HHsearch alignment for GI: 254780442 and conserved domain: PRK11061
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional.
Probab=95.21 E-value=0.25 Score=29.46 Aligned_cols=132 Identities=18% Similarity=0.188 Sum_probs=89.5
Q ss_pred CCCCCHHHHHHHHHHH-HCCCCCEECCCCCCCCHHHHHHHHHHHC-------------CCCEEEEEECCHHHHHHHHHHH
Q ss_conf 5567655677899887-3488532505855773479999986200-------------3433555327856631178887
Q gi|254780442|r 168 TQALTQKDREDLHAAL-QTCEVDWVALSFIQSADDLLEIRKIISQ-------------NKIGLMSKIEKPRAIEYASEII 233 (480)
Q Consensus 168 l~~ltekD~~di~~a~-~~~~vD~ialSfVr~~~di~~~r~~l~~-------------~~~~IiaKIE~~~al~nl~eI~ 233 (480)
T Consensus 531 ~p~lf~~QlrAllRAsa~~g~l-~IM~PMVs~v~E~~~ar~~l~~~~~el~~~~~~~~~~~~vGiMiEvPsaa~~~d~la 609 (748)
T PRK11061 531 QPEIFLIQVRAMLRANAATGNL-SILLPMVTSIDEVDEARRLIERAGREVEEMIGYEIPKPRIGIMLEVPSMVFMLPHLA 609 (748)
T ss_pred CCHHHHHHHHHHHHHHCCCCCE-EEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHH
T ss_conf 9286999999999986168980-699818898899999999999999999871387778770899986699998599999
Q ss_pred HHHHEEEEECCCCC-----HHCCH-----------HHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 53312475222200-----21587-----------673689999999985139839980576788882889840347789
Q gi|254780442|r 234 QLSDAVMVARGDLG-----VEMAL-----------ELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDV 297 (480)
Q Consensus 234 ~~sDgimiaRGDLg-----~e~~~-----------e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dv 297 (480)
T Consensus 610 ~~vDF~SIGTNDLtQY~lAvDR~n~~va~lyd~~hPAvLr~i~~vi~~a~~~g~~VsvCGEmAg----dp~~~------- 678 (748)
T PRK11061 610 KRVDFISVGTNDLTQYLLAVDRNNTRVASVYDSLHPAMLRALKMIADEAEQHGLPVRLCGEMAG----DPMGA------- 678 (748)
T ss_pred HHCCEEEECHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCC----CHHHH-------
T ss_conf 7599999871088889989658986888772878889999999999999984995998133356----97579-------
Q ss_pred HHHHHCCCCEEEEC
Q ss_conf 99985199689981
Q gi|254780442|r 298 ATAVFEEADAIMLS 311 (480)
Q Consensus 298 anav~dG~D~imLs 311 (480)
T Consensus 679 ~lL~glG~~~lSm~ 692 (748)
T PRK11061 679 LLLIGLGYRHLSMN 692 (748)
T ss_pred HHHHHCCCCEEEEC
T ss_conf 99996699826567