIPADVVTMNSTVRFLDLISNEERTRTLVYPASLKDSAEQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           I  AL+G  + D IS   P G E    +L++++
Sbjct: 94  IGAALLGLHVNDEISWALPNGVETRVRVLEIIY 126


>gi|120435083|ref|YP_860769.1| transcription elongation factor [Gramella forsetii KT0803]
 gi|117577233|emb|CAL65702.1| transcription elongation factor [Gramella forsetii KT0803]
          Length = 146

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%)

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            +  + +L   +  A ++  S M  D I   + V++ E     ++ YQIV  ++ D++  
Sbjct: 31  YKASIYKLNEELKDARILTNSEMPLDVIRLNSLVTI-ETPYAVERTYQIVTPEKGDIRKN 89

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
            +S+ +P+  AL G   GD I+   P GE   +I +V  I
Sbjct: 90  KISVLAPMGLALFGYAQGDNITWTFPLGESYIKIKEVKQI 129


>gi|325286071|ref|YP_004261861.1| GreA/GreB family elongation factor [Cellulophaga lytica DSM 7489]
 gi|324321525|gb|ADY28990.1| GreA/GreB family elongation factor [Cellulophaga lytica DSM 7489]
          Length = 139

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 57  NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
              +  +A+L N +  A V D   M  D I F + V++   + G +K++Q+V   ++D++
Sbjct: 29  ATYKKSIAKLNNELKTAAVKDEKDMPTDVIRFNSIVTVT-ADEGWQKSFQLVKPSDSDLK 87

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL----WI 158
           +  +SI +P+  A+IG   GD +    P GEKT  +  V     +I
Sbjct: 88  NKKLSILTPMGTAVIGYAKGDKLLWEFPAGEKTLTVNNVEQKNNYI 133


>gi|206580755|ref|YP_002239725.1| regulator of nucleoside diphosphate kinase [Klebsiella pneumoniae
           342]
 gi|288936567|ref|YP_003440626.1| GreA/GreB family elongation factor [Klebsiella variicola At-22]
 gi|290510377|ref|ZP_06549747.1| nucleoside diphosphate kinase regulator [Klebsiella sp. 1_1_55]
 gi|206569813|gb|ACI11589.1| regulator of nucleoside diphosphate kinase [Klebsiella pneumoniae
           342]
 gi|288891276|gb|ADC59594.1| GreA/GreB family elongation factor [Klebsiella variicola At-22]
 gi|289777093|gb|EFD85091.1| nucleoside diphosphate kinase regulator [Klebsiella sp. 1_1_55]
          Length = 136

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA+++    M  D +   + V   +  SG+++   +V   +    +  +S+ +P
Sbjct: 34  LNDELDRAQMLAPEAMPHDVVTMNSKVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G ++G  I    PGG     E+L++L+
Sbjct: 94  VGAALLGLKVGSTIHWELPGGASTHLEVLELLY 126


>gi|254419345|ref|ZP_05033069.1| Prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Brevundimonas sp. BAL3]
 gi|196185522|gb|EDX80498.1| Prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Brevundimonas sp. BAL3]
          Length = 163

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 47  AEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ 106
              ++ +         +         A++ + +   G     G+    +E+  G  + ++
Sbjct: 60  GSIESDRTAMARATRDLRYWSARRASAQLQEPTADDGGVRFGGS--VSIEREDGRTQTWR 117

Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           IVG+ EAD   G VS  SP+ARAL+GK +GD   V    G ++ EI  V
Sbjct: 118 IVGEDEADPAKGSVSHVSPLARALLGKRIGDEAVV---AG-QSVEITAV 162


>gi|187929940|ref|YP_001900427.1| GreA/GreB family elongation factor [Ralstonia pickettii 12J]
 gi|187726830|gb|ACD27995.1| GreA/GreB family elongation factor [Ralstonia pickettii 12J]
          Length = 135

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 1/81 (1%)

Query: 78  ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
            S      +    +V  V  ++G ++ + +V  +EA+V S  +S+ SP+  AL+G   G 
Sbjct: 45  PSNKIPADVVTMNSVVCVVDDAGAEQKWTLVYPEEANVASAKLSVLSPMGAALLGARAGK 104

Query: 138 IISVNAPGG-EKTYEILQVLW 157
            +  +AP G +++  I +V +
Sbjct: 105 SVKYSAPNGAQRSLRIDRVAF 125


>gi|329888405|ref|ZP_08267003.1| regulator of nucleoside diphosphate kinase [Brevundimonas diminuta
           ATCC 11568]
 gi|328846961|gb|EGF96523.1| regulator of nucleoside diphosphate kinase [Brevundimonas diminuta
           ATCC 11568]
          Length = 136

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  + RA+V +   M  + +     +  V+ +S + +  Q+V  ++AD+ +G VSI S 
Sbjct: 38  LQQELDRAKVCEPKAMPKNVVTLNRWLQYVDDHSPEVRRVQLVLPKDADIDAGRVSILSY 97

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           +   LIG + G  I+     G  +   +++V 
Sbjct: 98  VGAGLIGLKEGQSINWPDTSGAARKLTLVKVE 129


>gi|226329344|ref|ZP_03804862.1| hypothetical protein PROPEN_03249 [Proteus penneri ATCC 35198]
 gi|225202530|gb|EEG84884.1| hypothetical protein PROPEN_03249 [Proteus penneri ATCC 35198]
          Length = 136

 Score = 58.6 bits (140), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA+++  + +  + +   + V  ++  + +++   +V        +  +S+ +P
Sbjct: 34  LNEELDRADIVTPADIPANIVTMNSKVRFMDLKNNEERTRTLVYPASLKDSATELSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  + D IS   P G E   ++L++L+
Sbjct: 94  MGAALLGLAIDDEISWKLPNGLETKVKVLEILY 126


>gi|319780959|ref|YP_004140435.1| transcription elongation factor GreA/GreB domain-containing protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317166847|gb|ADV10385.1| transcription elongation factor GreA/GreB domain-containing protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 140

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 4/106 (3%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A+   +       EL + + RA V   ++M  + +  G+ V++     G+ +   +V   
Sbjct: 27  ARASLDRVPETAEELLSEMDRAVVTAAASMPANVVRMGSAVTIRNDG-GNIQRVTLVYPG 85

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK---TYEILQ 154
           EAD+    +S+ +P+  ALIG   G  +  ++ GG +   T E++ 
Sbjct: 86  EADISENRISVLTPMGTALIGATAGQTVCWSSRGGRELSATIEVVD 131


>gi|300114334|ref|YP_003760909.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113]
 gi|299540271|gb|ADJ28588.1| GreA/GreB family elongation factor [Nitrosococcus watsonii C-113]
          Length = 129

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA VI    +    +   + +  +++N+G+++  ++V  +EA++++G +S+ +P
Sbjct: 26  LAEELDRATVIPRERVPDRVVTMHSRLIYLDENTGERREVELVYPEEANMRAGKISVLAP 85

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +G+ I    P GE +   + ++L+
Sbjct: 86  VGSALLGLSVGESIDWKFPSGEVRRLSVERILF 118


>gi|89068497|ref|ZP_01155894.1| putative nucleoside diphosphate kinase regulator [Oceanicola
           granulosus HTCC2516]
 gi|89045916|gb|EAR51976.1| putative nucleoside diphosphate kinase regulator [Oceanicola
           granulosus HTCC2516]
          Length = 150

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 1/92 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA ++  + +  + +A G  V+  ++ +G  K+   V  ++AD+  G +S+ +P
Sbjct: 49  LLGELGRARIVPPARLPANVVAIGRAVTYRDETTGLAKSVVPVFPEDADIARGRISVLTP 108

Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVL 156
           I  ALIG   G  I      G +    +L V 
Sbjct: 109 IGVALIGLAEGAAIPWETRDGSRRVLSVLSVT 140


>gi|90422718|ref|YP_531088.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           BisB18]
 gi|90104732|gb|ABD86769.1| GreA/GreB family elongation factor [Rhodopseudomonas palustris
           BisB18]
          Length = 154

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 28/151 (18%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           VT +G  +I+Q                     A+    E      A + Q+       EL
Sbjct: 29  VTPEGMAQIEQ---------------------AFDASREALAAAQAADDQDAITAAAREL 67

Query: 67  ENIITRAEVIDISTM--SGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                R     I+       ++ FG+TV++  +N   ++ ++IVG+ EAD  +G +S   
Sbjct: 68  RYWSARRATARIARPIGDVTKVRFGSTVTIR-RNDDRRQTFRIVGEDEADPPNGTISHVL 126

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQV 155
           P+AR+L GK +GD++      G    EI +V
Sbjct: 127 PLARSLFGKRVGDVVR----AGTGEAEIEEV 153


>gi|258516280|ref|YP_003192502.1| GreA/GreB family elongation factor [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257779985|gb|ACV63879.1| GreA/GreB family elongation factor [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 135

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 2/104 (1%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           E    ++  + +LEN + RA ++D   +  D I   +   L   +   + +  +V  ++A
Sbjct: 24  EGNQASDKSVKKLENELYRAIIVDSQQVPRDVITMNSKALLQLNDEDIEVS--LVYPEDA 81

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           D+ +  +SI SPI  A++G + G+ I    P G     I ++L+
Sbjct: 82  DLGAMKLSIFSPIGTAILGYKEGNTIEWEVPSGTSKIHIKKILY 125


>gi|309781359|ref|ZP_07676095.1| regulator of nucleoside diphosphate kinase [Ralstonia sp.
           5_7_47FAA]
 gi|308919772|gb|EFP65433.1| regulator of nucleoside diphosphate kinase [Ralstonia sp.
           5_7_47FAA]
          Length = 135

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 78  ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
                   +    +V  V  ++G ++ + +V  +EA+V S  +S+ SP+  AL+G   G 
Sbjct: 45  PGNKIPADVVTMNSVVCVVDDTGAEQEWTLVYPEEANVASAKLSVLSPMGAALLGARAGK 104

Query: 138 IISVNAPGG-EKTYEILQVLW 157
            +  +AP G +++  I +V +
Sbjct: 105 SVKYSAPNGAQRSLRIDRVAF 125


>gi|325271635|ref|ZP_08138137.1| nucleoside diphosphate kinase regulator [Pseudomonas sp. TJI-51]
 gi|324103239|gb|EGC00584.1| nucleoside diphosphate kinase regulator [Pseudomonas sp. TJI-51]
          Length = 136

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
           A+V+    +    +   + V   E+ SG   +  +V  ++A    G VS+ +PI  AL+G
Sbjct: 42  AQVVGHEEVPAGVVTMNSRVHCREEASGKDYHLTLVYPKDA-GAEGKVSVLAPIGCALLG 100

Query: 133 KELGDIISVNAPGGEK-TYEILQVLW 157
             +G+ I   APGG+    ++L+V +
Sbjct: 101 LSVGEQIDWPAPGGKTLKLKLLEVEY 126


>gi|260901477|ref|ZP_05909872.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
           AQ4037]
 gi|308107692|gb|EFO45232.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
           AQ4037]
          Length = 135

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE  + RA V++   M  + +   +TV              +V   E       +SI +
Sbjct: 33  ELEAELDRATVLEPEEMPSNVVTMNSTVEFKFSGEERTMTKTLVYPSELKSSDD-ISIFA 91

Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           P+  ALIG  +G  +    P    KT EI+ + +
Sbjct: 92  PVGSALIGLSVGQKLDWPMPNKQVKTIEIVDITY 125


>gi|77165386|ref|YP_343911.1| transcription elongation factor [Nitrosococcus oceani ATCC 19707]
 gi|254434724|ref|ZP_05048232.1| hypothetical protein NOC27_1655 [Nitrosococcus oceani AFC27]
 gi|76883700|gb|ABA58381.1| transcription elongation factor [Nitrosococcus oceani ATCC 19707]
 gi|207091057|gb|EDZ68328.1| hypothetical protein NOC27_1655 [Nitrosococcus oceani AFC27]
          Length = 129

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA VI    +    +   + +  +++N+G+++  ++V  +EA+ ++G +S+ +P
Sbjct: 26  LAEELDRATVIPQERVPDRVVTMHSRLIYLDENTGERREVELVYPEEANTRAGKISVLAP 85

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G  +G+ I    P GE +   + Q+L+
Sbjct: 86  VGSALLGLSVGESIDWKFPSGEVRRLSVEQILF 118


>gi|313676808|ref|YP_004054804.1| grea/greb family elongation factor [Marivirga tractuosa DSM 4126]
 gi|312943506|gb|ADR22696.1| GreA/GreB family elongation factor [Marivirga tractuosa DSM 4126]
          Length = 149

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 1/98 (1%)

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
            NE  + +L N ++ A V   + M  D I  G+ V  VE   G + N  +V   E ++  
Sbjct: 51  QNEAWIIKLTNELSNAIVKRENEMPVDVIKIGSKV-DVETPYGRRNNIILVKPTEKNINE 109

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             +S+ SP+  ALIG   GD +  + P G+ T +IL V
Sbjct: 110 NKISLLSPMGSALIGYAKGDEVDWDLPKGKSTIKILNV 147


>gi|261323143|ref|ZP_05962340.1| nucleoside diphosphate kinase regulator [Brucella neotomae 5K33]
 gi|261299123|gb|EEY02620.1| nucleoside diphosphate kinase regulator [Brucella neotomae 5K33]
          Length = 111

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%)

Query: 86  IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
           +  G+TV     N G ++   +V   EAD+    +SI +PI  ALIG   G  IS  A  
Sbjct: 1   MQMGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILTPIGTALIGLAPGQSISWTARD 59

Query: 146 GEK-TYEILQV 155
           G++    +L+V
Sbjct: 60  GKQHELNVLKV 70


>gi|254822184|ref|ZP_05227185.1| transcription elongation factor GreA [Mycobacterium intracellulare
           ATCC 13950]
          Length = 155

 Score = 58.3 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 51/148 (34%), Gaps = 16/148 (10%)

Query: 1   MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M    P  ++ + ++++Q+EL   +          + +  A G  +++        +Q  
Sbjct: 1   MTSTQPAWISPQAYERLQRELATLR---------ELCDTNAVGSANDDNSI----AVQRA 47

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            + R+  +  ++  A V +     G            +     +     V   E      
Sbjct: 48  WQVRIRRIHELLVDAVVGEDPPDDGIAEPGMVLTIRYDDTGEVETFLFSVRGAE-YGGME 106

Query: 119 LVSISSPIARALIGKELGDIISVNAPGG 146
           + SI SP+  A+ G   G+  +   P G
Sbjct: 107 VYSIRSPLGAAIAGARPGEQRTYTLPSG 134


>gi|37527898|ref|NP_931243.1| nucleoside diphosphate kinase regulator [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787334|emb|CAE16418.1| Regulator of nucleoside diphosphate kinase [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 136

 Score = 58.3 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  + +  D +   + V  ++  S +++   +V        S  +S+ +P
Sbjct: 34  LNEELDRAEIVPPAEIPSDVVTMNSRVRFIDLTSNEERVRTLVYPASLQDSSDQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +GD IS   P G E   ++L++L+
Sbjct: 94  LGAALLGLRIGDEISWELPNGEETRVKVLELLY 126


>gi|28900843|ref|NP_800498.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260362544|ref|ZP_05775464.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
           K5030]
 gi|260896745|ref|ZP_05905241.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
           Peru-466]
 gi|28809289|dbj|BAC62331.1| regulator of nucleoside diphosphate kinase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308087377|gb|EFO37072.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
           Peru-466]
 gi|308115247|gb|EFO52787.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
           K5030]
          Length = 135

 Score = 58.3 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE  + RA V++   M  + +   +TV              +V   E       +SI +
Sbjct: 33  ELEAELDRATVLEPEEMPSNVVTMNSTVEFKFAGEERTMTKTLVYPSELKSSDD-ISIFA 91

Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           P+  ALIG  +G  +    P    KT EI+ + +
Sbjct: 92  PVGSALIGLSVGQKLDWPMPNKQVKTIEIVDITY 125


>gi|297581555|ref|ZP_06943478.1| transcription elongation factor GreB [Vibrio cholerae RC385]
 gi|297534393|gb|EFH73231.1| transcription elongation factor GreB [Vibrio cholerae RC385]
          Length = 47

 Score = 58.3 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 31/47 (65%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
          +    +T  G++K++QEL +  +E+RP I + +S A + GD SENA+
Sbjct: 1  MKTKLITRAGYNKLKQELDYLWKEQRPEITQKVSWAASLGDRSENAD 47


>gi|153836903|ref|ZP_01989570.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
           AQ3810]
 gi|149749861|gb|EDM60606.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
           AQ3810]
          Length = 135

 Score = 58.3 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE  + RA V++   M  + +   +TV              +V   E       +SI +
Sbjct: 33  ELEAELDRATVLEPEEMPSNVVTMNSTVEFKFAGEERTMTKTLVYPSELKSSDD-ISIFA 91

Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           P+  ALIG  +G  +    P    KT EI+ + +
Sbjct: 92  PVGSALIGLSVGQKLDWPMPNKQVKTIEIVDITY 125


>gi|85715886|ref|ZP_01046864.1| transcription elongation factor GreA/GreB region [Nitrobacter sp.
           Nb-311A]
 gi|85697293|gb|EAQ35173.1| transcription elongation factor GreA/GreB region [Nitrobacter sp.
           Nb-311A]
          Length = 150

 Score = 58.3 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 86  IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP- 144
           +   + V+ V+  SG+K+   +V  ++ADV +G +SI SPI  ALIG   G  I    P 
Sbjct: 70  VTMQSEVTFVDDISGEKRKVVLVYPEDADVDAGKISILSPIGAALIGLSTGQSIEFQTPS 129

Query: 145 GGEKTYEILQV 155
           GG ++  ++ V
Sbjct: 130 GGWRSLTVMAV 140


>gi|238893687|ref|YP_002918421.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546003|dbj|BAH62354.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 136

 Score = 58.3 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA+++    M  D +   + V   +  SG+++   +V   +    +  +S+ +P
Sbjct: 34  LNEELDRAQMLAPEAMPHDVVTMNSRVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G ++G  I    PGG     E+L++L+
Sbjct: 94  VGAALLGLKVGSTIHWELPGGASTHLEVLELLY 126


>gi|328470747|gb|EGF41658.1| nucleoside diphosphate kinase regulator [Vibrio parahaemolyticus
           10329]
          Length = 135

 Score = 58.3 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE  + RA +++   M  + +   +TV              +V   E       +SI +
Sbjct: 33  ELEAELDRATILEPEEMPSNVVTMNSTVEFKFAGEERTMTKTLVYPSELKSSDD-ISIFA 91

Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           P+  ALIG  +G  +    P    KT EI+ + +
Sbjct: 92  PVGSALIGLSVGQKLDWPMPNKQVKTIEIVDITY 125


>gi|167565571|ref|ZP_02358487.1| regulator of nucleoside diphosphate kinase [Burkholderia
           oklahomensis EO147]
          Length = 132

 Score = 58.3 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 55/105 (52%), Gaps = 1/105 (0%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
                N      L+ ++ RA++++ + +  + +   + + L+++ +G    + IV    A
Sbjct: 18  RHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLIDETAGQDMTWTIVYPDAA 77

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           + + G +++ SP+  AL+G   G+ + V  PGG + T +I ++++
Sbjct: 78  NFEQGRLNVFSPVGMALLGARCGEQVKVTLPGGADATLKIAEIVY 122


>gi|26991899|ref|NP_747324.1| nucleoside diphosphate kinase regulator [Pseudomonas putida KT2440]
 gi|148550332|ref|YP_001270434.1| nucleoside diphosphate kinase regulator [Pseudomonas putida F1]
 gi|24987021|gb|AAN70788.1|AE016722_9 nucleoside diphosphate kinase regulator [Pseudomonas putida KT2440]
 gi|148514390|gb|ABQ81250.1| GreA/GreB family elongation factor [Pseudomonas putida F1]
 gi|313501200|gb|ADR62566.1| Rnk [Pseudomonas putida BIRD-1]
          Length = 136

 Score = 58.3 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   +  +V  ++A    G VSI +PI  AL+G  +G+ I   AP
Sbjct: 54  VVTMNSRVHCREEASGKDYHLTLVYPKDAGP-EGKVSILAPIGCALLGLSVGEQIDWPAP 112

Query: 145 GGEK-TYEILQVLW 157
           GG+    ++L+V +
Sbjct: 113 GGKTLKLKLLEVEY 126


>gi|118463685|ref|YP_881203.1| transcription elongation factor GreA [Mycobacterium avium 104]
 gi|118164972|gb|ABK65869.1| transcription elongation factor GreA [Mycobacterium avium 104]
          Length = 155

 Score = 57.9 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 55/157 (35%), Gaps = 17/157 (10%)

Query: 1   MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M    P  ++ +  +++Q+EL   +          + +  A G  ++         +Q  
Sbjct: 1   MTSTQPAWISPQAHERLQRELATLR---------ELRDTSAVGSATDENSL----AVQRA 47

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            + R+  + +++  A V D     G            +     +     V   E D    
Sbjct: 48  WQLRIHRIHDLLVNAVVGDDPPDDGVAEPGMVLTIRYDDTGEIETFLLSVRGAEYDGTE- 106

Query: 119 LVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQ 154
           + SI SP+  A+ G   G+  S   P G   T  +L+
Sbjct: 107 VYSIRSPLGAAIAGARPGEQRSYILPNGAPLTVTLLK 143


>gi|229523094|ref|ZP_04412506.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TM
           11079-80]
 gi|229339944|gb|EEO04954.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TM
           11079-80]
          Length = 135

 Score = 57.9 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
            RA V++ + M  + +   +TV      S +     +V   +    +  VSI +P+  AL
Sbjct: 39  DRATVLEPAEMPDNVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97

Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
           +G  +G  ++   PGG  KT EI+ +++
Sbjct: 98  LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125


>gi|153006096|ref|YP_001380421.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
 gi|152029669|gb|ABS27437.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
          Length = 164

 Score = 57.9 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 26/157 (16%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            D++ +T +   +++  L           +++++ A A G                  E 
Sbjct: 23  TDRLLLTEQDAARLRATLAR-------ASLESMASADARG------------------EN 57

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            +  L   +  A V+    +  + +   + + L +  SG ++   +V  +E     G VS
Sbjct: 58  AVELLATALRSAIVVPPDRIPAEVVTMRSRLVLEDVASGARREVVLVYPEEERTHEGHVS 117

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
           + SP+  AL+G   G ++    P G     ++  V +
Sbjct: 118 VLSPVGVALLGLSEGALVGWPLPSGRTAVLQVESVQY 154


>gi|294634651|ref|ZP_06713184.1| regulator of nucleoside diphosphate kinase [Edwardsiella tarda ATCC
           23685]
 gi|291091897|gb|EFE24458.1| regulator of nucleoside diphosphate kinase [Edwardsiella tarda ATCC
           23685]
          Length = 140

 Score = 57.9 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 9/132 (6%)

Query: 27  RPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRI 86
           RP II    +A     L E  E+      Q LNE            A+++    M  D +
Sbjct: 7   RPAIIINELDAERLDRLLERPEFANQPIAQALNEELDR--------AQLLAPEAMPTDVV 58

Query: 87  AFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
              + V   + +S ++    ++     +     +S+ +PI  AL+G  +GD I  + P G
Sbjct: 59  TMNSRVRFRDLSSNEEHVRTLIYPHLPNDAEDGLSVMAPIGAALLGLHVGDAIRWHLPNG 118

Query: 147 EKT-YEILQVLW 157
            +T  E+L +L+
Sbjct: 119 SQTHIEVLALLY 130


>gi|262369473|ref|ZP_06062801.1| transcription elongation factor GreB [Acinetobacter johnsonii
          SH046]
 gi|262315541|gb|EEY96580.1| transcription elongation factor GreB [Acinetobacter johnsonii
          SH046]
          Length = 50

 Score = 57.9 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 29/49 (59%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ 50
          +    +T  G DK+  EL+    EERP I K ++ A + GD SENA+YQ
Sbjct: 1  MKSNLITRAGHDKLVAELKQLWHEERPEITKKVNWAASLGDRSENADYQ 49


>gi|254774710|ref|ZP_05216226.1| transcription elongation factor GreA [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 155

 Score = 57.9 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 52/149 (34%), Gaps = 16/149 (10%)

Query: 1   MVDKIP--VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M    P  ++ + ++++Q+EL   +          + +  A G  S N E   A  +Q  
Sbjct: 1   MTSTQPAWISPQAYERLQRELATLR---------ELCDTNAVG--SANDENSIA--VQRA 47

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
            + R+  +  ++  A V +     G            +     +     V   E      
Sbjct: 48  WQVRIRRIHELLVDAVVGEDPPDDGIAEPGMVLTIRYDDTGEVETFLFSVRGAE-YGGME 106

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGE 147
           + SI SP+  A+ G   G+  +   P G 
Sbjct: 107 VYSIRSPLGAAIAGARPGEQRTYTLPSGV 135


>gi|254417960|ref|ZP_05031684.1| hypothetical protein BBAL3_270 [Brevundimonas sp. BAL3]
 gi|196184137|gb|EDX79113.1| hypothetical protein BBAL3_270 [Brevundimonas sp. BAL3]
          Length = 141

 Score = 57.9 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 43/119 (36%), Gaps = 7/119 (5%)

Query: 28  PRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA 87
           P        AR +  LS       A       EG    L+  + RA + +          
Sbjct: 11  PSRPDIFLSARDHQTLSRLVGDMPA-------EGVAGLLQEELERAVICEPGDRPRGAAP 63

Query: 88  FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
               +  V+  S   +  QIV   EAD+ +G VS+ S +   LIG   G  I+   P G
Sbjct: 64  LHRWLHYVDGRSPQPRRIQIVLPNEADIDAGKVSVLSYVGAGLIGLVEGHTIAWTDPSG 122


>gi|299065804|emb|CBJ36982.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
           CMR15]
          Length = 138

 Score = 57.9 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 78  ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
                   +    +V  V   +G  + + +V   EA++ +  +S+ SP+  AL+G  +GD
Sbjct: 48  PGDRIPADVVTMNSVVRVHAGAGTAQAWTLVYPDEANLAAARLSVLSPMGAALLGGRVGD 107

Query: 138 IISVNAPGGEKT-YEILQVLW 157
            +   AP G      I  +++
Sbjct: 108 EVHYAAPDGSTHALRIDAIVF 128


>gi|146300052|ref|YP_001194643.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae
           UW101]
 gi|146154470|gb|ABQ05324.1| GreA/GreB family elongation factor [Flavobacterium johnsoniae
           UW101]
          Length = 143

 Score = 57.9 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 40/85 (47%)

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
            A  +    +  D ++    V+  + N+  +K   +VG ++  V    +S+ S    A++
Sbjct: 56  HATQVLRKNLPEDVVSVNRKVTYKDHNTNQEKTILLVGPEKVKVSKNKISVLSDEGIAMV 115

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
           G ++GD+I   A  G    EIL+V 
Sbjct: 116 GYKVGDLIEWPAKKGHLKLEILKVE 140


>gi|262191545|ref|ZP_06049727.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae CT
           5369-93]
 gi|262032553|gb|EEY51109.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae CT
           5369-93]
          Length = 135

 Score = 57.9 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
            RA V++ + M  + +   +TV      S +     +V   +    +  VSI +P+  AL
Sbjct: 39  DRATVLEPAEMPDNVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97

Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
           +G  +G  ++   PGG  KT EI+ +++
Sbjct: 98  LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125


>gi|153824399|ref|ZP_01977066.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MZO-2]
 gi|149741953|gb|EDM55982.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MZO-2]
          Length = 135

 Score = 57.9 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
            RA V++ + M  + +   +TV      S +     +V   +    +  VSI +P+  AL
Sbjct: 39  DRATVLEPAEMPDNVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97

Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
           +G  +G  ++   PGG  KT EI+ +++
Sbjct: 98  LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125


>gi|256059194|ref|ZP_05449400.1| nucleoside diphosphate kinase regulator [Brucella neotomae 5K33]
          Length = 109

 Score = 57.9 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)

Query: 88  FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
            G+TV     N G ++   +V   EAD+    +SI +PI  ALIG   G  IS  A  G+
Sbjct: 1   MGSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGK 59

Query: 148 K-TYEILQV 155
           +    +L+V
Sbjct: 60  QHELNVLKV 68


>gi|17547355|ref|NP_520757.1| regulator of nucleoside diphosphate kinase transcription regulator
           protein [Ralstonia solanacearum GMI1000]
 gi|17429658|emb|CAD16343.1| putative regulator of nucleoside diphosphate kinase transcription
           regulator protein [Ralstonia solanacearum GMI1000]
          Length = 134

 Score = 57.9 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 78  ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
                   +    +V  V   +G  + + +V   EA++ +  +S+ SP+  AL+G   GD
Sbjct: 44  PGDRIPADVVTMNSVVRVHAGAGTAQEWTLVYPDEANLAAARLSVLSPMGAALLGGRAGD 103

Query: 138 IISVNAPGGEKT-YEILQVLW 157
            +   AP G      I  +++
Sbjct: 104 EVHYAAPDGSTHALRIDAIVF 124


>gi|255534407|ref|YP_003094778.1| GreA/GreB family elongation factor [Flavobacteriaceae bacterium
           3519-10]
 gi|255340603|gb|ACU06716.1| GreA/GreB family elongation factor [Flavobacteriaceae bacterium
           3519-10]
          Length = 127

 Score = 57.9 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 45/103 (43%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
             + +     + +   +  A+ +    +  D +     V + +     ++ Y  VG  EA
Sbjct: 20  RRKKVTAEEESRILAELRGAKQVRRKELPEDVVTVDRKVRIKDHTQNKEQEYIFVGIAEA 79

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             +    SI S +A A +G ++GD+I     GGE+  EIL+V 
Sbjct: 80  KPKRNKHSILSEMALATVGYKVGDVIEWPFEGGERKIEILKVE 122


>gi|240168559|ref|ZP_04747218.1| nucleoside diphosphate kinase regulator [Mycobacterium kansasii
           ATCC 12478]
          Length = 161

 Score = 57.5 bits (137), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 67/159 (42%), Gaps = 8/159 (5%)

Query: 1   MVDKIPVT---SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M +++  T       D +  EL   +Q      I+  ++    GD  + AE     +   
Sbjct: 1   MSEEVQSTGLAEAARDHLAAELARLRQRHDRLEIEVKNDRGMVGDHGDAAEAIQRADELA 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--DV 115
           +   R+ EL+  +    + D  + +   +  G  V+L   +      + I   +E+    
Sbjct: 61  VLADRINELDRRLKSGPLRDAGSDT---LPGGTEVTLRFPDGEVVTMHVISIIEESPEGH 117

Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           ++  ++ +SP+ +AL G++ GD ++ + P G    E++ 
Sbjct: 118 EAETLTANSPLGQALAGRQPGDTVTYSTPRGPSQVELIA 156


>gi|297580409|ref|ZP_06942336.1| nucleoside diphosphate kinase regulator [Vibrio cholerae RC385]
 gi|297536055|gb|EFH74889.1| nucleoside diphosphate kinase regulator [Vibrio cholerae RC385]
          Length = 135

 Score = 57.5 bits (137), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
            RA V++ + M  + +   +TV      S +     +V   +    +  VSI +P+  AL
Sbjct: 39  DRATVLEPAEMPDNVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97

Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
           +G  +G  ++   PGG  KT EI+ +++
Sbjct: 98  LGLAVGQQLAWPMPGGTVKTLEIIDIVY 125


>gi|298291344|ref|YP_003693283.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
 gi|296927855|gb|ADH88664.1| GreA/GreB family elongation factor [Starkeya novella DSM 506]
          Length = 166

 Score = 57.5 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 24/152 (15%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +  VT +G   I+ E          R   A++ A A GD   +   QA++E        +
Sbjct: 24  RNLVTRRGLALIEAE--------LARHRAALAAAGAKGDR--DGAAQASRE--------L 65

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
               +    AE +D      + I FG  V+L E   G ++ ++IVG+ EA+ + G ++  
Sbjct: 66  RYWSSRRANAEPVDPPAEG-EAITFGMQVTL-EAEDGAQRRFRIVGEDEAEPREGRIAWI 123

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+ARAL+GK +GD +S+  P G    EI+ V
Sbjct: 124 SPVARALMGKWIGDEVSL--PVGTM--EIVAV 151


>gi|24373499|ref|NP_717542.1| regulator of nucleoside diphosphate kinase [Shewanella oneidensis
           MR-1]
 gi|24347802|gb|AAN54986.1|AE015637_2 regulator of nucleoside diphosphate kinase [Shewanella oneidensis
           MR-1]
          Length = 135

 Score = 57.5 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 2/93 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RA+++  + M  + +   + V     +S D    ++V  ++A    G +SI +P
Sbjct: 34  LEAELDRADIVPAAQMPANVVTMNSEVKFRVSSSNDTFCLRLVYPKDA-TGEGTISILAP 92

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G   GD I    PGG      I ++++
Sbjct: 93  VGSALLGLSQGDQIEWPGPGGTMVKVCIEEIVY 125


>gi|152969224|ref|YP_001334333.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|262041289|ref|ZP_06014500.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330006064|ref|ZP_08305482.1| regulator of nucleoside diphosphate kinase [Klebsiella sp. MS 92-3]
 gi|150954073|gb|ABR76103.1| nucleoside diphosphate kinase regulator [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|259041405|gb|EEW42465.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328536002|gb|EGF62415.1| regulator of nucleoside diphosphate kinase [Klebsiella sp. MS 92-3]
          Length = 140

 Score = 57.5 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA+++    M  D +   + V   +  SG+++   +V   +    +  +S+ +P
Sbjct: 38  LNEELDRAQMLAPEAMPHDVVTMNSRVKFRDLTSGEERVRTLVFPSQVTDSASQLSVLAP 97

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G ++G  I    PGG     E+L++L+
Sbjct: 98  VGAALLGLKVGSTIHWELPGGASTHLEVLELLY 130


>gi|170719436|ref|YP_001747124.1| nucleoside diphosphate kinase regulator [Pseudomonas putida W619]
 gi|169757439|gb|ACA70755.1| GreA/GreB family elongation factor [Pseudomonas putida W619]
          Length = 136

 Score = 57.5 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   +  +V  ++A    G VSI +PI  AL+G  +G+ I   AP
Sbjct: 54  VVTMNSRVHCREEASGKDYHLTLVYPKDA-GGEGKVSILAPIGCALLGLSVGEQIDWPAP 112

Query: 145 GGEK-TYEILQVLW 157
           GG+    ++L V +
Sbjct: 113 GGKTLKLKLLAVEY 126


>gi|262173799|ref|ZP_06041476.1| regulator of nucleoside diphosphate kinase [Vibrio mimicus MB-451]
 gi|261891157|gb|EEY37144.1| regulator of nucleoside diphosphate kinase [Vibrio mimicus MB-451]
          Length = 171

 Score = 57.5 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
            RA V++   M  + +   +TV      S +     +V   +    +  VSI +P+  AL
Sbjct: 75  DRATVLEPEEMPENVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 133

Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
           +G  +G  ++   PGG  KT EI+ +++
Sbjct: 134 LGLAVGQQLAWPMPGGTLKTLEIIDIVY 161


>gi|300023786|ref|YP_003756397.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525607|gb|ADJ24076.1| GreA/GreB family elongation factor [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 164

 Score = 57.5 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 2/94 (2%)

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            ELE  + RAEV+  +++  + +   + V     +S  ++  ++V   EAD+    +S+ 
Sbjct: 39  QELEIEMGRAEVVQAASVPANVVRMDSIVEFR-TDSAQQRRVKLVFPGEADISQDKISVL 97

Query: 124 SPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
           +PI  ALIG   G  I+  A  G++ T  ++ V 
Sbjct: 98  TPIGVALIGLAAGQSITWTARDGKQHTLTVIAVE 131


>gi|113869543|ref|YP_728032.1| transcription elongation factor GreA [Ralstonia eutropha H16]
 gi|113528319|emb|CAJ94664.1| transcription elongation factor GreA [Ralstonia eutropha H16]
          Length = 139

 Score = 57.5 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 48/111 (43%), Gaps = 4/111 (3%)

Query: 48  EYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107
           E  A++      E     L++++ RA ++    +  D +     +          +N+ +
Sbjct: 22  ERIASRADSAQLEDM---LDSLLARATIVAPEEIPTDVVTMNTRLVCNLPGEQAPRNWTL 78

Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           V    AD  +G +S+ SP+ +AL+G   G  +S   P G E+   +  + +
Sbjct: 79  VYPDAADFDAGRLSVLSPVGQALLGARAGQTVSYRLPDGREQQVSVAGIAF 129


>gi|126458551|ref|YP_001075250.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 1106a]
 gi|134279304|ref|ZP_01766017.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 305]
 gi|167723223|ref|ZP_02406459.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei DM98]
 gi|167742194|ref|ZP_02414968.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 14]
 gi|167849216|ref|ZP_02474724.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei B7210]
 gi|167906159|ref|ZP_02493364.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei NCTC 13177]
 gi|167914483|ref|ZP_02501574.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 112]
 gi|217418762|ref|ZP_03450269.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 576]
 gi|237508824|ref|ZP_04521539.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei MSHR346]
 gi|242312653|ref|ZP_04811670.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 1106b]
 gi|254300234|ref|ZP_04967680.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 406e]
 gi|126232319|gb|ABN95732.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 1106a]
 gi|134249723|gb|EBA49804.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 305]
 gi|157810014|gb|EDO87184.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 406e]
 gi|217398066|gb|EEC38081.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 576]
 gi|235001029|gb|EEP50453.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei MSHR346]
 gi|242135892|gb|EES22295.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 1106b]
          Length = 132

 Score = 57.5 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 57/105 (54%), Gaps = 1/105 (0%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           +    N      L+ ++ RA++++ + +  + +   + + L+++ +G    + IV    A
Sbjct: 18  KHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLLDETAGQDMAWTIVYPDAA 77

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           + + G +++ SP+  AL+G   G+ + V  PGG + T +I+++++
Sbjct: 78  NFEQGRLNVFSPVGMALLGSRCGERVKVTLPGGADATLKIVEIVY 122


>gi|238754630|ref|ZP_04615983.1| Regulator of nucleoside diphosphate kinase [Yersinia ruckeri ATCC
           29473]
 gi|238707089|gb|EEP99453.1| Regulator of nucleoside diphosphate kinase [Yersinia ruckeri ATCC
           29473]
          Length = 136

 Score = 57.5 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA+++  S +  D +   + V   + NS ++    +V        S  +S+ +P
Sbjct: 34  LNEELDRADILPPSEIPADVVTMNSRVRFRDLNSEEEHIRTLVYPASLKDSSEQISVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  + D I+   PGG E    +L++L+
Sbjct: 94  LGAALLGLHVNDEINWTLPGGDEARITVLELLY 126


>gi|261344908|ref|ZP_05972552.1| regulator of nucleoside diphosphate kinase [Providencia rustigianii
           DSM 4541]
 gi|282567048|gb|EFB72583.1| regulator of nucleoside diphosphate kinase [Providencia rustigianii
           DSM 4541]
          Length = 136

 Score = 57.5 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RA+++    +  D +   +T+  ++  S +++   +V        +  +S+ +P
Sbjct: 34  LNDELDRADIVSPQEIPADVVTMNSTIRFLDLISNEERTRTLVYPASLKDSAEQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           I  AL+G  + D IS   P G E    +L++++
Sbjct: 94  IGAALLGLHVNDEISWALPNGVETRVRVLEIVY 126


>gi|146305312|ref|YP_001185777.1| nucleoside diphosphate kinase regulator [Pseudomonas mendocina ymp]
 gi|145573513|gb|ABP83045.1| GreA/GreB family elongation factor [Pseudomonas mendocina ymp]
          Length = 135

 Score = 57.5 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+  + RAEV+ +  +    +   + V   E++SG   +  +V  Q+A    G VSI +P
Sbjct: 34  LQAELDRAEVVGLDEVPAGLVTMNSRVHCREESSGKDYHLTLVYPQDA-GGEGTVSILAP 92

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G  +G  I   APGG++    +L V +
Sbjct: 93  VGSALLGLSVGQHIDWPAPGGKQLKLTLLAVEY 125


>gi|53717174|ref|YP_105968.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei ATCC 23344]
 gi|67643290|ref|ZP_00442037.1| transcription elongation factor [Burkholderia mallei GB8 horse 4]
 gi|76817365|ref|YP_337627.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 1710b]
 gi|121598026|ref|YP_989947.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei SAVP1]
 gi|124381514|ref|YP_001024430.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei NCTC 10229]
 gi|126445041|ref|YP_001062285.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 668]
 gi|126447434|ref|YP_001078147.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei NCTC 10247]
 gi|167000163|ref|ZP_02265983.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei PRL-20]
 gi|167819370|ref|ZP_02451050.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           pseudomallei 91]
 gi|167827743|ref|ZP_02459214.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           pseudomallei 9]
 gi|167897815|ref|ZP_02485217.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           pseudomallei 7894]
 gi|167922382|ref|ZP_02509473.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           pseudomallei BCC215]
 gi|226197683|ref|ZP_03793258.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei Pakistan 9]
 gi|254174295|ref|ZP_04880957.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei ATCC 10399]
 gi|254183333|ref|ZP_04889925.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 1655]
 gi|254189966|ref|ZP_04896475.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254193144|ref|ZP_04899579.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei S13]
 gi|254200813|ref|ZP_04907178.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei FMH]
 gi|254204783|ref|ZP_04911136.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei JHU]
 gi|254265246|ref|ZP_04956111.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 1710a]
 gi|254357032|ref|ZP_04973307.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei 2002721280]
 gi|52423144|gb|AAU46714.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei ATCC 23344]
 gi|76581838|gb|ABA51312.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 1710b]
 gi|121225824|gb|ABM49355.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei SAVP1]
 gi|124289534|gb|ABM98803.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei NCTC 10229]
 gi|126224532|gb|ABN88037.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 668]
 gi|126240288|gb|ABO03400.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei NCTC 10247]
 gi|147748425|gb|EDK55500.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei FMH]
 gi|147754369|gb|EDK61433.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei JHU]
 gi|148026059|gb|EDK84182.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei 2002721280]
 gi|157937643|gb|EDO93313.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160695341|gb|EDP85311.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei ATCC 10399]
 gi|169649898|gb|EDS82591.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei S13]
 gi|184213866|gb|EDU10909.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 1655]
 gi|225930292|gb|EEH26304.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei Pakistan 9]
 gi|238524601|gb|EEP88033.1| transcription elongation factor [Burkholderia mallei GB8 horse 4]
 gi|243063816|gb|EES46002.1| putative nucleoside diphosphate kinase regulator [Burkholderia
           mallei PRL-20]
 gi|254216248|gb|EET05633.1| regulator of nucleoside diphosphate kinase [Burkholderia
           pseudomallei 1710a]
          Length = 132

 Score = 57.1 bits (136), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 58/105 (55%), Gaps = 1/105 (0%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           +    N      L+ ++ RA++++ + +  + +   + + L+++ +G  + + IV    A
Sbjct: 18  KHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLLDETAGQDRAWTIVYPDAA 77

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           + + G +++ SP+  AL+G   G+ + V  PGG + T +I+++++
Sbjct: 78  NFEQGRLNVFSPVGMALLGSRCGERVKVTLPGGADATLKIVEIVY 122


>gi|262375495|ref|ZP_06068728.1| predicted protein [Acinetobacter lwoffii SH145]
 gi|262309749|gb|EEY90879.1| predicted protein [Acinetobacter lwoffii SH145]
          Length = 134

 Score = 57.1 bits (136), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 1/105 (0%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           E Q+     M  LE+ + RAEV++   ++ + +   + V L    S +     +V   E 
Sbjct: 21  ENQSKLSETMIRLEDELARAEVVEPQAIASNIVTMHSRVLLTIAPSTEAVEVTLVYPHEF 80

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
             + G V++ +PI  A++G   G  I    P G      I +VL+
Sbjct: 81  KGEKGQVNVIAPIGAAILGLAEGQTIEWPQPDGNTMKVTIEKVLF 125


>gi|300690546|ref|YP_003751541.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
           PSI07]
 gi|299077606|emb|CBJ50241.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
           PSI07]
          Length = 134

 Score = 57.1 bits (136), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 78  ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
            S M    +    +V  V   SG  + + +V   EA++ +  +S+ SP+  AL+G   GD
Sbjct: 44  PSDMIPADVVTMNSVVRVRAGSGAAQEWTLVYPDEANLAAARLSVLSPMGSALLGGRAGD 103

Query: 138 IISVNAPGGEKT-YEILQVLW 157
            +   AP G      I  +++
Sbjct: 104 EVHYAAPDGSAHALRIDAIIF 124


>gi|241664050|ref|YP_002982410.1| GreA/GreB family elongation factor [Ralstonia pickettii 12D]
 gi|240866077|gb|ACS63738.1| GreA/GreB family elongation factor [Ralstonia pickettii 12D]
          Length = 135

 Score = 57.1 bits (136), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 78  ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
                   +    +V  V  ++G ++ + +V  +EA+V S  +S+ SP+  AL+G   G 
Sbjct: 45  PGNKIPADVVTMNSVVCVVDDTGAEQEWTLVYPEEANVASAKLSVLSPMGAALLGARAGK 104

Query: 138 IISVNAPGG-EKTYEILQVLW 157
            I   AP G +++  I +V +
Sbjct: 105 SIKYAAPNGAQRSLRIDRVAF 125


>gi|16126441|ref|NP_421005.1| transcription elongation factor regulatory protein [Caulobacter
           crescentus CB15]
 gi|221235222|ref|YP_002517658.1| transcription elongation factor regulatory protein [Caulobacter
           crescentus NA1000]
 gi|13423705|gb|AAK24173.1| transcription elongation factor GreA/GreB, family [Caulobacter
           crescentus CB15]
 gi|220964394|gb|ACL95750.1| transcription elongation factor greB [Caulobacter crescentus
           NA1000]
          Length = 160

 Score = 57.1 bits (136), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 53  KELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
           +         +         A++++        + FG  V+  E+  G  + ++IVG+ +
Sbjct: 63  RTAMARATRDLRYWSARRATAQLMERDPAK-SVVQFGDRVTF-EREDGRVQTFRIVGEDQ 120

Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           AD   G +S  +PIARAL+GK +G++ +  APGGE   EI  +
Sbjct: 121 ADPAKGTISYIAPIARALLGKAVGEVSA--APGGEI--EITAI 159


>gi|294995299|ref|ZP_06800990.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           210]
 gi|326905627|gb|EGE52560.1| hypothetical protein TBPG_03585 [Mycobacterium tuberculosis W-148]
          Length = 161

 Score = 57.1 bits (136), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 1   MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M +K+    +     D +  EL   +Q      ++  ++    GD  + AE     +   
Sbjct: 1   MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-- 115
           L   R+ EL+  +        +  SG     G T   +    G+     ++   E     
Sbjct: 61  LLGDRINELDRRL----RTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVG 116

Query: 116 -QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            ++  ++  SP+ +AL G + GD ++ + P G    ++L V 
Sbjct: 117 REAETLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158


>gi|260770384|ref|ZP_05879317.1| regulator of nucleoside diphosphate kinase [Vibrio furnissii CIP
           102972]
 gi|260615722|gb|EEX40908.1| regulator of nucleoside diphosphate kinase [Vibrio furnissii CIP
           102972]
 gi|315181451|gb|ADT88364.1| nucleoside diphosphate kinase regulator [Vibrio furnissii NCTC
           11218]
          Length = 135

 Score = 57.1 bits (136), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 2/94 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +LE+ + RA + +   M  + ++  +TV        +     +V   E       +SI +
Sbjct: 33  KLEDELDRATINEPQDMPDNVVSMNSTVRFKFTGKDEIIQKNLVYPHEVKNSDD-ISIFA 91

Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           P+  AL+G   G  ++   PGG EKT EI++V++
Sbjct: 92  PVGSALLGLAAGQTLTWPMPGGAEKTIEIIEVVY 125


>gi|229513214|ref|ZP_04402679.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TMA 21]
 gi|229349624|gb|EEO14579.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae TMA 21]
          Length = 135

 Score = 57.1 bits (136), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
            RA V++ + M  + +   +TV      S +     +V   +    +  VSI +P+  AL
Sbjct: 39  DRATVLEPAEMPENVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97

Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
           +G  +G  ++   PGG  KT EI+ +++
Sbjct: 98  LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125


>gi|238799365|ref|ZP_04642803.1| Regulator of nucleoside diphosphate kinase [Yersinia mollaretii
           ATCC 43969]
 gi|238716795|gb|EEQ08673.1| Regulator of nucleoside diphosphate kinase [Yersinia mollaretii
           ATCC 43969]
          Length = 152

 Score = 57.1 bits (136), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  + +  D +   + V   + N+ ++    +V        +  +S+ +P
Sbjct: 50  LNEELDRAEILPPNAIPADVVTMNSRVRFRDLNNQEEHIRTLVYPASLKDSNEQLSVMAP 109

