BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780440|ref|YP_003064853.1| transcription elongation
factor GreA [Candidatus Liberibacter asiaticus str. psy62]
         (158 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780440|ref|YP_003064853.1| transcription elongation factor GreA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 158

 Score =  316 bits (810), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
           MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE
Sbjct: 1   MVDKIPVTSKGFDKIQQELRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60

Query: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120
           GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV
Sbjct: 61  GRMAELENIITRAEVIDISTMSGDRIAFGATVSLVEKNSGDKKNYQIVGDQEADVQSGLV 120

Query: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158
           SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI
Sbjct: 121 SISSPIARALIGKELGDIISVNAPGGEKTYEILQVLWI 158


>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 25.4 bits (54), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 111 QEADVQSGLVSISSPIARALIGKELGDI-IS--VNAPGGEK 148
           Q+A     L+  ++PI R L+   LGDI IS     P G K
Sbjct: 416 QKATAPHVLLMTATPIPRTLVLTSLGDIDISKITEKPAGRK 456


>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 884

 Score = 24.6 bits (52), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 16/68 (23%)

Query: 57  NLNEGRMAELENIITRAEVIDISTMSGDRIAFGATVS-------------LVEKNSGDKK 103
           NLN  ++  L+ I+ +AE++D+ T S +R A G  V              LV+K +  K 
Sbjct: 530 NLNLDKL--LDAILLQAEMLDLKT-SINRKAEGIVVEGKLDRGRGPVVTVLVQKGTLSKG 586

Query: 104 NYQIVGDQ 111
           N  +VGDQ
Sbjct: 587 NILVVGDQ 594


>gi|254781068|ref|YP_003065481.1| hypothetical protein CLIBASIA_04850 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 43

 Score = 23.5 bits (49), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 9/29 (31%), Positives = 19/29 (65%)

Query: 123 SSPIARALIGKELGDIISVNAPGGEKTYE 151
           SSPIA A+  +++G ++  +    +K+Y+
Sbjct: 4   SSPIALAIQNRQIGGVVRFDYDFKKKSYQ 32


>gi|254780793|ref|YP_003065206.1| integral membrane protein MviN [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 518

 Score = 23.1 bits (48), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 115 VQSGLVSISSPIARALIGKELGDIISVNAPGGEKTYEI 152
           V  G++ IS+ + RA+  +E G I ++     E+ Y +
Sbjct: 242 VTGGIIQISNIVGRAIASRETGIISAIQY--AERIYSL 277


>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
            psy62]
          Length = 1576

 Score = 22.3 bits (46), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 19   LRWRQQEERPRIIKAISEARAYGDLSENAEYQAAKE 54
            L W     R  I+KAI+   +   + +N +++  K+
Sbjct: 1510 LDWMYSARREMIVKAITTGSSVATIMQNEKWKEVKD 1545


>gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine
          decarboxylase/phosphopantothenate synthase [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 405

 Score = 21.6 bits (44), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 23 QQEERPRIIKAISEARAYGDLSENAEYQAAKELQNLNE 60
          Q+   P I+ AIS  R Y  L    E   +  +Q  NE
Sbjct: 44 QKFITPLIVGAISNRRVYTHLLSYKEGYESNHIQLANE 81


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.312    0.131    0.354 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,664
Number of Sequences: 1233
Number of extensions: 3630
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 10
length of query: 158
length of database: 328,796
effective HSP length: 67
effective length of query: 91
effective length of database: 246,185
effective search space: 22402835
effective search space used: 22402835
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 35 (18.1 bits)