HHsearch alignment for GI: 254780442 and conserved domain: cd04730
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=94.09 E-value=0.55 Score=26.95 Aligned_cols=110 Identities=21% Similarity=0.324 Sum_probs=74.5
Q ss_pred HHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEEC----CCCCHH-C
Q ss_conf 77899887348853250585577347999998620034335553278566311788875331247522----220021-5
Q gi|254780442|r 176 REDLHAALQTCEVDWVALSFIQSADDLLEIRKIISQNKIGLMSKIEKPRAIEYASEIIQLSDAVMVAR----GDLGVE-M 250 (480)
Q Consensus 176 ~~di~~a~~~~~vD~ialSfVr~~~di~~~r~~l~~~~~~IiaKIE~~~al~nl~eI~~~sDgimiaR----GDLg~e-~ 250 (480)
T Consensus 70 ~~~~~~~~~~-~v~~v~~~~g~p~~~v~~l~~----~g~~v~~~v~s~~~A~~a~~--~GaD~iv~qG~eAGGH~g~~~~ 142 (236)
T cd04730 70 EALLEVALEE-GVPVVSFSFGPPAEVVERLKA----AGIKVIPTVTSVEEARKAEA--AGADALVAQGAEAGGHRGTFDI 142 (236)
T ss_pred HHHHHHHHHC-CCCEEEECCCCCHHHHHHHHH----CCCEEEEECCCHHHHHHHHH--CCCCEEEEECCCCCCCCCCCCC
T ss_conf 9999999976-999999879897899999998----29989995898999999998--1899899977777778898755
Q ss_pred C-HHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf 8-767368999999998513983998057678888288984034778999985199689981
Q gi|254780442|r 251 A-LELIPGIQKKLIRIARQLGKPVVIATQMLESMVTSPFPTRAEVSDVATAVFEEADAIMLS 311 (480)
Q Consensus 251 ~-~e~vp~~Qk~ii~~~~~~~kpvivATq~leSM~~~p~PTRaEv~Dvanav~dG~D~imLs 311 (480)
T Consensus 143 ~~~~lv~~v~~~-------~~ipviaAGGI~~g------------~~i~aal~lGA~gV~~G 185 (236)
T cd04730 143 GTFALVPEVRDA-------VDIPVIAAGGIADG------------RGIAAALALGADGVQMG 185 (236)
T ss_pred CHHHHHHHHHHH-------HCCCEEEECCCCCH------------HHHHHHHHHCCCEEEEC
T ss_conf 567799999998-------29868965462778------------99999998089799955