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  + D IS   PGG E    +L++L+
Sbjct: 110 LGAALLGLHVNDEISWKLPGGDETRITVLELLY 142


>gi|300703154|ref|YP_003744756.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
           CFBP2957]
 gi|299070817|emb|CBJ42114.1| regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
           CFBP2957]
          Length = 134

 Score = 57.1 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 78  ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
                   +    +V  V   SG  + + +V   EAD+ +  +S+ SP+  AL+G   GD
Sbjct: 44  PGDKIPADVVTMNSVVRVRTESGVAQQWTLVYPDEADLAAARLSVCSPMGAALLGGRAGD 103

Query: 138 IISVNAPGGEKT-YEILQVLW 157
            +   AP G     +I  +++
Sbjct: 104 AVHYVAPDGTTHALQIDAIVF 124


>gi|86156938|ref|YP_463723.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773449|gb|ABC80286.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 137

 Score = 57.1 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 34/158 (21%)

Query: 1   MV-DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  D+I V+    ++++  L  + QE R                                
Sbjct: 1   MSRDRIYVSETDHERLRA-LVEQHQEGRDAAAAE-------------------------- 33

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
                 L+  + RA  +    +  D +   + V   +  +G  +   +V    AD++ G 
Sbjct: 34  -----RLDAELDRAVRVPDGQVPADVVTMNSRVVYEDGATGRLREITLVYPTAADLREGR 88

Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           +S+ +P+  AL+G   G  IS   P G E   ++  V 
Sbjct: 89  LSVLAPVGAALLGLSTGQSISWTLPDGREVELKVRSVQ 126


>gi|226941111|ref|YP_002796185.1| Transcription elongation factor [Laribacter hongkongensis HLHK9]
 gi|226716038|gb|ACO75176.1| Transcription elongation factor [Laribacter hongkongensis HLHK9]
          Length = 135

 Score = 57.1 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            +LE  + RA+V+D   M    +   + V   +     +  +Q+   ++       +S+ 
Sbjct: 32  RQLETELARADVVDPQDMPAGVVTMNSRVRFADAAGATR-EFQLCYPKDMTGSPDQLSVL 90

Query: 124 SPIARALIGKELGDIISVNAP-GGEKTYEILQV 155
           +P+  AL+G   G  I    P GG     +L V
Sbjct: 91  APVGAALLGLSAGQAIDWPLPDGGHTRLTVLDV 123


>gi|15610924|ref|NP_218305.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           H37Rv]
 gi|15843410|ref|NP_338447.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           CDC1551]
 gi|31794961|ref|NP_857454.1| nucleoside diphosphate kinase regulator [Mycobacterium bovis
           AF2122/97]
 gi|121639705|ref|YP_979929.1| nucleoside diphosphate kinase regulator [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|148663656|ref|YP_001285179.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           H37Ra]
 gi|148824995|ref|YP_001289749.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           F11]
 gi|167970951|ref|ZP_02553228.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           H37Ra]
 gi|215405842|ref|ZP_03418023.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           02_1987]
 gi|215425039|ref|ZP_03422958.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           T92]
 gi|215432769|ref|ZP_03430688.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           EAS054]
 gi|218755573|ref|ZP_03534369.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           GM 1503]
 gi|219559875|ref|ZP_03538951.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           T17]
 gi|224992200|ref|YP_002646890.1| nucleotide diphosphate kinase regulator [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253800836|ref|YP_003033838.1| hypothetical protein TBMG_03835 [Mycobacterium tuberculosis KZN
           1435]
 gi|254233281|ref|ZP_04926607.1| hypothetical protein TBCG_03714 [Mycobacterium tuberculosis C]
 gi|254366335|ref|ZP_04982379.1| hypothetical protein TBHG_03726 [Mycobacterium tuberculosis str.
           Haarlem]
 gi|254552903|ref|ZP_05143350.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260184713|ref|ZP_05762187.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           CPHL_A]
 gi|260198837|ref|ZP_05766328.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           T46]
 gi|260202993|ref|ZP_05770484.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           K85]
 gi|289441225|ref|ZP_06430969.1| hypothetical protein TBLG_01968 [Mycobacterium tuberculosis T46]
 gi|289445389|ref|ZP_06435133.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           CPHL_A]
 gi|289556055|ref|ZP_06445265.1| hypothetical protein TBXG_03805 [Mycobacterium tuberculosis KZN
           605]
 gi|289572037|ref|ZP_06452264.1| hypothetical protein TBJG_02925 [Mycobacterium tuberculosis T17]
 gi|289572440|ref|ZP_06452667.1| hypothetical protein TBOG_00284 [Mycobacterium tuberculosis K85]
 gi|289747630|ref|ZP_06507008.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           02_1987]
 gi|289748311|ref|ZP_06507689.1| hypothetical protein TBDG_00199 [Mycobacterium tuberculosis T92]
 gi|289755921|ref|ZP_06515299.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           EAS054]
 gi|289763972|ref|ZP_06523350.1| transcription elongation factor [Mycobacterium tuberculosis GM
           1503]
 gi|297636470|ref|ZP_06954250.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           KZN 4207]
 gi|297733464|ref|ZP_06962582.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           KZN R506]
 gi|306778150|ref|ZP_07416487.1| hypothetical protein TMAG_00280 [Mycobacterium tuberculosis
           SUMu001]
 gi|306778682|ref|ZP_07417019.1| hypothetical protein TMBG_02328 [Mycobacterium tuberculosis
           SUMu002]
 gi|306786704|ref|ZP_07425026.1| hypothetical protein TMCG_01294 [Mycobacterium tuberculosis
           SUMu003]
 gi|306791071|ref|ZP_07429393.1| hypothetical protein TMDG_01526 [Mycobacterium tuberculosis
           SUMu004]
 gi|306791390|ref|ZP_07429692.1| hypothetical protein TMEG_00285 [Mycobacterium tuberculosis
           SUMu005]
 gi|306795455|ref|ZP_07433757.1| hypothetical protein TMFG_02022 [Mycobacterium tuberculosis
           SUMu006]
 gi|306801430|ref|ZP_07438098.1| hypothetical protein TMHG_02857 [Mycobacterium tuberculosis
           SUMu008]
 gi|306805636|ref|ZP_07442304.1| hypothetical protein TMGG_01333 [Mycobacterium tuberculosis
           SUMu007]
 gi|306970032|ref|ZP_07482693.1| hypothetical protein TMIG_00141 [Mycobacterium tuberculosis
           SUMu009]
 gi|306974266|ref|ZP_07486927.1| hypothetical protein TMJG_01042 [Mycobacterium tuberculosis
           SUMu010]
 gi|307081974|ref|ZP_07491144.1| hypothetical protein TMKG_01033 [Mycobacterium tuberculosis
           SUMu011]
 gi|307086588|ref|ZP_07495701.1| hypothetical protein TMLG_00280 [Mycobacterium tuberculosis
           SUMu012]
 gi|313660795|ref|ZP_07817675.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           KZN V2475]
 gi|54039913|sp|P65096|Y3817_MYCBO RecName: Full=Uncharacterized protein Mb3817
 gi|54042581|sp|P65095|Y3788_MYCTU RecName: Full=Uncharacterized protein Rv3788/MT3896
 gi|1552871|emb|CAB02467.1| HYPOTHETICAL PROTEIN Rv3788 [Mycobacterium tuberculosis H37Rv]
 gi|13883777|gb|AAK48261.1| transcription elongation factor, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|31620559|emb|CAD96003.1| HYPOTHETICAL PROTEIN Mb3817 [Mycobacterium bovis AF2122/97]
 gi|121495353|emb|CAL73840.1| Hypothetical protein BCG_3850 [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|124603074|gb|EAY61349.1| hypothetical protein TBCG_03714 [Mycobacterium tuberculosis C]
 gi|134151847|gb|EBA43892.1| hypothetical protein TBHG_03726 [Mycobacterium tuberculosis str.
           Haarlem]
 gi|148507808|gb|ABQ75617.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           H37Ra]
 gi|148723522|gb|ABR08147.1| hypothetical protein TBFG_13822 [Mycobacterium tuberculosis F11]
 gi|224775316|dbj|BAH28122.1| nucleotide diphosphate kinase regulator [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253322340|gb|ACT26943.1| hypothetical protein TBMG_03835 [Mycobacterium tuberculosis KZN
           1435]
 gi|289414144|gb|EFD11384.1| hypothetical protein TBLG_01968 [Mycobacterium tuberculosis T46]
 gi|289418347|gb|EFD15548.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           CPHL_A]
 gi|289440687|gb|EFD23180.1| hypothetical protein TBXG_03805 [Mycobacterium tuberculosis KZN
           605]
 gi|289536871|gb|EFD41449.1| hypothetical protein TBOG_00284 [Mycobacterium tuberculosis K85]
 gi|289545791|gb|EFD49439.1| hypothetical protein TBJG_02925 [Mycobacterium tuberculosis T17]
 gi|289688158|gb|EFD55646.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           02_1987]
 gi|289688898|gb|EFD56327.1| hypothetical protein TBDG_00199 [Mycobacterium tuberculosis T92]
 gi|289696508|gb|EFD63937.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           EAS054]
 gi|289711478|gb|EFD75494.1| transcription elongation factor [Mycobacterium tuberculosis GM
           1503]
 gi|308213671|gb|EFO73070.1| hypothetical protein TMAG_00280 [Mycobacterium tuberculosis
           SUMu001]
 gi|308328404|gb|EFP17255.1| hypothetical protein TMBG_02328 [Mycobacterium tuberculosis
           SUMu002]
 gi|308328808|gb|EFP17659.1| hypothetical protein TMCG_01294 [Mycobacterium tuberculosis
           SUMu003]
 gi|308332651|gb|EFP21502.1| hypothetical protein TMDG_01526 [Mycobacterium tuberculosis
           SUMu004]
 gi|308340143|gb|EFP28994.1| hypothetical protein TMEG_00285 [Mycobacterium tuberculosis
           SUMu005]
 gi|308344129|gb|EFP32980.1| hypothetical protein TMFG_02022 [Mycobacterium tuberculosis
           SUMu006]
 gi|308347931|gb|EFP36782.1| hypothetical protein TMGG_01333 [Mycobacterium tuberculosis
           SUMu007]
 gi|308351799|gb|EFP40650.1| hypothetical protein TMHG_02857 [Mycobacterium tuberculosis
           SUMu008]
 gi|308352582|gb|EFP41433.1| hypothetical protein TMIG_00141 [Mycobacterium tuberculosis
           SUMu009]
 gi|308356534|gb|EFP45385.1| hypothetical protein TMJG_01042 [Mycobacterium tuberculosis
           SUMu010]
 gi|308360482|gb|EFP49333.1| hypothetical protein TMKG_01033 [Mycobacterium tuberculosis
           SUMu011]
 gi|308364000|gb|EFP52851.1| hypothetical protein TMLG_00280 [Mycobacterium tuberculosis
           SUMu012]
 gi|323717654|gb|EGB26856.1| hypothetical protein TMMG_00281 [Mycobacterium tuberculosis
           CDC1551A]
 gi|328460564|gb|AEB05987.1| hypothetical protein TBSG_03858 [Mycobacterium tuberculosis KZN
           4207]
          Length = 161

 Score = 57.1 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 1   MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M +K+    +     D +  EL   +Q      ++  ++    GD  + AE     +   
Sbjct: 1   MSEKVESKGLADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-- 115
           +   R+ EL+  +        +  SG     G T   +    G+     ++   E     
Sbjct: 61  ILGDRINELDRRL----RTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVG 116

Query: 116 -QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            ++  ++  SP+ +AL G + GD ++ + P G    ++L V 
Sbjct: 117 REAETLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158


>gi|237748358|ref|ZP_04578838.1| GreA/GreB family elongation factor [Oxalobacter formigenes OXCC13]
 gi|229379720|gb|EEO29811.1| GreA/GreB family elongation factor [Oxalobacter formigenes OXCC13]
          Length = 130

 Score = 57.1 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 2/93 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           EL++ + RA V++   +  D I   +T   +++ S ++    +V   +AD  +  +S+ +
Sbjct: 34  ELQDELDRANVVEPEELPNDVITINSTARFLDETSNEQFEITLVYPDKADGAT-KISVLA 92

Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
           P+  AL+G  +G  I    PG +K   ++L V 
Sbjct: 93  PVGSALLGMSVGQSIPWQVPGRQKLLLKVLDVK 125


>gi|83747221|ref|ZP_00944263.1| Regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
           UW551]
 gi|207721693|ref|YP_002252132.1| regulator of nucleoside diphosphate kinase protein [Ralstonia
           solanacearum MolK2]
 gi|207744206|ref|YP_002260598.1| regulator of nucleoside diphosphate kinase protein [Ralstonia
           solanacearum IPO1609]
 gi|83726045|gb|EAP73181.1| Regulator of nucleoside diphosphate kinase [Ralstonia solanacearum
           UW551]
 gi|206586855|emb|CAQ17440.1| regulator of nucleoside diphosphate kinase protein [Ralstonia
           solanacearum MolK2]
 gi|206595611|emb|CAQ62538.1| regulator of nucleoside diphosphate kinase protein [Ralstonia
           solanacearum IPO1609]
          Length = 134

 Score = 57.1 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 78  ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
                   +    +V  V   SG  + + +V   EAD+ +  +S+ SP+  AL+G   GD
Sbjct: 44  PGDKIPADVVTMNSVVRVRAASGVAQQWTLVYPDEADLAAARLSVCSPMGAALLGGRAGD 103

Query: 138 IISVNAPGGEKT-YEILQVLW 157
            +   AP G      I  +++
Sbjct: 104 AVHYVAPDGTTHALRIDAIVF 124


>gi|197287446|ref|YP_002153318.1| nucleoside diphosphate kinase regulator [Proteus mirabilis HI4320]
 gi|227358292|ref|ZP_03842633.1| regulator of nucleoside diphosphate kinase [Proteus mirabilis ATCC
           29906]
 gi|194684933|emb|CAR47113.1| regulator of nucleoside diphosphate kinase [Proteus mirabilis
           HI4320]
 gi|227161628|gb|EEI46665.1| regulator of nucleoside diphosphate kinase [Proteus mirabilis ATCC
           29906]
          Length = 136

 Score = 57.1 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA+++  + +  + +   + V  ++  + +++   +V        +  +S+ +P
Sbjct: 34  LNEELDRADIVTPADIPANIVTMNSKVRFMDLKNNEERIRTLVYPASLKDSATELSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  + D IS   P G E   ++L++L+
Sbjct: 94  MGAALLGLAINDEISWQLPNGLETKVKVLEILY 126


>gi|315127979|ref|YP_004069982.1| transcription elongation factor and transcript cleavage
          [Pseudoalteromonas sp. SM9913]
 gi|315016493|gb|ADT69831.1| transcription elongation factor and transcript cleavage
          [Pseudoalteromonas sp. SM9913]
          Length = 47

 Score = 56.7 bits (135), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
          +    +T +G+ ++QQE      E+RP + K +S A + GD SENA+
Sbjct: 1  MKTNLITREGYLQLQQEHDHLWNEKRPEVTKIVSWAASLGDRSENAD 47


>gi|153217601|ref|ZP_01951282.1| nucleoside diphosphate kinase regulator [Vibrio cholerae 1587]
 gi|124113451|gb|EAY32271.1| nucleoside diphosphate kinase regulator [Vibrio cholerae 1587]
          Length = 109

 Score = 56.7 bits (135), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
            RA V++ + M  + +   +TV      S +     +V   +    +  VSI +P+  AL
Sbjct: 13  DRATVLEPAEMPENVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 71

Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
           +G  +G  ++   PGG  KT EI+ +++
Sbjct: 72  LGLAVGQQLAWPMPGGTLKTLEIIDIVY 99


>gi|261212380|ref|ZP_05926665.1| regulator of nucleoside diphosphate kinase [Vibrio sp. RC341]
 gi|260838311|gb|EEX64967.1| regulator of nucleoside diphosphate kinase [Vibrio sp. RC341]
          Length = 135

 Score = 56.7 bits (135), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
            RA V++ + M  + +   +TV      S +     +V   +    +  VSI +P+  AL
Sbjct: 39  DRATVLEPAEMPDNVVTMNSTVRFKFLGSDEVMEKTLVYPNDMKSSAD-VSIFAPVGSAL 97

Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
           +G  +G  ++   PGG  KT EI+ +++
Sbjct: 98  LGLAVGQQLAWPMPGGTVKTLEIIDIVY 125


>gi|15601365|ref|NP_232996.1| nucleoside diphosphate kinase regulator [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121587466|ref|ZP_01677234.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae
           2740-80]
 gi|121725791|ref|ZP_01679091.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae V52]
 gi|147672055|ref|YP_001215388.1| nucleoside diphosphate kinase regulator [Vibrio cholerae O395]
 gi|153817965|ref|ZP_01970632.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae NCTC
           8457]
 gi|153830764|ref|ZP_01983431.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 623-39]
 gi|227812174|ref|YP_002812184.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae M66-2]
 gi|229506224|ref|ZP_04395733.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae BX
           330286]
 gi|229509917|ref|ZP_04399397.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae B33]
 gi|229516522|ref|ZP_04405969.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC9]
 gi|229525966|ref|ZP_04415370.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae bv.
           albensis VL426]
 gi|229528560|ref|ZP_04417951.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae
           12129(1)]
 gi|229605764|ref|YP_002876468.1| nucleoside diphosphate kinase regulator [Vibrio cholerae MJ-1236]
 gi|254849767|ref|ZP_05239117.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MO10]
 gi|255746617|ref|ZP_05420564.1| regulator of nucleoside diphosphate kinase [Vibrio cholera CIRS
           101]
 gi|262158791|ref|ZP_06029904.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae INDRE
           91/1]
 gi|262168458|ref|ZP_06036154.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC27]
 gi|298499416|ref|ZP_07009222.1| nucleoside diphosphate kinase regulator [Vibrio cholerae MAK 757]
 gi|9658019|gb|AAF96508.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121548301|gb|EAX58367.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae
           2740-80]
 gi|121631556|gb|EAX63924.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae V52]
 gi|126511503|gb|EAZ74097.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae NCTC
           8457]
 gi|146314438|gb|ABQ18978.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae O395]
 gi|148873748|gb|EDL71883.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae 623-39]
 gi|227011316|gb|ACP07527.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae M66-2]
 gi|227015333|gb|ACP11542.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae O395]
 gi|229334922|gb|EEO00408.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae
           12129(1)]
 gi|229336124|gb|EEO01142.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae bv.
           albensis VL426]
 gi|229346403|gb|EEO11374.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC9]
 gi|229352362|gb|EEO17302.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae B33]
 gi|229356575|gb|EEO21493.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae BX
           330286]
 gi|229372250|gb|ACQ62672.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae
           MJ-1236]
 gi|254845472|gb|EET23886.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae MO10]
 gi|255736371|gb|EET91769.1| regulator of nucleoside diphosphate kinase [Vibrio cholera CIRS
           101]
 gi|262022987|gb|EEY41692.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae RC27]
 gi|262029364|gb|EEY48015.1| regulator of nucleoside diphosphate kinase [Vibrio cholerae INDRE
           91/1]
 gi|297541397|gb|EFH77448.1| nucleoside diphosphate kinase regulator [Vibrio cholerae MAK 757]
 gi|327485632|gb|AEA80038.1| Regulator of nucleoside diphosphate kinase [Vibrio cholerae
           LMA3894-4]
          Length = 135

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
            RA V++ + M  D +   +TV      S +     +V   +    +  VSI +P+  AL
Sbjct: 39  DRATVLEPAEMPEDVVTMNSTVRFKFLGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97

Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
           +G  +G  ++   PGG  KT EI+ +++
Sbjct: 98  LGLAVGQQLAWPMPGGTLKTLEIIDIVY 125


>gi|153004547|ref|YP_001378872.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
 gi|152028120|gb|ABS25888.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. Fw109-5]
          Length = 138

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +L+  + RA  I+++    D +   A V+ V+  SG ++   +V  ++ADV +G VS+ +
Sbjct: 35  QLDAELDRAVPIEVAPP--DLVTMNARVAFVDLASGVRRELVLVYPRDADVAAGRVSVLA 92

Query: 125 PIARALIGKELGDIISVNAPGGEK-TYEILQ 154
           PI  AL+G  +G+ I    P G      IL 
Sbjct: 93  PIGAALLGLSVGEEIDWPLPDGRVARLRILS 123


>gi|220915658|ref|YP_002490962.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953512|gb|ACL63896.1| GreA/GreB family elongation factor [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 138

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 34/158 (21%)

Query: 1   MV-DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  D+I V+    ++++  L  + QE R                                
Sbjct: 1   MSRDRIYVSETDHERLRA-LVEQHQEGRDAAAAE-------------------------- 33

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
                 L+  + RA  +    +  D +A  + V   +  +G  +   +V    AD++ G 
Sbjct: 34  -----RLDAELDRAVRVPDGQVPPDVVAMNSRVVYEDGATGRLREVTLVYPTAADLREGR 88

Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           +S+ +P+  AL+G   G  IS   P G E    +  V 
Sbjct: 89  LSVLAPVGAALLGLSTGQSISWTLPDGREVELRVRSVQ 126


>gi|302381565|ref|YP_003817388.1| GreA/GreB family elongation factor [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192193|gb|ADK99764.1| GreA/GreB family elongation factor [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 158

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 52/137 (37%), Gaps = 17/137 (12%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT +G   I   L                   AYG    +   +A +         + 
Sbjct: 28  NLVTPQGLAAIDDALA--------------QARAAYGAAQASGSIEADRTAMARATRDLR 73

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                   A+V++ +     R     T+   +   G  + ++IVG+ EAD  +G VS  S
Sbjct: 74  YWSARRANAQVVETAAEGRVRFGGSVTIERED---GRTQTWRIVGEDEADPANGSVSHVS 130

Query: 125 PIARALIGKELGDIISV 141
           P+ARAL GK +GD   V
Sbjct: 131 PLARALTGKGVGDEAVV 147


>gi|84386369|ref|ZP_00989397.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
 gi|84378793|gb|EAP95648.1| transcription elongation factor GreB [Vibrio splendidus 12B01]
          Length = 56

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
          +    +T +G++K++ E      E+RP I K ++ A + GD SENA+
Sbjct: 1  MKTKLITREGYNKLKAEHDHLWHEKRPEITKIVTWAASLGDRSENAD 47


>gi|53721904|ref|YP_110889.1| transcription elongation factor [Burkholderia pseudomallei K96243]
 gi|52212318|emb|CAH38342.1| putative transcription elongation factor [Burkholderia pseudomallei
           K96243]
          Length = 136

 Score = 56.7 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 58/105 (55%), Gaps = 1/105 (0%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           +    N      L+ ++ RA++++ + +  + +   + + L+++ +G  + + IV    A
Sbjct: 22  KHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLLDETAGQDRAWTIVYPDAA 81

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           + + G +++ SP+  AL+G   G+ + V  PGG + T +I+++++
Sbjct: 82  NFEQGRLNVFSPVGMALLGSRCGERVKVTLPGGADATLKIVEIVY 126


>gi|215413716|ref|ZP_03422384.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           94_M4241A]
 gi|298527263|ref|ZP_07014672.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           94_M4241A]
 gi|298497057|gb|EFI32351.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           94_M4241A]
          Length = 161

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 1   MVDKIP---VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQN 57
           M +K+    +     D +  EL   +Q      ++  ++    GD  + AE     +   
Sbjct: 1   MSEKVESKELADAARDHLAAELARLRQRRDRLEVEVKNDRGMIGDHGDAAEAIQRADELA 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-- 115
           +   R+ EL+  +        +  SG     G T   +    G+     ++   E     
Sbjct: 61  ILGDRINELDRRL----RTGPTPWSGSETLPGGTEVTLRFPDGEVVTMHVISVVEETPVG 116

Query: 116 -QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            ++  ++  SP+ +AL G + GD ++ + P G    ++L V 
Sbjct: 117 REAETLTARSPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 158


>gi|78356295|ref|YP_387744.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218700|gb|ABB38049.1| GreA/GreB family elongation factor [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 137

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + RA +++   +    +   + V    + SG     ++V  + +  +   VSI +P
Sbjct: 35  LERELERAIIVEPDKIPPTVVTMNSVVRFKLRPSGAVHRLKLVYPRHSAAEGETVSILAP 94

Query: 126 IARALIGKELGDIISV-NAPGGEKTYEILQVLW 157
           +  AL+G   GD I+  NA GG     +  + +
Sbjct: 95  VGSALLGLAEGDEITWPNASGGTLQLVVDHIEY 127


>gi|227877958|ref|ZP_03995963.1| possible transcription elongation factor GreA [Lactobacillus
          crispatus JV-V01]
 gi|227862461|gb|EEJ69975.1| possible transcription elongation factor GreA [Lactobacillus
          crispatus JV-V01]
          Length = 90

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 7  VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
          +T +G+ +I+ E+   ++ +RPR IK +  ARA GDLSEN EY  AK      + R+  L
Sbjct: 26 MTPEGYQQIEDEIARLKK-DRPRRIKILQAARALGDLSENTEYTEAKRDLGHLQSRLRYL 84

Query: 67 ENIITR 72
             +  
Sbjct: 85 GKQLKY 90


>gi|22124088|ref|NP_667511.1| nucleoside diphosphate kinase regulator [Yersinia pestis KIM 10]
 gi|45443579|ref|NP_995118.1| nucleoside diphosphate kinase regulator [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51597830|ref|YP_072021.1| nucleoside diphosphate kinase regulator [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809699|ref|YP_653615.1| nucleoside diphosphate kinase regulator [Yersinia pestis Antiqua]
 gi|108813637|ref|YP_649404.1| nucleoside diphosphate kinase regulator [Yersinia pestis Nepal516]
 gi|145597618|ref|YP_001161694.1| nucleoside diphosphate kinase regulator [Yersinia pestis Pestoides
           F]
 gi|153948732|ref|YP_001399422.1| nucleoside diphosphate kinase regulator [Yersinia
           pseudotuberculosis IP 31758]
 gi|153997370|ref|ZP_02022470.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
           CA88-4125]
 gi|162421792|ref|YP_001605709.1| nucleoside diphosphate kinase regulator [Yersinia pestis Angola]
 gi|165928305|ref|ZP_02224137.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937429|ref|ZP_02225992.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166212183|ref|ZP_02238218.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167400655|ref|ZP_02306164.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167426754|ref|ZP_02318507.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167468355|ref|ZP_02333059.1| regulator of nucleoside diphosphate kinase [Yersinia pestis FV-1]
 gi|170022744|ref|YP_001719249.1| nucleoside diphosphate kinase regulator [Yersinia
           pseudotuberculosis YPIII]
 gi|186897022|ref|YP_001874134.1| nucleoside diphosphate kinase regulator [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930702|ref|YP_002348577.1| nucleoside diphosphate kinase regulator [Yersinia pestis CO92]
 gi|229836848|ref|ZP_04457013.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
           Pestoides A]
 gi|229839254|ref|ZP_04459413.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229899819|ref|ZP_04514960.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904131|ref|ZP_04519242.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
           Nepal516]
 gi|270488565|ref|ZP_06205639.1| regulator of nucleoside diphosphate kinase [Yersinia pestis KIM
           D27]
 gi|294505286|ref|YP_003569348.1| nucleoside diphosphate kinase regulator [Yersinia pestis Z176003]
 gi|21956837|gb|AAM83762.1|AE013616_8 regulator of nucleoside diphosphate kinase [Yersinia pestis KIM 10]
 gi|45438449|gb|AAS63995.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51591112|emb|CAH22776.1| regulator of nucleoside diphosphate kinase [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777285|gb|ABG19804.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
           Nepal516]
 gi|108781612|gb|ABG15670.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
           Antiqua]
 gi|115349313|emb|CAL22282.1| regulator of nucleoside diphosphate kinase [Yersinia pestis CO92]
 gi|145209314|gb|ABP38721.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
           Pestoides F]
 gi|149289007|gb|EDM39087.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
           CA88-4125]
 gi|152960227|gb|ABS47688.1| regulator of nucleoside diphosphate kinase [Yersinia
           pseudotuberculosis IP 31758]
 gi|162354607|gb|ABX88555.1| regulator of nucleoside diphosphate kinase [Yersinia pestis Angola]
 gi|165914534|gb|EDR33148.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165919693|gb|EDR37026.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166206929|gb|EDR51409.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167050023|gb|EDR61431.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054281|gb|EDR64102.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749278|gb|ACA66796.1| GreA/GreB family elongation factor [Yersinia pseudotuberculosis
           YPIII]
 gi|186700048|gb|ACC90677.1| GreA/GreB family elongation factor [Yersinia pseudotuberculosis
           PB1/+]
 gi|229678249|gb|EEO74354.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
           Nepal516]
 gi|229687311|gb|EEO79386.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229695620|gb|EEO85667.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705791|gb|EEO91800.1| regulator of nucleoside diphosphate kinase [Yersinia pestis
           Pestoides A]
 gi|262363349|gb|ACY60070.1| nucleoside diphosphate kinase regulator [Yersinia pestis D106004]
 gi|262367273|gb|ACY63830.1| nucleoside diphosphate kinase regulator [Yersinia pestis D182038]
 gi|270337069|gb|EFA47846.1| regulator of nucleoside diphosphate kinase [Yersinia pestis KIM
           D27]
 gi|294355745|gb|ADE66086.1| nucleoside diphosphate kinase regulator [Yersinia pestis Z176003]
 gi|320017137|gb|ADW00709.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 136

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  + +  D +   + V  ++ NS ++    +V        +  +S+ +P
Sbjct: 34  LNEELDRAEILPPNEIPADVVTMNSRVRFLDLNSQEEHIRTLVYPASLKDSNEQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  + D IS   PGG E    +L++L+
Sbjct: 94  LGAALLGLHVNDEISWKLPGGDETRITVLELLY 126


>gi|299140367|ref|ZP_07033528.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
 gi|299140416|ref|ZP_07033572.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
 gi|298597600|gb|EFI53782.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
 gi|298597642|gb|EFI53819.1| GreA/GreB family elongation factor [Acidobacterium sp. MP5ACTX8]
          Length = 70

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            E D+    VS  SP+ RAL+    GD + + APGG+++  +L+V +
Sbjct: 3   DEVDLDRNHVSWVSPLGRALMRSAEGDSVVLEAPGGKESLTVLEVRY 49


>gi|237746097|ref|ZP_04576577.1| GreA/GreB family elongation factor [Oxalobacter formigenes HOxBLS]
 gi|229377448|gb|EEO27539.1| GreA/GreB family elongation factor [Oxalobacter formigenes HOxBLS]
          Length = 140

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 60/159 (37%), Gaps = 37/159 (23%)

Query: 1   MVDKIPVTS--KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M ++ P+T     +++++Q LR  +    P +                            
Sbjct: 11  MNERPPITVTTHDYERLEQMLRNAKYRNIPGMAD-------------------------- 44

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
                  L+  + RA V++   +  D I   +T   ++  + D+    +V   +AD  S 
Sbjct: 45  -------LQRELDRANVVEPEELPEDVITINSTARFIDDCTNDQYEITLVYPDKADGVS- 96

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
            +S+ +P+  AL+G   G  I    PG +K    +L V 
Sbjct: 97  KISVLAPVGSALLGLSAGQSIPWQVPGRQKLQLRVLDVK 135


>gi|310816463|ref|YP_003964427.1| nucleoside diphosphate kinase regulator [Ketogulonicigenium vulgare
           Y25]
 gi|308755198|gb|ADO43127.1| nucleoside diphosphate kinase regulator [Ketogulonicigenium vulgare
           Y25]
          Length = 129

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 13/129 (10%)

Query: 21  WRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIST 80
              +        A+ E  A G    N E                   + ++RA+V+  + 
Sbjct: 5   KLPRVVISDATMAVLERLAEGLERRNPELAE-------------HFVDELSRAKVVKSAA 51

Query: 81  MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
           +  D +  G+TV+  ++ +G  +   +   + AD+  G +S+++PI  ALIG   G   S
Sbjct: 52  LPVDTVDLGSTVTFRDETTGKSQTVTLALPENADINEGRISVATPIGVALIGLSAGAKFS 111

Query: 141 VNAPGGEKT 149
             A  G K 
Sbjct: 112 WLANTGTKH 120


>gi|260564705|ref|ZP_05835190.1| LOW QUALITY PROTEIN: prokaryotic transcription elongation factor
           GreA/GreB [Brucella melitensis bv. 1 str. 16M]
 gi|265989928|ref|ZP_06102485.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265992967|ref|ZP_06105524.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator
           [Brucella melitensis bv. 3 str. Ether]
 gi|260152348|gb|EEW87441.1| LOW QUALITY PROTEIN: prokaryotic transcription elongation factor
           GreA/GreB [Brucella melitensis bv. 1 str. 16M]
 gi|262763837|gb|EEZ09869.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator
           [Brucella melitensis bv. 3 str. Ether]
 gi|263000597|gb|EEZ13287.1| LOW QUALITY PROTEIN: nucleoside diphosphate kinase regulator
           [Brucella melitensis bv. 1 str. Rev.1]
          Length = 113

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 89  GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148
           G+TV     N G ++   +V   EAD+    +SI +PI  ALIG   G  IS  A  G++
Sbjct: 6   GSTVEFR-ANDGHERRVTLVYPGEADIAKNRISILTPIGTALIGLAPGQSISWTARDGKQ 64

Query: 149 -TYEILQV 155
               +L+V
Sbjct: 65  HELNVLKV 72


>gi|325104691|ref|YP_004274345.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145]
 gi|324973539|gb|ADY52523.1| GreA/GreB family elongation factor [Pedobacter saltans DSM 12145]
          Length = 135

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 48/97 (49%)

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           E    +L   + +AEV+   T+    ++    + + E+ SG +  + +V  ++A  +   
Sbjct: 35  EFNKQKLAAELEKAEVLTEKTLPEGFVSVNTKLKIEEEQSGKELEFILVEPKKAKQKLNK 94

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +SI SPI  AL G + GD +S   P G + Y I +V 
Sbjct: 95  LSILSPIGVALAGYKSGDKVSWEMPDGIRNYFIKEVT 131


>gi|258622671|ref|ZP_05717691.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM573]
 gi|258585048|gb|EEW09777.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM573]
          Length = 136

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
            RA V++   M  + +   +TV      S +     +V   +    +  VSI +P+  AL
Sbjct: 40  DRATVLEPEEMPENVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 98

Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
           +G  +G  ++   PGG  KT EI+ +++
Sbjct: 99  LGLAVGQQLAWPMPGGTLKTLEIIDIVY 126


>gi|154246864|ref|YP_001417822.1| nucleoside diphosphate kinase regulator [Xanthobacter autotrophicus
           Py2]
 gi|154160949|gb|ABS68165.1| GreA/GreB family elongation factor [Xanthobacter autotrophicus Py2]
          Length = 143

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 3/106 (2%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A    +       EL   + RA ++ I  +    +  G+ V+   +  G+ +   +V  +
Sbjct: 32  ATAALDRIPDVAEELLAELDRARLVPIGRVPATAVQMGSKVTY--EAGGNARTVTLVYPE 89

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVL 156
           +AD+ +  VS+ +PI  ALIG   G  I   A  G +   ++++V 
Sbjct: 90  DADIAAARVSVMTPIGAALIGLSKGQSICWTARDGRRHELKVIEVQ 135


>gi|197120960|ref|YP_002132911.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
 gi|196170809|gb|ACG71782.1| GreA/GreB family elongation factor [Anaeromyxobacter sp. K]
          Length = 138

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 56/158 (35%), Gaps = 34/158 (21%)

Query: 1   MV-DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  D+I V+    ++++  L  + QE R                                
Sbjct: 1   MSRDRIYVSETDHERLRA-LVEQHQEGRDAAAAE-------------------------- 33

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
                 L+  + RA  +    +  D +A  + V   +  +G  +   +V    AD++ G 
Sbjct: 34  -----RLDAELDRAVRVPDGQVPADVVAMNSRVVYEDGATGRLREVTLVYPTAADLREGR 88

Query: 120 VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
           +S+ +P+  AL+G   G  IS   P G E    +  V 
Sbjct: 89  LSVLAPVGAALLGLSTGQSISWTLPDGREVELRVRSVQ 126


>gi|70730822|ref|YP_260563.1| acetyltransferase [Pseudomonas fluorescens Pf-5]
 gi|68345121|gb|AAY92727.1| acetyltransferase, GNAT family family [Pseudomonas fluorescens
           Pf-5]
          Length = 379

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE+ + RA V+    ++ + I   +   L      ++    +V  ++AD  +G  S+ S
Sbjct: 279 ELEHELERAIVVKPQQVARNVITMNSRALLQ--LDDEEIEVALVYPEDADSTAGKHSVYS 336

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            I  A++G + GD I        +  EI +VL+
Sbjct: 337 DIGAAILGYQEGDTIDWRISDRTRRIEIRKVLY 369


>gi|262369571|ref|ZP_06062899.1| GreA/GreB family elongation factor [Acinetobacter johnsonii SH046]
 gi|262315639|gb|EEY96678.1| GreA/GreB family elongation factor [Acinetobacter johnsonii SH046]
          Length = 134

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 1/105 (0%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           E Q      M  LE  + RA+V+    M  + +   A V L    S +     +V   + 
Sbjct: 21  EHQPKLTPTMQLLEEELARADVVAPQDMPANVVTMNAKVLLTIAPSTEASEITLVYPHDF 80

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
             + G V++ +PI  A++G   G  I    P G+    +I +V++
Sbjct: 81  KGEKGQVNVVAPIGAAILGLAEGQEIEWPQPDGQMMKVKIEKVVY 125


>gi|166011342|ref|ZP_02232240.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|167420627|ref|ZP_02312380.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|165989726|gb|EDR42027.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166961433|gb|EDR57454.1| regulator of nucleoside diphosphate kinase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
          Length = 150

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  + +  D +   + V  ++ NS ++    +V        +  +S+ +P
Sbjct: 48  LNEELDRAEILPPNEIPADVVTMNSRVRFLDLNSQEEHIRTLVYPASLKDSNEQLSVMAP 107

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  + D IS   PGG E    +L++L+
Sbjct: 108 LGAALLGLHVNDEISWKLPGGDETRITVLELLY 140


>gi|167572677|ref|ZP_02365551.1| regulator of nucleoside diphosphate kinase [Burkholderia
           oklahomensis C6786]
          Length = 132

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 55/105 (52%), Gaps = 1/105 (0%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
                N      L+ ++ RA++++ + +  + +   + + L+++ +G    + IV    A
Sbjct: 18  RHAERNPRYQEMLDTLLERADIVEPNKIQANVVTMNSQIKLIDETAGQDMAWTIVYPDAA 77

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           + + G +++ SP+  AL+G   G+ + V  PGG + T +I ++++
Sbjct: 78  NFEQGRLNVFSPVGMALLGARCGEQVKVTLPGGADATLKIAEIVY 122


>gi|258626677|ref|ZP_05721502.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM603]
 gi|258581028|gb|EEW05952.1| Regulator of nucleoside diphosphate kinase [Vibrio mimicus VM603]
          Length = 136

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
            RA V++   M  + +   +TV      S +     +V   +    +  VSI +P+  AL
Sbjct: 40  DRATVLEPEEMPENVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 98

Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
           +G  +G  ++   PGG  KT EI+ +++
Sbjct: 99  LGLAVGQQLAWPMPGGTLKTLEIIDIVY 126


>gi|238789786|ref|ZP_04633568.1| Regulator of nucleoside diphosphate kinase [Yersinia frederiksenii
           ATCC 33641]
 gi|238722145|gb|EEQ13803.1| Regulator of nucleoside diphosphate kinase [Yersinia frederiksenii
           ATCC 33641]
          Length = 152

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  + +  D +   + V   + NS ++    +V        +  +S+ +P
Sbjct: 50  LNEELDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAP 109

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  + D IS   PGG E    +L++L+
Sbjct: 110 LGAALLGLHVNDEISWKLPGGDEARITVLELLY 142


>gi|157372615|ref|YP_001480604.1| nucleoside diphosphate kinase regulator [Serratia proteamaculans
           568]
 gi|157324379|gb|ABV43476.1| GreA/GreB family elongation factor [Serratia proteamaculans 568]
          Length = 136

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  S +  + +   + V   + ++ ++    +V           +S+ +P
Sbjct: 34  LNIELDRAEILPPSQIPANVVTMNSRVRFRDLHTAEEHVRTLVYPASLKDSHEQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G  +G+ I+   P GE+   E+L++L+
Sbjct: 94  LGAALLGMHVGNQITWQLPNGEEARIEVLELLY 126


>gi|123443968|ref|YP_001007938.1| nucleoside diphosphate kinase regulator [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090929|emb|CAL13811.1| regulator of nucleoside diphosphate kinase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 136

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  + +  D +   + V   + NS ++    +V        +  +S+ +P
Sbjct: 34  LNEELDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  + D IS   PGG E    +L++L+
Sbjct: 94  LGAALLGLHVNDEISWKLPGGDEARITVLELLY 126


>gi|187924646|ref|YP_001896288.1| GreA/GreB family elongation factor [Burkholderia phytofirmans PsJN]
 gi|187715840|gb|ACD17064.1| GreA/GreB family elongation factor [Burkholderia phytofirmans PsJN]
          Length = 136

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 48  EYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI 107
           E  AA+            L++++ RA ++D   +  + +   +  +LV++ SG++  + +
Sbjct: 18  EKHAARA--GAQAHLQDMLDDVLERAVIVDSREIPANVVTMNSQATLVDETSGEQMTWTV 75

Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
           V    AD   G +++ SP   AL+G + G+ I    P G +   ++ ++L+
Sbjct: 76  VYPPNADFAHGRLNVFSPAGIALLGAKRGERIRFTPPSGTEKVLKLEKILY 126


>gi|260773794|ref|ZP_05882709.1| regulator of nucleoside diphosphate kinase [Vibrio metschnikovii
           CIP 69.14]
 gi|260610755|gb|EEX35959.1| regulator of nucleoside diphosphate kinase [Vibrio metschnikovii
           CIP 69.14]
          Length = 136

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LEN + RA V++   +  D +   +TV    + S D     +V   +       +SI +P
Sbjct: 35  LENELDRATVLNPEEIPADVVTMNSTVKFKFQGSDDVMQKTLVYPHDVKGNDD-ISIFAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQV 155
           +  AL+G   G  ++   P G E+T EI+ +
Sbjct: 94  VGSALLGLSKGQQLTWPMPNGVERTIEIIDI 124


>gi|126666022|ref|ZP_01737002.1| regulator of nucleoside diphosphate kinase [Marinobacter sp. ELB17]
 gi|126629344|gb|EAZ99961.1| regulator of nucleoside diphosphate kinase [Marinobacter sp. ELB17]
          Length = 127

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 45/104 (43%), Gaps = 2/104 (1%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           E Q   E   A L+  ++R+ ++ ++ +    +     V   +++S  +    +V   E 
Sbjct: 22  EKQGNLETAAA-LDEELSRSTLVPLADIPDTVVTMNTAVRFQDEDSKKEHQLTLVYPHEM 80

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
               G +SI +P   AL+G  +G+ I     G +    +I+ V 
Sbjct: 81  GDGEGKISILAPAGSALLGLSVGESIKWPVRGRKNLHLKIISVQ 124


>gi|262403647|ref|ZP_06080205.1| regulator of nucleoside diphosphate kinase [Vibrio sp. RC586]
 gi|262350151|gb|EEY99286.1| regulator of nucleoside diphosphate kinase [Vibrio sp. RC586]
          Length = 135

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
            RA V++   M  + +   +TV      S +     +V   +    +  VSI +P+  AL
Sbjct: 39  DRATVLEPEDMPENVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 97

Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
           +G  +G  ++   PGG  KT EI+ +++
Sbjct: 98  LGLAVGQQLAWPMPGGALKTLEIIDIVY 125


>gi|217969327|ref|YP_002354561.1| GreA/GreB family elongation factor [Thauera sp. MZ1T]
 gi|217506654|gb|ACK53665.1| GreA/GreB family elongation factor [Thauera sp. MZ1T]
          Length = 135

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA+V +   M  D I   +    VE+ +G +    +   ++A+ ++  VSI SP
Sbjct: 33  LRAELERADVREPQDMPADVITMNSRARFVEEGTGREYELTLAYPKDANAEAHRVSIFSP 92

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
              AL+G   G  I   +  G E   ++L+V W
Sbjct: 93  AGSALLGLSAGQSIDWKSADGKEIRLKVLEVTW 125


>gi|301049802|ref|ZP_07196743.1| regulator of nucleoside diphosphate kinase domain protein
           [Escherichia coli MS 185-1]
 gi|300298434|gb|EFJ54819.1| regulator of nucleoside diphosphate kinase domain protein
           [Escherichia coli MS 185-1]
          Length = 81

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 88  FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
             + V     + G+ +   +V   +    +  +S+ +P+  AL+G  +GD I    PGG 
Sbjct: 1   MNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLRVGDSIHWELPGGV 60

Query: 148 -KTYEILQVLW 157
               E+L++ +
Sbjct: 61  ATHLEVLELEY 71


>gi|163757146|ref|ZP_02164248.1| transcription elongation factor [Kordia algicida OT-1]
 gi|161322874|gb|EDP94221.1| transcription elongation factor [Kordia algicida OT-1]
          Length = 139

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           +  + +L   +  A ++D S M  D I F + VS+    +  KK  QIV   E D++   
Sbjct: 32  QNSLLQLNKELKNALIVDESEMPNDIIRFNSIVSIS-AENNWKKTLQIVIPTEVDIEKNK 90

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +SI +P+  +LIG+   D I   +  GE+   I  V 
Sbjct: 91  ISILTPLGASLIGRSSNDNIQCTSNSGEQKIIIESVR 127


>gi|254785677|ref|YP_003073106.1| transcription elongation factor GreA [Teredinibacter turnerae
           T7901]
 gi|237684826|gb|ACR12090.1| transcription elongation factor GreA [Teredinibacter turnerae
           T7901]
          Length = 126

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 1/97 (1%)

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           +   AEL   +  A V+D   + G R+ FG+ V++   +  +++++QIV   E+    GL
Sbjct: 26  DTDAAELRTRLASATVVDNDDIMGGRVQFGSLVTVFSIDEEEEQSFQIVSSDESLSGRGL 85

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEK-TYEILQV 155
           +   SP+A+AL G   G+++ V    G    YE+  +
Sbjct: 86  LDQRSPLAQALFGAREGEVVRVLLQNGSNCDYEVTHI 122


>gi|89891757|ref|ZP_01203260.1| hypothetical protein BBFL7_01019 [Flavobacteria bacterium BBFL7]
 gi|89516092|gb|EAS18756.1| hypothetical protein BBFL7_01019 [Flavobacteria bacterium BBFL7]
          Length = 139

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           +  +  L + +  A+++D   M  D I F + +++   N G  K  QIV     D+    
Sbjct: 32  QKSLQRLTDELKNAQILDELDMPQDVIRFNSKITVK-SNKGWSKKIQIVIPALKDLDLDR 90

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +SI +P+A AL+G    DII  N P G +  EI++V 
Sbjct: 91  ISILTPLASALLGYAQSDIIQWNLPSGLQELEIVEVT 127


>gi|154253498|ref|YP_001414322.1| GreA/GreB family elongation factor [Parvibaculum lavamentivorans
           DS-1]
 gi|154157448|gb|ABS64665.1| GreA/GreB family elongation factor [Parvibaculum lavamentivorans
           DS-1]
          Length = 133

 Score = 55.6 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 2/94 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSIS 123
            L+  + RA ++ ++ +  D +   +TV    +      +  ++    E+    G VSI+
Sbjct: 39  FLDRELNRARLLPLAHVPSDVVKVNSTVEFTLDTRGERVERLKLAFPAESTAGDGYVSIA 98

Query: 124 SPIARALIGKELGDIISVNAPGGE-KTYEILQVL 156
           SP+  AL+G   G  I   +  GE ++ ++L+V 
Sbjct: 99  SPVGVALLGLREGQSIEWTSRYGERRSLKVLKVT 132


>gi|326388482|ref|ZP_08210077.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326207030|gb|EGD57852.1| GreA/GreB family elongation factor [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 164

 Score = 55.6 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 27/152 (17%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT++G   I  ++   +                   L+E    +AA+           
Sbjct: 36  NLVTARGLALIGAKVAELESR--------------LLTLTEEDAIKAARRDLRYW----- 76

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
               +  +A    ++   G  +AFG TV+   + +G  +   IVGD EAD  +GL+S S+
Sbjct: 77  ----LTRQATAQPVARPDGSHVAFGCTVT--FRMNGKTRTVTIVGDDEADPAAGLLSFSA 130

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           P++RA++  E+G+++  +  G  +  EI+ + 
Sbjct: 131 PLSRAMMDAEVGELVDFS--GKPEAIEIVAIE 160


>gi|218461137|ref|ZP_03501228.1| hypothetical protein RetlK5_17212 [Rhizobium etli Kim 5]
          Length = 44

 Score = 55.6 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/44 (75%), Positives = 41/44 (93%)

Query: 1  MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLS 44
          MV+K+P+T  GF K+Q+ELRWRQQEERPRII+AI+EARA+GDLS
Sbjct: 1  MVEKVPMTQGGFVKLQEELRWRQQEERPRIIEAIAEARAHGDLS 44


>gi|300776138|ref|ZP_07085997.1| GreA/GreB family elongation factor [Chryseobacterium gleum ATCC
           35910]
 gi|300505271|gb|EFK36410.1| GreA/GreB family elongation factor [Chryseobacterium gleum ATCC
           35910]
          Length = 126

 Score = 55.6 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 46/103 (44%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
             + ++      L   + +A+ +    +  D +     V+L +     +  Y  V   + 
Sbjct: 20  RRKKVSIEEEKRLTEELRKAKQVLRRDLPADIVTVDRKVTLKDHTLNFEHEYIFVPSVKE 79

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            ++    SI S IA A++G ++GD+IS     GE+  EIL+V 
Sbjct: 80  KLKKNKYSILSDIALAVVGYKVGDVISWPFRDGERKIEILKVE 122


>gi|163747966|ref|ZP_02155295.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45]
 gi|161378763|gb|EDQ03203.1| GreA/GreB family elongation factor [Oceanibulbus indolifex HEL-45]
          Length = 146

 Score = 55.6 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 34  ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVS 93
           I  A     L E AE      + + +          I RA++++   M GD +  G+ V+
Sbjct: 19  ILNAADLVHLEELAEG-----MMHRHPTLADRFFEEIGRAQIVEDQQMPGDVVGIGSKVT 73

Query: 94  LVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT--YE 151
             ++ +G  K+  +V  ++AD+    VS+ +PI  AL+G   G     +     +     
Sbjct: 74  YRDETTGQNKSVTLVYPEDADITRSQVSVITPIGVALLGLREGASFYWDTRRENQRHMLT 133

Query: 152 ILQVL 156
           IL+V 
Sbjct: 134 ILKVE 138


>gi|238758339|ref|ZP_04619517.1| Regulator of nucleoside diphosphate kinase [Yersinia aldovae ATCC
           35236]
 gi|238703462|gb|EEP96001.1| Regulator of nucleoside diphosphate kinase [Yersinia aldovae ATCC
           35236]
          Length = 150

 Score = 55.6 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  + +  D +   + V   + NS ++    +V        +  +S+ +P
Sbjct: 48  LNEELDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAP 107

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  + D IS   PGG E    +L++L+
Sbjct: 108 LGAALLGMHVNDEISWQLPGGDETRITVLELLY 140


>gi|149369863|ref|ZP_01889714.1| transcription elongation factor [unidentified eubacterium SCB49]
 gi|149356354|gb|EDM44910.1| transcription elongation factor [unidentified eubacterium SCB49]
          Length = 139

 Score = 55.6 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           +     L   +  A ++D   M  D I F + V +    +G KK +QIV     DV++  
Sbjct: 32  QKSFKRLNEELKTAIIVDEEEMPTDVIRFNSQVLIS-TKNGWKKEFQIVSPALKDVKADK 90

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +SI + +  AL G   GD +    P G+    I +V
Sbjct: 91  ISILTVMGAALFGYAQGDTVEWEFPTGKNLITIEKV 126


>gi|134100846|ref|YP_001106507.1| nucleoside diphosphate kinase regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291008641|ref|ZP_06566614.1| nucleoside diphosphate kinase regulator [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133913469|emb|CAM03582.1| nucleoside diphosphate kinase regulator [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 162

 Score = 55.6 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 61/150 (40%), Gaps = 5/150 (3%)

Query: 9   SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELEN 68
            +   ++++E R  + + R  + + +S+    GD  +++      +     + R+A LE 
Sbjct: 10  PEARARLEEEARSLRAQRRH-LAEELSQRDPVGDRGDDSLALEGADELAWYDDRIAALER 68

Query: 69  IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE--ADVQSGLVSISSPI 126
            +T       +    + +  G  V +  ++   ++   +   +E     +   ++  SP+
Sbjct: 69  RLTG--RGRRAGQGAEGLPPGTEVRVRFEDGTVQELRVVGIPEEVPEGEEDQTMTSDSPL 126

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQVL 156
           A AL G   G  ++ + P G     +L V 
Sbjct: 127 ALALAGGSAGTDVTYSTPDGPARVHLLDVR 156


>gi|323526690|ref|YP_004228843.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1001]
 gi|323383692|gb|ADX55783.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1001]
          Length = 139

 Score = 55.6 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L++++ RA ++D   +  + +   +  +LV++ SG++  + +V   +AD   G +++ SP
Sbjct: 37  LDDVLERAVIVDSRDIPANVVTMNSQATLVDETSGEEMTWTVVYPPDADFTHGRLNVFSP 96

Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
           +  AL+G + G+ I    P G++   ++ ++L+
Sbjct: 97  VGLALLGAKRGEQIRFMPPSGDEKVLKLAKILY 129


>gi|16262576|ref|NP_435369.1| hypothetical protein SMa0229 [Sinorhizobium meliloti 1021]
 gi|14523189|gb|AAK64781.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 140

 Score = 55.6 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 1/102 (0%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A +  + +    AEL   + R  V+    +  D +  G+ V+  E   G  + + +V   
Sbjct: 27  AYQALSRDFDIAAELIEKLERPCVLPDDQVPPDVVKIGSIVTC-EVEDGPCRTFSLVYPD 85

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
           + D + G +S+ +P+  AL+G   G  +   +  G++ + I+
Sbjct: 86  DVDAEKGRISVLTPVGVALLGLRPGQAVEWFSRDGQRNHLIV 127


>gi|262164195|ref|ZP_06031933.1| regulator of nucleoside diphosphate kinase [Vibrio mimicus VM223]
 gi|262026575|gb|EEY45242.1| regulator of nucleoside diphosphate kinase [Vibrio mimicus VM223]
          Length = 136

 Score = 55.6 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
            RA V++   M  + +   +TV      S +     +V   +    +  VSI +P+  AL
Sbjct: 40  DRATVLEPEEMPENVVTMNSTVRFKFSGSDEVMEKTLVYPNDVKSSAD-VSIFAPVGSAL 98

Query: 131 IGKELGDIISVNAPGGE-KTYEILQVLW 157
           +G  +G  ++   PGG  KT EI+ +++
Sbjct: 99  LGLAVGQQLAWPMPGGALKTLEIIDIVY 126


>gi|87198849|ref|YP_496106.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87134530|gb|ABD25272.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 159

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   I RA+++    +  D +A  + V   ++ +G  +   +V   EAD+    VSI 
Sbjct: 59  RMLMEEIGRAQIVPAQDLPPDAVAMRSVVRFRDEATGAVRTVTLVYPAEADIAQDRVSIL 118

Query: 124 SPIARALIGKELGDIISV-NAPGGEKTYEILQV 155
           +P+   LIG   G  I   N  G ++   I QV
Sbjct: 119 TPVGAGLIGLRAGQSIDWPNVRGKQRAITIEQV 151


>gi|260896883|ref|ZP_05905379.1| transcription elongation factor GreA [Vibrio parahaemolyticus
           Peru-466]
 gi|308086278|gb|EFO35973.1| transcription elongation factor GreA [Vibrio parahaemolyticus
           Peru-466]
          Length = 38

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/38 (55%), Positives = 28/38 (73%)

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           S+SSPIAR LIGK  GD +++  PGG K +EI +V +I
Sbjct: 1   SVSSPIARGLIGKMEGDEVAIQTPGGAKDFEIDRVEYI 38


>gi|159042970|ref|YP_001531764.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12]
 gi|157910730|gb|ABV92163.1| GreA/GreB family elongation factor [Dinoroseobacter shibae DFL 12]
          Length = 148

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 1/91 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   I RA ++  + M  + I  G + +  ++ +G ++   +V  ++AD+    VS+ +P
Sbjct: 49  LLEEIARARIVPAAKMPLNVIGIGKSATFRDETTGQERTVTLVYPEDADISRARVSVMTP 108

Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQV 155
           I  AL+G   G +   N  G E+    +++V
Sbjct: 109 IGVALLGLAEGAVFHWNTRGEERRMLTVIRV 139


>gi|330825392|ref|YP_004388695.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans
           K601]
 gi|329310764|gb|AEB85179.1| GreA/GreB family elongation factor [Alicycliphilus denitrificans
           K601]
          Length = 303

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE+ I RA V+D   ++ D +   +   L  +   ++    +V  ++AD     +S+ S
Sbjct: 203 ELEHEIERAVVVDPRQVAEDVVTMNSKALL--EVGNEEVQVALVYPEDADGGVEKLSVCS 260

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            I  A++G + GD     +P       I +VL+
Sbjct: 261 GIGTAILGYKEGDAFDWRSPNRTCHIRIRKVLY 293


>gi|319763198|ref|YP_004127135.1| gcn5-related n-acetyltransferase [Alicycliphilus denitrificans BC]
 gi|317117759|gb|ADV00248.1| GCN5-related N-acetyltransferase [Alicycliphilus denitrificans BC]
          Length = 303

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE+ I RA V+D   ++ D +   +   L  +   ++    +V  ++AD     +S+ S
Sbjct: 203 ELEHEIERAVVVDPRQVAEDVVTMNSKALL--EVGNEEVQVALVYPEDADGGVEKLSVCS 260

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            I  A++G + GD     +P       I +VL+
Sbjct: 261 GIGTAILGYKEGDAFDWRSPNRTCHIRIRKVLY 293


>gi|238782987|ref|ZP_04627015.1| Regulator of nucleoside diphosphate kinase [Yersinia bercovieri
           ATCC 43970]
 gi|238716190|gb|EEQ08174.1| Regulator of nucleoside diphosphate kinase [Yersinia bercovieri
           ATCC 43970]
          Length = 152

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  + +  D +   + V   + N+ ++    +V        +  +S+ +P
Sbjct: 50  LNEELDRAEILPPNAIPADVVTMNSRVRFRDLNNQEEHIRTLVYPASLKDSNDQLSVMAP 109

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  + D IS   PGG E    +L++L+
Sbjct: 110 LGAALLGLHVNDEISWKLPGGDEARIIVLELLY 142


>gi|307729138|ref|YP_003906362.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
 gi|307583673|gb|ADN57071.1| GreA/GreB family elongation factor [Burkholderia sp. CCGE1003]
          Length = 139

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L++++ RA ++D   +  + +   +  +LV++ SG+   + +V   EAD   G +++ SP
Sbjct: 37  LDDVLERAVIVDSREIPANVLTMNSQATLVDEASGEHMTWTVVYPPEADFAHGRLNVFSP 96

Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
           +  AL+G + G+ I    P G++   ++ ++L+
Sbjct: 97  VGLALLGAKRGEQIRFMPPSGDEKVLKLEKILY 129


>gi|330964215|gb|EGH64475.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 135

 Score = 55.2 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   + ++V  Q+A    G VS+ +P+  ALIG ++G  I   AP
Sbjct: 54  VVTMNSRVHCCEEVSGKDYHLKLVYPQDA-GAEGTVSVLAPMGSALIGLQVGQHIDWPAP 112

Query: 145 GGEK-TYEILQVLW 157
           GG+     +L V +
Sbjct: 113 GGKTLKLTLLAVEY 126


>gi|270263263|ref|ZP_06191533.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
 gi|270042951|gb|EFA16045.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
          Length = 136

 Score = 54.8 bits (130), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RAE++  + +  + +   + V   + ++ ++    +V           +S+ +P
Sbjct: 34  LNDELDRAEILPPAQIPANVVTMNSRVRFRDLHTAEEHVRTLVYPASLKDSHEQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G  +G+ I+   P GE+   E+L++L+
Sbjct: 94  LGAALLGMHVGNQITWQLPNGEEARIEVLELLY 126


>gi|239983774|ref|ZP_04706298.1| nucleoside diphosphate kinase regulator [Streptomyces albus J1074]
 gi|291455579|ref|ZP_06594969.1| nucleoside diphosphate kinase regulator [Streptomyces albus J1074]
 gi|291358528|gb|EFE85430.1| nucleoside diphosphate kinase regulator [Streptomyces albus J1074]
          Length = 160

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 8/148 (5%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            D +P+++     ++QEL   +  ER  +   + +     D+       AA +LQ   + 
Sbjct: 3   SDPLPISAAARHALEQELADVRA-ERETVAATLQDP----DIVAGDRGDAADQLQRSGDL 57

Query: 62  RM--AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
               A +E+I TR    D +      +    +   V  + G ++   I    +    S L
Sbjct: 58  ARLDARIEDITTRLRQADDAGPPPAGVVGVGSTVTVRFDDGAEQTVSIGEVTQGYDAS-L 116

Query: 120 VSISSPIARALIGKELGDIISVNAPGGE 147
           V+  SP+ +AL+G   GD +    P GE
Sbjct: 117 VTADSPLGKALMGCRPGDAVRYRTPDGE 144


>gi|121583336|ref|YP_973772.1| GreA/GreB family elongation factor [Polaromonas naphthalenivorans
           CJ2]
 gi|120596594|gb|ABM40030.1| GreA/GreB family elongation factor [Polaromonas naphthalenivorans
           CJ2]
          Length = 132

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 38/84 (45%)

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           AELE+      ++    +  D I   + V +V+  S  ++   I    +A+   G +S+ 
Sbjct: 28  AELESSFEFPHLVASRDIPADVITMYSQVEIVDPLSHRRQKLTICYPGDAEPALGFISVL 87

Query: 124 SPIARALIGKELGDIISVNAPGGE 147
           SP+  +L+G  +G       P G+
Sbjct: 88  SPVGTSLLGLSVGATAHWRTPTGD 111


>gi|46206102|ref|ZP_00047698.2| COG0782: Transcription elongation factor [Magnetospirillum
           magnetotacticum MS-1]
          Length = 74

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 5/76 (6%)

Query: 81  MSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
              D + FGATV+++ +    ++ ++IVG+ EAD  +G +S  +P+ARAL GK +GD ++
Sbjct: 4   FDDDVVRFGATVTVL-REDDTRQIFRIVGEDEADPAAGSISYVAPLARALTGKGVGDTVT 62

Query: 141 VNAPGGEKTYEILQVL 156
           VN       +EI ++ 
Sbjct: 63  VN----GHDFEIAEIR 74


>gi|332995758|gb|AEF05813.1| transcription elongation factor GreB [Alteromonas sp. SN2]
          Length = 87

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 76  IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135
           +D S    +++ FGA V +  +  G     ++VG  E   +   +SI SP+ARAL+GKE 
Sbjct: 1   MDYSPEQENKVYFGAWVEIENEQ-GQVLELRLVGYDEIFGRRDYISIDSPMARALVGKEE 59

Query: 136 GDIISVNAPGGEKTYEILQVLW 157
            D I+V      K + I ++ +
Sbjct: 60  DDDITVKTETDVKEWWINRIWY 81


>gi|329847121|ref|ZP_08262149.1| regulator of nucleoside diphosphate kinase [Asticcacaulis
           biprosthecum C19]
 gi|328842184|gb|EGF91753.1| regulator of nucleoside diphosphate kinase [Asticcacaulis
           biprosthecum C19]
          Length = 142

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L   + RA V+    ++   +  G +V       G ++  Q+V   EAD+ +G +SI 
Sbjct: 43  QYLRRELDRAAVVATMKLNPAVVRLG-SVVSYAAGKGAERTVQLVLPGEADISTGCISIL 101

Query: 124 SPIARALIGKELGDIISVNAPGGEKT-YEILQV 155
           +P+  ALIG   G  I+     G +   E+ +V
Sbjct: 102 TPVGAALIGLRAGQSITFTTAQGRQQSLEVFRV 134


>gi|227114046|ref|ZP_03827702.1| nucleoside diphosphate kinase regulator [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 136

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA+++  +++    +   + V   + N+ ++    +V           +S+ +P
Sbjct: 34  LNEELDRADILPAASIPSHVVTMNSRVRFRDLNTNEEHIRTLVYPAAVKDSQEPLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +G+ I+   P G E   E+L++L+
Sbjct: 94  LGAALLGMHVGNSITWQLPNGEETRIEVLELLY 126


>gi|120612663|ref|YP_972341.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1]
 gi|120591127|gb|ABM34567.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1]
          Length = 136

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 43/82 (52%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L +++  A+V    T+  D +   + V LV+  +G ++   I   ++AD+ +G VS+ SP
Sbjct: 34  LADLLENADVTSSRTVEADVVTMYSRVELVDTATGARQVLTICYPRDADLAAGFVSVLSP 93

Query: 126 IARALIGKELGDIISVNAPGGE 147
           +  +L+G  +G       P GE
Sbjct: 94  VGSSLLGLRVGQTARWCTPRGE 115


>gi|307300675|ref|ZP_07580450.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
 gi|306904209|gb|EFN34794.1| GreA/GreB family elongation factor [Sinorhizobium meliloti BL225C]
          Length = 140

 Score = 54.8 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 2/106 (1%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A +    +    AEL   + R  V+    +  D +  G+ V+  E   G  + + +V   
Sbjct: 27  AYQALWRDFDIAAELIEKLERPCVLPDDQVPPDVVKIGSIVTC-EVEDGPCRTFSLVYPD 85

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
           + D + G +S+ +P+  AL+G   G  +   +  G++    +++V 
Sbjct: 86  DVDAEKGRISVLTPVGVALLGLRPGQAVEWFSRDGQRNHLMVVRVE 131


>gi|319791556|ref|YP_004153196.1| transcription elongation factor grea/greb domain-containing protein
           [Variovorax paradoxus EPS]
 gi|315594019|gb|ADU35085.1| transcription elongation factor GreA/GreB domain-containing protein
           [Variovorax paradoxus EPS]
          Length = 160

 Score = 54.4 bits (129), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 64/161 (39%), Gaps = 9/161 (5%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAA--KELQNLN 59
           +DK  +  +  +++ ++L   +Q  R     A  E     +  +    +AA     Q   
Sbjct: 1   MDKFLLQQQVLERLAEDLLQAEQAVRAAHETATHEENVAENKYDTLGLEAAYLATGQARR 60

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG- 118
              + +      +          G  I  GA V L++ +   ++ +         + SG 
Sbjct: 61  AEAIRQAMANWRQFRPRPYDASKG--IQLGALVCLIDSDDKQQQLFLGPNGGSMTLVSGA 118

Query: 119 ----LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
               ++S  +P+ RA++GK  GD +S+      + +E+L+V
Sbjct: 119 QFVQVISSDAPLGRAVLGKCEGDEVSIQVALTRRQFEVLRV 159


>gi|134094680|ref|YP_001099755.1| hypothetical protein HEAR1457 [Herminiimonas arsenicoxydans]
 gi|133738583|emb|CAL61628.1| Putative transcription elongation factor GreA [Herminiimonas
           arsenicoxydans]
          Length = 139

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           EL +II+ + ++ I+    D ++  +TVS    NS +K++  IV  Q+A+ Q  L+S  +
Sbjct: 35  ELIDIISTSVILPINAPRKDCVSLYSTVSYSPYNSDEKRSITIVCPQDANPQLALISTLT 94

Query: 125 PIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
           PI  ALIG+++   I V  P       +IL V 
Sbjct: 95  PIGLALIGRKVSSTIEVELPSNRIEKIKILDVT 127


>gi|33598202|ref|NP_885845.1| putative enzyme-regulator fusion protein [Bordetella parapertussis
           12822]
 gi|33603098|ref|NP_890658.1| putative enzyme-regulator fusion protein [Bordetella bronchiseptica
           RB50]
 gi|33566760|emb|CAE38973.1| putative enzyme-regulator fusion protein [Bordetella parapertussis]
 gi|33568729|emb|CAE34487.1| putative enzyme-regulator fusion protein [Bordetella bronchiseptica
           RB50]
          Length = 320

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +AELE+ + RA V+D   ++G+ +   +   L      ++    +V   +AD  +G +S+
Sbjct: 218 LAELEHEVERAVVVDPRQVAGNVVTMNSRALLN--VDDEQVEVALVYPDDADDSAGKLSV 275

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            S    A++G + GD +        +   I +VL+
Sbjct: 276 FSDFGTAILGYQEGDAVDWRISDRTRRIWIEKVLY 310


>gi|237797836|ref|ZP_04586297.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331020686|gb|EGI00743.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 132

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   + ++V  Q+A    G VS+ +P+  AL+G ++G  I   AP
Sbjct: 54  VVTMNSRVHCREEVSGKDYHLKLVYPQDA-GAEGTVSVLAPMGSALLGLQVGQHIDWPAP 112

Query: 145 GGEK-TYEILQVLW 157
           GG+     +L V +
Sbjct: 113 GGKTLKLTLLAVEY 126


>gi|320326558|gb|EFW82609.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320331376|gb|EFW87317.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330881316|gb|EGH15465.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 144

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   + ++V  Q+A    G VS+ +P+  AL+G  +G  I   AP
Sbjct: 63  VVTMNSRVHCREEVSGKDYHLKLVYPQDA-GADGTVSVLAPMGSALLGLHVGQHIDWPAP 121

Query: 145 GGEK-TYEILQVLW 157
           GG+     +L V +
Sbjct: 122 GGKTLKLTLLAVEY 135


>gi|110634551|ref|YP_674759.1| nucleoside diphosphate kinase regulator [Mesorhizobium sp. BNC1]
 gi|110285535|gb|ABG63594.1| GreA/GreB family elongation factor [Chelativorans sp. BNC1]
          Length = 135

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           + + + RA V++ + +    +  G+T++    + G+ +   +V   EAD+  G VS+++P
Sbjct: 37  MISELERARVVEDAALPDTVVRMGSTLTYT-ADDGEPQTVSLVYPGEADIAQGRVSVTTP 95

Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQV 155
           +  ALIG  +   I   A  G     +++ +
Sbjct: 96  VGTALIGLSVNQTIDWTARDGRVHRLKVINI 126


>gi|262198442|ref|YP_003269651.1| GreA/GreB family elongation factor [Haliangium ochraceum DSM 14365]
 gi|262081789|gb|ACY17758.1| GreA/GreB family elongation factor [Haliangium ochraceum DSM 14365]
          Length = 163

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 18/159 (11%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           D+++ E+       R     A  EA+     S N + Q A+  Q  +    A+       
Sbjct: 8   DQLRAEIHKSAHVARSAARDAAQEAKHGA--SSNEKRQDARVHQEYSNLARAQHGRAEKA 65

Query: 73  AEVIDISTMSGDRIA-------FGATVSLVEKNSGDKKNY--------QIVGDQEADVQS 117
           A  +D       +          GA V + ++    +  +         + G    D   
Sbjct: 66  ARELDALDAFEAKAYSSKRPIGLGALVEVEDERGEGRTLFLAPVGAGVTLTGPG-GDGFL 124

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +V+ +SPI RAL+G+ LG+I+ V   G  K + I  V 
Sbjct: 125 SVVTPASPIGRALLGRRLGEIVDVTVRGEPKEWTITYVE 163


>gi|167649023|ref|YP_001686686.1| GreA/GreB family elongation factor [Caulobacter sp. K31]
 gi|167351453|gb|ABZ74188.1| GreA/GreB family elongation factor [Caulobacter sp. K31]
          Length = 139

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 24  QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSG 83
              RP II A +EA     L        A  L++        L   I RAE+     M  
Sbjct: 7   AVARPDIILAETEADRLSAL--------ATRLRDAAPQAADLLLEEIERAEIRADLDMPR 58

Query: 84  DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
             +   + V  V++  G+ +   +V  ++AD+ +G VS+ S +   LIG      I    
Sbjct: 59  TVVRMESVVQFVDEAHGNPRTVLLVYPRDADIAAGKVSVLSFVGAGLIGLSPHQAIQWPD 118

Query: 144 PGGE-KTYEILQVL 156
             G  +T  IL+V 
Sbjct: 119 RNGRQRTLRILKVR 132


>gi|307319085|ref|ZP_07598515.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
 gi|306895192|gb|EFN25948.1| GreA/GreB family elongation factor [Sinorhizobium meliloti AK83]
          Length = 140

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 2/106 (1%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A +  + +    AEL   + R  V+    +  D +  G+ V+  E   G  + + +V   
Sbjct: 27  AYQALSRDFDIAAELIEKLERPCVLPDDQVPPDVVKIGSIVTC-EVEDGPCRTFSLVYPD 85

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
           + D + G +S+ +P+  AL+G   G  +   +  G++    +++V 
Sbjct: 86  DVDAEKGRISVLTPVGVALLGLRPGQAVEWFSRDGQRNHLMVVRVE 131


>gi|227326625|ref|ZP_03830649.1| nucleoside diphosphate kinase regulator [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 136

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA+++  +++    +   + V   + N+ ++    +V           +S+ +P
Sbjct: 34  LNEELDRADILPSASIPSHVVTMNSRVRFRDLNTNEEHIRTLVYPAAVKDSKEPLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +G+ I+   P G E   E+L++L+
Sbjct: 94  LGAALLGMHVGNSITWQLPNGEETRIEVLELLY 126


>gi|327403126|ref|YP_004343964.1| GreA/GreB family elongation factor [Fluviicola taffensis DSM 16823]
 gi|327318634|gb|AEA43126.1| GreA/GreB family elongation factor [Fluviicola taffensis DSM 16823]
          Length = 130

 Score = 54.4 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 103 KNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
              Q+V  + ++ +   +SI +P+  ALIG    D I    P G    EIL+V  
Sbjct: 73  MKIQLVLPENSNSEQKRISILTPMGSALIGYAEKDKIMWEFPNGTHEVEILKVSH 127


>gi|167839479|ref|ZP_02466163.1| nucleoside diphosphate kinase regulator, putative [Burkholderia
           thailandensis MSMB43]
          Length = 132

 Score = 54.4 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 56/105 (53%), Gaps = 1/105 (0%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           +    N      L+ ++ RA++++   +  + +   + + L+++++G    + IV    A
Sbjct: 18  KHAERNPRYQEMLDTLLERADIVEPDKIQANVVTMNSQIKLLDESAGQDMIWTIVYPDAA 77

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPG-GEKTYEILQVLW 157
           + + G +++ SP+  AL+G   G+ + V  PG  + T +I+++++
Sbjct: 78  NFEQGRLNVFSPVGMALLGARRGERVKVTLPGAADATLKIVEIVY 122


>gi|270598461|ref|ZP_06221523.1| transcription elongation factor greB [Haemophilus influenzae
           HK1212]
 gi|270318308|gb|EFA29477.1| transcription elongation factor greB [Haemophilus influenzae
           HK1212]
          Length = 50

 Score = 54.0 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
              +SI SP+ARALIGK L D + V  P G  T  I ++ +
Sbjct: 4   KNWISIDSPVARALIGKTLDDEVRVETPSGFITLYINKIWY 44


>gi|119774570|ref|YP_927310.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
 gi|119767070|gb|ABL99640.1| GreA/GreB family elongation factor [Shewanella amazonensis SB2B]
          Length = 136

 Score = 54.0 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  ++RAEV     M  + +   + V     +S ++   ++V  ++   +   VSI +P
Sbjct: 34  LEAELSRAEVRPSKDMPANVVTMNSEVRFTVSSSAEEFCLRLVYPKDVSAKGDTVSILAP 93

Query: 126 IARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
           +  AL+G   GD +    P GG     I +V +
Sbjct: 94  VGSALLGLAQGDEMDWPRPGGGTTRVRIEEVTY 126


>gi|330962357|gb|EGH62617.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 135

 Score = 54.0 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   +  +V  Q+A V  G VS+ +P+  AL+G ++G  I   AP
Sbjct: 54  VVTMNSRVHCREEVSGKDYHLTLVYPQDAGV-EGTVSVLAPMGSALLGLQVGQHIDWPAP 112

Query: 145 GGEK-TYEILQVLW 157
           GG+     +L V +
Sbjct: 113 GGKTLKLTLLAVEY 126


>gi|256377672|ref|YP_003101332.1| GreA/GreB family elongation factor [Actinosynnema mirum DSM 43827]
 gi|255921975|gb|ACU37486.1| GreA/GreB family elongation factor [Actinosynnema mirum DSM 43827]
          Length = 155

 Score = 54.0 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 47/158 (29%), Gaps = 19/158 (12%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
             ++ +T    ++++ EL               +E  A  D  E+A  +     +     
Sbjct: 4   ARRVWLTPHTHERLRAELAGL-----------FAENSAPTDDPESALLRR--TEREERIR 50

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
            + +L N        D             TV   +    D + + +           + S
Sbjct: 51  EVQDLLNHAVI--GEDPPDDGVAEPGMVLTVRYDD--FDDTETFLLGMRAVEHGDLEVYS 106

Query: 122 ISSPIARALIGKELGDIISVNAPGG-EKTYE-ILQVLW 157
             SP+  AL G   G+     AP G       I  V +
Sbjct: 107 PESPLGAALTGARPGEHRGYRAPNGATIRVTLIAAVPY 144


>gi|332163116|ref|YP_004299693.1| nucleoside diphosphate kinase regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318604001|emb|CBY25499.1| regulator of nucleoside diphosphate kinase [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325667346|gb|ADZ43990.1| nucleoside diphosphate kinase regulator [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|330862799|emb|CBX72941.1| regulator of nucleoside diphosphate kinase [Yersinia enterocolitica
           W22703]
          Length = 136

 Score = 54.0 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  + +  D +   + V   + NS ++    +V        +  +S+ +P
Sbjct: 34  LNEELDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  + D IS   PGG E    +L++L+
Sbjct: 94  LGAALLGLHVNDEISWKLPGGDEARIIVLELLY 126


>gi|257482604|ref|ZP_05636645.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330892779|gb|EGH25440.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           mori str. 301020]
 gi|330984809|gb|EGH82912.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331012755|gb|EGH92811.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 135

 Score = 54.0 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   + ++V  Q+A    G VS+ +P+  AL+G ++G  I   AP
Sbjct: 54  VVTMNSRVHCREEVSGKDYHLKLVYPQDA-GADGTVSVLAPMGSALLGLQVGQHIDWPAP 112

Query: 145 GGEK-TYEILQVLW 157
           GG+     +L V +
Sbjct: 113 GGKTLKLTLLAVEY 126


>gi|18034019|gb|AAL57322.1|AF395125_3 GreA [Borrelia hermsii]
          Length = 81

 Score = 54.0 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 35/72 (48%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            + FG  V+++ K++G ++ Y I G  E++   G++S  SP    L+  + GD +     
Sbjct: 5   VVGFGTKVTMINKDTGREEFYLIFGPWESNPDEGIISYKSPFGENLLDAKEGDNLDFVIN 64

Query: 145 GGEKTYEILQVL 156
                Y + ++ 
Sbjct: 65  DTRFQYYVKKIE 76


>gi|331017912|gb|EGH97968.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 135

 Score = 54.0 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   + ++V  Q+A    G VS+ +P+  AL+G ++G  I   AP
Sbjct: 54  VVTMNSRVHCREEVSGKDYHLKLVYPQDA-GAEGTVSVLAPMGSALLGLQVGQHIDWPAP 112

Query: 145 GGEK-TYEILQVLW 157
           GG+     +L V +
Sbjct: 113 GGKTLKLTLLAVEY 126


>gi|238793739|ref|ZP_04637361.1| Regulator of nucleoside diphosphate kinase [Yersinia intermedia
           ATCC 29909]
 gi|238726980|gb|EEQ18512.1| Regulator of nucleoside diphosphate kinase [Yersinia intermedia
           ATCC 29909]
          Length = 152

 Score = 54.0 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  + +  D +   + V   + NS ++    +V        +  +S+ +P
Sbjct: 50  LNEELDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAP 109

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  + D IS   PGG E    ++++L+
Sbjct: 110 LGAALLGMHINDEISWKLPGGDETRITVVELLY 142


>gi|170695928|ref|ZP_02887067.1| GreA/GreB family elongation factor [Burkholderia graminis C4D1M]
 gi|170139112|gb|EDT07301.1| GreA/GreB family elongation factor [Burkholderia graminis C4D1M]
          Length = 139

 Score = 54.0 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 55/93 (59%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L++++ RA ++D   +  + +   +  +LV+++SG++  + +V   +AD   G +++ SP
Sbjct: 37  LDDVLERAVIVDSREIPANVVTMNSQATLVDESSGEQMTWTVVYPPDADFAHGRLNVFSP 96

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G + G+ I    P G EK  ++ ++L+
Sbjct: 97  VGLALLGAKRGEHIHFMPPSGAEKVLKLEKILY 129


>gi|146275634|ref|YP_001165794.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
           DSM 12444]
 gi|145322325|gb|ABP64268.1| GreA/GreB family elongation factor [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 151

 Score = 54.0 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 34  ISEARAYGDLSENAEYQAAKELQ-NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATV 92
           ++  RA  D  E     A  E +       +       + A+V+D      D +AFG+TV
Sbjct: 34  LALIRARVDEIEAHLADAVDEEEIKKLRRELRYWSTRQSTAQVMDPPQA--DVVAFGSTV 91

Query: 93  SLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YE 151
           +     +G  +   IVG  EAD  +GL++ S+P+ARAL G E G+ +     GG     E
Sbjct: 92  TF--VLNGQNRRITIVGHDEADPTAGLIAFSAPLARALNGAEAGETVDF---GGRADAIE 146

Query: 152 ILQVL 156
           +L + 
Sbjct: 147 VLSIE 151


>gi|326318708|ref|YP_004236380.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323375544|gb|ADX47813.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 139

 Score = 54.0 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 29/52 (55%)

Query: 96  EKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
           +   G ++   +   Q+AD  +G VS+ SP+  +L+G  +GD+ +   P GE
Sbjct: 67  DGADGARQVLTLCYPQDADAAAGRVSVLSPVGCSLLGLRVGDVAAWRTPQGE 118


>gi|50119243|ref|YP_048410.1| nucleoside diphosphate kinase regulator [Pectobacterium
           atrosepticum SCRI1043]
 gi|49609769|emb|CAG73203.1| putative regulator of nucleoside diphosphate kinase [Pectobacterium
           atrosepticum SCRI1043]
          Length = 136

 Score = 54.0 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RAE++  +++    +   + V   + N+ ++    +V           +S+ +P
Sbjct: 34  LNDELDRAEILPSASIPSHVVTMNSRVRFRDLNTNEEHIRTLVYPAAVKDSKEPLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +G  I+   P G E   E+L++L+
Sbjct: 94  LGAALLGMHVGSAITWQLPNGEETRIEVLELLY 126


>gi|330878495|gb|EGH12644.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 135

 Score = 54.0 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   + ++V  Q+A    G VS+ +P+  AL+G ++G  I   AP
Sbjct: 54  VVTMNSRVHCREEVSGKDYHLKLVYPQDA-GAEGTVSVLAPMGSALLGLQVGQHIDWPAP 112

Query: 145 GGEK-TYEILQVLW 157
           GG+     +L V +
Sbjct: 113 GGKTLKLTLLAVEY 126


>gi|28867461|ref|NP_790080.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213970732|ref|ZP_03398857.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
           pv. tomato T1]
 gi|301382620|ref|ZP_07231038.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061760|ref|ZP_07253301.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           tomato K40]
 gi|302133639|ref|ZP_07259629.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28850695|gb|AAO53775.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213924566|gb|EEB58136.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
           pv. tomato T1]
          Length = 135

 Score = 54.0 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   + ++V  Q+A    G VS+ +P+  AL+G ++G  I   AP
Sbjct: 54  VVTMNSRVHCREEVSGKDYHLKLVYPQDA-GAEGTVSVLAPMGSALLGLQVGQHIDWPAP 112

Query: 145 GGEK-TYEILQVLW 157
           GG+     +L V +
Sbjct: 113 GGKTLKLTLLAVEY 126


>gi|71736881|ref|YP_277097.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557434|gb|AAZ36645.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 135

 Score = 54.0 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   + ++V  Q+A    G VS+ +P+  AL+G  +G  I   AP
Sbjct: 54  VVTMNSRVHCREEVSGKDYHLKLVYPQDA-GADGTVSVLAPMGSALLGLHVGQHIDWPAP 112

Query: 145 GGEK-TYEILQVLW 157
           GG+     +L V +
Sbjct: 113 GGKTLKLTLLAVEY 126


>gi|171913830|ref|ZP_02929300.1| nucleoside diphosphate kinase regulator protein, putative
           [Verrucomicrobium spinosum DSM 4136]
          Length = 137

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/111 (19%), Positives = 47/111 (42%), Gaps = 5/111 (4%)

Query: 48  EYQAAKELQNLNEGRMAELENIITRAE-VIDISTMSGDRIAFGATVSLVE--KNSGDKKN 104
           ++  A    +  E  +  L   +  A+   D S            V + +   +  D+ +
Sbjct: 22  DHDDAFNPLDARERSL--LIERLQDAKVFEDESDDEPSVAGLQTLVRVEDLSTSPPDQFD 79

Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           + +V   EA+ +   +SI SP+  A+ G+  G  + +++P G +   +L V
Sbjct: 80  FTLVLPHEANFEDDQISILSPLGAAVFGRSAGTQVVMDSPTGTRRLLVLAV 130


>gi|254447837|ref|ZP_05061302.1| transcription elongation factor [gamma proteobacterium HTCC5015]
 gi|198262617|gb|EDY86897.1| transcription elongation factor [gamma proteobacterium HTCC5015]
          Length = 138

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 34/83 (40%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           EL   + R  ++    +S D +   + V     ++  +    +    +       VSI +
Sbjct: 35  ELFEELYRCRIVSSQEVSPDVVTMNSRVKYTRLDTQQQSTLTLCYPDQISRADDAVSILA 94

Query: 125 PIARALIGKELGDIISVNAPGGE 147
           PI  A+IG  +G II    P G+
Sbjct: 95  PIGSAIIGLSVGQIIDWPLPNGK 117


>gi|240170745|ref|ZP_04749404.1| transcription elongation factor GreA [Mycobacterium kansasii ATCC
           12478]
          Length = 160

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++S+ ++++Q++L   +Q            AR   D   +    +A ++Q   + R+  
Sbjct: 13  WISSQAYERLQRKLADLRQ----------RSAREPADSDFD---NSAPDVQRAWQTRIRR 59

Query: 66  LENIITRA-EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           + +++ RA    D             TV   +   GD + + +           + S  S
Sbjct: 60  IHDLLVRADVGEDPPDDGIAEPGMVLTVRYHDT--GDTETFLLGARGAEHCDVEVYSPRS 117

Query: 125 PIARALIGKELGDIISVNAPGG 146
           P+  A+IG   G+  S   PGG
Sbjct: 118 PLGAAVIGAIPGEQRSFTLPGG 139


>gi|167589792|ref|ZP_02382180.1| GreA/GreB family elongation factor [Burkholderia ubonensis Bu]
          Length = 132

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 59/105 (56%), Gaps = 1/105 (0%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           +    N    A L+ ++ RA+++    +  + +   + ++L+++ + +K  + IV  +EA
Sbjct: 18  KHAEHNPRFQAMLDALLERADIVQPDAIKANVVTMNSQITLLDETNHEKTTWTIVYPEEA 77

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
           +++ G +++ SP+  AL+G + G ++ V  P G +   ++ ++++
Sbjct: 78  NLEQGRLNVFSPVGMALLGTQRGQLVKVMQPSGTEKLMKVAEIVF 122


>gi|253686674|ref|YP_003015864.1| GreA/GreB family elongation factor [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753252|gb|ACT11328.1| GreA/GreB family elongation factor [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 136

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  +++    +   + V   + N+ ++    +V           +S+ +P
Sbjct: 34  LNEELDRAEILPSASIPSHVVTMNSRVRFRDLNTNEEHIRTLVYPAAVKDSQEPLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +G+ I+   P G E   E+L++L+
Sbjct: 94  LGAALLGMHVGNAITWQLPNGEETRIEVLELLY 126


>gi|261819630|ref|YP_003257736.1| nucleoside diphosphate kinase regulator [Pectobacterium wasabiae
           WPP163]
 gi|261603643|gb|ACX86129.1| GreA/GreB family elongation factor [Pectobacterium wasabiae WPP163]
          Length = 136

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  +++    +   + V   + N+ ++    +V           +S+ +P
Sbjct: 34  LNEELDRAEILPSASIPSHVVTMNSRVRFRDLNTNEEHIRTLVYPAAVKDSKEPLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
           +  AL+G  +G+ I+   P GE+   E+L++L+
Sbjct: 94  LGAALLGMHVGNAITWQLPNGEEARIEVLELLY 126


>gi|330820196|ref|YP_004349058.1| GreA/GreB family elongation factor [Burkholderia gladioli BSR3]
 gi|327372191|gb|AEA63546.1| GreA/GreB family elongation factor [Burkholderia gladioli BSR3]
          Length = 132

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 49/96 (51%), Gaps = 1/96 (1%)

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
            A L+ ++ RA++++   M  + +   +  +L ++ + +   + +V   +A   +G +++
Sbjct: 27  QAMLDTLLERADIVNADAMKANVVTMNSQFTLTDEATHEAITWTLVYPDQARSDAGRLNV 86

Query: 123 SSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
            SP+  AL+G   G+ +++  P G      +  +++
Sbjct: 87  FSPVGMALLGARQGEHVNITLPNGVAGRMTVSAIVY 122


>gi|197103524|ref|YP_002128901.1| transcription elongation factor [Phenylobacterium zucineum HLK1]
 gi|196476944|gb|ACG76472.1| transcription elongation factor [Phenylobacterium zucineum HLK1]
          Length = 143

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 2/92 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L N ++RA ++       D +  G+ V   +    + +  ++V  +EA   + L  +S  
Sbjct: 40  LWNELSRATLVQAGRAPADVVRLGSAVEYTDLTRRESRRIRLVLPREARPPA-LEPVSGT 98

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVL 156
           I  AL+G   GD+    AP GE ++ ++  V 
Sbjct: 99  IGAALLGLRPGDVFHWRAPSGELRSLQVDAVE 130


>gi|330952175|gb|EGH52435.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae Cit
           7]
          Length = 135

 Score = 52.9 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   + ++V  Q+A    G VS+ +P+  AL+G ++G  I   AP
Sbjct: 54  VVTMNSRVHCREEVSGKDYHLKLVYPQDA-GADGTVSVLAPMGSALLGLQIGQHIDWPAP 112

Query: 145 GGEK-TYEILQVLW 157
           GG+     +L V +
Sbjct: 113 GGKTLKLTLLAVEY 126


>gi|296158435|ref|ZP_06841266.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
 gi|295891379|gb|EFG71166.1| GreA/GreB family elongation factor [Burkholderia sp. Ch1-1]
          Length = 136

 Score = 52.9 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L++++ RA ++D   +  + +   +  +LV++ SG+   + +V    AD   G +++ SP
Sbjct: 34  LDDVLERAVIVDSHEIPANVVTMNSQATLVDETSGEHMTWTVVYPPNADFAHGRLNVFSP 93

Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
              AL+G + G+ I    P G +   ++ ++L+
Sbjct: 94  AGLALLGAKRGERIRFTPPSGTEKVLKLEKILF 126


>gi|302189437|ref|ZP_07266110.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           syringae 642]
 gi|330941155|gb|EGH44034.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 135

 Score = 52.9 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   + ++V  Q+A    G VS+ +P+  AL+G ++G  I   AP
Sbjct: 54  VVTMNSRVHCREEVSGKDYHLKLVYPQDA-GADGTVSVLAPMGSALLGLQIGQHIDWPAP 112

Query: 145 GGEK-TYEILQVLW 157
           GG+     +L V +
Sbjct: 113 GGKTLKLTLLAVEY 126


>gi|91784350|ref|YP_559556.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400]
 gi|91688304|gb|ABE31504.1| GreA/GreB family elongation factor [Burkholderia xenovorans LB400]
          Length = 136

 Score = 52.9 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L++++ RA ++D   +  + +   +  +LV++ SG+   + +V    AD   G +++ SP
Sbjct: 34  LDDVLERAVIVDSHEIPANVVTMNSQATLVDETSGEHMTWTVVYPPNADFAHGRLNVFSP 93

Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
              AL+G + G+ I    P G +   ++ ++L+
Sbjct: 94  AGLALLGAKRGERIRFTPPSGTEKVLKLEKILF 126


>gi|299534164|ref|ZP_07047515.1| GreA/GreB family elongation factor [Comamonas testosteroni S44]
 gi|298717811|gb|EFI58817.1| GreA/GreB family elongation factor [Comamonas testosteroni S44]
          Length = 305

 Score = 52.9 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
             E +  +LE+ I RA V+D   +  + +   +   L  +         +V  ++AD  +
Sbjct: 198 EWESQAVDLEHEIERAVVVDARQVQRNVVTMNSKALL--RLDEMAVEVALVYPEDADDSA 255

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           G +S+ S +  A++G   GD I            I +VL+
Sbjct: 256 GRLSVFSGVGTAILGCREGDRIDWRILDRTCHIRIEKVLY 295


>gi|254670249|emb|CBA05481.1| Transcription elongation factor [Neisseria meningitidis alpha153]
          Length = 40

 Score = 52.9 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 30/40 (75%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYG 41
          + KIP+T +G + ++QEL+  +   RP +I+AI+EAR++G
Sbjct: 1  MQKIPLTVRGAELLKQELQQLKSVARPEVIEAIAEARSHG 40


>gi|290476785|ref|YP_003469696.1| regulator of nucleoside diphosphate kinase [Xenorhabdus bovienii
           SS-2004]
 gi|289176129|emb|CBJ82934.1| regulator of nucleoside diphosphate kinase [Xenorhabdus bovienii
           SS-2004]
          Length = 136

 Score = 52.9 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RAE++    +  D +   + +  ++  S +++   +V        +  +S+ +P
Sbjct: 34  LNSELDRAEIVPPVEIPPDVVTMNSEIRFIDLGSNEERVRTLVYPASLQDSTKHLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
           +  AL+G  + D I+   P  EKT  ++L++++
Sbjct: 94  LGAALLGLRVNDEITWQLPNSEKTRIKVLEIIY 126


>gi|66043448|ref|YP_233289.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           syringae B728a]
 gi|63254155|gb|AAY35251.1| regulator of nucleoside diphosphate kinase [Pseudomonas syringae
           pv. syringae B728a]
 gi|330970496|gb|EGH70562.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           aceris str. M302273PT]
 gi|330983174|gb|EGH81277.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 135

 Score = 52.5 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   + ++V  Q+A    G VS+ +P+  AL+G ++G  I   AP
Sbjct: 54  VVTMNSRVHCREEVSGKDYHLKLVYPQDA-GADGTVSVLAPMGSALLGLQIGQHIDWPAP 112

Query: 145 GGEK-TYEILQVLW 157
           GG+     +L V +
Sbjct: 113 GGKTLKLTLLAVEY 126


>gi|296166914|ref|ZP_06849331.1| nucleoside diphosphate kinase regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897791|gb|EFG77380.1| nucleoside diphosphate kinase regulator [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 159

 Score = 52.5 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 7/142 (4%)

Query: 18  ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVID 77
           EL   +Q      ++  ++    GD  + AE     E       R+ EL+  +       
Sbjct: 19  ELERLRQRRDRLEVEVRNDRGMVGDHGDAAEAIQRAEELVGLSDRINELDRRL----RTG 74

Query: 78  ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV---QSGLVSISSPIARALIGKE 134
            S         G T   +  + G+     ++   E      +   ++  SP+A+AL G +
Sbjct: 75  PSQPDASETLPGGTEVTLRFSDGEVVTMHVISIVEETPVGREGETLTARSPLAQALAGHK 134

Query: 135 LGDIISVNAPGGEKTYEILQVL 156
            GD ++ + P GE   E++ V 
Sbjct: 135 AGDTVTYSTPQGEDQVELIAVK 156


>gi|330503391|ref|YP_004380260.1| acetyltransferase [Pseudomonas mendocina NK-01]
 gi|328917677|gb|AEB58508.1| acetyltransferase [Pseudomonas mendocina NK-01]
          Length = 306

 Score = 52.5 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 2/93 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE+ + RA V+    ++ + +   +   L      ++    +V  ++AD  +G  S+ S
Sbjct: 206 ELEHELERAIVVKPEQVARNVVTMNSRALLQ--LDDEEIEVALVYPEDADGSAGKHSVCS 263

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            I  A++G + GD I        +  EI +VL+
Sbjct: 264 DIGAAILGYQEGDAIDWRISDRTRRIEIRKVLY 296


>gi|120608986|ref|YP_968664.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1]
 gi|120587450|gb|ABM30890.1| GreA/GreB family elongation factor [Acidovorax citrulli AAC00-1]
          Length = 303

 Score = 52.1 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 38  RAYGDLSENAEYQAAKELQN---LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSL 94
            A        E   A+  Q      +  + ELE+ I RA V+D   ++ D +   +   L
Sbjct: 173 AAGAPAIHVTEIDEARLRQLVAFHQDPEIFELEHEIERATVVDPRQVAEDVVTMNSRALL 232

Query: 95  VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
             +   +     +V  Q+AD  +G  S+ S +  A++G   GD          +   + +
Sbjct: 233 --EVDNETVEVALVYPQDADEAAGRHSVCSGLGTAILGYREGDAFRWRIADRTRRIRVRK 290

Query: 155 VLW 157
           VL+
Sbjct: 291 VLY 293


>gi|88797807|ref|ZP_01113395.1| nucleoside diphosphate kinase regulator [Reinekea sp. MED297]
 gi|88779484|gb|EAR10671.1| nucleoside diphosphate kinase regulator [Reinekea sp. MED297]
          Length = 142

 Score = 52.1 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            LE+ + RA V   + +  D +  G+ V     +SG     ++V   E       +S+ S
Sbjct: 33  WLESELDRATVCLPNELPADAVQLGSVVRFQLSSSGQVYLRELVLP-EQRQHDEHISVLS 91

Query: 125 PIARALIGKELGDIISVN-APGGEKTYEILQVL 156
           P+  AL+G  +GD I+   +PG   T  IL V 
Sbjct: 92  PVGMALLGLRVGDEIAWPSSPGQSTTVRILDVK 124


>gi|332527739|ref|ZP_08403780.1| nucleoside diphosphate kinase regulator [Rubrivivax benzoatilyticus
           JA2]
 gi|332112137|gb|EGJ12113.1| nucleoside diphosphate kinase regulator [Rubrivivax benzoatilyticus
           JA2]
          Length = 139

 Score = 52.1 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 2/93 (2%)

Query: 57  NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
            ++E       +++  AEV+D  T+  D +   + V L         +  +    +    
Sbjct: 30  RVSEALADHARDMLDLAEVVDPKTLPADVVTMRSRVVLSRGGEL--LDLTLCYPDDQPDG 87

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKT 149
              VS+ SP+  AL+G  +GD I    P GE+ 
Sbjct: 88  IERVSVFSPLGMALLGARVGDSIGWRGPAGEEH 120


>gi|291333579|gb|ADD93273.1| hypothetical protein [uncultured archaeon MedDCM-OCT-S08-C92]
          Length = 437

 Score = 52.1 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 61/152 (40%), Gaps = 12/152 (7%)

Query: 12  FDKIQQELRWRQ--QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
            +K++++L + Q          +   +A       E                   ELE  
Sbjct: 289 HEKLKEDLEFLQGTTIGSEEDTERKIKAMEIEIPKEKEMADEMNAEAQSLSDSNKELEEK 348

Query: 70  ITRAE------VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
           I  A        +   + S    + G ++++       +  +++V  ++A++  G + +S
Sbjct: 349 IKDARIESLNKPVAAGSSSSTGASIGTSLTVKNLTKETEHTFELVNQEDANIPQGKIPLS 408

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +PI ++L G + GD + V    G  T+++L+V
Sbjct: 409 NPIGKSLEGSKEGDEVKV----GPTTFKVLKV 436


>gi|238751385|ref|ZP_04612878.1| Regulator of nucleoside diphosphate kinase [Yersinia rohdei ATCC
           43380]
 gi|238710443|gb|EEQ02668.1| Regulator of nucleoside diphosphate kinase [Yersinia rohdei ATCC
           43380]
          Length = 152

 Score = 52.1 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++    +  D +   + V   +  S ++    +V        +  +S+ +P
Sbjct: 50  LNEELDRAEILPPHAIPADVVTMNSRVRFRDLKSQEEHIRTLVYPASLKDSNEQLSVMAP 109

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  + D I+   P G E    +L++L+
Sbjct: 110 LGAALLGLHINDEINWTLPSGDEARIIVLELLY 142


>gi|124267233|ref|YP_001021237.1| regulator of nucleoside diphosphate kinase [Methylibium
           petroleiphilum PM1]
 gi|124260008|gb|ABM95002.1| regulator of nucleoside diphosphate kinase [Methylibium
           petroleiphilum PM1]
          Length = 136

 Score = 52.1 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           +E ++    V+    +  D +   + V L +  SG +    +    +A+  +G VS+ SP
Sbjct: 34  IEPLLDACTVVPSRQVRPDVVTMYSQVLLQDLASGLRSRLTLCYPADAEPAAGFVSVLSP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  +L+G  +G +   + P GE ++ E++ +L+
Sbjct: 94  VGCSLLGLTVGAVARWSTPSGEARSAEVVALLF 126


>gi|296164629|ref|ZP_06847196.1| transcription elongation factor GreA [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295900048|gb|EFG79487.1| transcription elongation factor GreA [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 177

 Score = 52.1 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 45/143 (31%), Gaps = 12/143 (8%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + +IP+T + + ++Q EL   +      +           D   +   +           
Sbjct: 1   MTRIPITPRHYRRLQDELTALRARRSVEVP----------DDYLDYGARGGMRPSARQRR 50

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
                  +   A   D +         G  +++    +G+ +   +      D    + S
Sbjct: 51  IREIERLLGAAAVRDDPAGERI--AGPGMVLTIRYDATGETETLLLGRRGAEDADIKVYS 108

Query: 122 ISSPIARALIGKELGDIISVNAP 144
           ++SP+ R + G   G+      P
Sbjct: 109 MASPLGRCIAGARPGEQRIYAIP 131


>gi|322834683|ref|YP_004214710.1| GreA/GreB family elongation factor [Rahnella sp. Y9602]
 gi|321169884|gb|ADW75583.1| GreA/GreB family elongation factor [Rahnella sp. Y9602]
          Length = 136

 Score = 51.7 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++    +  D +   + V   E   G++    +V           +S+ +P
Sbjct: 34  LNEELDRAEILPPEQIPADVVTMNSKVRFTEGKDGEEHIRTLVYPAALKDSKEQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           +  AL+G   G  I+   P GE    E+L++L+
Sbjct: 94  LGAALLGLRTGGSITWEMPNGENSRIEVLELLY 126


>gi|325168694|ref|YP_004280484.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3]
 gi|325064417|gb|ADY68106.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3]
          Length = 137

 Score = 51.7 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +L   + RA+V++      D +A G+TVS +    G ++   +     AD++  +VS+ +
Sbjct: 38  KLLIELERADVVEDDQFPADAVAVGSTVSYL-TEGGARRTVTLCYPGLADIERSMVSVLT 96

Query: 125 PIARALIGKELGDIISVNAPGG-EKTYEILQV 155
           PI  AL+G   G  I      G      +L+V
Sbjct: 97  PIGAALLGLSPGQQIEWKGRDGHSHKLTVLEV 128


>gi|167647566|ref|YP_001685229.1| GreA/GreB family elongation factor [Caulobacter sp. K31]
 gi|167349996|gb|ABZ72731.1| GreA/GreB family elongation factor [Caulobacter sp. K31]
          Length = 141

 Score = 51.7 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSIS 123
             L + + RA +++        +  G+ +   + ++G  ++ ++   ++A +    +S+ 
Sbjct: 47  RVLAHEMARALIVEPGQAPLPFVRIGSRIDYRDLSNGQTRSVRLSLPRDASIDDNRISVL 106

Query: 124 SPIARALIGKELGDIISVN-APGGEKTYEILQV 155
           SP+  AL+G   G       A G  +  +++ V
Sbjct: 107 SPVGAALVGMTAGQAFHWTDAEGRPRGVQVIAV 139


>gi|56459737|ref|YP_155018.1| GreA/GreB family transcription elongation factor [Idiomarina
           loihiensis L2TR]
 gi|56178747|gb|AAV81469.1| Transcription elongation factor greA/greB family [Idiomarina
           loihiensis L2TR]
          Length = 151

 Score = 51.7 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 2/110 (1%)

Query: 46  NAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY 105
           N  +Q A +   ++   ++ L N +  +E  +   +   RI  GA+  L    + ++   
Sbjct: 34  NPIFQEAGQQMLIDPVELSILLNRLEFSESKEA--LIEKRIRVGASAVLRNVKTMEQVKV 91

Query: 106 QIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           ++V  + AD  + LVS  SP+   L+G  +GDI +V        +E+L V
Sbjct: 92  RLVPPELADTDNYLVSFISPLGSTLLGLRVGDIATVIVKDISIKWEVLTV 141


>gi|242241060|ref|YP_002989241.1| nucleoside diphosphate kinase regulator [Dickeya dadantii Ech703]
 gi|242133117|gb|ACS87419.1| GreA/GreB family elongation factor [Dickeya dadantii Ech703]
          Length = 136

 Score = 51.7 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA ++    +  D +   + V   +  + ++    +V        S  +S+ +P
Sbjct: 34  LNAELDRAHIVAPVEIPPDVVTMNSRVRFRDLLTCEEHIRTLVYPATLKDSSEQISVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +G  I+   P G E   E++++L+
Sbjct: 94  LGAALLGMHVGKTINWPLPNGEETRIEVMELLY 126


>gi|291300234|ref|YP_003511512.1| GreA/GreB family elongation factor [Stackebrandtia nassauensis DSM
           44728]
 gi|290569454|gb|ADD42419.1| GreA/GreB family elongation factor [Stackebrandtia nassauensis DSM
           44728]
          Length = 152

 Score = 51.7 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 12/158 (7%)

Query: 1   MVDKI-PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
           M  K  P+ +     ++Q+L   +  ER R+   +++    G          A+ELQ + 
Sbjct: 1   MAGKSAPIGANARHTLEQDLAEVRA-ERDRVAATLTDTDTTG-----DSADQAQELQRVT 54

Query: 60  EGRMAELENIITRAE---VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQ 116
           + ++ +       A        +    D +  G+TV++   +   +    I    + D Q
Sbjct: 55  DLQLLDARVEKLTARLDASATATQGRTDLVDVGSTVTIRFSDDTTE-TLHIGEIADVDDQ 113

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
             LV+  SP+ RAL+G   GD +S N P G  T  +  
Sbjct: 114 L-LVTAGSPLGRALLGHRAGDTVSYNTPSGHATAVVES 150


>gi|51892882|ref|YP_075573.1| putative transcription elongation factor [Symbiobacterium
           thermophilum IAM 14863]
 gi|51856571|dbj|BAD40729.1| putative transcription elongation factor [Symbiobacterium
           thermophilum IAM 14863]
          Length = 154

 Score = 51.7 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 40/72 (55%)

Query: 84  DRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNA 143
           D +     V+LV++  G ++ Y +V  +E D   G +S  SP+  AL+ K + D + ++A
Sbjct: 76  DVVFMDVPVTLVDETDGTEEVYTVVLPEEGDPAKGHISCLSPLGLALLLKRVNDRVVIDA 135

Query: 144 PGGEKTYEILQV 155
           PGG  TY I  V
Sbjct: 136 PGGRFTYRIAAV 147


>gi|251791378|ref|YP_003006099.1| nucleoside diphosphate kinase regulator [Dickeya zeae Ech1591]
 gi|247539999|gb|ACT08620.1| GreA/GreB family elongation factor [Dickeya zeae Ech1591]
          Length = 136

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA+++    +  D +   + V   +  + ++    +V           +S+ +P
Sbjct: 34  LSEELDRADIVQPIEIPADVVTMNSRVRFRDLLTAEEHIRTLVYPAGLKDSREQISVMAP 93

Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
           +  AL+G  +G+ I+   P G+KT  E++++L+
Sbjct: 94  LGAALLGMHVGNSIAWPLPNGDKTRIEVMELLY 126


>gi|264677460|ref|YP_003277366.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2]
 gi|262207972|gb|ACY32070.1| GreA/GreB family elongation factor [Comamonas testosteroni CNB-2]
          Length = 305

 Score = 51.7 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
             E +  +LE+ I RA V+D   + G+ +   +   L  +         +V  ++AD  +
Sbjct: 198 EWESQAVDLEHEIERAAVVDARQVQGNVVTMNSKALL--RLDEVAVEVALVYPEDADDSA 255

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           G +S+ S +  A++G   GD I            I +VL+
Sbjct: 256 GRLSVFSGVGTAILGCREGDRIDWRILDRTCHIRIEKVLY 295


>gi|297563795|ref|YP_003682768.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848244|gb|ADH70262.1| GreA/GreB family elongation factor [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 162

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 5/141 (3%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            +T + ++++++ELR  +    P         R  GD+     Y        + + R+  
Sbjct: 8   WMTREAYERLREELRTLRA--LPDDDPGTGADRGAGDVLPAPRYI---HDPAVRQARVHT 62

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           +E +++ A V + +   G            +    D+     V D     +  + S  SP
Sbjct: 63  IERLLSEAVVDEAAPDDGIAAPGKVLTIRYDGEEEDEVFLLGVRDASVADRMTVYSPESP 122

Query: 126 IARALIGKELGDIISVNAPGG 146
           +  AL+G   G+  +  AP G
Sbjct: 123 LGAALVGARQGERRTFTAPRG 143


>gi|307543993|ref|YP_003896472.1| nucleoside diphosphate kinase regulator [Halomonas elongata DSM
           2581]
 gi|307216017|emb|CBV41287.1| nucleoside diphosphate kinase regulator [Halomonas elongata DSM
           2581]
          Length = 136

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE  + R EV++   +  D I+  + V   +     +    +V     D     VS+ +P
Sbjct: 33  LEEELERGEVLEPEQIPADVISMNSRVRFTDLTREREIVKTLVYPHALDATEDGVSVMAP 92

Query: 126 IARALIGKELGDII-SVNAPGGEKT-YEILQVLW 157
           +  AL+G  +GD+I     PGG++T   +  +LW
Sbjct: 93  VGAALLGLHVGDVIEEWPLPGGKQTSLRVDAILW 126


>gi|148555405|ref|YP_001262987.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
 gi|148500595|gb|ABQ68849.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
          Length = 166

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 23  QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMS 82
           +   RP I    SEA    +++  AE                 L   I RA +   + + 
Sbjct: 34  KAGRRPAIHMIDSEAETLANMAVAAEE--------RIPQVSELLLEEIDRATLYKAARIP 85

Query: 83  GDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVN 142
            D +   + V  V++ +G  +  Q+V  ++AD+ +G VSI + +   LIG   G  I   
Sbjct: 86  ADVVTMHSHVEFVDEANGTSRTVQLVYPKDADIDAGRVSILTLVGAGLIGLREGQSILWP 145

Query: 143 APGGEKT-YEILQV 155
              G +    I +V
Sbjct: 146 GRDGHRRLLTITRV 159


>gi|304412090|ref|ZP_07393700.1| transcription elongation factor GreA/GreB domain-containing
          protein [Shewanella baltica OS183]
 gi|307305985|ref|ZP_07585731.1| transcription elongation factor GreA/GreB domain protein
          [Shewanella baltica BA175]
 gi|304349640|gb|EFM14048.1| transcription elongation factor GreA/GreB domain-containing
          protein [Shewanella baltica OS183]
 gi|306911478|gb|EFN41904.1| transcription elongation factor GreA/GreB domain protein
          [Shewanella baltica BA175]
          Length = 49

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY 49
          +    +T +G+  + +EL++  +E RP+I   + EA A GD SENA++
Sbjct: 1  MKAHLITRQGWQTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADF 48


>gi|238764586|ref|ZP_04625532.1| Regulator of nucleoside diphosphate kinase [Yersinia kristensenii
           ATCC 33638]
 gi|238697176|gb|EEP89947.1| Regulator of nucleoside diphosphate kinase [Yersinia kristensenii
           ATCC 33638]
          Length = 152

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++  + +  D +   + V   + NS ++    +V        +  +S+ +P
Sbjct: 50  LNEELDRAEILPPNAIPADVVTMNSRVRFRDLNSQEEHIRTLVYPASLKDSNEQLSVMAP 109

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  + + IS   PGG E    +L++L+
Sbjct: 110 LGAALLGLHVNNEISWKLPGGDEARIIVLELLY 142


>gi|94498026|ref|ZP_01304589.1| nucleoside diphosphate kinase regulator [Sphingomonas sp. SKA58]
 gi|94422461|gb|EAT07499.1| nucleoside diphosphate kinase regulator [Sphingomonas sp. SKA58]
          Length = 156

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 29/153 (18%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT++G    ++++                EA   G + E+    AAK+ +      + 
Sbjct: 27  NWVTARGMRLTREKVADL-------------EAVDSGPMDED----AAKKHKR----ELR 65

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  A+         D +AFG  V+  +          +VGD EAD   G +S SS
Sbjct: 66  YWRTRLATAQQQPAPDG--DVVAFGTRVTYRQSGQDKSVV--LVGDDEADPHDGRISFSS 121

Query: 125 PIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
           P+ARA++  E+G+ +      G+    EI+ + 
Sbjct: 122 PVARAMMDAEVGEKVDF---AGKADAIEIIGIE 151


>gi|311108965|ref|YP_003981818.1| GNAT family acetyltransferase [Achromobacter xylosoxidans A8]
 gi|310763654|gb|ADP19103.1| acetyltransferase, GNAT family protein/transcription elongation
           factor, GreA/GreB family protein [Achromobacter
           xylosoxidans A8]
          Length = 320

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 2/93 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           ELE+ + RA V+    ++ + +   +   L      ++    +V  ++AD  +G  S+ S
Sbjct: 220 ELEHELERAIVVTPQQVARNVVTMNSRALLQ--LDDEEMEVALVYPEDADSSAGKFSVCS 277

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            +  A++G + GD I        +   I +VL+
Sbjct: 278 DVGAAILGYQEGDAIDWRISDRTRRIGIRKVLY 310


>gi|307129058|ref|YP_003881074.1| regulator of nucleoside diphosphate kinase [Dickeya dadantii 3937]
 gi|306526587|gb|ADM96517.1| regulator of nucleoside diphosphate kinase [Dickeya dadantii 3937]
          Length = 136

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA+++    + GD +   + V   +  + ++    +V           +S+ +P
Sbjct: 34  LSEELDRADIVQPVEIPGDVVTMNSRVRFRDLLTTEEHIRTLVYPAGLKDSREQISVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +G+ I+   P G E   E++++L+
Sbjct: 94  LGAALLGMHVGNSIAWPLPNGEETRIEVMELLY 126


>gi|260771051|ref|ZP_05879979.1| hypothetical protein VFA_004117 [Vibrio furnissii CIP 102972]
 gi|260613940|gb|EEX39131.1| hypothetical protein VFA_004117 [Vibrio furnissii CIP 102972]
          Length = 138

 Score = 50.5 bits (119), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  L+   T A        +  RIA G TV LV+     +    +V   +    SG ++ 
Sbjct: 29  LRLLQLQHTCALQK--RCRNTTRIALGDTVHLVDTERYHQYRMTLVASHQHQPLSGQLAW 86

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            S +  AL+G+   D++ +   G  + Y I ++++
Sbjct: 87  DSYLGSALMGRARDDVLELRILGRSRRYAITEIVY 121


>gi|271498857|ref|YP_003331882.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
 gi|270342412|gb|ACZ75177.1| GreA/GreB family elongation factor [Dickeya dadantii Ech586]
          Length = 136

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RA+++    M  D +   + V   +  + ++    +V           +S+ +P
Sbjct: 34  LSEELDRADIVQPVEMPADVVTMNSRVRFRDLLTAEEHIRTLVYPASLKDSREQISVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +G+ I+   P G E   E++++L+
Sbjct: 94  LGAALLGMHVGNSIAWPLPNGEETRIEVMELLY 126


>gi|254822488|ref|ZP_05227489.1| nucleoside diphosphate kinase regulator [Mycobacterium
           intracellulare ATCC 13950]
          Length = 159

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 67/160 (41%), Gaps = 8/160 (5%)

Query: 1   MVDKIPVTSKGFDK--IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
           M  K P ++    +  ++ EL   +Q       +  ++    GD  + AE     +   +
Sbjct: 1   MSKKAP-SAADAARNNLEAELDRLRQRRDRLEAEVKNDRGMVGDHGDAAEAIQRADELVV 59

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV--Q 116
              R+ EL+    R       + S   +  G  V+L   +      + I   +E  V  +
Sbjct: 60  LSDRINELDR---RLRAGPPDSDSSATLPGGTEVTLRFADGEVVTMHVISIVEETPVGRE 116

Query: 117 SGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +  ++  SP+A+AL G++ GD ++ + P GE   E++ V 
Sbjct: 117 AETLTARSPLAQALAGRKPGDTVTYSTPQGENQVELIAVK 156


>gi|298489352|ref|ZP_07007366.1| Regulator of nucleoside diphosphate kinase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298156143|gb|EFH97249.1| Regulator of nucleoside diphosphate kinase [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 135

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   + ++V  Q+A    G VS+ +P+  AL+G ++G  I   AP
Sbjct: 54  VVTMNSRVHCREEVSGKDYHLKLVYPQDA-GADGTVSVLAPMGSALLGLQVGQHIDWPAP 112

Query: 145 G-GEKTYEILQVLW 157
           G       +L V +
Sbjct: 113 GCKTLKLTLLAVEY 126


>gi|326315158|ref|YP_004232830.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323371994|gb|ADX44263.1| GreA/GreB family elongation factor [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 303

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
             +  + ELE+ I RA V+D   ++ D +   +   L  +  G+     +V  Q+AD  +
Sbjct: 196 HQDPEIFELEHEIERATVVDPRQVAEDVVTMNSRALL--EVDGETVEVALVYPQDADEAA 253

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           G  S+ S +  A++G   GD          +   + +VL+
Sbjct: 254 GRHSVCSGLGTAILGYREGDAFRWRIADRTRRIRVRKVLY 293


>gi|302530802|ref|ZP_07283144.1| predicted protein [Streptomyces sp. AA4]
 gi|302439697|gb|EFL11513.1| predicted protein [Streptomyces sp. AA4]
          Length = 155

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 57/148 (38%), Gaps = 10/148 (6%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           ++     ++++E+   +  +R  +     E    GD ++ A+     E     + ++A++
Sbjct: 12  LSEAARRQLEKEIADLRA-QREALSPQPGEQERTGDAADQADVIDRAEAAARLDRQIADV 70

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
                 A++   +  S                  ++     +  ++AD     ++  SP+
Sbjct: 71  T-----AKLEHGAYDSSLLPDGTRVSLRFSDGDEEEFTVVTLPGEDADA----ITSDSPL 121

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQ 154
             AL   + G+ IS   P G+ T  +L+
Sbjct: 122 GLALATAKAGEEISYRTPRGQATATVLK 149


>gi|315178622|gb|ADT85536.1| hypothetical protein/transcription elongation factor GreA [Vibrio
           furnissii NCTC 11218]
          Length = 138

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +  L+   T A        +  RIA G TV LV+     +    +V   +    SG ++ 
Sbjct: 29  LRLLQLQHTCALQK--RCRNATRIALGDTVHLVDTERYHQYRMTLVASHQHQPLSGQLAW 86

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            S +  AL+G+   D++ +   G  + Y I ++++
Sbjct: 87  DSYLGSALMGRARDDVLELRILGRSRRYAITEIVY 121


>gi|297624445|ref|YP_003705879.1| transcription elongation factor GreA/GreB domain-containing protein
            [Truepera radiovictrix DSM 17093]
 gi|297165625|gb|ADI15336.1| transcription elongation factor GreA/GreB domain protein [Truepera
            radiovictrix DSM 17093]
          Length = 1819

 Score = 50.2 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 35/71 (49%)

Query: 85   RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
             +  G  V   + N   +     +    +  + G+++  +P+ARAL+GK + ++ +++ P
Sbjct: 1745 VVRVGDFVRYCDANDLGQVFTVQITVGTSKPEMGIINYQTPVARALLGKRVNEVATIHLP 1804

Query: 145  GGEKTYEILQV 155
             G     +L++
Sbjct: 1805 LGTTEVIVLEI 1815


>gi|240170744|ref|ZP_04749403.1| transcription elongation factor GreA [Mycobacterium kansasii ATCC
           12478]
          Length = 159

 Score = 50.2 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 52/158 (32%), Gaps = 14/158 (8%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            ++I +T +   ++  EL   + +                   +  +Y A    +     
Sbjct: 4   TERIRMTQQDHSRLLSELIALRSQHAVEAPD------------DFLDYHANVIARYCARK 51

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
                   +  + ++ + T        G  V++  + +G  + + +      +    + S
Sbjct: 52  ARIREIEQLLSSAIVGVDTGGDVIAQPGMVVTISYEATGQTETFLLGRRGAQNADIPVYS 111

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYE--ILQVLW 157
             SP+ RA+ G  LG+    + P G       I  V +
Sbjct: 112 TLSPLGRAITGARLGEQRVYSIPQGADLVVTLIEAVPY 149


>gi|41406335|ref|NP_959171.1| nucleoside diphosphate kinase regulator [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41394683|gb|AAS02554.1| hypothetical protein MAP_0237c [Mycobacterium avium subsp.
           paratuberculosis K-10]
          Length = 158

 Score = 50.2 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 5/149 (3%)

Query: 10  KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
                ++ EL   +Q      ++  ++    GD  + AE     +   +   R+ EL+  
Sbjct: 11  AARKNLEAELDRLRQRRDRLEVEVKNDRGMVGDHGDAAEAIQRADELVVLSDRINELDR- 69

Query: 70  ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--LVSISSPIA 127
             R       + +   +  G  V+L   +      + I   +E  V      ++  SP+A
Sbjct: 70  --RLRAGPPDSDASATLPGGTEVTLRFADGEVVTMHVISIVEETPVGREGETLTARSPLA 127

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156
           +AL G++ GD ++   P GEK  E++ V 
Sbjct: 128 QALAGRQPGDTVTYPTPQGEKQVELIAVK 156


>gi|118466969|ref|YP_879527.1| nucleoside diphosphate kinase regulator [Mycobacterium avium 104]
 gi|118168256|gb|ABK69153.1| nucleoside diphosphate kinase regulator [Mycobacterium avium 104]
          Length = 158

 Score = 50.2 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 1/147 (0%)

Query: 10  KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
                ++ EL   +Q      ++  ++    GD  + AE     +   +   R+ EL+  
Sbjct: 11  AARKNLEAELDRLRQRRDRLEVEVKNDRGMVGDHGDAAEAIQRADELVVLSDRINELDRR 70

Query: 70  ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
           +  A   D  T +        T+   +          IV +     +   ++  SP+A+A
Sbjct: 71  LR-AGPPDADTSATLPGGTEVTLRFADGEVVTMHVISIVEETPVGREGETLTARSPLAQA 129

Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156
           L G++ GD ++   P GEK  E++ V 
Sbjct: 130 LAGRQPGDTVTYPTPQGEKQVELIAVK 156


>gi|255531734|ref|YP_003092106.1| transcription elongation factor [Pedobacter heparinus DSM 2366]
 gi|255344718|gb|ACU04044.1| Transcription elongation factor [Pedobacter heparinus DSM 2366]
          Length = 125

 Score = 49.8 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 45/103 (43%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
             + L++    +LE  +  A  I    +  D +     V + E  +G + NY +V   +A
Sbjct: 20  RRRKLSKYNQEKLEQELRNARQILSKDIPADVVTVNTRVRVKELETGAEFNYTLVPPAKA 79

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             +   +SI SPI  A++G   G  +    P G K Y I +V 
Sbjct: 80  RNKHNTLSILSPIGVAMVGYSQGSELKWEMPEGIKAYRIEEVT 122


>gi|302525225|ref|ZP_07277567.1| GreA/GreB family elongation factor [Streptomyces sp. AA4]
 gi|302434120|gb|EFL05936.1| GreA/GreB family elongation factor [Streptomyces sp. AA4]
          Length = 148

 Score = 49.8 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 4/102 (3%)

Query: 46  NAEYQAAKELQNLNEGRMAELENIITRAEV-IDISTMSGDRIAFGATVSLVEKNSGDKKN 104
           + +     E +   + R+ +L++++  A V  D             TV   +      + 
Sbjct: 30  DLDGDDQFERRQHRQARIRQLQDLLQNAVVGEDPPDDGIAEPGMVLTVRYDDGG---VET 86

Query: 105 YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
           + +    E      + S  SP+ RAL G + G+      P G
Sbjct: 87  FLLAARDEVGGGLEVYSPDSPLGRALHGAKPGEQREYEVPSG 128


>gi|254773292|ref|ZP_05214808.1| nucleoside diphosphate kinase regulator [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 158

 Score = 49.8 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 59/147 (40%), Gaps = 1/147 (0%)

Query: 10  KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
                ++ EL   +Q      ++  ++    GD  + AE     +   +   R+ EL+  
Sbjct: 11  AARKNLEAELDRLRQRRDRLEVEVKNDRGMVGDHGDAAEAIQRADELVVLSDRINELDRR 70

Query: 70  ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
           +  A   D  T +        T+   +      +   IV +     +   ++  SP+A+A
Sbjct: 71  LR-AGPPDADTSATLPGGTEVTLRFADGEVVTMQVISIVEETPVGREGETLTARSPLAQA 129

Query: 130 LIGKELGDIISVNAPGGEKTYEILQVL 156
           L G++ GD ++   P GEK  E++ V 
Sbjct: 130 LAGRQPGDTVTYPTPQGEKQVELIAVK 156


>gi|325528774|gb|EGD05833.1| GreA/GreB family elongation factor [Burkholderia sp. TJI49]
          Length = 132

 Score = 49.4 bits (116), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ ++ RA+++    +  + +   + ++L+++ + ++  + IV    A+++ G +++ SP
Sbjct: 30  LDTLLERADIVRPDAIKANVVTMNSQITLLDETTQEQATWTIVYPDAANLELGRLNVFSP 89

Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
           +  AL+G + G ++ V  P G +   ++ ++++
Sbjct: 90  VGMALLGTQRGQLVKVTQPSGAEKLMKVAEIVF 122


>gi|264679251|ref|YP_003279158.1| hypothetical protein CtCNB1_3116 [Comamonas testosteroni CNB-2]
 gi|262209764|gb|ACY33862.1| hypothetical protein CtCNB1_3116 [Comamonas testosteroni CNB-2]
          Length = 160

 Score = 49.4 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 61/158 (38%), Gaps = 7/158 (4%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK+ +  +   ++ ++L   +Q  R     A  E     +   +     A  L      
Sbjct: 1   MDKLLLQQQVLKRLAEDLVQVEQAARVAHEAATHEEN-IAENKYDTLGLEASYLAAGQAR 59

Query: 62  RMAELENIITRAEVIDISTMSGDR-IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-- 118
           R   +   +           +  + I  GA + LV+ +   ++ +         + +G  
Sbjct: 60  RAEAIRQAMANWRQFRPQPYNASKGIQLGALICLVDSDDKQQQIFLGPDGGNMKLFNGAE 119

Query: 119 ---LVSISSPIARALIGKELGDIISVNAPGGEKTYEIL 153
              ++S  +P+ RA++GK  GD +S+      + +E+L
Sbjct: 120 LIQVISSKAPLGRAMLGKCEGDEVSIQVAPVRQQFEVL 157


>gi|134293951|ref|YP_001117687.1| GreA/GreB family elongation factor [Burkholderia vietnamiensis G4]
 gi|134137108|gb|ABO58222.1| GreA/GreB family elongation factor [Burkholderia vietnamiensis G4]
          Length = 132

 Score = 49.4 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ ++ RA+++  + +  + +   + ++L+++ S ++  + IV    A+++ G +++ SP
Sbjct: 30  LDTLLERADIVQPNAVKANVVTMNSQITLLDETSQEQTTWTIVYPDAANLELGRLNVFSP 89

Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
           +  AL+G + G  + V  P G +   ++  +++
Sbjct: 90  VGMALLGTQRGQSVKVMQPSGIEKLMKVAAIVF 122


>gi|224370462|ref|YP_002604626.1| GreA2 [Desulfobacterium autotrophicum HRM2]
 gi|223693179|gb|ACN16462.1| GreA2 [Desulfobacterium autotrophicum HRM2]
          Length = 95

 Score = 49.0 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 119 LVSISSPIARALIGKELGDIISVNAP-GGEKTYEILQVLW 157
            +SI +P+  AL+G  +GD I    P GG     I ++++
Sbjct: 46  TISILAPVGSALLGLSIGDKIEWPKPGGGNLKVRITEIIY 85


>gi|146294926|ref|YP_001185350.1| GreA/GreB family elongation factor [Shewanella putrefaciens
          CN-32]
 gi|145566616|gb|ABP77551.1| GreA/GreB family elongation factor [Shewanella putrefaciens
          CN-32]
          Length = 66

 Score = 49.0 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 29/47 (61%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAE 48
          +    +T +G+  + +EL++  +E RP+I   + EA A GD SENA+
Sbjct: 1  MKAHLITRQGWLALDKELKYLWKEYRPQITLKVQEAAAQGDRSENAD 47


>gi|293606854|ref|ZP_06689202.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
 gi|292814706|gb|EFF73839.1| conserved hypothetical protein [Achromobacter piechaudii ATCC
           43553]
          Length = 140

 Score = 49.0 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
           A +I I  ++ D I   + V L+    GD+    +    +A++  G VS+ SP+  +LIG
Sbjct: 46  APIIPIEEVTPDIITMRSRVRLLNDK-GDEMVVTLCYPADANLAQGQVSVMSPLGLSLIG 104

Query: 133 KELGDIISVNAPGG-EKTYEILQVLW 157
              G +++  AP   E +  I ++L+
Sbjct: 105 SRTGQLVTWTAPNQTEHSASIEEILY 130


>gi|171321848|ref|ZP_02910748.1| GreA/GreB family elongation factor [Burkholderia ambifaria MEX-5]
 gi|171092867|gb|EDT38120.1| GreA/GreB family elongation factor [Burkholderia ambifaria MEX-5]
          Length = 132

 Score = 49.0 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 43  LSENAEYQAAK--ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
           L + +E   A+  +    N    A L+ ++ RA+++    +  + +   + ++L+++ S 
Sbjct: 5   LYQLSEVDVARLEKHAEHNPRFQAMLDTLLERADIVQPDAIKANVVTMNSQITLLDEASQ 64

Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
           ++  + IV    A+++ G +++ SP+  AL+G + G ++ V  P G +   ++  +++
Sbjct: 65  EQTTWTIVYPDAANLELGRLNVFSPVGMALLGTQRGQLVKVLQPSGVEKLMKVAAIVF 122


>gi|78061874|ref|YP_371782.1| GreA/GreB family elongation factor [Burkholderia sp. 383]
 gi|77969759|gb|ABB11138.1| GreA/GreB family elongation factor [Burkholderia sp. 383]
          Length = 132

 Score = 49.0 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ ++ RA+++    +  + +   + ++L+++ + ++  + IV    A+++ G +++ SP
Sbjct: 30  LDTLLERADIVQPDAIKANVVTMNSQITLLDEATQEQATWTIVYPDAANLELGRLNVFSP 89

Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
           +  AL+G + G ++ V  P G +   ++  +++
Sbjct: 90  VGMALLGTQRGQMVKVTQPSGAEKLMKVAAIVF 122


>gi|289208813|ref|YP_003460879.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix]
 gi|288944444|gb|ADC72143.1| GreA/GreB family elongation factor [Thioalkalivibrio sp. K90mix]
          Length = 137

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 37/90 (41%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE I +     D +   G  I  G  V L++  + +    ++   + A  + G +SI SP
Sbjct: 39  LEKIESETPHSDTTPRCGQVIQTGCCVRLLDLQTEETYLVELCEPEHAQPERGKISILSP 98

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           +   L+G     +  +        + ++++
Sbjct: 99  LGSRLLGLRKNSLAEITLLRSRLRFLVIEI 128


>gi|300088754|ref|YP_003759276.1| transcription elongation factor GreA/GreB domain-containing protein
            [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299528487|gb|ADJ26955.1| transcription elongation factor GreA/GreB domain protein
            [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 1597

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 37/72 (51%)

Query: 85   RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            ++    TV  V+  +   +   ++  ++++ + G ++I++PIARALIG  LG  +    P
Sbjct: 1522 KVEVEDTVVYVDIENPQVEKQALITCEKSNPEWGAININTPIARALIGATLGSTVEAKLP 1581

Query: 145  GGEKTYEILQVL 156
             G  +  I  + 
Sbjct: 1582 KGTVSLLIKDIK 1593


>gi|152982035|ref|YP_001353580.1| GreA family transcription elongation factor [Janthinobacterium sp.
           Marseille]
 gi|151282112|gb|ABR90522.1| transcription elongation factor, greA family [Janthinobacterium sp.
           Marseille]
          Length = 139

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
           +L +II+ + ++ +       +   +TVS    ++ + +   IV  Q+A+ Q  L+S  +
Sbjct: 35  QLIDIISTSIILPVDVQRKGYVTLYSTVSYSPVDTEEVRKLTIVCPQDANPQLALISALT 94

Query: 125 PIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
           PI  ALIG++    + V  P       +IL V 
Sbjct: 95  PIGLALIGRKALTTVEVALPSKRVEKLKILDVT 127


>gi|172063609|ref|YP_001811260.1| GreA/GreB family elongation factor [Burkholderia ambifaria MC40-6]
 gi|171996126|gb|ACB67044.1| GreA/GreB family elongation factor [Burkholderia ambifaria MC40-6]
          Length = 132

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 43  LSENAEYQAAK--ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
           L + +E   A+  +    N    A L+ ++ RA+++    +  + +   + ++L+++ S 
Sbjct: 5   LYQLSEVDVARLEKHAEHNPRFQAMLDTLLERADIVQPDAIKANVVTMNSQITLLDEASQ 64

Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
           ++  + IV    A+++ G +++ SP+  AL+G + G ++ V  P G +   ++  +++
Sbjct: 65  EQTTWTIVYPDAANLELGRLNVFSPVGMALLGTQRGQLVKVLQPSGAEKLMKVAAIVF 122


>gi|331089361|ref|ZP_08338261.1| hypothetical protein HMPREF1025_01844 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330405424|gb|EGG84959.1| hypothetical protein HMPREF1025_01844 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 101

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 36/77 (46%)

Query: 78  ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
                 D I    TV +  ++  + + Y+IV        +GLVSI SP+ +AL+G + GD
Sbjct: 9   EDESKEDEIGLNNTVEVYCEDDEEVETYRIVTSVRGSSLNGLVSIESPLGKALLGHKEGD 68

Query: 138 IISVNAPGGEKTYEILQ 154
            + +        Y I++
Sbjct: 69  RVFIKVNDDFGYYVIVK 85


>gi|115358874|ref|YP_776012.1| GreA/GreB family elongation factor [Burkholderia ambifaria AMMD]
 gi|170700327|ref|ZP_02891339.1| GreA/GreB family elongation factor [Burkholderia ambifaria
           IOP40-10]
 gi|115284162|gb|ABI89678.1| GreA/GreB family elongation factor [Burkholderia ambifaria AMMD]
 gi|170134761|gb|EDT03077.1| GreA/GreB family elongation factor [Burkholderia ambifaria
           IOP40-10]
          Length = 132

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 43  LSENAEYQAAK--ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSG 100
           L + +E   A+  +    N    A L+ ++ RA+++    +  + +   + ++L+++ S 
Sbjct: 5   LYQLSEVDVARLEKHAEHNPRFQAMLDTLLERADIVQPDAIKANVVTMNSQITLLDEASQ 64

Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
           ++  + IV    A+++ G +++ SP+  AL+G + G ++ V  P G +   ++  +++
Sbjct: 65  EQATWTIVYPDAANLELGRLNVFSPVGMALLGTQRGQLVKVLQPSGAEKLMKVAAIVF 122


>gi|254254276|ref|ZP_04947593.1| Prokaryotic transcription elongation factor GreA/GreB [Burkholderia
           dolosa AUO158]
 gi|124898921|gb|EAY70764.1| Prokaryotic transcription elongation factor GreA/GreB [Burkholderia
           dolosa AUO158]
          Length = 132

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 57/105 (54%), Gaps = 1/105 (0%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           +    N    A L+ ++ RA+++    +  + +   + ++LV++ + ++  + IV    A
Sbjct: 18  KHAEHNPRFQAMLDTLLERADIVRPDAIKANVVTMNSQITLVDEATQEQATWTIVYPDAA 77

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
           +++ G +++ SP+  AL+G + G ++ V  P G +   ++ ++++
Sbjct: 78  NLELGRLNVFSPVGMALLGTQRGQMVKVMQPSGIEKLMKVAEIVF 122


>gi|300724985|ref|YP_003714310.1| regulator of nucleoside diphosphate kinase [Xenorhabdus nematophila
           ATCC 19061]
 gi|297631527|emb|CBJ92234.1| regulator of nucleoside diphosphate kinase [Xenorhabdus nematophila
           ATCC 19061]
          Length = 136

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   + RAE++    +  D +   + +  ++  S +++   +V        +  +S+ +P
Sbjct: 34  LNEELDRAEILPPVDIPADVVTMNSEIRFIDLGSNEERVRTLVYPASLQDSTKQLSVMAP 93

Query: 126 IARALIGKELGDIISVNAPGG-EKTYEILQVLW 157
           +  AL+G  +   I+   P G E   ++L++L+
Sbjct: 94  LGAALLGLRVNGEITCQLPNGEETRIKVLEILY 126


>gi|221196032|ref|ZP_03569079.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2M]
 gi|221202706|ref|ZP_03575725.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2]
 gi|221176640|gb|EEE09068.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2]
 gi|221182586|gb|EEE14986.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD2M]
          Length = 132

 Score = 47.9 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
            A L+ ++ RAE++    +  + +   + ++L+++ + +   + IV    A+++ G +++
Sbjct: 27  QAMLDTLLERAEIVRSDAIKANVVTMNSQITLLDEATQEPATWTIVYPDAANLELGRLNV 86

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
            SP+  AL+G + G  + V  P G +   ++ ++++
Sbjct: 87  FSPVGMALLGTQRGQSVKVMQPSGTEKLMKVAEIVF 122


>gi|254250301|ref|ZP_04943621.1| Transcription elongation factor [Burkholderia cenocepacia PC184]
 gi|124876802|gb|EAY66792.1| Transcription elongation factor [Burkholderia cenocepacia PC184]
          Length = 132

 Score = 47.9 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ ++ RA+++  + +  + +   + ++L+++ + ++  + IV    A+++ G +++ SP
Sbjct: 30  LDTLLERADIVQPNAIKANVVTMNSQITLLDEATQEQATWTIVYPDSANLELGRLNVFSP 89

Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
           +  AL+G + G ++ V  P G +   ++  +++
Sbjct: 90  VGMALLGTQRGQMVKVMQPSGAEKLMKVASIVF 122


>gi|114049385|ref|YP_739935.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
 gi|113890827|gb|ABI44878.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
          Length = 56

 Score = 47.9 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 30/48 (62%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEY 49
          +    +T +G+  + +EL++  +E RP+I   + EA A GD SENA+Y
Sbjct: 1  MKAHLITRQGWMTLDKELKYLWKEYRPQITLKVQEAAAQGDRSENADY 48


>gi|161520489|ref|YP_001583916.1| GreA/GreB family elongation factor [Burkholderia multivorans ATCC
           17616]
 gi|189353320|ref|YP_001948947.1| regulator of nucleoside diphosphate kinase [Burkholderia
           multivorans ATCC 17616]
 gi|221209737|ref|ZP_03582718.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD1]
 gi|160344539|gb|ABX17624.1| GreA/GreB family elongation factor [Burkholderia multivorans ATCC
           17616]
 gi|189337342|dbj|BAG46411.1| regulator of nucleoside diphosphate kinase [Burkholderia
           multivorans ATCC 17616]
 gi|221170425|gb|EEE02891.1| GreA/GreB family elongation factor [Burkholderia multivorans CGD1]
          Length = 132

 Score = 47.9 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 53/96 (55%), Gaps = 1/96 (1%)

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
            A L+ ++ RA+++    +  + +   + ++L+++ + +   + IV    A+++ G +++
Sbjct: 27  QAMLDTLLERADIVRSDAIKANVVTMNSQITLLDEATQEPATWTIVYPDAANLELGRLNV 86

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
            SP+  AL+G + G  + V  P G +   ++ ++++
Sbjct: 87  FSPVGMALLGTQRGQSVKVMQPSGTEKLMKVAEIVF 122


>gi|108762537|ref|YP_628480.1| GreA/GreB domain-containing protein [Myxococcus xanthus DK 1622]
 gi|108466417|gb|ABF91602.1| GreA/GreB domain protein [Myxococcus xanthus DK 1622]
          Length = 171

 Score = 47.9 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 18/137 (13%)

Query: 29  RIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAF 88
              +    A  +G L+   + Q A+ +Q        EL+ +    +           +A 
Sbjct: 42  EKKEDGRAALEFGSLA-TGQAQRARRVQE-------ELQALTKFGQAEVPRFPRQGPVAL 93

Query: 89  GATV-SLVEKNSGDKKNYQIVGDQEA---------DVQSGLVSISSPIARALIGKELGDI 138
           GA V    E   G  +    V    A         D    +++ +SP+ RAL+G++ GD 
Sbjct: 94  GAIVDVSTEDEEGFSERTFFVLPAGAGTELTGPGGDGFLSVITPASPVGRALMGRKAGDT 153

Query: 139 ISVNAPGGEKTYEILQV 155
           + V   G  + + +L+V
Sbjct: 154 VEVMLAGEVREWTVLEV 170


>gi|330900741|gb|EGH32160.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 123

 Score = 47.9 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
            +   + V   E+ SG   + ++V  Q+A    G VS+ +P+  AL+G ++G  I   AP
Sbjct: 54  VVTMNSRVHCREEVSGKDYHLKLVYPQDA-GADGTVSVLAPMGSALLGLQIGQHIDWPAP 112

Query: 145 GGE 147
           GG+
Sbjct: 113 GGK 115


>gi|74316084|ref|YP_313824.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC
           25259]
 gi|74055579|gb|AAZ96019.1| GreA/GreB family elongation factor [Thiobacillus denitrificans ATCC
           25259]
          Length = 138

 Score = 47.9 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L + + RAE++    M  D +   + +  V + +G +    +V  ++       + +++P
Sbjct: 36  LRDELDRAEILRPEAMPADVVTMNSRIRFVVEPAGKEMEMTLVYPRDFTGSPDQLPVTTP 95

Query: 126 IARALIGKELGDIISVNAPGGEKT-YEILQVLW 157
              A++G  +G  I   AP G+K    I+ + +
Sbjct: 96  AGIAVLGLAVGQEIEWQAPNGQKVGARIVDLAY 128


>gi|107025987|ref|YP_623498.1| GreA/GreB family elongation factor [Burkholderia cenocepacia AU
           1054]
 gi|116692828|ref|YP_838361.1| GreA/GreB family elongation factor [Burkholderia cenocepacia
           HI2424]
 gi|170737905|ref|YP_001779165.1| GreA/GreB family elongation factor [Burkholderia cenocepacia MC0-3]
 gi|206563773|ref|YP_002234536.1| putative transcription elongation factor [Burkholderia cenocepacia
           J2315]
 gi|105895361|gb|ABF78525.1| GreA/GreB family elongation factor [Burkholderia cenocepacia AU
           1054]
 gi|116650828|gb|ABK11468.1| GreA/GreB family elongation factor [Burkholderia cenocepacia
           HI2424]
 gi|169820093|gb|ACA94675.1| GreA/GreB family elongation factor [Burkholderia cenocepacia MC0-3]
 gi|198039813|emb|CAR55787.1| putative transcription elongation factor [Burkholderia cenocepacia
           J2315]
          Length = 132

 Score = 47.5 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+ ++ RA+++    +  + +   + ++L+++ + ++  + IV    A+++ G +++ SP
Sbjct: 30  LDTLLERADIVQPDAIKANVVTMNSQITLLDEATQEQATWTIVYPDAANLELGRLNVFSP 89

Query: 126 IARALIGKELGDIISVNAPGGEKTY-EILQVLW 157
           +  AL+G + G ++ V  P G +   ++  +++
Sbjct: 90  VGMALLGTQRGQMVKVMQPSGAEKLMKVAAIVF 122


>gi|197103525|ref|YP_002128902.1| transcription elongation factor GreA/GreB family [Phenylobacterium
           zucineum HLK1]
 gi|196476945|gb|ACG76473.1| transcription elongation factor GreA/GreB family [Phenylobacterium
           zucineum HLK1]
          Length = 131

 Score = 47.1 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 86  IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISV--NA 143
           +   +TV+  +  +  ++  Q+V  + A      VSI SPI  ALIG   G +       
Sbjct: 58  VRLNSTVTYKDLRTRRRRIVQVVQPEHAHQDENRVSILSPIGAALIGLPEGSVFRWAERI 117

Query: 144 PGGEKTYEILQVL 156
            G  +  ++L V 
Sbjct: 118 DGATRAVKVLAVE 130


>gi|120554811|ref|YP_959162.1| GreA/GreB family elongation factor [Marinobacter aquaeolei VT8]
 gi|120324660|gb|ABM18975.1| GreA/GreB family elongation factor [Marinobacter aquaeolei VT8]
          Length = 128

 Score = 47.1 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE+ ++RA++  ++ M    +   + V  + +++G++    +V   E       VSI +P
Sbjct: 34  LEDELSRADMKPLADMPEGVVTMNSRVRFLNEDTGEEHEVALVYPHEVGDADHKVSILAP 93

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVL 156
              A++G  +G  I     G +    +++ V 
Sbjct: 94  AGAAMLGLSIGSSIEWPMKGRKPIHLKVIGVT 125


>gi|115373796|ref|ZP_01461089.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1]
 gi|310817548|ref|YP_003949906.1| transcription elongation factor [Stigmatella aurantiaca DW4/3-1]
 gi|115369195|gb|EAU68137.1| GreA/GreB family elongation factor [Stigmatella aurantiaca DW4/3-1]
 gi|309390620|gb|ADO68079.1| Transcription elongation factor [Stigmatella aurantiaca DW4/3-1]
          Length = 171

 Score = 47.1 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 14/135 (10%)

Query: 29  RIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAF 88
              +    A  YG L+   +   A+ L        A  E    R    D   +       
Sbjct: 42  EKKEDGRAAIEYGSLA-TGQSARARRLHEELGILAAFSEAGAPRFRRGDPVALGAVVD-- 98

Query: 89  GATVSLVEKNSGDKKNYQIVG--------DQEADVQSGLVSISSPIARALIGKELGDIIS 140
              V   ++   D++ + ++             D    +++ +SP+ RAL+G+  GD + 
Sbjct: 99  ---VRTEDEQGYDERTFFVLPVGAGTELTGPGGDGFLSVITPASPVGRALLGRRAGDSVD 155

Query: 141 VNAPGGEKTYEILQV 155
           V   G  + + +L+V
Sbjct: 156 VTLGGDVREWTVLEV 170


>gi|298209251|ref|YP_003717430.1| GreA/GreB family elongation factor [Croceibacter atlanticus
           HTCC2559]
 gi|83849178|gb|EAP87047.1| GreA/GreB family elongation factor [Croceibacter atlanticus
           HTCC2559]
          Length = 139

 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 51  AAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD 110
            AK+     +  +  L + +  A+++D   +  D I F + + +    +  K    +V  
Sbjct: 25  YAKDF--DTQRAIKCLNDNLKNAQILDEEDVPTDVIRFNSNILVEFNENLKKH-LHLVIP 81

Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
              +++   +S+ +P+   L G   GD++      G +  +I +V
Sbjct: 82  ASKNIKEDKISVITPLGALLFGCAEGDVLHEKLGSGIQHLQIKKV 126


>gi|302339975|ref|YP_003805181.1| GreA/GreB family elongation factor [Spirochaeta smaragdinae DSM
           11293]
 gi|301637160|gb|ADK82587.1| GreA/GreB family elongation factor [Spirochaeta smaragdinae DSM
           11293]
          Length = 131

 Score = 46.7 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 43/107 (40%)

Query: 50  QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
           +A +    L E  +  L + +  A V+D   +    +   A V+    ++G +    IV 
Sbjct: 21  EAMRSSNRLREPYLRHLYDELQAAVVLDEGVLPAGTVTLYAEVAYTNLSTGSRHQASIVF 80

Query: 110 DQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             + +      SI +P+  ALIG+   +     AP G+    I  + 
Sbjct: 81  PADQNHDEKRYSIFTPLGAALIGESEHNRTICYAPAGDIPLRIDAIT 127


>gi|270602105|ref|ZP_06221570.1| transcription elongation factor GreA [Haemophilus influenzae
           HK1212]
 gi|270318242|gb|EFA29436.1| transcription elongation factor GreA [Haemophilus influenzae
           HK1212]
          Length = 33

 Score = 46.3 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           IAR LIGKEL D +++  PGG   ++I++V +I
Sbjct: 1   IARGLIGKELDDTVNITTPGGIVEFDIIEVNYI 33


>gi|59711263|ref|YP_204039.1| transcription elongation factor [Vibrio fischeri ES114]
 gi|59479364|gb|AAW85151.1| transcription elongation factor [Vibrio fischeri ES114]
          Length = 161

 Score = 46.3 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 29/43 (67%)

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           D+   L++ S+P+ +A+IG+++GD   +N  G ++ YEI+ V 
Sbjct: 119 DLVFSLITPSAPLGKAMIGQQVGDEFELNLAGKKQQYEIIDVQ 161


>gi|226942722|ref|YP_002797795.1| hypothetical protein Avin_05670 [Azotobacter vinelandii DJ]
 gi|226717649|gb|ACO76820.1| conserved hypothetical protein [Azotobacter vinelandii DJ]
          Length = 160

 Score = 46.3 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 7/160 (4%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K  V      +++ +L   +   +     A  E     +  +    +AA  L      
Sbjct: 1   MSKTRVLQLILARLEDDLALARIAVQTAHEAATHEESVAENKYDTRGLEAA-YLAAGQSR 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ------EADV 115
           R+ E+   + R   +        R      +  +    G ++   +  D       + D 
Sbjct: 60  RLEEIRQALNRYRNLQARPFDAGRGIQLTDLVRLVDGQGVEQTLFLGPDAAGLKVRDGDR 119

Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           Q  +++  SP+ + L+G+  GD I +   G  + YE+L+V
Sbjct: 120 QVMVITPRSPLGQRLLGRGEGDEIELTLAGALQRYEVLEV 159


>gi|260062081|ref|YP_003195161.1| hypothetical protein RB2501_10827 [Robiginitalea biformata
           HTCC2501]
 gi|88783643|gb|EAR14814.1| hypothetical protein RB2501_10827 [Robiginitalea biformata
           HTCC2501]
          Length = 149

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 40/97 (41%), Gaps = 1/97 (1%)

Query: 59  NEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG 118
           ++     L+  +  A ++D      D +     V+L       ++  ++    +     G
Sbjct: 32  HQHAARLLKRNMASALILDQGECPDDVVRPDVWVTLK-GVPSYRRTVRLASSGKPITTPG 90

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +S+ S +  ++IG+  GD+I    PG   +  I ++
Sbjct: 91  DISVISALGASIIGRSEGDVILFGQPGNTMSLTIAKI 127


>gi|83644422|ref|YP_432857.1| transcription elongation factor [Hahella chejuensis KCTC 2396]
 gi|83632465|gb|ABC28432.1| Transcription elongation factor [Hahella chejuensis KCTC 2396]
          Length = 160

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 59/163 (36%), Gaps = 11/163 (6%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K  +      K+Q +L   QQ        A  E     +  +      A  L      
Sbjct: 1   MRKEKIHQLIIAKLQDDLAVAQQAANTAHATATHEESVAENKYDTFGL-EASYLAEGQSR 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL-- 119
           R+ E E  +   +       +         +  +E   G ++   +    EA     L  
Sbjct: 60  RVREFEAALASYQNTPPKHFTDQDEVAVFALVTLEAEDGSERRLFVGP--EAAGFKFLLD 117

Query: 120 ------VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
                 ++  SPI   L+GK +GD++++ A  GEK +EI+++ 
Sbjct: 118 EQEVLVITRRSPIGMKLMGKMVGDVVALVAGNGEKEFEIVEIE 160


>gi|114328079|ref|YP_745236.1| transcription elongation factor greB [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316253|gb|ABI62313.1| transcription elongation factor greB [Granulibacter bethesdensis
           CGDNIH1]
          Length = 164

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 18/123 (14%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
               VT  G   I+ E+   Q          + E+                E + +    
Sbjct: 26  RPNLVTLSGLTAIEAEIARLQTALAEEKQSTVEES----------------ERRAVLARD 69

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI 122
           +         A+++  +  + + +AFG TV L  K  G    Y+IVG+ EAD + GL+S 
Sbjct: 70  LRYWLARRASAQLVPTAPENAEEVAFGDTVKL--KLGGRTVTYRIVGEDEADPKQGLISY 127

Query: 123 SSP 125
           +SP
Sbjct: 128 ASP 130


>gi|289672826|ref|ZP_06493716.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           syringae FF5]
          Length = 49

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEK-TYEILQVLW 157
            VS+ +P+  AL+G ++G  I   APGG+     +L V +
Sbjct: 1   TVSVLAPMGSALLGLQIGQHIDWPAPGGKTLKLTLLAVEY 40


>gi|37595580|gb|AAQ94634.1| RepB [Comamonas testosteroni]
          Length = 78

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 25/51 (49%)

Query: 107 IVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           +V  ++AD  +G  S+ S +  A++G   GD I        +   I ++L+
Sbjct: 18  LVYPEDADDSAGRFSVFSGVGTAILGCREGDRIDWRILDRTRHIRIEKLLY 68


>gi|118580491|ref|YP_901741.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM
           2379]
 gi|118503201|gb|ABK99683.1| GreA/GreB family elongation factor [Pelobacter propionicus DSM
           2379]
          Length = 172

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 12/152 (7%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEARAYGDLSEN--AEYQAAKELQNLNEGRMAELENII 70
            ++ ++L       R     +I E     +  +    E     + Q      + +     
Sbjct: 23  QQLSRDLELLLSAARTAHEASIHEDNVPENKYDTMGLEASYVAQGQANRGQEIRQAVQEY 82

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV-------QSGLVSIS 123
               +      S  R+    T+   +  +        +G +E  +       +  +++ +
Sbjct: 83  RFLTLHPFDDDSPIRLTALVTLRAGDDGTAKNV---FIGPREGGLKVMDQGEEVMVITPA 139

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+ R+LIG++ GD I   +  G + YEI+QV
Sbjct: 140 SPLGRSLIGRQQGDCIETGSGAGIREYEIVQV 171


>gi|114800117|ref|YP_761046.1| regulatory protein [Hyphomonas neptunium ATCC 15444]
 gi|114740291|gb|ABI78416.1| regulatory protein [Hyphomonas neptunium ATCC 15444]
          Length = 128

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L   ++RA V  +  +  D +     V+ V   +  +  + +V   EA++    +SI + 
Sbjct: 36  LIEELSRARVTAVEDVPVDVVRMHDRVNFVYDGARYED-FTLVYPYEANIADKRISILTQ 94

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQV 155
           +   LIG ++GD +      G   + E+L+V
Sbjct: 95  VGAMLIGLQVGDAMQWAGRDGRGHSMEVLEV 125


>gi|331089360|ref|ZP_08338260.1| hypothetical protein HMPREF1025_01843 [Lachnospiraceae bacterium
          3_1_46FAA]
 gi|330405423|gb|EGG84958.1| hypothetical protein HMPREF1025_01843 [Lachnospiraceae bacterium
          3_1_46FAA]
          Length = 67

 Score = 45.2 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 36/53 (67%)

Query: 7  VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLN 59
          +T    +KI++E+  R+  ER  +I+A+ EAR++GDLSEN EY AAK+ +   
Sbjct: 5  LTKSDVEKIREEIEHRKLVERKELIEAVKEARSHGDLSENFEYHAAKKEKTEM 57


>gi|330903801|gb|EGH34373.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 37

 Score = 45.2 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+ KE+GD + VN P GEK + +  + +
Sbjct: 1   DSPMARALLKKEVGDEVLVNTPEGEKLWFVNSIDY 35


>gi|332186877|ref|ZP_08388619.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Sphingomonas sp. S17]
 gi|332013210|gb|EGI55273.1| prokaryotic transcription elongation factor, GreA/GreB, C-terminal
           domain protein [Sphingomonas sp. S17]
          Length = 154

 Score = 45.2 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 63  MAELENIITRAEVID-ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
             EL    TRA   +     + D +  G+ V++  + +G  K   IVG  EAD     ++
Sbjct: 61  QRELRYWNTRAATAELAPAPAEDEVGIGSVVTI--RLNGQTKALTIVGHDEADPSQDRIA 118

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKT-YEILQV 155
            ++P+ARAL+G   G++++    GG+    EIL V
Sbjct: 119 YAAPLARALMGAMAGEMVAF---GGKADAVEILDV 150


>gi|296164628|ref|ZP_06847195.1| transcription elongation factor GreA [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295900047|gb|EFG79486.1| transcription elongation factor GreA [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 205

 Score = 45.2 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 19/143 (13%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
            ++ + + ++Q+EL                  R   D   +    A +  + L   R+ +
Sbjct: 8   WLSPQAYGRLQRELAAL---------------REPCDADADEYCDAVRRARRLRIQRIHD 52

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L          D             TV   +    + + + +           + S+ SP
Sbjct: 53  LLVNAV--VGQDPPDDGIAEPGMVLTVRYDDT--NEVETFLLGARGAEHCGVEVYSVHSP 108

Query: 126 IARALIGKELGDIISVNAPGGEK 148
           +  A+ G   G+  S   P G +
Sbjct: 109 LGSAIAGARPGERRSYVPPSGVR 131


>gi|294010092|ref|YP_003543552.1| transcription elongation factor [Sphingobium japonicum UT26S]
 gi|292673422|dbj|BAI94940.1| transcription elongation factor [Sphingobium japonicum UT26S]
          Length = 156

 Score = 44.8 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 9/127 (7%)

Query: 37  ARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIA-----FGAT 91
           AR      E  E   A + Q + E    +L+  +        +             FG+ 
Sbjct: 31  ARGLRLTREKVEALEAVDTQAMAEEDAKKLKRELRYWRTRLATAELRPVPDAEAVAFGSR 90

Query: 92  VSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYE 151
           V+   + +G +K   IVGD EA+   G ++ S+P+ARA++  E G+ +      G     
Sbjct: 91  VTY--RLNGREKRIDIVGDDEAEPAEGRIAFSAPLARAMMDAEEGETVDFAGKPGAI--T 146

Query: 152 ILQVLWI 158
           IL +  I
Sbjct: 147 ILAIEAI 153


>gi|170720651|ref|YP_001748339.1| GreA/GreB family elongation factor [Pseudomonas putida W619]
 gi|169758654|gb|ACA71970.1| GreA/GreB family elongation factor [Pseudomonas putida W619]
          Length = 156

 Score = 44.8 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 21/157 (13%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN--------AEYQAAKELQNLNEGRM 63
             +I   L    +  R     A   A A  +++EN        A Y A  + +   E R 
Sbjct: 7   LTRIVAALETDMEVLRRAAQTAYETATAEENIAENKYDTLGLEASYLATGQARRTAEIRQ 66

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-----EADVQSG 118
           A L          D +      I  G+ V L ++    ++ +           EAD    
Sbjct: 67  ALLIYQQLVLRDYDPARG----IQIGSLVILEDEAGAQRQVFLGPEAAGLKIGEADALVT 122

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +++  SP+ + L+GK++ D +S+    G + + I++V
Sbjct: 123 VITPRSPLGQQLVGKKVDDEVSL----GAQLFFIVEV 155


>gi|325955640|ref|YP_004239300.1| GreA/GreB family elongation factor [Weeksella virosa DSM 16922]
 gi|323438258|gb|ADX68722.1| GreA/GreB family elongation factor [Weeksella virosa DSM 16922]
          Length = 129

 Score = 44.4 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 1/92 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-EADVQSGLVSISS 124
           L   I   E++    +  D +     V +     G +++Y  +        +    SI S
Sbjct: 32  LTEEIRNMELVSRKELPADIVNINRKVRVKNHTKGTEQDYIFLSSNFREKPKKNKYSILS 91

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVL 156
            +A A +G++ GD  +     GE   EIL V 
Sbjct: 92  SMALATLGRKTGDRFTWPFDEGEMDIEILSVE 123


>gi|197334352|ref|YP_002155417.1| transcription elongation factor [Vibrio fischeri MJ11]
 gi|197315842|gb|ACH65289.1| transcription elongation factor [Vibrio fischeri MJ11]
          Length = 161

 Score = 44.0 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/43 (37%), Positives = 29/43 (67%)

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           D+   L++ S+P+ +A+IG++LGD   +N  G ++ YEI+ V 
Sbjct: 119 DLVFSLITPSAPLGKAIIGQQLGDEFELNLAGKKQQYEIIDVQ 161


>gi|258622962|ref|ZP_05717977.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258584745|gb|EEW09479.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 140

 Score = 44.0 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%)

Query: 74  EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
           +    +  +  RI  G TVSLV+ +        +V  +  D   G V+  S +  AL G+
Sbjct: 40  QPRSPTERAPHRIKLGDTVSLVDAHRQLAFQVTLVVPEHQDEIHGGVTCDSLLGAALFGR 99

Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158
              ++  ++  G    + I  V  I
Sbjct: 100 RQHEVFELSIWGQRHCFAITHVKHI 124


>gi|258626086|ref|ZP_05720937.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|262172782|ref|ZP_06040460.1| hypothetical protein VII_003613 [Vibrio mimicus MB-451]
 gi|258581612|gb|EEW06510.1| conserved hypothetical protein [Vibrio mimicus VM603]
 gi|261893858|gb|EEY39844.1| hypothetical protein VII_003613 [Vibrio mimicus MB-451]
          Length = 140

 Score = 44.0 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 35/85 (41%)

Query: 74  EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
           +    +  +  RI  G TVSLV+ +        +V  +  D   G V+  S +  AL G+
Sbjct: 40  QPRSPTERAPHRIKLGDTVSLVDAHRQLAFQVTLVVPEHQDEIHGGVTCDSLLGAALFGR 99

Query: 134 ELGDIISVNAPGGEKTYEILQVLWI 158
              ++  ++  G    + I  V  I
Sbjct: 100 RQHEVFELSIWGQRHCFAITHVKHI 124


>gi|325168696|ref|YP_004280486.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3]
 gi|325064419|gb|ADY68108.1| nucleoside diphosphate kinase regulator [Agrobacterium sp. H13-3]
          Length = 179

 Score = 43.6 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 86  IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
           +  G+TVS      G ++   +V   E    +G +S+ +P+  AL+G + G     N+  
Sbjct: 92  VCLGSTVSY--DVEGQQRQVTLVLPNEVLADAGRLSVLTPVGVALLGLKPGQRGEWNSRD 149

Query: 146 GEK-TYEILQV 155
           G +    +++V
Sbjct: 150 GHRHQLTVVRV 160


>gi|254490444|ref|ZP_05103630.1| hypothetical protein MDMS009_776 [Methylophaga thiooxidans DMS010]
 gi|224464188|gb|EEF80451.1| hypothetical protein MDMS009_776 [Methylophaga thiooxydans DMS010]
          Length = 137

 Score = 43.6 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           LE+ + RA++ID   +  D ++  +TV L    S       +V           +SI SP
Sbjct: 35  LEDELERAKIIDSFQLPDDIVSMNSTVELWVTKSDFPVYMTLVYPYGMKKDGSTLSILSP 94

Query: 126 IARALIGKELGDIISVNAPGGE-KTYEILQVLW 157
           I  AL+G + G+        G      +  +L+
Sbjct: 95  IGTALLGIKQGEEFYWPGRDGRNIKARLENILY 127


>gi|148557737|ref|YP_001265319.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
 gi|148502927|gb|ABQ71181.1| GreA/GreB family elongation factor [Sphingomonas wittichii RW1]
          Length = 157

 Score = 43.6 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA 113
           E     +  +          E+   +    D  AFG  V    + +G +K   IVGD EA
Sbjct: 59  EQLKSLKRDLRYWTTRHATMEIQPPADG--DEAAFGTRVRY--RLNGQEKAVAIVGDDEA 114

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKT-YEILQVL 156
           D  +GLVS SSP+ARALIG   GD        G+    E+L V 
Sbjct: 115 DPAAGLVSFSSPLARALIGAGEGDFADF---AGKADAIEVLGVE 155


>gi|312883771|ref|ZP_07743490.1| hypothetical protein VIBC2010_14259 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368520|gb|EFP96053.1| hypothetical protein VIBC2010_14259 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 162

 Score = 43.2 bits (100), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 62/156 (39%), Gaps = 17/156 (10%)

Query: 14  KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ-------AAKELQNLNEGRMAEL 66
           ++++E+    Q++    + A+++A A     E             A  L +    R+ E 
Sbjct: 9   QLKEEIVSMLQQQHNITLDAVNQAVASATDKETIPEHKYDTLALEAAYLAHGQAMRVTES 68

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------L 119
           E  I +   +D+          G  V+L ++N+     +  V      ++         L
Sbjct: 69  EERIRQFLALDLPQNPDQVT-LGCLVALRDENASLH--WFFVSPVSGGLKVNWQGLSIIL 125

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           V+  SP+ +AL GKELGD +        K Y++  +
Sbjct: 126 VTFQSPLGKALRGKELGDDVEYLVGNETKYYQVETI 161


>gi|312131674|ref|YP_003999014.1| hypothetical protein Lbys_2999 [Leadbetterella byssophila DSM
           17132]
 gi|311908220|gb|ADQ18661.1| hypothetical protein Lbys_2999 [Leadbetterella byssophila DSM
           17132]
          Length = 163

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 51/158 (32%), Gaps = 16/158 (10%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           DKI +  + +    Q+L+          IK + +A      S   +          NE  
Sbjct: 16  DKIKILQEAYSHFSQKLKDLDSH-----IKTVQDAANQESKSSVGDKYETGRAMAQNEVF 70

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIV-----GDQEADVQS 117
           M  L+       +      S        T S        +  + +         E     
Sbjct: 71  M--LKTQFESLRIEVEKLGSLLLSDSKDTASSGSLVKTSQGQFLLGPALGKWKSEEKGVF 128

Query: 118 GLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
             +S+ +P+  AL GK+ GD   VN    ++  +IL +
Sbjct: 129 YFISLDAPLGHALQGKKKGDSFEVN----QRKDKILDI 162


>gi|209694346|ref|YP_002262274.1| hypothetical protein VSAL_I0758 [Aliivibrio salmonicida LFI1238]
 gi|208008297|emb|CAQ78443.1| hypothetical protein VSAL_I0758 [Aliivibrio salmonicida LFI1238]
          Length = 173

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 29/45 (64%)

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             D+   L++ S+P+ +A+IGK+LGD   ++  G ++ YEI+ V 
Sbjct: 129 HEDMTFLLITPSAPLGKAMIGKQLGDEFELDLSGRKQQYEIIGVQ 173


>gi|124516047|gb|EAY57556.1| probable helicase [Leptospirillum rubarum]
          Length = 448

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 65/148 (43%), Gaps = 10/148 (6%)

Query: 13  DKIQQELRWRQQEERPRIIKA---ISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
           +K+   L   ++  +P        I E ++ G    N +    + ++ +     AE+E  
Sbjct: 303 EKLISFLEDLRESWKPEHSSGEAWIEEGQSVGQPPMNPD----QSIKQVETMVQAEMERE 358

Query: 70  ITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA 129
              + +ID  T     I  G  V  ++    +      +     D  +G+V+ S P+A+A
Sbjct: 359 AVSSVLID--TDDDLEIEVGDVVRYMDLAHPNDMLTVQITSGRDDFPNGIVNESRPLAQA 416

Query: 130 LIGKELGDIISVNAPGG-EKTYEILQVL 156
           L+G  +GD + ++  G   +T++++++ 
Sbjct: 417 LLGAVVGDEVVLHLVGRPSRTFKVIEIQ 444


>gi|50085871|ref|YP_047381.1| hypothetical protein ACIAD2826 [Acinetobacter sp. ADP1]
          Length = 66

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           P  + L  K + D + V  P G K + I  + +I
Sbjct: 3   PYGKNLFSKSVNDEVHVQTPTGRKIWYINSMEYI 36


>gi|289759954|ref|ZP_06519332.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
 gi|289715518|gb|EFD79530.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
          Length = 40

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           SP+ +AL G + GD ++ + P G    ++L V 
Sbjct: 5   SPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 37


>gi|215448134|ref|ZP_03434886.1| nucleoside diphosphate kinase regulator [Mycobacterium tuberculosis
           T85]
          Length = 42

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           SP+ +AL G + GD ++ + P G    ++L V 
Sbjct: 7   SPLGQALAGHQPGDTVTYSTPQGPNQVQLLAVK 39


>gi|148979983|ref|ZP_01815823.1| hypothetical protein VSWAT3_09463 [Vibrionales bacterium SWAT-3]
 gi|145961506|gb|EDK26809.1| hypothetical protein VSWAT3_09463 [Vibrionales bacterium SWAT-3]
          Length = 157

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 55/147 (37%), Gaps = 11/147 (7%)

Query: 19  LRWRQQEERPRIIKAISEARAYGDLSENAEYQA---AKELQNLNEGRMAELENIITRAEV 75
           L   +   R           A  D     E++    A E   L  G+   ++      + 
Sbjct: 11  LDQLESRLRIAQSATQRAIDAATDEETVPEHKYDTLALEASYLAHGQAVRVQECEEDIQC 70

Query: 76  I-DISTMSGDRIAFGATVSLVEKNSGDKKNYQ------IVGDQEADVQSGLVSISSPIAR 128
             ++     +++   + V +++++   K  +       +      +  S + S ++P  R
Sbjct: 71  YRNLVLRDSEKVTVSSYVVVIDEHDQYKHFFMGPRVGGLSVTWNGNEVSIVTS-NAPFGR 129

Query: 129 ALIGKELGDIISVNAPGGEKTYEILQV 155
           AL+GKE+GD I  +       YE++ +
Sbjct: 130 ALMGKEVGDEIEFSVADKPFCYEVVSI 156


>gi|330884640|gb|EGH18789.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 37

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 24/35 (68%)

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
            SP+ARAL+ KE GD + VN P GEK + +  +++
Sbjct: 1   DSPMARALLKKEEGDEVLVNTPEGEKLWFVNSIVY 35


>gi|193078340|gb|ABO13313.2| hypothetical protein A1S_2907 [Acinetobacter baumannii ATCC 17978]
          Length = 1250

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 100 GDKKNYQIVGDQEADVQSGL-VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
            +    +I+   E+  +    +S  S +A+ LIGK++GD  ++    G E  YEI ++ 
Sbjct: 758 KNMTETKIIDFDESLPRDNEFISYESELAKNLIGKKVGDKFTIQGTFGFENEYEITEIT 816


>gi|126642931|ref|YP_001085915.1| hypothetical protein A1S_2907 [Acinetobacter baumannii ATCC 17978]
          Length = 1216

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 100 GDKKNYQIVGDQEADVQSGL-VSISSPIARALIGKELGDIISVNAPGG-EKTYEILQVL 156
            +    +I+   E+  +    +S  S +A+ LIGK++GD  ++    G E  YEI ++ 
Sbjct: 724 KNMTETKIIDFDESLPRDNEFISYESELAKNLIGKKVGDKFTIQGTFGFENEYEITEIT 782


>gi|261253754|ref|ZP_05946327.1| transcription elongation factor [Vibrio orientalis CIP 102891]
 gi|260937145|gb|EEX93134.1| transcription elongation factor [Vibrio orientalis CIP 102891]
          Length = 158

 Score = 42.5 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 47/144 (32%), Gaps = 7/144 (4%)

Query: 19  LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDI 78
           L+ +         +AI  A     + E+     A E   L  G+   ++      +++  
Sbjct: 14  LQHKHAVAISSAQRAIESATDEETVPEHKYDTLALEASYLAHGQAMRVQECEQEIKMMSD 73

Query: 79  STMSGDRIAFGATVSLVEKNSGDKKNYQIVGD-------QEADVQSGLVSISSPIARALI 131
             +       G    +   +  D++ +  +                 LV+  SP+ +AL 
Sbjct: 74  LVLPESPEKVGLGCVVELIDVDDQRKWFFIAPCSGGLKVDIEQQSIMLVTFDSPLGKALK 133

Query: 132 GKELGDIISVNAPGGEKTYEILQV 155
            K+ GD +          YEI  +
Sbjct: 134 AKQTGDEVEYQVGQYSHCYEIEAI 157


>gi|325284349|ref|YP_004256889.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP]
 gi|324316413|gb|ADY27526.1| GreA/GreB family elongation factor [Deinococcus proteolyticus MRP]
          Length = 174

 Score = 42.5 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 17/167 (10%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIK-AISEARAYGDLSENAEYQAAKELQNLN 59
           M   I +T  G   +Q       Q +  R+ +   +  RA  D  ++ +    +      
Sbjct: 1   MS--IVMTPLGLRALQS----LIQTQEARLTELRAAHRRALEDCRDDTDGSIGQSAAACT 54

Query: 60  EGRMA--ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
           E      +LE+ +  A +   S    +        + V+          IV   EA++  
Sbjct: 55  EAETRLLQLEDALEGAVLAQPSGEQVEPGTVATVSASVDGRPVRTFKVLIVSALEAELLG 114

Query: 118 GLV------SISSPIARALIGKELGDIISVNAPGGE--KTYEILQVL 156
             V      S +SPI  AL+  + G+   +N  GG   +  +I Q+ 
Sbjct: 115 RSVGDLQVASENSPIGMALLAAQEGNRCLLNLGGGRPQQWLKIQQIE 161


>gi|162457080|ref|YP_001619447.1| hypothetical protein sce8795 [Sorangium cellulosum 'So ce 56']
 gi|161167662|emb|CAN98967.1| hypothetical protein predicted by Glimmer/Critica [Sorangium
           cellulosum 'So ce 56']
          Length = 167

 Score = 42.5 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 47/148 (31%), Gaps = 4/148 (2%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           D++ +EL    +  R        E        +    +A+   +  +E  +   + +   
Sbjct: 20  DQLARELERSTERARDAASAVTHEENRAEGDKDMRATEASYVARGHSERVLQIEQALARL 79

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG----LVSISSPIAR 128
             V       G  I   A V L                 E     G     ++ +SP+  
Sbjct: 80  GAVTVRDFGPGAGIESSALVELESGKRRALYFLLPAAGGERIQFQGVELQTLATTSPLGA 139

Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVL 156
           +L+G   GD   V  P G +T+ I  V 
Sbjct: 140 SLLGLSEGDEAEVATPQGTRTHLIASVR 167


>gi|315126486|ref|YP_004068489.1| hypothetical protein PSM_A1405 [Pseudoalteromonas sp. SM9913]
 gi|315015000|gb|ADT68338.1| conserved hypothetical protein [Pseudoalteromonas sp. SM9913]
          Length = 158

 Score = 42.1 bits (97), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/161 (11%), Positives = 59/161 (36%), Gaps = 11/161 (6%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K  VT      ++++L   +   +     A  E        +    +AA   Q   + 
Sbjct: 1   MNKAHVTEHLRFALEEQLNTAKIAAQTAHDTATHEESIAETQYDTLGLEAAYLAQGHADR 60

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA----DVQS 117
               +       ++ +             +  +  ++    + +  +G        D++ 
Sbjct: 61  ----VNECYKEIQLFEAIYNDVVTGTIAVSSLVCLEDDAGTQKWFYLGPAAGGLTVDIKG 116

Query: 118 GLVSISS---PIARALIGKELGDIISVNAPGGEKTYEILQV 155
             + + +   P+ + L+GK++ D +S+     + +Y++++V
Sbjct: 117 TTIQVLTSGAPLGQQLLGKQVDDEVSLTLGDVKHSYDVVKV 157


>gi|114775474|ref|ZP_01451042.1| GreA/GreB family elongation factor [Mariprofundus ferrooxydans
           PV-1]
 gi|114553585|gb|EAU55966.1| GreA/GreB family elongation factor [Mariprofundus ferrooxydans
           PV-1]
          Length = 161

 Score = 42.1 bits (97), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 84  DRIAFGATVSLVEKNSGDKKNYQIVG-----DQEADVQSGLVSISSPIARALIGKELGDI 138
             I   + V L +++   +  +            AD    ++++ SP+  AL+GK  GD 
Sbjct: 84  PVIGLSSLVVLADEHHEQRYLWLAADAGGLKIDYADTPITIITVKSPLGSALVGKAAGDE 143

Query: 139 ISVNAPGGEKTYEILQ 154
             +   G  + Y ++ 
Sbjct: 144 FEICIAGKTRAYTVVS 159


>gi|326795231|ref|YP_004313051.1| transcription elongation factor GreA/GreB domain-containing protein
           [Marinomonas mediterranea MMB-1]
 gi|326545995|gb|ADZ91215.1| transcription elongation factor GreA/GreB domain-containing protein
           [Marinomonas mediterranea MMB-1]
          Length = 161

 Score = 42.1 bits (97), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/39 (41%), Positives = 23/39 (58%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           LVS+ SPI ++L+GK  GD  +V   G E   EI  + +
Sbjct: 123 LVSLDSPIGKSLMGKSEGDEFTVLRAGVEVYAEISDIHY 161


>gi|328474348|gb|EGF45153.1| hypothetical protein VP10329_16615 [Vibrio parahaemolyticus 10329]
          Length = 185

 Score = 42.1 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 18/157 (11%)

Query: 16  QQEL-----RWRQQEERPRIIKAISEARAYGDLSENAEYQA------AKELQNLNEGRMA 64
           + EL        +++ R           A  D     E++       A  L +    R+ 
Sbjct: 29  KAELIQIIIHQLEEKLRIAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQ 88

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA------DVQSG 118
           E E+ + +   + I   +   I  GA V LV++N   +K + I            D +  
Sbjct: 89  ESEDELRQYRSMVIRDFTDAPIGVGAYVVLVDEN-NIEKRFFIGPCSGGLTVAWQDQEVF 147

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +++  SP+ RAL+GKE G+   +        YE++ V
Sbjct: 148 VLTAKSPLGRALLGKEEGEEFEMKIGDKTTCYEVVTV 184


>gi|104780733|ref|YP_607231.1| hypothetical protein PSEEN1559 [Pseudomonas entomophila L48]
 gi|95109720|emb|CAK14421.1| conserved hypothetical protein [Pseudomonas entomophila L48]
          Length = 160

 Score = 42.1 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 33/169 (19%), Positives = 62/169 (36%), Gaps = 23/169 (13%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN--------AEYQAAK 53
           +DK  +      +I   L    +  R     A   A A  +++EN        A Y A  
Sbjct: 1   MDKASLLP----RIIATLELDMEVLRRAAQTAYEAATAEENIAENKYDTLGLEASYLATG 56

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-- 111
           + +   E R A L          D +      I  G  V+L +++   +  +        
Sbjct: 57  QARRTAEIRQALLTYQQMVLRDYDPARG----IQVGCLVTLEDEDGQQRLLFLGPEGAGL 112

Query: 112 ---EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYE-ILQVL 156
              E D    +++  +P+ + L+GK + D +S+    G    + I++V 
Sbjct: 113 KIGEGDALVTVITPRAPLGQQLVGKRIDDEVSLLV-NGITQVQVIIEVT 160


>gi|220926703|ref|YP_002502005.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS
           2060]
 gi|219951310|gb|ACL61702.1| GreA/GreB family elongation factor [Methylobacterium nodulans ORS
           2060]
          Length = 147

 Score = 42.1 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           +  +  L + + RA V     +    ++    V     +    + + +V   +       
Sbjct: 32  DRNVVFLFSELERATVCPAMELPDQVVSANCRVIYRIDDEPCLRAHMLVHPCDLISPDDE 91

Query: 120 VSISSPIARALIGKELGDIISV-NAPGGEKTYEILQVL 156
           +S  SP+  AL+G ++GD +   +   G +   ++ V 
Sbjct: 92  ISAGSPLGIALLGLKVGDRMPFCDTQTGGRH--VVAVE 127


>gi|254507861|ref|ZP_05119991.1| GreA/GreB family elongation factor [Vibrio parahaemolyticus 16]
 gi|219549234|gb|EED26229.1| GreA/GreB family elongation factor [Vibrio parahaemolyticus 16]
          Length = 164

 Score = 41.7 bits (96), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 7/144 (4%)

Query: 19  LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDI 78
           L  + +  +  + +A+  A     + E+     A E   L  G+   ++       +   
Sbjct: 20  LEQKWRVAQSSMQRAVESATDEETVPEHKYDTLALEASYLAHGQAVRVQECEREIRMFRE 79

Query: 79  STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ------EADVQSGLV-SISSPIARALI 131
             +                +  D+  Y  V         E D    LV +  SP+  AL 
Sbjct: 80  LELPKSPQHVVLGSLAAVVDMSDRTQYFFVAPCAGGLKVELDGTEVLVVTFQSPLGLALK 139

Query: 132 GKELGDIISVNAPGGEKTYEILQV 155
           GK +GD +          YEI  +
Sbjct: 140 GKSVGDELEYQVSSTTFCYEIETI 163


>gi|323491713|ref|ZP_08096891.1| hypothetical protein VIBR0546_05698 [Vibrio brasiliensis LMG 20546]
 gi|323314075|gb|EGA67161.1| hypothetical protein VIBR0546_05698 [Vibrio brasiliensis LMG 20546]
          Length = 164

 Score = 41.7 bits (96), Expect = 0.032,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 7/144 (4%)

Query: 19  LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDI 78
           L  + Q  +  + +AI  A     + E+     A E   L  G+   L+       +   
Sbjct: 20  LEQKWQIAQSSVQRAIESATDEETVPEHKYDTLALEASYLAHGQAKRLQECEQEISLFKE 79

Query: 79  STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE-------ADVQSGLVSISSPIARALI 131
             M  +         +   +  +++ +  +           ++    LV+  SP+ RAL 
Sbjct: 80  LVMPQEPHCVVLGCLVSLLDVNEQRKWFFISPCAGGLKVAASEATVMLVTFDSPLGRALK 139

Query: 132 GKELGDIISVNAPGGEKTYEILQV 155
            K +GD +       E  YEI  +
Sbjct: 140 SKNVGDEVIYRVAEAEHCYEIETI 163


>gi|24372678|ref|NP_716720.1| putative transcription elongation factor [Shewanella oneidensis
           MR-1]
 gi|24346727|gb|AAN54165.1|AE015553_10 conserved hypothetical protein [Shewanella oneidensis MR-1]
          Length = 128

 Score = 41.7 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 34/77 (44%)

Query: 79  STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
           S  + +++  G  V LV +    +   ++V       ++G  S+ S +  +L+G+  G+ 
Sbjct: 47  SDDTVEKVTLGREVVLVNQQDQQEYRVELVYPPRHKPRAGRYSVISDLGVSLLGRSKGEY 106

Query: 139 ISVNAPGGEKTYEILQV 155
             VN  G    + +  +
Sbjct: 107 AEVNILGKPVLFMVKDI 123


>gi|327481647|gb|AEA84957.1| transcription elongation factor [Pseudomonas stutzeri DSM 4166]
          Length = 158

 Score = 41.7 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 64/161 (39%), Gaps = 11/161 (6%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K  +  +    ++ +    +         A        +  +    +AA  L +    
Sbjct: 1   MNKSALQQQIIATLEADREVAKAVLAATHEAATHAESKAENKYDTRGLEAA-YLADGQRR 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--- 118
           R+ E+E  +     +     S  R+  GA   L+  +    + +  +G   A ++     
Sbjct: 60  RLHEIETALAAYRNLQAGVSSDGRVRVGA---LLCLDHDGAERWFFLGPDAAGLKLQHDG 116

Query: 119 ----LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
               +++  SP+ + L+G+E+GD + +   G  + YE+LQ+
Sbjct: 117 REILVITARSPLGQGLLGREVGDEVELRVHGQLQRYEVLQI 157


>gi|28899114|ref|NP_798719.1| hypothetical protein VP2341 [Vibrio parahaemolyticus RIMD 2210633]
 gi|28807338|dbj|BAC60603.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 185

 Score = 41.7 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 18/157 (11%)

Query: 16  QQEL-----RWRQQEERPRIIKAISEARAYGDLSENAEYQA------AKELQNLNEGRMA 64
           + EL        +++ R           A  D     E++       A  L +    R+ 
Sbjct: 29  KAELIQIIIHQLEEKLRIAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQ 88

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA------DVQSG 118
           E E+ + +   + I   +   I  GA V LV++N   +K + I            D +  
Sbjct: 89  ESEDELRQYRSMVIRDFTDAPIGVGAYVVLVDEN-NIEKRFFIGPCSGGLTVAWQDQEVF 147

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +++  SP+ RAL+GKE G+   +        YE++ V
Sbjct: 148 VLTAKSPLGRALLGKEEGEEFEMKIGDKTTCYEVVTV 184


>gi|254562832|ref|YP_003069927.1| regulator [Methylobacterium extorquens DM4]
 gi|254270110|emb|CAX26100.1| putative regulator [Methylobacterium extorquens DM4]
          Length = 149

 Score = 41.7 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/78 (15%), Positives = 31/78 (39%)

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
           +     L   + RA +     +  + ++    V     +    + + +    +    +  
Sbjct: 32  DSHADFLLWELKRATLCPPCALPSEVVSVNCRVLYRLDDEPGVRVHLLAHPDDLINLADG 91

Query: 120 VSISSPIARALIGKELGD 137
           +S++SP+  AL+G  +GD
Sbjct: 92  LSVASPLGTALLGLRVGD 109


>gi|157375539|ref|YP_001474139.1| hypothetical protein Ssed_2402 [Shewanella sediminis HAW-EB3]
 gi|157317913|gb|ABV37011.1| conserved hypothetical protein [Shewanella sediminis HAW-EB3]
          Length = 168

 Score = 41.3 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 26/42 (61%)

Query: 114 DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           DV+  +++ SSP+  AL+G+ L D + +N     K YEI+ V
Sbjct: 126 DVEVMVITPSSPLGNALMGRMLDDTVVINIGDNRKEYEIIAV 167


>gi|84388970|ref|ZP_00991178.1| hypothetical protein V12B01_09821 [Vibrio splendidus 12B01]
 gi|84377034|gb|EAP93906.1| hypothetical protein V12B01_09821 [Vibrio splendidus 12B01]
          Length = 157

 Score = 41.3 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 59/145 (40%), Gaps = 6/145 (4%)

Query: 17  QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
           ++L  R +  +    +AI  A     + E+     A E   L  G+   ++      +  
Sbjct: 12  EQLESRLRIAQSATQRAIDAATDEETVPEHKYDTLALEASYLAHGQAVRVQECEDDIQCY 71

Query: 77  -DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADV--QSGLVSI---SSPIARAL 130
            ++     +RI   + V +++++   K  +         V      ++I   ++P  +AL
Sbjct: 72  RNLVLRDSERITVSSYVVVIDEHDQYKHFFMGPRVGGLSVTWNENEIAIVTENAPFGQAL 131

Query: 131 IGKELGDIISVNAPGGEKTYEILQV 155
           +GKE+GD I       +  YE++ +
Sbjct: 132 MGKEVGDEIEFKVADKQFCYEVISI 156


>gi|118465685|ref|YP_881204.1| transcription elongation factor GreA [Mycobacterium avium 104]
 gi|118166972|gb|ABK67869.1| transcription elongation factor GreA [Mycobacterium avium 104]
          Length = 177

 Score = 41.3 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 54/149 (36%), Gaps = 13/149 (8%)

Query: 8   TSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELE 67
           TS+    ++ EL   + +    +           D  +    +AA+     N  R+ E  
Sbjct: 10  TSQYHRGLRDELSALRSQRSVEVPD---------DFMDYRPGRAARPSVRRNRIRVLEE- 59

Query: 68  NIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIA 127
             +  A        +    A G  +++    +G+ + + +        +  + S++SP+ 
Sbjct: 60  --LLAAGPGSGDRAAQAVAAPGMVLTIRYDATGETETFLLGRRNGGGGRVKVYSMASPLG 117

Query: 128 RALIGKELGDIISVNAPGGE-KTYEILQV 155
           R++ G   G+      P    +   +L+V
Sbjct: 118 RSVAGARPGEQRIYAIPNDTGRVVTLLKV 146


>gi|269965274|ref|ZP_06179395.1| hypothetical protein VMC_08250 [Vibrio alginolyticus 40B]
 gi|269830075|gb|EEZ84303.1| hypothetical protein VMC_08250 [Vibrio alginolyticus 40B]
          Length = 138

 Score = 41.3 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 35/78 (44%)

Query: 78  ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
               +  RIA G TV LV+     +    +V  ++    +G++++ S +   L+G+   D
Sbjct: 42  AHCRNRARIAVGDTVRLVDVERAYQYRMTLVSSRKGQPMTGMLAVDSYLGARLLGRAKND 101

Query: 138 IISVNAPGGEKTYEILQV 155
            + V      + + I ++
Sbjct: 102 ALEVEIFNQRRCFVITEI 119


>gi|260219858|emb|CBA26810.1| hypothetical protein Csp_G38500 [Curvibacter putative symbiont of
          Hydra magnipapillata]
          Length = 209

 Score = 40.9 bits (94), Expect = 0.051,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 4  KIPVTSKGFDKIQQELRWRQQEERPRIIKAIS 35
          K  +T +GF  ++ EL      ERP+I+  + 
Sbjct: 31 KNYITPQGFATLRDELLDLIDNERPKIVDIVH 62



 Score = 38.6 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLW 157
           S  SPIAR L+    GD + +  P      E+L+V +
Sbjct: 167 SWISPIARTLLKAREGDELKLVMPDRVCDIEVLRVQY 203


>gi|86145686|ref|ZP_01064016.1| hypothetical protein MED222_01992 [Vibrio sp. MED222]
 gi|218708725|ref|YP_002416346.1| hypothetical protein VS_0704 [Vibrio splendidus LGP32]
 gi|85836657|gb|EAQ54783.1| hypothetical protein MED222_01992 [Vibrio sp. MED222]
 gi|218321744|emb|CAV17699.1| hypothetical protein VS_0704 [Vibrio splendidus LGP32]
          Length = 157

 Score = 40.9 bits (94), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 59/145 (40%), Gaps = 6/145 (4%)

Query: 17  QELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVI 76
           ++L  R +  +    +AI  A     + E+     A E   L  G+   ++      +  
Sbjct: 12  EQLESRLRIAQSATQRAIDAATDEETVPEHKYDTLALEASYLAHGQAVRVQECEGDIQCY 71

Query: 77  -DISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-----LVSISSPIARAL 130
            ++     ++I   + V +++++   K  +         V        +V+ ++P  +AL
Sbjct: 72  RNLVLRDSEKITVSSYVVVIDEHDQYKHFFMGPRVGGLSVTWNNNEVAIVTENAPFGQAL 131

Query: 131 IGKELGDIISVNAPGGEKTYEILQV 155
           +GKE+GD I       +  YE++ +
Sbjct: 132 MGKEVGDEIEFKVADKQFCYEVISI 156


>gi|56675424|emb|CAA83788.2| transcription elongation factor [Mycoplasma capricolum subsp.
          capricolum ATCC 27343]
          Length = 44

 Score = 40.5 bits (93), Expect = 0.068,   Method: Composition-based stats.
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 20 RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
          +   +  RP++I+ + EAR  GDLSENA+Y AA+  Q   E
Sbjct: 1  KNLLEVTRPKVIEELVEARNQGDLSENADYDAARNRQAEVE 41


>gi|91223443|ref|ZP_01258708.1| hypothetical protein V12G01_22293 [Vibrio alginolyticus 12G01]
 gi|91191529|gb|EAS77793.1| hypothetical protein V12G01_22293 [Vibrio alginolyticus 12G01]
          Length = 159

 Score = 40.5 bits (93), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 3/104 (2%)

Query: 52  AKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ 111
           A  +Q+  E        +    +   +   +   +A    +              +    
Sbjct: 58  AMRIQDSEEELRQYRSLVTRNFKNAPVGVGAYVVLADENLIEKHFFVGPCSGGLTVQYQT 117

Query: 112 EADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
              ++  +++  SP+ RAL GKE GD + V        YE++ +
Sbjct: 118 ---LEVFVLTAKSPLGRALFGKEEGDEVDVKIGDKTTCYEVVTI 158


>gi|148264888|ref|YP_001231594.1| hypothetical protein Gura_2848 [Geobacter uraniireducens Rf4]
 gi|146398388|gb|ABQ27021.1| GreA/GreB family elongation factor [Geobacter uraniireducens Rf4]
          Length = 161

 Score = 40.5 bits (93), Expect = 0.071,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 62/161 (38%), Gaps = 7/161 (4%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K  +     +K+  +        +     +I E     +  E    +A+   Q    
Sbjct: 1   MTKKERILYLIIEKLSADFAVVFNAAKAAHEASIHEENIPDNKYETLSLEASYVAQGQA- 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD------QEAD 114
            R  E++  +   + + +   + D       +  +E   G +K   I  +      ++  
Sbjct: 60  NRAQEIKIALDTYKKLSLQHFAEDVPIRLTALVTLEAGDGVEKTVFIGPEAGGLKVEDGG 119

Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           V++ +++ +SP+   LIGK  GD + V     +  +EI++V
Sbjct: 120 VETIVITPNSPLGEGLIGKIAGDSVEVGRGNAKSVFEIVEV 160


>gi|330501417|ref|YP_004378286.1| GreA/GreB family elongation factor [Pseudomonas mendocina NK-01]
 gi|328915703|gb|AEB56534.1| GreA/GreB family elongation factor [Pseudomonas mendocina NK-01]
          Length = 160

 Score = 40.5 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 55/160 (34%), Gaps = 7/160 (4%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK  +       +Q +L             A  E     +  +    +AA  L +    
Sbjct: 1   MDKNLLLQDVLTHLQADLEQASLAALTAHEAATHEENVAENKYDTLGLEAA-YLASGQAR 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD------QEADV 115
           R+ EL   +     +        +      + L+    G ++   +         Q A  
Sbjct: 60  RVEELRQTLITWRQLRPRPFDAAQGIELGALILLASEDGHEQWLFLGPQGASMKLQHAGQ 119

Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
              ++  ++P+ R L+GK  GD I++      + +E+L V
Sbjct: 120 SIQVLGNAAPLGRLLLGKHPGDEINLPMGQRLQAFEVLTV 159


>gi|77920154|ref|YP_357969.1| putative transcriptional elongation factor [Pelobacter carbinolicus
           DSM 2380]
 gi|77546237|gb|ABA89799.1| GreA/GreB family elongation factor [Pelobacter carbinolicus DSM
           2380]
          Length = 185

 Score = 40.1 bits (92), Expect = 0.087,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +++ +SP+ +AL+GK+ GD++ +    G + YEI+ +
Sbjct: 149 VITPASPLGKALLGKQCGDLVEIAGDVG-REYEIVSI 184


>gi|146305505|ref|YP_001185970.1| GreA/GreB family elongation factor [Pseudomonas mendocina ymp]
 gi|145573706|gb|ABP83238.1| GreA/GreB family elongation factor [Pseudomonas mendocina ymp]
          Length = 160

 Score = 40.1 bits (92), Expect = 0.089,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 7/159 (4%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K  +      ++Q +L             A  E     +  +    +AA  L +    
Sbjct: 1   MNKTLLLQAVLSQLQADLEQANLAALSAHETATHEENVAENKYDTLGLEAA-YLASGQAR 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD------QEADV 115
           R+ EL   +     +        +      + L+    G ++   +         Q A  
Sbjct: 60  RVEELRQTLITWRQLRPRPFDEAQGIELGALVLLAGEDGHEQWLFLGPQGASMKLQHAGR 119

Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
              ++  ++P+ R L+GK  GD I++      + +E+L 
Sbjct: 120 SIQVLGNAAPLGRLLLGKRPGDEINLPMGKRLQLFEVLA 158


>gi|323497951|ref|ZP_08102960.1| hypothetical protein VISI1226_07912 [Vibrio sinaloensis DSM 21326]
 gi|323316996|gb|EGA69998.1| hypothetical protein VISI1226_07912 [Vibrio sinaloensis DSM 21326]
          Length = 164

 Score = 40.1 bits (92), Expect = 0.090,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 11/153 (7%)

Query: 14  KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQA----AKELQNLNEGRMAELENI 69
           +++Q +    +++R     ++  A       E          A E   L  G+   L+  
Sbjct: 11  ELKQIILDLLEKKRQVAQSSVQRAIESATDEETVPEHKYDTLALEAAYLAHGQAMRLQEC 70

Query: 70  ITRAEVID--ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-----LVSI 122
                 I      ++   +  G+ V + + +  +   +         V  G     LV+ 
Sbjct: 71  EQEIRQITDLELPVAPSNVVMGSLVYVSDLDEVEHCYFMAPCSGGLKVTFGETEVTLVTF 130

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SP+ RAL G+  GD           +Y+I  +
Sbjct: 131 ESPLGRALKGRMSGDEAEYKVADTMFSYQIETI 163


>gi|70731618|ref|YP_261359.1| hypothetical protein PFL_4267 [Pseudomonas fluorescens Pf-5]
 gi|68345917|gb|AAY93523.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5]
          Length = 139

 Score = 39.8 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 42/118 (35%), Gaps = 13/118 (11%)

Query: 46  NAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY 105
            A Y AA + + + E R A            D           G       ++    + +
Sbjct: 28  EASYLAAGQARRVEEIRQALGLWQNLSLRPYDPQKGIQIGALLGL------EDENGHEQW 81

Query: 106 QIVGDQEADVQSGL-------VSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
             +G   A ++  +       ++  SP+ ++L+GK   D + +   G  + + + +V 
Sbjct: 82  LFLGPDGAGLKVYVVGQLVTVITPRSPLGKSLLGKFEDDEVEIVVAGARQQFTVTEVR 139


>gi|281424495|ref|ZP_06255408.1| conserved hypothetical protein [Prevotella oris F0302]
 gi|281401332|gb|EFB32163.1| conserved hypothetical protein [Prevotella oris F0302]
          Length = 1194

 Score = 39.8 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 53/147 (36%), Gaps = 22/147 (14%)

Query: 17  QELRWRQQEERP------RIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
           +EL   ++E         + +    +A A  + +E A     K LQ   E          
Sbjct: 668 EELAAYEKEALAFEYTSYQALATTYKAFASNNYAETAVEILYKNLQIDEERVKTFFYLES 727

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
           T   + DI     ++   G               Y ++     D +   ++  SP+  A+
Sbjct: 728 TMGPIHDIVNKQYEKAEIG--------------QYVLIEYANGDRKVYRITSDSPLGIAV 773

Query: 131 IGKELGDIISVNA--PGGEKTYEILQV 155
           IGK+  DI+ VN      ++  +++ +
Sbjct: 774 IGKKANDIVEVNLDYSRRKRKVKVIGI 800


>gi|322829088|gb|EFZ32636.1| hypothetical protein TCSYLVIO_1016 [Trypanosoma cruzi]
          Length = 668

 Score = 39.8 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 2/87 (2%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISE-ARAYGDLSENAEYQAAKELQNLNEG 61
           +K+ +  +G  + Q+EL   +  ER    + + E AR    + E    +AA+E Q   E 
Sbjct: 570 EKLQLLQEGQRRRQEEL-HVKLLERAAKSEELRELARQRAGMREEKVRKAAEEQQRKVEE 628

Query: 62  RMAELENIITRAEVIDISTMSGDRIAF 88
           R++        A           RI  
Sbjct: 629 RLSRFYQSRKEARAQRALQEERKRIRM 655


>gi|307293531|ref|ZP_07573375.1| transcription elongation factor GreA/GreB domain-containing protein
           [Sphingobium chlorophenolicum L-1]
 gi|306879682|gb|EFN10899.1| transcription elongation factor GreA/GreB domain-containing protein
           [Sphingobium chlorophenolicum L-1]
          Length = 156

 Score = 39.8 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 25/137 (18%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
             VT++G    ++++   +  E        +EA A  D         AK+L+      + 
Sbjct: 27  NWVTARGLRLTREKVEALEAVE--------TEAMAEED---------AKKLKR----ELR 65

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
                +  AE+  +     + +AFG+ V+   + +G +K   +VGD EA+   G ++ S+
Sbjct: 66  YWRTRLATAELRPVPDA--EAVAFGSRVTY--RLNGKEKRIDLVGDDEAEPAEGRIAFSA 121

Query: 125 PIARALIGKELGDIISV 141
           P+ARA++  E G+ +  
Sbjct: 122 PLARAMMDAEEGEAVDF 138


>gi|90577235|ref|ZP_01233046.1| hypothetical protein VAS14_09329 [Vibrio angustum S14]
 gi|90440321|gb|EAS65501.1| hypothetical protein VAS14_09329 [Vibrio angustum S14]
          Length = 160

 Score = 39.8 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 13/163 (7%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K  + ++   ++QQ L    +      ++A + A    +++EN     A E   L  G
Sbjct: 1   MNKQKLLNQVQIRLQQTLEAATE----AALRAYNTATDDENVAENQYDTLALEASYLAHG 56

Query: 62  RMAELENIITRAEVIDISTMSGDRIA----FGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
           +   +E              +  ++      G  V+L +++   +  +         V  
Sbjct: 57  QAQRVEECKADVIAYQALQANLPKVFDTVLLGHIVTLADEDDNKRFVFLGPSSGGLVVTF 116

Query: 118 GLVSIS-----SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
              S++     SP   ALIG+E+G+ + V+       YE++ +
Sbjct: 117 DQFSVTIVTPTSPFGDALIGREIGEEVDVHIGDNVTWYEVMAI 159


>gi|269928504|ref|YP_003320825.1| hypothetical protein Sthe_2589 [Sphaerobacter thermophilus DSM
           20745]
 gi|269787861|gb|ACZ40003.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM
           20745]
          Length = 1164

 Score = 39.8 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 8/124 (6%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           + VT +G++ +++E       E     +   EAR    L E A   AA   + L+E R  
Sbjct: 180 VRVTREGYEHLRREEARLD--ELRERAQRAMEARDRAALLEQALAYAAAR-RTLDEARER 236

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS-GLVSIS 123
                   A +        +RI    T +   +   +    Q +   EAD +  GL+   
Sbjct: 237 LATFPEVLARLHGDEDQRLERIEANLTSARQRRTEAE----QALQRAEADARETGLMGHE 292

Query: 124 SPIA 127
            P  
Sbjct: 293 LPPG 296


>gi|269966226|ref|ZP_06180315.1| hypothetical protein VMC_17450 [Vibrio alginolyticus 40B]
 gi|269829141|gb|EEZ83386.1| hypothetical protein VMC_17450 [Vibrio alginolyticus 40B]
          Length = 159

 Score = 39.8 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/149 (22%), Positives = 51/149 (34%), Gaps = 16/149 (10%)

Query: 19  LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDI 78
           L  + Q       +AI  A     + E+     A E   L  G+   +++          
Sbjct: 14  LEEKLQVAHASAQRAIDAATDEETVPEHKYDTLALEAAYLAHGQAMRIQDSEEELRQYRS 73

Query: 79  ---STMSGDRIAFGATVSLVEKNSGDKKNYQ---------IVGDQEADVQSGLVSISSPI 126
                     +  GA V L ++N  +K  +              QE  V +      SP+
Sbjct: 74  LVTRDFKNAPVGVGAYVVLADENLLEKHFFVGPCSGGLAVQYQAQEVFVLTAK----SPL 129

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
            RAL GKE GD + V        YE++ V
Sbjct: 130 GRALFGKEEGDEVDVKIGDKTTCYEVVTV 158


>gi|254562535|ref|YP_003069630.1| hypothetical protein METDI4156 [Methylobacterium extorquens DM4]
 gi|254269813|emb|CAX25788.1| conserved hypothetical protein, putative regulator
           [Methylobacterium extorquens DM4]
          Length = 161

 Score = 39.8 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L + + RA  +  S   G  +A    VS    +       ++     A      +S +S
Sbjct: 37  FLLSELDRAVTVAASPPLGGVVAVTCRVSYRLDDEPTVHARRLAHPSSAVGSEEEISAAS 96

Query: 125 PIARALIGKELGDIISV--NAPGGEKTYEILQVL 156
           P+  A++G   GD +    NA G E   EI  V 
Sbjct: 97  PLGVAMLGLRRGDRMPFRDNATGREHVVEIADVE 130


>gi|153836776|ref|ZP_01989443.1| transcription elongation factor [Vibrio parahaemolyticus AQ3810]
 gi|260895902|ref|ZP_05904398.1| transcription elongation factor [Vibrio parahaemolyticus Peru-466]
 gi|308094401|ref|ZP_07662909.1| transcription elongation factor [Vibrio parahaemolyticus AN-5034]
 gi|308125781|ref|ZP_05777348.2| transcription elongation factor [Vibrio parahaemolyticus K5030]
 gi|308126243|ref|ZP_05908759.2| transcription elongation factor [Vibrio parahaemolyticus AQ4037]
 gi|149749922|gb|EDM60667.1| transcription elongation factor [Vibrio parahaemolyticus AQ3810]
 gi|308089372|gb|EFO39067.1| transcription elongation factor [Vibrio parahaemolyticus Peru-466]
 gi|308091428|gb|EFO41123.1| transcription elongation factor [Vibrio parahaemolyticus AN-5034]
 gi|308108568|gb|EFO46108.1| transcription elongation factor [Vibrio parahaemolyticus AQ4037]
 gi|308115313|gb|EFO52853.1| transcription elongation factor [Vibrio parahaemolyticus K5030]
          Length = 159

 Score = 39.8 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 61/157 (38%), Gaps = 18/157 (11%)

Query: 16  QQEL-----RWRQQEERPRIIKAISEARAYGDLSENAEYQA------AKELQNLNEGRMA 64
           + EL        +++ R           A  D     E++       A  L +    R+ 
Sbjct: 3   KAELIQIIIHQLEEKLRIAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQ 62

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA------DVQSG 118
           E E+ + +   + I   +   I  GA V LV++N   +K + I            D +  
Sbjct: 63  ESEDELRQYRSMVIRDFTDAPIGVGAYVVLVDEN-NIEKRFFIGPCSGGLTVAWQDQEVF 121

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +++  SP+ RAL+GKE G+   +        YE++ V
Sbjct: 122 VLTAKSPLGRALLGKEEGEEFEMKIGDKTTCYEVVTV 158


>gi|326801882|ref|YP_004319701.1| hypothetical protein Sph21_4514 [Sphingobacterium sp. 21]
 gi|326552646|gb|ADZ81031.1| hypothetical protein Sph21_4514 [Sphingobacterium sp. 21]
          Length = 154

 Score = 39.4 bits (90), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 57/157 (36%), Gaps = 20/157 (12%)

Query: 15  IQQELRWRQQEERPRIIKAISEARAYGD---------LSENAEYQAAKELQNLNEGRMAE 65
           + +EL   + +   R  + ++E   + +          +++ +  A  + +   E    E
Sbjct: 1   MNKELNELKTKLYKRCHEIVNERIDHAEQGICYAKDAATDDTKSSAGDKYETTREMMQQE 60

Query: 66  LENIITR---AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD----QEADVQSG 118
           +     +   A  +               V L      +   + +       + +     
Sbjct: 61  INRNERQLAEANRLKYQLDGVSVALVSDIVQLGSLVQTNDGLFFLAIALGTVELSPYSFF 120

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           ++S  SP  + ++GK +G+ ++ N    +++Y+IL +
Sbjct: 121 VISPVSPFGQTMLGKRVGECLTFN----KRSYQILAI 153


>gi|291300432|ref|YP_003511710.1| hypothetical protein Snas_2942 [Stackebrandtia nassauensis DSM 44728]
 gi|290569652|gb|ADD42617.1| conserved hypothetical protein [Stackebrandtia nassauensis DSM 44728]
          Length = 1801

 Score = 39.4 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 24/53 (45%)

Query: 103  KNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +        E       +  +SP+  A+IG E+GD++ +      + +E++ V
Sbjct: 1745 REVHEGTIAEDGDGPTHIPANSPLGVAIIGAEVGDVVPLLVDSRIRRFEVVAV 1797


>gi|253698818|ref|YP_003020007.1| GreA/GreB family elongation factor [Geobacter sp. M21]
 gi|251773668|gb|ACT16249.1| GreA/GreB family elongation factor [Geobacter sp. M21]
          Length = 151

 Score = 39.4 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 53/150 (35%), Gaps = 13/150 (8%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           +++  +L       R     A  E     +  +    +A+   Q     R  E+   +  
Sbjct: 7   ERLAADLAVLTNAARAAHEAATHEENIPDNKYDTLSLEASYVAQGQA-NRAQEIRRALHA 65

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVSISSP 125
              ++       +      +  +E   G  K + +   QE  ++         +++  SP
Sbjct: 66  YRSLEPQAFGAGQAIRLTALVTLEGEDGCGKTFFLG-PQEGGLKLEIEGEEVVVITPGSP 124

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           + + LIGK  GD   +    G+  YEI+ V
Sbjct: 125 MGQELIGKSAGDEARI----GKVAYEIVAV 150


>gi|310767689|gb|ADP12639.1| ATP-dependent RNA helicase HrpA [Erwinia sp. Ejp617]
          Length = 1300

 Score = 39.4 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 7/144 (4%)

Query: 14  KIQQELRWRQQE-ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           K+  E+   + +  R  I+       A+ D     E  +A+      +    E  + +  
Sbjct: 770 KLLAEVEELEHKSRRRDILVDDETLFAFYDQRIGHEVVSARHFDRWWKTLSREEPDRLNF 829

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
           A+ + I   +             + +   + +YQ     +AD  +  + +       L+ 
Sbjct: 830 AKEMLIKQGADKVSPLDYPNFWHQGHLKLRLSYQFEPGADADGVTVFIPLP------LLN 883

Query: 133 KELGDIISVNAPGGEKTYEILQVL 156
           +   +      PG  +   I  + 
Sbjct: 884 QVEDNGFEWQIPGVRRELVIALIK 907


>gi|259908387|ref|YP_002648743.1| ATP-dependent RNA helicase HrpA [Erwinia pyrifoliae Ep1/96]
 gi|224964009|emb|CAX55514.1| ATP-dependent RNA helicase HrpA [Erwinia pyrifoliae Ep1/96]
 gi|283478329|emb|CAY74245.1| ATP-dependent helicase HrpA [Erwinia pyrifoliae DSM 12163]
          Length = 1300

 Score = 39.4 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 7/144 (4%)

Query: 14  KIQQELRWRQQE-ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           K+  E+   + +  R  I+       A+ D     E  +A+      +    E  + +  
Sbjct: 770 KLLAEVEELEHKSRRRDILVDDETLFAFYDQRIGHEVVSARHFDRWWKTLSREEPDRLNF 829

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
           A+ + I+  + +           + +   + +YQ     +AD  +  + +       L+ 
Sbjct: 830 AKEMLINQGADNVSPLDYPNFWHQGHLKLRLSYQFEPGADADGVTVFIPLP------LLN 883

Query: 133 KELGDIISVNAPGGEKTYEILQVL 156
           +   +      PG  +   I  + 
Sbjct: 884 QVEDNGFEWQIPGVRRELVIALIK 907


>gi|301166284|emb|CBW25859.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 159

 Score = 39.4 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 14/162 (8%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQ----AAKELQN 57
           ++K  + +   D+I+ EL      +          A    D    +++      A  L  
Sbjct: 1   MNKKKLLANLIDQIKVELE-----KAKAAYDTSKSATRDPDFKSESKWDTRSIEAGYLAG 55

Query: 58  LNEGRMAELENIITRAEV-IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA--- 113
             + R+ ELE  +   E     S      +  G+ V +   N   K              
Sbjct: 56  AQKVRVDELEMDLNVIEELAADSLSKKPTVTIGSLVEIKFNNLVKKYFITPAAGGYIVNV 115

Query: 114 -DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
            D  +  +S+ SPI   ++  E GD   V   G  + YEI+ 
Sbjct: 116 DDEVALTISVFSPIGNEVLDLEEGDSFEVEMNGESREYEIIS 157


>gi|163852772|ref|YP_001640815.1| hypothetical protein Mext_3358 [Methylobacterium extorquens PA1]
 gi|163664377|gb|ABY31744.1| hypothetical protein Mext_3358 [Methylobacterium extorquens PA1]
          Length = 161

 Score = 39.4 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 34/94 (36%), Gaps = 2/94 (2%)

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISS 124
            L + + RA         G  +A    V+    +       ++     A      +S +S
Sbjct: 37  FLLSELDRAVTFAAPPPLGGVVAVTCRVNYRLDDEPTVHARRLAHPSSAVDSEEEISAAS 96

Query: 125 PIARALIGKELGDIISV--NAPGGEKTYEILQVL 156
           P+  A++G   GD +    NA G E   EI  V 
Sbjct: 97  PLGVAMLGLRRGDRMPFRDNATGREHVVEIADVE 130


>gi|91228344|ref|ZP_01262272.1| hypothetical protein V12G01_10091 [Vibrio alginolyticus 12G01]
 gi|91188104|gb|EAS74408.1| hypothetical protein V12G01_10091 [Vibrio alginolyticus 12G01]
          Length = 138

 Score = 39.4 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 34/78 (43%)

Query: 78  ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGD 137
               +  RIA G  V LV+     +    +V  ++    +G++++ S +   L+G+   D
Sbjct: 42  AHCRNRARIAVGDMVRLVDVERAYQYRMTLVSSRKGQPMTGMLAVDSYLGSRLLGRAKND 101

Query: 138 IISVNAPGGEKTYEILQV 155
            + V      + + I ++
Sbjct: 102 ALEVEIFNQRRCFVITEI 119


>gi|212635479|ref|YP_002312004.1| transcription elongation factor [Shewanella piezotolerans WP3]
 gi|212556963|gb|ACJ29417.1| Transcription elongation factor [Shewanella piezotolerans WP3]
          Length = 190

 Score = 39.4 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 23/37 (62%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           L++  SPI   L+ +E+GD +S+N  G    YEI+ +
Sbjct: 153 LITPQSPIGEKLMSREVGDEVSINVAGKRHHYEIVGI 189


>gi|156933867|ref|YP_001437783.1| ATP-dependent RNA helicase HrpA [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156532121|gb|ABU76947.1| hypothetical protein ESA_01693 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1301

 Score = 39.0 bits (89), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 46/145 (31%), Gaps = 7/145 (4%)

Query: 13  DKIQQELRWRQQE-ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            K++ E+   + +  R  I+        + D   + +  +A+   +  +    E  +++ 
Sbjct: 770 QKLRAEVEELEHKSRRRDILVDDDTLFEFYDQRISVDAISARHFDSWWKKASRETPDLLN 829

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
             + + I   +             + N   +  YQ     +AD  +  + +       L+
Sbjct: 830 FEKSMLIKEGAEKVSKLDYPNFWHQGNLKLRLTYQFEPGGDADGVTVHIPLP------LL 883

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
            +          PG  +   I  + 
Sbjct: 884 NQVEDAGFEWQVPGMRRELIIALIK 908


>gi|295134441|ref|YP_003585117.1| transcription elongation factor [Zunongwangia profunda SM-A87]
 gi|294982456|gb|ADF52921.1| transcription elongation factor [Zunongwangia profunda SM-A87]
          Length = 149

 Score = 39.0 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 41/125 (32%), Gaps = 5/125 (4%)

Query: 32  KAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGA- 90
             I E+    D+  + +     E+ +  E     L     + E +            G  
Sbjct: 28  DQIKESMENNDIKTDYDEDNKGEMLSNFEKNAGYLSEAQEQKEDLSKIDPEYKNERIGFG 87

Query: 91  TVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTY 150
           +V    K              E   +   +S  +PI +AL GK+ GD  +     GE+  
Sbjct: 88  SVVETNKKYYFVSIALGEISMENGSKIFAISTKAPIYKALEGKKKGDTFTF---NGEEH- 143

Query: 151 EILQV 155
           EI  +
Sbjct: 144 EITGI 148


>gi|87119377|ref|ZP_01075275.1| hypothetical protein MED121_13945 [Marinomonas sp. MED121]
 gi|86165768|gb|EAQ67035.1| hypothetical protein MED121_13945 [Marinomonas sp. MED121]
          Length = 160

 Score = 39.0 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 50/147 (34%), Gaps = 9/147 (6%)

Query: 15  IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
           I++ L  R +       +A   A     ++EN       E   L  G+   +       +
Sbjct: 10  IKKMLEKRFETAATAAHQAYEAATDKESVAENKYDTFGLEASYLAHGQSQRVIECENDLK 69

Query: 75  VIDI----STMSGDRIAFGATVSLVEKNSGDKKNY-QIVGDQEADVQSGL----VSISSP 125
                        D IA GA V L E        +       +A    G     ++ SSP
Sbjct: 70  HFLSMTFKDFNEDDAIAMGALVELEESAGKQITCFISPCAGGQAFDFEGKNCLLITPSSP 129

Query: 126 IARALIGKELGDIISVNAPGGEKTYEI 152
           + RAL+G  L D + V      K YEI
Sbjct: 130 LGRALLGANLEDEVKVTIGADTKFYEI 156


>gi|313499982|gb|ADR61348.1| GreA/GreB family elongation factor [Pseudomonas putida BIRD-1]
          Length = 156

 Score = 38.6 bits (88), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 21/153 (13%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN--------AEYQAAK 53
           +DK  +       I   L             A   A A  +++EN        A Y A  
Sbjct: 1   MDKPYL----LALIVATLEHDLDVLTRAAQTAYEAATAEENIAENKYDTLGLEASYLATG 56

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-- 111
           + +   E R A +          D +      +     V+L  ++ G ++ +        
Sbjct: 57  QARRSAEIRQALVIYQQLLLRDYDPARG----VQVSNLVTLENEHGGQRRLFLGPEAAGL 112

Query: 112 ---EADVQSGLVSISSPIARALIGKELGDIISV 141
              E D    +++  SP+ + L+GK + D +++
Sbjct: 113 KIGEGDGLVTVITPRSPLGQQLLGKRVDDEVNL 145


>gi|113969271|ref|YP_733064.1| GreA/GreB family elongation factor [Shewanella sp. MR-4]
 gi|114046468|ref|YP_737018.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
 gi|113883955|gb|ABI38007.1| GreA/GreB family elongation factor [Shewanella sp. MR-4]
 gi|113887910|gb|ABI41961.1| GreA/GreB family elongation factor [Shewanella sp. MR-7]
          Length = 128

 Score = 38.6 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 35/77 (45%)

Query: 79  STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
           S  + D++  G  + LV ++   +   ++V       ++G  S+ S +  +L+G+  G+ 
Sbjct: 47  SEETLDKVTVGREILLVNQHDQQEYRIELVYPPRHKPRAGRYSVISDLGVSLLGRTKGEY 106

Query: 139 ISVNAPGGEKTYEILQV 155
             VN  G    + +  +
Sbjct: 107 AEVNILGKPVLFIVKDI 123


>gi|330447801|ref|ZP_08311449.1| prokaryotic transcription elongation factor, GreA /GreB, C-terminal
           domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491992|dbj|GAA05946.1| prokaryotic transcription elongation factor, GreA /GreB, C-terminal
           domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 160

 Score = 38.6 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 23/168 (13%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKEL------ 55
           ++K  +     D IQ++L    Q      ++A + A    +++EN     A E       
Sbjct: 1   MNKQML----LDDIQEKLTLTLQAATEAAMRAYNTATDDENVAENQYDTLALEASYLAHG 56

Query: 56  --QNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ------I 107
             Q + E +   +     +A +      S D +  G  V+LV++    +  +       +
Sbjct: 57  QAQRVEECKADLMAYQKLQASL----PQSFDSVLLGHIVTLVDEEDNTRLVFLGPTAGGV 112

Query: 108 VGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           V   E    + +V+ +SP   ALIG+E+G+ + V+       YE+L +
Sbjct: 113 VLTLEGKPVT-IVTPTSPFGDALIGREIGEEVDVHIGNSVTWYEVLAI 159


>gi|225012479|ref|ZP_03702915.1| GreA/GreB family elongation factor [Flavobacteria bacterium
           MS024-2A]
 gi|225003456|gb|EEG41430.1| GreA/GreB family elongation factor [Flavobacteria bacterium
           MS024-2A]
          Length = 148

 Score = 38.6 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 56/141 (39%), Gaps = 9/141 (6%)

Query: 18  ELRWRQQEERPRIIK--AISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEV 75
           E +    EE+ ++++   +SE+++             +  +     ++AELE    +   
Sbjct: 15  EAKRLLLEEQKKVLQGALMSESKSSAGDKHETGRAMVQLDREKLGNQIAELEQNQQKLNT 74

Query: 76  IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135
           +     +        +V L +K +          + +A      +S  SPI + LIGK++
Sbjct: 75  LKNHKTTTSVSL--GSVVLTDKENYYISIATNFCEIDAKKYYC-ISAQSPIGKLLIGKKV 131

Query: 136 GDIISVNAPGGEKTYEILQVL 156
            D I  N    ++   IL++ 
Sbjct: 132 NDKIEFN----KRLSTILEIR 148


>gi|71423067|ref|XP_812329.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70877099|gb|EAN90478.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 780

 Score = 38.6 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISE-ARAYGDLSENAEYQAAKELQNLNEG 61
           +K+ +  +G  + Q+EL   +  ER    + + E AR   ++ E    +AA+E Q   E 
Sbjct: 571 EKLQLLQEGQRRRQEEL-HVKLLERAAKSEELRELARQRAEMREEKVRKAAEEQQQKVEE 629

Query: 62  RMAELENIITRAEVIDISTMSGDRIAF 88
           R++        A           RI  
Sbjct: 630 RLSRFYQSRKEARAQRALQEERKRIRM 656


>gi|89072414|ref|ZP_01158993.1| hypothetical protein SKA34_06560 [Photobacterium sp. SKA34]
 gi|89051946|gb|EAR57398.1| hypothetical protein SKA34_06560 [Photobacterium sp. SKA34]
          Length = 160

 Score = 38.6 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 64/163 (39%), Gaps = 13/163 (7%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K  + ++   ++QQ L    +      ++A + A    +++EN     A E   L  G
Sbjct: 1   MNKQKLLNQVQIRLQQTLEAATE----AALRAYNTATDDENVAENQYDTLALEASYLAHG 56

Query: 62  RMAELENIITRAEVIDISTMSGDRIA----FGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
           +   +E          +   +  +       G  V+L +++   +  +         V  
Sbjct: 57  QAQRVEECKADITAYQVLQANLPKAFDTVLLGHIVTLADEDDNMRFVFLGPSSGGLVVTF 116

Query: 118 GLVSIS-----SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
              S++     SP   AL+G+E+G+ + ++       YE++ +
Sbjct: 117 EQYSVTIVTPTSPFGDALVGREIGEEVDIHIGDKVTWYEVMAI 159


>gi|167624223|ref|YP_001674517.1| GreA/GreB family elongation factor [Shewanella halifaxensis
           HAW-EB4]
 gi|167354245|gb|ABZ76858.1| GreA/GreB family elongation factor [Shewanella halifaxensis
           HAW-EB4]
          Length = 165

 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 54/159 (33%), Gaps = 21/159 (13%)

Query: 18  ELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELEN------IIT 71
           +L    ++E    + +   A      +       AK          + L +         
Sbjct: 6   QLHHLIRQELENALGSAVAAAKRAHDTATDTESIAKSKYETFGLEASYLAHGQSVRVAQC 65

Query: 72  RAEVID----------ISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
           +A+V D          +S     ++  G  V L++ +   +  +   G     V     S
Sbjct: 66  QADVRDFDALFTRLSGVSETRAPKVGLGKLVELMDADGKSQYLFVGPGAGGLKVTCDEYS 125

Query: 122 IS-----SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +      SP+ RA++ K  GD  S+   G  + YEI+ V
Sbjct: 126 VMIVTLASPLGRAMMSKLQGDEFSLQVAGSRRDYEIVMV 164


>gi|313672008|ref|YP_004050119.1| hypothetical protein Calni_0040 [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312938764|gb|ADR17956.1| protein of unknown function DUF214 [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 837

 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 132 GKELGDIISVNAPGGEKTYEILQV 155
           G + GD I ++ P G+  ++I +V
Sbjct: 605 GLKEGDTIEIDTPKGKVKFKIREV 628


>gi|299531765|ref|ZP_07045167.1| hypothetical protein CTS44_13278 [Comamonas testosteroni S44]
 gi|298720206|gb|EFI61161.1| hypothetical protein CTS44_13278 [Comamonas testosteroni S44]
          Length = 160

 Score = 38.2 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 10/149 (6%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           D +Q E   R   E     + I+E + Y  L   A Y AA + +     R A       R
Sbjct: 17  DLLQVEQAARVAHEAATHEENIAENK-YDTLGLEAAYLAAGQARRAEAIRQAMANWRQFR 75

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-----LVSISSPIA 127
            +  + S      I  GA + LV+ +   ++ +         + +G     ++S  +P++
Sbjct: 76  PQPYNASQG----IQLGALICLVDSDDKQQQIFLGPDGGNMKLLNGAELIQVISSKAPLS 131

Query: 128 RALIGKELGDIISVNAPGGEKTYEILQVL 156
           RA++GK  GD +SV      + +E+L V 
Sbjct: 132 RAMLGKCEGDEVSVQLAPVRQRFEVLWVQ 160


>gi|269960572|ref|ZP_06174944.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834649|gb|EEZ88736.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 159

 Score = 37.8 bits (86), Expect = 0.43,   Method: Composition-based stats.
 Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 8/147 (5%)

Query: 17  QELRWRQQEERPRIIKAISEARAYGDLSE---NAEYQAAKELQNLNEGRMAELENIITRA 73
           Q+L  + Q       +AI  A     + E   +     A  L +    R+ E E  + + 
Sbjct: 12  QQLEDKLQVAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEEELRQY 71

Query: 74  EVIDISTMSGDRIAFGATVSLVEKNSGDKKNY----QIVGDQEADVQS-GLVSISSPIAR 128
             + +      RIA GA V LV++N  +K  +          E   +   +++  SP+ R
Sbjct: 72  RTLVLRDFVDARIAVGAYVELVDENDVEKAFFIGPCSGGLTVEWQGKEVFVLTPKSPLGR 131

Query: 129 ALIGKELGDIISVNAPGGEKTYEILQV 155
           AL+GKE G+ + +        YE++ +
Sbjct: 132 ALMGKEEGEEVEMKIGDKTTCYEVVTI 158


>gi|262199267|ref|YP_003270476.1| hypothetical protein Hoch_6108 [Haliangium ochraceum DSM 14365]
 gi|262082614|gb|ACY18583.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365]
          Length = 174

 Score = 37.8 bits (86), Expect = 0.44,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 58/167 (34%), Gaps = 17/167 (10%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQA-------AKEL 55
           DK+ + ++   +I ++L      +R     A  E        +    +A       A  +
Sbjct: 4   DKVALLAEVRARIAEDLAALVGSQRETQAGATHEEAKPESDKDTRAIEASYLARGLADRV 63

Query: 56  QNLNEGRMAELENIITRAEVIDI---STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
            +L E        I+ R    D    S +    +         +   G    Y  V    
Sbjct: 64  SSLREASAKLASLIVRRFGEDDAVALSALVEVEVEDEDGDGDGDAEGGGAALYYFVLPAG 123

Query: 113 ADVQSG-------LVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
           A V+         +V+  +P+ + L+G+ +GD + +  PGG +   +
Sbjct: 124 AGVKLRASGALVRVVTPEAPVGKLLLGRRVGDELHLPGPGGGREVVV 170


>gi|332526113|ref|ZP_08402251.1| hypothetical protein RBXJA2T_09667 [Rubrivivax benzoatilyticus JA2]
 gi|332109956|gb|EGJ10584.1| hypothetical protein RBXJA2T_09667 [Rubrivivax benzoatilyticus JA2]
          Length = 25

 Score = 37.8 bits (86), Expect = 0.46,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 17/23 (73%)

Query: 136 GDIISVNAPGGEKTYEILQVLWI 158
           GD+  V APGG + +EI++V ++
Sbjct: 3   GDVAEVQAPGGVRHWEIVEVKYL 25


>gi|71664421|ref|XP_819191.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70884482|gb|EAN97340.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 784

 Score = 37.8 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 2/87 (2%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISE-ARAYGDLSENAEYQAAKELQNLNEG 61
           +K+ +  +G  + Q+EL   +  ER    + + E AR   ++ E    +AA+E Q   E 
Sbjct: 575 EKLQLLQEGQRRRQEEL-HVKLLERAAKSEELRELARQRAEMREEKVRKAAEEQQRKVEE 633

Query: 62  RMAELENIITRAEVIDISTMSGDRIAF 88
           R++        A           RI  
Sbjct: 634 RLSRFYQSCKEARAQRALQEERKRIRM 660


>gi|240172377|ref|ZP_04751036.1| HrpA-like helicase [Mycobacterium kansasii ATCC 12478]
          Length = 1324

 Score = 37.8 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 14/135 (10%), Positives = 39/135 (28%), Gaps = 11/135 (8%)

Query: 13  DKIQQELRWRQQE-ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            +++ EL   ++   R  ++ A  +  A  D    A+  +A+      + +  +    + 
Sbjct: 794 ARLRAELEDLEERARRRDLLVADDDVYALYDARIPADVVSARHFDAWWKTQRRK-TPDLL 852

Query: 72  RAEVIDISTMSGDRIAFGATVSLV-EKNSGDKKNYQIVGDQEADVQSGLVSISSPIARAL 130
                D+        A    V    +        ++     +       + + + +    
Sbjct: 853 TFRRDDLLRADDTAGADRPHVWQAGDVALPLTYRFEPGAADDGVTVHVPIDVLARLG--- 909

Query: 131 IGKELGDIISVNAPG 145
                GD  +   P 
Sbjct: 910 -----GDEFAWQVPA 919


>gi|117919375|ref|YP_868567.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3]
 gi|117611707|gb|ABK47161.1| GreA/GreB family elongation factor [Shewanella sp. ANA-3]
          Length = 128

 Score = 37.8 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 34/78 (43%)

Query: 79  STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
           S  + D++  G  + LV +    +   ++V       ++G  S+ S +  +L+G+  G+ 
Sbjct: 47  SEETQDKVTVGREILLVNQQDQQEYRIELVYPPRHKPRAGRYSVISDLGVSLLGRTKGEY 106

Query: 139 ISVNAPGGEKTYEILQVL 156
             VN  G    + +  + 
Sbjct: 107 AEVNILGKPVLFMVKDIT 124


>gi|330980302|gb|EGH78435.1| hypothetical protein PSYAP_17438 [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 160

 Score = 37.5 bits (85), Expect = 0.57,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 17/162 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN----AEYQAAKELQN 57
           ++K  V  +  DK+  +L   ++  +     A  E     +  +     A Y AA + + 
Sbjct: 1   MNKRDVLQRIIDKLNIDLDIAERAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARR 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA---- 113
           + E R +         +  D S         G  V + + +      Y  +G   A    
Sbjct: 61  VEEIRQSLTLYRKWSLKPFDESRGIQT----GDLVVVEDVSGQTH--YLFLGPDAAGLKV 114

Query: 114 ---DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
              D    +++  +P+ ++L+GK   D + +   G  ++YEI
Sbjct: 115 SAGDQLVTVITARAPLGQSLLGKFEDDAVQIVINGSRQSYEI 156


>gi|289677182|ref|ZP_06498072.1| hypothetical protein PsyrpsF_28108 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 160

 Score = 37.5 bits (85), Expect = 0.58,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 13/114 (11%)

Query: 46  NAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY 105
            A Y AA + + + E R +         +  D S         G  V + + +      Y
Sbjct: 49  EASYLAAGQARRVEEIRQSLTLYRKWSLKPFDESRGIQT----GDLVVVEDADGQTH--Y 102

Query: 106 QIVGDQEA-------DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
             +G   A       D    +++  +P+ ++L+GK   D + +   G  ++YEI
Sbjct: 103 LFLGPDAAGLKVSAGDQLVTVITARAPLGQSLLGKFEDDAVQIVINGSRQSYEI 156


>gi|254414393|ref|ZP_05028159.1| Type I restriction modification DNA specificity domain protein
           [Microcoleus chthonoplastes PCC 7420]
 gi|196178623|gb|EDX73621.1| Type I restriction modification DNA specificity domain protein
           [Microcoleus chthonoplastes PCC 7420]
          Length = 411

 Score = 37.5 bits (85), Expect = 0.59,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 19  LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDI 78
           L + +   +   I ++ E    G       +  + + Q      ++ L+  I      + 
Sbjct: 116 LTFLKARIQNLAIGSVQENINLGTFKNIKFFFPSVKKQKEIASVLSCLDRKIENLRKQND 175

Query: 79  STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDI 138
           +  +  +  F       E  + D K Y+  G      + G +     +       +LGD+
Sbjct: 176 TLEAIAQTLFKHWFVDFEFPNADGKPYKSSGGAMEPSELGEIPAGWRVG------KLGDV 229

Query: 139 ISVNAPGGEKTYEILQVLWI 158
           + VNA    K+Y+  ++ ++
Sbjct: 230 VKVNAESISKSYQHKEIEYV 249


>gi|330897221|gb|EGH28640.1| hypothetical protein PSYJA_06464 [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 160

 Score = 37.5 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 61/162 (37%), Gaps = 17/162 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN----AEYQAAKELQN 57
           ++K  V  +  DK+  +L   ++  +     A  E     +  +     A Y AA + + 
Sbjct: 1   MNKQDVLQRIIDKLNIDLDIAERAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARR 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA---- 113
           + E R +         +  D S         G  V + + +      Y  +G   A    
Sbjct: 61  VEEIRQSLTLYRKWSLKPFDESRGIQT----GDLVVVEDADGQTH--YLFLGPDAAGLKV 114

Query: 114 ---DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
              D    +++  +P+ ++L+GK   D + +   G  ++YEI
Sbjct: 115 SAGDQLVTVITARAPLGQSLLGKFEDDAVQIVINGSRQSYEI 156


>gi|153212935|ref|ZP_01948529.1| hypothetical protein A55_0034 [Vibrio cholerae 1587]
 gi|124116161|gb|EAY34981.1| hypothetical protein A55_0034 [Vibrio cholerae 1587]
          Length = 163

 Score = 37.5 bits (85), Expect = 0.61,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 32/84 (38%)

Query: 74  EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
                   +  RI  G TVSLV+ +        +   +      G V+  S +  AL+G+
Sbjct: 63  HPRSPIERAPQRIKLGDTVSLVDAHRQLSFQVTLTTSENQHEVQGGVTCDSLLGAALLGR 122

Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157
              ++ +++  G    + I  V  
Sbjct: 123 RQHEVFTLSILGQPHCFAITHVQH 146


>gi|262393491|ref|YP_003285345.1| transcription elongation factor [Vibrio sp. Ex25]
 gi|262337085|gb|ACY50880.1| transcription elongation factor [Vibrio sp. Ex25]
          Length = 159

 Score = 37.5 bits (85), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+ RAL GKE GD I V        YE++ V
Sbjct: 127 SPLGRALFGKEEGDEIDVKIGEKTTCYEVVTV 158


>gi|291280251|ref|YP_003497086.1| ABC transporter permease [Deferribacter desulfuricans SSM1]
 gi|290754953|dbj|BAI81330.1| ABC transporter, permease [Deferribacter desulfuricans SSM1]
          Length = 833

 Score = 37.5 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 17/24 (70%)

Query: 132 GKELGDIISVNAPGGEKTYEILQV 155
           G ++GD I ++ P G++ ++I ++
Sbjct: 601 GLKVGDFIEIDTPKGKEKFKIREI 624


>gi|260598056|ref|YP_003210627.1| ATP-dependent RNA helicase HrpA [Cronobacter turicensis z3032]
 gi|260217233|emb|CBA31134.1| ATP-dependent RNA helicase hrpA [Cronobacter turicensis z3032]
          Length = 1301

 Score = 37.5 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 46/145 (31%), Gaps = 7/145 (4%)

Query: 13  DKIQQELRWRQQE-ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            K++ E+   + +  R  I+        + D   + E  +A+   +  +    E  +++ 
Sbjct: 770 QKLRAEVEELEHKSRRRDILVDDDTLFEFYDQRISVEAISARHFDSWWKQASRETPDLLN 829

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
             + + I   +             + N   + +YQ      AD  +  + +       L+
Sbjct: 830 FEKSMLIKEGAEKVSKLDYPNFWHQGNLKLRLSYQFEPGDAADGVTVHIPLP------LL 883

Query: 132 GKELGDIISVNAPGGEKTYEILQVL 156
            +          PG  +   I  + 
Sbjct: 884 NQVEDVGFEWQVPGMRRELIIALIK 908


>gi|302528649|ref|ZP_07280991.1| cytochrome P450 reductase [Streptomyces sp. AA4]
 gi|302437544|gb|EFL09360.1| cytochrome P450 reductase [Streptomyces sp. AA4]
          Length = 334

 Score = 37.5 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 43/134 (32%), Gaps = 6/134 (4%)

Query: 20  RWRQQEERPRIIKAISEARAYGDLS-ENAEYQAAKELQNLNEGRMAELENIITRAEVIDI 78
               ++ER   +    +AR   D+  E      A          + E+ +I      + +
Sbjct: 60  DTLTEDERAAGLALACQARLRSDVVVETTGGGRATHPLRDLAATVREIRDIARDTRRLRL 119

Query: 79  STMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARA-----LIGK 133
                     G  V L    +G ++ Y +V   + D    L     P   A       G 
Sbjct: 120 GLPEPLAFHAGQYVELTVPGAGVRRQYSLVNTADEDKVLELHVRLVPGGAATEQWIFAGL 179

Query: 134 ELGDIISVNAPGGE 147
            +GD + V  P G+
Sbjct: 180 AVGDQVQVTGPLGD 193


>gi|84499275|ref|ZP_00997563.1| hypothetical protein OB2597_05090 [Oceanicola batsensis HTCC2597]
 gi|84392419|gb|EAQ04630.1| hypothetical protein OB2597_05090 [Oceanicola batsensis HTCC2597]
          Length = 1334

 Score = 37.5 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
                ++    +A+ L+GK++GD I +    G     I ++
Sbjct: 838 STRDEIAPDDALAQRLMGKKVGDQIEMEGLNGPYALTIKEI 878


>gi|300716851|ref|YP_003741654.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
 gi|299062687|emb|CAX59807.1| ATP-dependent RNA helicase [Erwinia billingiae Eb661]
          Length = 1299

 Score = 37.5 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 51/144 (35%), Gaps = 7/144 (4%)

Query: 14  KIQQELRWRQQE-ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           K+++E+   + +  R  I+       A+ D+    +  +A+   +  +    E   ++  
Sbjct: 770 KLREEVEELEHKSRRRDILVDDETLFAFYDMRIPQDVVSARHFDSWWKLTSREQPELLNF 829

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
           A+ + I   + +           + N   + +YQ     EAD  +  V +       L+ 
Sbjct: 830 AKEMLIKEGASNVSKLDYPNVWQQGNLKLRLSYQFEPGTEADGVTVHVPLP------LLN 883

Query: 133 KELGDIISVNAPGGEKTYEILQVL 156
           +   +      PG  +   I  + 
Sbjct: 884 QVEENGFEWQIPGVRRELIIALIK 907


>gi|317122235|ref|YP_004102238.1| malate synthase A [Thermaerobacter marianensis DSM 12885]
 gi|315592215|gb|ADU51511.1| malate synthase A [Thermaerobacter marianensis DSM 12885]
          Length = 531

 Score = 37.5 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 11/153 (7%)

Query: 7   VTSKGFD---KIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRM 63
           +T +      ++Q+E    +++   R  +   E  A       A  +A +E         
Sbjct: 21  LTPEALAFVARLQREFNPVRKQLLERRAERQQELAAGARPDFLASTRAIREGDWRVAPVP 80

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQ---IVGDQEADVQSGLV 120
           A+L++            M  + +  GA V + +    +   +           D   G +
Sbjct: 81  ADLQDRRVEITGPVDRKMMINALNSGARVFMADFEDANTPTWDNCIQGQINLIDAVEGTI 140

Query: 121 SISSPIARALIGKELGDIIS--VNAPGGEKTYE 151
             +SP  R      LG+ ++  V  P G    E
Sbjct: 141 EYTSPDGRV---YRLGEKVATLVVRPRGWHLVE 170


>gi|154253499|ref|YP_001414323.1| GreA/GreB family elongation factor [Parvibaculum lavamentivorans
           DS-1]
 gi|154157449|gb|ABS64666.1| GreA/GreB family elongation factor [Parvibaculum lavamentivorans
           DS-1]
          Length = 171

 Score = 37.1 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 46/124 (37%), Gaps = 3/124 (2%)

Query: 36  EARAYGDLSENAEYQAAKELQNLNEGRMA-ELENIITRAEVIDISTMSGDRIAFGATVSL 94
           E R      + A  + A   Q      M   +   +  A ++  + ++      G+ V  
Sbjct: 22  EQRPLLTRHDFARLELACFEQLDLLNPMQPFVRAKLEEARIVSGNEIAETVATLGSIVRY 81

Query: 95  VEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK-TYEIL 153
             ++   ++    + ++ A      +S+ +PI  AL+G+  GD+       G K T  I 
Sbjct: 82  RIEDRMLERRLLQLDNRHA-PNGQYLSVLTPIGLALLGRSTGDLCEAELFNGAKLTIRIA 140

Query: 154 QVLW 157
            +  
Sbjct: 141 LIEH 144


>gi|289624634|ref|ZP_06457588.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289651140|ref|ZP_06482483.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330870018|gb|EGH04727.1| nucleoside diphosphate kinase regulator [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 118

 Score = 37.1 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 85  RIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIIS 140
            +   + V   E+ SG   + ++V  Q+A    G VS+ +P+  AL+G ++G  I 
Sbjct: 54  VVTMNSRVHCREEVSGKDYHLKLVYPQDA-GADGTVSVLAPMGSALLGLQVGQHID 108


>gi|152996208|ref|YP_001341043.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1]
 gi|150837132|gb|ABR71108.1| GreA/GreB family elongation factor [Marinomonas sp. MWYL1]
          Length = 163

 Score = 37.1 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           LV+  SP+ + L+GK +GD + +   G +  YEI  + 
Sbjct: 126 LVTPFSPVGKKLLGKVVGDEVELLQNGKQMAYEITTIE 163


>gi|221134409|ref|ZP_03560714.1| hypothetical protein GHTCC_05724 [Glaciecola sp. HTCC2999]
          Length = 84

 Score = 37.1 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           ++S  SP+ + L+GKE GD +S+        Y I  
Sbjct: 47  VISTHSPLGKQLLGKETGDELSIGLGARSTQYRITD 82


>gi|315023874|gb|EFT36876.1| hypothetical protein RAYM_00630 [Riemerella anatipestifer RA-YM]
 gi|325335759|gb|ADZ12033.1| hypothetical protein RIA_0900 [Riemerella anatipestifer RA-GD]
          Length = 163

 Score = 37.1 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 10/155 (6%)

Query: 2   VDKIPVTSKGFDKIQQELRWR-QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++K  +     ++ Q+ +    +  ER RI   I E   + D  + +    AK++Q   E
Sbjct: 17  MEKEIILKAIANEQQKIVDNLQKSVERYRIESDIDEDATH-DPEDFSHQTEAKDMQLRFE 75

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
                 +N +   E    +      I  G  +   +       +      +  DV    +
Sbjct: 76  QMANTAKNHLAFIEHS--AQEHHTSIESGCLIKTDKSYIFIGISVPPFKYEGKDVVC--I 131

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  +PI   +   ++GD +      G    E++++
Sbjct: 132 SEEAPIYSKIKNAKVGDKVDF----GSHQIEVIEI 162


>gi|229589230|ref|YP_002871349.1| hypothetical protein PFLU1711 [Pseudomonas fluorescens SBW25]
 gi|229361096|emb|CAY47959.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
          Length = 160

 Score = 37.1 bits (84), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 42/116 (36%), Gaps = 13/116 (11%)

Query: 46  NAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNY 105
            A Y AA + + + E + A            D           G       ++   ++ +
Sbjct: 49  EASYLAAGQAKRVEEIKQALTLCQAMALRPYDDQRGIAVGALLGL------EDENGRQQW 102

Query: 106 QIVGDQEADVQSGL-------VSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
             +    A ++  +       ++  SP+ ++L+GK  GD + +   G  + + + +
Sbjct: 103 LFLAPDAAGLKVDVVGQPVTVITPRSPLGKSLLGKFEGDEVEILVAGARQHFTVTE 158


>gi|330950317|gb|EGH50577.1| transcription elongation factor GreA [Pseudomonas syringae Cit 7]
          Length = 31

 Score = 37.1 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 2  VDKIPVTSKGFDKIQQELRWRQQEERPRIIK 32
          + K P+T +G   +++EL    +  RP++ +
Sbjct: 1  MIKYPMTVQGARALEEELTHLTKVVRPKLSQ 31


>gi|302187682|ref|ZP_07264355.1| hypothetical protein Psyrps6_15104 [Pseudomonas syringae pv.
           syringae 642]
          Length = 160

 Score = 36.7 bits (83), Expect = 0.97,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 56/151 (37%), Gaps = 17/151 (11%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEARAYGDLSEN----AEYQAAKELQNLNEGRMAELEN 68
           +K++ +L   ++  +     A  E     +  +     A Y AA + + + E R +    
Sbjct: 12  EKLKIDLDIAERAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARRVEEIRQSLALY 71

Query: 69  IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-------EADVQSGLVS 121
                +  D S         G  V + +        +  +G         E +    +++
Sbjct: 72  RKWPLKPFDESRGIQT----GDLVVVEDAGGQTHCLF--LGPDAAGLKVSEGNRLVTVIT 125

Query: 122 ISSPIARALIGKELGDIISVNAPGGEKTYEI 152
             +P+ ++L+GK   D + +   G  ++YEI
Sbjct: 126 ARAPLGQSLLGKFEDDAVQIVINGSGQSYEI 156


>gi|88859698|ref|ZP_01134338.1| hypothetical protein PTD2_21982 [Pseudoalteromonas tunicata D2]
 gi|88818715|gb|EAR28530.1| hypothetical protein PTD2_21982 [Pseudoalteromonas tunicata D2]
          Length = 161

 Score = 36.7 bits (83), Expect = 0.98,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 27/43 (62%)

Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           A  +  +++ S+P+  AL+GK L D +++   G ++T+ I +V
Sbjct: 118 AGQKVTVITPSAPLGAALVGKYLDDEVTIMVAGKKQTWSIDKV 160


>gi|330808358|ref|YP_004352820.1| GreA-GreB family transcriptional regulator [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327376466|gb|AEA67816.1| putative Transcription factor, GreA-GreB family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 162

 Score = 36.7 bits (83), Expect = 0.99,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 59/164 (35%), Gaps = 17/164 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN----AEYQAAKELQN 57
           ++K  V     DK++ +L   ++  +     A  E     +  +     A Y AA + + 
Sbjct: 3   MNKQTVHQLILDKLKIDLDIAERAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARR 62

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
           + E R A            D           G       ++   ++ +  +G   A ++ 
Sbjct: 63  VEEIRQALTLCQNLTLRPYDEQRGIQVGTLIGL------EDEDGRQQWLFLGPDAAGLKV 116

Query: 118 GL-------VSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
            L       ++  SP+ R L+GK  GD + +   G  + + + +
Sbjct: 117 SLVGQPITVITPRSPLGRGLLGKFEGDEVEIVVAGARQQFAVTE 160


>gi|222055636|ref|YP_002537998.1| GreA/GreB family elongation factor [Geobacter sp. FRC-32]
 gi|221564925|gb|ACM20897.1| GreA/GreB family elongation factor [Geobacter sp. FRC-32]
          Length = 159

 Score = 36.7 bits (83), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 20/37 (54%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +++  SP+   L+GK +GD + V        YEI +V
Sbjct: 122 VITPGSPLGSELMGKTIGDAVQVGIGPNRIEYEIAEV 158


>gi|149200475|ref|ZP_01877489.1| hypothetical protein LNTAR_13427 [Lentisphaera araneosa HTCC2155]
 gi|149136437|gb|EDM24876.1| hypothetical protein LNTAR_13427 [Lentisphaera araneosa HTCC2155]
          Length = 156

 Score = 36.7 bits (83), Expect = 0.99,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
           +++  SP+ +AL+GK  GD +S+   G  + Y +L 
Sbjct: 119 VITPPSPLGQALLGKYCGDEVSLELEGKIQKYRVLD 154


>gi|299538501|ref|ZP_07051784.1| hypothetical protein BFZC1_20923 [Lysinibacillus fusiformis ZC1]
 gi|298726088|gb|EFI66680.1| hypothetical protein BFZC1_20923 [Lysinibacillus fusiformis ZC1]
          Length = 308

 Score = 36.7 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 53/153 (34%), Gaps = 13/153 (8%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQ-NLN 59
           M +K  +T K +DK++Q+L  +   +       I     Y ++++N      K++Q    
Sbjct: 162 MEEKQEMTKKQYDKLKQQLSQQSMLKMTDEDYTIY----YEEINQNLANYLGKKIQLKGF 217

Query: 60  EGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGL 119
             +               I+    D    G      +  S  +  +      EA    G 
Sbjct: 218 VLKEESFTEKQLVISRFLITHCVADASIVGFLTEFSDAPSLTEDTW-----IEA---VGT 269

Query: 120 VSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
           +S S+    +L    + D +++  P     Y I
Sbjct: 270 ISQSTYEGASLPVIHIDDWVTIEQPESPYLYPI 302


>gi|91787829|ref|YP_548781.1| superfamily I DNA/RNA helicase [Polaromonas sp. JS666]
 gi|91697054|gb|ABE43883.1| Superfamily I DNA and RNA helicases and helicase subunits-like
            protein [Polaromonas sp. JS666]
          Length = 2096

 Score = 36.7 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 86   IAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPG 145
            +  G  V+    N  + ++  ++ D  ++ + G+V+  +P+A+AL+G   GD+  +   G
Sbjct: 2018 VEVGDRVTYCLVNEPNDRHCVLIVDSPSNAKMGIVNEETPLAQALLGLSPGDVGELEVAG 2077

Query: 146  GE-KTYEILQVL 156
             + +   +L+V 
Sbjct: 2078 QKNRQLRVLKVQ 2089


>gi|58261190|ref|XP_568005.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21]
 gi|134115795|ref|XP_773611.1| hypothetical protein CNBI2250 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|74682377|sp|Q5K8T2|SWR1_CRYNE RecName: Full=Helicase SWR1
 gi|50256237|gb|EAL18964.1| hypothetical protein CNBI2250 [Cryptococcus neoformans var.
            neoformans B-3501A]
 gi|57230087|gb|AAW46488.1| conserved hypothetical protein [Cryptococcus neoformans var.
            neoformans JEC21]
          Length = 1246

 Score = 36.7 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 24   QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELEN----IITRAEVIDIS 79
            +  RPR  +    ARA  ++ +  + QAA+  Q   E  + E E     +  R  V +  
Sbjct: 1140 EVTRPRAGEERELARALAEVEDEEDAQAARMAQGEGELDLQEFEEGPKAVAKRVRVFEPE 1199

Query: 80   TMSGDRIAF----GATVSLVEKNSGDKKNYQIVGDQE 112
                         G  V   +   G  + Y +   +E
Sbjct: 1200 NSGTPVTTEAGETGDVVEEYDDEPGSVEEYMLKWVEE 1236


>gi|95929275|ref|ZP_01312019.1| GreA/GreB family elongation factor [Desulfuromonas acetoxidans DSM
           684]
 gi|95134773|gb|EAT16428.1| GreA/GreB family elongation factor [Desulfuromonas acetoxidans DSM
           684]
          Length = 159

 Score = 36.7 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +++  SP+  AL+GK++GD++S +    +K +EI+ V
Sbjct: 123 VITPGSPLCSALLGKQVGDVVS-SGRATDKEFEIISV 158


>gi|300779277|ref|ZP_07089135.1| hypothetical protein HMPREF0204_14996 [Chryseobacterium gleum ATCC
           35910]
 gi|300504787|gb|EFK35927.1| hypothetical protein HMPREF0204_14996 [Chryseobacterium gleum ATCC
           35910]
          Length = 1137

 Score = 36.7 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 87  AFGATVSLVEKNSGDKKN--YQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAP 144
             G+T+        D+    Y +V           +S  +   + LIGK++GD +S+ +P
Sbjct: 651 MVGSTLYDSFFERYDEICFGYYVVYTIGDQKFREQISPGNEFHKNLIGKKIGDQVSIPSP 710

Query: 145 --GGEKTYEILQV 155
                 +  I+++
Sbjct: 711 MTNRINSVVIIEI 723


>gi|325955378|ref|YP_004239038.1| hypothetical protein Weevi_1769 [Weeksella virosa DSM 16922]
 gi|323437996|gb|ADX68460.1| hypothetical protein Weevi_1769 [Weeksella virosa DSM 16922]
          Length = 148

 Score = 36.7 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 17/147 (11%)

Query: 17  QELRWRQQEERPRIIKAISEARA--------YGDLSENAEYQAAKELQNLNEGRMAELEN 68
           +EL+     +     K I++ RA         GD  E       +E+ +L   +   L  
Sbjct: 10  EELQNILLNKLNHYDKLIADLRASNTDTKSSMGDKYETFREMLNQEINHLLHQKKMILAQ 69

Query: 69  IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIAR 128
                 V +++      + FG+ V     N     +   V      ++   +S  +P+A 
Sbjct: 70  QQ---VVENLTNDPHSIVDFGSFVVTDFGNFYISTSLGEVNFN--GIKFITISQQTPLAN 124

Query: 129 ALIGKELGDIISVNAPGGEKTYEILQV 155
           ALIG +      VN    +K Y I  +
Sbjct: 125 ALIGLKENQTFEVN----QKKYTIQAI 147


>gi|188533813|ref|YP_001907610.1| ATP-dependent RNA helicase HrpA [Erwinia tasmaniensis Et1/99]
 gi|188028855|emb|CAO96717.1| ATP-dependent helicase [Erwinia tasmaniensis Et1/99]
          Length = 1299

 Score = 36.7 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 7/144 (4%)

Query: 14  KIQQELRWRQQE-ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           K++ E+   + +  R  I+       A+ D   + E  +A+   N  +    +  + +  
Sbjct: 770 KLRAEVEELEHKSRRRDILVDDETLFAFYDQRISHEVVSARHFDNWWKVVSRDEPDRLNF 829

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
           A+ + I   +             + N   + +YQ     +AD  +  + +       ++ 
Sbjct: 830 AKEMLIKQGADKVSQLDYPNFWHQGNIKLRLSYQFEPGADADGVTVFIPLP------VLN 883

Query: 133 KELGDIISVNAPGGEKTYEILQVL 156
           +          PG  +   I  + 
Sbjct: 884 QVEESGFEWQIPGVRRELVIALIK 907


>gi|261333867|emb|CBH16862.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 803

 Score = 36.7 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 3/90 (3%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           +P+T++G   +++ L+    EER   I+  +E       +E      A+           
Sbjct: 74  VPLTAEG---LKERLKQLSAEERELSIENNTEECDEPSPNEFTTTHEARVALARVLHHGE 130

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSL 94
                   A  I     S       + V  
Sbjct: 131 NAGERKEVAMRIPSFCRSPAVSETQSIVVD 160


>gi|325276019|ref|ZP_08141838.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51]
 gi|324098851|gb|EGB96878.1| GreA/GreB family elongation factor [Pseudomonas sp. TJI-51]
          Length = 158

 Score = 36.7 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 55/157 (35%), Gaps = 21/157 (13%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN--------AEYQAAKELQNLNEGRM 63
             +I   L             A   A A  +++EN        A Y A  + +   + R 
Sbjct: 9   LAQIVATLEHDLDVLTRAAQTAYEAATAEENIAENKYDTLGLEASYLATGQARRSAQIRQ 68

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQI-----VGDQEADVQSG 118
           A L          D +      +     V+L ++    ++ +       +    AD    
Sbjct: 69  ALLIYQQLLLRDYDPARG----VQVSNLVTLEDEAGEQRRVFLGPEAAGLKIAAADGLVT 124

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +++  SP+ + L+GK + D +S+    G +   ++ V
Sbjct: 125 VITPRSPLGQVLLGKRVDDEVSL----GVQVLFVVDV 157


>gi|66046860|ref|YP_236701.1| hypothetical protein Psyr_3631 [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257567|gb|AAY38663.1| conserved hypothetical protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|330972328|gb|EGH72394.1| hypothetical protein PSYAR_17715 [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 160

 Score = 36.7 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 17/162 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN----AEYQAAKELQN 57
           ++K  V  +  DK+  +L   ++  +     A  E     +  +     A Y AA + + 
Sbjct: 1   MNKQDVLQRIIDKLNIDLDIAERAAQTAYETATHEENIAENKYDTLGLEASYLAAGQARR 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA---- 113
           + E R +         +  D S         G  V + + +      Y  +G   A    
Sbjct: 61  VEEIRQSLTLYRKWSLKPFDESRGIQT----GDLVVVEDASGQTH--YLFLGPDAAGLKV 114

Query: 114 ---DVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
              D    +++  +P+ + L+GK   D + +   G  ++YEI
Sbjct: 115 SAGDHLVTVITARAPLGQNLLGKFEDDAVQIVINGSGQSYEI 156


>gi|313206801|ref|YP_004045978.1| hypothetical protein Riean_1315 [Riemerella anatipestifer DSM
           15868]
 gi|312446117|gb|ADQ82472.1| hypothetical protein Riean_1315 [Riemerella anatipestifer DSM
           15868]
          Length = 147

 Score = 36.3 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 10/155 (6%)

Query: 2   VDKIPVTSKGFDKIQQELRWR-QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           ++K  +     ++ Q+ +    +  ER RI   I E   + D  + +    AK++Q   E
Sbjct: 1   MEKEIILKAIANEQQKIVDNLQKSVERYRIESDIDEDATH-DPEDFSHQTEAKDMQLRFE 59

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
                 +N +   E    +      I  G  +   +       +      +  DV    +
Sbjct: 60  QMANTAKNHLAFIEHS--AQEHHTSIESGCLIKTDKSYIFIGISVPPFKYEGKDVVC--I 115

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           S  +PI   +   ++GD +      G    E++++
Sbjct: 116 SEEAPIYSKIKNAKVGDKVDF----GSHQIEVIEI 146


>gi|170743564|ref|YP_001772219.1| hypothetical protein M446_5469 [Methylobacterium sp. 4-46]
 gi|168197838|gb|ACA19785.1| protein of unknown function DUF214 [Methylobacterium sp. 4-46]
          Length = 862

 Score = 36.3 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           LVS    + RAL G ++GD ++VN  G   T +I  +  +
Sbjct: 624 LVSFDDQLGRAL-GLKVGDSVTVNVLGRNLTVKIANLRHV 662


>gi|302696993|ref|XP_003038175.1| hypothetical protein SCHCODRAFT_72344 [Schizophyllum commune H4-8]
 gi|300111872|gb|EFJ03273.1| hypothetical protein SCHCODRAFT_72344 [Schizophyllum commune H4-8]
          Length = 267

 Score = 36.3 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 90  ATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSI------SSPIARALIGKELGDIISVNA 143
            +V + + +   ++ Y  +   E D   G +S          + R L GK  GD I +  
Sbjct: 25  WSVFIKDDDIQVERPYTPLYGLEED---GKMSFWIKKYPKGEVGRWLHGKSEGDRIEIRG 81

Query: 144 P 144
           P
Sbjct: 82  P 82


>gi|330884767|gb|EGH18916.1| transcription elongation factor GreB [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 31

 Score = 36.3 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 129 ALIGKELGDIISVNAPGGEKTYEILQVLW 157
           AL+ KE GD + VN P GEK + +  +++
Sbjct: 1   ALLKKEEGDEVLVNTPEGEKLWFVNSIVY 29


>gi|262402078|ref|ZP_06078642.1| hypothetical protein VOA_000043 [Vibrio sp. RC586]
 gi|262351724|gb|EEZ00856.1| hypothetical protein VOA_000043 [Vibrio sp. RC586]
          Length = 139

 Score = 36.3 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 31/84 (36%)

Query: 74  EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
                   +  RI  G TVSLV+ +        +   +      G V+  S +  AL+G+
Sbjct: 40  HPRSPIERAPQRIKLGDTVSLVDAHRQLSFQVTLTTSENQHEVQGGVTCDSLLGAALLGR 99

Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157
              ++ ++   G    + I  V  
Sbjct: 100 RQHEVFTLPIWGQHHCFAITHVQH 123


>gi|225569330|ref|ZP_03778355.1| hypothetical protein CLOHYLEM_05412 [Clostridium hylemonae DSM
           15053]
 gi|225162129|gb|EEG74748.1| hypothetical protein CLOHYLEM_05412 [Clostridium hylemonae DSM
           15053]
          Length = 370

 Score = 36.3 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 113 ADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
           AD  +G   I   +A++ +GK++GD ++V+   G   YEI
Sbjct: 87  ADGSAGGCVIPEALAKS-MGKKVGDKVTVDTALGRAEYEI 125


>gi|255746802|ref|ZP_05420748.1| hypothetical protein VCH_003197 [Vibrio cholera CIRS 101]
 gi|262155881|ref|ZP_06029003.1| hypothetical protein VIG_001097 [Vibrio cholerae INDRE 91/1]
 gi|262167104|ref|ZP_06034819.1| hypothetical protein VIJ_000265 [Vibrio cholerae RC27]
 gi|262189965|ref|ZP_06048274.1| hypothetical protein VIH_000338 [Vibrio cholerae CT 5369-93]
 gi|255735559|gb|EET90958.1| hypothetical protein VCH_003197 [Vibrio cholera CIRS 101]
 gi|262024490|gb|EEY43176.1| hypothetical protein VIJ_000265 [Vibrio cholerae RC27]
 gi|262030333|gb|EEY48975.1| hypothetical protein VIG_001097 [Vibrio cholerae INDRE 91/1]
 gi|262034150|gb|EEY52581.1| hypothetical protein VIH_000338 [Vibrio cholerae CT 5369-93]
 gi|327482928|gb|AEA77335.1| hypothetical protein VCLMA_A0014 [Vibrio cholerae LMA3894-4]
          Length = 140

 Score = 36.3 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 32/84 (38%)

Query: 74  EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
                   +  RI  G TVSLV+ +        +   +      G V+  S +  AL+G+
Sbjct: 40  HPRSPIERAPQRIKLGDTVSLVDAHRQLSFQVTLTTSENQHEVQGGVTCDSLLGAALLGR 99

Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157
              ++ +++  G    + I  V  
Sbjct: 100 RQHEVFTLSIWGQPHCFAITHVQH 123


>gi|153817616|ref|ZP_01970283.1| hypothetical protein A5C_0018 [Vibrio cholerae NCTC 8457]
 gi|126511884|gb|EAZ74478.1| hypothetical protein A5C_0018 [Vibrio cholerae NCTC 8457]
          Length = 135

 Score = 36.3 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 32/84 (38%)

Query: 74  EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
                   +  RI  G TVSLV+ +        +   +      G V+  S +  AL+G+
Sbjct: 35  HPRSPIERAPQRIKLGDTVSLVDAHRQLSFQVTLTTSENQHEVQGGVTCDSLLGAALLGR 94

Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157
              ++ +++  G    + I  V  
Sbjct: 95  RQHEVFTLSIWGQPHCFAITHVQH 118


>gi|229508301|ref|ZP_04397805.1| hypothetical protein VCF_003536 [Vibrio cholerae BX 330286]
 gi|229508860|ref|ZP_04398351.1| hypothetical protein VCE_000265 [Vibrio cholerae B33]
 gi|229515945|ref|ZP_04405402.1| hypothetical protein VCB_003603 [Vibrio cholerae TMA 21]
 gi|229517131|ref|ZP_04406577.1| hypothetical protein VCC_001152 [Vibrio cholerae RC9]
 gi|229520188|ref|ZP_04409615.1| hypothetical protein VIF_000703 [Vibrio cholerae TM 11079-80]
 gi|229530198|ref|ZP_04419587.1| hypothetical protein VCG_003311 [Vibrio cholerae 12129(1)]
 gi|229606575|ref|YP_002877223.1| hypothetical protein VCD_001484 [Vibrio cholerae MJ-1236]
 gi|229332331|gb|EEN97818.1| hypothetical protein VCG_003311 [Vibrio cholerae 12129(1)]
 gi|229342782|gb|EEO07773.1| hypothetical protein VIF_000703 [Vibrio cholerae TM 11079-80]
 gi|229346194|gb|EEO11166.1| hypothetical protein VCC_001152 [Vibrio cholerae RC9]
 gi|229347045|gb|EEO12007.1| hypothetical protein VCB_003603 [Vibrio cholerae TMA 21]
 gi|229354135|gb|EEO19067.1| hypothetical protein VCE_000265 [Vibrio cholerae B33]
 gi|229354574|gb|EEO19496.1| hypothetical protein VCF_003536 [Vibrio cholerae BX 330286]
 gi|229369230|gb|ACQ59653.1| hypothetical protein VCD_001484 [Vibrio cholerae MJ-1236]
          Length = 146

 Score = 36.3 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 32/84 (38%)

Query: 74  EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
                   +  RI  G TVSLV+ +        +   +      G V+  S +  AL+G+
Sbjct: 46  HPRSPIERAPQRIKLGDTVSLVDAHRQLSFQVTLTTSENQHEVQGGVTCDSLLGAALLGR 105

Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157
              ++ +++  G    + I  V  
Sbjct: 106 RQHEVFTLSIWGQPHCFAITHVQH 129


>gi|15640048|ref|NP_229675.1| hypothetical protein VC0016 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587258|ref|ZP_01677031.1| hypothetical protein VC274080_0015 [Vibrio cholerae 2740-80]
 gi|121727863|ref|ZP_01680922.1| hypothetical protein VCV52_0015 [Vibrio cholerae V52]
 gi|147673047|ref|YP_001218396.1| hypothetical protein VC0395_A2503 [Vibrio cholerae O395]
 gi|153802506|ref|ZP_01957092.1| hypothetical protein A51_B0011 [Vibrio cholerae MZO-3]
 gi|153821922|ref|ZP_01974589.1| hypothetical protein A5E_0044 [Vibrio cholerae B33]
 gi|153826423|ref|ZP_01979090.1| hypothetical protein A5A_0014 [Vibrio cholerae MZO-2]
 gi|153830851|ref|ZP_01983518.1| hypothetical protein A59_0049 [Vibrio cholerae 623-39]
 gi|227080253|ref|YP_002808804.1| hypothetical protein VCM66_0016 [Vibrio cholerae M66-2]
 gi|254291123|ref|ZP_04961920.1| hypothetical protein A33_0036 [Vibrio cholerae AM-19226]
 gi|254851581|ref|ZP_05240931.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|298501201|ref|ZP_07011000.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9654408|gb|AAF93194.1| hypothetical protein VC_0016 [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548504|gb|EAX58560.1| hypothetical protein VC274080_0015 [Vibrio cholerae 2740-80]
 gi|121629807|gb|EAX62222.1| hypothetical protein VCV52_0015 [Vibrio cholerae V52]
 gi|124121976|gb|EAY40719.1| hypothetical protein A51_B0011 [Vibrio cholerae MZO-3]
 gi|126520542|gb|EAZ77765.1| hypothetical protein A5E_0044 [Vibrio cholerae B33]
 gi|146314930|gb|ABQ19469.1| hypothetical protein VC0395_A2503 [Vibrio cholerae O395]
 gi|148873661|gb|EDL71796.1| hypothetical protein A59_0049 [Vibrio cholerae 623-39]
 gi|149739809|gb|EDM54004.1| hypothetical protein A5A_0014 [Vibrio cholerae MZO-2]
 gi|150422968|gb|EDN14918.1| hypothetical protein A33_0036 [Vibrio cholerae AM-19226]
 gi|227008141|gb|ACP04353.1| conserved hypothetical protein [Vibrio cholerae M66-2]
 gi|227011981|gb|ACP08191.1| conserved hypothetical protein [Vibrio cholerae O395]
 gi|254847286|gb|EET25700.1| conserved hypothetical protein [Vibrio cholerae MO10]
 gi|297540073|gb|EFH76135.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 163

 Score = 36.3 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 32/84 (38%)

Query: 74  EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
                   +  RI  G TVSLV+ +        +   +      G V+  S +  AL+G+
Sbjct: 63  HPRSPIERAPQRIKLGDTVSLVDAHRQLSFQVTLTTSENQHEVQGGVTCDSLLGAALLGR 122

Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157
              ++ +++  G    + I  V  
Sbjct: 123 RQHEVFTLSIWGQPHCFAITHVQH 146


>gi|294140717|ref|YP_003556695.1| hypothetical protein SVI_1946 [Shewanella violacea DSS12]
 gi|293327186|dbj|BAJ01917.1| conserved hypothetical protein [Shewanella violacea DSS12]
          Length = 182

 Score = 36.3 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +++ SSP+ + L+GK + D + +   G  K YEI+ V
Sbjct: 145 VITPSSPLGQILMGKLVYDSVQLTIGGALKHYEIISV 181


>gi|77460223|ref|YP_349730.1| GreA/GreB family elongation factor [Pseudomonas fluorescens Pf0-1]
 gi|77384226|gb|ABA75739.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1]
          Length = 160

 Score = 36.3 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 17/165 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN----AEYQAAKELQN 57
           ++K  V     DK++ +L   ++  +     A  E     +  +     A Y AA + + 
Sbjct: 1   MNKQTVHQLILDKLRVDLDIAERAAQTAYETATHEENIAENKYDTLGLEASYLAAGQAKR 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
           + E R +            D           G       ++   ++ +  +    A V+ 
Sbjct: 61  VEEIRQSLALCQNLTLRAYDAQRGIEVGALLGL------EDEKGREQWLFLAPDAAGVKV 114

Query: 118 GL-------VSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            +       ++  SP+ ++L+GK  GD + +   G  + + + +V
Sbjct: 115 DVVGQPITVITPRSPLGKSLLGKFEGDEVEILVAGTRQQFAVTEV 159


>gi|312212378|emb|CBX92461.1| predicted protein [Leptosphaeria maculans]
          Length = 545

 Score = 36.3 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M+++  +  +G +  Q+EL    Q   P I+K + E  A  D +   +     + + + +
Sbjct: 478 MLEEEYIKQQGEE--QKELDDLLQHLDPEILKRLKEDGAARDPANKEQEDGQVDSKKILD 535

Query: 61  GRMAEL 66
               +L
Sbjct: 536 VLKQDL 541


>gi|74318347|ref|YP_316087.1| flavohemoglobin [Thiobacillus denitrificans ATCC 25259]
 gi|74057842|gb|AAZ98282.1| flavohemoglobin [Thiobacillus denitrificans ATCC 25259]
          Length = 395

 Score = 36.3 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 102 KKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYE 151
           K+ Y+I    E D  +G VS        L G E GD + V  P G+ T E
Sbjct: 216 KRTYRITVKAEGDAPAGKVSHH------LHGAEPGDRVWVQPPTGDFTVE 259


>gi|167032442|ref|YP_001667673.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1]
 gi|166858930|gb|ABY97337.1| GreA/GreB family elongation factor [Pseudomonas putida GB-1]
          Length = 156

 Score = 36.3 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 55/157 (35%), Gaps = 21/157 (13%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN--------AEYQAAKELQNLNEGRM 63
              I   L             A   A A  +++EN        A Y A  + +   E R 
Sbjct: 7   LALIVATLEHDLDVLTRAAQTAYEAATAEENIAENKYDTLGLEASYLATGQARRSGEIRQ 66

Query: 64  AELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK-----KNYQIVGDQEADVQSG 118
           A L          D +      +     V+L ++  G +          +   E D    
Sbjct: 67  ALLIYQQLLLRDYDPARG----VQVSNLVTLEDELGGQRRLLLGPEAAGLKIGEGDGLVT 122

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +++  SP+ + L+GK++ D +++    G++   I+ V
Sbjct: 123 VITPRSPLGQQLMGKKIDDEVNL----GQQLLFIVDV 155


>gi|261213259|ref|ZP_05927541.1| hypothetical protein VCJ_003540 [Vibrio sp. RC341]
 gi|260837533|gb|EEX64236.1| hypothetical protein VCJ_003540 [Vibrio sp. RC341]
          Length = 139

 Score = 36.3 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 31/84 (36%)

Query: 74  EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
                   +  RI  G TVSLV+          ++     D   G V+  S +  AL+G+
Sbjct: 40  HPRSPIERAPQRIKLGDTVSLVDAQRKLSFQVTLITSGNQDEVHGGVTCDSLLGAALLGR 99

Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157
              ++ ++   G    + I  V  
Sbjct: 100 RQHEVFTLPIWGQHHCFAITHVQH 123


>gi|223934353|ref|ZP_03626274.1| conserved hypothetical protein [bacterium Ellin514]
 gi|223896816|gb|EEF63256.1| conserved hypothetical protein [bacterium Ellin514]
          Length = 159

 Score = 36.3 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 54/149 (36%), Gaps = 8/149 (5%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           D++ + L+  ++  R    +A  E+    +  +    +AA  L      ++ E+   I  
Sbjct: 12  DELTKSLQVLEKAARASHAEATHESSKAENKYDTRGLEAA-YLAGGQARQVKEIMESIKI 70

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGD------QEADVQSGLVSISSPI 126
            E +       +     A +  +E +   +  Y I           A  +  +++  SP+
Sbjct: 71  YEAMAPRNFGAEEPIDLAALVELEADGS-RNIYFIGPRSGGLEVNYARKEIIVITPQSPL 129

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
              LIGK+ G        G    Y I+ V
Sbjct: 130 GSNLIGKKKGQRWKTQVGGNTINYHIVSV 158


>gi|290509767|ref|ZP_06549138.1| ATP-dependent helicase HrpA [Klebsiella sp. 1_1_55]
 gi|289779161|gb|EFD87158.1| ATP-dependent helicase HrpA [Klebsiella sp. 1_1_55]
          Length = 1300

 Score = 36.3 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 46/144 (31%), Gaps = 7/144 (4%)

Query: 14  KIQQELRWRQQE-ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           K++ E+   + +  R  I+        + D   + +  +A+      +    E  +++  
Sbjct: 771 KLRAEIEELEHKSRRRDILVDDETLFEFYDQRISHDVISARHFDAWWKQASRETPDLLNF 830

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
            + + I   +             + N   + +YQ     +AD  +  + +       L+ 
Sbjct: 831 EKSMLIKEGAEQVSKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLP------LLN 884

Query: 133 KELGDIISVNAPGGEKTYEILQVL 156
           +          PG  +   I  + 
Sbjct: 885 QVEEAGFEWQIPGLRRELIIALIK 908


>gi|206576016|ref|YP_002238810.1| ATP-dependent helicase HrpA [Klebsiella pneumoniae 342]
 gi|288935741|ref|YP_003439800.1| ATP-dependent helicase HrpA [Klebsiella variicola At-22]
 gi|206565074|gb|ACI06850.1| ATP-dependent helicase HrpA [Klebsiella pneumoniae 342]
 gi|288890450|gb|ADC58768.1| ATP-dependent helicase HrpA [Klebsiella variicola At-22]
          Length = 1300

 Score = 36.3 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 46/144 (31%), Gaps = 7/144 (4%)

Query: 14  KIQQELRWRQQE-ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           K++ E+   + +  R  I+        + D   + +  +A+      +    E  +++  
Sbjct: 771 KLRAEIEELEHKSRRRDILVDDETLFEFYDQRISHDVISARHFDAWWKQASRETPDLLNF 830

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
            + + I   +             + N   + +YQ     +AD  +  + +       L+ 
Sbjct: 831 EKSMLIKEGAEQVSKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLP------LLN 884

Query: 133 KELGDIISVNAPGGEKTYEILQVL 156
           +          PG  +   I  + 
Sbjct: 885 QVEEAGFEWQIPGLRRELIIALIK 908


>gi|152970037|ref|YP_001335146.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954886|gb|ABR76916.1| helicase, ATP-dependent [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 1300

 Score = 35.9 bits (81), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 47/144 (32%), Gaps = 7/144 (4%)

Query: 14  KIQQELRWRQQE-ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           K++ E+   + +  R  I+        + D   + +  +A+   +  +    E  +++  
Sbjct: 771 KLRAEIEELEHKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKRASRETPDLLNF 830

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
            + + I   +             + N   + +YQ     +AD  +  + +       L+ 
Sbjct: 831 EKSMLIKEGAEQVSKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLP------LLN 884

Query: 133 KELGDIISVNAPGGEKTYEILQVL 156
           +          PG  +   I  + 
Sbjct: 885 QVEEAGFEWQIPGLRRELIIALIK 908


>gi|330015028|ref|ZP_08308058.1| ATP-dependent helicase HrpA [Klebsiella sp. MS 92-3]
 gi|328532116|gb|EGF58921.1| ATP-dependent helicase HrpA [Klebsiella sp. MS 92-3]
          Length = 1300

 Score = 35.9 bits (81), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 47/144 (32%), Gaps = 7/144 (4%)

Query: 14  KIQQELRWRQQEERPRIIKAISEAR-AYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           K++ E+   + + R R I    E    + D   + +  +A+      +    E  +++  
Sbjct: 771 KLRAEIEELEHKSRRRDILVDDETMFEFYDQRISHDVISARHFDKWWKQASRETPDLLNF 830

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
            + + I   +             + N   + +YQ     +AD  +  + +       L+ 
Sbjct: 831 EKSMLIKEGAEQVSKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLP------LLN 884

Query: 133 KELGDIISVNAPGGEKTYEILQVL 156
           +          PG  +   I  + 
Sbjct: 885 QVEEAGFEWQIPGLRRELIIALIK 908


>gi|262042892|ref|ZP_06016037.1| ATP-dependent helicase HrpA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039732|gb|EEW40858.1| ATP-dependent helicase HrpA [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 1300

 Score = 35.9 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 47/144 (32%), Gaps = 7/144 (4%)

Query: 14  KIQQELRWRQQEERPRIIKAISEAR-AYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           K++ E+   + + R R I    E    + D   + +  +A+      +    E  +++  
Sbjct: 771 KLRAEIEELEHKSRRRDILVDDETMFEFYDQRISHDVISARHFDKWWKQASRETPDLLNF 830

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
            + + I   +             + N   + +YQ     +AD  +  + +       L+ 
Sbjct: 831 EKSMLIKEGAEQVSKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLP------LLN 884

Query: 133 KELGDIISVNAPGGEKTYEILQVL 156
           +          PG  +   I  + 
Sbjct: 885 QVEEAGFEWQIPGLRRELIIALIK 908


>gi|238894496|ref|YP_002919230.1| ATP-dependent RNA helicase HrpA [Klebsiella pneumoniae NTUH-K2044]
 gi|238546812|dbj|BAH63163.1| ATP-dependent helicase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 1300

 Score = 35.9 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 47/144 (32%), Gaps = 7/144 (4%)

Query: 14  KIQQELRWRQQE-ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           K++ E+   + +  R  I+        + D   + +  +A+   +  +    E  +++  
Sbjct: 771 KLRAEIEELEHKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKRASRETPDLLNF 830

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
            + + I   +             + N   + +YQ     +AD  +  + +       L+ 
Sbjct: 831 EKSMLIKEGAEQVSKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLP------LLN 884

Query: 133 KELGDIISVNAPGGEKTYEILQVL 156
           +          PG  +   I  + 
Sbjct: 885 QVEEAGFEWQIPGLRRELIIALIK 908


>gi|319937472|ref|ZP_08011877.1| metal-dependent phosphohydrolase [Coprobacillus sp. 29_1]
 gi|319807312|gb|EFW03921.1| metal-dependent phosphohydrolase [Coprobacillus sp. 29_1]
          Length = 395

 Score = 35.9 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 4/124 (3%)

Query: 20  RWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDIS 79
           R     ER  I   +S     G L  N E  +     + N+      E       V D S
Sbjct: 155 RHLLFIERKGIGYNVSLQVLDGILCHNGEILSRIYKPDKNKTIAQFWEEYEKCWHVEDYS 214

Query: 80  TMSGDRIAFGATVSLVEKNSG----DKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135
                    G  V + +  S      +    +   +E D+   +V++     +++I + +
Sbjct: 215 KKIAPMTLEGCVVRISDVISYVGKDIEDAMTVGIIKEDDLPEEVVNVLGKDNKSMINRLI 274

Query: 136 GDII 139
           GDI+
Sbjct: 275 GDIV 278


>gi|254427436|ref|ZP_05041143.1| hypothetical protein ADG881_666 [Alcanivorax sp. DG881]
 gi|196193605|gb|EDX88564.1| hypothetical protein ADG881_666 [Alcanivorax sp. DG881]
          Length = 128

 Score = 35.9 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 41/90 (45%)

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L  ++ + E++          A G  VSL      ++ ++ +    +  +    +S+ SP
Sbjct: 33  LMIVMEKIEMLRGVERELAAAAVGDRVSLFSFEDEEQMSFTLAEAGKRSLGDKDISVLSP 92

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           +  AL+G   G +++VN  G    Y +L+V
Sbjct: 93  LGAALLGALPGAVVNVNFLGHGHRYLLLKV 122


>gi|308464453|ref|XP_003094493.1| CRE-CYN-8 protein [Caenorhabditis remanei]
 gi|308247294|gb|EFO91246.1| CRE-CYN-8 protein [Caenorhabditis remanei]
          Length = 435

 Score = 35.9 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 2/98 (2%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T +   K Q+EL  R+  +   + +   E+R      E  E +  +EL    E    EL
Sbjct: 311 LTLEEHKKRQEELEERK--KLQALREKEDESRRLRLEKERQERETQRELSRQKEDAKREL 368

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104
           E     A+     + S       + V+  E  S  ++ 
Sbjct: 369 ERQERSAKKSRGRSPSSSSSRSASPVTKKEIESDREET 406


>gi|307200398|gb|EFN80630.1| hypothetical protein EAI_05549 [Harpegnathos saltator]
          Length = 1203

 Score = 35.9 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEAR-----AYGDLSENAEYQAAKELQN 57
           ++  +  K  +K ++EL   ++  R R ++ I EAR        +    AE +  +E + 
Sbjct: 296 EQELLRQKEAEKKRKELERLEEMARQRELERIREAREKQRQEELERRRLAELRTKEEKRR 355

Query: 58  LNEGRMAELEN 68
            +E R  E   
Sbjct: 356 EDEARQREERQ 366


>gi|300790979|ref|YP_003771270.1| FAD-dependent oxidoreductase [Amycolatopsis mediterranei U32]
 gi|299800493|gb|ADJ50868.1| FAD-dependent oxidoreductase [Amycolatopsis mediterranei U32]
          Length = 397

 Score = 35.9 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 39/128 (30%), Gaps = 7/128 (5%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
           +T  G +K++ EL      +R    + I   R         ++             + + 
Sbjct: 235 ITLAG-EKLRAELLHLVARDRTPAAEIIRATREIYPAWPTYDFPTVPVWHRGRMVIIGDA 293

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE------ADVQSGLV 120
            +  + A     S    D +  G  +  V         Y+ +  +       A  ++G  
Sbjct: 294 AHATSPAAGQGASMAIEDAVTLGKCLRDVPDIERALSTYESLRRERVEAVVAAGKRNGEQ 353

Query: 121 SISSPIAR 128
            +  P+ R
Sbjct: 354 KVIGPVGR 361


>gi|229524918|ref|ZP_04414323.1| hypothetical protein VCA_002527 [Vibrio cholerae bv. albensis
           VL426]
 gi|229338499|gb|EEO03516.1| hypothetical protein VCA_002527 [Vibrio cholerae bv. albensis
           VL426]
          Length = 146

 Score = 35.9 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 32/84 (38%)

Query: 74  EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
                   +  RI  G TVSLV+ +        +   +      G V+  S +  AL+G+
Sbjct: 46  HPRSPIERAPQRIKLGDTVSLVDAHRQLSFQVTLTTSENQHEVQGGVTCDSLLGAALLGR 105

Query: 134 ELGDIISVNAPGGEKTYEILQVLW 157
              ++ +++  G    + I  V  
Sbjct: 106 RQHEVFTLSIWGQAHCFAITHVQH 129


>gi|71749478|ref|XP_828078.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70833462|gb|EAN78966.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 803

 Score = 35.9 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 3/90 (3%)

Query: 5   IPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMA 64
           +P+T++G   +++ L+    EER   IK  +E       +E      A+           
Sbjct: 74  VPLTAEG---LKERLKQLSAEERELSIKNNTEECDEPSPNEFTTTHEARVALARVLHHGE 130

Query: 65  ELENIITRAEVIDISTMSGDRIAFGATVSL 94
                   A  I     S       + V  
Sbjct: 131 NAGEREEVAMRIPSFCRSPAVSETQSIVVD 160


>gi|62913875|gb|AAY21912.1| putative MADS box protein [Musa acuminata]
          Length = 233

 Score = 35.9 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 1/121 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P++ K   +++++L     + R R  + I E        E    +  K+L++  E   A 
Sbjct: 109 PLSVKELQQLERQLESALSQARQRKSQLILEQMEELRKKERHLGEINKQLRDQIEVEGAT 168

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+         D    S    A  +  + +++    +  Y      +A +    +  ++ 
Sbjct: 169 LKAFQGSW-CSDAMIGSNAFAAQPSHSAGMDREPMLRIGYHQFVPADAAIPRNPIGENNF 227

Query: 126 I 126
           +
Sbjct: 228 M 228


>gi|260431126|ref|ZP_05785097.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414954|gb|EEX08213.1| conserved hypothetical protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 155

 Score = 35.9 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 12/149 (8%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEA---RAYGDLSENAEYQAAKELQNLNEGRMAE---L 66
             I   L   + +E     +A  EA    +  D  E  +       +   +   A    +
Sbjct: 12  KAIIDRLMALEAQEL-EAAQAHHEAFLKESQLDDREVHDKDDIAASRESADLAAAFDGPV 70

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
                + +VI+ +            V  +              D + D   G +S  SPI
Sbjct: 71  HAHHAKIDVIENTDFGPKETVEPGAVVKLNDRHFVVCVSTTRFDVDGDTYMG-ISPQSPI 129

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
             A+ G + GD+       G   +EI ++
Sbjct: 130 YLAMAGLQKGDVF---THNGT-EFEIQEI 154


>gi|215260626|gb|ACJ64680.1| MADS-box protein MADS3 [Musa acuminata AAA Group]
          Length = 242

 Score = 35.9 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 44/121 (36%), Gaps = 1/121 (0%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P++ K   +++++L     + R R  + I E        E    +  K+L++  E   A 
Sbjct: 118 PLSVKELQQLERQLESALSQARQRKSQLILEQMEELRKKERHLGEINKQLRDQIEVEGAT 177

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSP 125
           L+         D    S    A  +  + +++    +  Y      +A +    +  ++ 
Sbjct: 178 LKAFQGSW-CSDAMIGSNAFAAQPSHSAGMDREPMLRIGYHQFVPADAAIPRNPIGENNF 236

Query: 126 I 126
           +
Sbjct: 237 M 237


>gi|291545954|emb|CBL19062.1| alanyl-tRNA synthetase [Ruminococcus sp. SR1/5]
          Length = 880

 Score = 35.5 bits (80), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 3/124 (2%)

Query: 29  RIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII-TRAEVIDISTMSGDRIA 87
            + K I E + YG   E   +Q A E Q +      E+ N +   A V D   ++     
Sbjct: 402 DLTKEILEEKGYGIDEE--GFQKAMEEQRVKARTAREVTNYMGADATVYDDIDVNVTTEF 459

Query: 88  FGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGE 147
            G      +           + D   + Q G V +      A +G + GD   +    G+
Sbjct: 460 VGYDHLTFDSKVTVLTTETEIVDSLTEGQKGTVFVEQTPFYATMGGQEGDTGVIETANGK 519

Query: 148 KTYE 151
              E
Sbjct: 520 FVVE 523


>gi|156975529|ref|YP_001446436.1| hypothetical protein VIBHAR_03261 [Vibrio harveyi ATCC BAA-1116]
 gi|156527123|gb|ABU72209.1| hypothetical protein VIBHAR_03261 [Vibrio harveyi ATCC BAA-1116]
          Length = 159

 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 59/147 (40%), Gaps = 8/147 (5%)

Query: 17  QELRWRQQEERPRIIKAISEARAYGDLSE---NAEYQAAKELQNLNEGRMAELENIITRA 73
           Q+L  +         +AI  A     + E   +     A  L +    R+ E E  + + 
Sbjct: 12  QQLEDKLHVAHASTQRAIDAATDEETVPEHKYDTLALEASYLAHGQAMRVQESEEELRQY 71

Query: 74  EVIDISTMSGDRIAFGATVSLVEKNSGDKKNY----QIVGDQEADVQS-GLVSISSPIAR 128
             + +      RIA GA V LV++N  +K  +          E   +   +++  SP+  
Sbjct: 72  RTLVLRDFVDARIAVGAYVELVDENDVEKAFFIGPCSGGLTVEWQGKEVFVLTPKSPLGC 131

Query: 129 ALIGKELGDIISVNAPGGEKTYEILQV 155
           AL+GKE G+ I V        YE++ V
Sbjct: 132 ALVGKEEGEDIDVKIGDKTTCYEVVTV 158


>gi|157961823|ref|YP_001501857.1| GreA/GreB family elongation factor [Shewanella pealeana ATCC
           700345]
 gi|157846823|gb|ABV87322.1| GreA/GreB family elongation factor [Shewanella pealeana ATCC
           700345]
          Length = 170

 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 23/38 (60%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +V++ SP+   +  K  GD  S+N  G ++ YEI++V 
Sbjct: 133 VVTLESPLGITMANKRQGDDFSLNVAGNKREYEIIEVK 170


>gi|146283249|ref|YP_001173402.1| transcription elongation factor [Pseudomonas stutzeri A1501]
 gi|145571454|gb|ABP80560.1| transcription elongation factor [Pseudomonas stutzeri A1501]
          Length = 158

 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 11/161 (6%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           ++K  +  +    ++ +    +         A        +  +    +AA  L +    
Sbjct: 1   MNKRALQQQIIATLEADREVAKAVLAATHEAATHAESKAENKYDTRGLEAA-YLADGQRR 59

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG--- 118
           R+ E+E  +     +     S  R+  GA   L+  +    + +  +G   A ++     
Sbjct: 60  RLHEIETALAAYRNLQAGVSSDGRVRVGA---LLCLDHDGAERWFFLGPDAAGLKLQHDG 116

Query: 119 ----LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
               +++  SP+ + L+G+EL D + +   G  + YE+LQ+
Sbjct: 117 REILVITARSPLGQGLLGRELRDEVELRVHGQLQRYEVLQI 157


>gi|290465671|gb|ADD25180.1| AGL6-1 [Cabomba caroliniana]
          Length = 229

 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 3/114 (2%)

Query: 6   PVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           P++ K   +++++L       R R  + + E        E       K+L+N  E     
Sbjct: 102 PLSVKELQQLEKQLETALSLARQRKTQVLMEQMDELRKRERHLGDVNKQLKNQLESEGQF 161

Query: 66  LENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGD---KKNYQIVGDQEADVQ 116
           L +I   +   D S +     +F    +   +       +  Y      E D +
Sbjct: 162 LRSIPGPSSWPDNSGVVVANNSFNMNAAQDNQMEPVPTLQIRYHPFVAHENDAR 215


>gi|262316906|emb|CBA18133.1| putative elongation factor [Paenibacillus phage phiBP]
          Length = 72

 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 5/68 (7%)

Query: 7  VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
          +T +G  KI++EL +    + P + + +   R +G      + + A E ++  +GR+  L
Sbjct: 5  LTVEGVKKIKEELEYVISSKLPEVEQRLELIRKHG-----GDIKDATEERDFYKGRIPYL 59

Query: 67 ENIITRAE 74
          EN++  A+
Sbjct: 60 ENMLATAK 67


>gi|321400099|ref|NP_001189470.1| stromal interaction molecule 1b [Danio rerio]
          Length = 642

 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 40/134 (29%), Gaps = 8/134 (5%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K+ +  +    +++E    ++E R  I  A  EA+   +L E  E + ++      E
Sbjct: 255 MQQKLQIAQEEHHTVEEEKVNLEREMRSEIEAAKEEAQRLRELREGTENELSRRKYAEQE 314

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
                    +  A       +                    +   Q    ++   +  L+
Sbjct: 315 LDQ------VRMALKKAERELELRSGWSPPDALQKWLQLTHEVEVQYYNIKKQSAERQLI 368

Query: 121 SISSPIARALIGKE 134
              +      I K+
Sbjct: 369 --VAKEGAEKIKKK 380


>gi|26988584|ref|NP_744009.1| hypothetical protein PP_1854 [Pseudomonas putida KT2440]
 gi|24983358|gb|AAN67473.1|AE016374_5 conserved hypothetical protein [Pseudomonas putida KT2440]
          Length = 156

 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 21/153 (13%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSEN--------AEYQAAK 53
           +DK          I   L             A   A A  +++EN        A Y A  
Sbjct: 1   MDK----PHLLALIVATLEHDLDVLTRAAQTAYEAATAEENIAENKYDTLGLEASYLATG 56

Query: 54  ELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQ-- 111
           + +   E R A +          D +      +     V+L  ++ G ++ +        
Sbjct: 57  QARRSAEIRQALVIYQQLLLRDYDPARG----VQVSNLVTLENEDGGQRRLFLGPEAAGL 112

Query: 112 ---EADVQSGLVSISSPIARALIGKELGDIISV 141
              E D    +++  SP+ + L+GK + D + +
Sbjct: 113 KIGEGDGLVTVITPRSPLGQQLLGKRVDDEVHL 145


>gi|326428629|gb|EGD74199.1| hypothetical protein PTSG_06211 [Salpingoeca sp. ATCC 50818]
          Length = 2746

 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 4/98 (4%)

Query: 7    VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
            +T  G DK+Q EL   + E    I + ++      D+    +++ A+E   +    +  L
Sbjct: 1860 LTRAGEDKLQSELHRLRYELAHAIERQLNHVDDLLDV---CDFRCAREWLGIIGECVMLL 1916

Query: 67   ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKN 104
                  A     +           +V   +  +  +  
Sbjct: 1917 PPAAQTAGAR-YAREHWQAKWRERSVEQKQDRALTEMR 1953


>gi|254242222|ref|ZP_04935544.1| hypothetical protein PA2G_02956 [Pseudomonas aeruginosa 2192]
 gi|126195600|gb|EAZ59663.1| hypothetical protein PA2G_02956 [Pseudomonas aeruginosa 2192]
          Length = 220

 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 13/149 (8%)

Query: 11  GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
              K ++E +  QQ ER  I     + ++  D     E QAA                 I
Sbjct: 68  ARQKQEKERKSLQQRERREIAVRKEKLKSRAD--HLREAQAAFNEFIRWRDWDR---PCI 122

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISSPIARA 129
           +     D    +G   + G+   L    +   K      + ++ DV +  +++ + I   
Sbjct: 123 SCGRFHDGQYHAGHYRSVGSHPELRFDENNVHKQCAPCNNHKSGDVVNYRINLVAKIGAE 182

Query: 130 LIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + +  G       P   + + + ++  I
Sbjct: 183 AVARLEG-------PHDARKWTVEEIKAI 204


>gi|296283928|ref|ZP_06861926.1| hypothetical protein CbatJ_09906 [Citromicrobium bathyomarinum
           JL354]
          Length = 187

 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 13/79 (16%)

Query: 12  FDKIQQELRWRQQEE-------------RPRIIKAISEARAYGDLSENAEYQAAKELQNL 58
             ++++ L   ++E              R R+ + +  AR   D   NAE  A  E    
Sbjct: 69  LAQLRERLDEVERERDLLETALSSATDARGRLERDLRTAREEADSRSNAEASAQAERIAT 128

Query: 59  NEGRMAELENIITRAEVID 77
            E R A+L++ +  A++ +
Sbjct: 129 LEKRCADLQHRLEDAQMQE 147


>gi|332535604|ref|ZP_08411372.1| hypothetical protein PH505_db00100 [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332034988|gb|EGI71509.1| hypothetical protein PH505_db00100 [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 158

 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           + ++  L  +    +     A   A    +++EN       E   L +G+   + +    
Sbjct: 8   EHLRFALEAQLTTAKVAAKTAHDTATHEENIAENKYDTLGLEAAYLAQGQAQRVNDCYKS 67

Query: 73  AEVIDISTM--SGDRIAFGATVSLVEKNSGDKKNYQ--IVGDQEADVQSGLVSISSP--- 125
            E+ + +      D+IA G+ V L   N+  K  Y     G    +V+   +++ +P   
Sbjct: 68  IELFEPAFNEKPTDKIAIGSLVCLENDNAAQKWFYLGPAAGGLTVNVKEHAIAVVTPGAP 127

Query: 126 IARALIGKELGDIISVNAPGGEKTYEILQV 155
           + + L+ K++ D I++   G    Y ++++
Sbjct: 128 MGKQLLNKQIDDEITLTIAGKAHEYVVVEI 157


>gi|323172796|gb|EFZ58428.1| ATP-dependent helicase HrpA [Escherichia coli LT-68]
          Length = 1281

 Score = 35.1 bits (79), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 47/144 (32%), Gaps = 7/144 (4%)

Query: 14  KIQQELRWRQQE-ERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITR 72
           K++ E+   + +  R  I+        + D   + +  +A+   +  +    E  +++  
Sbjct: 752 KLRAEIEELEHKTRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNF 811

Query: 73  AEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIG 132
            + + I   +             + N   + +YQ     +AD  +  + +       L+ 
Sbjct: 812 EKSMLIKEGAEKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLP------LLN 865

Query: 133 KELGDIISVNAPGGEKTYEILQVL 156
           +          PG  +   I  + 
Sbjct: 866 QVEESGFEWQIPGLRRELVIALIK 889


>gi|126662004|ref|ZP_01733003.1| hypothetical protein FBBAL38_01595 [Flavobacteria bacterium BAL38]
 gi|126625383|gb|EAZ96072.1| hypothetical protein FBBAL38_01595 [Flavobacteria bacterium BAL38]
          Length = 149

 Score = 35.1 bits (79), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 51/142 (35%), Gaps = 7/142 (4%)

Query: 15  IQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAE 74
           + +++   +         A ++A+                 Q     ++AE+       +
Sbjct: 15  LSEKINELRFMISDLAQDAQNDAKGSAGDKHETALSMMHLEQEKLNQKLAEIIEQKNVVD 74

Query: 75  VIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKE 134
            ID   +   +IA G+ V   E           +  +   + +  VS  SP+   L+GK 
Sbjct: 75  KIDADAI-HTKIALGSLVQTNEMLFYISAALPKIQLENKTIIA--VSPQSPLGSQLLGKS 131

Query: 135 LGDIISVNAPGGEKTYEILQVL 156
           LGD + +NA      ++I  + 
Sbjct: 132 LGDEVVINA----NRFQIKSIQ 149


>gi|268570104|ref|XP_002648418.1| Hypothetical protein CBG24681 [Caenorhabditis briggsae]
          Length = 321

 Score = 35.1 bits (79), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 50/154 (32%), Gaps = 9/154 (5%)

Query: 11  GFDKIQQELRWRQQEERPRIIKAISEARAYGDL--SENAEYQAAKELQNLNEGRMAELEN 68
           G +K+++E R   +  R  + + +  +    D+  ++N    +A ++ +     ++    
Sbjct: 86  GVEKLREEFRGLAKYVRSDMTQNVFNSNHSTDINITKNRTRISATKMFHAKINALSNWSP 145

Query: 69  IITRAEVIDISTMSGDRIAFGATVSLVE----KNSGDKKNYQIVGDQEADVQSGLVSISS 124
            +     +  ++         ++V          +  ++   +    E            
Sbjct: 146 HLQVLTSMPTTSDVQCIPRNDSSVVKDFWWMVIQNKVEQIVMLCKTVETGKLKCAQYWPG 205

Query: 125 PIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
                   KE    + V    G KT  I+ + +I
Sbjct: 206 AQGE---KKEFKSGVVVENMSGTKTGTIVAIEYI 236


>gi|260775310|ref|ZP_05884207.1| transcription elongation factor [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608491|gb|EEX34656.1| transcription elongation factor [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 158

 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           LV+  SP+  A+ GK +GD +         +YE+  +
Sbjct: 121 LVTFDSPLGFAMKGKSMGDEVEYQVATTTFSYEVDTI 157


>gi|152983336|ref|YP_001352647.1| hypothetical protein mma_0957 [Janthinobacterium sp. Marseille]
 gi|151283413|gb|ABR91823.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 148

 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 14/120 (11%)

Query: 39  AYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKN 98
           A  D  E+ ++         +E   +    + +    ID             TV      
Sbjct: 33  AKRDSEESQDHHEFSIRFAESEVAQSFETTLHS---HIDALNKLKTIDFSPKTVVEEGAI 89

Query: 99  SGDKKNYQIV------GDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
              +  + ++       D +     G +S  +P+ +A+ GK   D  +     G K + I
Sbjct: 90  IFLRDRWFVIAVATTQFDCDGTPFMG-ISTDAPLFKAMEGKRPDDWFTW----GGKEFRI 144


>gi|149191961|ref|ZP_01870191.1| hypothetical protein VSAK1_12150 [Vibrio shilonii AK1]
 gi|148834187|gb|EDL51194.1| hypothetical protein VSAK1_12150 [Vibrio shilonii AK1]
          Length = 158

 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 91  TVSLVEKNSGDKKNYQIVGDQ----EADVQSGLVSISSPIARALIGKELGDIISVNAPGG 146
           TV  +E        + ++         +    +V+  SP+ RALIGK + D + V+    
Sbjct: 89  TVVEIEDEDEVVSRFFVLPCAGGLTIEEPTIKVVTPHSPLGRALIGKSIDDEVVVSIGEK 148

Query: 147 EKTYEIL 153
              Y I+
Sbjct: 149 LTHYAII 155


>gi|317480193|ref|ZP_07939302.1| collagen triple helix repeat protein [Bacteroides sp. 4_1_36]
 gi|316903641|gb|EFV25486.1| collagen triple helix repeat protein [Bacteroides sp. 4_1_36]
          Length = 575

 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 47/132 (35%), Gaps = 1/132 (0%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            +K  VT++G  K   E    + E   +  +        G ++   +  +A+E +   E 
Sbjct: 117 AEKERVTAEGLRK-TAETERGKAEAVRQTSETGRATAETGRVTAEGKRVSAEEERKNAET 175

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
             A  E+    AE   ++  +G   A G  V+     S  +             ++G V+
Sbjct: 176 VRANAESTRQTAETGRVNAETGRATAEGKRVTAENARSTAEDTRNSAETNRQTAETGRVN 235

Query: 122 ISSPIARALIGK 133
             S    A  G+
Sbjct: 236 AESGRVNAESGR 247


>gi|225155838|ref|ZP_03724324.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
 gi|224803388|gb|EEG21625.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]
          Length = 193

 Score = 34.8 bits (78), Expect = 3.7,   Method: Composition-based stats.
 Identities = 32/159 (20%), Positives = 61/159 (38%), Gaps = 17/159 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK  + +    +++ EL      +    + A  EA +     EN     ++E   L EG
Sbjct: 29  MDKEHLRAAIIAELEAELA----TQTRAALDAHDEATSEESKPENKYDMHSQEAAYLAEG 84

Query: 62  RMAELENIITRAEVIDISTMSGDRIAF--GATVSLVEKNSGDKKNYQIVGDQEA------ 113
           +      I    E     +++        G+ V L +  +    +Y I   +        
Sbjct: 85  QARLAGEIARAIESYRALSLATSATHVETGSLVRLEDTATRRPIHYFIGPQRGGLTLTVA 144

Query: 114 --DVQSGLVSISSP---IARALIGKELGDIISVNAPGGE 147
             D +S  +++ +P   + R L+G  LGD IS+    G+
Sbjct: 145 ARDGRSVEITVLTPAAPLGRQLLGHTLGDEISLPGRRGK 183


>gi|197116582|ref|YP_002137009.1| transcription elongation factor GreA/GreB domain-containing protein
           [Geobacter bemidjiensis Bem]
 gi|197085942|gb|ACH37213.1| transcription elongation factor GreA/GreB domain protein [Geobacter
           bemidjiensis Bem]
          Length = 151

 Score = 34.8 bits (78), Expect = 3.8,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 17/152 (11%)

Query: 13  DKIQQELRWRQQEERPRIIKAISEARAYGDLSENA--EYQAAKELQNLNEGRMAELENII 70
           +++  +L       R     A  E     +  +    E     + Q      +    +  
Sbjct: 7   ERLATDLAVLTNAARAAHEAATHEENIPDNKYDTLSLEASYVAQGQANRAQEIRRALHAY 66

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSG-------LVSIS 123
              E+ + S     R+    T+   +           +G QE  ++         ++++ 
Sbjct: 67  RSLELQEFSAGQAIRLTALVTLEGEDGGGKT----FFIGPQEGGLKLEIEGKEVVVITLG 122

Query: 124 SPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           SP+ + LIGK  GD   +    G   YEI+ V
Sbjct: 123 SPMGQELIGKSAGDEARI----GRVAYEIVAV 150


>gi|218890082|ref|YP_002438946.1| ninG protein [Pseudomonas aeruginosa LESB58]
 gi|218770305|emb|CAW26070.1| ninG protein [Pseudomonas aeruginosa LESB58]
          Length = 193

 Score = 34.8 bits (78), Expect = 3.8,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 50/149 (33%), Gaps = 13/149 (8%)

Query: 11  GFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENII 70
              K ++E +  QQ ER  I     + ++  D     E QAA                 I
Sbjct: 41  ARQKQEKERKSLQQRERREIAVRKEKLKSRAD--HLREAQAAFNEFIRWRDWDR---PCI 95

Query: 71  TRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEA-DVQSGLVSISSPIARA 129
           +     D    +G   + G+   L        K      + ++ D+ +  +++ + I  A
Sbjct: 96  SCGRFHDGQYHAGHYRSVGSHPELRFDEDNVHKQCAPCNNHKSGDIVNYRINLVAKIGDA 155

Query: 130 LIGKELGDIISVNAPGGEKTYEILQVLWI 158
            + +  G       P   + + + ++  I
Sbjct: 156 AVARLEG-------PHDARKWTVEEIKAI 177


>gi|119946279|ref|YP_943959.1| GreA/GreB family elongation factor [Psychromonas ingrahamii 37]
 gi|119864883|gb|ABM04360.1| GreA/GreB family elongation factor [Psychromonas ingrahamii 37]
          Length = 160

 Score = 34.8 bits (78), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 9/77 (11%)

Query: 86  IAFGATVSLVEKNSGDKKNYQ-------IVGDQEADVQSGLVSISSPIARALIGKELGDI 138
           +  GA V L + +  +K  +         V   E D+   +V+  SP+  A+  + +GD 
Sbjct: 85  VCLGALVLLHDLDDNEKYVFYGPSAGGLKVQFAEKDIV--VVTPGSPLGAAIKDRSVGDE 142

Query: 139 ISVNAPGGEKTYEILQV 155
           IS+        YEI ++
Sbjct: 143 ISLFIGNKVIEYEIAEI 159


>gi|86131965|ref|ZP_01050561.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
 gi|85817299|gb|EAQ38479.1| conserved hypothetical protein [Dokdonia donghaensis MED134]
          Length = 152

 Score = 34.8 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 17/153 (11%)

Query: 14  KIQQEL-----RWRQQEERPRIIKAISEARAYGDLSENAEYQAAK-ELQNLNEGRMAELE 67
           +I++EL           +R  +++ I +  A     E       K E          E  
Sbjct: 5   EIKEELLKACKEHLM--QRRDVVQQILDNVATSLREETKSTAGDKHETGRAMLQLERENA 62

Query: 68  NIITRAEVIDISTMSGDRIAF-GATVSLVEKNSGDKKNYQIVGDQEADVQSGL----VSI 122
                A           ++      V L       +  Y I     A    GL    + I
Sbjct: 63  GKQLAAIEKLEQIFLRIKLDLSEGPVHLGSVVVTSQACYFISIPVGAIKVDGLTFYAIGI 122

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SPI + L+GK  GD +       E   +I  +
Sbjct: 123 GSPIGQLLMGKREGDEVRFR----ESVIKITTI 151


>gi|312222441|emb|CBY02381.1| hypothetical protein [Leptosphaeria maculans]
          Length = 866

 Score = 34.8 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 19/141 (13%)

Query: 9   SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELEN 68
           ++   +++ E    ++E +    +   EA+     +E  + QA K  + + +G    L  
Sbjct: 463 AEQLKELKAEAAKLKEEGKDASEQ---EAKIKKIETEGIDEQARKYFKGMVDGEPKALGI 519

Query: 69  IITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK-------------NYQIVGDQEADV 115
                   D+S     +      +   + +   +                ++  + E  V
Sbjct: 520 WK---RFRDLSIEKYKQTYARLNIRYDDYSGESQVKDESMEEAAKIMWEKKVCEESEGAV 576

Query: 116 QSGLVSISSPIARALIGKELG 136
              L S S  + +A+I K+ G
Sbjct: 577 IVDLTSHSKKLGKAVIKKKDG 597


>gi|194222248|ref|XP_001916271.1| PREDICTED: similar to Bromodomain adjacent to zinc finger domain
            protein 2B (hWALp4) [Equus caballus]
          Length = 2170

 Score = 34.8 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 26/65 (40%)

Query: 10   KGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENI 69
            +G ++I +E    ++ E  +I + I E         N ++   KE     +     L+  
Sbjct: 1404 EGLEEIAKEREKLKKAESIQIKEEIFETSEDTINCSNPDHCEQKEDPKEKDNTNLFLQKP 1463

Query: 70   ITRAE 74
             + ++
Sbjct: 1464 GSFSK 1468


>gi|90412348|ref|ZP_01220352.1| hypothetical protein P3TCK_11204 [Photobacterium profundum 3TCK]
 gi|90326610|gb|EAS43009.1| hypothetical protein P3TCK_11204 [Photobacterium profundum 3TCK]
          Length = 166

 Score = 34.8 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 61/162 (37%), Gaps = 17/162 (10%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +DK  +     +++   L    Q      ++A + A    +++EN     A E   L  G
Sbjct: 7   MDKTLL----LEQMISALEETHQGAVEAALRAYNTATNDENVAENQYDTLALEASYLAHG 62

Query: 62  RMAELENIITRAEVID----ISTMSGDRIAFGATVSLVEKNSGDKKNYQI-------VGD 110
           +   +                       +  G  + L++++  +K  +         V  
Sbjct: 63  QAQRVAECEADILAFKKLNIADDTEKKVVTLGCLIQLIDEDDNNKYVFFAPSAGGLKVRF 122

Query: 111 QEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
            E D+   +V+ +SP+  ALIG+EL D + V+       YEI
Sbjct: 123 DEKDII--VVTPTSPLGEALIGRELHDDVDVHIGNQIINYEI 162


>gi|297581949|ref|ZP_06943869.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297533816|gb|EFH72657.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 146

 Score = 34.8 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%)

Query: 74  EVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGK 133
                   +  RI  G TVSLV+ +        +   +      G V+  S +  AL+G+
Sbjct: 46  HPRSPIERAPQRIKLGDTVSLVDAHRQLSFQVTLTTSENQHEVQGGVTCDSLLGAALLGR 105

Query: 134 ELGDIISV 141
              ++ ++
Sbjct: 106 RQHEVFTL 113


>gi|168044041|ref|XP_001774491.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674203|gb|EDQ60715.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1104

 Score = 34.8 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 5/89 (5%)

Query: 67  ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
             + +  E +         +    TV         +  Y+     E      LV  ++ +
Sbjct: 417 HLMHSVTEKVSAVVKFVMVMTINNTVVPNMSRENGRLTYKAQSQDE----EALVQAAAQL 472

Query: 127 ARALIGKELGDIISVNAPGGEKTYEILQV 155
              L  K+ G ++ VN  G    +EILQV
Sbjct: 473 GMVLFSKK-GSVVEVNFLGHTMEFEILQV 500


>gi|149177895|ref|ZP_01856493.1| probable integral membrane protein [Planctomyces maris DSM 8797]
 gi|148843235|gb|EDL57600.1| probable integral membrane protein [Planctomyces maris DSM 8797]
          Length = 971

 Score = 34.8 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 47/135 (34%), Gaps = 12/135 (8%)

Query: 2   VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           + K+ +T  G  + +Q ++    + R  +   ++   A+ +  E  +     E    +  
Sbjct: 144 MLKVQLTEAGQKRQEQTIQELLTKARQELGVELTVKPAFKEWVEIVDETQGAESVANSVA 203

Query: 62  RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVS 121
              + + +  +A V +I T +                 G +   QI     +  + G++ 
Sbjct: 204 EDDDEDQVDFKALVAEIPTHNFQLTWP-------RMQPGAELTRQIKALALSLKRPGIIP 256

Query: 122 ISSPIARALIGKELG 136
                  +  GK+ G
Sbjct: 257 -----GASTAGKQEG 266


>gi|198426988|ref|XP_002120431.1| PREDICTED: similar to Dynein heavy chain 7, axonemal (Axonemal beta
            dynein heavy chain 7) (Ciliary dynein heavy chain 7)
            (Dynein heavy chain-like protein 2) (HDHC2) [Ciona
            intestinalis]
          Length = 3957

 Score = 34.4 bits (77), Expect = 4.8,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 55/157 (35%), Gaps = 8/157 (5%)

Query: 1    MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
            M     VT   + ++    +    E+R  ++KA        D  + A  Q A+  + L +
Sbjct: 2482 MGRHNYVTPTSYLELIASFKKLLNEKRETVLKAKKRYMGGLDKLKFASAQVAEMQKELQD 2541

Query: 61   GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKK---NYQIVGDQEADVQS 117
             +   +      ++++ +       +     V   ++   +++   +  +  + E+D+  
Sbjct: 2542 LQPQLIVTAEENSKLLVVIEKETVVVEERTKVVQADEAVANEQAAESKALKDECESDLAE 2601

Query: 118  GLVSISSPIARALIGKELGDIISVNA----PGGEKTY 150
              +        AL   +  DI  V +    P G K  
Sbjct: 2602 A-IPALEAAVAALKTLKPADITIVKSMKNPPAGVKLV 2637


>gi|312109570|ref|YP_003987886.1| hypothetical protein GY4MC1_0435 [Geobacillus sp. Y4.1MC1]
 gi|311214671|gb|ADP73275.1| hypothetical protein GY4MC1_0435 [Geobacillus sp. Y4.1MC1]
          Length = 928

 Score = 34.4 bits (77), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 33/101 (32%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            D+++Q+L   + E R    +   E +   D S +         Q   E + A+      
Sbjct: 388 LDRLEQQLASLKTELRTAKPQLPQETKEGQDASGSWGDIDNAINQLEVEMQKAKEAWQKQ 447

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
            A                A ++  +    ++   Q + ++E
Sbjct: 448 LAFEQQWQEKYAQLAKQLAALANNDSGQSEETVVQQIVEKE 488


>gi|163754512|ref|ZP_02161634.1| 3-oxoacyl-(acyl carrier protein) synthase [Kordia algicida OT-1]
 gi|161325453|gb|EDP96780.1| 3-oxoacyl-(acyl carrier protein) synthase [Kordia algicida OT-1]
          Length = 149

 Score = 34.4 bits (77), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 6/140 (4%)

Query: 18  ELRWRQQEERPRIIKAISEARAYGDLSENAEYQA--AKELQNLNEGRMAELENIITRAEV 75
           E+   +Q+        I EA      S   +        LQ   E    +L  I    E+
Sbjct: 13  EIVNNRQKTVQESFARIQEAMLSETKSSAGDKHETGRAMLQLEREKLGNQLAEIQKVKEI 72

Query: 76  IDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKEL 135
           +     +           +    +    +  +      + +   ++ ++PI + L+GK++
Sbjct: 73  LHKVDAAATVSQGCLGSVIYTSQANYFISVSVGEITANNEKFYAIATNTPIGKLLLGKKV 132

Query: 136 GDIISVNAPGGEKTYEILQV 155
            DII+       +++ I ++
Sbjct: 133 DDIITFR----NQSFVIEKI 148


>gi|261366521|ref|ZP_05979404.1| putative efflux ABC transporter, permease protein [Subdoligranulum
           variabile DSM 15176]
 gi|282571794|gb|EFB77329.1| putative efflux ABC transporter, permease protein [Subdoligranulum
           variabile DSM 15176]
          Length = 775

 Score = 34.4 bits (77), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 41/112 (36%), Gaps = 2/112 (1%)

Query: 43  LSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAF--GATVSLVEKNSG 100
            S + ++    +  + +E +     + +  +   D   ++ D+  +  G    L      
Sbjct: 52  RSNHGDWHIILQNMSEDEAKQIIDSSDVAYSSWYDDINVNADQGYYINGKNAVLYGIEET 111

Query: 101 DKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
              +      + +  Q+      S  A+ L   ++GD I +N P G+  Y I
Sbjct: 112 YVTDIMKYPLEGSYPQNEKEVALSADAKELFNVQIGDNIILNTPAGDFNYTI 163


>gi|295401506|ref|ZP_06811475.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294976418|gb|EFG52027.1| conserved hypothetical protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 928

 Score = 34.4 bits (77), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/101 (14%), Positives = 33/101 (32%)

Query: 12  FDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            D+++Q+L   + E R    +   E +   D S +         Q   E + A+      
Sbjct: 388 LDRLEQQLASLKTELRTAKPQLPQETKEGQDASGSWGDIDNAINQLEVEMQKAKEAWQKQ 447

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQE 112
            A                A ++  +    ++   Q + ++E
Sbjct: 448 LAFEQQWQEKYAQLAKQLAALANNDSGQSEETVVQQIVEKE 488


>gi|94733662|emb|CAK03695.1| novel protein similar to vertebrate stromal interaction molecule 1
           (STIM1) [Danio rerio]
          Length = 483

 Score = 34.4 bits (77), Expect = 5.0,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 26/63 (41%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           M  K+ +  +    +++E    ++E R  I  A  EA+   +L E  E + ++      E
Sbjct: 254 MQQKLQIAQEEHHTVEEEKVNLEREMRSEIEAAKEEAQRLRELREGTENELSRRKYAEQE 313

Query: 61  GRM 63
              
Sbjct: 314 LDQ 316


>gi|291402753|ref|XP_002717729.1| PREDICTED: nuclear pore complex-associated protein TPR [Oryctolagus
            cuniculus]
          Length = 2814

 Score = 34.4 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 38/101 (37%)

Query: 2    VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            ++   +  +  ++++Q+L+  Q + R   +  +    A  +LSE +    A++     + 
Sbjct: 1725 METNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDV 1784

Query: 62   RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK 102
            +  +  N    ++  D  T    ++     V         +
Sbjct: 1785 KRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTE 1825


>gi|39995281|ref|NP_951232.1| hypothetical protein GSU0170 [Geobacter sulfurreducens PCA]
 gi|39982043|gb|AAR33505.1| conserved hypothetical protein [Geobacter sulfurreducens PCA]
 gi|298504284|gb|ADI83007.1| conserved hypothetical protein [Geobacter sulfurreducens KN400]
          Length = 160

 Score = 34.4 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 14/162 (8%)

Query: 7   VTSKGF-----DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
           +T +        +++ +L             A +      D   +     A  +      
Sbjct: 1   MTKQHLVATIIARLEADLA-LFTAAALHAHAAATHEECQPDNKYDTTALEASYVAQGQAN 59

Query: 62  RMAELENIITRAEVIDISTMSGDRI-AFGATVSLVEKNSGDKKNY---QIVGDQEADVQS 117
           R  E+   +     +++            A V+L ++    ++ +   Q  G + AD   
Sbjct: 60  RAQEIRQSLEAYRSLELQEFDAGAPVRLSALVTLEDEAGRTRRLFIGPQAGGMKLADPAG 119

Query: 118 G--LVSISSPIARALIGKELGDIIS-VNAPGGEKTYEILQVL 156
              +++ +SP+   L+G   GD +  V+A  G+  Y I+ V 
Sbjct: 120 EIVVITPASPLGNRLLGLAAGDEVQGVDAGKGKF-YTIVAVT 160


>gi|163751718|ref|ZP_02158936.1| transcription elongation factor [Shewanella benthica KT99]
 gi|161328370|gb|EDP99529.1| transcription elongation factor [Shewanella benthica KT99]
          Length = 194

 Score = 34.4 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +++ SSP+ + L+GK L D + +N     K YEI  V 
Sbjct: 157 VITPSSPLGQLLMGKYLDDSVRLNIGEQPKVYEITGVE 194


>gi|315924898|ref|ZP_07921115.1| S4 domain protein [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315621797|gb|EFV01761.1| S4 domain protein [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 80

 Score = 34.4 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 24/40 (60%)

Query: 116 QSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
            SG ++++   A+A    ++GDI++++   G +  EIL V
Sbjct: 24  DSGRIAVNGQTAKAGTQVKVGDILTLSFGSGVQKVEILAV 63


>gi|302695115|ref|XP_003037236.1| hypothetical protein SCHCODRAFT_103866 [Schizophyllum commune H4-8]
 gi|300110933|gb|EFJ02334.1| hypothetical protein SCHCODRAFT_103866 [Schizophyllum commune H4-8]
          Length = 164

 Score = 34.4 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 9   SKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKE 54
           ++   K+Q EL+  Q+ ER   I  I E RA  +  E  E + AK 
Sbjct: 99  AQAIKKLQAELKEEQEAERKARIDRIKERRAKAEERERIEMEKAKM 144


>gi|147802365|emb|CAN74849.1| hypothetical protein VITISV_025604 [Vitis vinifera]
          Length = 1262

 Score = 34.4 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/137 (12%), Positives = 47/137 (34%), Gaps = 10/137 (7%)

Query: 7    VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAEL 66
            ++ KG+ ++++E+    +E +   I           + E  E    K ++ + E  +   
Sbjct: 944  LSRKGYARLEEEMDELMKESQESGISYSGSNDILSQVLEVVE----KPIRKVEEETLPMT 999

Query: 67   ENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPI 126
                 +A   +++  + +    G T+ +    +       +    E++       I  P 
Sbjct: 1000 IEPHMKARKFELAIGTRENTVAGGTIVIDCDPNYLVV---LDAPYESNTPF---PIPIPG 1053

Query: 127  ARALIGKELGDIISVNA 143
                +G  +G  +    
Sbjct: 1054 QATTVGAAVGYQVLWPT 1070


>gi|83944755|ref|ZP_00957121.1| ATP synthase F1, epsilon subunit [Oceanicaulis alexandrii HTCC2633]
 gi|83851537|gb|EAP89392.1| ATP synthase F1, epsilon subunit [Oceanicaulis alexandrii HTCC2633]
          Length = 133

 Score = 34.4 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 7   VTSKGFDKIQQELRWRQQEERPRIIKAISEARA-YGDLSENAEYQAAKELQNLNEGRMAE 65
           VT+ G   + +E           + K+++EAR   G   ++ E   A+      +  ++E
Sbjct: 71  VTAAGLTILAEEAIDLADVNAEDVSKSLAEAREDLGQARDDEERHEAEARIEKFQALLSE 130

Query: 66  LEN 68
           L +
Sbjct: 131 LSH 133


>gi|281363103|ref|NP_001137638.2| CAP, isoform Q [Drosophila melanogaster]
 gi|272432428|gb|ACL83092.2| CAP, isoform Q [Drosophila melanogaster]
          Length = 2412

 Score = 34.0 bits (76), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 16/140 (11%)

Query: 4    KIPVTSKGFDKIQQELRWRQQEER--------------PRIIKAISEARAYGDLSENAEY 49
            K  ++ +  ++++ E+   QQE R              P+  ++   A     LSE+  +
Sbjct: 1596 KYILSKE--EELKFEVERLQQERRRLMEEMQRAPVLPAPQRRESYRPAAKLPTLSEDEVF 1653

Query: 50   QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
            +     + +N+    E         +  I           AT+S    +   ++ +++  
Sbjct: 1654 RQQMAEEWMNKVAEREERRQHKIIRISKIEDEHDHSAVDKATISDEFLDRVKERRHKLSM 1713

Query: 110  DQEADVQSGLVSISSPIARA 129
              ++D +SG  S   P A++
Sbjct: 1714 PADSDWESGAESQPQPAAQS 1733


>gi|221330144|ref|NP_001137637.1| CAP, isoform L [Drosophila melanogaster]
 gi|220902165|gb|ACL83091.1| CAP, isoform L [Drosophila melanogaster]
          Length = 2365

 Score = 34.0 bits (76), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 16/140 (11%)

Query: 4    KIPVTSKGFDKIQQELRWRQQEER--------------PRIIKAISEARAYGDLSENAEY 49
            K  ++ +  ++++ E+   QQE R              P+  ++   A     LSE+  +
Sbjct: 1596 KYILSKE--EELKFEVERLQQERRRLMEEMQRAPVLPAPQRRESYRPAAKLPTLSEDEVF 1653

Query: 50   QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
            +     + +N+    E         +  I           AT+S    +   ++ +++  
Sbjct: 1654 RQQMAEEWMNKVAEREERRQHKIIRISKIEDEHDHSAVDKATISDEFLDRVKERRHKLSM 1713

Query: 110  DQEADVQSGLVSISSPIARA 129
              ++D +SG  S   P A++
Sbjct: 1714 PADSDWESGAESQPQPAAQS 1733


>gi|24652386|ref|NP_610571.2| CAP, isoform A [Drosophila melanogaster]
 gi|21627574|gb|AAF58816.2| CAP, isoform A [Drosophila melanogaster]
          Length = 2376

 Score = 34.0 bits (76), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 16/140 (11%)

Query: 4    KIPVTSKGFDKIQQELRWRQQEER--------------PRIIKAISEARAYGDLSENAEY 49
            K  ++ +  ++++ E+   QQE R              P+  ++   A     LSE+  +
Sbjct: 1596 KYILSKE--EELKFEVERLQQERRRLMEEMQRAPVLPAPQRRESYRPAAKLPTLSEDEVF 1653

Query: 50   QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
            +     + +N+    E         +  I           AT+S    +   ++ +++  
Sbjct: 1654 RQQMAEEWMNKVAEREERRQHKIIRISKIEDEHDHSAVDKATISDEFLDRVKERRHKLSM 1713

Query: 110  DQEADVQSGLVSISSPIARA 129
              ++D +SG  S   P A++
Sbjct: 1714 PADSDWESGAESQPQPAAQS 1733


>gi|14669814|dbj|BAB62017.1| DCAPL1 [Drosophila melanogaster]
          Length = 2376

 Score = 34.0 bits (76), Expect = 6.4,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 16/140 (11%)

Query: 4    KIPVTSKGFDKIQQELRWRQQEER--------------PRIIKAISEARAYGDLSENAEY 49
            K  ++ +  ++++ E+   QQE R              P+  ++   A     LSE+  +
Sbjct: 1596 KYILSKE--EELKFEVERLQQERRRLMEEMQRAPVLPAPQRRESYRPAAKLPTLSEDEVF 1653

Query: 50   QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
            +     + +N+    E         +  I           AT+S    +   ++ +++  
Sbjct: 1654 RQQMAEEWMNKVAEREERRQHKIIRISKIEDEHDHSAVDKATISDEFLDRVKERRHKLSM 1713

Query: 110  DQEADVQSGLVSISSPIARA 129
              ++D +SG  S   P A++
Sbjct: 1714 PADSDWESGAESQPQPAAQS 1733


>gi|239608499|gb|EEQ85486.1| predicted protein [Ajellomyces dermatitidis ER-3]
          Length = 430

 Score = 34.0 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 4   KIPVTSKGFDKIQQELRWRQQEERP-----RIIKAISEARAYGDL 43
           K+P+T +  + + +E++  + EER      ++++   EA   G  
Sbjct: 118 KVPMTMEEDNALVKEIKHLKGEERRLKGVIKVLEEDKEAMQLGQD 162


>gi|196232795|ref|ZP_03131646.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
 gi|196223255|gb|EDY17774.1| GreA/GreB family elongation factor [Chthoniobacter flavus Ellin428]
          Length = 159

 Score = 34.0 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQVL 156
           +++  SPI + LIGK  GD I++     ++ ++IL+V 
Sbjct: 122 VITPQSPIGQLLIGKVAGDSIALPQGREQRRFKILRVQ 159


>gi|325849322|ref|ZP_08170739.1| efflux ABC transporter, permease protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325480184|gb|EGC83253.1| efflux ABC transporter, permease protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 776

 Score = 34.0 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 132 GKELGDIISVNAPGGEKTYEILQVLW 157
           G ++GD I V+   GEKT+ I  + +
Sbjct: 129 GLKIGDEIKVDDNSGEKTFTISSIAY 154


>gi|256544833|ref|ZP_05472205.1| hypothetical protein HMPREF0078_0462 [Anaerococcus vaginalis ATCC
           51170]
 gi|256399722|gb|EEU13327.1| hypothetical protein HMPREF0078_0462 [Anaerococcus vaginalis ATCC
           51170]
          Length = 776

 Score = 34.0 bits (76), Expect = 7.0,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 16/26 (61%)

Query: 132 GKELGDIISVNAPGGEKTYEILQVLW 157
           G ++GD I V+   GEKT+ I  + +
Sbjct: 129 GLKIGDEIKVDDNSGEKTFTISSIAY 154


>gi|194857954|ref|XP_001969069.1| GG24159 [Drosophila erecta]
 gi|190660936|gb|EDV58128.1| GG24159 [Drosophila erecta]
          Length = 4031

 Score = 34.0 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 4    KIPVTSKGFDKIQQELRWRQQEER--------------PRIIKAISEARAYGDLSENAEY 49
            K  ++ +  ++++ E+   QQE R              P+  ++   A     LSE+  +
Sbjct: 1596 KYILSKE--EELKFEVERLQQERRRLMEEMQRAPVLPAPQRRESYRPAAKLPTLSEDEVF 1653

Query: 50   QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
            +     + +N+    E         +  I           AT+S    +   ++ +++  
Sbjct: 1654 RQQMAEEWMNKVAEREERRQHKIIRISKIEDEHDHSAVDKATISDEFLDRVKERRHKLAM 1713

Query: 110  DQEADVQSGLVSISSPIARA 129
              ++D +SG  S   P A +
Sbjct: 1714 PADSDWESGAESQPQPAAHS 1733


>gi|220934926|ref|YP_002513825.1| hemerythrin HHE cation binding region [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219996236|gb|ACL72838.1| hemerythrin HHE cation binding region [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 177

 Score = 34.0 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 43/118 (36%), Gaps = 12/118 (10%)

Query: 3   DKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGR 62
           +  P T +  +++++E      +            +A+ D   + E +AA E ++  E  
Sbjct: 68  EVNPSTREAVNRLREEHEALYAKG-----------KAFRDAVRDVESEAAMERRSFLEVA 116

Query: 63  MAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
              L++     +  + +     R    +T    + +  +++    +    AD +   +
Sbjct: 117 QDYLQHQRRHLDFEETTIFPMARTHI-STKDWDDMDMAEERATDPLFGSNADPEYQRL 173


>gi|229817908|ref|ZP_04448190.1| hypothetical protein BIFANG_03194 [Bifidobacterium angulatum DSM
          20098]
 gi|229784512|gb|EEP20626.1| hypothetical protein BIFANG_03194 [Bifidobacterium angulatum DSM
          20098]
          Length = 44

 Score = 34.0 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 25/35 (71%)

Query: 7  VTSKGFDKIQQELRWRQQEERPRIIKAISEARAYG 41
          +T + +DK+Q+EL+WR+ E R  II  +S ARA G
Sbjct: 10 LTQEAYDKMQEELKWREGEYRDEIIAKVSAARAEG 44


>gi|312959761|ref|ZP_07774277.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
 gi|311285927|gb|EFQ64492.1| GreA/GreB family elongation factor [Pseudomonas fluorescens WH6]
          Length = 160

 Score = 34.0 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 55/164 (33%), Gaps = 17/164 (10%)

Query: 2   VDKIPVTSKGFDKIQQEL--RWRQQEERPRIIKAISEARAYG--DLSENAEYQAAKELQN 57
           ++K  V     +K+  +L    R  +                   L   A Y AA + + 
Sbjct: 1   MNKHAVHQLILEKLTADLCIAQRAAQTAYETATHEENIAENKYDTLGLEASYLAAGQAKR 60

Query: 58  LNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQS 117
           + E + A       +    D           G       ++   ++ +  +    A ++ 
Sbjct: 61  VEEIKQALALCQNLQLRAYDERRGIEIGTLMGL------EDENGRQQWLFLAPDAAGLKV 114

Query: 118 GL-------VSISSPIARALIGKELGDIISVNAPGGEKTYEILQ 154
            +       ++  SP+ ++L+GK + D + +   G  + + + +
Sbjct: 115 DVVGQPVTVITPRSPLGKSLLGKCIDDEVEILVAGARQHFTVTE 158


>gi|166030431|ref|ZP_02233260.1| hypothetical protein DORFOR_00092 [Dorea formicigenerans ATCC
           27755]
 gi|166029789|gb|EDR48546.1| hypothetical protein DORFOR_00092 [Dorea formicigenerans ATCC
           27755]
          Length = 893

 Score = 34.0 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 1/123 (0%)

Query: 29  RIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAF 88
            +   I E +      E  E +A KE +  +EG           A V D           
Sbjct: 417 DLTSEILEEKGLTYDKEGFE-KAQKEQRAKSEGTFGTHSYTGKDATVYDELDAKLATEFV 475

Query: 89  GATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALIGKELGDIISVNAPGGEK 148
           G    + +       + + + D  +D + G + +        +G + GDI ++    GE 
Sbjct: 476 GYENLVCDAKVTALTSEEEIVDALSDGEKGTIIVDKTTFYGTMGGQEGDIGTIKTADGEF 535

Query: 149 TYE 151
             E
Sbjct: 536 VVE 538


>gi|332981297|ref|YP_004462738.1| chaperone protein DnaK [Mahella australiensis 50-1 BON]
 gi|332698975|gb|AEE95916.1| chaperone protein DnaK [Mahella australiensis 50-1 BON]
          Length = 602

 Score = 33.6 bits (75), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAY 40
           M DKIP       ++Q EL   ++ +       I  A   
Sbjct: 524 MGDKIP--EADKKRLQDELDNLKKVKDADDADTIKNAIEK 561


>gi|322822668|gb|EFZ28654.1| hypothetical protein TCSYLVIO_5111 [Trypanosoma cruzi]
          Length = 390

 Score = 33.6 bits (75), Expect = 8.5,   Method: Composition-based stats.
 Identities = 10/53 (18%), Positives = 18/53 (33%)

Query: 13 DKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAE 65
           + Q E    ++ +     +   +A    +    AE +AAK  Q   E     
Sbjct: 10 KRRQAEEEAAKRHQAEEEAEKRHQAEEEAEKRHQAEEEAAKRHQAEEEAEKRH 62


>gi|119472680|ref|ZP_01614650.1| hypothetical protein ATW7_07324 [Alteromonadales bacterium TW-7]
 gi|119444805|gb|EAW26107.1| hypothetical protein ATW7_07324 [Alteromonadales bacterium TW-7]
          Length = 158

 Score = 33.6 bits (75), Expect = 8.6,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 25/37 (67%)

Query: 119 LVSISSPIARALIGKELGDIISVNAPGGEKTYEILQV 155
           +V+  +P+ + L+GK+L D +S++  G    Y+++++
Sbjct: 121 VVTPEAPLGKQLLGKQLDDEVSLSIAGKNHEYDVVEI 157


>gi|297662489|ref|XP_002809748.1| PREDICTED: LOW QUALITY PROTEIN: nucleoprotein TPR-like [Pongo abelii]
          Length = 2370

 Score = 33.6 bits (75), Expect = 9.0,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 38/101 (37%)

Query: 2    VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            ++   +  +  ++++Q+L+  Q + R   +  +    A  +LSE +    A++     + 
Sbjct: 1275 METNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDV 1334

Query: 62   RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK 102
            +  +  N    ++  D  T    ++     V         +
Sbjct: 1335 KRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTE 1375


>gi|332230524|ref|XP_003264442.1| PREDICTED: nucleoprotein TPR [Nomascus leucogenys]
          Length = 2394

 Score = 33.6 bits (75), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 38/101 (37%)

Query: 2    VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            ++   +  +  ++++Q+L+  Q + R   +  +    A  +LSE +    A++     + 
Sbjct: 1304 METNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDV 1363

Query: 62   RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK 102
            +  +  N    ++  D  T    ++     V         +
Sbjct: 1364 KRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTE 1404


>gi|120406708|ref|YP_956537.1| ATP-dependent helicase HrpA [Mycobacterium vanbaalenii PYR-1]
 gi|119959526|gb|ABM16531.1| ATP-dependent helicase HrpA [Mycobacterium vanbaalenii PYR-1]
          Length = 1310

 Score = 33.6 bits (75), Expect = 9.1,   Method: Composition-based stats.
 Identities = 14/134 (10%), Positives = 35/134 (26%), Gaps = 11/134 (8%)

Query: 13  DKIQQELRWRQ-QEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEGRMAELENIIT 71
            ++++EL   + +  R  ++    E  A+ D    A+  +A+        +         
Sbjct: 777 ARLREELAELEDRARRRDLLVGDDEVFAFYDARVPADVVSARHFDGWWRKQRH--RTPGL 834

Query: 72  RAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLVSISSPIARALI 131
                D    +             + +      Y      +       V + + +     
Sbjct: 835 LTMTRDDLLRNEAGAEQPDAWQAGDLSLPLSYRYDPGSADDGVTVHVPVDVLARLG---- 890

Query: 132 GKELGDIISVNAPG 145
               GD  +   P 
Sbjct: 891 ----GDEFAWQVPA 900


>gi|195475304|ref|XP_002089924.1| GE19352 [Drosophila yakuba]
 gi|194176025|gb|EDW89636.1| GE19352 [Drosophila yakuba]
          Length = 1873

 Score = 33.6 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 52/140 (37%), Gaps = 16/140 (11%)

Query: 4    KIPVTSKGFDKIQQELRWRQQEER--------------PRIIKAISEARAYGDLSENAEY 49
            K  ++ +  ++++ E+   QQE R              P+  ++   A     LSE+  +
Sbjct: 1586 KYILSKE--EELKFEVERLQQERRRLMEEMQRAPVLPAPQRRESYRPAAKLPTLSEDEVF 1643

Query: 50   QAAKELQNLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVG 109
            +     + +N+    E         +  I            T+S    +   ++ +++  
Sbjct: 1644 RQQMAEEWMNKVAEREERRQHKIIRISKIEDEHDHSAVDKTTISDEFLDRVKERRHKLAM 1703

Query: 110  DQEADVQSGLVSISSPIARA 129
              ++D +SG  S   P A++
Sbjct: 1704 PADSDWESGAESQPQPAAQS 1723


>gi|119611609|gb|EAW91203.1| translocated promoter region (to activated MET oncogene), isoform
            CRA_a [Homo sapiens]
          Length = 2438

 Score = 33.6 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 38/101 (37%)

Query: 2    VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            ++   +  +  ++++Q+L+  Q + R   +  +    A  +LSE +    A++     + 
Sbjct: 1348 METNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDV 1407

Query: 62   RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK 102
            +  +  N    ++  D  T    ++     V         +
Sbjct: 1408 KRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTE 1448


>gi|73961225|ref|XP_537167.2| PREDICTED: similar to Nucleoprotein TPR [Canis familiaris]
          Length = 2427

 Score = 33.6 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 13/101 (12%), Positives = 38/101 (37%)

Query: 2    VDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNEG 61
            ++   +  +  ++++Q+L+  Q + R   +  +    A  +LSE +    A++     + 
Sbjct: 1337 METNKMLREEKERLEQDLQQMQAKVRKLELDILPLQEANAELSEKSGMLQAEKKLLEEDV 1396

Query: 62   RMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDK 102
            +  +  N    ++  D  T    ++     V         +
Sbjct: 1397 KRWKARNQHLVSQQKDPDTEEYRKLLSEKEVHTKRIQQLTE 1437


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.310    0.125    0.349 

Lambda     K      H
   0.267   0.0384    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,264,694,645
Number of Sequences: 14124377
Number of extensions: 44050961
Number of successful extensions: 309917
Number of sequences better than 10.0: 3678
Number of HSP's better than 10.0 without gapping: 3317
Number of HSP's successfully gapped in prelim test: 361
Number of HSP's that attempted gapping in prelim test: 303605
Number of HSP's gapped (non-prelim): 4801
length of query: 158
length of database: 4,842,793,630
effective HSP length: 120
effective length of query: 38
effective length of database: 3,147,868,390
effective search space: 119618998820
effective search space used: 119618998820
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 75 (33.6 bits)